Citrus Sinensis ID: 008629
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | 2.2.26 [Sep-21-2011] | |||||||
| P51615 | 591 | NADP-dependent malic enzy | yes | no | 1.0 | 0.945 | 0.832 | 0.0 | |
| P34105 | 591 | NADP-dependent malic enzy | yes | no | 1.0 | 0.945 | 0.822 | 0.0 | |
| P36444 | 647 | NADP-dependent malic enzy | N/A | no | 0.976 | 0.843 | 0.779 | 0.0 | |
| P12628 | 589 | NADP-dependent malic enzy | N/A | no | 0.957 | 0.908 | 0.795 | 0.0 | |
| Q9XGZ0 | 588 | NADP-dependent malic enzy | yes | no | 0.967 | 0.920 | 0.764 | 0.0 | |
| P22178 | 648 | NADP-dependent malic enzy | N/A | no | 0.964 | 0.831 | 0.756 | 0.0 | |
| P37222 | 573 | NADP-dependent malic enzy | N/A | no | 0.964 | 0.940 | 0.770 | 0.0 | |
| P43279 | 639 | NADP-dependent malic enzy | no | no | 0.948 | 0.829 | 0.772 | 0.0 | |
| Q9CA83 | 646 | NADP-dependent malic enzy | no | no | 0.978 | 0.846 | 0.756 | 0.0 | |
| O82191 | 581 | NADP-dependent malic enzy | no | no | 0.976 | 0.939 | 0.778 | 0.0 |
| >sp|P51615|MAOX_VITVI NADP-dependent malic enzyme OS=Vitis vinifera PE=2 SV=1 | Back alignment and function desciption |
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Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/591 (83%), Positives = 534/591 (90%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVASGY LLRDPR
Sbjct: 1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPR 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNE
Sbjct: 61 HNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 181 RIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+E L EFMS VKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 ANEFYIGLKQRRATGKEYSEFLQEFMSPVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
L FNDDIQGTASVVLAG+V+AL+L+GGTLA+H+FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LAFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKQTKC 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIV SRKDSLQ FKKPWAHEHEPV +LLDAVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKDSLQQFKKPWAHEHEPVKDLLDAVKVIKPTVLIGSSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VG+ FTKEVIEAMAS NEKPLILALSNPTSQSECTAEEAYTW++GRAIFASGSPFDP EY
Sbjct: 421 VGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
NGK FVPGQANNAYIFPG G+GLVISGAIRVHD+MLLAASEALA+QVT+ENF+KGLIYPP
Sbjct: 481 NGKTFVPGQANNAYIFPGLGMGLVISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591
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Vitis vinifera (taxid: 29760) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 0 |
| >sp|P34105|MAOX_POPTR NADP-dependent malic enzyme OS=Populus trichocarpa PE=2 SV=3 | Back alignment and function description |
|---|
Score = 992 bits (2564), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/591 (82%), Positives = 527/591 (89%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+KEMRDGASVLD D KSTV GGVEDVYGEDRATEDQLVTPWTISVASGY LLRDP
Sbjct: 1 MESTLKEMRDGASVLDMDPKSTVGGGVEDVYGEDRATEDQLVTPWTISVASGYTLLRDPH 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAFTEKERDAHYLRGLLPP ISQQLQEKKLMN+IRQY++PLQKY AMMELEERNE
Sbjct: 61 HNKGLAFTEKERDAHYLRGLLPPTTISQQLQEKKLMNTIRQYQLPLQKYTAMMELEERNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIF+RPQGLYISLKEKGK+L+VLKNWP++
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKVLDVLKNWPQK 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
SIQVIVVTDGERILGLGDLGCQG+GIPVGKL+LYTALGG+RPSA
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGIGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEQLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 KDEFYIGLRQRRATGQEYSELLHEFMTAVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTA+VVLAG+++ALKL+GG+LA+H FLFLGAGEAGTGIAELIALE+S+++K
Sbjct: 301 LVFNDDIQGTAAVVLAGLISALKLLGGSLADHTFLFLGAGEAGTGIAELIALEMSRRSKT 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI L DSKGLIVSSRK+SLQHFKKPWAHEHEPV LL+ VK IKP +LIG+SG
Sbjct: 361 PLEETRKKIWLTDSKGLIVSSRKESLQHFKKPWAHEHEPVKGLLEVVKAIKPIVLIGTSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VG+TFTKEVIEAMASFNEKPLILALSNPTSQSECTA+EAYTW+KG+AIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAMASFNEKPLILALSNPTSQSECTAQEAYTWTKGKAIFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
GKVFVPGQ+NNAYIFPG GLGLVISGAIRVHDDMLLAA+EALA Q+ EE KGLIYPP
Sbjct: 481 EGKVFVPGQSNNAYIFPGLGLGLVISGAIRVHDDMLLAAAEALAGQIKEEYLAKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
SNIRKIS IAANVAAKAYELG+ATRLPRP+NLVK AESCMY+P YR YR
Sbjct: 541 LSNIRKISVQIAANVAAKAYELGLATRLPRPENLVKHAESCMYSPAYRYYR 591
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Populus trichocarpa (taxid: 3694) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P36444|MAOC_FLAPR NADP-dependent malic enzyme, chloroplastic OS=Flaveria pringlei GN=MODA PE=2 SV=1 | Back alignment and function description |
|---|
Score = 950 bits (2456), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/581 (77%), Positives = 511/581 (87%), Gaps = 35/581 (6%)
Query: 14 VLDFDSK---STVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEK 70
V D +SK + V GGVEDVYGED ATED +TPW++SVASGY LLRDP HNKGLAFTEK
Sbjct: 67 VADSESKKPTAVVGGGVEDVYGEDSATEDHFITPWSVSVASGYSLLRDPHHNKGLAFTEK 126
Query: 71 ERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDN 130
ERDAHYLRGLLPP V++ LQ KK+M++IRQYEVPLQ+Y AMM+L+ERNERLFYKLLI+N
Sbjct: 127 ERDAHYLRGLLPPVVVNHDLQVKKMMHNIRQYEVPLQRYQAMMDLQERNERLFYKLLIEN 186
Query: 131 VEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG 190
+EELLP+VYTPTVGEACQKYG+IF+ PQGLYISLK+KGK+LE+LKNWP++ IQVIVVTDG
Sbjct: 187 IEELLPIVYTPTVGEACQKYGTIFKNPQGLYISLKDKGKVLEILKNWPQKKIQVIVVTDG 246
Query: 191 ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA-------------------------- 224
ERILGLGDLGCQGMGIPVGKL+LYTALGGIRPSA
Sbjct: 247 ERILGLGDLGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKMLNDEFYIGLRQ 306
Query: 225 ------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGT 278
EYAEL++EFMSAVKQNYGEKVLIQFEDFANHNAF+LL KY TTHLVFNDDIQGT
Sbjct: 307 RRASGKEYAELMNEFMSAVKQNYGEKVLIQFEDFANHNAFDLLEKYRTTHLVFNDDIQGT 366
Query: 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC 338
ASVVLAG+++ALKL+GG+LA+H+FLFLGAGEAGTGIAELIALEISKQT AP+EETRKKI
Sbjct: 367 ASVVLAGLISALKLVGGSLADHKFLFLGAGEAGTGIAELIALEISKQTNAPLEETRKKIW 426
Query: 339 LVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 398
LVDSKGLIV SR DSLQHFKKPWAH+HEPVN LDAVK IKPT+LIGSSG G+TFTKEV+
Sbjct: 427 LVDSKGLIVRSRLDSLQHFKKPWAHDHEPVNKFLDAVKAIKPTVLIGSSGAGQTFTKEVV 486
Query: 399 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQA 458
EAM+SFNEKP+ILALSNPTSQSECTAE+AYTWS+GR IFASGSPF P EYNGKV+V GQ+
Sbjct: 487 EAMSSFNEKPIILALSNPTSQSECTAEQAYTWSEGRTIFASGSPFAPVEYNGKVYVSGQS 546
Query: 459 NNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISAN 518
NNAYIFPGFGLGL+ISGAIRVHD+MLLAASEALA+QVT+E+F+ GLIYPPF+NIRKISA+
Sbjct: 547 NNAYIFPGFGLGLIISGAIRVHDEMLLAASEALAEQVTQEHFDNGLIYPPFTNIRKISAH 606
Query: 519 IAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
IAA VAAKAYELG+A+RLP+P+NLV AESCMY+P YRNYR
Sbjct: 607 IAAKVAAKAYELGLASRLPQPENLVAYAESCMYSPKYRNYR 647
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The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Flaveria pringlei (taxid: 4226) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P12628|MAOX_PHAVU NADP-dependent malic enzyme OS=Phaseolus vulgaris GN=ME1 PE=2 SV=1 | Back alignment and function description |
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Score = 920 bits (2378), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/567 (79%), Positives = 501/567 (88%), Gaps = 32/567 (5%)
Query: 25 GGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPA 84
GGV D+YGED ATED L+TPWT SVASG LLRDPR+NKGLAFTE ERDAHYLRGLLPP+
Sbjct: 23 GGVRDLYGEDSATEDHLITPWTFSVASGCSLLRDPRYNKGLAFTEGERDAHYLRGLLPPS 82
Query: 85 VISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVG 144
V +Q+LQEK+LM+++RQYEVPL +Y+A+M+L+ERNERLFYKLLIDNV ELLPVVYTPTVG
Sbjct: 83 VFNQELQEKRLMHNLRQYEVPLHRYMALMDLQERNERLFYKLLIDNVAELLPVVYTPTVG 142
Query: 145 EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGM 204
EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPE+SIQVIVVTDGERILGLGDLGCQGM
Sbjct: 143 EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKSIQVIVVTDGERILGLGDLGCQGM 202
Query: 205 GIPVGKLALYTALGGIRPSA--------------------------------EYAELLDE 232
GIPVGKL+LYTALGG+RPS+ EYA LDE
Sbjct: 203 GIPVGKLSLYTALGGVRPSSCLPVTIDVGTNNEKLLNDEFYIGLRQRRATGQEYATFLDE 262
Query: 233 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKL 292
FM AVKQNYGEKVL+QFEDFANHNAF+LL KY ++HLVFNDDIQGTASVVLAG++A+LKL
Sbjct: 263 FMRAVKQNYGEKVLVQFEDFANHNAFDLLEKYSSSHLVFNDDIQGTASVVLAGLLASLKL 322
Query: 293 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 352
+GGTLA+H FLFLGAGEAGTGIAELIA+E+SKQTKAPVEETRKKI LVDSKGLIVSSR +
Sbjct: 323 VGGTLADHTFLFLGAGEAGTGIAELIAVEVSKQTKAPVEETRKKIWLVDSKGLIVSSRLE 382
Query: 353 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 412
SLQ FKKPWAHEHEPV LL+AVK IKPT+LIGSSG G+TFTKEV+E MAS NEKPLILA
Sbjct: 383 SLQQFKKPWAHEHEPVKGLLEAVKAIKPTVLIGSSGAGKTFTKEVVETMASLNEKPLILA 442
Query: 413 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLV 472
LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP EY GK+FVPGQANNAYIFPGFGLGL+
Sbjct: 443 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKLFVPGQANNAYIFPGFGLGLI 502
Query: 473 ISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 532
+SGAIRV D+MLLAASEALA QV+EEN++KGLIYPPF+NIRKISANIAA VAAKAY+LG+
Sbjct: 503 MSGAIRVRDEMLLAASEALAAQVSEENYDKGLIYPPFTNIRKISANIAAKVAAKAYDLGL 562
Query: 533 ATRLPRPQNLVKCAESCMYTPVYRNYR 559
A+ L RP++LVK AESCMY+P YR+YR
Sbjct: 563 ASHLKRPKDLVKYAESCMYSPGYRSYR 589
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Phaseolus vulgaris (taxid: 3885) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|Q9XGZ0|MAOP3_ARATH NADP-dependent malic enzyme 3 OS=Arabidopsis thaliana GN=NADP-ME3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 919 bits (2374), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/573 (76%), Positives = 497/573 (86%), Gaps = 32/573 (5%)
Query: 19 SKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLR 78
+ S V GG+ DVYGED AT DQLVTPW SVASGY L+RDPR+NKGLAFT+KERDAHY+
Sbjct: 16 NSSGVGGGISDVYGEDSATLDQLVTPWVTSVASGYTLMRDPRYNKGLAFTDKERDAHYIT 75
Query: 79 GLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVV 138
GLLPP V+SQ +QE+K+M+++RQY VPLQ+Y+A+M+L+ERNERLFYKLLIDNVEELLPVV
Sbjct: 76 GLLPPVVLSQDVQERKVMHNLRQYTVPLQRYMALMDLQERNERLFYKLLIDNVEELLPVV 135
Query: 139 YTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGD 198
YTPTVGEACQKYGSI+RRPQGLYISLKEKGKILEVLKNWP+R IQVIVVTDGERILGLGD
Sbjct: 136 YTPTVGEACQKYGSIYRRPQGLYISLKEKGKILEVLKNWPQRGIQVIVVTDGERILGLGD 195
Query: 199 LGCQGMGIPVGKLALYTALGGIRPSA--------------------------------EY 226
LGCQGMGIPVGKL+LYTALGGIRPSA EY
Sbjct: 196 LGCQGMGIPVGKLSLYTALGGIRPSACLPITIDVGTNNEKLLNNEFYIGLKQKRANGEEY 255
Query: 227 AELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGV 286
AE L EFM AVKQNYGEKVL+QFEDFANH+AFELL+KY ++HLVFNDDIQGTASVVLAG+
Sbjct: 256 AEFLQEFMCAVKQNYGEKVLVQFEDFANHHAFELLSKYCSSHLVFNDDIQGTASVVLAGL 315
Query: 287 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI 346
+AA K++G +LA+H FLFLGAGEAGTGIAELIAL+ISK+T P++ETRKKI LVDSKGLI
Sbjct: 316 IAAQKVLGKSLADHTFLFLGAGEAGTGIAELIALKISKETGKPIDETRKKIWLVDSKGLI 375
Query: 347 VSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 406
VS RK+SLQHFK+PWAH+H+PV LL AV IKPT+LIG+SGVG+TFTKEV+EAMA+ NE
Sbjct: 376 VSERKESLQHFKQPWAHDHKPVKELLAAVNAIKPTVLIGTSGVGKTFTKEVVEAMATLNE 435
Query: 407 KPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPG 466
KPLILALSNPTSQ+ECTAEEAYTW+KGRAIFASGSPFDP +Y+GK F PGQANN YIFPG
Sbjct: 436 KPLILALSNPTSQAECTAEEAYTWTKGRAIFASGSPFDPVQYDGKKFTPGQANNCYIFPG 495
Query: 467 FGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAK 526
GLGL++SGAIRV DDMLLAASEALA QVTEENF GLIYPPF+NIRKISANIAA+V AK
Sbjct: 496 LGLGLIMSGAIRVRDDMLLAASEALASQVTEENFANGLIYPPFANIRKISANIAASVGAK 555
Query: 527 AYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
YELG+A+ LPRP++LVK AESCMY+PVYRN+R
Sbjct: 556 TYELGLASNLPRPKDLVKMAESCMYSPVYRNFR 588
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Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P22178|MAOC_FLATR NADP-dependent malic enzyme, chloroplastic OS=Flaveria trinervia GN=MOD1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 918 bits (2372), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/572 (75%), Positives = 497/572 (86%), Gaps = 33/572 (5%)
Query: 21 STVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGL 80
+ V GGVED+YGED ATED +TPW++SVASGY LLRDP HNKGLAFTEKERDAH+LRGL
Sbjct: 77 AAVGGGVEDMYGEDTATEDHYITPWSVSVASGYSLLRDPHHNKGLAFTEKERDAHFLRGL 136
Query: 81 LPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYT 140
LPP V++ LQ KK+M++IRQY+VPLQ+Y AMM+L++RNERLFYKLLI+NVEELLP+VYT
Sbjct: 137 LPPVVVNHDLQVKKMMHNIRQYQVPLQRYQAMMDLQQRNERLFYKLLIENVEELLPIVYT 196
Query: 141 PTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200
PTVGEACQKYGSIF QGL+ISLK+KG+ILE+LKNWP + IQVIVVTDGERILGLGDLG
Sbjct: 197 PTVGEACQKYGSIFENSQGLFISLKDKGRILEILKNWPHKKIQVIVVTDGERILGLGDLG 256
Query: 201 CQGMGIPVGKLALYTALGGIRPSA---------------------------------EYA 227
CQGMGIPVGKLALYTALGG+RPSA EYA
Sbjct: 257 CQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLLNDDEFYIGLKQKRAAGQEYA 316
Query: 228 ELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVV 287
EL++EFMSAVKQNYGE +LIQFEDFANHNAF+LL KY TTHLVFNDDIQGTASVVL G++
Sbjct: 317 ELMNEFMSAVKQNYGENLLIQFEDFANHNAFDLLEKYRTTHLVFNDDIQGTASVVLGGLI 376
Query: 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 347
+ALKL+GG+LA+ +FLFLGAGEAGTGIAELIALEISKQT P+EE+RKK+ LVDSKGLIV
Sbjct: 377 SALKLVGGSLADQKFLFLGAGEAGTGIAELIALEISKQTNIPLEESRKKVWLVDSKGLIV 436
Query: 348 SSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK 407
SR DSLQHFKKPWAH+HEPVN LDA+K I+PT+LIGSSG G+TFTKEV+E M+S NEK
Sbjct: 437 RSRLDSLQHFKKPWAHDHEPVNEFLDAIKTIRPTVLIGSSGTGQTFTKEVVETMSSLNEK 496
Query: 408 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGF 467
P+ILALSNPTSQSECTAE+AYTWS+GRAIFASGSPF P EYNGK++V GQANNAYIFPGF
Sbjct: 497 PIILALSNPTSQSECTAEQAYTWSEGRAIFASGSPFKPVEYNGKLYVSGQANNAYIFPGF 556
Query: 468 GLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKA 527
GLGL+ISGAIRVHDDMLLAASEA A+QVT+E+F+KGLI+PPF++IRKISA+IAA VAAKA
Sbjct: 557 GLGLIISGAIRVHDDMLLAASEAPAEQVTQEHFDKGLIFPPFTSIRKISAHIAAKVAAKA 616
Query: 528 YELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
YELG+A+RLP+P+NLV AESCMY+P YR YR
Sbjct: 617 YELGLASRLPQPENLVAYAESCMYSPKYRIYR 648
|
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Flaveria trinervia (taxid: 4227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P37222|MAOC_SOLLC NADP-dependent malic enzyme, chloroplastic (Fragment) OS=Solanum lycopersicum PE=2 SV=1 | Back alignment and function description |
|---|
Score = 916 bits (2367), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 440/571 (77%), Positives = 496/571 (86%), Gaps = 32/571 (5%)
Query: 20 KSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRG 79
+STV GGV+DVYGED ATEDQ +TPWT+SVASG+ LLR+P +NKGLAF+E+ERD HYLRG
Sbjct: 4 ESTVTGGVQDVYGEDSATEDQSITPWTLSVASGFSLLRNPHYNKGLAFSERERDTHYLRG 63
Query: 80 LLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVY 139
LLPP VIS LQ KK+MNSIR+Y+VPLQ+Y+AMM+L+E NERLFYKLLIDNVEELLP+VY
Sbjct: 64 LLPPVVISHDLQVKKMMNSIRKYDVPLQRYMAMMDLQEMNERLFYKLLIDNVEELLPIVY 123
Query: 140 TPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDL 199
TPTVGEACQKYG IF+RPQGL+ SLKEKGKI EVLKNWPE+ IQVIVVTDGERILGLGDL
Sbjct: 124 TPTVGEACQKYGWIFKRPQGLFFSLKEKGKIHEVLKNWPEKKIQVIVVTDGERILGLGDL 183
Query: 200 GCQGMGIPVGKLALYTALGGIRPSA-------------------------------EYAE 228
GCQGMGIPVGKL+LY+ALGGIRPSA EY+E
Sbjct: 184 GCQGMGIPVGKLSLYSALGGIRPSACLPVTIDVGQTMKFVDDEFYIGLRQRRATGQEYSE 243
Query: 229 LLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVA 288
LLDEFM AVKQNYGEKVLIQFEDFANHNAF LLAKYGT+HLVFNDDIQGTASVVLAG++A
Sbjct: 244 LLDEFMYAVKQNYGEKVLIQFEDFANHNAFNLLAKYGTSHLVFNDDIQGTASVVLAGLMA 303
Query: 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVS 348
AL L+GG+L+EH FLFLGAGEAGTGIAELIALE+SKQT P+EETRKKI +VDSKGLIV
Sbjct: 304 ALNLVGGSLSEHTFLFLGAGEAGTGIAELIALEMSKQTGIPLEETRKKIWMVDSKGLIVK 363
Query: 349 SRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKP 408
SR + LQHFK+PWAH+HEPV L++AVK IKPT+LIGSSG GRTFTKEV++AMA+FNEKP
Sbjct: 364 SRMEMLQHFKRPWAHDHEPVQELVNAVKSIKPTVLIGSSGAGRTFTKEVVQAMATFNEKP 423
Query: 409 LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFG 468
+I ALSNPTSQSECTAEEAY+WS+GRAIFASGSPF P EYNGKV+ GQANNAYIFPGFG
Sbjct: 424 IIFALSNPTSQSECTAEEAYSWSEGRAIFASGSPFAPVEYNGKVYASGQANNAYIFPGFG 483
Query: 469 LGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAY 528
LGL+ISGAIRVHDDMLL ASEALA +V++ENFEKG PPFSNIRKISA+I A VAAKAY
Sbjct: 484 LGLIISGAIRVHDDMLLVASEALADEVSQENFEKGTHIPPFSNIRKISAHI-AKVAAKAY 542
Query: 529 ELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
ELG+ATRLP+P++LV AESCMY+P YR+YR
Sbjct: 543 ELGLATRLPQPKDLVAYAESCMYSPAYRSYR 573
|
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Solanum lycopersicum (taxid: 4081) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|P43279|MAOC_ORYSJ NADP-dependent malic enzyme, chloroplastic OS=Oryza sativa subsp. japonica GN=ME6 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 915 bits (2364), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/567 (77%), Positives = 498/567 (87%), Gaps = 37/567 (6%)
Query: 25 GGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPA 84
GGVED+ ATE+ VTPW SVASGY LLRDP HNKGLAF+EKERDAHYLRGLLPPA
Sbjct: 78 GGVEDM-----ATEEVPVTPWAFSVASGYTLLRDPHHNKGLAFSEKERDAHYLRGLLPPA 132
Query: 85 VISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVG 144
V+SQ LQ KK+M+++RQY VPLQ+Y+AMM+L+ERNERLFYKLLIDNVEELLPVVYTPTVG
Sbjct: 133 VVSQDLQVKKIMHNLRQYSVPLQRYMAMMDLQERNERLFYKLLIDNVEELLPVVYTPTVG 192
Query: 145 EACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGM 204
EACQKYGSIFR+PQGLY+SLK+KGK+L+VL+NWPER+IQVIVVTDGERILGLGDLGCQGM
Sbjct: 193 EACQKYGSIFRQPQGLYVSLKDKGKVLDVLRNWPERNIQVIVVTDGERILGLGDLGCQGM 252
Query: 205 GIPVGKLALYTALGGIRPSA--------------------------------EYAELLDE 232
GIPVGKL+LYTALGG+RPSA EY EL++E
Sbjct: 253 GIPVGKLSLYTALGGVRPSACLPITIDVGTNNEQLLNDEFYIGLRQRRATGKEYHELMEE 312
Query: 233 FMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKL 292
FMSAVKQ YGEKVLIQFEDFANHNAF+LLAKY +HLVFNDDIQGTASVVLAG++++LK+
Sbjct: 313 FMSAVKQIYGEKVLIQFEDFANHNAFDLLAKYSKSHLVFNDDIQGTASVVLAGLLSSLKV 372
Query: 293 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 352
+GGTLAEH +LFLGAGEAGTGIAELIALEISKQTKAP+EE RKK+ L+DSKGLIV+SRK+
Sbjct: 373 VGGTLAEHTYLFLGAGEAGTGIAELIALEISKQTKAPIEECRKKVWLLDSKGLIVNSRKE 432
Query: 353 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 412
SLQ FKKPWAHEHEPV LLDAV+ IKPT+LIG+SGVG+TFTKEVIEAMASFNE+P+I +
Sbjct: 433 SLQAFKKPWAHEHEPVTTLLDAVQSIKPTVLIGTSGVGKTFTKEVIEAMASFNERPVIFS 492
Query: 413 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLV 472
LSNPTS SECTAEEAY WS+GRA+FASGSPFDP EYNGK+ VPGQ+NNAYIFPGFGLG+V
Sbjct: 493 LSNPTSHSECTAEEAYNWSQGRAVFASGSPFDPVEYNGKIHVPGQSNNAYIFPGFGLGVV 552
Query: 473 ISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGV 532
ISGA+RVH+DMLLAASE LA Q T+ENFEKG I+PPF+NIRKISA IAA+VAAKAYELG+
Sbjct: 553 ISGAVRVHEDMLLAASETLADQATQENFEKGSIFPPFTNIRKISARIAASVAAKAYELGL 612
Query: 533 ATRLPRPQNLVKCAESCMYTPVYRNYR 559
ATRLP+P++L K AESCMYTPVYR+YR
Sbjct: 613 ATRLPQPRDLEKYAESCMYTPVYRSYR 639
|
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Oryza sativa subsp. japonica (taxid: 39947) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|Q9CA83|MAOP4_ARATH NADP-dependent malic enzyme 4, chloroplastic OS=Arabidopsis thaliana GN=NADP-ME4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 914 bits (2363), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/579 (75%), Positives = 503/579 (86%), Gaps = 32/579 (5%)
Query: 13 SVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKER 72
S D KSTV GGV+DVYGED ATED +TPW++SVASGY LLRDP HNKGLAF+ +ER
Sbjct: 68 SAADIVPKSTVSGGVQDVYGEDAATEDMPITPWSLSVASGYTLLRDPHHNKGLAFSHRER 127
Query: 73 DAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVE 132
DAHYLRGLLPP VISQ LQ KK+M+++RQY+VPLQKY+AMM+L+E NERLFYKLLID+VE
Sbjct: 128 DAHYLRGLLPPTVISQDLQVKKIMHTLRQYQVPLQKYMAMMDLQETNERLFYKLLIDHVE 187
Query: 133 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGER 192
ELLPV+YTPTVGEACQKYGSIF RPQGL+ISLKEKGKI EVL+NWPE++IQVIVVTDGER
Sbjct: 188 ELLPVIYTPTVGEACQKYGSIFLRPQGLFISLKEKGKIHEVLRNWPEKNIQVIVVTDGER 247
Query: 193 ILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------------------- 224
ILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 248 ILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQRR 307
Query: 225 ----EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTAS 280
EY+EL+ EFM+AVKQNYGEKV+IQFEDFANHNAF+LLAKYGTTHLVFNDDIQGTAS
Sbjct: 308 ATGEEYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHLVFNDDIQGTAS 367
Query: 281 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 340
VVLAG++AAL+ +GG+L++HRFLFLGAGEAGTGIAELIALEISK++ P+EE RK I LV
Sbjct: 368 VVLAGLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIPLEEARKNIWLV 427
Query: 341 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 400
DSKGLIVSSRK+S+QHFKKPWAH+HEP+ L+DAVK IKPT+LIG+SGVG+TFT++V+E
Sbjct: 428 DSKGLIVSSRKESIQHFKKPWAHDHEPIRELVDAVKAIKPTVLIGTSGVGQTFTQDVVET 487
Query: 401 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANN 460
MA NEKP+IL+LSNPTSQSECTAEEAYTWS+GRAIFASGSPF P EY GK FVPGQANN
Sbjct: 488 MAKLNEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYEGKTFVPGQANN 547
Query: 461 AYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIA 520
AYIFPGFGLGL++SG IRVHDDMLLAASEALA+++ EE++EKG+IYPPF NIRKISA IA
Sbjct: 548 AYIFPGFGLGLIMSGTIRVHDDMLLAASEALAEELMEEHYEKGMIYPPFRNIRKISARIA 607
Query: 521 ANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
A VAAKAYELG+ATRLP+P+ L +CAES MY+P YR+YR
Sbjct: 608 AKVAAKAYELGLATRLPQPKELEQCAESSMYSPSYRSYR 646
|
The chloroplastic ME isoform decarboxylates malate shuttled from neighboring mesophyll cells. The CO(2) released is then refixed by ribulose-bisphosphate carboxylase. This pathway eliminates the photorespiratory loss of CO(2) that occurs in most plants. Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
| >sp|O82191|MAOP1_ARATH NADP-dependent malic enzyme 1 OS=Arabidopsis thaliana GN=NADP-ME1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 912 bits (2358), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/578 (77%), Positives = 502/578 (86%), Gaps = 32/578 (5%)
Query: 14 VLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTEKERD 73
V + D KS+V+GGV DVYGED AT + +TPW++SV+SGY LLRDPR+NKGLAFTEKERD
Sbjct: 4 VTNSDLKSSVDGGVVDVYGEDSATIEHNITPWSLSVSSGYSLLRDPRYNKGLAFTEKERD 63
Query: 74 AHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEE 133
HYLRGLLPP V+ Q+LQEK+L+N+IRQY+ PLQKY+A+ EL+ERNERLFYKLLIDNVEE
Sbjct: 64 THYLRGLLPPVVLDQKLQEKRLLNNIRQYQFPLQKYMALTELQERNERLFYKLLIDNVEE 123
Query: 134 LLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERI 193
LLP+VYTPTVGEACQK+GSIFRRPQGL+ISLK+KGKIL+VLKNWPER+IQVIVVTDGERI
Sbjct: 124 LLPIVYTPTVGEACQKFGSIFRRPQGLFISLKDKGKILDVLKNWPERNIQVIVVTDGERI 183
Query: 194 LGLGDLGCQGMGIPVGKLALYTALGGIRPSA----------------------------- 224
LGLGDLGCQGMGIPVGKLALY+ALGG+RPSA
Sbjct: 184 LGLGDLGCQGMGIPVGKLALYSALGGVRPSACLPVTIDVGTNNEKLLNDEFYIGLRQKRA 243
Query: 225 ---EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASV 281
EY+ELL+EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY THLVFNDDIQGTASV
Sbjct: 244 TGQEYSELLNEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYSDTHLVFNDDIQGTASV 303
Query: 282 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 341
VLAG+V+A KL LAEH FLFLGAGEAGTGIAELIAL +SKQ A VEE+RKKI LVD
Sbjct: 304 VLAGLVSAQKLTNSPLAEHTFLFLGAGEAGTGIAELIALYMSKQMNASVEESRKKIWLVD 363
Query: 342 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM 401
SKGLIV+SRKDSLQ FKKPWAHEHEPV +LL A+K IKPT+LIGSSGVGR+FTKEVIEAM
Sbjct: 364 SKGLIVNSRKDSLQDFKKPWAHEHEPVKDLLGAIKAIKPTVLIGSSGVGRSFTKEVIEAM 423
Query: 402 ASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNA 461
+S NE+PLI+ALSNPT+QSECTAEEAYTWSKGRAIFASGSPFDP EY GKVFV QANNA
Sbjct: 424 SSINERPLIMALSNPTTQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKVFVSTQANNA 483
Query: 462 YIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAA 521
YIFPGFGLGLVISGAIRVHDDMLLAA+EALA QV++EN+EKG+IYP FS+IRKISA IAA
Sbjct: 484 YIFPGFGLGLVISGAIRVHDDMLLAAAEALAGQVSKENYEKGMIYPSFSSIRKISAQIAA 543
Query: 522 NVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
NVA KAYELG+A RLPRP+++VKCAES MY+P YR YR
Sbjct: 544 NVATKAYELGLAGRLPRPKDIVKCAESSMYSPTYRLYR 581
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 4 EC: 0 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | ||||||
| 255546341 | 591 | malic enzyme, putative [Ricinus communis | 1.0 | 0.945 | 0.856 | 0.0 | |
| 356513167 | 633 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.883 | 0.849 | 0.0 | |
| 225445108 | 591 | PREDICTED: NADP-dependent malic enzyme [ | 1.0 | 0.945 | 0.835 | 0.0 | |
| 1708924 | 591 | RecName: Full=NADP-dependent malic enzym | 1.0 | 0.945 | 0.832 | 0.0 | |
| 356558908 | 591 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.945 | 0.834 | 0.0 | |
| 356495891 | 591 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.945 | 0.827 | 0.0 | |
| 225442481 | 640 | PREDICTED: NADP-dependent malic enzyme [ | 1.0 | 0.873 | 0.813 | 0.0 | |
| 449435772 | 591 | PREDICTED: NADP-dependent malic enzyme-l | 1.0 | 0.945 | 0.837 | 0.0 | |
| 1561774 | 640 | malate dehydrogenase [Vitis vinifera] | 1.0 | 0.873 | 0.812 | 0.0 | |
| 224142207 | 591 | predicted protein [Populus trichocarpa] | 1.0 | 0.945 | 0.827 | 0.0 |
| >gi|255546341|ref|XP_002514230.1| malic enzyme, putative [Ricinus communis] gi|223546686|gb|EEF48184.1| malic enzyme, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1041 bits (2692), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 506/591 (85%), Positives = 537/591 (90%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MESTMKEMR GASVLD D KSTV GGVEDVYGED ATEDQLVTPWT SVASGY LLRDPR
Sbjct: 1 MESTMKEMRGGASVLDMDPKSTVGGGVEDVYGEDCATEDQLVTPWTTSVASGYSLLRDPR 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAF+EKERDAHYLRGLLPP V +QQLQEKKLM++IRQY++PLQKY+AMMELEERNE
Sbjct: 61 HNKGLAFSEKERDAHYLRGLLPPVVATQQLQEKKLMHTIRQYQLPLQKYMAMMELEERNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLP+VYTPTVGEACQKYGSIF+RPQGLYISLKEKGKIL+VLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPIVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKILDVLKNWPER 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSA
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH
Sbjct: 241 NDEFYIGLRQRRATGQEYSELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTASVVLAGV+AALKL+GG+L++H FLFLGAGEAGTGIAELIALE+SK+T A
Sbjct: 301 LVFNDDIQGTASVVLAGVIAALKLLGGSLSDHTFLFLGAGEAGTGIAELIALEMSKRTNA 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIVSSRKDSLQHFK+PWAHEHEPV NLLDAVK IKPT+LIGSSG
Sbjct: 361 PLEETRKKIWLVDSKGLIVSSRKDSLQHFKQPWAHEHEPVKNLLDAVKAIKPTVLIGSSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VGRTFTKEVIEAMAS NEKPLIL+LSNPTSQSECTAEEAYTW+KG+A FASGSPFDP EY
Sbjct: 421 VGRTFTKEVIEAMASLNEKPLILSLSNPTSQSECTAEEAYTWTKGKATFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
GKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA QVTEENF KGLIYPP
Sbjct: 481 EGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALASQVTEENFSKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIRKISA+IAANVAAKAYELG+ATRLPRP+NL+K AESCMY+PVYRNYR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPRPENLMKYAESCMYSPVYRNYR 591
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356513167|ref|XP_003525285.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1034 bits (2674), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 502/591 (84%), Positives = 535/591 (90%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+K +RDG SVLD +STV GGVED+YGEDRATEDQLVTPW SVASGY LLRDP+
Sbjct: 43 MESTLKALRDGESVLDLSPRSTVSGGVEDIYGEDRATEDQLVTPWIFSVASGYSLLRDPQ 102
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
+NKGL+FTEKERDAHYLRGLLPP V +QQLQEKKLMNSIRQY+VPLQKYVAMM+L+ERNE
Sbjct: 103 YNKGLSFTEKERDAHYLRGLLPPTVSTQQLQEKKLMNSIRQYQVPLQKYVAMMDLQERNE 162
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 163 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 222
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSA
Sbjct: 223 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 282
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY +L+ EFM+AVKQNYGEKVL+QFEDFANHNAFELLAKYGTTH
Sbjct: 283 NDEFYIGLRQRRATGQEYYDLMHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTH 342
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTASVVLAGVVAALKLIGGTL EH FLFLGAGEAGTGIAELIALE+SKQTKA
Sbjct: 343 LVFNDDIQGTASVVLAGVVAALKLIGGTLPEHTFLFLGAGEAGTGIAELIALEMSKQTKA 402
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EE+RKKI LVDSKGLIVSSRK+SLQHFKKPWAHEHEPVN+LL+AVKVIKPT+LIGSSG
Sbjct: 403 PIEESRKKIWLVDSKGLIVSSRKNSLQHFKKPWAHEHEPVNSLLEAVKVIKPTVLIGSSG 462
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VGRTFTKEV+EAM S N+KPLILALSNPTSQSECTAEEAY WS+GRAIFASGSPFDP EY
Sbjct: 463 VGRTFTKEVVEAMTSNNDKPLILALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEY 522
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
GKV+ GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE+LAKQV+EEN++ GLIYPP
Sbjct: 523 KGKVYASGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASESLAKQVSEENYKNGLIYPP 582
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIR+ISANIAANVAAKAYELG+ATRLPRPQNLVKCAESCMYTPVYRNYR
Sbjct: 583 FSNIRRISANIAANVAAKAYELGLATRLPRPQNLVKCAESCMYTPVYRNYR 633
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225445108|ref|XP_002283751.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297738764|emb|CBI28009.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1021 bits (2639), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 494/591 (83%), Positives = 536/591 (90%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVASGY LLRDPR
Sbjct: 1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPR 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNE
Sbjct: 61 HNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 181 RIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+E L EFMSAVKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 ANEFYIGLKQRRATGKEYSEFLQEFMSAVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTASVVLAG+V+AL+L+GGTLA+H+FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LVFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKQTKC 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIVSSRKDSLQ FKKPWAHEHEPV +LL AVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVSSRKDSLQQFKKPWAHEHEPVKDLLHAVKVIKPTVLIGSSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VG+ FTKEVIEAMAS NEKPLILALSNPTSQSECTAEEAYTW++GRAIFASGSPFDP EY
Sbjct: 421 VGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
NGK FVPGQANNAYIFPG G+GLVISGAIRVHD+MLLAASEALA+QVT+ENF+KGLIYPP
Sbjct: 481 NGKTFVPGQANNAYIFPGLGMGLVISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1708924|sp|P51615.1|MAOX_VITVI RecName: Full=NADP-dependent malic enzyme; Short=NADP-ME gi|515759|gb|AAA67087.1| malate dehydrogenase (NADP+) [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1018 bits (2631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 492/591 (83%), Positives = 534/591 (90%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+K++RDGASVLD D K+TV GGVED+YGED ATEDQLVTPWT+SVASGY LLRDPR
Sbjct: 1 MESTLKDIRDGASVLDLDPKATVGGGVEDLYGEDFATEDQLVTPWTVSVASGYSLLRDPR 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAF +KERDAHYL GLLPP V +Q+LQE+KLMNSIRQY+VPLQKY+AMM+L+ERNE
Sbjct: 61 HNKGLAFNDKERDAHYLCGLLPPVVSTQELQERKLMNSIRQYQVPLQKYMAMMDLQERNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 181 RIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+E L EFMS VKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 ANEFYIGLKQRRATGKEYSEFLQEFMSPVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
L FNDDIQGTASVVLAG+V+AL+L+GGTLA+H+FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LAFNDDIQGTASVVLAGIVSALRLLGGTLADHKFLFLGAGEAGTGIAELIALEMSKQTKC 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIV SRKDSLQ FKKPWAHEHEPV +LLDAVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKDSLQQFKKPWAHEHEPVKDLLDAVKVIKPTVLIGSSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VG+ FTKEVIEAMAS NEKPLILALSNPTSQSECTAEEAYTW++GRAIFASGSPFDP EY
Sbjct: 421 VGKAFTKEVIEAMASCNEKPLILALSNPTSQSECTAEEAYTWTQGRAIFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
NGK FVPGQANNAYIFPG G+GLVISGAIRVHD+MLLAASEALA+QVT+ENF+KGLIYPP
Sbjct: 481 NGKTFVPGQANNAYIFPGLGMGLVISGAIRVHDEMLLAASEALARQVTQENFDKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLVK AESCMY+PVYR+YR
Sbjct: 541 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVKYAESCMYSPVYRSYR 591
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356558908|ref|XP_003547744.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1011 bits (2614), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 493/591 (83%), Positives = 527/591 (89%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+K +RDG SVLD +STV GGVEDVYGED ATEDQLVTPW SVASGY LLRDP+
Sbjct: 1 MESTLKALRDGESVLDLSPRSTVSGGVEDVYGEDHATEDQLVTPWNFSVASGYSLLRDPQ 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
+NKGLAFTEKERDAHYLRGLLPP + SQQLQEK+L+N+IRQY+VPLQKY AMMEL+E NE
Sbjct: 61 YNKGLAFTEKERDAHYLRGLLPPTITSQQLQEKQLINNIRQYQVPLQKYQAMMELQETNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLID+VEELLP+VYTP VGEACQKYGSIF+RPQGL+ISLKEKGK+LEVLKNWPER
Sbjct: 121 RLFYKLLIDHVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKVLEVLKNWPER 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSA
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH
Sbjct: 241 NDEFYIGLRQKRATGQEYSELLQEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTASVVLAGVVAALKLIGG LA+H FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LVFNDDIQGTASVVLAGVVAALKLIGGNLADHTFLFLGAGEAGTGIAELIALEMSKQTKT 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIV SRK SLQHFK+PWAHEHEPV +LL+AVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKASLQHFKQPWAHEHEPVGSLLEAVKVIKPTVLIGSSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VG+TFTKEVIEA+ S NEKPL+LALSNPTSQSECTAEEAY WS+GRAIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAVTSINEKPLVLALSNPTSQSECTAEEAYEWSEGRAIFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
GKV+ GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK VTEEN+EKGLIYPP
Sbjct: 481 KGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVTEENYEKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIRKISANIAA+VAAKAYELG+ATRLPRPQNLVK AESCMYTPVYRNYR
Sbjct: 541 FSNIRKISANIAASVAAKAYELGLATRLPRPQNLVKYAESCMYTPVYRNYR 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356495891|ref|XP_003516804.1| PREDICTED: NADP-dependent malic enzyme-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1007 bits (2603), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/591 (82%), Positives = 526/591 (89%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+K +RDG SVLD +STV GGVEDVYGED ATEDQLVTPW SVASGYCLLRDP+
Sbjct: 1 MESTLKALRDGESVLDLSPRSTVSGGVEDVYGEDHATEDQLVTPWNFSVASGYCLLRDPQ 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
+NKGLAFTEKERDAHYLRGLLPP + SQQLQ K+L+N+IRQY+VPLQKY AMMEL+E NE
Sbjct: 61 YNKGLAFTEKERDAHYLRGLLPPTITSQQLQGKQLINNIRQYQVPLQKYQAMMELQETNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLP+VYTP VGEACQKYGSIF+RPQGL+ISLKEKGKILEVLKNWPE+
Sbjct: 121 RLFYKLLIDNVEELLPIVYTPVVGEACQKYGSIFKRPQGLFISLKEKGKILEVLKNWPEK 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGG+RPSA
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+ELL EFM+AVKQNYGEKVL+QFEDFANHNAFELLAKYGTTH
Sbjct: 241 NDEFYIGLRQKRATGQEYSELLHEFMTAVKQNYGEKVLVQFEDFANHNAFELLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTASVVLAGVVAALKLIGGTLA+H FLFLGAGEAGTGIAELIALE+SKQTK
Sbjct: 301 LVFNDDIQGTASVVLAGVVAALKLIGGTLADHTFLFLGAGEAGTGIAELIALEMSKQTKT 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIV SRK SLQHFK+PWAHEHEPV +LL+AVKVIKPT+LIGSSG
Sbjct: 361 PIEETRKKIWLVDSKGLIVGSRKASLQHFKQPWAHEHEPVGSLLEAVKVIKPTVLIGSSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VG+TFTKEVIEA+ S NEKPL+LALSNPTSQSECTAEEAY WS+GRAIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAVTSINEKPLVLALSNPTSQSECTAEEAYQWSEGRAIFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
GKV+ GQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK V+ EN+EKGLIYPP
Sbjct: 481 KGKVYYSGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKLVSNENYEKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIR+ISANIAA+VA KAYELG+ATRLPRPQNLVK AESCMY+PVYRNYR
Sbjct: 541 FSNIREISANIAASVAGKAYELGLATRLPRPQNLVKYAESCMYSPVYRNYR 591
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225442481|ref|XP_002283814.1| PREDICTED: NADP-dependent malic enzyme [Vitis vinifera] gi|297743201|emb|CBI36068.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2602), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 481/591 (81%), Positives = 531/591 (89%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+KE+RDG +VL+ DSKS V GGV DV GED ATEDQ+VTPWTI+VASGY LLR+P
Sbjct: 50 MESTLKELRDGNTVLEVDSKSAVSGGVRDVQGEDAATEDQIVTPWTITVASGYSLLRNPH 109
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAFTEKERD HYLRGLLPPAV+SQ LQ KKLM +IRQY VPLQKY+AMM+L+ERNE
Sbjct: 110 HNKGLAFTEKERDHHYLRGLLPPAVVSQDLQVKKLMANIRQYTVPLQKYMAMMDLQERNE 169
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
+LFYKLL+DNVEELLPVVYTPTVGEACQKYG I RRPQGL+ISL EKGKILEVLKNWPE+
Sbjct: 170 KLFYKLLMDNVEELLPVVYTPTVGEACQKYGGILRRPQGLFISLNEKGKILEVLKNWPEK 229
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
+IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 230 NIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNQKLL 289
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EYAEL+ EFM AVKQNYGEKVL+QFEDFANHNAF+LLA+YGTTH
Sbjct: 290 DDEFYIGLRQKRATGQEYAELIHEFMCAVKQNYGEKVLVQFEDFANHNAFDLLARYGTTH 349
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTASVVLAG+++AL L+GGTLAEH FLFLGAGEAGTGIAELIALE+SKQT+A
Sbjct: 350 LVFNDDIQGTASVVLAGLISALNLVGGTLAEHTFLFLGAGEAGTGIAELIALEMSKQTQA 409
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIVSSR DSLQHFKKPWAHEHEP+ NL+DAVK IKPT+LIGSSG
Sbjct: 410 PLEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHEHEPIKNLVDAVKAIKPTVLIGSSG 469
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VGRTFTKEV+EAMASFNEKP+ILALSNPTSQSECTAEEAYTWS+GRAIFASGSPFDP EY
Sbjct: 470 VGRTFTKEVVEAMASFNEKPIILALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPVEY 529
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
NGKVFVPGQ+NNAYIFPGFGLGL+ISGAIRVHDDMLLAASEALAKQ T+ENF+KG+IYPP
Sbjct: 530 NGKVFVPGQSNNAYIFPGFGLGLIISGAIRVHDDMLLAASEALAKQATQENFDKGMIYPP 589
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLV+ AE+CMY+PVYR++R
Sbjct: 590 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVEYAENCMYSPVYRSFR 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435772|ref|XP_004135668.1| PREDICTED: NADP-dependent malic enzyme-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1006 bits (2601), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/591 (83%), Positives = 534/591 (90%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+KE+ DG SVLD D K+TV GGVED+YGED ATE+QLVTPWT SVASGY LLRDP
Sbjct: 1 MESTLKEIGDGGSVLDLDPKATVGGGVEDIYGEDCATEEQLVTPWTFSVASGYSLLRDPH 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAFTEKERDAHYLRGLLPPA+++QQLQEKKLM +IRQY++PLQK++AMMEL+ERNE
Sbjct: 61 HNKGLAFTEKERDAHYLRGLLPPAIVTQQLQEKKLMQNIRQYQLPLQKFIAMMELQERNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLL+DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWP+R
Sbjct: 121 RLFYKLLVDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPQR 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
SIQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPITIDVGTNNEKLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY ELLDEFM+AVKQNYGEKVLIQFEDFANHNAFELLAKY TTH
Sbjct: 241 NDEFYIGLKQRRATGEEYYELLDEFMTAVKQNYGEKVLIQFEDFANHNAFELLAKYRTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTA+VVLAG V+ALKLIGGTLA+H FLFLGAGEAGTGIAELIALE+SKQTKA
Sbjct: 301 LVFNDDIQGTAAVVLAGAVSALKLIGGTLADHTFLFLGAGEAGTGIAELIALEVSKQTKA 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
PVEETRKKI LVDSKGLIV SRKDSLQHFKKPWAHEHEPV +LL AVK IKPT+LIGSSG
Sbjct: 361 PVEETRKKIWLVDSKGLIVHSRKDSLQHFKKPWAHEHEPVKDLLSAVKAIKPTVLIGSSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VGRTFTKEV+EA++S NEKPLI+ALSNPTSQSECTAEEAYTWS+GRAIFASGSPFDPFEY
Sbjct: 421 VGRTFTKEVVEAVSSINEKPLIMALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPFEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
NGK FVPGQ+NNAYIFPGFGLG+VISGAIRVHDDMLLAASEALA QV+EEN++KGLIYPP
Sbjct: 481 NGKTFVPGQSNNAYIFPGFGLGVVISGAIRVHDDMLLAASEALAAQVSEENYDKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
F+NIRKISANIAANVAAKAYELG+ATRLPRP +LVK AESCMY+PVYR YR
Sbjct: 541 FTNIRKISANIAANVAAKAYELGLATRLPRPADLVKYAESCMYSPVYRTYR 591
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|1561774|gb|AAB08874.1| malate dehydrogenase [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1005 bits (2598), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/591 (81%), Positives = 530/591 (89%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+KE+RDG +VL+ DSKS V GGV DV GED ATEDQ+VTPWTI+VASGY LLR+P
Sbjct: 50 MESTLKELRDGNTVLEVDSKSAVSGGVRDVQGEDAATEDQIVTPWTITVASGYSLLRNPH 109
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAFTEKERD HYLRGLLPPAV+SQ LQ KKLM +IRQY VPLQKY+AMM+L+ERNE
Sbjct: 110 HNKGLAFTEKERDHHYLRGLLPPAVVSQDLQVKKLMANIRQYTVPLQKYMAMMDLQERNE 169
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
+LFYKLL+DNVEELLPVVYTPTVGEACQKYG I RRPQGL+ISL EKGKILEVLKNWPE+
Sbjct: 170 KLFYKLLMDNVEELLPVVYTPTVGEACQKYGGILRRPQGLFISLNEKGKILEVLKNWPEK 229
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
+IQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 230 NIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNQKLL 289
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EYAEL+ EFM AVKQNYGEKVL+QFEDFANHNAF+LLA+YGTTH
Sbjct: 290 DDEFYIGLRQKRATGQEYAELIHEFMCAVKQNYGEKVLVQFEDFANHNAFDLLARYGTTH 349
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTASVVLAG+++AL L+GGTLAEH FLFLGAGEAGTGIAELIALE+SKQT+A
Sbjct: 350 LVFNDDIQGTASVVLAGLISALNLVGGTLAEHTFLFLGAGEAGTGIAELIALEMSKQTQA 409
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI LVDSKGLIVSSR DSLQHFKKPWAHEHEP+ NL+DAVK IKPT+LIGSSG
Sbjct: 410 PLEETRKKIWLVDSKGLIVSSRMDSLQHFKKPWAHEHEPIKNLVDAVKAIKPTVLIGSSG 469
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VGRTFTKEV+EAMASFNEKP+ILALSNPTSQSECTAEEAYTWS+GRAIFASGSPFDP EY
Sbjct: 470 VGRTFTKEVVEAMASFNEKPIILALSNPTSQSECTAEEAYTWSEGRAIFASGSPFDPVEY 529
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
NGKVFVPGQ+NNAYIFPGFGLGL+ISGAIRVHDDMLLAASEALAKQ T+ENF+KG+IYPP
Sbjct: 530 NGKVFVPGQSNNAYIFPGFGLGLIISGAIRVHDDMLLAASEALAKQATQENFDKGMIYPP 589
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
FSNIRKISA+IAANVAAKAYELG+ATRLP+P+NLV+ AE+CMY+P YR++R
Sbjct: 590 FSNIRKISAHIAANVAAKAYELGLATRLPQPENLVEYAENCMYSPAYRSFR 640
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224142207|ref|XP_002324450.1| predicted protein [Populus trichocarpa] gi|222865884|gb|EEF03015.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 998 bits (2579), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 489/591 (82%), Positives = 530/591 (89%), Gaps = 32/591 (5%)
Query: 1 MESTMKEMRDGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPR 60
MEST+KEMRDGASVLD D KSTV GGVEDVYGEDRATEDQLVTPWTISVASG+ LLRDP+
Sbjct: 1 MESTLKEMRDGASVLDMDPKSTVGGGVEDVYGEDRATEDQLVTPWTISVASGFTLLRDPQ 60
Query: 61 HNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNE 120
HNKGLAFTEKERDAHYLRGLLPPA ISQQLQEKKLMN+IRQY++PLQKY AMMELEERNE
Sbjct: 61 HNKGLAFTEKERDAHYLRGLLPPATISQQLQEKKLMNTIRQYQLPLQKYTAMMELEERNE 120
Query: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPER 180
RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIF+RPQGLYISLKEKGK+L+VLKNWP++
Sbjct: 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFKRPQGLYISLKEKGKVLDVLKNWPQK 180
Query: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA---------------- 224
SIQVIVVTDGERILGLGDLGCQGMGIPVGKL+LYTALGG+RPSA
Sbjct: 181 SIQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSACLPVTIDVGTNNEQLL 240
Query: 225 ----------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH 268
EY+ELL EFM+AVKQNYGEKVLIQFEDFANHNAF+LLAKYGTTH
Sbjct: 241 KDEFYIGLRQKRATGQEYSELLHEFMTAVKQNYGEKVLIQFEDFANHNAFDLLAKYGTTH 300
Query: 269 LVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKA 328
LVFNDDIQGTA+VVLAG+++ALKL+GG+LA+H FLFLGAGEAGTGIAELIALE+S+++K
Sbjct: 301 LVFNDDIQGTAAVVLAGLISALKLLGGSLADHTFLFLGAGEAGTGIAELIALEMSRRSKT 360
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
P+EETRKKI L DSKGLIVSSRK+SLQHFKKPWAHEHEPV LL+ VK IKPT+LIG+SG
Sbjct: 361 PLEETRKKIWLTDSKGLIVSSRKESLQHFKKPWAHEHEPVKGLLEVVKAIKPTVLIGTSG 420
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY 448
VG+TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW+KG+AIFASGSPFDP EY
Sbjct: 421 VGKTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWTKGKAIFASGSPFDPVEY 480
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPP 508
GKVFVPGQ+NNAYIFPG GLGLVISGAIRVHDDMLLAA+EALA Q+ EE KGLIYPP
Sbjct: 481 EGKVFVPGQSNNAYIFPGLGLGLVISGAIRVHDDMLLAAAEALAGQIKEEYLAKGLIYPP 540
Query: 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
SNIRKIS IAANVAAKAYELG+ATRLPRP+NLVK AESCMY+P YR YR
Sbjct: 541 LSNIRKISVQIAANVAAKAYELGLATRLPRPENLVKHAESCMYSPAYRYYR 591
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 559 | ||||||
| TAIR|locus:2052045 | 581 | NADP-ME1 "NADP-malic enzyme 1" | 0.599 | 0.576 | 0.758 | 2.3e-227 | |
| TAIR|locus:2017854 | 646 | NADP-ME4 "NADP-malic enzyme 4" | 0.599 | 0.518 | 0.716 | 9e-226 | |
| TAIR|locus:2180547 | 588 | NADP-ME3 "NADP-malic enzyme 3" | 0.599 | 0.569 | 0.725 | 8.1e-225 | |
| TAIR|locus:2181980 | 588 | NADP-ME2 "NADP-malic enzyme 2" | 0.599 | 0.569 | 0.713 | 5.8e-222 | |
| UNIPROTKB|F1P0Y6 | 576 | ME1 "Malic enzyme" [Gallus gal | 0.601 | 0.583 | 0.458 | 2.6e-130 | |
| ZFIN|ZDB-GENE-040801-147 | 581 | me2 "malic enzyme 2, NAD(+)-de | 0.597 | 0.574 | 0.433 | 2.1e-126 | |
| RGD|3074 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.588 | 0.575 | 0.457 | 2.7e-126 | |
| UNIPROTKB|P13697 | 572 | Me1 "NADP-dependent malic enzy | 0.588 | 0.575 | 0.457 | 2.7e-126 | |
| MGI|MGI:97043 | 572 | Me1 "malic enzyme 1, NADP(+)-d | 0.588 | 0.575 | 0.451 | 4.4e-126 | |
| ZFIN|ZDB-GENE-041111-294 | 603 | me3 "malic enzyme 3, NADP(+)-d | 0.593 | 0.550 | 0.429 | 3.1e-125 |
| TAIR|locus:2052045 NADP-ME1 "NADP-malic enzyme 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1296 (461.3 bits), Expect = 2.3e-227, Sum P(2) = 2.3e-227
Identities = 254/335 (75%), Positives = 278/335 (82%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EY+ELL+EFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY THLVFNDDIQ
Sbjct: 247 EYSELLNEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYSDTHLVFNDDIQGTASVVLA 306
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
LAEH FLFLGAGEAGTGIAELIAL +SKQ A VEE+RKKI LVDSKG
Sbjct: 307 GLVSAQKLTNSPLAEHTFLFLGAGEAGTGIAELIALYMSKQMNASVEESRKKIWLVDSKG 366
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIV+SRKDSLQ FKKPWAHEHEPV +LL A+K IKPT+LIGSSGVGR+FTKEVIEAM+S
Sbjct: 367 LIVNSRKDSLQDFKKPWAHEHEPVKDLLGAIKAIKPTVLIGSSGVGRSFTKEVIEAMSSI 426
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIF 464
NE+PLI+ALSNPT+QSECTAEEAYTWSKGRAIFASGSPFDP EY GKVFV QANNAYIF
Sbjct: 427 NERPLIMALSNPTTQSECTAEEAYTWSKGRAIFASGSPFDPVEYEGKVFVSTQANNAYIF 486
Query: 465 PGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXX 524
PGFGLGLVISGAIRVHDDMLLAA+EALA QV++EN+EKG+IYP FS+IR
Sbjct: 487 PGFGLGLVISGAIRVHDDMLLAAAEALAGQVSKENYEKGMIYPSFSSIRKISAQIAANVA 546
Query: 525 XXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
YELG+A RLPRP+++VKCAES MY+P YR YR
Sbjct: 547 TKAYELGLAGRLPRPKDIVKCAESSMYSPTYRLYR 581
|
|
| TAIR|locus:2017854 NADP-ME4 "NADP-malic enzyme 4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1282 (456.3 bits), Expect = 9.0e-226, Sum P(2) = 9.0e-226
Identities = 240/335 (71%), Positives = 279/335 (83%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EY+EL+ EFM+AVKQNYGEKV+IQFEDFANHNAF+LLAKYGTTHLVFNDDIQ
Sbjct: 312 EYSELMHEFMTAVKQNYGEKVVIQFEDFANHNAFDLLAKYGTTHLVFNDDIQGTASVVLA 371
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
+L++HRFLFLGAGEAGTGIAELIALEISK++ P+EE RK I LVDSKG
Sbjct: 372 GLIAALRFVGGSLSDHRFLFLGAGEAGTGIAELIALEISKKSHIPLEEARKNIWLVDSKG 431
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIVSSRK+S+QHFKKPWAH+HEP+ L+DAVK IKPT+LIG+SGVG+TFT++V+E MA
Sbjct: 432 LIVSSRKESIQHFKKPWAHDHEPIRELVDAVKAIKPTVLIGTSGVGQTFTQDVVETMAKL 491
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIF 464
NEKP+IL+LSNPTSQSECTAEEAYTWS+GRAIFASGSPF P EY GK FVPGQANNAYIF
Sbjct: 492 NEKPIILSLSNPTSQSECTAEEAYTWSQGRAIFASGSPFAPVEYEGKTFVPGQANNAYIF 551
Query: 465 PGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXX 524
PGFGLGL++SG IRVHDDMLLAASEALA+++ EE++EKG+IYPPF NIR
Sbjct: 552 PGFGLGLIMSGTIRVHDDMLLAASEALAEELMEEHYEKGMIYPPFRNIRKISARIAAKVA 611
Query: 525 XXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
YELG+ATRLP+P+ L +CAES MY+P YR+YR
Sbjct: 612 AKAYELGLATRLPQPKELEQCAESSMYSPSYRSYR 646
|
|
| TAIR|locus:2180547 NADP-ME3 "NADP-malic enzyme 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1276 (454.2 bits), Expect = 8.1e-225, Sum P(2) = 8.1e-225
Identities = 243/335 (72%), Positives = 276/335 (82%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EYAE L EFM AVKQNYGEKVL+QFEDFANH+AFELL+KY ++HLVFNDDIQ
Sbjct: 254 EYAEFLQEFMCAVKQNYGEKVLVQFEDFANHHAFELLSKYCSSHLVFNDDIQGTASVVLA 313
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
+LA+H FLFLGAGEAGTGIAELIAL+ISK+T P++ETRKKI LVDSKG
Sbjct: 314 GLIAAQKVLGKSLADHTFLFLGAGEAGTGIAELIALKISKETGKPIDETRKKIWLVDSKG 373
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIVS RK+SLQHFK+PWAH+H+PV LL AV IKPT+LIG+SGVG+TFTKEV+EAMA+
Sbjct: 374 LIVSERKESLQHFKQPWAHDHKPVKELLAAVNAIKPTVLIGTSGVGKTFTKEVVEAMATL 433
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIF 464
NEKPLILALSNPTSQ+ECTAEEAYTW+KGRAIFASGSPFDP +Y+GK F PGQANN YIF
Sbjct: 434 NEKPLILALSNPTSQAECTAEEAYTWTKGRAIFASGSPFDPVQYDGKKFTPGQANNCYIF 493
Query: 465 PGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXX 524
PG GLGL++SGAIRV DDMLLAASEALA QVTEENF GLIYPPF+NIR
Sbjct: 494 PGLGLGLIMSGAIRVRDDMLLAASEALASQVTEENFANGLIYPPFANIRKISANIAASVG 553
Query: 525 XXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
YELG+A+ LPRP++LVK AESCMY+PVYRN+R
Sbjct: 554 AKTYELGLASNLPRPKDLVKMAESCMYSPVYRNFR 588
|
|
| TAIR|locus:2181980 NADP-ME2 "NADP-malic enzyme 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1245 (443.3 bits), Expect = 5.8e-222, Sum P(2) = 5.8e-222
Identities = 239/335 (71%), Positives = 273/335 (81%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EYAE L EFM AVKQNYGEKVL+QFEDFANHNAF+LL+KY +HLVFNDDIQ
Sbjct: 254 EYAEFLHEFMCAVKQNYGEKVLVQFEDFANHNAFDLLSKYSDSHLVFNDDIQGTASVVLA 313
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
LA+H FLFLGAGEAGTGIAELIAL+ISK+T AP+ ETRKKI LVDSKG
Sbjct: 314 GLIAAQKVLGKKLADHTFLFLGAGEAGTGIAELIALKISKETGAPITETRKKIWLVDSKG 373
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIVSSRK+SLQHFK+PWAHEH+PV +L+ AV IKPT+LIG+SGVG+TFTKEV+EAMA+
Sbjct: 374 LIVSSRKESLQHFKQPWAHEHKPVKDLIGAVNAIKPTVLIGTSGVGQTFTKEVVEAMATN 433
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIF 464
NEKPLILALSNPTSQ+ECTAE+AYTW+KGRAIF SGSPFDP Y+GK ++PGQANN YIF
Sbjct: 434 NEKPLILALSNPTSQAECTAEQAYTWTKGRAIFGSGSPFDPVVYDGKTYLPGQANNCYIF 493
Query: 465 PGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXXX 524
PG GLGL++SGAIRV DDMLLAASEALA QVTEE++ GLIYPPFSNIR
Sbjct: 494 PGLGLGLIMSGAIRVRDDMLLAASEALAAQVTEEHYANGLIYPPFSNIREISANIAACVA 553
Query: 525 XXXYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
Y+LG+A+ LPR ++LVK AES MY+PVYRNYR
Sbjct: 554 AKTYDLGLASNLPRAKDLVKFAESSMYSPVYRNYR 588
|
|
| UNIPROTKB|F1P0Y6 ME1 "Malic enzyme" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 756 (271.2 bits), Expect = 2.6e-130, Sum P(2) = 2.6e-130
Identities = 156/340 (45%), Positives = 207/340 (60%)
Query: 220 IRPSAEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXX 279
IR A Y +LLDEFM AV +YG LIQFEDFAN NAF LL KY + FNDDIQ
Sbjct: 224 IRGQA-YDDLLDEFMEAVTSSYGMNCLIQFEDFANVNAFRLLHKYRNKYCTFNDDIQGTA 282
Query: 280 XXXXXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 339
L++H LF GAGEA GIA LI + + K+ + +E K+I +
Sbjct: 283 SVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMKKEGMSK-DEAVKRIWM 341
Query: 340 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399
VDSKGLIV R SL K +AHEH + NL D VK IKP++LIG + +G FTK++I+
Sbjct: 342 VDSKGLIVKGRA-SLTEEKSRFAHEHAEMRNLEDIVKDIKPSVLIGVAAIGGAFTKQIIQ 400
Query: 400 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQA 458
MA+FN+ P+I ALSNPTS++ECTAE+ Y +++GR IFASGSPFDP NGK PGQ
Sbjct: 401 DMAAFNKNPIIFALSNPTSKAECTAEQCYKYTEGRGIFASGSPFDPVTLPNGKTLYPGQG 460
Query: 459 NNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXX 518
NN+Y+FPG LG++ G + +D+ L +E +A+QV+EEN ++G +YPP I+
Sbjct: 461 NNSYVFPGVALGVISCGLKHIGEDVFLTTAEVIAQQVSEENLQEGRLYPPLVTIQQVSLK 520
Query: 519 XXXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
Y AT P+P++L S MY+ Y ++
Sbjct: 521 IAVRIAEEAYRNNTATTYPQPEDLEAFIRSQMYSTDYNSF 560
|
|
| ZFIN|ZDB-GENE-040801-147 me2 "malic enzyme 2, NAD(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 2.1e-126, Sum P(2) = 2.1e-126
Identities = 147/339 (43%), Positives = 199/339 (58%)
Query: 223 SAEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXX 282
S Y +L+DEFM AV YG+ LIQFEDF NHNAF L KY + FNDDIQ
Sbjct: 228 SQRYDDLIDEFMEAVVDQYGQDTLIQFEDFGNHNAFRFLKKYREKYCTFNDDIQGTASVA 287
Query: 283 XXXXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342
L EH+ LFLGAGEA GIA LI + + + + + RKKI + D
Sbjct: 288 LAGLLAAQRAVGKPLTEHKVLFLGAGEAALGIANLIVMAMMESGMSQAD-ARKKIWMFDK 346
Query: 343 KGLIVSSRKDSLQHFKKPWAHEHEP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEA 400
GL+V R +++ + H +P V + LDAV VIKPT +IG SG GR FT +VI+A
Sbjct: 347 YGLLVKDRAYETDSYQEAFVHP-DPGDVKSFLDAVNVIKPTAIIGVSGAGRLFTHDVIKA 405
Query: 401 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQAN 459
M + NE+P+I ALSNPT+++ECTAE+AY+ ++GR +FASGSPF P +G++ PGQ N
Sbjct: 406 MGNLNERPIIFALSNPTAKAECTAEDAYSLTQGRCLFASGSPFAPVSLEDGRILTPGQGN 465
Query: 460 NAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXX 519
NAYIFPG L +++SG + D + L A++ LA Q+T+E +G +YPP SNIR
Sbjct: 466 NAYIFPGVALAVILSGVRHISDTVFLEAAKTLADQLTDEELSQGRLYPPLSNIREVSLQM 525
Query: 520 XXXXXXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
Y G+A R P P + S ++ Y ++
Sbjct: 526 AIKVVEYVYSKGMAFRYPEPVDKESYVRSVVWNTNYDSF 564
|
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| RGD|3074 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 152/332 (45%), Positives = 202/332 (60%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EY LDEFM A YG LIQFEDFAN NAF LL KY + FNDDIQ
Sbjct: 220 EYDAFLDEFMEAASSKYGMNCLIQFEDFANLNAFRLLNKYRNKYCTFNDDIQGTASVAVA 279
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
L++ LF GAGEA GIA LI + + K+ + E+ R+KI LVDSKG
Sbjct: 280 GLLAALRITKNKLSDQTVLFQGAGEAALGIAHLIVMAMEKEGLSK-EKARQKIWLVDSKG 338
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIV R SL K+ +AHEHE + NL V+ IKPT LIG + +G FT+++++ MA+F
Sbjct: 339 LIVKGRA-SLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIGVAAIGGAFTEQILKDMAAF 397
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYI 463
NE+P+I ALSNPTS++EC+AEE Y +KGRAIFASGSPFDP +G+ PGQ NN+Y+
Sbjct: 398 NERPIIFALSNPTSKAECSAEECYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYV 457
Query: 464 FPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXX 523
FPG LG+V G ++D + L +E +++QV++++ E+G +YPP + IR
Sbjct: 458 FPGVALGVVACGLRHINDSVFLTTAEVISQQVSDKHLEEGRLYPPLNTIRDVSLKIAVKI 517
Query: 524 XXXXYELGVATRLPRPQNLVKCAESCMYTPVY 555
Y+ +AT P PQN + S MY+ Y
Sbjct: 518 VQDAYKEKMATVYPEPQNKEEFVSSQMYSTNY 549
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| UNIPROTKB|P13697 Me1 "NADP-dependent malic enzyme" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 2.7e-126, Sum P(2) = 2.7e-126
Identities = 152/332 (45%), Positives = 202/332 (60%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EY LDEFM A YG LIQFEDFAN NAF LL KY + FNDDIQ
Sbjct: 220 EYDAFLDEFMEAASSKYGMNCLIQFEDFANLNAFRLLNKYRNKYCTFNDDIQGTASVAVA 279
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
L++ LF GAGEA GIA LI + + K+ + E+ R+KI LVDSKG
Sbjct: 280 GLLAALRITKNKLSDQTVLFQGAGEAALGIAHLIVMAMEKEGLSK-EKARQKIWLVDSKG 338
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIV R SL K+ +AHEHE + NL V+ IKPT LIG + +G FT+++++ MA+F
Sbjct: 339 LIVKGRA-SLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIGVAAIGGAFTEQILKDMAAF 397
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYI 463
NE+P+I ALSNPTS++EC+AEE Y +KGRAIFASGSPFDP +G+ PGQ NN+Y+
Sbjct: 398 NERPIIFALSNPTSKAECSAEECYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYV 457
Query: 464 FPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXX 523
FPG LG+V G ++D + L +E +++QV++++ E+G +YPP + IR
Sbjct: 458 FPGVALGVVACGLRHINDSVFLTTAEVISQQVSDKHLEEGRLYPPLNTIRDVSLKIAVKI 517
Query: 524 XXXXYELGVATRLPRPQNLVKCAESCMYTPVY 555
Y+ +AT P PQN + S MY+ Y
Sbjct: 518 VQDAYKEKMATVYPEPQNKEEFVSSQMYSTNY 549
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| MGI|MGI:97043 Me1 "malic enzyme 1, NADP(+)-dependent, cytosolic" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 4.4e-126, Sum P(2) = 4.4e-126
Identities = 150/332 (45%), Positives = 200/332 (60%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EY LDEFM A YG LIQFEDFAN NAF LL KY + FNDDIQ
Sbjct: 220 EYDAFLDEFMEAASSKYGMNCLIQFEDFANRNAFRLLNKYRNKYCTFNDDIQGTASVAVA 279
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
L++ LF GAGEA GIA L+ + + K+ + E RKKI LVDSKG
Sbjct: 280 GLLAALRITKNKLSDQTVLFQGAGEAALGIAHLVVMAMEKEGLSK-ENARKKIWLVDSKG 338
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIV R SL K+ +AHEHE + NL V+ IKPT LIG + +G FT+++++ MA+F
Sbjct: 339 LIVKGRA-SLTEEKEVFAHEHEEMKNLEAIVQKIKPTALIGVAAIGGAFTEQILKDMAAF 397
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYI 463
NE+P+I ALSNPTS++EC+AE+ Y +KGRAIFASGSPFDP +G+ PGQ NN+Y+
Sbjct: 398 NERPIIFALSNPTSKAECSAEQCYKVTKGRAIFASGSPFDPVTLPDGRTLFPGQGNNSYV 457
Query: 464 FPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXX 523
FPG LG+V G + D + L +E +++QV++++ ++G +YPP + IR
Sbjct: 458 FPGVALGVVACGLRHIDDKVFLTTAEVISQQVSDKHLQEGRLYPPLNTIRGVSLKIAVKI 517
Query: 524 XXXXYELGVATRLPRPQNLVKCAESCMYTPVY 555
Y+ +AT P PQN + S MY+ Y
Sbjct: 518 VQDAYKEKMATVYPEPQNKEEFVSSQMYSTNY 549
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| ZFIN|ZDB-GENE-041111-294 me3 "malic enzyme 3, NADP(+)-dependent, mitochondrial" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 721 (258.9 bits), Expect = 3.1e-125, Sum P(2) = 3.1e-125
Identities = 144/335 (42%), Positives = 203/335 (60%)
Query: 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQXXXXXXXX 284
EY +L+DEFM AV YG LIQFEDFAN NAF +L KY + FNDDIQ
Sbjct: 254 EYDDLIDEFMQAVTDKYGMNCLIQFEDFANSNAFRILNKYRNRYCTFNDDIQGTASVAVA 313
Query: 285 XXXXXXXXXXXTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344
L++H+F+F GAGEA GIA L+ + ++K+ P E ++I +VDSKG
Sbjct: 314 GILAALKITKNKLSDHKFVFQGAGEAALGIAHLLIMAMAKEG-IPHAEAAQRIWMVDSKG 372
Query: 345 LIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASF 404
LIV R L H K+ +AH+H + L + V+ IKPT +IG + +G FT+++I+ MA+
Sbjct: 373 LIVKGRSH-LNHEKEEFAHDHPHIKTLEEVVETIKPTAIIGVAAIGGAFTEKIIKNMAAN 431
Query: 405 NEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYI 463
NE+P+I ALSNPTS++ECTAE+ YT ++GR IFASGSPF +G+ F PGQ NNAY+
Sbjct: 432 NERPIIFALSNPTSKAECTAEQCYTLTEGRGIFASGSPFKKVTLADGRSFYPGQGNNAYV 491
Query: 464 FPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRXXXXXXXXXX 523
FPG LG++ G + DD+ L +EA+++ VTEE+ +G +YPP IR
Sbjct: 492 FPGVALGVIACGVRHISDDIFLTTAEAISEMVTEEHLAEGRLYPPLKTIREVSFKIAVKI 551
Query: 524 XXXXYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
Y+ G+A+ P P++ S +Y Y ++
Sbjct: 552 VDHAYKQGIASWYPEPKDKEAFILSHVYNSDYDSF 586
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O82191 | MAOP1_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.7785 | 0.9767 | 0.9397 | no | no |
| Q8ZPE8 | MAO1_SALTY | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| P06801 | MAOX_MOUSE | 1, ., 1, ., 1, ., 4, 0 | 0.4860 | 0.8980 | 0.8776 | yes | no |
| B5QTN6 | MAO1_SALEP | 1, ., 1, ., 1, ., 3, 8 | 0.3971 | 0.8962 | 0.8867 | yes | no |
| P13697 | MAOX_RAT | 1, ., 1, ., 1, ., 4, 0 | 0.4860 | 0.8980 | 0.8776 | yes | no |
| Q29558 | MAOX_PIG | 1, ., 1, ., 1, ., 4, 0 | 0.4804 | 0.8980 | 0.9012 | yes | no |
| B5RAB4 | MAO1_SALG2 | 1, ., 1, ., 1, ., 3, 8 | 0.3971 | 0.8962 | 0.8867 | yes | no |
| P34105 | MAOX_POPTR | 1, ., 1, ., 1, ., 4, 0 | 0.8223 | 1.0 | 0.9458 | yes | no |
| Q9XGZ0 | MAOP3_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.7643 | 0.9677 | 0.9200 | yes | no |
| Q6FFL8 | MAO1_ACIAD | 1, ., 1, ., 1, ., 3, 8 | 0.3963 | 0.9033 | 0.8922 | yes | no |
| A9MYU8 | MAO1_SALPB | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| Q9LYG3 | MAOP2_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.7560 | 0.9695 | 0.9217 | no | no |
| P22178 | MAOC_FLATR | 1, ., 1, ., 1, ., 4, 0 | 0.7569 | 0.9642 | 0.8317 | N/A | no |
| P43279 | MAOC_ORYSJ | 1, ., 1, ., 1, ., 4, 0 | 0.7724 | 0.9481 | 0.8294 | no | no |
| A7MN74 | MAO1_CROS8 | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8980 | 0.8869 | yes | no |
| B4TW15 | MAO1_SALSV | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| B5F5W5 | MAO1_SALA4 | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| B5FEY5 | MAO1_VIBFM | 1, ., 1, ., 1, ., 3, 8 | 0.4 | 0.9033 | 0.8985 | yes | no |
| B7LQX1 | MAO1_ESCF3 | 1, ., 1, ., 1, ., 3, 8 | 0.3927 | 0.9033 | 0.8938 | yes | no |
| Q83ML6 | MAO1_SHIFL | 1, ., 1, ., 1, ., 3, 8 | 0.3927 | 0.9033 | 0.8938 | yes | no |
| P37222 | MAOC_SOLLC | 1, ., 1, ., 1, ., 4, 0 | 0.7705 | 0.9642 | 0.9406 | N/A | no |
| P37223 | MAOX_MESCR | 1, ., 1, ., 1, ., 4, 0 | 0.7368 | 0.9821 | 0.9384 | N/A | no |
| P51615 | MAOX_VITVI | 1, ., 1, ., 1, ., 4, 0 | 0.8324 | 1.0 | 0.9458 | yes | no |
| A8AGN6 | MAO1_CITK8 | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| Q6TU48 | MAOX_DICDI | 1, ., 1, ., 1, ., 4, 0 | 0.4579 | 0.8908 | 0.9154 | yes | no |
| Q9CA83 | MAOP4_ARATH | 1, ., 1, ., 1, ., 4, 0 | 0.7564 | 0.9785 | 0.8467 | no | no |
| B4T5V6 | MAO1_SALNS | 1, ., 1, ., 1, ., 3, 8 | 0.3971 | 0.8962 | 0.8867 | yes | no |
| Q0T457 | MAO1_SHIF8 | 1, ., 1, ., 1, ., 3, 8 | 0.3927 | 0.9033 | 0.8938 | yes | no |
| P48163 | MAOX_HUMAN | 1, ., 1, ., 1, ., 4, 0 | 0.4841 | 0.8980 | 0.8776 | yes | no |
| B1LFD8 | MAO1_ECOSM | 1, ., 1, ., 1, ., 3, 8 | 0.3927 | 0.9033 | 0.8938 | yes | no |
| P12628 | MAOX_PHAVU | 1, ., 1, ., 1, ., 4, 0 | 0.7954 | 0.9570 | 0.9083 | N/A | no |
| P16243 | MAOC_MAIZE | 1, ., 1, ., 1, ., 4, 0 | 0.7563 | 0.9266 | 0.8144 | N/A | no |
| B4TII8 | MAO1_SALHS | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| B5FHJ6 | MAO1_SALDC | 1, ., 1, ., 1, ., 3, 8 | 0.3971 | 0.8962 | 0.8867 | yes | no |
| Q57P88 | MAO1_SALCH | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| Q5PHY7 | MAO1_SALPA | 1, ., 1, ., 1, ., 3, 8 | 0.3989 | 0.8962 | 0.8867 | yes | no |
| Q4FRX3 | MAO1_PSYA2 | 1, ., 1, ., 1, ., 3, 8 | 0.4109 | 0.9016 | 0.9 | yes | no |
| Q5E4J3 | MAO1_VIBF1 | 1, ., 1, ., 1, ., 3, 8 | 0.4 | 0.9033 | 0.8985 | yes | no |
| P36444 | MAOC_FLAPR | 1, ., 1, ., 1, ., 4, 0 | 0.7796 | 0.9767 | 0.8438 | N/A | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 1.1.1 | 0.998 |
| 4th Layer | 1.1.1.40 | 0.994 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | VVME2 | RecName- Full=Malic enzyme; (591 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00019865001 | SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (961 aa) | • | • | 0.942 | ||||||
 | GSVIVG00009618001 | RecName- Full=L-lactate dehydrogenase; EC=1.1.1.27; (350 aa) | • | • | • | 0.919 | |||||
 | GSVIVG00017898001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (565 aa) | • | • | • | 0.917 | |||||
 | GSVIVG00026376001 | hypothetical protein LOC100248878 (320 aa) | • | • | 0.916 | ||||||
 | GSVIVG00028595001 | RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa) | • | • | 0.913 | ||||||
 | GSVIVG00028594001 | RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa) | • | • | 0.913 | ||||||
 | GSVIVG00019169001 | RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa) | • | • | 0.913 | ||||||
 | GSVIVG00026767001 | RecName- Full=Malic enzyme; (605 aa) | • | • | • | 0.912 | |||||
 | GSVIVG00018984001 | RecName- Full=Malic enzyme; (625 aa) | • | • | • | 0.912 | |||||
 | 26N20_30 | RecName- Full=Pyruvate kinase; EC=2.7.1.40; (493 aa) | • | • | 0.910 | ||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 559 | |||
| PLN03129 | 581 | PLN03129, PLN03129, NADP-dependent malic enzyme; P | 0.0 | |
| PRK13529 | 563 | PRK13529, PRK13529, malate dehydrogenase; Provisio | 0.0 | |
| PTZ00317 | 559 | PTZ00317, PTZ00317, NADP-dependent malic enzyme; P | 0.0 | |
| cd05312 | 279 | cd05312, NAD_bind_1_malic_enz, NAD(P) binding doma | 1e-148 | |
| pfam03949 | 255 | pfam03949, Malic_M, Malic enzyme, NAD binding doma | 1e-123 | |
| COG0281 | 432 | COG0281, SfcA, Malic enzyme [Energy production and | 1e-114 | |
| smart00919 | 231 | smart00919, Malic_M, Malic enzyme, NAD binding dom | 7e-93 | |
| cd00762 | 254 | cd00762, NAD_bind_malic_enz, NAD(P) binding domain | 7e-89 | |
| pfam00390 | 182 | pfam00390, malic, Malic enzyme, N-terminal domain | 2e-78 | |
| cd05311 | 226 | cd05311, NAD_bind_2_malic_enz, NAD(P) binding doma | 7e-31 | |
| PRK12862 | 763 | PRK12862, PRK12862, malic enzyme; Reviewed | 6e-20 | |
| PRK12861 | 764 | PRK12861, PRK12861, malic enzyme; Reviewed | 3e-18 | |
| PRK07232 | 752 | PRK07232, PRK07232, bifunctional malic enzyme oxid | 6e-18 | |
| cd05191 | 86 | cd05191, NAD_bind_amino_acid_DH, NAD(P) binding do | 3e-08 |
| >gnl|CDD|215594 PLN03129, PLN03129, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Score = 1049 bits (2715), Expect = 0.0
Identities = 408/582 (70%), Positives = 467/582 (80%), Gaps = 33/582 (5%)
Query: 10 DGASVLDFDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVASGYCLLRDPRHNKGLAFTE 69
+S+ D + + GGVEDVYGED ATE+Q VTPW VASGY LLRDPR+NKGLAFTE
Sbjct: 1 ASSSLADARRRRSAAGGVEDVYGEDAATEEQPVTPWV-RVASGYDLLRDPRYNKGLAFTE 59
Query: 70 KERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 129
ERD LRGLLPPAV+SQ+LQ K+ M ++R E PL KY A+M+L+ERNERLFY++LID
Sbjct: 60 TERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLID 119
Query: 130 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTD 189
N+EELLP+VYTPTVGEACQKYGS+FRRP+GLYISLK+KG++L +LKNWPER +QVIVVTD
Sbjct: 120 NIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTD 179
Query: 190 GERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA------------------------- 224
GERILGLGDLG QGMGIPVGKL LYTA GGIRPSA
Sbjct: 180 GERILGLGDLGVQGMGIPVGKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLR 239
Query: 225 -------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQG 277
EY EL+DEFM AVKQ +G KVL+QFEDFAN NAF LL +Y TTHL FNDDIQG
Sbjct: 240 QPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNAFRLLQRYRTTHLCFNDDIQG 299
Query: 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 337
TA+V LAG++AAL+ GG LA+ R LF GAGEAGTGIAELIAL +S+QT EE RK+I
Sbjct: 300 TAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRI 359
Query: 338 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEV 397
LVDSKGL+ SRKDSLQ FKKP+AH+HEP +LL+AVK IKPT+LIG SGVG TFTKEV
Sbjct: 360 WLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEV 419
Query: 398 IEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQ 457
+EAMAS NE+P+I ALSNPTS++ECTAEEAYTW+ GRAIFASGSPFDP EYNGK F PGQ
Sbjct: 420 LEAMASLNERPIIFALSNPTSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQ 479
Query: 458 ANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISA 517
ANNAYIFPG GLG ++SGAIRV DDMLLAA+EALA QVTEE KG IYPPFS IR ISA
Sbjct: 480 ANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVTEEELAKGAIYPPFSRIRDISA 539
Query: 518 NIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559
++AA VAAKAYE G+ATRLPRP++LV+ AESCMY+PVYR YR
Sbjct: 540 HVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581
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Length = 581 |
| >gnl|CDD|237414 PRK13529, PRK13529, malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 688 bits (1779), Expect = 0.0
Identities = 247/551 (44%), Positives = 344/551 (62%), Gaps = 45/551 (8%)
Query: 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKY 109
G LL +P NKG AFTE+ER+ L GLLPPAV + + Q ++ + L+K+
Sbjct: 15 LRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKH 74
Query: 110 VAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGK 169
+ + L++RNE LFY+LL D++EE++P++YTPTVGEAC+++ I+RRP+GL+IS ++ +
Sbjct: 75 IYLRNLQDRNETLFYRLLSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDR 134
Query: 170 ILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS------ 223
I ++L+N P R I++IVVTDGERILG+GD G GMGIP+GKL+LYTA GGI P+
Sbjct: 135 IEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGIPIGKLSLYTACGGIDPARTLPVV 194
Query: 224 --------------------------AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 257
EY E +DEF+ AVK+ + L+QFEDFA NA
Sbjct: 195 LDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQKNA 253
Query: 258 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAEL 317
+L +Y FNDDIQGT +V LAG++AALK+ G L++ R +FLGAG AG GIA+
Sbjct: 254 RRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQ 313
Query: 318 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNN------- 370
I + + EE RK+ +VD +GL+ D L F+KP+A + E + +
Sbjct: 314 IVAAM-VREGLSEEEARKRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDV 371
Query: 371 --LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 428
LL+ V+ +KPT+LIG SG FT+E+++ MA+ E+P+I LSNPTS++E T E+
Sbjct: 372 ISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHCERPIIFPLSNPTSRAEATPEDLI 431
Query: 429 TWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 488
W+ GRA+ A+GSPF P EYNGK + GQ NNAYIFPG GLG++ SGA RV D ML+AA+
Sbjct: 432 AWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLMAAA 491
Query: 489 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 548
ALA V +G + PP +IR++S IA VA A E G+A ++L + E
Sbjct: 492 HALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIED 550
Query: 549 CMYTPVYRNYR 559
M+ P YR YR
Sbjct: 551 NMWQPEYRPYR 561
|
Length = 563 |
| >gnl|CDD|240357 PTZ00317, PTZ00317, NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Score = 614 bits (1586), Expect = 0.0
Identities = 251/548 (45%), Positives = 337/548 (61%), Gaps = 42/548 (7%)
Query: 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVP 105
S A G +LR+ NKG AFT +ER+ + GLLPP V + + Q ++L + E P
Sbjct: 13 VPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETP 72
Query: 106 LQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLK 165
+ KY + + + NE LFY LL+ ++ELLP++YTPTVGEACQ Y ++F+R +GLY+S
Sbjct: 73 INKYQFLRNIHDTNETLFYALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRA 132
Query: 166 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS-- 223
KGKI E+LKNWP ++ VIV+TDG RILGLGDLG GMGI +GKL+LY A GGI PS
Sbjct: 133 HKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGMGISIGKLSLYVAGGGINPSRV 192
Query: 224 ------------------------------AEYAELLDEFMSAVKQNYGEKVLIQFEDFA 253
EY ELLDEFM AV + ++QFEDF+
Sbjct: 193 LPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDFS 251
Query: 254 NHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTG 313
N++ F+LL +Y + FNDDIQGT +V+ AG + ALKL G E R +F GAG A G
Sbjct: 252 NNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIG 311
Query: 314 IAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPV 368
+A IA +++ + EE K LVDSKGL+ ++R D L K P+A E +
Sbjct: 312 VANNIA-DLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSL 370
Query: 369 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 428
L D V+ +KPT L+G SGVG FT+EV++ MAS E+P+I LSNPTS++ECTAE+AY
Sbjct: 371 KTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVERPIIFPLSNPTSKAECTAEDAY 430
Query: 429 TWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS 488
W+ GRAI ASGSPF P NGK P Q NN Y+FPG GLG I+ + D+ML+AA+
Sbjct: 431 KWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAAA 490
Query: 489 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQN---LVKC 545
+LA V+EE+ +G +YPP +IR+ISA+IA +V +A E+G+A P N L+
Sbjct: 491 ASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLAL 550
Query: 546 AESCMYTP 553
+ M+ P
Sbjct: 551 VKDRMWVP 558
|
Length = 559 |
| >gnl|CDD|133454 cd05312, NAD_bind_1_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Score = 425 bits (1096), Expect = e-148
Identities = 165/281 (58%), Positives = 208/281 (74%), Gaps = 4/281 (1%)
Query: 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334
IQGTA+V LAG++AAL++ G L++ R LFLGAG AG GIA+LI + ++ EE R
Sbjct: 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVRE-GLSEEEAR 59
Query: 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRT 392
KKI LVDSKGL+ RKD L FKKP+A + E +LL+ VK +KPT+LIG SGVG
Sbjct: 60 KKIWLVDSKGLLTKDRKD-LTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGA 118
Query: 393 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 452
FT+EV+ AMA NE+P+I ALSNPTS++ECTAE+AY W+ GRA+FASGSPF P EYNGK
Sbjct: 119 FTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTDGRALFASGSPFPPVEYNGKT 178
Query: 453 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 512
+VPGQ NNAYIFPG GLG ++SGA + D+M LAA+EALA VT+E +G +YPP SNI
Sbjct: 179 YVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238
Query: 513 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 553
R+ISA IA VA AYE G+ATR P P++L + +S M+ P
Sbjct: 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 279 |
| >gnl|CDD|217809 pfam03949, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
Score = 362 bits (931), Expect = e-123
Identities = 129/257 (50%), Positives = 169/257 (65%), Gaps = 5/257 (1%)
Query: 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334
IQGTA+VVLAG++ ALK+ G L++ + +F GAG AG GIAEL+ + ++ EE R
Sbjct: 1 IQGTAAVVLAGLLNALKITGKPLSDQKIVFFGAGAAGIGIAELLVAAMVRE-GLSEEEAR 59
Query: 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN---NLLDAVKVIKPTILIGSSGVGR 391
K I +VD KGL+ R+D L FKKP+A + V L +AVK KP +LIG SGV
Sbjct: 60 KNIWMVDRKGLLTEGRED-LNPFKKPFARKTNEVKGWGTLAEAVKGAKPDVLIGVSGVPG 118
Query: 392 TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGK 451
FT+E++ AMA E+P+I ALSNPT ++E T EEAY W+ GRA+FA+GSPF P E NG+
Sbjct: 119 VFTEEIVRAMAEHTERPIIFALSNPTPKAEITPEEAYKWTAGRALFATGSPFPPVELNGR 178
Query: 452 VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511
P Q NN IFPG GLG + A R+ D+M LAA+EALA+ VTEE +G I PP +
Sbjct: 179 SDYPNQVNNVLIFPGIGLGALDVRARRITDEMFLAAAEALAELVTEEELGEGYIIPPLFD 238
Query: 512 IRKISANIAANVAAKAY 528
IR++S +A VA A
Sbjct: 239 IREVSPRVAVAVAKAAV 255
|
Length = 255 |
| >gnl|CDD|223358 COG0281, SfcA, Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 346 bits (891), Expect = e-114
Identities = 155/481 (32%), Positives = 223/481 (46%), Gaps = 66/481 (13%)
Query: 96 MNSIRQYEVPLQKYVAMMELEE----------RNERLFYKLLIDNVEELLPVVYTPTVGE 145
+ +I Q E + Y +L+ + L Y + + +E LP+ YTP V E
Sbjct: 1 VETIEQAE---RAYEQYEQLKTEALDKHEYLDPGKILIYPTVPLHTQEDLPLAYTPGVAE 57
Query: 146 ACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGM 204
AC+ R+ S +G + V VVTDG +LGLG++G G
Sbjct: 58 ACKAISEDPRKAY----SYTARGNL-------------VAVVTDGTAVLGLGNIGPLAGK 100
Query: 205 GIPVGKLALYTALGGIR--P---SAEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 259
+ GK L+ A GI P + EF+ A++ +G + ++ D A E
Sbjct: 101 PVMEGKAVLFKAFAGIDVLPIELDVGTNNEIIEFVKALEPTFG-GINLEDIDAPRCFAIE 159
Query: 260 LLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIA 319
+Y VF+DD QGTA V LA ++ ALKL G L + + + GAG AG IA+L+
Sbjct: 160 ERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLL- 218
Query: 320 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379
A V + I +VD KGL+ R+D L +K +A E + +
Sbjct: 219 ------VAAGV--KEENIFVVDRKGLLYDGRED-LTMNQKKYAKAIEDTGERTLDLALAG 269
Query: 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 439
+LIG SGVG FT+E+++ MA + P+I AL+NPT E T E+A W G AI A+
Sbjct: 270 ADVLIGVSGVG-AFTEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVAT 323
Query: 440 GSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEEN 499
G P Q NN IFPG G + A + D+M +AA+EA+A EE
Sbjct: 324 GRSDY----------PNQVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAIADLAREEV 373
Query: 500 FEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCA-ESCMYTPVYRNY 558
+ I PP + R IS +A VA A E GVA R + + A E+ ++ P YR
Sbjct: 374 -LEEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARRPIDDEEAYEQALEARLWKPEYRMK 431
Query: 559 R 559
R
Sbjct: 432 R 432
|
Length = 432 |
| >gnl|CDD|214912 smart00919, Malic_M, Malic enzyme, NAD binding domain | Back alignment and domain information |
|---|
Score = 283 bits (727), Expect = 7e-93
Identities = 110/258 (42%), Positives = 143/258 (55%), Gaps = 31/258 (12%)
Query: 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334
QGTA VVLAG++ ALK+ G L + R + GAG AG GIA+L+ K R
Sbjct: 1 QQGTAIVVLAGLLNALKITGKKLEDQRIVVNGAGAAGIGIAKLLVAAGVK---------R 51
Query: 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHEPVNNLLDAVKVIKPTILIGSSGVGRT 392
K I LVDSKGL+ R+D+L +KKP+A L +AVK +LIG SG G
Sbjct: 52 KNIWLVDSKGLLTKGREDNLNPYKKPFARKTNERETGTLEEAVK--GADVLIGVSGPGGA 109
Query: 393 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 452
FT+E++++MA E+P+I ALSNPT + E TA +AY W AI A+G
Sbjct: 110 FTEEMVKSMA---ERPIIFALSNPTPEIEPTAADAYRW--TAAIVATGRSDY-------- 156
Query: 453 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAK--QVTEENFEKGLIYPPFS 510
P Q NN IFPG LG + A R+ D+M LAA+EALA V+EE G I P
Sbjct: 157 --PNQVNNVLIFPGIFLGALDVRARRITDEMKLAAAEALADAVPVSEEELGPGYIIPSPF 214
Query: 511 NIRKISANIAANVAAKAY 528
+ R++SA +A VA A
Sbjct: 215 D-RRVSARVAVAVAKAAI 231
|
Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate. Length = 231 |
| >gnl|CDD|133442 cd00762, NAD_bind_malic_enz, NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Score = 274 bits (701), Expect = 7e-89
Identities = 129/256 (50%), Positives = 170/256 (66%), Gaps = 5/256 (1%)
Query: 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334
IQGTASV +AG++AALK+ ++EH+ LF GAG A GIA LI + + + EE
Sbjct: 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLI-VXLXVKEGISKEEAC 59
Query: 335 KKICLVDSKGLIVSSRK---DSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGR 391
K+I VD KGL+V +RK + H + +A+ +L DAV+ KP LIG S VG
Sbjct: 60 KRIWXVDRKGLLVKNRKETCPNEYHLAR-FANPERESGDLEDAVEAAKPDFLIGVSRVGG 118
Query: 392 TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGK 451
FT EVI A A NE+P+I ALSNPTS++ECTAEEAYT ++GRAIFASGSPF P E NG
Sbjct: 119 AFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGG 178
Query: 452 VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511
+ PGQ NN YIFPG LG+++ + DD+ L+A+EA+A VTEE+ + G +YPP +
Sbjct: 179 TYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238
Query: 512 IRKISANIAANVAAKA 527
I+++S NIA VA A
Sbjct: 239 IQEVSLNIAVAVAKYA 254
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 254 |
| >gnl|CDD|215894 pfam00390, malic, Malic enzyme, N-terminal domain | Back alignment and domain information |
|---|
Score = 244 bits (624), Expect = 2e-78
Identities = 93/180 (51%), Positives = 109/180 (60%), Gaps = 32/180 (17%)
Query: 117 ERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKN 176
+NE LFYKLL ++EE LP+VYTPTVGEACQ I+RRP+GLY S+ GKI ++LKN
Sbjct: 2 GKNEVLFYKLLSTHIEEDLPIVYTPTVGEACQAISEIYRRPRGLYTSIGNLGKIKDILKN 61
Query: 177 WPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS------------- 223
WPE ++VIVVTDGERILGLGDLG GM I GKLALYTA GI PS
Sbjct: 62 WPEEDVRVIVVTDGERILGLGDLGVAGMPIMEGKLALYTAFAGIDPSRVLPIVLDVGTNN 121
Query: 224 -------------------AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKY 264
EY E +DEF+ AVK + IQFEDF NAFE+L +Y
Sbjct: 122 EKLLNDPLYLGLRHKRVRGEEYDEFVDEFVEAVKALFPPFGGIQFEDFGAPNAFEILERY 181
|
Length = 182 |
| >gnl|CDD|133453 cd05311, NAD_bind_2_malic_enz, NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 7e-31
Identities = 86/256 (33%), Positives = 119/256 (46%), Gaps = 35/256 (13%)
Query: 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335
GTA V LAG++ ALKL+G + E + + GAG AG IA L+ A +
Sbjct: 2 HGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLL-------LAAGA--KPE 52
Query: 336 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPT-ILIGSSGVGRTFT 394
I +VDSKG+I R+D L K A E P + +K + IG S G
Sbjct: 53 NIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPG-VVK 111
Query: 395 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA-IFASG-SPFDPFEYNGKV 452
KE+I+ M + P++ AL+NP E EEA + A I A+G S F
Sbjct: 112 KEMIKKM---AKDPIVFALANPV--PEIWPEEA---KEAGADIVATGRSDF--------- 154
Query: 453 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYP-PFSN 511
P Q NN FPG G + A ++ ++M LAA+EA+A EE + I P PF
Sbjct: 155 --PNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD- 211
Query: 512 IRKISANIAANVAAKA 527
++ +A VA A
Sbjct: 212 -PRVVPRVATAVAKAA 226
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 226 |
| >gnl|CDD|183799 PRK12862, PRK12862, malic enzyme; Reviewed | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 6e-20
Identities = 107/382 (28%), Positives = 165/382 (43%), Gaps = 71/382 (18%)
Query: 184 VIVVTDGERILGLGDLGCQGMGIPV--GKLALYTALGG-----IRPSAEYAELLDEFMSA 236
V VV++G +LGLG++G PV GK L+ G I + L E ++A
Sbjct: 73 VAVVSNGTAVLGLGNIGPLA-SKPVMEGKAVLFKKFAGIDVFDIELDESDPDKLVEIVAA 131
Query: 237 VKQNYGEKVLIQFEDFANHNAFELLAKYGTTHL-------VFNDDIQGTASVVLAGVVAA 289
++ +G I ED F + + L VF+DD GTA +V A ++
Sbjct: 132 LEPTFGG---INLEDIKAPECFYIERE-----LRERMKIPVFHDDQHGTAIIVAAALLNG 183
Query: 290 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 349
LKL+G + + + + GAG A +L+ E I + D KG++
Sbjct: 184 LKLVGKDIEDVKLVASGAGAAALACLDLL-----VSLGVKRE----NIWVTDIKGVVYEG 234
Query: 350 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPL 409
R + + +K +A + + L + ++ + +G S E+++ MA +PL
Sbjct: 235 RTELMDPWKARYAQKTD-ARTLAEVIE--GADVFLGLSA-AGVLKPEMVKKMA---PRPL 287
Query: 410 ILALSNPTSQSECTAEEAYTWSKGRAIFASG-SPFDPFEYNGKVFVPGQANNAYIFPGFG 468
I AL+NPT E EEA + AI A+G S + P Q NN FP
Sbjct: 288 IFALANPT--PEILPEEARA-VRPDAIIATGRSDY-----------PNQVNNVLCFPYIF 333
Query: 469 LGLVISGAIRVHDDMLLAASEALAKQVTEENFE------KG---------LIYPPFSNIR 513
G + GA ++++M +AA A+A+ EE + G LI PF + R
Sbjct: 334 RGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPF-DPR 392
Query: 514 KISANIAANVAAKAYELGVATR 535
I IA VA A + GVATR
Sbjct: 393 LI-LKIAPAVAQAAMDSGVATR 413
|
Length = 763 |
| >gnl|CDD|183798 PRK12861, PRK12861, malic enzyme; Reviewed | Back alignment and domain information |
|---|
Score = 88.0 bits (218), Expect = 3e-18
Identities = 118/425 (27%), Positives = 178/425 (41%), Gaps = 76/425 (17%)
Query: 135 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 194
L + YTP V AC+ I P + + R V V+T+G +L
Sbjct: 37 LALAYTPGVASACE---EIAADPLNAF--------------RFTSRGNLVGVITNGTAVL 79
Query: 195 GLGDLGCQGMGIPV--GKLALYTALGGIRP-SAEYAEL----LDEFMSAVKQNYGEKVLI 247
GLG++G PV GK L+ GI E E L + ++ ++ +G I
Sbjct: 80 GLGNIGALA-SKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVDIIAGLEPTFGG---I 135
Query: 248 QFEDFANHNAFELLAKYGTTHL--VFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFL 305
ED F + K VF+DD GTA V A + LK++G ++ E + +
Sbjct: 136 NLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVVGKSIKEVKVVTS 195
Query: 306 GAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 365
GAG A L L++ PVE I + D +G++ R + K+ +A E
Sbjct: 196 GAGAAA-----LACLDLLVDLGLPVEN----IWVTDIEGVVYRGRTTLMDPDKERFAQET 246
Query: 366 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAE 425
+ L + + + +G S G E+++AMA+ +PLILAL+NPT E E
Sbjct: 247 D-ARTLAEVIG--GADVFLGLS-AGGVLKAEMLKAMAA---RPLILALANPT--PEIFPE 297
Query: 426 EAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 485
A+ ++ + A+G +Y P Q NN FP G + GA + +M +
Sbjct: 298 LAHA-TRDDVVIATGRS----DY------PNQVNNVLCFPYIFRGALDVGATTITREMEI 346
Query: 486 AASEALAKQVTEENFE---------------KGLIYPPFSNIRKISANIAANVAAKAYEL 530
AA A+A EE + + LI PF ++ IA VA A E
Sbjct: 347 AAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPKPFDP--RLIVRIAPAVAKAAMEG 404
Query: 531 GVATR 535
GVATR
Sbjct: 405 GVATR 409
|
Length = 764 |
| >gnl|CDD|235976 PRK07232, PRK07232, bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Score = 87.1 bits (217), Expect = 6e-18
Identities = 89/289 (30%), Positives = 136/289 (47%), Gaps = 62/289 (21%)
Query: 270 VFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELI-ALEISKQTKA 328
VF+DD GTA + A ++ AL+L+G + + + + GAG A L+ AL
Sbjct: 156 VFHDDQHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK----- 210
Query: 329 PVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG 388
++ I + DSKG+I R + + +K +A + L +A++ + +G S
Sbjct: 211 -----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVD-TDARTLAEAIE--GADVFLGLS- 261
Query: 389 VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR--AIFASG-SPFDP 445
T E++++MA + P+I AL+NP E T EEA R AI A+G S +
Sbjct: 262 AAGVLTPEMVKSMA---DNPIIFALANPD--PEITPEEAK---AVRPDAIIATGRSDY-- 311
Query: 446 FEYNGKVFVPGQANNA----YIFPGFGLGLVISGAIRVHDDMLLAASEALA----KQVTE 497
P Q NN YIF G L + GA ++++M LAA A+A ++V++
Sbjct: 312 ---------PNQVNNVLCFPYIFRG---ALDV-GATTINEEMKLAAVRAIAELAREEVSD 358
Query: 498 E----------NFEKGLIYP-PFSNIRKISANIAANVAAKAYELGVATR 535
E +F I P PF + R I IA VA A + GVATR
Sbjct: 359 EVAAAYGGQKLSFGPEYIIPKPF-DPRLIVK-IAPAVAKAAMDSGVATR 405
|
Length = 752 |
| >gnl|CDD|133449 cd05191, NAD_bind_amino_acid_DH, NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-08
Identities = 20/49 (40%), Positives = 29/49 (59%)
Query: 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 325
TA+ +A + AA K+ +L + LGAGE G GIA+L+A E K+
Sbjct: 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKK 49
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 86 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| KOG1257 | 582 | consensus NADP+-dependent malic enzyme [Energy pro | 100.0 | |
| PLN03129 | 581 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| PRK13529 | 563 | malate dehydrogenase; Provisional | 100.0 | |
| PTZ00317 | 559 | NADP-dependent malic enzyme; Provisional | 100.0 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 100.0 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 100.0 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 100.0 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 100.0 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 100.0 | |
| PF03949 | 255 | Malic_M: Malic enzyme, NAD binding domain; InterPr | 100.0 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 100.0 | |
| PF00390 | 182 | malic: Malic enzyme, N-terminal domain; InterPro: | 100.0 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 100.0 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 98.85 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.39 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.2 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 97.19 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 97.07 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.01 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.99 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.92 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.86 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 96.8 | |
| PLN02494 | 477 | adenosylhomocysteinase | 96.69 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 96.63 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 96.61 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.61 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 96.4 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 96.22 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 96.05 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.05 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 96.05 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 96.0 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 95.95 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 95.77 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.76 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 95.72 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 95.58 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.55 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.42 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 95.42 | |
| PLN00106 | 323 | malate dehydrogenase | 95.35 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 95.25 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 95.23 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 94.97 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 94.86 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 94.82 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 94.67 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 94.42 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 94.11 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 94.09 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.97 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 93.82 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 93.65 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 93.4 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 93.29 | |
| cd05296 | 419 | GH4_P_beta_glucosidase Glycoside Hydrolases Family | 93.07 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.02 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 92.95 | |
| PRK08328 | 231 | hypothetical protein; Provisional | 92.93 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 92.91 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 92.75 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 92.74 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 92.42 | |
| PRK08223 | 287 | hypothetical protein; Validated | 92.41 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 92.21 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 92.11 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.03 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 92.02 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 91.82 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 91.67 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 91.66 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 91.51 | |
| PLN02928 | 347 | oxidoreductase family protein | 91.39 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 91.32 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 91.27 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 91.13 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 91.08 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 90.88 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 90.8 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 90.64 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 90.33 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 90.32 | |
| PRK07878 | 392 | molybdopterin biosynthesis-like protein MoeZ; Vali | 90.14 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 90.11 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.09 | |
| cd05197 | 425 | GH4_glycoside_hydrolases Glycoside Hydrases Family | 90.07 | |
| PRK15076 | 431 | alpha-galactosidase; Provisional | 90.02 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 90.02 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 90.02 | |
| PF00899 | 135 | ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-a | 89.94 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 89.93 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 89.92 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 89.84 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.72 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.68 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 89.56 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 89.48 | |
| COG0578 | 532 | GlpA Glycerol-3-phosphate dehydrogenase [Energy pr | 89.48 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 89.32 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 89.31 | |
| PRK14851 | 679 | hypothetical protein; Provisional | 89.26 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 89.22 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 88.92 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 88.83 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 88.55 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 88.32 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 88.2 | |
| cd05298 | 437 | GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; | 87.33 | |
| TIGR03140 | 515 | AhpF alkyl hydroperoxide reductase, F subunit. Thi | 87.04 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 86.61 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 86.51 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 86.5 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 86.24 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 86.12 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 86.06 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 86.05 | |
| PRK07411 | 390 | hypothetical protein; Validated | 86.01 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 86.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 85.89 | |
| PRK02842 | 427 | light-independent protochlorophyllide reductase su | 85.63 | |
| PRK08374 | 336 | homoserine dehydrogenase; Provisional | 85.62 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.58 | |
| cd01492 | 197 | Aos1_SUMO Ubiquitin activating enzyme (E1) subunit | 85.56 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.36 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 85.35 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 85.28 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 85.22 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 85.08 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 85.08 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 85.07 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.89 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 84.86 | |
| PRK15317 | 517 | alkyl hydroperoxide reductase subunit F; Provision | 84.84 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 84.63 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 84.5 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 84.45 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 84.45 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 84.38 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 84.28 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 83.95 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.66 | |
| cd01485 | 198 | E1-1_like Ubiquitin activating enzyme (E1), repeat | 83.32 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 83.08 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 83.02 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 82.88 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 82.82 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 82.43 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 82.37 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 82.33 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 82.24 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 82.21 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 82.08 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 81.84 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.79 | |
| PRK15116 | 268 | sulfur acceptor protein CsdL; Provisional | 81.48 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.46 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.42 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 81.42 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.3 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 81.2 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 81.16 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 81.02 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 81.0 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 80.63 | |
| cd00755 | 231 | YgdL_like Family of activating enzymes (E1) of ubi | 80.57 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 80.41 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 80.17 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 80.05 |
| >KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-202 Score=1590.72 Aligned_cols=526 Identities=65% Similarity=1.030 Sum_probs=512.7
Q ss_pred cCcccccccccccc-ccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHH
Q 008629 32 GEDRATEDQLVTPW-TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYV 110 (559)
Q Consensus 32 ~~~~~~~~~~~~~~-~~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~ 110 (559)
++...+..+...+| +.++.+|+++|+||++|||+|||.+||++|||||||||.|+|+|+|++||+.+|+++++||+||+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~g~~ll~~p~~NKglAFTl~ERq~l~i~GLLPp~v~t~d~Q~~r~~~~l~~~~~~l~ky~ 89 (582)
T KOG1257|consen 10 STAPLTLAHRITPRPVESKKRGYDLLRDPRYNKGLAFTLEERQRLGIHGLLPPVVRTQDEQALRCMNNLRSLTSPLAKYI 89 (582)
T ss_pred cCCCccccccccccccccccCChhhccCCCcccccccCHHHHHhhCccccCCccccCHHHHHHHHHHHHHhccchHHHHH
Confidence 33333333333444 66678999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecC
Q 008629 111 AMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDG 190 (559)
Q Consensus 111 ~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG 190 (559)
||++||+|||+|||++|++|++|+||||||||||+|||+||+|||+|+|||||++|+|||.++|+|||.++|++||||||
T Consensus 90 ~L~~L~~rNerLfY~~l~~nie~~~PIvYTPTvG~acq~y~~i~r~p~Glfisi~D~Ghi~~~l~nWp~~~V~~IvVTDG 169 (582)
T KOG1257|consen 90 YLMDLQDRNERLFYRLLIDNIEELLPIVYTPTVGLACQQYGLIFRRPQGLFISIKDKGHIKQVLKNWPERNVKAIVVTDG 169 (582)
T ss_pred HHHHHHHhhhHHHHHHHHhhHHHhCCeeecCcHHHHHHHhhhhhccCceeEEEecccchHHHHHHhCCccceeEEEEeCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecccCCCCCccccchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHH
Q 008629 191 ERILGLGDLGCQGMGIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVK 238 (559)
Q Consensus 191 ~rILGLGDlG~~GmgI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~ 238 (559)
||||||||||++|||||+|||+|||+||||+|++ +|++|+||||+||+
T Consensus 170 erILGLGDlG~~GmgIpvgKL~Lyta~~GI~P~~cLPV~LDVGTNNe~Ll~DplYiGLr~~R~~g~eYd~~~dEFm~Av~ 249 (582)
T KOG1257|consen 170 ERILGLGDLGVNGMGIPVGKLALYTALGGIRPSRCLPVCLDVGTNNEKLLNDPLYIGLRQRRVRGKEYDEFLDEFMEAVV 249 (582)
T ss_pred CceecccccccCcccceecHHHHHHHhcCCChhhceeEEEeccCChHHHhcCccccccccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 99999999999999
Q ss_pred HhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHH
Q 008629 239 QNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELI 318 (559)
Q Consensus 239 ~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll 318 (559)
++|||++|||||||+++|||++|+|||.++|||||||||||+|+|||||+|+|++|++|+|++|||+|||+||+|||+||
T Consensus 250 ~~yG~~~lIqFEDF~~~nAfrlL~kYr~~~c~FNDDIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~ 329 (582)
T KOG1257|consen 250 QRYGPNTLIQFEDFANHNAFRLLEKYRNKYCMFNDDIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLI 329 (582)
T ss_pred HHhCcceEEEehhccchhHHHHHHHhccccceecccccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 008629 319 ALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 398 (559)
Q Consensus 319 ~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 398 (559)
+.+|+++ |+|+|||+++|||+|++|||+++|+.+++++|++||++++++++|+|||+.||||||||+|++||+||||||
T Consensus 330 v~~m~~~-Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~~~~fAk~~~~~~~L~e~V~~vKPtvLiG~S~~~g~Fteevl 408 (582)
T KOG1257|consen 330 VMAMVKE-GLSEEEARKKIWLVDSKGLITKGRKASLTEEKKPFAKDHEEIKDLEEAVKEVKPTVLIGASGVGGAFTEEVL 408 (582)
T ss_pred HHHHHHc-CCCHHHHhccEEEEecCceeeccccCCCChhhccccccChHHHHHHHHHHhcCCcEEEecccCCccCCHHHH
Confidence 9999996 999999999999999999999999878999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcc
Q 008629 399 EAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIR 478 (559)
Q Consensus 399 ~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~ 478 (559)
|+|+++|||||||||||||+++||||||||+||+||||||||||||||+||||+|+||||||+|+|||||||+++|++++
T Consensus 409 ~~Ma~~~erPiIFalSNPT~~aECtae~ay~~t~Gr~ifaSGSPF~pV~~~gK~~~pgQ~NN~yiFPGi~Lg~vlsg~~~ 488 (582)
T KOG1257|consen 409 RAMAKSNERPIIFALSNPTSKAECTAEQAYKWTKGRAIFASGSPFPPVEYNGKVYVPGQGNNAYIFPGIGLGVVLSGARR 488 (582)
T ss_pred HHHHhcCCCceEEecCCCccccccCHHHHhhhcCCcEEEecCCCCCCceeCCcEecccCCceeEecchHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCC
Q 008629 479 VHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558 (559)
Q Consensus 479 Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~ 558 (559)
|+|+||++||++||++++++++++|.||||+++||+||.+||++|+++|+++|+|+..|+|+|+.+|++++||+|+|+++
T Consensus 489 i~D~mfl~Aae~LA~~v~~e~~~~g~lyPpl~~ir~iS~~Ia~aV~~~a~~~glA~~~p~P~d~~~~~~~~~y~~~Y~~~ 568 (582)
T KOG1257|consen 489 IPDEMFLAAAEALAEQVSEEELEKGRLYPPLSNIREISANIAAAVLKYAYEEGLATRYPEPKDKEKFIEESMYNPEYRNS 568 (582)
T ss_pred CCHHHHHHHHHHHHhhCCHhHhhcCCcCCChhHHHHHHHHHHHHHHHHHHhcCccccCCCcccHHHHHHhccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
|
|
| >PLN03129 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-193 Score=1558.17 Aligned_cols=511 Identities=76% Similarity=1.194 Sum_probs=502.8
Q ss_pred cccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHHhh
Q 008629 49 VASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLI 128 (559)
Q Consensus 49 ~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~ 128 (559)
..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||++++
T Consensus 39 ~~~G~~ll~~p~~NKgtaFt~~ER~~lgl~GLlP~~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~ll~ 118 (581)
T PLN03129 39 VASGYDLLRDPRYNKGLAFTETERDRLGLRGLLPPAVLSQELQVKRFMENLRALESPLAKYRALMDLQERNERLFYRVLI 118 (581)
T ss_pred CCcchhhhcCcccccccCCCHHHHhhcCCccCCCCCcCCHHHHHHHHHHHHhccCCcHHHHHHHHHHHhhCcccchhhhh
Confidence 56999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccchh
Q 008629 129 DNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPV 208 (559)
Q Consensus 129 ~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~i 208 (559)
+|++|+||||||||||+||++||++||+|||||||++|+|+|+++|+|||.++|++||||||||||||||||++||||||
T Consensus 119 ~~~~e~lpiiYTPtVg~ac~~~s~~~r~prGlyis~~d~~~i~~~l~n~p~~~v~viVVTDG~rILGLGDlG~~Gm~I~~ 198 (581)
T PLN03129 119 DNIEELLPIVYTPTVGEACQKYGSLFRRPRGLYISLKDKGRVLSMLKNWPERDVQVIVVTDGERILGLGDLGVQGMGIPV 198 (581)
T ss_pred cCHHHhCCeeeCCcHHHHHHHHHHhhcCCCceeecccCHHHHHHHHhcCCCcCceEEEEecCcceeeccccCCCccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCc
Q 008629 209 GKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHN 256 (559)
Q Consensus 209 GKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~ 256 (559)
||++|||+||||||.+ +|++|+||||++|+.+|||+++||||||+++|
T Consensus 199 GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~LL~DP~YlG~r~~Rv~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~ 278 (581)
T PLN03129 199 GKLDLYTAAGGIRPSAVLPVCIDVGTNNEKLLNDPFYIGLRQPRLTGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKN 278 (581)
T ss_pred hHHHHHHhhcCCChhhccceEEecCCCchhhccCccccCcCCCCCchhhHHHhHHHHHHHHHHHhCCccEEehhhcCCcc
Confidence 9999999999999987 89999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 257 AFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 257 Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++.|+|+|||+++
T Consensus 279 af~iL~ryr~~i~~FnDDiQGTaaV~lAgll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~ 358 (581)
T PLN03129 279 AFRLLQRYRTTHLCFNDDIQGTAAVALAGLLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKR 358 (581)
T ss_pred HHHHHHHhccCCCEeccccchHHHHHHHHHHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999987569999999999
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
||++|++|||+++|.++|+++|++||++.++..+|+|+|+.+|||||||+|+++|+|||||||+|+++|+||||||||||
T Consensus 359 i~~vD~~GLi~~~r~~~l~~~k~~fa~~~~~~~~L~e~v~~vkptvLIG~S~~~g~Ft~evi~~Ma~~~~rPIIFaLSNP 438 (581)
T PLN03129 359 IWLVDSKGLVTKSRKDSLQPFKKPFAHDHEPGASLLEAVKAIKPTVLIGLSGVGGTFTKEVLEAMASLNERPIIFALSNP 438 (581)
T ss_pred EEEEcCCCeEeCCCCccChHHHHHHHhhcccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCC
Confidence 99999999999999766999999999987777899999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 008629 417 TSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 417 t~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
|++|||||||||+||+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++
T Consensus 439 t~~~E~~pe~a~~~T~G~ai~AtGSPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~Itd~m~~aAA~aLA~~v~ 518 (581)
T PLN03129 439 TSKAECTAEEAYTWTGGRAIFASGSPFDPVEYNGKTFHPGQANNAYIFPGIGLGALLSGAIRVTDDMLLAAAEALAAQVT 518 (581)
T ss_pred CCCcCcCHHHHHHhhcCCEEEEeCCCCCCeeeCCeeecCccccceeeccchhhHHHhcCCcCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 497 EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 497 ~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
++++..+.|||++++||+||.+||+||+++|+++|+|+..++|+++.+||+++||+|+|+|++
T Consensus 519 ~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~G~A~~~~~~~~~~~~i~~~mw~P~Y~~~~ 581 (581)
T PLN03129 519 EEELAKGAIYPPFSRIRDISAHVAAAVAAKAYEEGLATRLPRPEDLVEYAESCMYSPVYRPYR 581 (581)
T ss_pred cccCCCCeecCCCcchhHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHcCcCCCCCCCC
Confidence 999999999999999999999999999999999999987777899999999999999999975
|
|
| >PRK13529 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-193 Score=1555.63 Aligned_cols=509 Identities=49% Similarity=0.838 Sum_probs=498.1
Q ss_pred cccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHH
Q 008629 47 ISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKL 126 (559)
Q Consensus 47 ~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~l 126 (559)
.+..+|.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||+|||+||||+
T Consensus 12 ~~~~~G~~lL~~p~~NKgtaFt~~ER~~lgl~GLLPp~v~t~e~Q~~R~~~~~~~~~~~l~ky~~L~~L~~~Ne~Lfy~l 91 (563)
T PRK13529 12 YTPLRGPALLNNPLLNKGTAFTEEEREEFGLEGLLPPAVETLEEQAERAYRQYQSKPTDLEKHIYLRNLQDRNETLFYRL 91 (563)
T ss_pred eecccchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhcCCChHHHHHHHHHHHhcCchhhHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccc
Q 008629 127 LIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGI 206 (559)
Q Consensus 127 l~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI 206 (559)
|++|++|+||||||||||+|||+||++||+|||||||++|+|+|.++|+|||.++|++||||||||||||||||++||||
T Consensus 92 l~~~~ee~~PivYTPTVG~ac~~~s~~~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm~I 171 (563)
T PRK13529 92 LSDHLEEMMPIIYTPTVGEACERFSHIYRRPRGLFISYDDRDRIEDILQNAPNRDIKLIVVTDGERILGIGDQGIGGMGI 171 (563)
T ss_pred HHhCHHHhCCeeecccHHHHHHHHhhcccCCCceEeccCCHHHHHHHHhcCCcccceEEEEeCCceeeeccccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCC
Q 008629 207 PVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFAN 254 (559)
Q Consensus 207 ~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~ 254 (559)
||||++|||+||||||.+ +|++|+||||++|+.+| |+++||||||++
T Consensus 172 ~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnNe~Ll~DP~YlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~ 250 (563)
T PRK13529 172 PIGKLSLYTACGGIDPARTLPVVLDVGTNNEQLLNDPLYLGWRHPRIRGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQ 250 (563)
T ss_pred cccHHHHhhccCCCChhheeceEEecCCCchhhccCccccCcCCCCCchHHHHHHHHHHHHHHHHhC-CCeEEehhhcCC
Confidence 999999999999999987 89999999999999999 999999999999
Q ss_pred CcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 008629 255 HNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334 (559)
Q Consensus 255 ~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~ 334 (559)
+|||+||+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+|||+
T Consensus 251 ~~af~iL~ryr~~i~~FnDDiQGTaaV~LAgll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~-~Gl~~eeA~ 329 (563)
T PRK13529 251 KNARRILERYRDEICTFNDDIQGTGAVTLAGLLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVR-EGLSEEEAR 329 (563)
T ss_pred chHHHHHHHhccCCCeeccccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhHhc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999997 599999999
Q ss_pred ccEEEEcccCccccCCcCCCchhchhhccccCCC---------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 008629 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 405 (559)
Q Consensus 335 ~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~---------~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 405 (559)
++||++|++|||+++|.+ |+++|++|||+.++. .+|+|+|+.+|||||||+|+++|+|||||||+|+++|
T Consensus 330 ~~i~~vD~~GLl~~~r~~-l~~~k~~fa~~~~~~~~~~~~~~~~~L~e~v~~~kPtvLIG~S~~~g~Ft~evv~~Ma~~~ 408 (563)
T PRK13529 330 KRFFMVDRQGLLTDDMPD-LLDFQKPYARKREELADWDTEGDVISLLEVVRNVKPTVLIGVSGQPGAFTEEIVKEMAAHC 408 (563)
T ss_pred CeEEEEcCCCeEeCCCCc-chHHHHHHhhhcccccccccccCCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcC
Confidence 999999999999999965 999999999975542 5899999999999999999999999999999999999
Q ss_pred CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHH
Q 008629 406 EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLL 485 (559)
Q Consensus 406 erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~ 485 (559)
||||||||||||++|||||||||+||+|||||||||||+||+|+|++++||||||+|||||||||+++++|++|||+||+
T Consensus 409 erPIIFaLSNPt~~aE~tpe~a~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglGa~~~~a~~Itd~m~~ 488 (563)
T PRK13529 409 ERPIIFPLSNPTSRAEATPEDLIAWTDGRALVATGSPFAPVEYNGKTYPIGQCNNAYIFPGLGLGVIASGARRVTDGMLM 488 (563)
T ss_pred CCCEEEECCCcCCCcccCHHHHHHhhcCCEEEEECCCCCCeeeCCeEeccCcCcceeecccchhhhhhcCCcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 486 AASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 486 aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
+||++||+++++++++++.|||++++||+||.+||.||+++|+++|+|+. ++|+|+.+||+++||+|+|+|++
T Consensus 489 aAA~alA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GlA~~-~~~~~~~~~i~~~~w~P~Y~~~~ 561 (563)
T PRK13529 489 AAAHALADCVPLAKPGEGALLPPVEDIREVSRAIAIAVAKAAIEEGLARE-TSDEDLEQAIEDNMWQPEYRPYR 561 (563)
T ss_pred HHHHHHHhhCccccCCCCeeECCCcchhhhHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHhcCcCCCCcccc
Confidence 99999999999999999999999999999999999999999999999984 67899999999999999999974
|
|
| >PTZ00317 NADP-dependent malic enzyme; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-191 Score=1535.04 Aligned_cols=508 Identities=49% Similarity=0.827 Sum_probs=494.5
Q ss_pred cccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhH
Q 008629 45 WTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFY 124 (559)
Q Consensus 45 ~~~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy 124 (559)
...+..+|.++|+||++|||||||.+||++|||||||||+|+|+|+|++|||.||+++++||+||+||++||+|||+|||
T Consensus 12 ~~~~~~~G~~lL~~p~~NKgtAFt~~ER~~l~l~GLlPp~v~t~e~Q~~R~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy 91 (559)
T PTZ00317 12 KVPSNARGVDVLRNRFLNKGTAFTAEEREHLGIEGLLPPTVETLEQQVERLWTQFNRIETPINKYQFLRNIHDTNETLFY 91 (559)
T ss_pred ccccCCcchhhhcCcccccccCCCHHHHHhcCCCCCCCCCccCHHHHHHHHHHHHhhCCChHHHHHHHHHHhhcCchHHH
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccc
Q 008629 125 KLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGM 204 (559)
Q Consensus 125 ~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~Gm 204 (559)
++|++|++||||||||||||+||++||++||+|||||+|++|+|+|+++|+|||.++|++||||||||||||||||++||
T Consensus 92 ~ll~~~~ee~lpivYTPtVg~ac~~~s~~~r~p~Gly~s~~drg~i~~~l~Nwp~~~v~viVVTDG~rILGLGDlG~~Gm 171 (559)
T PTZ00317 92 ALLLKYLKELLPIIYTPTVGEACQNYSNLFQRDRGLYLSRAHKGKIREILKNWPYDNVDVIVITDGSRILGLGDLGANGM 171 (559)
T ss_pred HHHHhCHHHhcceecCcchHHHHHHHHhcccccCceEEeecCcchHHHHHhcCCccCceEEEEeccccccccCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccC
Q 008629 205 GIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDF 252 (559)
Q Consensus 205 gI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf 252 (559)
|||+||++|||+||||||.+ +|++|+||||+||+++| |+++||||||
T Consensus 172 ~I~~GKl~Ly~a~aGI~P~~~lPI~LDvGTnN~~LL~DPlYlG~r~~R~~g~eY~~f~defv~av~~~~-P~~~Iq~EDf 250 (559)
T PTZ00317 172 GISIGKLSLYVAGGGINPSRVLPVVLDVGTNNEKLLNDPLYLGLREKRLDDDEYYELLDEFMEAVSSRW-PNAVVQFEDF 250 (559)
T ss_pred cccccHHHHHHhhcCCChhhccceEEecCCChhhhccCcccccccCCCCChhhHHHHHHHHHHHHHHhC-CCeEEehhhc
Confidence 99999999999999999988 89999999999999999 9999999999
Q ss_pred CCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 008629 253 ANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 332 (559)
Q Consensus 253 ~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~ee 332 (559)
+++|||++|+|||+++|||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||
T Consensus 251 ~~~naf~iL~kyr~~i~~FnDDiQGTaaV~lAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~-~Gls~ee 329 (559)
T PTZ00317 251 SNNHCFDLLERYQNKYRCFNDDIQGTGAVIAAGFLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAE-YGVTREE 329 (559)
T ss_pred CCccHHHHHHHhccCCCEecccchhHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987 5999999
Q ss_pred hcccEEEEcccCccccCCcCCCchhchhhcccc--CC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCC
Q 008629 333 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEK 407 (559)
Q Consensus 333 A~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~er 407 (559)
|++|||++|++|||+++|.++|+++|++||++. ++ ..+|+|||+.+|||||||+|+++|+|||||||+|+++|+|
T Consensus 330 A~~~i~~vD~~GLl~~~r~~~l~~~k~~fa~~~~~~~~~~~~~L~e~v~~~KPtvLIG~S~~~g~Ft~evv~~Ma~~~~r 409 (559)
T PTZ00317 330 ALKSFYLVDSKGLVTTTRGDKLAKHKVPFARTDISAEDSSLKTLEDVVRFVKPTALLGLSGVGGVFTEEVVKTMASNVER 409 (559)
T ss_pred hcCeEEEEcCCCeEeCCCCccccHHHHHHhccccccccccCCCHHHHHhccCCCEEEEecCCCCCCCHHHHHHHHhcCCC
Confidence 999999999999999999766999999999974 33 5699999999999999999999999999999999999999
Q ss_pred cEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHH
Q 008629 408 PLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAA 487 (559)
Q Consensus 408 PIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aA 487 (559)
||||||||||++|||||||||+||+|||||||||||+||+||||+++||||||+|||||||||+++++|++|||+||++|
T Consensus 410 PIIFaLSNPt~~aE~tpeda~~~T~Grai~AtGspf~pv~~~G~~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~m~~aA 489 (559)
T PTZ00317 410 PIIFPLSNPTSKAECTAEDAYKWTNGRAIVASGSPFPPVTLNGKTIQPSQGNNLYVFPGVGLGCAIAQPSYIPDEMLIAA 489 (559)
T ss_pred CEEEECCCCCCCCCcCHHHHHhhccCCEEEEECCCCCCcccCCeeeccCcCcceeeccchhhhhHhhcccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCC--CCC-chhHHHHHHhCCcccC
Q 008629 488 SEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATR--LPR-PQNLVKCAESCMYTPV 554 (559)
Q Consensus 488 A~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~--~~~-~~d~~~~i~~~m~~P~ 554 (559)
|++||+++++++++.+.|||++++||+||.+||+||+++|+++|+|+. .|+ ++|+.+||+++||+|.
T Consensus 490 A~aLA~~v~~~~l~~~~l~P~~~~ir~vs~~VA~aV~~~A~~~G~A~~~~~~~~~~~~~~~i~~~~w~P~ 559 (559)
T PTZ00317 490 AASLATLVSEEDLREGKLYPPLEDIREISAHIAVDVIEEAQEMGIAKNKDLPDNRDELLALVKDRMWVPK 559 (559)
T ss_pred HHHHHhhCCccccCCCeeeCCCccHhHHHHHHHHHHHHHHHHhCCCccCCCCCCHHHHHHHHHhcCcCCC
Confidence 999999999999999999999999999999999999999999999985 344 3689999999999995
|
|
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-115 Score=915.90 Aligned_cols=420 Identities=36% Similarity=0.522 Sum_probs=375.5
Q ss_pred cccHHHHHHHHHHHHhcCCC-chhHHHHHHHhHhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCccccc
Q 008629 85 VISQQLQEKKLMNSIRQYEV-PLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYIS 163 (559)
Q Consensus 85 v~t~e~Q~~r~~~~~~~~~~-~l~Ky~~L~~L~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis 163 (559)
++|+| |.+|++.++..+.+ +|++|.|+ ++|+.+||.++-.|..|+|||+||||||++|++||+.|++++
T Consensus 1 v~t~~-q~~~~~~~~~~~~~~aL~~h~~~----~~gki~~~~~~~~~~~~dl~l~YTPgVa~~~~~i~~d~~~~~----- 70 (432)
T COG0281 1 VETIE-QAERAYEQYEQLKTEALDKHEYL----DPGKILIYPTVPLHTQEDLPLAYTPGVAEACKAISEDPRKAY----- 70 (432)
T ss_pred CccHH-HHHHHHHHHhhhhhhhHHHhccC----CCCeEEEEEcccccCHhhcCcccCCchHHHHHHHHhCcchhh-----
Confidence 57899 99999999999888 99999999 899999999999999999999999999999999998888874
Q ss_pred ccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCC-CccccchhHHHHHHhHhcCCCCCc-----chhHhHHHHHHHH
Q 008629 164 LKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG-CQGMGIPVGKLALYTALGGIRPSA-----EYAELLDEFMSAV 237 (559)
Q Consensus 164 ~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG-~~GmgI~iGKl~LY~a~gGI~P~~-----~y~~~vdefv~av 237 (559)
.++.++++|||||||||||||||+| ..||||||||++|||+|||||..+ ...+-+++||+++
T Consensus 71 ------------~yt~~~n~vaVvTDgtaVLGLGniGp~ag~pVmeGKa~Lfk~faGid~~pI~ld~~~~~ei~~~Vkal 138 (432)
T COG0281 71 ------------SYTARGNLVAVVTDGTAVLGLGNIGPLAGKPVMEGKAVLFKAFAGIDVLPIELDVGTNNEIIEFVKAL 138 (432)
T ss_pred ------------hcCCCCceEEEEECCceeecccccccccCcchhhhHHHHHHHhcCCCceeeEeeCCChHHHHHHHHHh
Confidence 2667777999999999999999999 578999999999999999999988 3333488999999
Q ss_pred HHhhCCCeeeeeccCCCCcHHHHHH--HHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHH
Q 008629 238 KQNYGEKVLIQFEDFANHNAFELLA--KYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIA 315 (559)
Q Consensus 238 ~~~fGp~~lIq~EDf~~~~Af~lL~--ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia 315 (559)
.++||. |++||++.|+||.+++ ||+.+||||||||||||+|+||||+||+|++|++|+|+||||+|||+||+||+
T Consensus 139 ~p~Fgg---inLedi~ap~cf~ie~~lr~~~~IPvFhDDqqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia 215 (432)
T COG0281 139 EPTFGG---INLEDIDAPRCFAIEERLRYRMNIPVFHDDQQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIA 215 (432)
T ss_pred hhcCCC---cceeecccchhhHHHHHHhhcCCCCcccccccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHH
Confidence 999966 6666666677766555 55679999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC-CCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCC
Q 008629 316 ELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD-SLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTF 393 (559)
Q Consensus 316 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~-~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~F 393 (559)
+||+.++++ +++||+||++|+|+++|.+ .++++|..+|. +.....+ .+++ .+||||||+|++ |+|
T Consensus 216 ~~l~~~g~~---------~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~--~~adv~iG~S~~-G~~ 282 (432)
T COG0281 216 DLLVAAGVK---------EENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLAL--AGADVLIGVSGV-GAF 282 (432)
T ss_pred HHHHHhCCC---------cccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccc--cCCCEEEEcCCC-CCc
Confidence 999997443 2899999999999999975 36778877875 4444442 4444 479999999998 899
Q ss_pred CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHH
Q 008629 394 TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVI 473 (559)
Q Consensus 394 t~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~ 473 (559)
|+|+||+|+ ++|||||||||| +|++||||.+|++|++|+|||| +++|||+||+|+|||||+|+|+
T Consensus 283 t~e~V~~Ma---~~PiIfalaNP~--pEi~Pe~a~~~~~~aaivaTGr----------sd~PnQvNNvL~FPgIfrGaLd 347 (432)
T COG0281 283 TEEMVKEMA---KHPIIFALANPT--PEITPEDAKEWGDGAAIVATGR----------SDYPNQVNNVLIFPGIFRGALD 347 (432)
T ss_pred CHHHHHHhc---cCCEEeecCCCC--ccCCHHHHhhcCCCCEEEEeCC----------CCCcccccceeEcchhhhhhHh
Confidence 999999999 559999999999 9999999999999999999996 5666699999999999999999
Q ss_pred hCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCc-hhHHHHHHhCCcc
Q 008629 474 SGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRP-QNLVKCAESCMYT 552 (559)
Q Consensus 474 ~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~-~d~~~~i~~~m~~ 552 (559)
+||++|||+|++|||+|||+++.++.+ .+.|+|++++.|.+|. ||.||+++|.++|+|+..+.+ +++.++++..+|.
T Consensus 348 ~rA~~ItdeM~~AAa~AiA~~~~~~~~-~~~iiP~~~d~r~~~~-vA~AVa~aA~~~GvA~~~~~~~~~~~~~~~~~~~~ 425 (432)
T COG0281 348 VRAKTITDEMKIAAAEAIADLAREEVL-EEYIIPPPFDPRVISR-VAVAVAKAAMEEGVARRPIDDEEAYEQALEARLWK 425 (432)
T ss_pred hccccCCHHHHHHHHHHHHhhccccCC-cCCCCCCCCchhHHHH-HHHHHHHHHHHcCCccCCCCCHHHHHHHHHHHhcC
Confidence 999999999999999999999987655 7899999999999998 999999999999999965544 4699999999999
Q ss_pred cCCCCCC
Q 008629 553 PVYRNYR 559 (559)
Q Consensus 553 P~Y~~~~ 559 (559)
|.|.+++
T Consensus 426 ~~~~~~~ 432 (432)
T COG0281 426 PEYRMKR 432 (432)
T ss_pred cccccCC
Confidence 9998763
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-109 Score=926.23 Aligned_cols=364 Identities=31% Similarity=0.477 Sum_probs=333.7
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCcc-ccchhHH
Q 008629 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (559)
Q Consensus 132 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (559)
.+.|.++|||||+++|++ |+++|+++|- |+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 34 ~~dl~l~YtPgVa~~c~~---i~~~p~~~~~--------------~t~r~n~v~VvtdG~~vLGLGdiG~~a~~pvmeGK 96 (764)
T PRK12861 34 QRDLALAYTPGVASACEE---IAADPLNAFR--------------FTSRGNLVGVITNGTAVLGLGNIGALASKPVMEGK 96 (764)
T ss_pred hHHceeecCCchHHHHHH---HHhChHhhhh--------------hhccCcEEEEEecchhhccCCCcCcccccchHHHH
Confidence 466999999999999999 8999999863 566667799999999999999999997 9999999
Q ss_pred HHHHhHhcCCCCCc------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcC--CCCeeecCCcchhHHH
Q 008629 211 LALYTALGGIRPSA------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT--THLVFNDDIQGTASVV 282 (559)
Q Consensus 211 l~LY~a~gGI~P~~------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~--~~~~FnDDiQGTaaV~ 282 (559)
++|||+|||||..+ .-++|+ |||++++++||. ||||||++||||+||+|||+ +||||||||||||+|+
T Consensus 97 ~~L~~~~agid~~di~~~~~dpd~~v-~~v~a~~~~fg~---i~lED~~~p~~f~il~~~~~~~~ipvf~DD~qGTa~v~ 172 (764)
T PRK12861 97 AVLFKKFAGIDVFDIEINETDPDKLV-DIIAGLEPTFGG---INLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITV 172 (764)
T ss_pred HHHHhhccCCCccccccCCCCHHHHH-HHHHHHHhhcCC---ceeeeccCchHHHHHHHHHhcCCCCeeccccchHHHHH
Confidence 99999999999887 567888 999999999977 99999999999999999998 6999999999999999
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
||||+||+|++|++|+||||||+|||+||+|||++|+. .|+++| +||++|++|||+++|.+.|+++|++||
T Consensus 173 lA~llnal~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~-----~G~~~~----~i~~~D~~Gli~~~r~~~l~~~k~~~a 243 (764)
T PRK12861 173 SAAFINGLKVVGKSIKEVKVVTSGAGAAALACLDLLVD-----LGLPVE----NIWVTDIEGVVYRGRTTLMDPDKERFA 243 (764)
T ss_pred HHHHHHHHHHhCCChhHcEEEEECHhHHHHHHHHHHHH-----cCCChh----hEEEEcCCCeeeCCCcccCCHHHHHHH
Confidence 99999999999999999999999999999999999976 499854 999999999999999766999999999
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC
Q 008629 363 HEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP 442 (559)
Q Consensus 363 ~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSP 442 (559)
++. +..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+||||++ |+|+||||||
T Consensus 244 ~~~-~~~~L~eai~~--advliG~S~-~g~ft~e~v~~Ma---~~PIIFaLsNPt--pE~~pe~a~~-~~g~aivaTG-- 311 (764)
T PRK12861 244 QET-DARTLAEVIGG--ADVFLGLSA-GGVLKAEMLKAMA---ARPLILALANPT--PEIFPELAHA-TRDDVVIATG-- 311 (764)
T ss_pred hhc-CCCCHHHHHhc--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEECCCCC--ccCCHHHHHh-cCCCEEEEeC--
Confidence 985 45799999997 899999998 8999999999998 599999999999 8999999987 9999999997
Q ss_pred CCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccC------------CCc--ccCC
Q 008629 443 FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFE------------KGL--IYPP 508 (559)
Q Consensus 443 F~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~------------~~~--l~P~ 508 (559)
|+++|||+||+|+|||||||+++++|++|||+|+++||++||++++++++. .+. |+|+
T Consensus 312 --------rs~~pnQ~NN~l~FPgi~~Gal~~~a~~I~~~M~~aAa~alA~~~~~~~~~~~~~~~~~~~~~~~~~~iiP~ 383 (764)
T PRK12861 312 --------RSDYPNQVNNVLCFPYIFRGALDVGATTITREMEIAAVHAIAGLAEEEQNDVVAAAYGAYDVSFGPQYLIPK 383 (764)
T ss_pred --------CcCCCCccceeeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhCCcccCHHHHHhhccccccCCCCCCCCC
Confidence 899999999999999999999999999999999999999999999987533 444 4495
Q ss_pred CCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHh
Q 008629 509 FSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 548 (559)
Q Consensus 509 ~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~ 548 (559)
..+ ++||.+||.||+++|+++|+|+. +. +|+.+|+++
T Consensus 384 ~~~-~~v~~~VA~aVa~~a~~~GvA~~-~~-~~~~~~~~~ 420 (764)
T PRK12861 384 PFD-PRLIVRIAPAVAKAAMEGGVATR-PI-ADLDAYVEQ 420 (764)
T ss_pred CCC-hhHHHHHHHHHHHHHHHhCCCCC-Cc-hhHHHHHHH
Confidence 555 78999999999999999999985 32 567776654
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-109 Score=927.91 Aligned_cols=367 Identities=29% Similarity=0.430 Sum_probs=339.4
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCcc-ccchhHH
Q 008629 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG-MGIPVGK 210 (559)
Q Consensus 132 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G-mgI~iGK 210 (559)
.+.|.++|||||+++|++ |+++|+++|- |+.+.+.|+|||||||||||||+|++| |||||||
T Consensus 38 ~~dl~~~ytpgv~~~~~~---i~~~~~~~~~--------------~t~~~n~v~vvtdg~~vLGlGd~G~~~~~pv~egK 100 (763)
T PRK12862 38 QRDLALAYSPGVAAPCLE---IAADPANAAR--------------YTSRGNLVAVVSNGTAVLGLGNIGPLASKPVMEGK 100 (763)
T ss_pred HHHceeeeCCchHHHHHH---HHhChHhhhh--------------cccCCcEEEEEechhhhccccccCcccccchHHHH
Confidence 456999999999999999 7899988883 777888999999999999999999997 9999999
Q ss_pred HHHHhHhcCCCCCc--chhHhHHHHHHHHHHhhCCC-eeeeeccCCCCcHHHHHHHHcCC--CCeeecCCcchhHHHHHH
Q 008629 211 LALYTALGGIRPSA--EYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNAFELLAKYGTT--HLVFNDDIQGTASVVLAG 285 (559)
Q Consensus 211 l~LY~a~gGI~P~~--~y~~~vdefv~av~~~fGp~-~lIq~EDf~~~~Af~lL~ryr~~--~~~FnDDiQGTaaV~LAg 285 (559)
++|||+|||||..+ ...+..||||++|+.+| |+ ..||||||++||||+||+|||++ ||||||||||||+|+|||
T Consensus 101 ~~l~~~~~gi~~~~i~~~~~d~d~~v~~v~~~~-p~f~~i~~ED~~~~~~f~i~~~~~~~~~ip~f~DD~~GTa~v~la~ 179 (763)
T PRK12862 101 AVLFKKFAGIDVFDIELDESDPDKLVEIVAALE-PTFGGINLEDIKAPECFYIERELRERMKIPVFHDDQHGTAIIVAAA 179 (763)
T ss_pred HHHHHhhcCCCccccccCCCCHHHHHHHHHHhC-CCcceeeeecccCchHHHHHHHHHhcCCCceEecCcccHHHHHHHH
Confidence 99999999999777 33446899999999999 88 89999999999999999999986 899999999999999999
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc
Q 008629 286 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 365 (559)
Q Consensus 286 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~ 365 (559)
|+||+|++|++|+|+||||+|||+||+|||+||+. .|+++ +|||+||++|||+++|.+.|+++|++||++.
T Consensus 180 l~~a~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~~----~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~ 250 (763)
T PRK12862 180 LLNGLKLVGKDIEDVKLVASGAGAAALACLDLLVS-----LGVKR----ENIWVTDIKGVVYEGRTELMDPWKARYAQKT 250 (763)
T ss_pred HHHHHHHhCCChhhcEEEEEChhHHHHHHHHHHHH-----cCCCc----ccEEEEcCCCeeeCCCCccccHHHHHHhhhc
Confidence 99999999999999999999999999999999987 39874 7999999999999999766999999999985
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCC
Q 008629 366 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP 445 (559)
Q Consensus 366 ~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~p 445 (559)
+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+|||||+||+| ||||||
T Consensus 251 -~~~~l~e~~~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a~~~~~~-~i~atG----- 315 (763)
T PRK12862 251 -DARTLAEVIEG--ADVFLGLSA-AGVLKPEMVKKMA---PRPLIFALANPT--PEILPEEARAVRPD-AIIATG----- 315 (763)
T ss_pred -ccCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEeCCCCc--ccCCHHHHHHhcCC-EEEEEC-----
Confidence 45799999998 999999999 8999999999998 999999999999 89999999999999 999998
Q ss_pred ceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccc--------------cCCCcccCCCCC
Q 008629 446 FEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEEN--------------FEKGLIYPPFSN 511 (559)
Q Consensus 446 v~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~--------------~~~~~l~P~~~~ 511 (559)
|+++|||+||+|+|||||||+++++|++|||+|+++||++||+++++++ +...+|||+..+
T Consensus 316 -----rs~~p~Q~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~i~P~~~~ 390 (763)
T PRK12862 316 -----RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKIAAVRAIAELAREEQSDVVAAAYGGEDLSFGPDYLIPKPFD 390 (763)
T ss_pred -----CcCCCCcccceeeccchhhhHHhcCCeeCCHHHHHHHHHHHHhcccccCCHHHHHhhccccccCCCCcccCCCCC
Confidence 8999999999999999999999999999999999999999999999873 445569996666
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHh
Q 008629 512 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAES 548 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~ 548 (559)
++||..||.||+++|+++|+|+. + .+|+.+|+++
T Consensus 391 -~~v~~~va~aVa~~a~~~g~a~~-~-~~~~~~~~~~ 424 (763)
T PRK12862 391 -PRLILKIAPAVAQAAMDSGVATR-P-IEDMDAYREQ 424 (763)
T ss_pred -hhHHHHHHHHHHHHHHHhCCCCC-C-chhHHHHHHH
Confidence 88999999999999999999985 3 3467777664
|
|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-108 Score=915.41 Aligned_cols=366 Identities=31% Similarity=0.473 Sum_probs=337.5
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCc-cccchhHH
Q 008629 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGK 210 (559)
Q Consensus 132 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGK 210 (559)
.+.|+++||||||++|++ |+++|+++| ++.+|| +.|+|||||||||||||+|++ |||||+||
T Consensus 30 ~~dl~~~Ytpgv~~~c~~---i~~~~~~~~-~~t~~~-------------n~v~vvtdg~~vLGlGd~G~~a~~pv~egK 92 (752)
T PRK07232 30 QRDLSLAYSPGVAAPCLE---IAKDPADAY-KYTARG-------------NLVAVISNGTAVLGLGNIGALASKPVMEGK 92 (752)
T ss_pred hhhcceecCCchHHHHHH---HHhChhhcc-ccccCC-------------cEEEEEccchhhccccccccccCccHHHHH
Confidence 466999999999999996 889999999 555554 569999999999999999999 79999999
Q ss_pred HHHHhHhcCCCCCc--chhHhHHHHHHHHHHhhCCCe-eeeeccCCCCcHHHHHHHHcCC--CCeeecCCcchhHHHHHH
Q 008629 211 LALYTALGGIRPSA--EYAELLDEFMSAVKQNYGEKV-LIQFEDFANHNAFELLAKYGTT--HLVFNDDIQGTASVVLAG 285 (559)
Q Consensus 211 l~LY~a~gGI~P~~--~y~~~vdefv~av~~~fGp~~-lIq~EDf~~~~Af~lL~ryr~~--~~~FnDDiQGTaaV~LAg 285 (559)
++|||+|||||..+ ...+.+||||++|+..| |.. +||||||++||||+||+|||++ ||||||||||||+|+|||
T Consensus 93 ~~l~~~~~gid~~~i~~~~~d~de~v~~v~~~~-p~~g~i~~ED~~~p~~f~i~~~~~~~~~ip~f~DD~~GTa~v~lA~ 171 (752)
T PRK07232 93 GVLFKKFAGIDVFDIEVDEEDPDKFIEAVAALE-PTFGGINLEDIKAPECFYIEEKLRERMDIPVFHDDQHGTAIISAAA 171 (752)
T ss_pred HHHHHhhcCCCccccccCCCCHHHHHHHHHHhC-CCccEEeeeecCCchHHHHHHHHHHhcCCCeeccccchHHHHHHHH
Confidence 99999999999988 33446999999999999 664 9999999999999999999985 899999999999999999
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc
Q 008629 286 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 365 (559)
Q Consensus 286 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~ 365 (559)
|+||+|++|++|+|+||||+|||+||+|||+||+. .|++ +++||++|++|||+++|.++|+++|++||++
T Consensus 172 l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~-----~G~~----~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~- 241 (752)
T PRK07232 172 LLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVA-----LGAK----KENIIVCDSKGVIYKGRTEGMDEWKAAYAVD- 241 (752)
T ss_pred HHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHH-----cCCC----cccEEEEcCCCeecCCCcccccHHHHHHhcc-
Confidence 99999999999999999999999999999999986 3987 6899999999999999966699999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCC
Q 008629 366 EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDP 445 (559)
Q Consensus 366 ~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~p 445 (559)
.+..+|+|+|+. ||||||+|+ +|+||+|+|++|+ +||||||||||| |||+||||++||+| +|||||
T Consensus 242 ~~~~~l~~~i~~--~~v~iG~s~-~g~~~~~~v~~M~---~~piifalsNP~--~E~~p~~a~~~~~~-~i~atG----- 307 (752)
T PRK07232 242 TDARTLAEAIEG--ADVFLGLSA-AGVLTPEMVKSMA---DNPIIFALANPD--PEITPEEAKAVRPD-AIIATG----- 307 (752)
T ss_pred CCCCCHHHHHcC--CCEEEEcCC-CCCCCHHHHHHhc---cCCEEEecCCCC--ccCCHHHHHHhcCC-EEEEEC-----
Confidence 445799999998 999999999 8999999999998 799999999999 89999999999999 999998
Q ss_pred ceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCcc--------------ccCCCcccCCCCC
Q 008629 446 FEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE--------------NFEKGLIYPPFSN 511 (559)
Q Consensus 446 v~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~--------------~~~~~~l~P~~~~ 511 (559)
|+++|||+||+|+|||||+|+++++|++|||+|+++||++||++++++ ++...+|+|+.++
T Consensus 308 -----rs~~pnQ~NN~~~FPgi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~~~~~~~~~~~~~~~~~~~~~iip~~~~ 382 (752)
T PRK07232 308 -----RSDYPNQVNNVLCFPYIFRGALDVGATTINEEMKLAAVRAIAELAREEVSDEVAAAYGGQKLSFGPEYIIPKPFD 382 (752)
T ss_pred -----CcCCCCcccceeecchhhHHHHHcCCccCCHHHHHHHHHHHHhhcccccchhhhhhhccccccCCCCccCCCCCC
Confidence 899999999999999999999999999999999999999999999886 6888999999888
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHH
Q 008629 512 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAE 547 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~ 547 (559)
++|+..||.||+++|+++|+|+... +|+.+|.+
T Consensus 383 -~~~~~~va~av~~~a~~~g~a~~~~--~~~~~~~~ 415 (752)
T PRK07232 383 -PRLIVKIAPAVAKAAMDSGVATRPI--ADMDAYRE 415 (752)
T ss_pred -hhHHHHHHHHHHHHHHhhCcccCCC--CCHHHHHH
Confidence 6799999999999999999998532 24444443
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-100 Score=770.03 Aligned_cols=277 Identities=60% Similarity=0.974 Sum_probs=270.2
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ +|+|+|||+++||++|++|||+++|.+ |
T Consensus 1 IqGTa~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~-~G~~~eeA~~~i~~vD~~Gll~~~r~~-l 78 (279)
T cd05312 1 IQGTAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVR-EGLSEEEARKKIWLVDSKGLLTKDRKD-L 78 (279)
T ss_pred CchHHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHH-cCCChhhccCeEEEEcCCCeEeCCCCc-c
Confidence 89999999999999999999999999999999999999999999999998 599999999999999999999999965 9
Q ss_pred chhchhhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 008629 355 QHFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 432 (559)
Q Consensus 355 ~~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~ 432 (559)
+++|++||++.+ +..+|+|+|+++|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||+
T Consensus 79 ~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~~E~~pe~a~~~t~ 158 (279)
T cd05312 79 TPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSGVGGAFTEEVVRAMAKSNERPIIFALSNPTSKAECTAEDAYKWTD 158 (279)
T ss_pred hHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCCcCCccccCHHHHHHhhc
Confidence 999999999766 568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCc
Q 008629 433 GRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 512 (559)
Q Consensus 433 G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~i 512 (559)
|+|||||||||+||+||||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..+.|||+++++
T Consensus 159 G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~~~~~~l~~~~l~P~~~~~ 238 (279)
T cd05312 159 GRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASLVTDEELARGRLYPPLSNI 238 (279)
T ss_pred CCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHhCCccccCCCeeeCCCccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCccc
Q 008629 513 RKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTP 553 (559)
Q Consensus 513 r~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P 553 (559)
|+||..||.+|+++|+++|+|+..++|+|+++||+++||+|
T Consensus 239 r~vs~~VA~aVa~~A~~~gla~~~~~~~~~~~~i~~~~w~P 279 (279)
T cd05312 239 REISAQIAVAVAKYAYEEGLATRYPPPEDLEEYVKSQMWEP 279 (279)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHHhCccCC
Confidence 99999999999999999999987677789999999999998
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-96 Score=737.17 Aligned_cols=252 Identities=54% Similarity=0.898 Sum_probs=229.7
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|+++ |+|++|||+||||+|++|||+++|. +|
T Consensus 1 iqGTaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~-G~~~~eA~~~i~lvD~~Gll~~~r~-~l 78 (255)
T PF03949_consen 1 IQGTAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVRE-GLSEEEARKRIWLVDSKGLLTDDRE-DL 78 (255)
T ss_dssp CHHHHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCT-TS-HHHHHTTEEEEETTEEEBTTTS-SH
T ss_pred CchhHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHh-cCCHHHHhccEEEEeccceEeccCc-cC
Confidence 799999999999999999999999999999999999999999999999985 9999999999999999999999994 59
Q ss_pred chhchhhccccCCC---CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 355 QHFKKPWAHEHEPV---NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 355 ~~~k~~fA~~~~~~---~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
+++|++|||+..+. .+|+|+|+++|||||||+|+++|+||||+||+|+++|||||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~a~~~~~~~~~~~L~eav~~~kPtvLIG~S~~~g~ft~evv~~Ma~~~erPIIF~LSNPt~~aE~~peda~~~t 158 (255)
T PF03949_consen 79 NPHKKPFARKTNPEKDWGSLLEAVKGAKPTVLIGLSGQGGAFTEEVVRAMAKHNERPIIFPLSNPTPKAECTPEDAYEWT 158 (255)
T ss_dssp SHHHHHHHBSSSTTT--SSHHHHHHCH--SEEEECSSSTTSS-HHHHHHCHHHSSSEEEEE-SSSCGGSSS-HHHHHHTT
T ss_pred ChhhhhhhccCcccccccCHHHHHHhcCCCEEEEecCCCCcCCHHHHHHHhccCCCCEEEECCCCCCcccCCHHHHHhhC
Confidence 99999999987665 499999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
+|+|||||||||+||+|+||+++||||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~g~ai~AtGSpf~pv~~~Gr~~~p~Q~NN~~iFPGiglG~l~~~a~~Itd~M~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 238 (255)
T PF03949_consen 159 DGRAIFATGSPFPPVEYNGRSDYPNQCNNSYIFPGIGLGALDSRARRITDEMFLAAAEALADLVSEEELAPGRLYPPLFD 238 (255)
T ss_dssp TSEEEEEESS----EEETSCEESSCE-SGGGTHHHHHHHHHHCTBSS--HHHHHHHHHHHHHTSSHHHHHTTBSS-SGGG
T ss_pred CceEEEecCCccCCeeeCCeEEecCCCCeeEeeccceeeeeecCCeecCHHHHHHHHHHHHHhCCcccCCCCcccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHH
Q 008629 512 IRKISANIAANVAAKAY 528 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~ 528 (559)
+|+||.+||.+|+++||
T Consensus 239 ir~vs~~VA~aVa~~Ai 255 (255)
T PF03949_consen 239 IREVSARVAAAVAKQAI 255 (255)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhC
Confidence 99999999999999996
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B .... |
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-93 Score=715.00 Aligned_cols=251 Identities=51% Similarity=0.775 Sum_probs=245.2
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++|++ +|+|+||||++||++|++|||+++|.+ |
T Consensus 1 iqGTaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~-~Gls~e~A~~~i~~vD~~Gll~~~r~~-l 78 (254)
T cd00762 1 IQGTASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVK-EGISKEEACKRIWXVDRKGLLVKNRKE-T 78 (254)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHh-cCCCHHHHhccEEEECCCCeEeCCCCc-c
Confidence 79999999999999999999999999999999999999999999999997 599999999999999999999999965 8
Q ss_pred chhchh---hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 355 QHFKKP---WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 355 ~~~k~~---fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
.++|++ |+++..+..+|+|+|+++|||||||+|+++|+||+|+||+|+++|+|||||||||||+++||||||||+||
T Consensus 79 ~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt~~aE~tpe~a~~~t 158 (254)
T cd00762 79 CPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVSRVGGAFTPEVIRAXAEINERPVIFALSNPTSKAECTAEEAYTAT 158 (254)
T ss_pred CHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeCCCCCCCCHHHHHHHhhcCCCCEEEECCCcCCccccCHHHHHhhc
Confidence 999999 88887777899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
+|||||||||||+||+||||+|+|+||||+|||||||||+++++|++|||+||++||++||++++++++..+.|||++++
T Consensus 159 ~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 238 (254)
T cd00762 159 EGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSVTEESLKPGRLYPPLFD 238 (254)
T ss_pred CCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhCChhcCCCCceeCCcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 008629 512 IRKISANIAANVAAKA 527 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A 527 (559)
||+||.+||.+|+++|
T Consensus 239 ir~vs~~VA~aVa~~a 254 (254)
T cd00762 239 IQEVSLNIAVAVAKYA 254 (254)
T ss_pred hhhHHHHHHHHHHHhC
Confidence 9999999999999875
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PF00390 malic: Malic enzyme, N-terminal domain; InterPro: IPR012301 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-64 Score=478.11 Aligned_cols=150 Identities=67% Similarity=1.217 Sum_probs=139.8
Q ss_pred HhhhhhhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecc
Q 008629 116 EERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILG 195 (559)
Q Consensus 116 ~~~Ne~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILG 195 (559)
|++||+|||+++.+|++|+||||||||||+|||+||++|++|+|||+|++|+|+|+++|+|||.++|++|||||||||||
T Consensus 1 q~~n~~Lfy~~l~~~~~e~lpivYTPtVg~ac~~~s~~~~~~~Gly~s~~d~g~i~~~l~n~~~~~v~v~VVTDG~rILG 80 (182)
T PF00390_consen 1 QDRNETLFYRLLSSHLEEMLPIVYTPTVGEACQNYSHLFRRPRGLYLSISDRGHIEEILRNWPERDVRVIVVTDGERILG 80 (182)
T ss_dssp HTTEHHHHHHHHHHTHHHHHHHHSTTCHHHHHHHHHHHGGCHHSCCCEGGGETCHHHHHTTSS-SS--EEEEE-SSSBTT
T ss_pred CCccEEEEEeehhhChHhhCceecCchHHHHHHHHHHhhccccceEEecCChHHHHHHHHhhhccCceEEEEeCchhhcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccccchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCC
Q 008629 196 LGDLGCQGMGIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGE 243 (559)
Q Consensus 196 LGDlG~~GmgI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp 243 (559)
|||+|++|||||+||++|||+||||||.+ +|++|+||||+||+++|||
T Consensus 81 lGD~G~~Gm~I~~GKl~ly~~~gGI~P~~~lPv~LDvGTnn~~ll~Dp~Y~G~r~~R~~g~~y~~fvdefv~av~~~~gp 160 (182)
T PF00390_consen 81 LGDLGVNGMGIPIGKLALYTACGGIDPSRCLPVCLDVGTNNEELLNDPLYLGLRHPRVRGEEYDEFVDEFVEAVKRRFGP 160 (182)
T ss_dssp TBS-GGGGHHHHHHHHHHHHHHHS-EGGGEEEEEEESBBS-HHHHH-TT--S-SSB---THHHHHHHHHHHHHHHHHHGC
T ss_pred ccCcCcceEEeeehhhhhHHhhcCcCcccccCeEeecCcchhhhccCcchhccccCCCChhhhhhCHHHHHHHHHHHhCC
Confidence 99999999999999999999999999998 8999999999999999999
Q ss_pred CeeeeeccCCCCcHHHHHHHHc
Q 008629 244 KVLIQFEDFANHNAFELLAKYG 265 (559)
Q Consensus 244 ~~lIq~EDf~~~~Af~lL~ryr 265 (559)
+++||||||+++|||++|+|||
T Consensus 161 ~~~IqfEDf~~~nAf~iL~kYr 182 (182)
T PF00390_consen 161 NALIQFEDFSNPNAFRILDKYR 182 (182)
T ss_dssp TSEEEE-S--CCHHHHHHHHHT
T ss_pred CeEEEEecCCChhHHHHHHhcC
Confidence 9999999999999999999997
|
g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 2HAE_B 1VL6_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A .... |
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=456.43 Aligned_cols=223 Identities=38% Similarity=0.518 Sum_probs=207.7
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
+||||+|++||+++|++..|.+++|+||||+|||+||.|||++|.. .|++ +++||++|++||++.+|.++|
T Consensus 1 ~qgt~~v~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~-----~G~~----~~~i~ivdr~gl~~~~r~~~L 71 (226)
T cd05311 1 QHGTAIVTLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLA-----AGAK----PENIVVVDSKGVIYEGREDDL 71 (226)
T ss_pred CCchHHHHHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHH-----cCcC----cceEEEEeCCCccccccchhh
Confidence 7999999999999999999999999999999999999999999975 3886 679999999999999997669
Q ss_pred chhchhhcccc--CCC-CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 355 QHFKKPWAHEH--EPV-NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 355 ~~~k~~fA~~~--~~~-~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
.++|++|+++. .+. .+|.|+++. ||+|||+|+ +|.||+++++.|+ ++||||+||||+ +||++++|++|
T Consensus 72 ~~~~~~la~~~~~~~~~~~l~~~l~~--~dvlIgaT~-~G~~~~~~l~~m~---~~~ivf~lsnP~--~e~~~~~A~~~- 142 (226)
T cd05311 72 NPDKNEIAKETNPEKTGGTLKEALKG--ADVFIGVSR-PGVVKKEMIKKMA---KDPIVFALANPV--PEIWPEEAKEA- 142 (226)
T ss_pred hHHHHHHHHHhccCcccCCHHHHHhc--CCEEEeCCC-CCCCCHHHHHhhC---CCCEEEEeCCCC--CcCCHHHHHHc-
Confidence 99999999764 222 378899985 999999999 8899999999997 899999999999 89999999999
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
|..||+|| +++.|+||||+|||||||||++++++++|||+||++||++||++++++++..+.|||++++
T Consensus 143 -ga~i~a~G----------~~~~~~Q~nn~~~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~~~~~~~~~~~P~~~~ 211 (226)
T cd05311 143 -GADIVATG----------RSDFPNQVNNVLGFPGIFRGALDVRATKITEEMKLAAAEAIADLAEEEVLGEEYIIPTPFD 211 (226)
T ss_pred -CCcEEEeC----------CCCCccccceeeecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCCccccCCCcccCCCCc
Confidence 55599998 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHH
Q 008629 512 IRKISANIAANVAAKA 527 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A 527 (559)
|+||..||.+|+++|
T Consensus 212 -~~~~~~va~~v~~~a 226 (226)
T cd05311 212 -PRVVPRVATAVAKAA 226 (226)
T ss_pred -hhHHHHHHHHHHHhC
Confidence 999999999999875
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.4e-08 Score=83.75 Aligned_cols=86 Identities=37% Similarity=0.492 Sum_probs=75.7
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
+||.++++++..+.+..+.+++..+++|+|+|.+|.+++..+.+. | .++++++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~-----~------~~~v~v~~r-------------- 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADE-----G------GKKVVLCDR-------------- 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHc-----C------CCEEEEEcC--------------
Confidence 689999999999999999999999999999999999999998763 3 257999888
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
|+||++++.++.|+++ .|+..++.|+||.++
T Consensus 56 ------------------------di~i~~~~~~~~~~~~---~~~~~~~~~~v~~~a 86 (86)
T cd05191 56 ------------------------DILVTATPAGVPVLEE---ATAKINEGAVVIDLA 86 (86)
T ss_pred ------------------------CEEEEcCCCCCCchHH---HHHhcCCCCEEEecC
Confidence 9999999999988888 455556999999875
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.012 Score=64.44 Aligned_cols=120 Identities=20% Similarity=0.274 Sum_probs=83.9
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|| |...||+--++-|+.. .++..+.+.+++|+|+|..|.++|..+... |. +
T Consensus 173 ~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~r---at~~~l~Gk~VlViG~G~IG~~vA~~lr~~-----Ga-------~ 237 (425)
T PRK05476 173 KFPAINVNDSVTKSKFDNRYGTGESLLDGIKR---ATNVLIAGKVVVVAGYGDVGKGCAQRLRGL-----GA-------R 237 (425)
T ss_pred CCCEEecCCcccCccccccHHHHhhhHHHHHH---hccCCCCCCEEEEECCCHHHHHHHHHHHhC-----CC-------E
Confidence 699998 6778888777666653 447778999999999999999999888652 63 5
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
++++|.+ ..|. +...+ ..-...++.++++. .|++|-+++..++|+.+.++.|. +.-|++-.+.+
T Consensus 238 ViV~d~d----p~ra--~~A~~-----~G~~v~~l~eal~~--aDVVI~aTG~~~vI~~~~~~~mK---~GailiNvG~~ 301 (425)
T PRK05476 238 VIVTEVD----PICA--LQAAM-----DGFRVMTMEEAAEL--GDIFVTATGNKDVITAEHMEAMK---DGAILANIGHF 301 (425)
T ss_pred EEEEcCC----chhh--HHHHh-----cCCEecCHHHHHhC--CCEEEECCCCHHHHHHHHHhcCC---CCCEEEEcCCC
Confidence 8888864 1121 11111 11112368888874 89999988877788888888886 34466555554
Q ss_pred C
Q 008629 417 T 417 (559)
Q Consensus 417 t 417 (559)
.
T Consensus 302 d 302 (425)
T PRK05476 302 D 302 (425)
T ss_pred C
Confidence 4
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0014 Score=71.01 Aligned_cols=121 Identities=25% Similarity=0.369 Sum_probs=82.0
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.+.-+|..+++--|.+..| .+.+.+++|+|+|..|..++..+.. .|+ .+++++|+.. +| ..
T Consensus 158 ~~~vSv~~~Av~la~~~~~-~l~~~~VlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~rs~----~r---a~ 218 (417)
T TIGR01035 158 AGAVSISSAAVELAERIFG-SLKGKKALLIGAGEMGELVAKHLLR-----KGV------GKILIANRTY----ER---AE 218 (417)
T ss_pred CCCcCHHHHHHHHHHHHhC-CccCCEEEEECChHHHHHHHHHHHH-----CCC------CEEEEEeCCH----HH---HH
Confidence 5666777777766666655 4888999999999999999888864 364 5788887741 11 11
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCc-EEEecCCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKP-LILALSNPT 417 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erP-IIFaLSNPt 417 (559)
...+.+-...-...++.+++.. .|++|-+++.+ ..++++.++.+.....+| +|+-+++|.
T Consensus 219 ~la~~~g~~~i~~~~l~~~l~~--aDvVi~aT~s~~~ii~~e~l~~~~~~~~~~~~viDla~Pr 280 (417)
T TIGR01035 219 DLAKELGGEAVKFEDLEEYLAE--ADIVISSTGAPHPIVSKEDVERALRERTRPLFIIDIAVPR 280 (417)
T ss_pred HHHHHcCCeEeeHHHHHHHHhh--CCEEEECCCCCCceEcHHHHHHHHhcCCCCeEEEEeCCCC
Confidence 1111111111112367788875 89999987544 578999999875433356 888999997
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.013 Score=64.53 Aligned_cols=185 Identities=17% Similarity=0.156 Sum_probs=126.0
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcCC---C-------Cee----ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-------LVF----NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~~---~-------~~F----nDDiQGTaaV~LAgll~ 288 (559)
|-..|...|+.++.+.+||..=|-=+|++..-.- -+.+.|+.- . |+- .+--..||-=+..++..
T Consensus 142 Eler~~r~~~~~l~~~iG~~~DipapDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~ 221 (445)
T PRK09414 142 EIMRFCQSFMTELYRHIGPDTDVPAGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEE 221 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHH
Confidence 6677889999999999999888888888743222 166787632 1 111 12334677777888888
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE-cccCccccCCcCCCchh-----ch---
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHF-----KK--- 359 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLi~~~R~~~l~~~-----k~--- 359 (559)
+++..|.+|++.||+|.|-|..|...|++|.+ .|. +++-+ |++|-|+... .|+.. |.
T Consensus 222 ~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~-----~Ga-------kVVavsDs~G~iyn~~--GLD~~~L~~~k~~~~ 287 (445)
T PRK09414 222 MLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQ-----LGA-------KVVTCSDSSGYVYDEE--GIDLEKLKEIKEVRR 287 (445)
T ss_pred HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEEcCCceEECCC--CCCHHHHHHHHHhcC
Confidence 88988999999999999999999999999964 364 45544 9999999875 34322 21
Q ss_pred ----hhccc-cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 360 ----PWAHE-HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 360 ----~fA~~-~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
.|... ....-+-. .+-.++.||||=+.. ++..|++-...+-. +.-.||.=-+| |+ -+| +++++.
T Consensus 288 ~~l~~~~~~~~~~~i~~~-~i~~~d~DVliPaAl-~n~It~~~a~~i~~-~~akiIvEgAN~p~-t~~--A~~~L~ 357 (445)
T PRK09414 288 GRISEYAEEFGAEYLEGG-SPWSVPCDIALPCAT-QNELDEEDAKTLIA-NGVKAVAEGANMPS-TPE--AIEVFL 357 (445)
T ss_pred CchhhhhhhcCCeecCCc-cccccCCcEEEecCC-cCcCCHHHHHHHHH-cCCeEEEcCCCCCC-CHH--HHHHHH
Confidence 12110 00011222 234567999997665 77999999998843 35679999998 76 244 445554
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.028 Score=62.01 Aligned_cols=122 Identities=19% Similarity=0.157 Sum_probs=92.3
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcCC---C-Cee----------ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGTT---H-LVF----------NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~~---~-~~F----------nDDiQGTaaV~LAgll~ 288 (559)
|-..+.-.||..+.+.+||+.-|--+|++..-.- -+.+.|+.. . -+| .+--.-||-=+.-++-.
T Consensus 138 Eler~~r~f~~~L~~~iGp~~dipApDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~ 217 (444)
T PRK14031 138 EVMRFCQAFMLELWRHIGPETDVPAGDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLME 217 (444)
T ss_pred HHHHHHHHHHHHHHhccCCCCccCccccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHH
Confidence 6777889999999999999998888888763322 267777531 1 233 23335677777888888
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 359 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~ 359 (559)
+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|+... .|+..+.
T Consensus 218 ~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~-----GA------kVVaVSD~~G~iy~~~--Gld~~~l 275 (444)
T PRK14031 218 MLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLEL-----GG------KVVTMSDSDGYIYDPD--GIDREKL 275 (444)
T ss_pred HHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCC--CCCHHHH
Confidence 899999999999999999999999999999763 64 3455699999988754 4655443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0035 Score=65.25 Aligned_cols=177 Identities=20% Similarity=0.299 Sum_probs=103.4
Q ss_pred HHHHHhHhcCCCCCc-----chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHH
Q 008629 210 KLALYTALGGIRPSA-----EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLA 284 (559)
Q Consensus 210 Kl~LY~a~gGI~P~~-----~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LA 284 (559)
=-.||..++|+|-.- ..-+.=+.|-.|.+..+ -...++ .=-.+|+++=++.|.+.-+. .|-.+|+.+
T Consensus 93 ~~HLf~Va~GLdS~v~GE~qIlgQvk~A~~~a~~~g~-~~~~L~---~lf~~a~~~~k~vr~et~i~----~~~~sv~~~ 164 (311)
T cd05213 93 VRHLFRVASGLDSMVVGETQILGQVKNAYKLAKEAGT-SGKLLN---RLFQKAIKVGKRVRTETGIS----RGAVSISSA 164 (311)
T ss_pred HHHHHHHHhhhhhhhcCChHHHHHHHHHHHHHHHcCC-chHHHH---HHHHHHHHHHHHHhhhcCCC----CCCcCHHHH
Confidence 358888999988765 11121222222222211 000010 01147777777777654444 344566666
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 364 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~ 364 (559)
++-.|....|. +.+.+|+|+|+|..|..++..+.. .|. ++|+++|+. .+| .......|-..
T Consensus 165 Av~~a~~~~~~-l~~~~V~ViGaG~iG~~~a~~L~~-----~g~------~~V~v~~r~----~~r---a~~la~~~g~~ 225 (311)
T cd05213 165 AVELAEKIFGN-LKGKKVLVIGAGEMGELAAKHLAA-----KGV------AEITIANRT----YER---AEELAKELGGN 225 (311)
T ss_pred HHHHHHHHhCC-ccCCEEEEECcHHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHcCCe
Confidence 66666555554 889999999999999988888865 243 679988874 222 11122222111
Q ss_pred cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 008629 365 HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPT 417 (559)
Q Consensus 365 ~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt 417 (559)
.....++.++++. .|++|-+++.+.. +++++.+.+.. ..-+|+=||||-
T Consensus 226 ~~~~~~~~~~l~~--aDvVi~at~~~~~--~~~~~~~~~~~~~~~~~viDlavPr 276 (311)
T cd05213 226 AVPLDELLELLNE--ADVVISATGAPHY--AKIVERAMKKRSGKPRLIVDLAVPR 276 (311)
T ss_pred EEeHHHHHHHHhc--CCEEEECCCCCch--HHHHHHHHhhCCCCCeEEEEeCCCC
Confidence 1112357787775 8999999887753 66666654322 234777899986
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.016 Score=63.16 Aligned_cols=182 Identities=22% Similarity=0.250 Sum_probs=123.6
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcC----CCCee----------ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT----THLVF----------NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~----~~~~F----------nDDiQGTaaV~LAgll~ 288 (559)
+-..+...|+.++.+.-||..=|-=+|++..-.- -+.++|+. .-.|+ .+--.-||-=+..++-.
T Consensus 116 e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~ 195 (410)
T PLN02477 116 ELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYSKFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEA 195 (410)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHHHhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHH
Confidence 5677889999999998888655556777653221 15677753 11111 22334577777888888
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEE-EEcccCccccCCcCCCchhch-hhcccc-
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWAHEH- 365 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLi~~~R~~~l~~~k~-~fA~~~- 365 (559)
+++..|.+|+..||+|.|-|..|-+.|++|.+ .|. +|. +.|++|-|+... .|+.... .+.+..
T Consensus 196 ~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e-----~Ga-------kVVaVsD~~G~iy~~~--GLD~~~L~~~k~~~g 261 (410)
T PLN02477 196 LLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHE-----KGG-------KIVAVSDITGAVKNEN--GLDIPALRKHVAEGG 261 (410)
T ss_pred HHHHcCCCccCCEEEEECCCHHHHHHHHHHHH-----cCC-------EEEEEECCCCeEECCC--CCCHHHHHHHHHhcC
Confidence 89989999999999999999999999998865 363 455 899999999875 3442211 111110
Q ss_pred -----C--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 366 -----E--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 366 -----~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
+ ..-+-.+.+. .+.||||=+. .++.+|++.+..+ .-.||.--+| |+ -+| +++.+.
T Consensus 262 ~l~~~~~a~~i~~~e~l~-~~~DvliP~A-l~~~I~~~na~~i----~ak~I~egAN~p~-t~e--a~~~L~ 324 (410)
T PLN02477 262 GLKGFPGGDPIDPDDILV-EPCDVLIPAA-LGGVINKENAADV----KAKFIVEAANHPT-DPE--ADEILR 324 (410)
T ss_pred chhccccceEecCcccee-ccccEEeecc-ccccCCHhHHHHc----CCcEEEeCCCCCC-CHH--HHHHHH
Confidence 0 0012234343 4899999665 4779999999986 6889999999 66 344 445554
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=58.99 Aligned_cols=130 Identities=21% Similarity=0.236 Sum_probs=91.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
||-=+..++-.+++..+.+|+..||+|.|-|..|.++|++|.+. |. +-+.+.|++|-++.. + |+..
T Consensus 2 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~-----G~------~vV~vsD~~g~i~~~-G--ld~~ 67 (217)
T cd05211 2 TGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEE-----GG------KVLAVSDPDGYIYDP-G--ITTE 67 (217)
T ss_pred chhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEEcCCCcEECC-C--CCHH
Confidence 44446667778889999999999999999999999999999763 54 678899999988876 4 3322
Q ss_pred -chhhccccCCCCC-------HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHh
Q 008629 358 -KKPWAHEHEPVNN-------LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAY 428 (559)
Q Consensus 358 -k~~fA~~~~~~~~-------L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~ 428 (559)
...++++...... =.+.+-.++.||||=++. ++..|++..+.+ .-++|.--+| |++. .+++.+
T Consensus 68 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~-~~~i~~~~a~~l----~a~~V~e~AN~p~t~---~a~~~L 139 (217)
T cd05211 68 ELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCAL-GNVIDLENAKKL----KAKVVAEGANNPTTD---EALRIL 139 (217)
T ss_pred HHHHHHHhhCCccccCcccccCcccceeccccEEeeccc-cCccChhhHhhc----CccEEEeCCCCCCCH---HHHHHH
Confidence 1222221110000 013344568899997776 569999999988 4789998888 8742 456666
Q ss_pred c
Q 008629 429 T 429 (559)
Q Consensus 429 ~ 429 (559)
.
T Consensus 140 ~ 140 (217)
T cd05211 140 H 140 (217)
T ss_pred H
Confidence 4
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0054 Score=66.54 Aligned_cols=120 Identities=27% Similarity=0.423 Sum_probs=78.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
+..+|+.+++--|.+..| ++.+.+++|+|+|..|..++..+.. .|. ++|+++|+. ..| ...
T Consensus 161 ~~~Sv~~~Av~~a~~~~~-~~~~~~vlViGaG~iG~~~a~~L~~-----~G~------~~V~v~~r~----~~r---a~~ 221 (423)
T PRK00045 161 GAVSVASAAVELAKQIFG-DLSGKKVLVIGAGEMGELVAKHLAE-----KGV------RKITVANRT----LER---AEE 221 (423)
T ss_pred CCcCHHHHHHHHHHHhhC-CccCCEEEEECchHHHHHHHHHHHH-----CCC------CeEEEEeCC----HHH---HHH
Confidence 355666666554444444 6888999999999999999888764 364 578888774 122 111
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC--CCcEEEecCCCC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN--EKPLILALSNPT 417 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~--erPIIFaLSNPt 417 (559)
..+.|..+..+..++.+++. +.|++|-+++.+ ..++++.++.+.+.. ...+|+=||+|-
T Consensus 222 la~~~g~~~~~~~~~~~~l~--~aDvVI~aT~s~~~~i~~~~l~~~~~~~~~~~~vviDla~Pr 283 (423)
T PRK00045 222 LAEEFGGEAIPLDELPEALA--EADIVISSTGAPHPIIGKGMVERALKARRHRPLLLVDLAVPR 283 (423)
T ss_pred HHHHcCCcEeeHHHHHHHhc--cCCEEEECCCCCCcEEcHHHHHHHHhhccCCCeEEEEeCCCC
Confidence 22222111111235667776 489999988755 478999999875322 335888899997
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0079 Score=65.64 Aligned_cols=129 Identities=18% Similarity=0.236 Sum_probs=93.0
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|+|..|.++|..+.. .|. +
T Consensus 163 ~~Pv~~vnds~~K~~~dn~~g~g~s~~~~i~---r~t~~~l~GktVvViG~G~IG~~va~~ak~-----~Ga-------~ 227 (413)
T cd00401 163 KFPAINVNDSVTKSKFDNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQSLRG-----QGA-------R 227 (413)
T ss_pred CCCEEEecchhhcccccccchhchhhHHHHH---HhcCCCCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 677774 667899998887776 467788999999999999999999988764 363 4
Q ss_pred EEEEcccCccccCCcCCCchhchhhcccc-CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
++++|.+ ..| ..+|+.. -...++.++++. .|++|-+++..++|+++.++.|. ..-+|.-.+.
T Consensus 228 ViV~d~d----~~R--------~~~A~~~G~~~~~~~e~v~~--aDVVI~atG~~~~i~~~~l~~mk---~GgilvnvG~ 290 (413)
T cd00401 228 VIVTEVD----PIC--------ALQAAMEGYEVMTMEEAVKE--GDIFVTTTGNKDIITGEHFEQMK---DGAIVCNIGH 290 (413)
T ss_pred EEEEECC----hhh--------HHHHHhcCCEEccHHHHHcC--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEeCC
Confidence 7777753 222 2233221 111246788864 79999999888888888888886 5557766777
Q ss_pred CCCCCCCCHHHHhc
Q 008629 416 PTSQSECTAEEAYT 429 (559)
Q Consensus 416 Pt~~~EctpedA~~ 429 (559)
+. .|+.+.+...
T Consensus 291 ~~--~eId~~~L~~ 302 (413)
T cd00401 291 FD--VEIDVKGLKE 302 (413)
T ss_pred CC--CccCHHHHHh
Confidence 64 7888887654
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.023 Score=63.07 Aligned_cols=131 Identities=17% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|| |...||+--++-|++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 215 ~~Pvi~vnds~~K~~fDn~yGtgqS~~d~i~---r~t~i~LaGKtVvViGyG~IGr~vA~~aka-----~Ga-------~ 279 (477)
T PLN02494 215 LFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVICGYGDVGKGCAAAMKA-----AGA-------R 279 (477)
T ss_pred CCCEEEEcChhhhhhhhccccccccHHHHHH---HhcCCccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------E
Confidence 688886 557899888888777 567888999999999999999999999853 264 4
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
++++|.+.. |. +.....-| ...++.|+++. .|++|=+++..++++++.++.|. +.-++.-.+.+
T Consensus 280 VIV~e~dp~----r~--~eA~~~G~-----~vv~leEal~~--ADVVI~tTGt~~vI~~e~L~~MK---~GAiLiNvGr~ 343 (477)
T PLN02494 280 VIVTEIDPI----CA--LQALMEGY-----QVLTLEDVVSE--ADIFVTTTGNKDIIMVDHMRKMK---NNAIVCNIGHF 343 (477)
T ss_pred EEEEeCCch----hh--HHHHhcCC-----eeccHHHHHhh--CCEEEECCCCccchHHHHHhcCC---CCCEEEEcCCC
Confidence 777776421 10 11111111 11258888875 89999877777788999999986 66788888887
Q ss_pred CCCCCCCHHHHhcc
Q 008629 417 TSQSECTAEEAYTW 430 (559)
Q Consensus 417 t~~~EctpedA~~w 430 (559)
. .|+.-++..++
T Consensus 344 ~--~eID~~aL~~~ 355 (477)
T PLN02494 344 D--NEIDMLGLETY 355 (477)
T ss_pred C--CccCHHHHhhc
Confidence 6 77877766654
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.014 Score=60.42 Aligned_cols=138 Identities=19% Similarity=0.255 Sum_probs=91.1
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
..+-+++=.++.-+++..+..|.+.+++|+|+|..|..+|+.+... |. +++++|++. . .+.
T Consensus 128 ~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~-----G~-------~V~v~~R~~----~---~~~ 188 (287)
T TIGR02853 128 YNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSAL-----GA-------RVFVGARSS----A---DLA 188 (287)
T ss_pred EccHhHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHC-----CC-------EEEEEeCCH----H---HHH
Confidence 4555666667777788888999999999999999999999999652 53 588887741 1 111
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcE
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 435 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~a 435 (559)
..+ .+....-...+|.+.++. .|++|=+. ..+.++++.++.|. +.-+|+=+|..- -++.++.|-+ -.-++
T Consensus 189 ~~~-~~g~~~~~~~~l~~~l~~--aDiVint~-P~~ii~~~~l~~~k---~~aliIDlas~P--g~tdf~~Ak~-~G~~a 258 (287)
T TIGR02853 189 RIT-EMGLIPFPLNKLEEKVAE--IDIVINTI-PALVLTADVLSKLP---KHAVIIDLASKP--GGTDFEYAKK-RGIKA 258 (287)
T ss_pred HHH-HCCCeeecHHHHHHHhcc--CCEEEECC-ChHHhCHHHHhcCC---CCeEEEEeCcCC--CCCCHHHHHH-CCCEE
Confidence 111 000011112357777774 89999654 34578999998885 466888776522 4556655544 34477
Q ss_pred EEeeCCC
Q 008629 436 IFASGSP 442 (559)
Q Consensus 436 ifAsGSP 442 (559)
+.+-|-|
T Consensus 259 ~~~~glP 265 (287)
T TIGR02853 259 LLAPGLP 265 (287)
T ss_pred EEeCCCC
Confidence 8888865
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.015 Score=62.04 Aligned_cols=113 Identities=21% Similarity=0.341 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
|+++...++--|.+..|..|++.+++|.|| |+.|--++++|... .|. ++++++++. ..| +..
T Consensus 134 T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~----~gv------~~lilv~R~----~~r---l~~ 196 (340)
T PRK14982 134 TAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAK----TGV------AELLLVARQ----QER---LQE 196 (340)
T ss_pred HHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhh----CCC------CEEEEEcCC----HHH---HHH
Confidence 677888888888999999999999999999 89999999988642 243 578888764 112 333
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC--CCHHHHHHHHcCCCCc-EEEecCCCCC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT--FTKEVIEAMASFNEKP-LILALSNPTS 418 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~--Ft~evv~~Ma~~~erP-IIFaLSNPt~ 418 (559)
.+.++.. ....+|.+++.. +|+++=+++.+.. ++++.+ ++| +|+=++.|-.
T Consensus 197 La~el~~--~~i~~l~~~l~~--aDiVv~~ts~~~~~~I~~~~l-------~~~~~viDiAvPRD 250 (340)
T PRK14982 197 LQAELGG--GKILSLEEALPE--ADIVVWVASMPKGVEIDPETL-------KKPCLMIDGGYPKN 250 (340)
T ss_pred HHHHhcc--ccHHhHHHHHcc--CCEEEECCcCCcCCcCCHHHh-------CCCeEEEEecCCCC
Confidence 3333321 122468888875 9999988776432 677655 344 5556899864
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.015 Score=56.05 Aligned_cols=92 Identities=22% Similarity=0.339 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh
Q 008629 282 VLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 360 (559)
Q Consensus 282 ~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~ 360 (559)
+..+.+-.++-...+|++.+++++|+|. .|..+|+.|.. .|. ++++++++
T Consensus 27 ~~~a~v~l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~-----~g~-------~V~v~~r~----------------- 77 (168)
T cd01080 27 TPAGILELLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLN-----RNA-------TVTVCHSK----------------- 77 (168)
T ss_pred hHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhh-----CCC-------EEEEEECC-----------------
Confidence 3334444555556789999999999997 59888888865 252 58888763
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 361 WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 361 fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
..+|.+.++. .|++|.+++.+..|+++.++ +.-+|+=++.|-
T Consensus 78 -------~~~l~~~l~~--aDiVIsat~~~~ii~~~~~~------~~~viIDla~pr 119 (168)
T cd01080 78 -------TKNLKEHTKQ--ADIVIVAVGKPGLVKGDMVK------PGAVVIDVGINR 119 (168)
T ss_pred -------chhHHHHHhh--CCEEEEcCCCCceecHHHcc------CCeEEEEccCCC
Confidence 0357778886 99999999988899999764 346888888876
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0037 Score=57.42 Aligned_cols=102 Identities=25% Similarity=0.435 Sum_probs=66.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~L 371 (559)
.++++.|++++|||.+|-+++..|.. .|. ++|+++++. .+| .....+.|-.. ..+..++
T Consensus 8 ~~l~~~~vlviGaGg~ar~v~~~L~~-----~g~------~~i~i~nRt----~~r---a~~l~~~~~~~~~~~~~~~~~ 69 (135)
T PF01488_consen 8 GDLKGKRVLVIGAGGAARAVAAALAA-----LGA------KEITIVNRT----PER---AEALAEEFGGVNIEAIPLEDL 69 (135)
T ss_dssp STGTTSEEEEESSSHHHHHHHHHHHH-----TTS------SEEEEEESS----HHH---HHHHHHHHTGCSEEEEEGGGH
T ss_pred CCcCCCEEEEECCHHHHHHHHHHHHH-----cCC------CEEEEEECC----HHH---HHHHHHHcCccccceeeHHHH
Confidence 37999999999999999888887765 365 789999874 222 23333333110 1123456
Q ss_pred HHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
.+.+.. .|++|-+++.+ -.++++.++..... ..+||=||+|-.
T Consensus 70 ~~~~~~--~DivI~aT~~~~~~i~~~~~~~~~~~--~~~v~Dla~Pr~ 113 (135)
T PF01488_consen 70 EEALQE--ADIVINATPSGMPIITEEMLKKASKK--LRLVIDLAVPRD 113 (135)
T ss_dssp CHHHHT--ESEEEE-SSTTSTSSTHHHHTTTCHH--CSEEEES-SS-S
T ss_pred HHHHhh--CCeEEEecCCCCcccCHHHHHHHHhh--hhceeccccCCC
Confidence 666764 99999998776 37888888653211 249999999964
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.038 Score=60.27 Aligned_cols=128 Identities=20% Similarity=0.258 Sum_probs=87.7
Q ss_pred CCCeee----------cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVFN----------DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~Fn----------DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+|+ |...||+--++-+++ |.++..+...+++|+|.|..|.++|..+.. .|. +
T Consensus 156 ~~Pvi~vnds~~K~~fDn~yg~g~s~~~~i~---r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~-----~Ga-------~ 220 (406)
T TIGR00936 156 KFPAINVNDAYTKSLFDNRYGTGQSTIDGIL---RATNLLIAGKTVVVAGYGWCGKGIAMRARG-----MGA-------R 220 (406)
T ss_pred CCcEEEecchhhchhhhcccccchhHHHHHH---HhcCCCCCcCEEEEECCCHHHHHHHHHHhh-----CcC-------E
Confidence 678886 667899977766655 567778999999999999999999998764 253 5
Q ss_pred EEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
++++|.+- .|. +.... +.-...++.|+++. .|++|-+++..++++.+.+..|. +.-||.-.+..
T Consensus 221 ViV~d~dp----~r~--~~A~~-----~G~~v~~leeal~~--aDVVItaTG~~~vI~~~~~~~mK---~GailiN~G~~ 284 (406)
T TIGR00936 221 VIVTEVDP----IRA--LEAAM-----DGFRVMTMEEAAKI--GDIFITATGNKDVIRGEHFENMK---DGAIVANIGHF 284 (406)
T ss_pred EEEEeCCh----hhH--HHHHh-----cCCEeCCHHHHHhc--CCEEEECCCCHHHHHHHHHhcCC---CCcEEEEECCC
Confidence 88887641 111 11111 11112357888874 89999888777788888888775 55577766666
Q ss_pred CCCCCCCHHHH
Q 008629 417 TSQSECTAEEA 427 (559)
Q Consensus 417 t~~~EctpedA 427 (559)
. .|+.-++.
T Consensus 285 ~--~eId~~aL 293 (406)
T TIGR00936 285 D--VEIDVKAL 293 (406)
T ss_pred C--ceeCHHHH
Confidence 4 55555444
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.34 Score=53.76 Aligned_cols=176 Identities=17% Similarity=0.173 Sum_probs=121.9
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHH---HHHHHcC---CC-Ceeec----------CCcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---TH-LVFND----------DIQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~---lL~ryr~---~~-~~FnD----------DiQGTaaV~LAgll 287 (559)
|-..|...||..+.+..||+.=|-=.|++. +..+ +.+.|+. .. .|+-. --.-||-=+..++-
T Consensus 147 El~r~~r~f~~eL~~~IGp~~DvpA~DvGt-~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~ 225 (454)
T PTZ00079 147 EVMRFCQSFMTELYRHIGPDTDVPAGDIGV-GGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVL 225 (454)
T ss_pred HHHHHHHHHHHHHHHhcCCCCccchhhcCC-CHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHH
Confidence 567888999999999999999999999984 3333 5566652 11 22211 12237777778888
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEE-EEcccCccccCCcCCCchhch-------
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK------- 359 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLi~~~R~~~l~~~k~------- 359 (559)
.+++..|.+|++.|++|-|.|..|...|+.|.+. |. +++ +.|++|-|+... .|+..+.
T Consensus 226 ~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~-----Ga-------kVVavSD~~G~iy~~~--Gld~~~l~~l~~~k 291 (454)
T PTZ00079 226 EVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQL-----GA-------KVLTMSDSDGYIHEPN--GFTKEKLAYLMDLK 291 (454)
T ss_pred HHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEEcCCCcEECCC--CCCHHHHHHHHHHH
Confidence 8999999999999999999999999999998763 63 455 999999999875 3544332
Q ss_pred --------hhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 360 --------PWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 360 --------~fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
.|+...... -+-.+ +-.++.|||+=+.. .+..|++-.+.+-+. .-.+|.=-+| |++
T Consensus 292 ~~~~g~i~~~~~~~~~a~~~~~~~-~~~~~cDI~iPcA~-~n~I~~~~a~~l~~~-~ak~V~EgAN~p~t 358 (454)
T PTZ00079 292 NVKRGRLKEYAKHSSTAKYVPGKK-PWEVPCDIAFPCAT-QNEINLEDAKLLIKN-GCKLVAEGANMPTT 358 (454)
T ss_pred hhcCCcHHhhhhccCCcEEeCCcC-cccCCccEEEeccc-cccCCHHHHHHHHHc-CCeEEEecCCCCCC
Confidence 221100000 01111 22367899997776 569999999988433 4568888888 663
|
|
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.021 Score=64.04 Aligned_cols=218 Identities=18% Similarity=0.261 Sum_probs=121.3
Q ss_pred cHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhc
Q 008629 256 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334 (559)
Q Consensus 256 ~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~-~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~ 334 (559)
.||..=+|-|.+.-+ -.|--+|+-+++=-|.+.-|. +|.+.+|+|+|||..|..++..+.. .|.
T Consensus 226 ~Ai~~~KrVRteT~I----~~~~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~-----~G~------ 290 (519)
T PLN00203 226 HAITAGKRVRTETNI----ASGAVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVS-----KGC------ 290 (519)
T ss_pred HHHHHHHHHhhccCC----CCCCcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHh-----CCC------
Confidence 455555555543211 123345555566556666664 6999999999999999888877753 364
Q ss_pred ccEEEEcccCccccCCcCCCchhchhhcc---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCC---CC
Q 008629 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFN---EK 407 (559)
Q Consensus 335 ~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~---er 407 (559)
++|+++++. .+| .......|-. ...+..++.+++.. .|++|.+++.+ .+|++++++.|-... .+
T Consensus 291 ~~V~V~nRs----~er---a~~La~~~~g~~i~~~~~~dl~~al~~--aDVVIsAT~s~~pvI~~e~l~~~~~~~~~~~~ 361 (519)
T PLN00203 291 TKMVVVNRS----EER---VAALREEFPDVEIIYKPLDEMLACAAE--ADVVFTSTSSETPLFLKEHVEALPPASDTVGG 361 (519)
T ss_pred CeEEEEeCC----HHH---HHHHHHHhCCCceEeecHhhHHHHHhc--CCEEEEccCCCCCeeCHHHHHHhhhcccccCC
Confidence 679988874 222 2222222210 01123467788875 89999886544 489999999984321 24
Q ss_pred c-EEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHH
Q 008629 408 P-LILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLA 486 (559)
Q Consensus 408 P-IIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~a 486 (559)
| +|+=||.|-.--.+-. ...|+++|===-|-.+......-..+-...
T Consensus 362 ~~~~IDLAvPRdIdp~v~--------------------------------~l~~v~lydiDdL~~i~~~n~~~R~~~~~~ 409 (519)
T PLN00203 362 KRLFVDISVPRNVGACVS--------------------------------ELESARVYNVDDLKEVVAANKEDRLRKAME 409 (519)
T ss_pred CeEEEEeCCCCCCccccc--------------------------------cCCCCeEEEeccHHHHHHHhHHHHHHHHHH
Confidence 4 5667999963111110 111222221111222222222111111111
Q ss_pred HHHHH-HhccC--ccccCCCcccCCCCCccchHHHHHHHHHHHHHHh
Q 008629 487 ASEAL-AKQVT--EENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 530 (559)
Q Consensus 487 AA~aL-A~~v~--~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~ 530 (559)
|+.+ .+.+. .+.+....+-|-+.++|+-...|..+=.+.+.+.
T Consensus 410 -Ae~II~ee~~~F~~w~~~~~~~p~I~~lr~~~~~i~~~Eler~~~k 455 (519)
T PLN00203 410 -AQTIIREESKNFEAWRDSLETVPTIKKLRSYAERIRAAELEKCLSK 455 (519)
T ss_pred -HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2222 11111 1134456789999999999999988888888764
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.12 Score=57.44 Aligned_cols=123 Identities=18% Similarity=0.176 Sum_probs=85.1
Q ss_pred CCCeeecCCcchhHHH-------HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEE
Q 008629 267 THLVFNDDIQGTASVV-------LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 339 (559)
Q Consensus 267 ~~~~FnDDiQGTaaV~-------LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~l 339 (559)
.+|++|-+--.|-.+. ++.+-+.+|.++..|...+++|+|.|..|.++|..+.. .|. ++++
T Consensus 215 ~iPV~nv~d~~tk~~aD~~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a-----~Ga-------~ViV 282 (476)
T PTZ00075 215 LFPAINVNDSVTKSKFDNIYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRG-----FGA-------RVVV 282 (476)
T ss_pred CceEEEeCCcchHHHHHHHHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 6899986654444432 44445557788899999999999999999999999864 263 4777
Q ss_pred EcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 340 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 340 vD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+|++- .+. +.... +.-...++.++++. .|++|-+.+..++|+++.++.|. +.-|+.-.+...
T Consensus 283 ~e~dp----~~a--~~A~~-----~G~~~~~leell~~--ADIVI~atGt~~iI~~e~~~~MK---pGAiLINvGr~d 344 (476)
T PTZ00075 283 TEIDP----ICA--LQAAM-----EGYQVVTLEDVVET--ADIFVTATGNKDIITLEHMRRMK---NNAIVGNIGHFD 344 (476)
T ss_pred EeCCc----hhH--HHHHh-----cCceeccHHHHHhc--CCEEEECCCcccccCHHHHhccC---CCcEEEEcCCCc
Confidence 76641 110 11111 11112468888875 99999988888899999999997 555766666653
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.068 Score=53.78 Aligned_cols=123 Identities=24% Similarity=0.294 Sum_probs=88.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.-||-=+..++-.+++..+.+|++.||+|.|-|..|-++|++|.+. |. +=+.+.|++|-++...+ |+
T Consensus 8 ~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~-----g~------~vv~v~D~~g~~~~~~G--ld 74 (227)
T cd01076 8 EATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEA-----GA------KVVAVSDSDGTIYNPDG--LD 74 (227)
T ss_pred ccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCeEECCCC--CC
Confidence 3566667778888888889999999999999999999999988763 54 44559999999988653 43
Q ss_pred hhch-hhccccC--------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 356 HFKK-PWAHEHE--------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 356 ~~k~-~fA~~~~--------~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
.... .+.+... ..-+-.+ +-..+.||||=++ .++..|++.+..+ .-++|.--+| |+
T Consensus 75 ~~~l~~~~~~~g~l~~~~~~~~~~~~~-i~~~~~Dvlip~a-~~~~i~~~~~~~l----~a~~I~egAN~~~ 140 (227)
T cd01076 75 VPALLAYKKEHGSVLGFPGAERITNEE-LLELDCDILIPAA-LENQITADNADRI----KAKIIVEAANGPT 140 (227)
T ss_pred HHHHHHHHHhcCCcccCCCceecCCcc-ceeecccEEEecC-ccCccCHHHHhhc----eeeEEEeCCCCCC
Confidence 2221 1111100 0012233 3345889999777 5779999999988 4889999999 55
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.058 Score=56.11 Aligned_cols=132 Identities=22% Similarity=0.295 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh
Q 008629 281 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 360 (559)
Q Consensus 281 V~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~ 360 (559)
++-+++..+++..+..+...|++|+|+|.+|..++..+.. .|. +++++|++- .+ +...+..
T Consensus 134 ~aegav~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~-----~Ga-------~V~v~~r~~----~~---~~~~~~~ 194 (296)
T PRK08306 134 TAEGAIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKA-----LGA-------NVTVGARKS----AH---LARITEM 194 (296)
T ss_pred HHHHHHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECCH----HH---HHHHHHc
Confidence 3334566677778889999999999999999999888864 252 688888861 11 1111000
Q ss_pred hccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC-cEEEee
Q 008629 361 WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG-RAIFAS 439 (559)
Q Consensus 361 fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G-~aifAs 439 (559)
-++ .-...+|.+.++. .|++|-++. ...++++.++.|. +..+|+=++... -.|..+.|.+ .| +++.++
T Consensus 195 G~~-~~~~~~l~~~l~~--aDiVI~t~p-~~~i~~~~l~~~~---~g~vIIDla~~p--ggtd~~~a~~--~Gv~~~~~~ 263 (296)
T PRK08306 195 GLS-PFHLSELAEEVGK--IDIIFNTIP-ALVLTKEVLSKMP---PEALIIDLASKP--GGTDFEYAEK--RGIKALLAP 263 (296)
T ss_pred CCe-eecHHHHHHHhCC--CCEEEECCC-hhhhhHHHHHcCC---CCcEEEEEccCC--CCcCeeehhh--CCeEEEEEC
Confidence 000 0112367788874 999998754 4578999998886 566777565433 2344443332 34 345556
Q ss_pred CCC
Q 008629 440 GSP 442 (559)
Q Consensus 440 GSP 442 (559)
|-|
T Consensus 264 ~lp 266 (296)
T PRK08306 264 GLP 266 (296)
T ss_pred CCC
Confidence 644
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.34 Score=53.64 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=126.0
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHH---HHHHHcC----CCCeeec---CC-------cchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT----THLVFND---DI-------QGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~---lL~ryr~----~~~~FnD---Di-------QGTaaV~LAgll 287 (559)
|-..+.-.||..+.+..||+.=|-=.|++. ++.. +++.|+. ...++.- +. ..||-=+.-++-
T Consensus 138 Eler~~r~f~~~L~~~iGp~~DIpApDvgt-~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~ 216 (445)
T PRK14030 138 EIMRFCQAFMLELWRHIGPDTDVPAGDIGV-GGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVH 216 (445)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccccccCC-CHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHH
Confidence 667788899999998889988777778874 3332 5677754 2223211 12 237877888888
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh-------
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP------- 360 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~------- 360 (559)
.+++..|.+|++.||+|-|-|..|...|+.|.+. |. +=+-+-|++|-|+... .|+..+..
T Consensus 217 ~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~-----Ga------kvVavSD~~G~i~d~~--Gld~~~l~~l~~~k~ 283 (445)
T PRK14030 217 QMLETKGIDIKGKTVAISGFGNVAWGAATKATEL-----GA------KVVTISGPDGYIYDPD--GISGEKIDYMLELRA 283 (445)
T ss_pred HHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CCCHHHHHHHHHHHH
Confidence 8999999999999999999999999999999653 64 5577889999998764 35443311
Q ss_pred --------hccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 361 --------WAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 361 --------fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
++...+.. -+-.+ +-.++.||||=+.. ++..|++.++.+.++ .-.||.=-+| |++ +| +++++.
T Consensus 284 ~~~~~~~~~~~~~~ga~~i~~~~-~~~~~cDVliPcAl-~n~I~~~na~~l~~~-~ak~V~EgAN~p~t-~e--A~~iL~ 357 (445)
T PRK14030 284 SGNDIVAPYAEKFPGSTFFAGKK-PWEQKVDIALPCAT-QNELNGEDADKLIKN-GVLCVAEVSNMGCT-AE--AIDKFI 357 (445)
T ss_pred hcCccHHHHHhcCCCCEEcCCcc-ceeccccEEeeccc-cccCCHHHHHHHHHc-CCeEEEeCCCCCCC-HH--HHHHHH
Confidence 11010010 01122 22457899996665 579999999998532 4678888888 543 33 445554
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.065 Score=55.74 Aligned_cols=108 Identities=19% Similarity=0.316 Sum_probs=80.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+.+-+|-.|++..++..+.+++..++|++|+|- +|-.+|.+|.. .| | .+.+++++
T Consensus 137 ~~~p~T~~gii~~L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~-----~g-----a--tVtv~~~~------------ 192 (283)
T PRK14192 137 AYGSATPAGIMRLLKAYNIELAGKHAVVVGRSAILGKPMAMMLLN-----AN-----A--TVTICHSR------------ 192 (283)
T ss_pred cccCCcHHHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHHHh-----CC-----C--EEEEEeCC------------
Confidence 447777899999999999999999999999997 99999998864 25 2 57777752
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCCC--C-CCCCHHHHh
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPTS--Q-SECTAEEAY 428 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~--~-~EctpedA~ 428 (559)
..+|.+.++ +.|++|-+++.++.|+.+.++ +.-+|+=. .||.. . -++.+|++.
T Consensus 193 ------------t~~L~~~~~--~aDIvI~AtG~~~~v~~~~lk------~gavViDvg~n~~~~~~~GDvd~~~~~ 249 (283)
T PRK14192 193 ------------TQNLPELVK--QADIIVGAVGKPELIKKDWIK------QGAVVVDAGFHPRDGGGVGDIELQGIE 249 (283)
T ss_pred ------------chhHHHHhc--cCCEEEEccCCCCcCCHHHcC------CCCEEEEEEEeecCCCCcccccHHHhh
Confidence 124666666 499999999989889988874 45566554 36631 1 145555554
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.05 Score=59.50 Aligned_cols=253 Identities=20% Similarity=0.294 Sum_probs=145.4
Q ss_pred HHHHhHhcCCCCCc--c---hhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHH
Q 008629 211 LALYTALGGIRPSA--E---YAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAG 285 (559)
Q Consensus 211 l~LY~a~gGI~P~~--~---y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAg 285 (559)
-.||..++|+|--- | --+.=+.|-.|.+..+ -..++ ++=-..||..=+|+|.+--+ -.|--+|.-|+
T Consensus 94 ~HLfrVAsGLDSmVlGE~QILGQVK~Ay~~a~~~g~-~g~~L---~~lFqkAi~~gKrvRseT~I----~~~~VSi~saA 165 (414)
T COG0373 94 RHLFRVASGLDSLVLGETQILGQVKDAYAKAQENGT-LGKVL---NRLFQKAISVGKRVRSETGI----GKGAVSISSAA 165 (414)
T ss_pred HHHHHHhccchhhhcCcHHHHHHHHHHHHHHHHcCC-chHHH---HHHHHHHHHHHHHhhcccCC----CCCccchHHHH
Confidence 47899999988665 1 1111233333333322 11111 11124677777777753110 12333445555
Q ss_pred HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc
Q 008629 286 VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH 365 (559)
Q Consensus 286 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~ 365 (559)
+=-|-++.|. |++.+++|+|||..|-.+|.-|.. .|+ ++|+++.+. ..|. +.+|+.-
T Consensus 166 v~lA~~~~~~-L~~~~vlvIGAGem~~lva~~L~~-----~g~------~~i~IaNRT----~erA-------~~La~~~ 222 (414)
T COG0373 166 VELAKRIFGS-LKDKKVLVIGAGEMGELVAKHLAE-----KGV------KKITIANRT----LERA-------EELAKKL 222 (414)
T ss_pred HHHHHHHhcc-cccCeEEEEcccHHHHHHHHHHHh-----CCC------CEEEEEcCC----HHHH-------HHHHHHh
Confidence 5555555554 999999999999999999888876 365 788887662 2221 1233321
Q ss_pred ----CCCCCHHHHhcccCCcEEEecc-CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 008629 366 ----EPVNNLLDAVKVIKPTILIGSS-GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 366 ----~~~~~L~e~V~~vkPtvLIG~S-~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsG 440 (559)
-....|.+.+.. .||+|-.+ ++.-+++.+.++.-.+..++=+||=|+||-.- .+
T Consensus 223 ~~~~~~l~el~~~l~~--~DvVissTsa~~~ii~~~~ve~a~~~r~~~livDiavPRdi---------e~---------- 281 (414)
T COG0373 223 GAEAVALEELLEALAE--ADVVISSTSAPHPIITREMVERALKIRKRLLIVDIAVPRDV---------EP---------- 281 (414)
T ss_pred CCeeecHHHHHHhhhh--CCEEEEecCCCccccCHHHHHHHHhcccCeEEEEecCCCCC---------Cc----------
Confidence 122456677765 88888654 44468899988876544444499999999831 11
Q ss_pred CCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHH-----HhccCccccCCCcccCCCCCccch
Q 008629 441 SPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL-----AKQVTEENFEKGLIYPPFSNIRKI 515 (559)
Q Consensus 441 SPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aL-----A~~v~~~~~~~~~l~P~~~~ir~v 515 (559)
..+.-||+++|-==-|-.+.-.-..-..+.. ++|+++ +.+. +.+..-.+-|.+..+|+-
T Consensus 282 -------------~v~~l~~v~l~~iDDL~~iv~~n~~~R~~~~-~~ae~iIeee~~~~~--~~l~~~~~~~~i~~lr~~ 345 (414)
T COG0373 282 -------------EVGELPNVFLYTIDDLEEIVEENLEARKEEA-AKAEAIIEEELAEFM--EWLKKLEVVPTIRALREQ 345 (414)
T ss_pred -------------cccCcCCeEEEehhhHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHH--HHHHHhhchHHHHHHHHH
Confidence 1233456666654444444333222222222 222222 2221 134556788999999988
Q ss_pred HHHHHHHHHHHHHHhC
Q 008629 516 SANIAANVAAKAYELG 531 (559)
Q Consensus 516 s~~VA~aVa~~A~~~G 531 (559)
+..|...-.+.|.+.-
T Consensus 346 a~~v~~~ele~a~~~l 361 (414)
T COG0373 346 AEDVREEELEKALKKL 361 (414)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8888888888887543
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.23 Score=51.17 Aligned_cols=134 Identities=20% Similarity=0.143 Sum_probs=90.5
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-||-=+.-++-.+++..+.+|+..||+|-|-|..|.+.|++|.+ .|. +=+-+.|++|-|+... .|+.
T Consensus 16 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e-----~Ga------kvvaVsD~~G~i~~~~--Gld~ 82 (254)
T cd05313 16 ATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLE-----LGA------KVVTLSDSKGYVYDPD--GFTG 82 (254)
T ss_pred hhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEECCCceEECCC--CCCH
Confidence 45655677777888888999999999999999999999999976 364 3344999999998875 3432
Q ss_pred hch---------------hhccccC--CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 357 FKK---------------PWAHEHE--PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 357 ~k~---------------~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
.+. .|....+ ..-+-.|.. .++.||||=+.. ++..|++.+..+.. +.-.||.--+| |++
T Consensus 83 ~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~-~~~~DIliPcAl-~~~I~~~na~~i~~-~~ak~I~EgAN~p~t 159 (254)
T cd05313 83 EKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPW-EVPCDIAFPCAT-QNEVDAEDAKLLVK-NGCKYVAEGANMPCT 159 (254)
T ss_pred HHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchh-cCCCcEEEeccc-cccCCHHHHHHHHH-cCCEEEEeCCCCCCC
Confidence 211 1110000 001222322 457899996655 67999999999843 35689999998 773
Q ss_pred CCCCCHHHHhc
Q 008629 419 QSECTAEEAYT 429 (559)
Q Consensus 419 ~~EctpedA~~ 429 (559)
+ .+++.+.
T Consensus 160 -~--~a~~~L~ 167 (254)
T cd05313 160 -A--EAIEVFR 167 (254)
T ss_pred -H--HHHHHHH
Confidence 2 2445444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.044 Score=59.83 Aligned_cols=210 Identities=14% Similarity=0.195 Sum_probs=112.9
Q ss_pred cHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 256 NAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 256 ~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
.||+.=+|.|.+.-+ -.|.-+|+-+|+=-|.+.- .++++.|++|+|||.+|-.+|..|.. .|. +
T Consensus 143 ~A~~~aKrVrteT~I----~~~~vSv~~~Av~la~~~~-~~l~~kkvlviGaG~~a~~va~~L~~-----~g~------~ 206 (414)
T PRK13940 143 KVFATAKRVRSETRI----GHCPVSVAFSAITLAKRQL-DNISSKNVLIIGAGQTGELLFRHVTA-----LAP------K 206 (414)
T ss_pred HHHHHHHHHHhccCC----CCCCcCHHHHHHHHHHHHh-cCccCCEEEEEcCcHHHHHHHHHHHH-----cCC------C
Confidence 566666666653211 0122234444443343333 35889999999999999888887754 365 6
Q ss_pred cEEEEcccCccccCCcCCCchhchhhc-cccCCCCCHHHHhcccCCcEEEeccCCCC-CCCHHHHHHHHcCCCCcE-EEe
Q 008629 336 KICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVKVIKPTILIGSSGVGR-TFTKEVIEAMASFNEKPL-ILA 412 (559)
Q Consensus 336 ~i~lvD~~GLi~~~R~~~l~~~k~~fA-~~~~~~~~L~e~V~~vkPtvLIG~S~~~g-~Ft~evv~~Ma~~~erPI-IFa 412 (559)
+|+++++. .+|. ......|. ....+..+|.+.+.. .|++|-+++.+. ++|++.++ .+|+ |+=
T Consensus 207 ~I~V~nRt----~~ra---~~La~~~~~~~~~~~~~l~~~l~~--aDiVI~aT~a~~~vi~~~~~~------~~~~~~iD 271 (414)
T PRK13940 207 QIMLANRT----IEKA---QKITSAFRNASAHYLSELPQLIKK--ADIIIAAVNVLEYIVTCKYVG------DKPRVFID 271 (414)
T ss_pred EEEEECCC----HHHH---HHHHHHhcCCeEecHHHHHHHhcc--CCEEEECcCCCCeeECHHHhC------CCCeEEEE
Confidence 79988774 2221 11222221 011123457777775 999999887663 67866542 4665 467
Q ss_pred cCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHH----
Q 008629 413 LSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAAS---- 488 (559)
Q Consensus 413 LSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA---- 488 (559)
|++|-.-- | . .+...|+++|===-|-.+......-..+....|-
T Consensus 272 LavPRdid---p--~---------------------------v~~l~~v~l~~iDdl~~i~~~n~~~R~~~~~~a~~iI~ 319 (414)
T PRK13940 272 ISIPQALD---P--K---------------------------LGELEQNVYYCVDDINAVIEDNKDKRKYESSKAQKIIV 319 (414)
T ss_pred eCCCCCCC---c--c---------------------------ccCcCCeEEEeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997210 0 0 0111223322211222222221111111122211
Q ss_pred HHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHh
Q 008629 489 EALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 530 (559)
Q Consensus 489 ~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~ 530 (559)
+.+.++. +.+....+-|-+.++|+-...|...-.+.+.+.
T Consensus 320 e~~~~f~--~w~~~~~~~p~I~~lr~~~~~i~~~el~r~~~~ 359 (414)
T PRK13940 320 KSLEEYL--EKEKAIISNSAIKELFQKADGLVDLSLEKSLAK 359 (414)
T ss_pred HHHHHHH--HHHHhccchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222221 134456789999999988888888888877754
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.089 Score=55.02 Aligned_cols=96 Identities=17% Similarity=0.331 Sum_probs=76.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.-++-.+.+|+..+++++|+|. .|..+|.+|.. .| ..+++++++.
T Consensus 136 ~~~PcTp~ai~~ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~-----~g-------atVtv~~s~t----------- 192 (286)
T PRK14175 136 TFVPCTPLGIMEILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQ-----KN-------ASVTILHSRS----------- 192 (286)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCchhHHHHHHHHHH-----CC-------CeEEEEeCCc-----------
Confidence 445778899999999999999999999999988 99999999864 24 3577777531
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
.+|.+.++. +|++|...+.++.|++++++ +.-+|+=++.|
T Consensus 193 -------------~~l~~~~~~--ADIVIsAvg~p~~i~~~~vk------~gavVIDvGi~ 232 (286)
T PRK14175 193 -------------KDMASYLKD--ADVIVSAVGKPGLVTKDVVK------EGAVIIDVGNT 232 (286)
T ss_pred -------------hhHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEcCCC
Confidence 257788886 99999999999999998774 44566655543
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.044 Score=56.70 Aligned_cols=90 Identities=18% Similarity=0.290 Sum_probs=57.4
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch-hchhhc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH-FKKPWA 362 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~-~k~~fA 362 (559)
.|++.+++..+..++..+++++|||.||-.++..|.. .|+ ++|+++|+. ..|.+.|.+ .+..+.
T Consensus 112 ~G~~~~l~~~~~~~~~k~vlIlGaGGaaraia~aL~~-----~G~------~~I~I~nR~----~~ka~~la~~l~~~~~ 176 (284)
T PRK12549 112 SGFAESFRRGLPDASLERVVQLGAGGAGAAVAHALLT-----LGV------ERLTIFDVD----PARAAALADELNARFP 176 (284)
T ss_pred HHHHHHHHhhccCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEECCC----HHHHHHHHHHHHhhCC
Confidence 4567777765567888999999999999999888875 375 679999985 233222221 111111
Q ss_pred c-ccCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 363 H-EHEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 363 ~-~~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
. ......++.+.++. +|++|.++..|
T Consensus 177 ~~~~~~~~~~~~~~~~--aDiVInaTp~G 203 (284)
T PRK12549 177 AARATAGSDLAAALAA--ADGLVHATPTG 203 (284)
T ss_pred CeEEEeccchHhhhCC--CCEEEECCcCC
Confidence 0 01112345556653 89999988655
|
|
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.35 E-value=0.098 Score=55.41 Aligned_cols=118 Identities=25% Similarity=0.333 Sum_probs=80.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
|.-+.|+|..|..-. .||+|+|| |..|.-+|..|.. .|+ ...+.|+|.+- ..+-.-+|.+-.. +.
T Consensus 4 ~~~~~~~~~~~~~~~-~KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~el~L~Di~~--~~g~a~Dl~~~~~-~~ 69 (323)
T PLN00106 4 ASSLRACRAKGGAPG-FKVAVLGAAGGIGQPLSLLMKM-----NPL-----VSELHLYDIAN--TPGVAADVSHINT-PA 69 (323)
T ss_pred hhhhhccccccCCCC-CEEEEECCCCHHHHHHHHHHHh-----CCC-----CCEEEEEecCC--CCeeEchhhhCCc-Cc
Confidence 345678888887665 59999999 9999999987764 254 25799999865 1111112332211 11
Q ss_pred ccc--CCCCCHHHHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 363 HEH--EPVNNLLDAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 363 ~~~--~~~~~L~e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+-. ...+++.++++. .|++|=+.+.+.. ..+++++.+.+++.+.||+.-|||.
T Consensus 70 ~i~~~~~~~d~~~~l~~--aDiVVitAG~~~~~g~~R~dll~~N~~i~~~i~~~i~~~~p~aivivvSNPv 138 (323)
T PLN00106 70 QVRGFLGDDQLGDALKG--ADLVIIPAGVPRKPGMTRDDLFNINAGIVKTLCEAVAKHCPNALVNIISNPV 138 (323)
T ss_pred eEEEEeCCCCHHHHcCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 111 123467888886 8888877665422 3467788889999999999999999
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.28 Score=47.52 Aligned_cols=121 Identities=20% Similarity=0.302 Sum_probs=75.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.||+--++-|++ |.|+..|...++|++|-|--|-|||+.+... |. ++.++|.+=+ ..++
T Consensus 3 yG~g~S~~d~i~---r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~-----Ga-------~V~V~e~DPi------~alq 61 (162)
T PF00670_consen 3 YGTGQSLVDGIM---RATNLMLAGKRVVVIGYGKVGKGIARALRGL-----GA-------RVTVTEIDPI------RALQ 61 (162)
T ss_dssp HHHHHHHHHHHH---HHH-S--TTSEEEEE--SHHHHHHHHHHHHT-----T--------EEEEE-SSHH------HHHH
T ss_pred cccchhHHHHHH---hcCceeeCCCEEEEeCCCcccHHHHHHHhhC-----CC-------EEEEEECChH------HHHH
Confidence 467776777776 5788999999999999999999999998763 53 5676665310 0122
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 429 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~ 429 (559)
.+- +.-+..++.|+++. +|++|-+++...+.+.|.++.|. +.-|+.-..- ..-|+.-+..-+
T Consensus 62 A~~-----dGf~v~~~~~a~~~--adi~vtaTG~~~vi~~e~~~~mk---dgail~n~Gh--~d~Eid~~~L~~ 123 (162)
T PF00670_consen 62 AAM-----DGFEVMTLEEALRD--ADIFVTATGNKDVITGEHFRQMK---DGAILANAGH--FDVEIDVDALEA 123 (162)
T ss_dssp HHH-----TT-EEE-HHHHTTT---SEEEE-SSSSSSB-HHHHHHS----TTEEEEESSS--STTSBTHHHHHT
T ss_pred hhh-----cCcEecCHHHHHhh--CCEEEECCCCccccCHHHHHHhc---CCeEEeccCc--CceeEeeccccc
Confidence 111 22223479999985 99999999988899999999997 5556654443 236777766443
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.063 Score=49.04 Aligned_cols=108 Identities=22% Similarity=0.334 Sum_probs=67.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|+.+|++..+.++++.+++|+|+|..|..+++.+... |. .+++++|+. .++ .......+..
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~-----g~------~~v~v~~r~----~~~---~~~~~~~~~~ 65 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAEL-----GA------AKIVIVNRT----LEK---AKALAERFGE 65 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHC-----CC------CEEEEEcCC----HHH---HHHHHHHHhh
Confidence 58899999988889999999999998888888777542 31 568888874 111 2222222221
Q ss_pred c--cCCCCCHHHHhcccCCcEEEeccCCCC------CCCHHHHHHHHcCCCCcEEEecC-CCC
Q 008629 364 E--HEPVNNLLDAVKVIKPTILIGSSGVGR------TFTKEVIEAMASFNEKPLILALS-NPT 417 (559)
Q Consensus 364 ~--~~~~~~L~e~V~~vkPtvLIG~S~~~g------~Ft~evv~~Ma~~~erPIIFaLS-NPt 417 (559)
. .....++.++++ ++|++|-+...+- .|.+.. ..+..+|+=+| +|.
T Consensus 66 ~~~~~~~~~~~~~~~--~~Dvvi~~~~~~~~~~~~~~~~~~~------~~~~~~v~D~~~~~~ 120 (155)
T cd01065 66 LGIAIAYLDLEELLA--EADLIINTTPVGMKPGDELPLPPSL------LKPGGVVYDVVYNPL 120 (155)
T ss_pred cccceeecchhhccc--cCCEEEeCcCCCCCCCCCCCCCHHH------cCCCCEEEEcCcCCC
Confidence 1 012345667666 4999998776442 132222 23667787775 454
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.12 Score=49.67 Aligned_cols=54 Identities=31% Similarity=0.441 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
|++.+++.+..+++..|..+++.+++++|+ |..|..++..+.. .| .++++++++
T Consensus 7 ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~-----~g-------~~V~l~~R~ 61 (194)
T cd01078 7 TAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAR-----EG-------ARVVLVGRD 61 (194)
T ss_pred HHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHH-----CC-------CEEEEEcCC
Confidence 677777778888888889999999999997 9988888887764 24 368888764
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.079 Score=56.84 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=63.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----ccCCCCCHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNLL 372 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~----~~~~~~~L~ 372 (559)
+...+++|+|+|.+|.++++.+... |. ++.++|++ ..| +......|.. ...+...|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~l-----Ga-------~V~v~d~~----~~~---~~~l~~~~g~~v~~~~~~~~~l~ 225 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGL-----GA-------TVTILDIN----IDR---LRQLDAEFGGRIHTRYSNAYEIE 225 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHC-----CC-------eEEEEECC----HHH---HHHHHHhcCceeEeccCCHHHHH
Confidence 5678899999999999999988653 63 48888874 111 2222112211 111123578
Q ss_pred HHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 373 DAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
+.++. .|++|.+... +.++|++.++.|. ++.+|+-+|-
T Consensus 226 ~~l~~--aDvVI~a~~~~g~~~p~lit~~~l~~mk---~g~vIvDva~ 268 (370)
T TIGR00518 226 DAVKR--ADLLIGAVLIPGAKAPKLVSNSLVAQMK---PGAVIVDVAI 268 (370)
T ss_pred HHHcc--CCEEEEccccCCCCCCcCcCHHHHhcCC---CCCEEEEEec
Confidence 88874 8999988633 4468999999985 5678887774
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.19 Score=49.41 Aligned_cols=122 Identities=17% Similarity=0.214 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHHHh--CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 278 TASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 278 TaaV~LAgll~Alr~~--g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
||-=+..++-.+++.. +.+|++.+|+|.|.|..|..+|+.|.+. |. +++++|++. +.+.
T Consensus 5 Tg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~-----G~-------~Vvv~D~~~-------~~~~ 65 (200)
T cd01075 5 TAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEE-----GA-------KLIVADINE-------EAVA 65 (200)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEcCCH-------HHHH
Confidence 5555566677777775 8899999999999999999999988753 63 688888651 1233
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
.++..|.. ... +..+... .+.|+++=++. ++..|++.++.|. -++|..-+| |++. ..+++.++
T Consensus 66 ~~~~~~g~--~~v-~~~~l~~-~~~Dv~vp~A~-~~~I~~~~~~~l~----~~~v~~~AN~~~~~--~~~~~~L~ 129 (200)
T cd01075 66 RAAELFGA--TVV-APEEIYS-VDADVFAPCAL-GGVINDDTIPQLK----AKAIAGAANNQLAD--PRHGQMLH 129 (200)
T ss_pred HHHHHcCC--EEE-cchhhcc-ccCCEEEeccc-ccccCHHHHHHcC----CCEEEECCcCccCC--HhHHHHHH
Confidence 33333311 111 2233333 36999995555 6799999999994 678888888 6632 33455554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.18 Score=53.93 Aligned_cols=122 Identities=11% Similarity=0.166 Sum_probs=72.5
Q ss_pred CcHHHHHHHHcCCCCeeecCCcchhHHHHHH--HHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhh
Q 008629 255 HNAFELLAKYGTTHLVFNDDIQGTASVVLAG--VVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEE 332 (559)
Q Consensus 255 ~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAg--ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~ee 332 (559)
..||..=+|.|.+.-+ |.++|.++. +..+ +.. .+|++.+++++|||..|--+|+.|.. .|.
T Consensus 136 ~~A~~~aKrVRteT~I------~~~~vSv~s~av~~~-~~~-~~l~~k~vLvIGaGem~~l~a~~L~~-----~g~---- 198 (338)
T PRK00676 136 QKALKEGKVFRSKGGA------PYAEVTIESVVQQEL-RRR-QKSKKASLLFIGYSEINRKVAYYLQR-----QGY---- 198 (338)
T ss_pred HHHHHHHHHHhhhcCC------CCCCcCHHHHHHHHH-HHh-CCccCCEEEEEcccHHHHHHHHHHHH-----cCC----
Confidence 3566666666653211 444444443 3333 333 56999999999999988777776655 365
Q ss_pred hcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHH-HHhc-ccCCcEEEec----cCCCCCCCHHHHHHHHcCCC
Q 008629 333 TRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL-DAVK-VIKPTILIGS----SGVGRTFTKEVIEAMASFNE 406 (559)
Q Consensus 333 A~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~-e~V~-~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~e 406 (559)
++|+++.+.-. + .+|.. +. +++. ..+.||+|-. +++....+.+.++.. -+
T Consensus 199 --~~i~v~nRt~~----~--------~~~~~-------~~~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~~~~~~---~~ 254 (338)
T PRK00676 199 --SRITFCSRQQL----T--------LPYRT-------VVREELSFQDPYDVIFFGSSESAYAFPHLSWESLADI---PD 254 (338)
T ss_pred --CEEEEEcCCcc----c--------cchhh-------hhhhhhhcccCCCEEEEcCCcCCCCCceeeHHHHhhc---cC
Confidence 67998877531 1 22321 10 1111 1358999964 333346677765532 22
Q ss_pred CcEEEecCCCCC
Q 008629 407 KPLILALSNPTS 418 (559)
Q Consensus 407 rPIIFaLSNPt~ 418 (559)
| ++|=||+|-.
T Consensus 255 r-~~iDLAvPRd 265 (338)
T PRK00676 255 R-IVFDFNVPRT 265 (338)
T ss_pred c-EEEEecCCCC
Confidence 4 9999999984
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.088 Score=54.32 Aligned_cols=104 Identities=19% Similarity=0.177 Sum_probs=63.1
Q ss_pred CCCeeecCCcchhHHHHHHHHHHHHHhCC--CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 267 THLVFNDDIQGTASVVLAGVVAALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 267 ~~~~FnDDiQGTaaV~LAgll~Alr~~g~--~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
+..=+|-|.. |++.+++-.+. .+++.+++++|||.||-.|+-.|.. .|. ++|+++++.
T Consensus 99 ~l~G~NTD~~--------G~~~~l~~~~~~~~~~~k~vlvlGaGGaarai~~aL~~-----~G~------~~i~I~nRt- 158 (282)
T TIGR01809 99 IWKGDNTDWD--------GIAGALANIGKFEPLAGFRGLVIGAGGTSRAAVYALAS-----LGV------TDITVINRN- 158 (282)
T ss_pred cEEEecCCHH--------HHHHHHHhhCCccccCCceEEEEcCcHHHHHHHHHHHH-----cCC------CeEEEEeCC-
Confidence 3455777754 45667776663 6889999999999998888777654 375 689999874
Q ss_pred ccccCCcCCCchhchhhcccc--CCCC---CHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 008629 345 LIVSSRKDSLQHFKKPWAHEH--EPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEVI 398 (559)
Q Consensus 345 Li~~~R~~~l~~~k~~fA~~~--~~~~---~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 398 (559)
.+|.+.|.+ .|.... .... ++.+++. ++|++|.++..+-.++.+.+
T Consensus 159 ---~~ka~~La~---~~~~~~~~~~~~~~~~~~~~~~--~~DiVInaTp~g~~~~~~~l 209 (282)
T TIGR01809 159 ---PDKLSRLVD---LGVQVGVITRLEGDSGGLAIEK--AAEVLVSTVPADVPADYVDL 209 (282)
T ss_pred ---HHHHHHHHH---HhhhcCcceeccchhhhhhccc--CCCEEEECCCCCCCCCHHHh
Confidence 233222321 111100 0111 2333343 58999999887754554433
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.067 Score=45.31 Aligned_cols=95 Identities=13% Similarity=0.249 Sum_probs=62.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE-cccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV-DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv-D~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||.|+|+|..|..+++.+... |. ...+|+++ +++ .+.+.+.++.|..... ..+..|+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~-----g~----~~~~v~~~~~r~-------~~~~~~~~~~~~~~~~-~~~~~~~~~~-- 61 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLAS-----GI----KPHEVIIVSSRS-------PEKAAELAKEYGVQAT-ADDNEEAAQE-- 61 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHT-----TS-----GGEEEEEEESS-------HHHHHHHHHHCTTEEE-SEEHHHHHHH--
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC----CceeEEeeccCc-------HHHHHHHHHhhccccc-cCChHHhhcc--
Confidence 789999999999999888763 54 34677755 543 1224444434321100 1268999995
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
+|++| ++-.+ ..-+++++.+....+..+|.-++||
T Consensus 62 advvi-lav~p-~~~~~v~~~i~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 62 ADVVI-LAVKP-QQLPEVLSEIPHLLKGKLVISIAAG 96 (96)
T ss_dssp TSEEE-E-S-G-GGHHHHHHHHHHHHTTSEEEEESTT
T ss_pred CCEEE-EEECH-HHHHHHHHHHhhccCCCEEEEeCCC
Confidence 99888 66655 4566788888667788899888886
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.11 Score=53.29 Aligned_cols=123 Identities=16% Similarity=0.170 Sum_probs=71.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc-------hhhccc--------
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-------KPWAHE-------- 364 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k-------~~fA~~-------- 364 (559)
.||.|+|+|..|.+||..+... |. +++++|.+- + .++..+ ..+...
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~~----~---~l~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFH-----GF-------DVTIYDISD----E---ALEKAKERIAKLADRYVRDLEATKEAP 64 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhc-----CC-------eEEEEeCCH----H---HHHHHHHHHHHHHHHHHHcCCCChhhh
Confidence 5899999999999999888653 53 688898641 1 111111 011000
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEE
Q 008629 365 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIF 437 (559)
Q Consensus 365 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aif 437 (559)
-....++.++++. .|++|=+-...-.+.+++++...+.+....|+ .||.+++ .+.++.+.++-.-=|
T Consensus 65 ~~~~~~~i~~~~d~~~a~~~--aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii-~sntSt~---~~~~~~~~~~~~~r~ 138 (287)
T PRK08293 65 AEAALNRITLTTDLAEAVKD--ADLVIEAVPEDPEIKGDFYEELAKVAPEKTIF-ATNSSTL---LPSQFAEATGRPEKF 138 (287)
T ss_pred HHHHHcCeEEeCCHHHHhcC--CCEEEEeccCCHHHHHHHHHHHHhhCCCCCEE-EECcccC---CHHHHHhhcCCcccE
Confidence 0112578888875 78888543322235677788887776665666 3566554 444444433211113
Q ss_pred eeCCCCCCce
Q 008629 438 ASGSPFDPFE 447 (559)
Q Consensus 438 AsGSPF~pv~ 447 (559)
....||.|+.
T Consensus 139 vg~Hf~~p~~ 148 (287)
T PRK08293 139 LALHFANEIW 148 (287)
T ss_pred EEEcCCCCCC
Confidence 3457888764
|
|
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.6 Score=48.94 Aligned_cols=93 Identities=15% Similarity=0.213 Sum_probs=76.0
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-+|++..++-.+.+|+..+++++|-|. .|.-+|.+|.. .|. .+.+++++
T Consensus 138 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~-----~~a-------tVtv~hs~------------- 192 (285)
T PRK10792 138 LRPCTPRGIMTLLERYGIDTYGLNAVVVGASNIVGRPMSLELLL-----AGC-------TVTVCHRF------------- 192 (285)
T ss_pred CCCCCHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------eEEEEECC-------------
Confidence 34778899999999999999999999999998 99999998864 243 46677653
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.++|.+.+++ +|++|-+.+.++.|+.++|+ +.-+|.=..
T Consensus 193 -----------T~~l~~~~~~--ADIvi~avG~p~~v~~~~vk------~gavVIDvG 231 (285)
T PRK10792 193 -----------TKNLRHHVRN--ADLLVVAVGKPGFIPGEWIK------PGAIVIDVG 231 (285)
T ss_pred -----------CCCHHHHHhh--CCEEEEcCCCcccccHHHcC------CCcEEEEcc
Confidence 1358888886 99999999999999999987 666776555
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=93.82 E-value=0.14 Score=52.18 Aligned_cols=128 Identities=23% Similarity=0.329 Sum_probs=87.1
Q ss_pred CcchhHHHHHHHHHHHHHhCCC-cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 353 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~-l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~ 353 (559)
-+-||-=+..++-.+++..|.. ++..|++|-|.|..|...|+.|.+. |. +=+-+.|++|.|++..+-+
T Consensus 7 ~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~-----Ga------~vv~vsD~~G~i~~~~Gld 75 (244)
T PF00208_consen 7 SEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAEL-----GA------KVVAVSDSSGAIYDPDGLD 75 (244)
T ss_dssp TTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHT-----TE------EEEEEEESSEEEEETTEEH
T ss_pred CcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHc-----CC------EEEEEecCceEEEcCCCch
Confidence 3457777778888888886766 9999999999999999999999773 53 4466778888888654211
Q ss_pred CchhchhhccccCC-CCCHH-----------H--HhcccCCcEEEeccCCCCCCCHHHHH-HHHcCCCCcEEEecCC-CC
Q 008629 354 LQHFKKPWAHEHEP-VNNLL-----------D--AVKVIKPTILIGSSGVGRTFTKEVIE-AMASFNEKPLILALSN-PT 417 (559)
Q Consensus 354 l~~~k~~fA~~~~~-~~~L~-----------e--~V~~vkPtvLIG~S~~~g~Ft~evv~-~Ma~~~erPIIFaLSN-Pt 417 (559)
.+..... .+.... ...+. + .+-.++.||||=+ +.++.+|++.+. .+.. .-+||.--+| |+
T Consensus 76 ~~~l~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~-A~~~~I~~~~~~~~i~~--~akiIvegAN~p~ 151 (244)
T PF00208_consen 76 VEELLRI-KEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPC-ALGNVINEDNAPSLIKS--GAKIIVEGANGPL 151 (244)
T ss_dssp HHHHHHH-HHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEE-SSSTSBSCHHHCHCHHT--T-SEEEESSSSSB
T ss_pred HHHHHHH-HHHhCCcccccccccccceeEeccccccccccccEEEEc-CCCCeeCHHHHHHHHhc--cCcEEEeCcchhc
Confidence 1111111 111111 11111 1 3445699999988 667899999998 6642 4689999999 55
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.65 E-value=0.38 Score=50.52 Aligned_cols=105 Identities=22% Similarity=0.264 Sum_probs=66.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCCCCHHHHhcc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~ 377 (559)
.||+|+|| |..|..+|.+|... .+. ...+.++|++-. ..+..-++.+. .....- .....++.+.++.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~----~~~-----~~el~L~d~~~~-~~g~alDl~~~-~~~~~i~~~~~~d~~~~l~~ 69 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQ----LPA-----GSELSLYDIAPV-TPGVAVDLSHI-PTAVKIKGFSGEDPTPALEG 69 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcC----CCC-----ccEEEEEecCCC-CcceehhhhcC-CCCceEEEeCCCCHHHHcCC
Confidence 38999999 99999998877542 132 256889997522 11100012211 000000 0012467788876
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |. ..+++++.|.+++.+.+|+-.|||.
T Consensus 70 --~DiVIitaG~~~~~~~~R~dll~~N~~i~~~ii~~i~~~~~~~ivivvsNP~ 121 (312)
T PRK05086 70 --ADVVLISAGVARKPGMDRSDLFNVNAGIVKNLVEKVAKTCPKACIGIITNPV 121 (312)
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888666653 21 5578999999999999999999998
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=93.40 E-value=0.13 Score=50.57 Aligned_cols=38 Identities=29% Similarity=0.391 Sum_probs=33.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|..|.-+|+.|+.+ |+ ++|+++|.+
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~-----Gv------~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGA-----GV------GTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEecCC
Confidence 478899999999999999999988764 76 789999997
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.67 Score=43.60 Aligned_cols=89 Identities=18% Similarity=0.184 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch
Q 008629 280 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK 359 (559)
Q Consensus 280 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~ 359 (559)
-++..|++..++..|.+++.++|+++|.+.. +.+-+...|.+ .|. .+..+|++.
T Consensus 9 p~t~~a~~~ll~~~~~~~~gk~v~VvGrs~~---vG~pla~lL~~-~ga-------tV~~~~~~t--------------- 62 (140)
T cd05212 9 SPVAKAVKELLNKEGVRLDGKKVLVVGRSGI---VGAPLQCLLQR-DGA-------TVYSCDWKT--------------- 62 (140)
T ss_pred ccHHHHHHHHHHHcCCCCCCCEEEEECCCch---HHHHHHHHHHH-CCC-------EEEEeCCCC---------------
Confidence 4678899999999999999999999998754 44555554444 353 466666531
Q ss_pred hhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 360 PWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 360 ~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
++|.+.++. +|++|-..+.++.|+.++|| +.-+|.
T Consensus 63 ---------~~l~~~v~~--ADIVvsAtg~~~~i~~~~ik------pGa~Vi 97 (140)
T cd05212 63 ---------IQLQSKVHD--ADVVVVGSPKPEKVPTEWIK------PGATVI 97 (140)
T ss_pred ---------cCHHHHHhh--CCEEEEecCCCCccCHHHcC------CCCEEE
Confidence 268888986 99999999999999999997 455555
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.17 Score=55.45 Aligned_cols=126 Identities=15% Similarity=0.259 Sum_probs=75.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCC-----CCCHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLLD 373 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~e 373 (559)
.||+|+||||. -...++-..+.+...+ ..+.|||+|-+- ..|-+.+...-+.+++. ..+ ..++.|
T Consensus 1 ~KI~iIGaGS~--~tp~li~~l~~~~~~l----~~~ei~L~Did~---~~rl~~v~~~~~~~~~~~~~~~~v~~t~d~~~ 71 (419)
T cd05296 1 MKLTIIGGGSS--YTPELIEGLIRRYEEL----PVTELVLVDIDE---EEKLEIVGALAKRMVKKAGLPIKVHLTTDRRE 71 (419)
T ss_pred CEEEEECCchH--hHHHHHHHHHhccccC----CCCEEEEecCCh---HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHHH
Confidence 48999999996 4444444433322233 237899999862 22211111111122221 111 257999
Q ss_pred HhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCCC
Q 008629 374 AVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTSQ 419 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~~ 419 (559)
|++. +|.+|=.-.+||. .=.++++.|.++|+.-+|+=.|||..
T Consensus 72 al~g--adfVi~~~~vg~~~~r~~de~i~~~~Gi~gqET~G~GG~~~a~rni~ii~~i~~~i~~~~Pda~lin~TNP~~- 148 (419)
T cd05296 72 ALEG--ADFVFTQIRVGGLEARALDERIPLKHGVIGQETTGAGGFAKALRTIPVILDIAEDVEELAPDAWLINFTNPAG- 148 (419)
T ss_pred HhCC--CCEEEEEEeeCCcchhhhhhhhHHHcCCccccCCCcchHHHhhhhHHHHHHHHHHHHHHCCCeEEEEecCHHH-
Confidence 9986 7877755555542 12378888999999999999999983
Q ss_pred CCCCHHHHhcccCCcEEEeeC
Q 008629 420 SECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 420 ~EctpedA~~wt~G~aifAsG 440 (559)
+..+-++++++-| +|.+|
T Consensus 149 --ivt~a~~k~~~~r-viGlc 166 (419)
T cd05296 149 --IVTEAVLRHTGDR-VIGLC 166 (419)
T ss_pred --HHHHHHHHhccCC-EEeeC
Confidence 4444556666444 55544
|
Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.58 Score=52.65 Aligned_cols=106 Identities=17% Similarity=0.253 Sum_probs=63.7
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC---C------------chhchh
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS---L------------QHFKKP 360 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~---l------------~~~k~~ 360 (559)
.....|++|+|||.+|++.+..... .| | +++.+|.. .+|.+. + ......
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~-----lG-----A--~V~a~D~~----~~rle~aeslGA~~v~i~~~e~~~~~~g 225 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGS-----LG-----A--IVRAFDTR----PEVAEQVESMGAEFLELDFEEEGGSGDG 225 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHH-----CC-----C--EEEEEeCC----HHHHHHHHHcCCeEEEeccccccccccc
Confidence 3458999999999999888766654 36 2 47777764 111100 0 001112
Q ss_pred hccccCCCCCH--------HHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCH
Q 008629 361 WAHEHEPVNNL--------LDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNPT-SQSECTA 424 (559)
Q Consensus 361 fA~~~~~~~~L--------~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectp 424 (559)
|++... .++ .+.++ +.|++|.+++.+| +++++.++.|. +.-+|.=++.+. ..+|++.
T Consensus 226 ya~~~s--~~~~~~~~~~~~~~~~--gaDVVIetag~pg~~aP~lit~~~v~~mk---pGgvIVdvg~~~GG~~e~t~ 296 (509)
T PRK09424 226 YAKVMS--EEFIKAEMALFAEQAK--EVDIIITTALIPGKPAPKLITAEMVASMK---PGSVIVDLAAENGGNCELTV 296 (509)
T ss_pred hhhhcc--hhHHHHHHHHHHhccC--CCCEEEECCCCCcccCcchHHHHHHHhcC---CCCEEEEEccCCCCCccccc
Confidence 333211 122 22222 4999999999866 67999999997 555666677753 3345553
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=92.95 E-value=0.071 Score=49.59 Aligned_cols=104 Identities=22% Similarity=0.384 Sum_probs=65.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-CccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
||.|+|| |..|..+|-+|+.. |+ -+.|.|+|.+ .... +..-+|.+..-+.-++..-..+..+.++.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~-----~l-----~~ei~L~D~~~~~~~-g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~- 69 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQ-----GL-----ADEIVLIDINEDKAE-GEALDLSHASAPLPSPVRITSGDYEALKD- 69 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TT-----SSEEEEEESSHHHHH-HHHHHHHHHHHGSTEEEEEEESSGGGGTT-
T ss_pred EEEEECCCChHHHHHHHHHHhC-----CC-----CCceEEeccCcccce-eeehhhhhhhhhccccccccccccccccc-
Confidence 8999999 99999999988763 65 2559999987 2111 11001322221111111111255666775
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- +-+++.+.+.+++...+++-.|||.
T Consensus 70 -aDivvitag~~~~~g~sR~~ll~~N~~i~~~~~~~i~~~~p~~~vivvtNPv 121 (141)
T PF00056_consen 70 -ADIVVITAGVPRKPGMSRLDLLEANAKIVKEIAKKIAKYAPDAIVIVVTNPV 121 (141)
T ss_dssp -ESEEEETTSTSSSTTSSHHHHHHHHHHHHHHHHHHHHHHSTTSEEEE-SSSH
T ss_pred -ccEEEEeccccccccccHHHHHHHhHhHHHHHHHHHHHhCCccEEEEeCCcH
Confidence 89998665543 21 2246777888899999999999998
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK08328 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.93 E-value=0.06 Score=54.04 Aligned_cols=120 Identities=18% Similarity=0.204 Sum_probs=73.5
Q ss_pred HHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE
Q 008629 261 LAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 340 (559)
Q Consensus 261 L~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv 340 (559)
++||..++..|..+.| .+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++
T Consensus 7 ~~ry~Rq~~~~g~~~q------------------~~L~~~~VlIiG~GGlGs~ia~~La~~-----Gv------g~i~lv 57 (231)
T PRK08328 7 LERYDRQIMIFGVEGQ------------------EKLKKAKVAVVGVGGLGSPVAYYLAAA-----GV------GRILLI 57 (231)
T ss_pred HHHHhhHHHhcCHHHH------------------HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEE
Confidence 5788777666654321 457788999999999999999999764 76 789999
Q ss_pred cccCccccCCcCCCchhchhhccccCCC----CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCC
Q 008629 341 DSKGLIVSSRKDSLQHFKKPWAHEHEPV----NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSN 415 (559)
Q Consensus 341 D~~GLi~~~R~~~l~~~k~~fA~~~~~~----~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSN 415 (559)
|.+ .+.. .+|..+ --|-.+.-.. ....+.++...|++.|=... +-++++-+...-+ +..+|| +.-|
T Consensus 58 D~D-~ve~---sNL~Rq-~l~~~~dvG~~~k~~~a~~~l~~~np~v~v~~~~--~~~~~~~~~~~l~--~~D~Vid~~d~ 128 (231)
T PRK08328 58 DEQ-TPEL---SNLNRQ-ILHWEEDLGKNPKPLSAKWKLERFNSDIKIETFV--GRLSEENIDEVLK--GVDVIVDCLDN 128 (231)
T ss_pred cCC-ccCh---hhhccc-cccChhhcCchHHHHHHHHHHHHhCCCCEEEEEe--ccCCHHHHHHHHh--cCCEEEECCCC
Confidence 987 2221 124321 1111111111 12344567778998876533 3467665554332 456777 4557
Q ss_pred CCC
Q 008629 416 PTS 418 (559)
Q Consensus 416 Pt~ 418 (559)
+.+
T Consensus 129 ~~~ 131 (231)
T PRK08328 129 FET 131 (231)
T ss_pred HHH
Confidence 653
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=92.91 E-value=0.17 Score=49.88 Aligned_cols=108 Identities=19% Similarity=0.236 Sum_probs=67.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC--CCCHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP--VNNLL 372 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~--~~~L~ 372 (559)
.+|++.||+|+|+|..|.+||..|+.+ |+ +++.++|.+=+ .. .+|+.+ ..+..+-.. ...+.
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~Rq-~~~~~~iG~~Ka~~~~ 80 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARA-----GI------GKLILVDFDVV-EP---SNLNRQ-QYKASQVGEPKTEALK 80 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCCEE-cc---cccccc-cCChhhCCCHHHHHHH
Confidence 468899999999999999999999764 76 78999999822 22 235542 222211111 12467
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCCCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPTSQSEC 422 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt~~~Ec 422 (559)
+.++.+.|++-|-. ...-++++-+...-+ .--+|+ +.-||..+.+.
T Consensus 81 ~~l~~inp~~~i~~--~~~~i~~~~~~~~~~--~~DlVi~a~Dn~~~k~~l 127 (200)
T TIGR02354 81 ENISEINPYTEIEA--YDEKITEENIDKFFK--DADIVCEAFDNAEAKAML 127 (200)
T ss_pred HHHHHHCCCCEEEE--eeeeCCHhHHHHHhc--CCCEEEECCCCHHHHHHH
Confidence 77778888865433 233567766665433 233555 55676655443
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.22 Score=50.50 Aligned_cols=127 Identities=20% Similarity=0.305 Sum_probs=77.4
Q ss_pred EEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh-ccccCCCCCHHHHhcccC
Q 008629 302 FLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 302 iv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f-A~~~~~~~~L~e~V~~vk 379 (559)
|.|+|| |..|.++|..++.. |. .....++|+|.+.-..+....+|.+...++ ...-....++.++++.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~-----~~---~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~-- 70 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADG-----SV---LLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKD-- 70 (263)
T ss_pred CEEECCCChHHHHHHHHHHhC-----CC---CcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCC--
Confidence 579999 98899999887652 41 123679999986411111111133222222 0011113567888886
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 008629 380 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 441 (559)
Q Consensus 380 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt--~G~aifAsGS 441 (559)
.|++|=+.+.++. .-+++.++|.++|+..+++-.|||. .....-+++++ ...-+|++|.
T Consensus 71 aDiVv~t~~~~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~tNP~---d~~t~~~~~~sg~~~~kviG~~~ 145 (263)
T cd00650 71 ADVVIITAGVGRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVSNPV---DIITYLVWRYSGLPKEKVIGLGT 145 (263)
T ss_pred CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCchhEEEeec
Confidence 9998866655432 3578889999999999999999998 33344455553 2233666664
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=0.41 Score=50.17 Aligned_cols=83 Identities=16% Similarity=0.169 Sum_probs=67.9
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-+|++.=++-.+.+++..+++++|.| ..|.-+|.++.. .|. .+.+++++ .
T Consensus 137 ~PcTp~avi~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~-----~gA-------tVtv~hs~-------t------ 191 (285)
T PRK14191 137 VPATPMGVMRLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLN-----AGA-------SVSVCHIL-------T------ 191 (285)
T ss_pred CCCcHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHH-----CCC-------EEEEEeCC-------c------
Confidence 457888889999999999999999999999 999999999864 253 35555432 1
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|...+.++.+++++|+
T Consensus 192 -----------~~l~~~~~~--ADIvV~AvG~p~~i~~~~vk 220 (285)
T PRK14191 192 -----------KDLSFYTQN--ADIVCVGVGKPDLIKASMVK 220 (285)
T ss_pred -----------HHHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 246778886 99999999999999999995
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.45 Score=49.30 Aligned_cols=38 Identities=11% Similarity=-0.136 Sum_probs=28.7
Q ss_pred eCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHH
Q 008629 453 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEA 490 (559)
Q Consensus 453 ~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~a 490 (559)
..||+..|-+.++.+.=++.++..--++.+-+..+.+.
T Consensus 184 ~~~G~i~nrl~~a~~~EA~~l~~~g~~~~~~id~~~~~ 221 (308)
T PRK06129 184 EIDGFVLNRLQGALLREAFRLVADGVASVDDIDAVIRD 221 (308)
T ss_pred CCccHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 35778888888888888888888777877777766543
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=92.41 E-value=0.25 Score=51.71 Aligned_cols=57 Identities=18% Similarity=0.107 Sum_probs=45.1
Q ss_pred HHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccE
Q 008629 258 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 337 (559)
Q Consensus 258 f~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i 337 (559)
|..-++|..++..|..+-| .+|++.||+|+|+|..|.-+|..|+.+ |+ ++|
T Consensus 4 ~~~~~~ysRq~~~iG~e~Q------------------~kL~~s~VlIvG~GGLGs~va~~LA~a-----GV------G~i 54 (287)
T PRK08223 4 FDYDEAFCRNLGWITPTEQ------------------QRLRNSRVAIAGLGGVGGIHLLTLARL-----GI------GKF 54 (287)
T ss_pred ccHHHHHhhhhhhcCHHHH------------------HHHhcCCEEEECCCHHHHHHHHHHHHh-----CC------CeE
Confidence 6666788766655544432 568899999999999999999988875 87 789
Q ss_pred EEEccc
Q 008629 338 CLVDSK 343 (559)
Q Consensus 338 ~lvD~~ 343 (559)
.++|.+
T Consensus 55 ~lvD~D 60 (287)
T PRK08223 55 TIADFD 60 (287)
T ss_pred EEEeCC
Confidence 999987
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=92.21 E-value=0.5 Score=49.17 Aligned_cols=125 Identities=14% Similarity=0.231 Sum_probs=74.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~v 378 (559)
||.|+|+|.+|..+|..++. .|+ ...|.++|.+-=..++-..+|.+.. .+.... -...+.. .++
T Consensus 2 kI~IIGaG~vG~~~a~~l~~-----~g~-----~~ei~l~D~~~~~~~~~a~dL~~~~-~~~~~~~~i~~~~~~-~l~-- 67 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVN-----QGI-----ADELVLIDINEEKAEGEALDLEDAL-AFLPSPVKIKAGDYS-DCK-- 67 (306)
T ss_pred EEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHhHhhHHHHh-hccCCCeEEEcCCHH-HhC--
Confidence 89999999999999998764 365 2579999985211111111122111 111100 0012333 355
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeCCC
Q 008629 379 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASGSP 442 (559)
Q Consensus 379 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifAsGSP 442 (559)
..|++|=+++.+.. .=+++.+.|.+++..-+|+-.|||.. +...-++++++ -+-+|.+|.-
T Consensus 68 ~aDIVIitag~~~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d---~~~~~~~~~~g~p~~~v~g~gt~ 144 (306)
T cd05291 68 DADIVVITAGAPQKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVASNPVD---VITYVVQKLSGLPKNRVIGTGTS 144 (306)
T ss_pred CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecChHH---HHHHHHHHHhCcCHHHEeeccch
Confidence 59999988876521 12577888889999999999999983 34444444421 1236666654
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.11 E-value=1.1 Score=48.76 Aligned_cols=158 Identities=13% Similarity=0.119 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.|=-+++.+++..|..|..|.+.++.|+|.|..|..+|+.+... |+ +++.+|... .. . .
T Consensus 95 VAE~v~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~-----G~-------~V~~~Dp~~------~~-~-~- 153 (381)
T PRK00257 95 VVDYVLGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGL-----GW-------KVLVCDPPR------QE-A-E- 153 (381)
T ss_pred HHHHHHHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEECCcc------cc-c-c-
Confidence 34457889999999999999999999999999999999998753 75 577888631 10 0 0
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEec---c-----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGS---S-----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 429 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~---S-----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~ 429 (559)
......+|.|+++. .|+++=. + ..-+.|+++.+..|. +..++.=.|. -++--++|+.
T Consensus 154 ------~~~~~~~l~ell~~--aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVde~AL~ 218 (381)
T PRK00257 154 ------GDGDFVSLERILEE--CDVISLHTPLTKEGEHPTRHLLDEAFLASLR---PGAWLINASR----GAVVDNQALR 218 (381)
T ss_pred ------cCccccCHHHHHhh--CCEEEEeCcCCCCccccccccCCHHHHhcCC---CCeEEEECCC----CcccCHHHHH
Confidence 00123479998885 7877621 1 123789999999997 6778876655 4455555442
Q ss_pred c--cCCcEEEeeCCCC--CCceeCCeeeCccCccccccchhhHHHHHHhCC
Q 008629 430 W--SKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGA 476 (559)
Q Consensus 430 w--t~G~aifAsGSPF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a 476 (559)
- ..|+...|-=-=| +|. .+.... ..|+.+-|=++-....++.
T Consensus 219 ~aL~~g~i~~a~LDV~e~EP~-~~~~L~----~~nvi~TPHiAg~s~e~~~ 264 (381)
T PRK00257 219 EALLSGEDLDAVLDVWEGEPQ-IDLELA----DLCTIATPHIAGYSLDGKA 264 (381)
T ss_pred HHHHhCCCcEEEEeCCCCCCC-CChhhh----hCCEEEcCccccCCHHHHH
Confidence 1 2454333211111 111 121111 1378888877755555443
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.03 E-value=0.32 Score=50.57 Aligned_cols=49 Identities=31% Similarity=0.413 Sum_probs=38.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|++.+++..+..+++.+++++|||-|+-+|+-.+.. .|+ ++|+++++.
T Consensus 109 ~Gf~~~l~~~~~~~~~k~vlvlGaGGaarAi~~~l~~-----~g~------~~i~i~nRt 157 (288)
T PRK12749 109 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR 157 (288)
T ss_pred HHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4567788878888999999999999998777665543 375 689999984
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.02 E-value=2.6 Score=44.63 Aligned_cols=122 Identities=10% Similarity=0.190 Sum_probs=78.6
Q ss_pred cCCCCeeecC-C--cchhHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcChHHHHHHHHHHHHH
Q 008629 265 GTTHLVFNDD-I--QGTASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 322 (559)
Q Consensus 265 r~~~~~FnDD-i--QGTaaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~ 322 (559)
+..+.+.|-- . +..|=-+++.+|+.+|- .|..|.+.+|.|+|.|..|..+|+.+...
T Consensus 90 ~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~vA~~L~~~- 168 (332)
T PRK08605 90 KYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAVAKIFAKG- 168 (332)
T ss_pred HCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHHHHHHHhc-
Confidence 4566666632 1 34455567777765542 24468899999999999999999998533
Q ss_pred HHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHH
Q 008629 323 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 398 (559)
Q Consensus 323 ~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv 398 (559)
.|+ ++|.+|+.. . ... ..++ ....+|.|+++. .|+++=..- ..++|+++.+
T Consensus 169 ---~g~-------~V~~~d~~~----~--~~~----~~~~---~~~~~l~ell~~--aDvIvl~lP~t~~t~~li~~~~l 223 (332)
T PRK08605 169 ---YGS-------DVVAYDPFP----N--AKA----ATYV---DYKDTIEEAVEG--ADIVTLHMPATKYNHYLFNADLF 223 (332)
T ss_pred ---CCC-------EEEEECCCc----c--HhH----Hhhc---cccCCHHHHHHh--CCEEEEeCCCCcchhhhcCHHHH
Confidence 254 688888642 1 001 1111 123579999986 898885421 2357788888
Q ss_pred HHHHcCCCCcEEEecCC
Q 008629 399 EAMASFNEKPLILALSN 415 (559)
Q Consensus 399 ~~Ma~~~erPIIFaLSN 415 (559)
+.|. +..++.=+|.
T Consensus 224 ~~mk---~gailIN~sR 237 (332)
T PRK08605 224 KHFK---KGAVFVNCAR 237 (332)
T ss_pred hcCC---CCcEEEECCC
Confidence 8886 6678776665
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=91.82 E-value=0.38 Score=51.82 Aligned_cols=102 Identities=22% Similarity=0.267 Sum_probs=63.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCC-c-------CCCchhchhhccc--
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR-K-------DSLQHFKKPWAHE-- 364 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R-~-------~~l~~~k~~fA~~-- 364 (559)
.+|++.||+++|+|..|.-++..|+.+ |+ ++|.++|.+=+ ..+. . +++-..|..-+..
T Consensus 37 ~~l~~~~VliiG~GglG~~v~~~La~~-----Gv------g~i~ivD~D~v-e~sNL~RQ~l~~~~diG~~Ka~~~~~~l 104 (370)
T PRK05600 37 ERLHNARVLVIGAGGLGCPAMQSLASA-----GV------GTITLIDDDTV-DVSNIHRQILFGASDVGRPKVEVAAERL 104 (370)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEeCCEE-ccccccccccCChhHCCCHHHHHHHHHH
Confidence 678899999999999999999999764 76 78999999832 2111 0 0111112111110
Q ss_pred ---cCC---------C--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 008629 365 ---HEP---------V--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 412 (559)
Q Consensus 365 ---~~~---------~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 412 (559)
.+. . .++.+.++. .|++|.++... =+.-+|..++.....|.|++
T Consensus 105 ~~~np~v~i~~~~~~i~~~~~~~~~~~--~DlVid~~Dn~--~~r~~in~~~~~~~iP~v~~ 162 (370)
T PRK05600 105 KEIQPDIRVNALRERLTAENAVELLNG--VDLVLDGSDSF--ATKFLVADAAEITGTPLVWG 162 (370)
T ss_pred HHHCCCCeeEEeeeecCHHHHHHHHhC--CCEEEECCCCH--HHHHHHHHHHHHcCCCEEEE
Confidence 010 1 135556654 78888776532 25556677777777888876
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.67 E-value=1.1 Score=47.63 Aligned_cols=107 Identities=21% Similarity=0.287 Sum_probs=68.2
Q ss_pred cccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh-ccccCCCCCHHHH
Q 008629 297 LAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW-AHEHEPVNNLLDA 374 (559)
Q Consensus 297 l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f-A~~~~~~~~L~e~ 374 (559)
++-.||+|.|| |.-|..+|..|+. .|+ ...+.|+|.+ .. +.-.-+|.+....+ -+...+..+..++
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~-----~~~-----~~elvL~Di~-~~-~g~a~Dl~~~~~~~~v~~~td~~~~~~~ 73 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQ-----NPH-----VSELSLYDIV-GA-PGVAADLSHIDTPAKVTGYADGELWEKA 73 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhc-----CCC-----CCEEEEEecC-CC-cccccchhhcCcCceEEEecCCCchHHH
Confidence 34569999999 9999999887752 244 3679999983 21 11111233211110 0111111234778
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++. .|++|=+.+.+.. ..++++++|.+++.+.||+.-|||.
T Consensus 74 l~g--aDvVVitaG~~~~~~~tR~dll~~N~~i~~~i~~~i~~~~~~~iviv~SNPv 128 (321)
T PTZ00325 74 LRG--ADLVLICAGVPRKPGMTRDDLFNTNAPIVRDLVAAVASSAPKAIVGIVSNPV 128 (321)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH
Confidence 886 8988755555322 4568899999999999999999999
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=91.66 E-value=2.8 Score=43.06 Aligned_cols=32 Identities=28% Similarity=0.447 Sum_probs=26.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~-----G~-------~V~l~d~~ 35 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFART-----GY-------DVTIVDVS 35 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhc-----CC-------eEEEEeCC
Confidence 5799999999999999988753 64 58888874
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=91.51 E-value=2.4 Score=47.22 Aligned_cols=123 Identities=16% Similarity=0.218 Sum_probs=68.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh------------chhhccc--c
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF------------KKPWAHE--H 365 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~------------k~~fA~~--~ 365 (559)
.||.|+|+|..|.+||..++.+ |. +++++|.. .+..+.+... +.+++.. .
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~-----G~-------~V~v~D~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i 68 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLA-----GI-------DVAVFDPH----PEAERIIGEVLANAERAYAMLTDAPLPPEGRL 68 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HHHHHHHHHHHHHHHHHHhhhccchhhhhhce
Confidence 4799999999999999998763 64 57788873 1110111100 0001110 1
Q ss_pred CCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEEeeCCC
Q 008629 366 EPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIFASGSP 442 (559)
Q Consensus 366 ~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w--t~G~aifAsGSP 442 (559)
....++.|+++. .|++| .+..... +.+++.+.+.+..+.-.|+..|--. .+ +.+.-+. ..|+++.+ -|
T Consensus 69 ~~~~~~~ea~~~--aD~Vi-eavpe~~~vk~~l~~~l~~~~~~~~iI~SsTsg--i~--~s~l~~~~~~~~r~~~~--hP 139 (495)
T PRK07531 69 TFCASLAEAVAG--ADWIQ-ESVPERLDLKRRVLAEIDAAARPDALIGSSTSG--FL--PSDLQEGMTHPERLFVA--HP 139 (495)
T ss_pred EeeCCHHHHhcC--CCEEE-EcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCC--CC--HHHHHhhcCCcceEEEE--ec
Confidence 123578899986 78888 4544432 4556666666655555666544322 22 3333232 24455544 58
Q ss_pred CCCce
Q 008629 443 FDPFE 447 (559)
Q Consensus 443 F~pv~ 447 (559)
|.|+.
T Consensus 140 ~nP~~ 144 (495)
T PRK07531 140 YNPVY 144 (495)
T ss_pred CCCcc
Confidence 88873
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=91.39 E-value=2 Score=45.91 Aligned_cols=139 Identities=16% Similarity=0.184 Sum_probs=87.1
Q ss_pred cchhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEE
Q 008629 276 QGTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 339 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~l 339 (559)
+.+|--+++.+|+.+|- .+..|.+.++.|+|.|..|..+|+.+... |+ +++.
T Consensus 120 ~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~~~~~l~gktvGIiG~G~IG~~vA~~l~af-----G~-------~V~~ 187 (347)
T PLN02928 120 ASCAEMAIYLMLGLLRKQNEMQISLKARRLGEPIGDTLFGKTVFILGYGAIGIELAKRLRPF-----GV-------KLLA 187 (347)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccCCCCCEEEEECCCHHHHHHHHHHhhC-----CC-------EEEE
Confidence 34566677777776663 24579999999999999999999998643 65 5778
Q ss_pred EcccCccccCCcCCCchhc----hhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 340 VDSKGLIVSSRKDSLQHFK----KPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 340 vD~~GLi~~~R~~~l~~~k----~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
+|+.. .......+. .+ ..+........+|.|+++. .|+++-.- ...+.|+++.+..|. +..+|.
T Consensus 188 ~dr~~--~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~ell~~--aDiVvl~lPlt~~T~~li~~~~l~~Mk---~ga~lI 259 (347)
T PLN02928 188 TRRSW--TSEPEDGLL-IPNGDVDDLVDEKGGHEDIYEFAGE--ADIVVLCCTLTKETAGIVNDEFLSSMK---KGALLV 259 (347)
T ss_pred ECCCC--Chhhhhhhc-cccccccccccccCcccCHHHHHhh--CCEEEECCCCChHhhcccCHHHHhcCC---CCeEEE
Confidence 88741 110000000 00 0111111134589999986 89998652 224799999999996 567777
Q ss_pred ecCCCCCCCCCCHHHHhc--ccCCcEEEe
Q 008629 412 ALSNPTSQSECTAEEAYT--WSKGRAIFA 438 (559)
Q Consensus 412 aLSNPt~~~EctpedA~~--wt~G~aifA 438 (559)
=.|. .++--|+|+- -..|+.-.|
T Consensus 260 NvaR----G~lVde~AL~~AL~~g~i~gA 284 (347)
T PLN02928 260 NIAR----GGLLDYDAVLAALESGHLGGL 284 (347)
T ss_pred ECCC----ccccCHHHHHHHHHcCCeeEE
Confidence 6664 4555554442 135665443
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.32 E-value=1.4 Score=43.93 Aligned_cols=103 Identities=20% Similarity=0.294 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhCC---------CcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC
Q 008629 280 SVVLAGVVAALKLIGG---------TLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 349 (559)
Q Consensus 280 aV~LAgll~Alr~~g~---------~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~ 349 (559)
-+|-.|++-=++..+. +++.++++++|-+. -|.-+|.||.. .| ..++++|++|.....
T Consensus 34 PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~-----~~-------AtVti~~~~~~~~~~ 101 (197)
T cd01079 34 PCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLAN-----DG-------ARVYSVDINGIQVFT 101 (197)
T ss_pred CCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHH-----CC-------CEEEEEecCcccccc
Confidence 4566667776676644 89999999999875 56667666654 35 358899999988866
Q ss_pred CcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCC-CCHHHHH
Q 008629 350 RKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT-FTKEVIE 399 (559)
Q Consensus 350 R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~ 399 (559)
+...+.+.+.+. .....+|.|.+++ +|++|-..+.++. ++.|+|+
T Consensus 102 ~~~~~~hs~t~~---~~~~~~l~~~~~~--ADIVIsAvG~~~~~i~~d~ik 147 (197)
T cd01079 102 RGESIRHEKHHV---TDEEAMTLDCLSQ--SDVVITGVPSPNYKVPTELLK 147 (197)
T ss_pred cccccccccccc---cchhhHHHHHhhh--CCEEEEccCCCCCccCHHHcC
Confidence 643232111100 0111248899986 9999999999997 8999997
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.55 Score=48.59 Aligned_cols=58 Identities=29% Similarity=0.309 Sum_probs=42.1
Q ss_pred CCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 267 THLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 267 ~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+..=+|-| ..|++.+++..+..+++.+++|+|||-+|-+|+..+.. .|. ++|+++|+.
T Consensus 102 ~l~G~NTD--------~~G~~~~l~~~~~~~~~k~vlI~GAGGagrAia~~La~-----~G~------~~V~I~~R~ 159 (289)
T PRK12548 102 KLTGHITD--------GLGFVRNLREHGVDVKGKKLTVIGAGGAATAIQVQCAL-----DGA------KEITIFNIK 159 (289)
T ss_pred EEEEEecC--------HHHHHHHHHhcCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 34556777 45677788877778889999999998776666655543 365 679999874
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=0.44 Score=49.50 Aligned_cols=57 Identities=18% Similarity=0.198 Sum_probs=42.2
Q ss_pred CCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 268 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 268 ~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+=+|-|- .|++.+++..+..+++.+++++|||-||-+|+-.|.+ .|. ++|+++|+.
T Consensus 104 l~G~NTD~--------~Gf~~~L~~~~~~~~~k~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 160 (283)
T PRK14027 104 TTGHNTDV--------SGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD 160 (283)
T ss_pred EEEEcCCH--------HHHHHHHHhcCcCcCCCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEcCC
Confidence 45566664 3566777654556888999999999999888877764 365 689999884
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.08 E-value=0.81 Score=48.34 Aligned_cols=125 Identities=18% Similarity=0.271 Sum_probs=73.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCCHHHHh
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAV 375 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~L~e~V 375 (559)
-.||.|+|||..|.++|.+++. .|+ ..+.|+|.+-=....+.-++.+. ..+... -....++ +++
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~-----~gl------~~i~LvDi~~~~~~~~~ld~~~~-~~~~~~~~~I~~~~d~-~~l 72 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVL-----KNL------GDVVLFDIVKNIPQGKALDISHS-NVIAGSNSKVIGTNNY-EDI 72 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeCCCchhhHHHHHHHhh-hhccCCCeEEEECCCH-HHh
Confidence 3699999999999999987654 376 23999997532211111011111 111111 1112456 566
Q ss_pred cccCCcEEEeccCCCCCC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--Cc
Q 008629 376 KVIKPTILIGSSGVGRTF-------------------TKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GR 434 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~F-------------------t~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~ 434 (559)
+. .|++|=+.+.++.- -.++++.|.+++..-+++--|||.+ .....+++.++ -+
T Consensus 73 ~~--aDiVI~tag~~~~~~~~~~~~~r~~~l~~n~~i~~~i~~~i~~~~p~a~~iv~sNP~d---i~t~~~~~~sg~p~~ 147 (321)
T PTZ00082 73 AG--SDVVIVTAGLTKRPGKSDKEWNRDDLLPLNAKIMDEVAEGIKKYCPNAFVIVITNPLD---VMVKLLQEHSGLPKN 147 (321)
T ss_pred CC--CCEEEECCCCCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHH---HHHHHHHHhcCCChh
Confidence 64 89998666554321 2477888889998879999999982 22333444442 13
Q ss_pred EEEeeCC
Q 008629 435 AIFASGS 441 (559)
Q Consensus 435 aifAsGS 441 (559)
-+|++|+
T Consensus 148 rviGlgt 154 (321)
T PTZ00082 148 KVCGMAG 154 (321)
T ss_pred hEEEecC
Confidence 4666663
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.88 E-value=0.5 Score=49.69 Aligned_cols=126 Identities=14% Similarity=0.265 Sum_probs=75.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-CCCCCHHHHhccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~v 378 (559)
.||.|+|||..|..+|-+|+. .|+ ...|.|+|.+-=..++-.-+|.+.. +|-+.. -..++. +..+.
T Consensus 7 ~ki~iiGaG~vG~~~a~~l~~-----~~~-----~~el~L~D~~~~~~~g~~~Dl~~~~-~~~~~~~i~~~~~-~~~~~- 73 (315)
T PRK00066 7 NKVVLVGDGAVGSSYAYALVN-----QGI-----ADELVIIDINKEKAEGDAMDLSHAV-PFTSPTKIYAGDY-SDCKD- 73 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCCchhHHHHHHHHhhc-cccCCeEEEeCCH-HHhCC-
Confidence 599999999999999988764 366 3679999974111111111133222 221110 011344 44664
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCCC
Q 008629 379 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGSP 442 (559)
Q Consensus 379 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt--~G~aifAsGSP 442 (559)
.|++|=+.+.+.. +=+++++.|.+++...+|+-.|||. ++...-+++++ .-+-+|.+|.-
T Consensus 74 -adivIitag~~~k~g~~R~dll~~N~~i~~~i~~~i~~~~~~~~vivvsNP~---d~~~~~~~k~sg~p~~~viG~gt~ 149 (315)
T PRK00066 74 -ADLVVITAGAPQKPGETRLDLVEKNLKIFKSIVGEVMASGFDGIFLVASNPV---DILTYATWKLSGFPKERVIGSGTS 149 (315)
T ss_pred -CCEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCcH---HHHHHHHHHHhCCCHHHEeecCch
Confidence 8999876665421 1156788888999999999999998 33444555554 22336666543
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=90.80 E-value=0.36 Score=51.72 Aligned_cols=38 Identities=32% Similarity=0.448 Sum_probs=33.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|..|..||..|+.+ |+ ++|.++|.+
T Consensus 131 ~~l~~~~VlvvG~GG~Gs~ia~~La~~-----Gv------g~i~lvD~d 168 (376)
T PRK08762 131 RRLLEARVLLIGAGGLGSPAALYLAAA-----GV------GTLGIVDHD 168 (376)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 367889999999999999999999764 76 789999987
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=2.2 Score=46.39 Aligned_cols=116 Identities=15% Similarity=0.185 Sum_probs=82.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
..|=-+++.+++..|..|..|.+.++.|+|.|..|-.+|+.+... |+ ++..+|.. +.+ ..
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~-----G~-------~V~~~dp~------~~~--~~ 153 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEAL-----GI-------KTLLCDPP------RAD--RG 153 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCc------ccc--cc
Confidence 345567888898888889999999999999999999999998653 75 57778852 111 00
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEe---ccC-----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIG---SSG-----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 428 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG---~S~-----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~ 428 (559)
......+|.|+++. .|+++= ++. .-+.|+++.++.|. +..|+.=.|. -+.-=|+|+
T Consensus 154 -------~~~~~~~L~ell~~--sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk---~gailIN~aR----G~vVDe~AL 217 (378)
T PRK15438 154 -------DEGDFRSLDELVQE--ADILTFHTPLFKDGPYKTLHLADEKLIRSLK---PGAILINACR----GAVVDNTAL 217 (378)
T ss_pred -------cccccCCHHHHHhh--CCEEEEeCCCCCCcccccccccCHHHHhcCC---CCcEEEECCC----chhcCHHHH
Confidence 00123579999875 898872 222 24689999999997 6778886554 555555554
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.58 Score=47.90 Aligned_cols=32 Identities=38% Similarity=0.576 Sum_probs=26.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|+|..|.+||..+... | .+++++|.+
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~-----G-------~~V~~~d~~ 33 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVS-----G-------FQTTLVDIK 33 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhC-----C-------CcEEEEeCC
Confidence 4799999999999999988753 5 358888874
|
|
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.32 E-value=0.39 Score=51.10 Aligned_cols=39 Identities=26% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
.+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+=
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~a-----Gv------g~i~lvD~D~ 58 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRA-----GI------GKLTIADRDY 58 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCCc
Confidence 478899999999999999999999875 76 7899999983
|
|
| >PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.61 Score=50.45 Aligned_cols=38 Identities=24% Similarity=0.344 Sum_probs=33.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++|++.||+++|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 38 ~~L~~~~VlviG~GGlGs~va~~La~~-----Gv------g~i~lvD~D 75 (392)
T PRK07878 38 KRLKNARVLVIGAGGLGSPTLLYLAAA-----GV------GTLGIVEFD 75 (392)
T ss_pred HHHhcCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCC
Confidence 568899999999999999999999864 87 789999987
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.3 Score=46.67 Aligned_cols=126 Identities=21% Similarity=0.339 Sum_probs=75.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc---CCCCCHHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDA 374 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~---~~~~~L~e~ 374 (559)
+..||.|+|||+.|.++|.+++. .|+ ..+.|+|.+-=......-++.+. ..+.... ....+++ +
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~-----~~~------~~l~L~Di~~~~~~g~~lDl~~~-~~~~~~~~~i~~~~d~~-~ 70 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQ-----KNL------GDVVLYDVIKGVPQGKALDLKHF-STLVGSNINILGTNNYE-D 70 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHH-----CCC------CeEEEEECCCccchhHHHHHhhh-ccccCCCeEEEeCCCHH-H
Confidence 34599999999999999987764 365 24999997521111110012211 1111110 1124565 5
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 438 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifA 438 (559)
++. .|++|=+.+.+.. +=+++.+.|.++|+.-+++=.|||.. .....++++++ =.-+|+
T Consensus 71 l~~--ADiVVitag~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvsNP~d---i~t~~~~~~s~~p~~rviG 145 (319)
T PTZ00117 71 IKD--SDVVVITAGVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVTNPLD---CMVKVFQEKSGIPSNKICG 145 (319)
T ss_pred hCC--CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecChHH---HHHHHHHHhhCCCcccEEE
Confidence 665 8988876655431 23488999999999998888899982 23445555542 134676
Q ss_pred eCC
Q 008629 439 SGS 441 (559)
Q Consensus 439 sGS 441 (559)
+|+
T Consensus 146 ~gt 148 (319)
T PTZ00117 146 MAG 148 (319)
T ss_pred ecc
Confidence 664
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.09 E-value=1.7 Score=45.89 Aligned_cols=93 Identities=14% Similarity=0.282 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.=++-.|.+++..+|+|+|.| ..|..+|.+|... |. .+++++++ .
T Consensus 138 ~~PcTp~aii~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~-----ga-------tVtv~~~~-------t----- 193 (301)
T PRK14194 138 LTPCTPSGCLRLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQA-----HC-------SVTVVHSR-------S----- 193 (301)
T ss_pred CCCCcHHHHHHHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHC-----CC-------EEEEECCC-------C-----
Confidence 3466788889999999999999999999996 9999999999763 53 46666543 0
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.++.|++++ .|++|=+.+.++.+++++++ +.-||.=+|
T Consensus 194 ------------~~l~e~~~~--ADIVIsavg~~~~v~~~~ik------~GaiVIDvg 231 (301)
T PRK14194 194 ------------TDAKALCRQ--ADIVVAAVGRPRLIDADWLK------PGAVVIDVG 231 (301)
T ss_pred ------------CCHHHHHhc--CCEEEEecCChhcccHhhcc------CCcEEEEec
Confidence 168888986 99999999988888988854 556776666
|
|
| >cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4 | Back alignment and domain information |
|---|
Probab=90.07 E-value=0.62 Score=51.17 Aligned_cols=125 Identities=19% Similarity=0.294 Sum_probs=73.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhc-CCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCC-----CCCHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQT-KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 372 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~-G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 372 (559)
.||+|+||||+ -.-.|+..+.+.. .++ .+.|||+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGgGS~---~tp~li~~l~~~~~~l~----~~ei~L~Did----~~Rl~~v~~l~~~~~~~~g~~~~v~~ttD~~ 69 (425)
T cd05197 1 VKIAIIGGGSS---FTPELVSGLLKTPEELP----ISEVTLYDID----EERLDIILTIAKRYVEEVGADIKFEKTMDLE 69 (425)
T ss_pred CEEEEECCchH---hHHHHHHHHHcChhhCC----CCEEEEEcCC----HHHHHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 38999999996 3434444443322 342 4789999975 44422122222223222 112 25788
Q ss_pred HHhcccCCcEEEeccCC--------------------------CCCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGV--------------------------GRTFT--------KEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~--------------------------~g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
||++. +|.+|-.-.+ ||.|. .++++.|.++|+.-+|+-.|||.
T Consensus 70 ~Al~g--ADfVi~~irvGg~~~r~~De~Iplk~G~~gqeT~G~GG~~~alrni~ii~~i~~~i~~~~P~a~lin~TNP~- 146 (425)
T cd05197 70 DAIID--ADFVINQFRVGGLTYREKDEQIPLKYGVIGQETVGPGGTFSGLRQIPYVLDIARKXEKLSPDAWYLNFTNPA- 146 (425)
T ss_pred HHhCC--CCEEEEeeecCChHHHHHHHhHHHHcCcccccccCcchhhhhhhhHHHHHHHHHHHHHhCCCcEEEecCChH-
Confidence 88886 7776644333 34333 38899999999999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 008629 419 QSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 419 ~~EctpedA~~wt~G~aifAsG 440 (559)
.-+| +-+++++...-+|.+|
T Consensus 147 -di~t-~a~~~~~p~~rviG~c 166 (425)
T cd05197 147 -GEVT-EAVRRYVPPEKAVGLC 166 (425)
T ss_pred -HHHH-HHHHHhCCCCcEEEEC
Confidence 2222 2333445333355444
|
Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in |
| >PRK15076 alpha-galactosidase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.7 Score=50.83 Aligned_cols=129 Identities=16% Similarity=0.197 Sum_probs=72.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC---CC-chhchhhccc--cCCCCCHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD---SL-QHFKKPWAHE--HEPVNNLLD 373 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~---~l-~~~k~~fA~~--~~~~~~L~e 373 (559)
.||.|+|||+.|. +..++..+....++ +-..++|+|.+- +|.+ .+ .......... -.-..++.+
T Consensus 2 ~KIaIIGaGsvg~--~~~~~~~i~~~~~l----~~~evvLvDid~----er~~~~~~l~~~~~~~~~~~~~i~~ttD~~e 71 (431)
T PRK15076 2 PKITFIGAGSTVF--TKNLLGDILSVPAL----RDAEIALMDIDP----ERLEESEIVARKLAESLGASAKITATTDRRE 71 (431)
T ss_pred cEEEEECCCHHHh--HHHHHHHHhhCccC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEECCHHH
Confidence 5899999999853 33343333221234 235799999752 2211 01 1110011000 011247888
Q ss_pred HhcccCCcEEEeccCCCCCC-------------------------------------CHHHHHHHHcCCCCcEEEecCCC
Q 008629 374 AVKVIKPTILIGSSGVGRTF-------------------------------------TKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~F-------------------------------------t~evv~~Ma~~~erPIIFaLSNP 416 (559)
+++. .|++|=..++||.- =.++++.|.++|+..+|+-.|||
T Consensus 72 al~d--ADfVv~ti~vg~~~~~~~~De~Iplk~G~~~~r~et~G~GG~~~~~r~i~~i~~i~~~i~~~~p~a~iin~tNP 149 (431)
T PRK15076 72 ALQG--ADYVINAIQVGGYEPCTVTDFEIPKKYGLRQTIGDTLGIGGIMRALRTIPVLLDICEDMEEVCPDALLLNYVNP 149 (431)
T ss_pred HhCC--CCEEeEeeeeCCcchhhhhhhhhHHHcCCeeecccCcCccchhhhhhhHHHHHHHHHHHHHHCCCeEEEEcCCh
Confidence 8876 78777555554311 14778888899999999999999
Q ss_pred CCCCCCCHHHHhcccCCcEEEeeC-CCCC
Q 008629 417 TSQSECTAEEAYTWSKGRAIFASG-SPFD 444 (559)
Q Consensus 417 t~~~EctpedA~~wt~G~aifAsG-SPF~ 444 (559)
.. +-.+-++.++ ..-+|.+| +|+.
T Consensus 150 ~d---ivt~~~~~~~-~~rviG~c~~~~~ 174 (431)
T PRK15076 150 MA---MNTWAMNRYP-GIKTVGLCHSVQG 174 (431)
T ss_pred HH---HHHHHHhcCC-CCCEEEECCCHHH
Confidence 82 1122223453 34577777 6643
|
|
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.3 Score=46.68 Aligned_cols=115 Identities=15% Similarity=0.148 Sum_probs=66.9
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 364 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~ 364 (559)
|.+++...... ...+++|+|+|..|..++..+... .++ ++++++++. ..| ...+...+.+.
T Consensus 117 ~~laa~~la~~--~~~~v~iiGaG~qA~~~~~al~~~----~~i------~~v~V~~R~----~~~---a~~~a~~~~~~ 177 (326)
T TIGR02992 117 GAVAARHLARE--DSSVVAIFGAGMQARLQLEALTLV----RDI------RSARIWARD----SAK---AEALALQLSSL 177 (326)
T ss_pred HHHHHHHhCCC--CCcEEEEECCCHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHhh
Confidence 44444444322 346899999999998888877543 254 678888773 222 22222222111
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHH
Q 008629 365 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEE 426 (559)
Q Consensus 365 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~Ectped 426 (559)
.....++.++++. .|++|-++.. ...|+.++++ +.-.|.++..-+ .+-|+.++-
T Consensus 178 ~g~~v~~~~~~~~av~~--aDiVvtaT~s~~p~i~~~~l~------~g~~i~~vg~~~p~~rEld~~~ 237 (326)
T TIGR02992 178 LGIDVTAATDPRAAMSG--ADIIVTTTPSETPILHAEWLE------PGQHVTAMGSDAEHKNEIDPAV 237 (326)
T ss_pred cCceEEEeCCHHHHhcc--CCEEEEecCCCCcEecHHHcC------CCcEEEeeCCCCCCceecCHHH
Confidence 1123678999975 9999977643 2356766665 222444554322 256777755
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.02 E-value=1.2 Score=46.77 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=67.8
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsA-giGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.-++-.|.+++..+++++|.|.- |.-+|.+|.. .|. .+.+++++
T Consensus 137 ~~PcTp~aii~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVt~~hs~------------- 191 (285)
T PRK14189 137 FRPCTPYGVMKMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQ-----AGA-------TVTICHSK------------- 191 (285)
T ss_pred CcCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEecCC-------------
Confidence 346788889999999999999999999999998 9999999864 253 35555432
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.|+.++++
T Consensus 192 -----------t~~l~~~~~~--ADIVV~avG~~~~i~~~~ik 221 (285)
T PRK14189 192 -----------TRDLAAHTRQ--ADIVVAAVGKRNVLTADMVK 221 (285)
T ss_pred -----------CCCHHHHhhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788885 99999999999999998886
|
|
| >PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.52 Score=42.85 Aligned_cols=35 Identities=37% Similarity=0.575 Sum_probs=30.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++.||+++|+|+-|.-+|+.|+.. |+ ++|.++|.+
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~-----Gv------~~i~lvD~d 35 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARS-----GV------GKITLVDDD 35 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHH-----TT------SEEEEEESS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHh-----CC------CceeecCCc
Confidence 478999999999999999999875 76 789999997
|
Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A .... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.88 Score=49.76 Aligned_cols=126 Identities=17% Similarity=0.237 Sum_probs=71.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc------CCCCCHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH------EPVNNLLDA 374 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~------~~~~~L~e~ 374 (559)
||.|+|||+.|.+.+- +..+.....+ +-..++|+|.+- +|.+.+...-..++... ....++.++
T Consensus 2 KIaIIGaGs~G~a~a~--~~~i~~~~~~----~g~eV~L~Did~----e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~ea 71 (423)
T cd05297 2 KIAFIGAGSVVFTKNL--VGDLLKTPEL----SGSTIALMDIDE----ERLETVEILAKKIVEELGAPLKIEATTDRREA 71 (423)
T ss_pred eEEEECCChHHhHHHH--HHHHhcCCCC----CCCEEEEECCCH----HHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 7999999999887653 1111111111 235799999752 22111111111111111 113578899
Q ss_pred hcccCCcEEEeccCCC---------------CCCC---------------------HHHHHHHHcCCCCcEEEecCCCCC
Q 008629 375 VKVIKPTILIGSSGVG---------------RTFT---------------------KEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~---------------g~Ft---------------------~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++. .|++|=.-..+ |+|. .++.+.|.++|++.+++=.|||.
T Consensus 72 l~~--AD~Vi~ai~~~~~~~~~~de~i~~K~g~~~~~~~t~g~ggi~~~~~s~~~i~~ia~~i~~~~p~a~~i~~tNPv- 148 (423)
T cd05297 72 LDG--ADFVINTIQVGGHEYTETDFEIPEKYGYYQTVGDTSGPGGIFRALRTIPVLLDIARDIEELCPDAWLLNYANPM- 148 (423)
T ss_pred hcC--CCEEEEeeEecCccchhhhhhhHHHcCeeeeccCCCcHHHHHHHHhhHHHHHHHHHHHHHHCCCCEEEEcCChH-
Confidence 885 88777544322 1221 27777778888999999999998
Q ss_pred CCCCCHHHHhcccCCcEEEeeC-CC
Q 008629 419 QSECTAEEAYTWSKGRAIFASG-SP 442 (559)
Q Consensus 419 ~~EctpedA~~wt~G~aifAsG-SP 442 (559)
..+| +-+++.++ .-++.+| +|
T Consensus 149 -~i~t-~~~~k~~~-~rviG~c~~~ 170 (423)
T cd05297 149 -AELT-WALNRYTP-IKTVGLCHGV 170 (423)
T ss_pred -HHHH-HHHHHhCC-CCEEEECCcH
Confidence 3222 23346665 4567777 44
|
linked to 3D####ucture |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.92 E-value=0.72 Score=47.33 Aligned_cols=87 Identities=23% Similarity=0.344 Sum_probs=53.5
Q ss_pred HHHHHHHHH-hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 284 AGVVAALKL-IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 284 Agll~Alr~-~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
.|++++++. .+..+++.+++++|+|.+|-+++..+.. .|+ ++++++++. .++ .......+.
T Consensus 107 ~G~~~~l~~~~~~~~~~k~vlVlGaGg~a~ai~~aL~~-----~g~------~~V~v~~R~----~~~---a~~l~~~~~ 168 (278)
T PRK00258 107 IGFVRALEERLGVDLKGKRILILGAGGAARAVILPLLD-----LGV------AEITIVNRT----VER---AEELAKLFG 168 (278)
T ss_pred HHHHHHHHhccCCCCCCCEEEEEcCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 356667764 5678999999999999888888877764 364 579999885 122 222222221
Q ss_pred ccc-CCC-CCHHHHhcccCCcEEEeccCCC
Q 008629 363 HEH-EPV-NNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 363 ~~~-~~~-~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
... -.. .++.+.+. +.|++|-++..+
T Consensus 169 ~~~~~~~~~~~~~~~~--~~DivInaTp~g 196 (278)
T PRK00258 169 ALGKAELDLELQEELA--DFDLIINATSAG 196 (278)
T ss_pred hccceeecccchhccc--cCCEEEECCcCC
Confidence 110 011 12334454 489999888755
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=2.5 Score=43.85 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=26.5
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..||.|+|+|..|.++|..+... | .+++++|+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~-----G-------~~V~~~~r~ 36 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASAN-----G-------HRVRVWSRR 36 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHC-----C-------CEEEEEeCC
Confidence 35899999999999999999764 5 357777764
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.72 E-value=1.1 Score=46.08 Aligned_cols=32 Identities=34% Similarity=0.626 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~-----g~-------~V~~~d~~ 36 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARK-----GL-------QVVLIDVM 36 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999988653 53 58888863
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.68 E-value=1.5 Score=46.02 Aligned_cols=84 Identities=17% Similarity=0.287 Sum_probs=68.8
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++..++-.+.+|+..+++++|.|. -|--+|.+|.. .|. .+.+++++
T Consensus 143 ~~PcTp~av~~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~-----~~a-------tVtv~hs~------------- 197 (287)
T PRK14176 143 LVPCTPHGVIRALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLN-----RNA-------TVSVCHVF------------- 197 (287)
T ss_pred CCCCcHHHHHHHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHH-----CCC-------EEEEEecc-------------
Confidence 45678899999999999999999999999998 89999988864 243 45666642
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 198 -----------T~~l~~~~~~--ADIvv~AvG~p~~i~~~~vk 227 (287)
T PRK14176 198 -----------TDDLKKYTLD--ADILVVATGVKHLIKADMVK 227 (287)
T ss_pred -----------CCCHHHHHhh--CCEEEEccCCccccCHHHcC
Confidence 1257777875 99999999999999999886
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.56 E-value=8.2 Score=42.59 Aligned_cols=174 Identities=24% Similarity=0.251 Sum_probs=115.8
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCc--HHHHHHHHcCC-----CCee----------ecCCcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGTT-----HLVF----------NDDIQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~--Af~lL~ryr~~-----~~~F----------nDDiQGTaaV~LAgll 287 (559)
|-..+...|++++.+.-||+.-|-=+|++..- =--+.+.|+.- .++| .+----||==+.-+.-
T Consensus 116 E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~dey~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~ 195 (411)
T COG0334 116 ELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDEYSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIR 195 (411)
T ss_pred HHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHhhhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHH
Confidence 67788899999999999999999999998632 11256777531 2222 1122223322222333
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh-----hc
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-----WA 362 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~-----fA 362 (559)
.|++..|..|+..||.|-|-|.+|.-.|+.+.+. |. |=+-+-|++|-|++.. .|+..+.. +.
T Consensus 196 ~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~-----GA------kvva~sds~g~i~~~~--Gld~~~l~~~~~~~~ 262 (411)
T COG0334 196 EALKALGDDLEGARVAVQGFGNVGQYAAEKLHEL-----GA------KVVAVSDSKGGIYDED--GLDVEALLELKERRG 262 (411)
T ss_pred HHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHc-----CC------EEEEEEcCCCceecCC--CCCHHHHHHHhhhhh
Confidence 7888888889999999999999999998888653 63 5677789999888763 45532222 11
Q ss_pred cc-----cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 363 HE-----HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 363 ~~-----~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
+- .+.+.+ |.+-.+..||||=+.. ++..|++-.+.+.. + +|.=-+| |++
T Consensus 263 ~v~~~~ga~~i~~--~e~~~~~cDIl~PcA~-~n~I~~~na~~l~a---k-~V~EgAN~P~t 317 (411)
T COG0334 263 SVAEYAGAEYITN--EELLEVDCDILIPCAL-ENVITEDNADQLKA---K-IVVEGANGPTT 317 (411)
T ss_pred hHHhhcCceEccc--cccccccCcEEccccc-ccccchhhHHHhhh---c-EEEeccCCCCC
Confidence 10 111112 3344457899996665 56899998888863 2 8888888 774
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=89.48 E-value=1.2 Score=42.72 Aligned_cols=115 Identities=13% Similarity=0.090 Sum_probs=73.5
Q ss_pred HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCC
Q 008629 290 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 369 (559)
Q Consensus 290 lr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~ 369 (559)
....+..|.++++.|+|.|..|..+|+++... |+ +++.+|+..--. + .+....-...
T Consensus 27 ~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~f-----G~-------~V~~~d~~~~~~--------~---~~~~~~~~~~ 83 (178)
T PF02826_consen 27 ERFPGRELRGKTVGIIGYGRIGRAVARRLKAF-----GM-------RVIGYDRSPKPE--------E---GADEFGVEYV 83 (178)
T ss_dssp TTTTBS-STTSEEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSCHHH--------H---HHHHTTEEES
T ss_pred cCCCccccCCCEEEEEEEcCCcCeEeeeeecC-----Cc-------eeEEecccCChh--------h---hcccccceee
Confidence 45667889999999999999999999999753 64 688888752210 0 1111111235
Q ss_pred CHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEE
Q 008629 370 NLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAI 436 (559)
Q Consensus 370 ~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w--t~G~ai 436 (559)
+|.|.++. .|+++=.-- .-+.|+++.++.|. +.-++.-.|. .++--|+|+-. .+|+.-
T Consensus 84 ~l~ell~~--aDiv~~~~plt~~T~~li~~~~l~~mk---~ga~lvN~aR----G~~vde~aL~~aL~~g~i~ 147 (178)
T PF02826_consen 84 SLDELLAQ--ADIVSLHLPLTPETRGLINAEFLAKMK---PGAVLVNVAR----GELVDEDALLDALESGKIA 147 (178)
T ss_dssp SHHHHHHH---SEEEE-SSSSTTTTTSBSHHHHHTST---TTEEEEESSS----GGGB-HHHHHHHHHTTSEE
T ss_pred ehhhhcch--hhhhhhhhccccccceeeeeeeeeccc---cceEEEeccc----hhhhhhhHHHHHHhhccCc
Confidence 79999986 888874421 24799999999997 5667775554 55555554422 356554
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=89.48 E-value=2.1 Score=48.64 Aligned_cols=163 Identities=22% Similarity=0.233 Sum_probs=105.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
..+--++|+|.|..|+|||.-+.. .|+ ++.|++++-+- |.+|..+|-+--.+|+... +.+=..|+
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~-----RGl-------~v~LvE~~D~AsGTSsrstkLiHGGlRYl~~~-e~~lvrEa 76 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAG-----RGL-------KVALVEKGDLASGTSSRSTKLIHGGLRYLEQY-EFSLVREA 76 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHh-----CCC-------eEEEEecCcccCcccCccccCccchhhhhhhc-chHHHHHH
Confidence 355679999999999999998865 487 57889988775 4555555665556666431 22213455
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCC--CCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCee
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFN--EKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 452 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~--erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~ 452 (559)
+.. .+++..+|-|+ +.|.+||..+=+
T Consensus 77 l~E-----------------r~vL~~~APH~v~p~~~~lp~~~~~----------------------------------- 104 (532)
T COG0578 77 LAE-----------------REVLLRIAPHLVEPLPFLLPHLPGL----------------------------------- 104 (532)
T ss_pred HHH-----------------HHHHHHhCccccccCcCeEeccCCc-----------------------------------
Confidence 542 47777787665 444566554420
Q ss_pred eCccCccccccchhhHHHHHHhCC-ccc--CHHHHHHHHHHHHhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHH
Q 008629 453 FVPGQANNAYIFPGFGLGLVISGA-IRV--HDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYE 529 (559)
Q Consensus 453 ~~p~Q~NN~yiFPGlglG~l~~~a-~~I--td~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~ 529 (559)
---.+++.|+.+...+++. +.. +..+..+++..+.-.+.++.+..+..||.-.- .+ .+...++++.|.+
T Consensus 105 -----~~~~~~~~gl~lyd~lag~~~~~p~~~~~~~~~~~~~~P~l~~~~l~ga~~y~D~~v-dd--aRLv~~~a~~A~~ 176 (532)
T COG0578 105 -----RDAWLIRAGLFLYDHLAGIRKLLPASRVLDPKEALPLEPALKKDGLKGAFRYPDGVV-DD--ARLVAANARDAAE 176 (532)
T ss_pred -----ccchHHHHHHHHHHHhhcccccCCcceecchhhhhhcCcccchhhccceEEEcccee-ch--HHHHHHHHHHHHh
Confidence 0125778899999999993 222 22233335666666666666666888987653 32 2566788888888
Q ss_pred hCC
Q 008629 530 LGV 532 (559)
Q Consensus 530 ~Gv 532 (559)
.|-
T Consensus 177 ~Ga 179 (532)
T COG0578 177 HGA 179 (532)
T ss_pred ccc
Confidence 883
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=89.32 E-value=0.56 Score=44.02 Aligned_cols=85 Identities=21% Similarity=0.336 Sum_probs=50.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch--hhccc---cCC---CCCHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK--PWAHE---HEP---VNNLL 372 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~--~fA~~---~~~---~~~L~ 372 (559)
||.|+|||+.|+.+|..+.. .| .++.|.+++.-..+ .++..+. .|... ... ..+|.
T Consensus 1 KI~ViGaG~~G~AlA~~la~-----~g-------~~V~l~~~~~~~~~----~i~~~~~n~~~~~~~~l~~~i~~t~dl~ 64 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLAD-----NG-------HEVTLWGRDEEQIE----EINETRQNPKYLPGIKLPENIKATTDLE 64 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHH-----CT-------EEEEEETSCHHHHH----HHHHHTSETTTSTTSBEETTEEEESSHH
T ss_pred CEEEECcCHHHHHHHHHHHH-----cC-------CEEEEEeccHHHHH----HHHHhCCCCCCCCCcccCcccccccCHH
Confidence 78999999999999998876 35 56777776531111 1211111 11110 111 25799
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC
Q 008629 373 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN 405 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~ 405 (559)
++++. +|++| +.. |-.+-+++++.++.+-
T Consensus 65 ~a~~~--ad~Ii-iav-Ps~~~~~~~~~l~~~l 93 (157)
T PF01210_consen 65 EALED--ADIII-IAV-PSQAHREVLEQLAPYL 93 (157)
T ss_dssp HHHTT---SEEE-E-S--GGGHHHHHHHHTTTS
T ss_pred HHhCc--ccEEE-ecc-cHHHHHHHHHHHhhcc
Confidence 99986 77665 333 3245789999998744
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.1 Score=46.84 Aligned_cols=85 Identities=21% Similarity=0.370 Sum_probs=68.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.=++-.+.+|+..+++++|-+ .-|--+|.++.. .| ..+..++++
T Consensus 130 ~~~PcTp~av~~ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~-----~~-------atVtv~hs~------------ 185 (279)
T PRK14178 130 GFAPCTPNGIMTLLHEYKISIAGKRAVVVGRSIDVGRPMAALLLN-----AD-------ATVTICHSK------------ 185 (279)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCccccHHHHHHHHh-----CC-------CeeEEEecC------------
Confidence 34567888899999999999999999999999 788888777754 24 345666543
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.++. +|++|+.-+.++.+|+++|+
T Consensus 186 ------------t~~L~~~~~~--ADIvI~Avgk~~lv~~~~vk 215 (279)
T PRK14178 186 ------------TENLKAELRQ--ADILVSAAGKAGFITPDMVK 215 (279)
T ss_pred ------------hhHHHHHHhh--CCEEEECCCcccccCHHHcC
Confidence 0368888986 99999999999999999984
|
|
| >PRK14851 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=1.4 Score=51.36 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=78.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC--Cc-----CCCchhchhhccc---
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS--RK-----DSLQHFKKPWAHE--- 364 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~--R~-----~~l~~~k~~fA~~--- 364 (559)
++|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|-+=+-..+ |. +++-..|..-+.+
T Consensus 39 ~kL~~~~VlIvG~GGlGs~va~~Lar~-----GV------G~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~Kv~v~~~~l~ 107 (679)
T PRK14851 39 ERLAEAKVAIPGMGGVGGVHLITMVRT-----GI------GRFHIADFDQFEPVNVNRQFGARVPSFGRPKLAVMKEQAL 107 (679)
T ss_pred HHHhcCeEEEECcCHHHHHHHHHHHHh-----CC------CeEEEEcCCEecccccccCcCcChhhCCCHHHHHHHHHHH
Confidence 578899999999999999999988875 87 789999987332211 10 1121122222211
Q ss_pred --c---------CCC--CCHHHHhcccCCcEEEeccCCCCCC-CHHHHHHHHcCCCCcEEEecC----------CCCCCC
Q 008629 365 --H---------EPV--NNLLDAVKVIKPTILIGSSGVGRTF-TKEVIEAMASFNEKPLILALS----------NPTSQS 420 (559)
Q Consensus 365 --~---------~~~--~~L~e~V~~vkPtvLIG~S~~~g~F-t~evv~~Ma~~~erPIIFaLS----------NPt~~~ 420 (559)
. ..+ .++.+.++. .|++|-+..-. .| ++..|...+..+..|+|++-. +|.
T Consensus 108 ~inP~~~I~~~~~~i~~~n~~~~l~~--~DvVid~~D~~-~~~~r~~l~~~c~~~~iP~i~~g~~G~~g~~~~~~p~--- 181 (679)
T PRK14851 108 SINPFLEITPFPAGINADNMDAFLDG--VDVVLDGLDFF-QFEIRRTLFNMAREKGIPVITAGPLGYSSAMLVFTPQ--- 181 (679)
T ss_pred HhCCCCeEEEEecCCChHHHHHHHhC--CCEEEECCCCC-cHHHHHHHHHHHHHCCCCEEEeecccccceEEEEcCC---
Confidence 0 111 246677764 89998555321 12 344677778888999998754 665
Q ss_pred CCCHHHHhcccCC
Q 008629 421 ECTAEEAYTWSKG 433 (559)
Q Consensus 421 EctpedA~~wt~G 433 (559)
....++.|.+.++
T Consensus 182 ~~~~~~~~~~~~~ 194 (679)
T PRK14851 182 GMGFDDYFNIGGK 194 (679)
T ss_pred CCCHhHhccCCCC
Confidence 5778888888777
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=89.22 E-value=0.5 Score=50.30 Aligned_cols=38 Identities=34% Similarity=0.534 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ .+|.++|.+
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRA-----GV------GKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 568899999999999999999988764 76 789999996
|
|
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.88 Score=47.59 Aligned_cols=48 Identities=38% Similarity=0.513 Sum_probs=38.5
Q ss_pred HHHHHHHHhC--CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 285 GVVAALKLIG--GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 285 gll~Alr~~g--~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
|+..+++-.+ ...+.+++|++|||-|+.+|+-.|.+. |. ++|+++++.
T Consensus 110 G~~~~L~~~~~~~~~~~~~vlilGAGGAarAv~~aL~~~-----g~------~~i~V~NRt 159 (283)
T COG0169 110 GFLRALKEFGLPVDVTGKRVLILGAGGAARAVAFALAEA-----GA------KRITVVNRT 159 (283)
T ss_pred HHHHHHHhcCCCcccCCCEEEEECCcHHHHHHHHHHHHc-----CC------CEEEEEeCC
Confidence 5677777755 456689999999999999998888763 75 789999883
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.83 E-value=1.8 Score=45.79 Aligned_cols=110 Identities=21% Similarity=0.162 Sum_probs=68.7
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc--cccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL--IVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL--i~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
||.|.|| |..|..+|-.|+. .|+-.|+-...+.|+|.+.- ..+...-+|.+..-++.+...-..+..+.++.
T Consensus 2 KV~IiGAaG~VG~~~a~~L~~-----~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~ 76 (323)
T cd00704 2 HVLITGAAGQIGYNLLFLIAS-----GELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKD 76 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHh-----CCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCC
Confidence 7999999 9999999987764 36532223346999998641 11111112333322332211111457788886
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- .-+++++.|.+++ +.-||+-.|||-
T Consensus 77 --aDiVVitAG~~~~~g~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 129 (323)
T cd00704 77 --VDVAILVGAFPRKPGMERADLLRKNAKIFKEQGEALNKVAKPTVKVLVVGNPA 129 (323)
T ss_pred --CCEEEEeCCCCCCcCCcHHHHHHHhHHHHHHHHHHHHHhCCCCeEEEEeCCcH
Confidence 88888555543 31 1257788888995 999999999998
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.55 E-value=3.3 Score=44.07 Aligned_cols=111 Identities=23% Similarity=0.188 Sum_probs=74.1
Q ss_pred CCCeeecCCc---chhHHHHHHHHHHHH------------------HhCCCcccceEEEeCcChHHHHHHHHHHHHHHHh
Q 008629 267 THLVFNDDIQ---GTASVVLAGVVAALK------------------LIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 325 (559)
Q Consensus 267 ~~~~FnDDiQ---GTaaV~LAgll~Alr------------------~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~ 325 (559)
-+.|+|-.-- ..|=-+++.+|+..| ..|..|.++++.|+|.|..|..+|+.+...
T Consensus 89 gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~~l~af---- 164 (324)
T COG0111 89 GILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAF---- 164 (324)
T ss_pred CCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHHHHHhC----
Confidence 3444444432 234446777777777 567789999999999999999999998764
Q ss_pred cCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHH
Q 008629 326 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 401 (559)
Q Consensus 326 ~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~M 401 (559)
|+ ++..+|+. ..+. .... .......+|.+.++. .|+|.-.- ..-|.++.+-+..|
T Consensus 165 -gm-------~v~~~d~~----~~~~--~~~~-----~~~~~~~~Ld~lL~~--sDiv~lh~PlT~eT~g~i~~~~~a~M 223 (324)
T COG0111 165 -GM-------KVIGYDPY----SPRE--RAGV-----DGVVGVDSLDELLAE--ADILTLHLPLTPETRGLINAEELAKM 223 (324)
T ss_pred -CC-------eEEEECCC----Cchh--hhcc-----ccceecccHHHHHhh--CCEEEEcCCCCcchhcccCHHHHhhC
Confidence 66 57788873 1110 0100 111223679999986 89888542 22378999999999
Q ss_pred H
Q 008629 402 A 402 (559)
Q Consensus 402 a 402 (559)
.
T Consensus 224 K 224 (324)
T COG0111 224 K 224 (324)
T ss_pred C
Confidence 5
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=88.32 E-value=0.79 Score=45.15 Aligned_cols=109 Identities=16% Similarity=0.285 Sum_probs=68.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-CC-----CCCHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EP-----VNNLLDA 374 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~-----~~~L~e~ 374 (559)
||+|+||||+-. ..++...+.+...++ .+.|+|+|.+ ..|-+.....-+.+++.. .+ ..++.||
T Consensus 1 KI~iIGaGS~~~--~~~l~~~l~~~~~l~----~~ei~L~Did----~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eA 70 (183)
T PF02056_consen 1 KITIIGAGSTYF--PLLLLGDLLRTEELS----GSEIVLMDID----EERLEIVERLARRMVEEAGADLKVEATTDRREA 70 (183)
T ss_dssp EEEEETTTSCCH--HHHHHHHHHCTTTST----EEEEEEE-SC----HHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHH
T ss_pred CEEEECCchHhh--HHHHHHHHhcCccCC----CcEEEEEcCC----HHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHH
Confidence 799999999964 455555554444553 4689999986 333111122223333321 12 2589999
Q ss_pred hcccCCcEEEeccCCC----------------------------CCCC--------HHHHHHHHcCCCCcEEEecCCCCC
Q 008629 375 VKVIKPTILIGSSGVG----------------------------RTFT--------KEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~----------------------------g~Ft--------~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++. +|.+|=.-.+| |.|. .|+.+.|.++|+.--||=.+||.
T Consensus 71 l~g--ADfVi~~irvGg~~~r~~De~Ip~k~Gi~~~~~eT~G~GG~~~alRtipv~~~ia~~i~~~~PdAw~iNytNP~- 147 (183)
T PF02056_consen 71 LEG--ADFVINQIRVGGLEAREIDEEIPLKYGIVGTIQETVGPGGFFRALRTIPVMLDIARDIEELCPDAWLINYTNPM- 147 (183)
T ss_dssp HTT--ESEEEE---TTHHHHHHHHHHTGGCCTTT-BTTSSSTHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEE-SSSH-
T ss_pred hCC--CCEEEEEeeecchHHHHHHHHHHHHhCCccccccccCccHHHHHHhhHHHHHHHHHHHHHhCCCcEEEeccChH-
Confidence 996 88887544433 2221 58899999999999999999998
Q ss_pred CCCCC
Q 008629 419 QSECT 423 (559)
Q Consensus 419 ~~Ect 423 (559)
+++|
T Consensus 148 -~~vt 151 (183)
T PF02056_consen 148 -GIVT 151 (183)
T ss_dssp -HHHH
T ss_pred -HHHH
Confidence 5555
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=88.20 E-value=1.1 Score=46.16 Aligned_cols=120 Identities=21% Similarity=0.357 Sum_probs=71.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----cc-----CCCCC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EH-----EPVNN 370 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~----~~-----~~~~~ 370 (559)
.||.|+|||..|.++|..+.. .|+ . .++++|.+ .++ +......+.+ .. ....+
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~-----~~~-----~-ev~L~D~~----~~~---~~~~~~dl~~~~~~~~~~~~i~~~~d 64 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLAL-----KEL-----G-DVVLFDIV----EGV---PQGKALDIAEAAPVEGFDTKITGTND 64 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----e-EEEEEECC----Cch---hHHHHHHHHhhhhhcCCCcEEEeCCC
Confidence 489999999999999998764 254 2 79999983 211 1111111111 00 01234
Q ss_pred HHHHhcccCCcEEEeccCCC---C-----------CCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCC---
Q 008629 371 LLDAVKVIKPTILIGSSGVG---R-----------TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKG--- 433 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~~---g-----------~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G--- 433 (559)
. ++++. .|++|=+.+.+ | -.-+++++.|.+++...+++-.|||. .....-+++++ |
T Consensus 65 ~-~~~~~--aDiVii~~~~p~~~~~~r~~~~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~---d~~~~~~~~~s-~~~~ 137 (307)
T PRK06223 65 Y-EDIAG--SDVVVITAGVPRKPGMSRDDLLGINAKIMKDVAEGIKKYAPDAIVIVVTNPV---DAMTYVALKES-GFPK 137 (307)
T ss_pred H-HHHCC--CCEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHh-CCCc
Confidence 5 44654 89888443333 2 12356777888899999888889998 12222334444 3
Q ss_pred cEEEeeCCCCC
Q 008629 434 RAIFASGSPFD 444 (559)
Q Consensus 434 ~aifAsGSPF~ 444 (559)
+-+|++|+-.+
T Consensus 138 ~~viG~gt~ld 148 (307)
T PRK06223 138 NRVIGMAGVLD 148 (307)
T ss_pred ccEEEeCCCcH
Confidence 45888885443
|
|
| >cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases | Back alignment and domain information |
|---|
Probab=87.33 E-value=1.1 Score=49.55 Aligned_cols=130 Identities=16% Similarity=0.245 Sum_probs=75.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHh-cCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCC-----CCCHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQ-TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEP-----VNNLL 372 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~-~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~-----~~~L~ 372 (559)
.||+|+||||+ -+-.|+..+.+. ..++ -..|+|+|-+ .+|-+.+...-+.+++. ..+ ..++.
T Consensus 1 ~KI~iIGaGS~---~tp~li~~l~~~~~~l~----~~ei~L~DId----~~rl~~v~~l~~~~~~~~g~~~~v~~Ttdr~ 69 (437)
T cd05298 1 FKIVIAGGGST---YTPGIVKSLLDRKEDFP----LRELVLYDID----AERQEKVAEAVKILFKENYPEIKFVYTTDPE 69 (437)
T ss_pred CeEEEECCcHH---HHHHHHHHHHhCcccCC----CCEEEEECCC----HHHHHHHHHHHHHHHHhhCCCeEEEEECCHH
Confidence 48999999996 444444544432 2342 3789999986 33322122222223222 111 24788
Q ss_pred HHhcccCCcEEEeccCC--------------------------CCC--------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGV--------------------------GRT--------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~--------------------------~g~--------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
||++. +|.+|=.-.+ ||. .-.++++.|.++|+.-+++-.|||.
T Consensus 70 eAl~g--ADfVi~~irvGg~~~r~~De~Ip~kyGi~gqET~G~GG~~~alRtip~~~~i~~~i~~~~pda~lin~tNP~- 146 (437)
T cd05298 70 EAFTD--ADFVFAQIRVGGYAMREQDEKIPLKHGVVGQETCGPGGFAYGLRSIGPMIELIDDIEKYSPDAWILNYSNPA- 146 (437)
T ss_pred HHhCC--CCEEEEEeeeCCchHHHHHHhHHHHcCcceecCccHHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEecCcH-
Confidence 88886 7766633222 232 2257888999999999999999999
Q ss_pred CCCCCHHHHhcccCCcEEEeeCCCCC
Q 008629 419 QSECTAEEAYTWSKGRAIFASGSPFD 444 (559)
Q Consensus 419 ~~EctpedA~~wt~G~aifAsGSPF~ 444 (559)
..+|-.---.++.-|+|=-+-+|+.
T Consensus 147 -~~vt~~~~~~~~~~kviGlC~~~~~ 171 (437)
T cd05298 147 -AIVAEALRRLFPNARILNICDMPIA 171 (437)
T ss_pred -HHHHHHHHHHCCCCCEEEECCcHHH
Confidence 4444322111334455544555543
|
Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas |
| >TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit | Back alignment and domain information |
|---|
Probab=87.04 E-value=1.9 Score=47.91 Aligned_cols=93 Identities=15% Similarity=0.089 Sum_probs=63.3
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcC-CCC--eeecCCcchhHHHHHHHHHHHHHh--------
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLI-------- 293 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alr~~-------- 293 (559)
-|-..+-+.+..+.... |+ |..|=+....-.++.++|.- ..| ++|++..+.|....+-+++.++..
T Consensus 130 p~Cp~~v~~~~~~a~~~-p~--i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 206 (515)
T TIGR03140 130 QNCPDVVQALNQMALLN-PN--ISHTMIDGALFQDEVEALGIQGVPAVFLNGEEFHNGRMDLAELLEKLEETAGVEAASA 206 (515)
T ss_pred CCCHHHHHHHHHHHHhC-CC--ceEEEEEchhCHHHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhhccCcccchh
Confidence 34444444444444444 54 33444666677788999974 455 468888888888888888877654
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIAL 320 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~ 320 (559)
...-.+.++||+|||+||+..|..+..
T Consensus 207 ~~~~~~~dVvIIGgGpAGl~AA~~la~ 233 (515)
T TIGR03140 207 LEQLDPYDVLVVGGGPAGAAAAIYAAR 233 (515)
T ss_pred ccccCCCCEEEECCCHHHHHHHHHHHH
Confidence 122445789999999999999887765
|
This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP. |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=86.61 E-value=2.4 Score=41.78 Aligned_cols=96 Identities=16% Similarity=0.170 Sum_probs=59.1
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc---cc-c----CCCCCH
Q 008629 301 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA---HE-H----EPVNNL 371 (559)
Q Consensus 301 riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA---~~-~----~~~~~L 371 (559)
||.|+| +|..|..+|..+.+. | .+++++|+. .++ +......+. .. . -...+.
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-----G-------~~V~v~~r~----~~~---~~~l~~~~~~~~~~~g~~~~~~~~~~ 62 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-----G-------NKIIIGSRD----LEK---AEEAAAKALEELGHGGSDIKVTGADN 62 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-----C-------CEEEEEEcC----HHH---HHHHHHHHHhhccccCCCceEEEeCh
Confidence 799997 899999999998753 4 467777663 111 221111111 00 0 011356
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 419 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 419 (559)
.++++. +|++| ++..+ ...+++++.++..-...+|+.++||...
T Consensus 63 ~ea~~~--aDvVi-lavp~-~~~~~~l~~l~~~l~~~vvI~~~ngi~~ 106 (219)
T TIGR01915 63 AEAAKR--ADVVI-LAVPW-DHVLKTLESLRDELSGKLVISPVVPLAS 106 (219)
T ss_pred HHHHhc--CCEEE-EECCH-HHHHHHHHHHHHhccCCEEEEeccCcee
Confidence 778775 78776 44434 3457888888654344799999999854
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=2.6 Score=44.20 Aligned_cols=85 Identities=19% Similarity=0.230 Sum_probs=67.8
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.=++-.+.+|+..++|++|-+ ..|.-+|.+|.. .|. .+.+++++ .
T Consensus 135 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~-----~~A-------tVti~hs~-------T---- 191 (281)
T PRK14183 135 GFVPCTPLGVMELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLN-----ANA-------TVDICHIF-------T---- 191 (281)
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 34567888899999999999999999999998 889999988864 243 24444432 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 192 -------------~~l~~~~~~--ADIvV~AvGkp~~i~~~~vk 220 (281)
T PRK14183 192 -------------KDLKAHTKK--ADIVIVGVGKPNLITEDMVK 220 (281)
T ss_pred -------------cCHHHHHhh--CCEEEEecCcccccCHHHcC
Confidence 246777885 99999999999999999997
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=86.50 E-value=2 Score=46.05 Aligned_cols=38 Identities=21% Similarity=0.337 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+|+|+|..|.-+|..|+.+ |+ ++|.++|.+
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~-----Gv------g~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGA-----GV------GHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467889999999999999999988764 87 789999998
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.24 E-value=1.6 Score=45.25 Aligned_cols=56 Identities=13% Similarity=0.108 Sum_probs=40.2
Q ss_pred CCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 268 HLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 268 ~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..=+|-|. .|++.+++..|.+. +.+++++|||-|+-+|+-.|.+ .|. ++|+++++.
T Consensus 100 l~G~NTD~--------~Gf~~~L~~~~~~~-~~~vlilGaGGaarAi~~aL~~-----~g~------~~i~i~nR~ 155 (272)
T PRK12550 100 LKAYNTDY--------IAIAKLLASYQVPP-DLVVALRGSGGMAKAVAAALRD-----AGF------TDGTIVARN 155 (272)
T ss_pred EEEEecCH--------HHHHHHHHhcCCCC-CCeEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 44556663 35567777666653 4699999999999888877754 365 679999884
|
|
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.12 E-value=5.1 Score=42.44 Aligned_cols=122 Identities=20% Similarity=0.206 Sum_probs=71.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
-||+|.|| |.-|..++..|+. .|+--.+....++++|.+.-. .++..-++.+..-++..+.....++.++++
T Consensus 3 ~kV~I~GAaG~VG~~la~~L~~-----~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~ 77 (325)
T cd01336 3 IRVLVTGAAGQIAYSLLPMIAK-----GDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFK 77 (325)
T ss_pred eEEEEECCCCHHHHHHHHHHHh-----CcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhC
Confidence 37999999 9999999988765 244100111379999985311 011000122111122111111257888888
Q ss_pred ccCCcEEEeccCCCCC--CC------------HHHHHHHHcCC-CCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 377 VIKPTILIGSSGVGRT--FT------------KEVIEAMASFN-EKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~--Ft------------~evv~~Ma~~~-erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
. +|++|=+.+.+.. .| +++++.|.+++ ..-||+-.|||. ....--+++++
T Consensus 78 ~--aDiVI~tAG~~~~~~~~R~~l~~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv---D~~t~~~~k~~ 142 (325)
T cd01336 78 D--VDVAILVGAMPRKEGMERKDLLKANVKIFKEQGEALDKYAKKNVKVLVVGNPA---NTNALILLKYA 142 (325)
T ss_pred C--CCEEEEeCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEecCcH---HHHHHHHHHHc
Confidence 5 9998866665421 23 56778888886 689999999997 33344444443
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=86.06 E-value=0.25 Score=46.86 Aligned_cols=89 Identities=25% Similarity=0.409 Sum_probs=49.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-------------CccccCCcCCCchhchhhcc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-------------GLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-------------GLi~~~R~~~l~~~k~~fA~ 363 (559)
+...+|||.|+|.+|.|.++++... |. ++...|.. ++.+ .+.+.+.. +.|++
T Consensus 18 ~~p~~vvv~G~G~vg~gA~~~~~~l-----Ga-------~v~~~d~~~~~~~~~~~~~~~~i~~-~~~~~~~~--~~~~~ 82 (168)
T PF01262_consen 18 VPPAKVVVTGAGRVGQGAAEIAKGL-----GA-------EVVVPDERPERLRQLESLGAYFIEV-DYEDHLER--KDFDK 82 (168)
T ss_dssp E-T-EEEEESTSHHHHHHHHHHHHT-----T--------EEEEEESSHHHHHHHHHTTTEESEE-TTTTTTTS--B-CCH
T ss_pred CCCeEEEEECCCHHHHHHHHHHhHC-----CC-------EEEeccCCHHHHHhhhcccCceEEE-cccccccc--cccch
Confidence 5668999999999999999998763 53 24444442 0101 00000000 00222
Q ss_pred c----cCC--CCCHHHHhcccCCcEEEecc-----CCCCCCCHHHHHHHH
Q 008629 364 E----HEP--VNNLLDAVKVIKPTILIGSS-----GVGRTFTKEVIEAMA 402 (559)
Q Consensus 364 ~----~~~--~~~L~e~V~~vkPtvLIG~S-----~~~g~Ft~evv~~Ma 402 (559)
. ... ...|.+.++. .|++|+.. ..|-+||++.++.|.
T Consensus 83 ~~~~~~~~~~~~~f~~~i~~--~d~vI~~~~~~~~~~P~lvt~~~~~~m~ 130 (168)
T PF01262_consen 83 ADYYEHPESYESNFAEFIAP--ADIVIGNGLYWGKRAPRLVTEEMVKSMK 130 (168)
T ss_dssp HHCHHHCCHHHHHHHHHHHH---SEEEEHHHBTTSS---SBEHHHHHTSS
T ss_pred hhhhHHHHHhHHHHHHHHhh--CcEEeeecccCCCCCCEEEEhHHhhccC
Confidence 1 011 1358888875 79999743 345689999999996
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=86.05 E-value=0.8 Score=45.56 Aligned_cols=38 Identities=29% Similarity=0.340 Sum_probs=33.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|..|..||..|+.+ |+ .+|+++|.+
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARS-----GV------GNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 467899999999999999999999763 76 789999997
|
|
| >PRK07411 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=86.01 E-value=1.9 Score=46.71 Aligned_cols=38 Identities=24% Similarity=0.342 Sum_probs=34.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 34 ~~L~~~~VlivG~GGlG~~va~~La~~-----Gv------g~l~lvD~D 71 (390)
T PRK07411 34 KRLKAASVLCIGTGGLGSPLLLYLAAA-----GI------GRIGIVDFD 71 (390)
T ss_pred HHHhcCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 568899999999999999999999875 87 789999987
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=86.00 E-value=2.6 Score=44.60 Aligned_cols=102 Identities=25% Similarity=0.333 Sum_probs=67.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccC--CCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~--~~~~L~e~V~~ 377 (559)
||.|+|| |..|..+|-.|+. .|+ ...+.|+|.+ + .++-.-+|.+.. .+.+-.. ...++.+.++.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~-----~~~-----~~elvLiDi~-~-a~g~alDL~~~~-~~~~i~~~~~~~~~y~~~~d 68 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKL-----NPL-----VSELALYDIV-N-TPGVAADLSHIN-TPAKVTGYLGPEELKKALKG 68 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEEecC-c-cceeehHhHhCC-CcceEEEecCCCchHHhcCC
Confidence 8999999 9999999887743 366 3679999998 3 222111244332 1111111 11346677776
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 69 --aDivvitaG~~~k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 120 (310)
T cd01337 69 --ADVVVIPAGVPRKPGMTRDDLFNINAGIVRDLATAVAKACPKALILIISNPV 120 (310)
T ss_pred --CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEccCch
Confidence 89888565553 21 2246777888899999999999998
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=85.89 E-value=2.3 Score=43.97 Aligned_cols=99 Identities=15% Similarity=0.208 Sum_probs=62.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc-C
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI-K 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v-k 379 (559)
||-|+|.|..|..+|..|.+. | .++.++|+. .+ ..+..+..- .....++.|.++.. +
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-----g-------~~V~~~dr~----~~---~~~~l~~~g---~~~~~s~~~~~~~~~~ 59 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-----G-------HDCVGYDHD----QD---AVKAMKEDR---TTGVANLRELSQRLSA 59 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-----C-------CEEEEEECC----HH---HHHHHHHcC---CcccCCHHHHHhhcCC
Confidence 699999999999999988752 5 356667663 11 122222111 11224666666532 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCCCCCCCHH
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTSQSECTAE 425 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~~~Ectpe 425 (559)
||++|= +...+ ..+++++.+..+ .+..||+-+||.. ++-+-+
T Consensus 60 ~dvIi~-~vp~~-~~~~v~~~l~~~l~~g~ivid~st~~--~~~t~~ 102 (298)
T TIGR00872 60 PRVVWV-MVPHG-IVDAVLEELAPTLEKGDIVIDGGNSY--YKDSLR 102 (298)
T ss_pred CCEEEE-EcCch-HHHHHHHHHHhhCCCCCEEEECCCCC--cccHHH
Confidence 888874 44444 789999888765 3568999999865 454444
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=8.6 Score=42.07 Aligned_cols=176 Identities=17% Similarity=0.162 Sum_probs=97.5
Q ss_pred cccCcchHHHHHhcCCCCCeeEE-EEecCceecccCCCCCccccc-------hhHHHHHHhHhcCCCCCc----chhHhH
Q 008629 163 SLKEKGKILEVLKNWPERSIQVI-VVTDGERILGLGDLGCQGMGI-------PVGKLALYTALGGIRPSA----EYAELL 230 (559)
Q Consensus 163 s~~d~g~i~~~l~nwp~~~v~vi-VVTDG~rILGLGDlG~~GmgI-------~iGKl~LY~a~gGI~P~~----~y~~~v 230 (559)
+..|...+.++|+.. ++++. +++| +.+..+--.+.+-.-+ ..++. | ..+ |+.... -=.+-.
T Consensus 176 ~~~d~~el~~lL~~~---Gi~v~~~lp~-~~~~d~~~~~~~~~~~~~~~~~~~~A~~-L-~~~-GiP~~~~~~P~G~~~T 248 (427)
T PRK02842 176 ADVVEDQLTLEFKKL---GIGVVGFLPA-RRFTELPAIGPGTVVALAQPFLSDTARA-L-RER-GAKVLTAPFPLGPEGT 248 (427)
T ss_pred CcchHHHHHHHHHHc---CCeeEEEeCC-ccHHHHhhcCcCcEEEEeCHHHHHHHHH-H-HHc-CCccccCCCCcChHHH
Confidence 344545677888765 46664 7787 5566555554332111 12222 2 556 665543 224557
Q ss_pred HHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChH
Q 008629 231 DEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEA 310 (559)
Q Consensus 231 defv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsA 310 (559)
++|+.++.+.+|- |. +.+-+.+++.+ +-+..++.-....|+..|++|+|-+.-
T Consensus 249 ~~~L~~la~~~g~-------~~--~~~~~~~~~er------------------~~~~~~l~~~~~~l~Gkrvai~g~~~~ 301 (427)
T PRK02842 249 RAWLEAAAAAFGI-------DP--DGLEEREAPAW------------------ERARKALEPYRELLRGKRVFFLPDSQL 301 (427)
T ss_pred HHHHHHHHHHhCc-------CH--hHHHHHHHHHH------------------HHHHHHHHHhhhhcCCcEEEEECCchh
Confidence 8888888888863 11 11222333333 233455555666788889999999888
Q ss_pred HHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-----ccCCCCCHHHHhcccCCcEEEe
Q 008629 311 GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----EHEPVNNLLDAVKVIKPTILIG 385 (559)
Q Consensus 311 giGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-----~~~~~~~L~e~V~~vkPtvLIG 385 (559)
.+++++.|.+. .|+.. ..+-+. +.++ +.+.+..+.+.. +..+...+.+.|+..|||.|||
T Consensus 302 ~~~la~~L~ee----lGm~~-------v~v~t~---~~~~-~~~~~~~~~l~~~~~v~~~~D~~~l~~~i~~~~pDllig 366 (427)
T PRK02842 302 EIPLARFLSRE----CGMEL-------VEVGTP---YLNR-RFLAAELALLPDGVRIVEGQDVERQLDRIRALRPDLVVC 366 (427)
T ss_pred HHHHHHHHHHh----CCCEE-------EEeCCC---CCCH-HHHHHHHHhccCCCEEEECCCHHHHHHHHHHcCCCEEEc
Confidence 99999998763 37632 111110 0111 101111111111 1122234688999999999999
Q ss_pred cc
Q 008629 386 SS 387 (559)
Q Consensus 386 ~S 387 (559)
-|
T Consensus 367 ~~ 368 (427)
T PRK02842 367 GL 368 (427)
T ss_pred cC
Confidence 76
|
|
| >PRK08374 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.62 E-value=4.2 Score=43.28 Aligned_cols=105 Identities=18% Similarity=0.241 Sum_probs=63.7
Q ss_pred ceEEEeCcChHHHHHHHHHHH---HHHHhcCCChhhhcccEEEEcccCccccCCcCCCc---hhchhhcccc------C-
Q 008629 300 HRFLFLGAGEAGTGIAELIAL---EISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---HFKKPWAHEH------E- 366 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~---~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~---~~k~~fA~~~------~- 366 (559)
.+|.++|.|..|.+++++|.+ .+.++.|+. -+=+-+.|++|-+...++-++. .+++.+.... .
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~----l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~~~~~~~~~~ 78 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVE----LKVVSITDTSGTIWLPEDIDLREAKEVKENFGKLSNWGNDYEV 78 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCC----EEEEEEEeCCccccCCCCCChHHHHHhhhccCchhhccccccc
Confidence 589999999999999999977 333334532 1224567999888765531122 2222222100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 367 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 367 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
...++.|.++...+||+|-+++.. ..-+-+.+.+. +.+++|.
T Consensus 79 ~~~~~~ell~~~~~DVvVd~t~~~-~a~~~~~~al~--~G~~VVt 120 (336)
T PRK08374 79 YNFSPEEIVEEIDADIVVDVTNDK-NAHEWHLEALK--EGKSVVT 120 (336)
T ss_pred cCCCHHHHHhcCCCCEEEECCCcH-HHHHHHHHHHh--hCCcEEE
Confidence 012688888777899999999633 33333333343 4677875
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.58 E-value=4.6 Score=42.47 Aligned_cols=93 Identities=23% Similarity=0.375 Sum_probs=71.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-+|++.=++-.|.+++..+++|+|. |..|.-+|.+|... |. .+.++.+ +.
T Consensus 137 ~~PcTp~avi~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~-----ga-------tVtv~~s-------~t----- 192 (284)
T PRK14179 137 MIPCTPAGIMEMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDK-----NA-------TVTLTHS-------RT----- 192 (284)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHC-----CC-------EEEEECC-------CC-----
Confidence 356778888999999999999999999999 99999999999763 54 3444422 11
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.+|.+.+++ +|++|-..+.++.+++++++ +..+|.=.+
T Consensus 193 ------------~~l~~~~~~--ADIVI~avg~~~~v~~~~ik------~GavVIDvg 230 (284)
T PRK14179 193 ------------RNLAEVARK--ADILVVAIGRGHFVTKEFVK------EGAVVIDVG 230 (284)
T ss_pred ------------CCHHHHHhh--CCEEEEecCccccCCHHHcc------CCcEEEEec
Confidence 268888986 99999999999999998854 444554443
|
|
| >cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1 | Back alignment and domain information |
|---|
Probab=85.56 E-value=0.82 Score=44.93 Aligned_cols=76 Identities=16% Similarity=0.318 Sum_probs=52.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCC-CCC
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEP-VNN 370 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~-~~~ 370 (559)
++|++.||+|+|+|.-|.-+|+.|+.+ |+ ++|.++|.+- |..+ +|.. +.|... ..+ ...
T Consensus 17 ~~L~~s~VlIiG~gglG~evak~La~~-----GV------g~i~lvD~d~-ve~s---nL~r--qfl~~~~diG~~Ka~a 79 (197)
T cd01492 17 KRLRSARILLIGLKGLGAEIAKNLVLS-----GI------GSLTILDDRT-VTEE---DLGA--QFLIPAEDLGQNRAEA 79 (197)
T ss_pred HHHHhCcEEEEcCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-ccHh---hCCC--CccccHHHcCchHHHH
Confidence 568899999999999999999999774 87 7899999983 2221 2432 122221 111 135
Q ss_pred HHHHhcccCCcEEEecc
Q 008629 371 LLDAVKVIKPTILIGSS 387 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S 387 (559)
+.+.++...|++-|=..
T Consensus 80 ~~~~L~~lNp~v~i~~~ 96 (197)
T cd01492 80 SLERLRALNPRVKVSVD 96 (197)
T ss_pred HHHHHHHHCCCCEEEEE
Confidence 77888899999877544
|
Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.36 E-value=3.1 Score=43.68 Aligned_cols=85 Identities=20% Similarity=0.311 Sum_probs=66.9
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.-++-.|.+++..+++++|.+. .|.-+|.||.. .|. .+.+++++
T Consensus 136 ~~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~-----~~a-------tVt~chs~------------ 191 (284)
T PRK14190 136 TFLPCTPHGILELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLN-----ENA-------TVTYCHSK------------ 191 (284)
T ss_pred CCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHH-----CCC-------EEEEEeCC------------
Confidence 345678889999999999999999999999764 67777777754 242 35566432
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
..+|.+.+++ +|++|...+.++.|++++|+
T Consensus 192 ------------t~~l~~~~~~--ADIvI~AvG~p~~i~~~~ik 221 (284)
T PRK14190 192 ------------TKNLAELTKQ--ADILIVAVGKPKLITADMVK 221 (284)
T ss_pred ------------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1368888986 99999999999999999996
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=85.35 E-value=4.1 Score=39.26 Aligned_cols=85 Identities=19% Similarity=0.325 Sum_probs=58.2
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+.--+|-.|++.-++..+.+++..+++++|.+. -|.-++.||.. .|. .+.+++++
T Consensus 14 ~~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~-----~~a-------tVt~~h~~------------ 69 (160)
T PF02882_consen 14 GFVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLN-----KGA-------TVTICHSK------------ 69 (160)
T ss_dssp SS--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHH-----TT--------EEEEE-TT------------
T ss_pred CCcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHh-----CCC-------eEEeccCC------------
Confidence 334678889999999999999999999999985 88888877765 243 24445443
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.++. +|++|-..++++.++.++||
T Consensus 70 ------------T~~l~~~~~~--ADIVVsa~G~~~~i~~~~ik 99 (160)
T PF02882_consen 70 ------------TKNLQEITRR--ADIVVSAVGKPNLIKADWIK 99 (160)
T ss_dssp ------------SSSHHHHHTT--SSEEEE-SSSTT-B-GGGS-
T ss_pred ------------CCcccceeee--ccEEeeeecccccccccccc
Confidence 1357777875 99999999999999999886
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=85.28 E-value=1 Score=44.97 Aligned_cols=104 Identities=23% Similarity=0.304 Sum_probs=60.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CC-CCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP-VNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~-~~~L 371 (559)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+ .+..+ +|+.+- -|..+. .. ...+
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~-----Gv------g~i~lvD~D-~ve~s---NL~Rq~-l~~~~diG~~Ka~~~ 80 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAA-----GV------GKLGLVDDD-VVELS---NLQRQI-LHTEADVGQPKAEAA 80 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC-EEcCc---cccccc-ccChhhCCChHHHHH
Confidence 468899999999999999999999774 76 789999998 23322 344221 121111 11 1246
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.+.++...|++=|=... .-++++-+...-+.. .=||-++-||.
T Consensus 81 ~~~l~~~np~~~i~~~~--~~i~~~~~~~~~~~~-DvVi~~~d~~~ 123 (228)
T cd00757 81 AERLRAINPDVEIEAYN--ERLDAENAEELIAGY-DLVLDCTDNFA 123 (228)
T ss_pred HHHHHHhCCCCEEEEec--ceeCHHHHHHHHhCC-CEEEEcCCCHH
Confidence 67777777775443222 234554444332211 22333556665
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=85.22 E-value=1.7 Score=48.99 Aligned_cols=101 Identities=18% Similarity=0.222 Sum_probs=57.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch------------hchhhccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------------FKKPWAHE 364 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~------------~k~~fA~~ 364 (559)
....|++|+|+|.+|+..+..+... |. ++.++|.+.-.. .+.+.+.. ...-||+.
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~l-----GA-------~V~v~d~~~~rl-e~a~~lGa~~v~v~~~e~g~~~~gYa~~ 228 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSL-----GA-------IVRAFDTRPEVK-EQVQSMGAEFLELDFKEEGGSGDGYAKV 228 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHH-HHHHHcCCeEEeccccccccccccceee
Confidence 4568999999999999987777552 52 377777764211 00000100 00112221
Q ss_pred cCCC------CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCC
Q 008629 365 HEPV------NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 365 ~~~~------~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
..+. .-+.+.++. .|++|++.-.+| +.|++.++.|.. .-+|.=||-
T Consensus 229 ~s~~~~~~~~~~~~e~~~~--~DIVI~TalipG~~aP~Lit~emv~~MKp---GsvIVDlA~ 285 (511)
T TIGR00561 229 MSEEFIAAEMELFAAQAKE--VDIIITTALIPGKPAPKLITEEMVDSMKA---GSVIVDLAA 285 (511)
T ss_pred cCHHHHHHHHHHHHHHhCC--CCEEEECcccCCCCCCeeehHHHHhhCCC---CCEEEEeee
Confidence 1100 114555654 999999994443 589999999973 334444443
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=8.1 Score=42.17 Aligned_cols=142 Identities=13% Similarity=0.134 Sum_probs=84.0
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+...- . + . .+.+ ......+|.|
T Consensus 187 ~~~L~gktVGIvG~G~IG~~vA~~l~~f-----G~-------~V~~~dr~~~~---~-~-~---~~~~--g~~~~~~l~e 244 (385)
T PRK07574 187 SYDLEGMTVGIVGAGRIGLAVLRRLKPF-----DV-------KLHYTDRHRLP---E-E-V---EQEL--GLTYHVSFDS 244 (385)
T ss_pred ceecCCCEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEECCCCCc---h-h-h---Hhhc--CceecCCHHH
Confidence 3468899999999999999999998753 65 57788875320 0 0 1 0011 0111257999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEeeCCCCCCce
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFASGSPFDPFE 447 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~--wt~G~aifAsGSPF~pv~ 447 (559)
+++. .|+++=.-- .-++|+++.+..|. +..++.=.|. .++.-++|+. ...|+.-.|..-=|.+--
T Consensus 245 ll~~--aDvV~l~lPlt~~T~~li~~~~l~~mk---~ga~lIN~aR----G~iVDe~AL~~AL~sG~i~GAaLDV~~~EP 315 (385)
T PRK07574 245 LVSV--CDVVTIHCPLHPETEHLFDADVLSRMK---RGSYLVNTAR----GKIVDRDAVVRALESGHLAGYAGDVWFPQP 315 (385)
T ss_pred Hhhc--CCEEEEcCCCCHHHHHHhCHHHHhcCC---CCcEEEECCC----CchhhHHHHHHHHHhCCccEEEEecCCCCC
Confidence 9986 898874321 13689999999996 5667776655 5555555442 235665545432221110
Q ss_pred e-CCeeeCccCccccccchhhH
Q 008629 448 Y-NGKVFVPGQANNAYIFPGFG 468 (559)
Q Consensus 448 ~-~G~~~~p~Q~NN~yiFPGlg 468 (559)
. ....+ -+..|+.+-|=++
T Consensus 316 lp~d~pL--~~~pNvilTPHia 335 (385)
T PRK07574 316 APADHPW--RTMPRNGMTPHIS 335 (385)
T ss_pred CCCCChH--HhCCCeEECCccc
Confidence 0 00000 1334777777665
|
|
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=85.08 E-value=2.1 Score=44.79 Aligned_cols=124 Identities=19% Similarity=0.290 Sum_probs=71.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-c--cCCCCCHHHHhc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-E--HEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~--~~~~~~L~e~V~ 376 (559)
.||.|+|+|..|.++|-.++. .|+ + ++.++|..--+.+++.-++.+ ...+.. . -....++.+ ++
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~-----~g~----~--~VvlvDi~~~l~~g~a~d~~~-~~~~~~~~~~i~~t~d~~~-~~ 68 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAE-----KEL----A--DLVLLDVVEGIPQGKALDMYE-ASPVGGFDTKVTGTNNYAD-TA 68 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHH-----cCC----C--eEEEEeCCCChhHHHHHhhhh-hhhccCCCcEEEecCCHHH-hC
Confidence 389999999999999998765 254 2 499999832221111000110 000000 0 011246766 55
Q ss_pred ccCCcEEEeccCCC---C-C------CC----HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEeeC
Q 008629 377 VIKPTILIGSSGVG---R-T------FT----KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFASG 440 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g-~------Ft----~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifAsG 440 (559)
. .|++|=+.+.+ | . ++ +++++.|.+++...+|+-.|||. .+...-++++++ -+-+|++|
T Consensus 69 ~--aDiVIitag~p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tNP~---di~t~~~~~~sg~~~~rviG~g 143 (305)
T TIGR01763 69 N--SDIVVITAGLPRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSNPL---DAMTYVAWQKSGFPKERVIGQA 143 (305)
T ss_pred C--CCEEEEcCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHHCcCHHHEEEec
Confidence 4 78877554433 1 1 23 45666688899999999999998 344444555531 12366776
Q ss_pred C
Q 008629 441 S 441 (559)
Q Consensus 441 S 441 (559)
.
T Consensus 144 ~ 144 (305)
T TIGR01763 144 G 144 (305)
T ss_pred c
Confidence 4
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=85.07 E-value=2.8 Score=44.05 Aligned_cols=88 Identities=17% Similarity=0.259 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-+|++.=++-.|.+++..++|++|.+. .|.-+|.||...-. ..| ..+..++++
T Consensus 136 ~~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~-~~~-------AtVt~~hs~------------- 194 (286)
T PRK14184 136 FRPCTPAGVMTLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGK-FAN-------ATVTVCHSR------------- 194 (286)
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcc-cCC-------CEEEEEeCC-------------
Confidence 35678889999999999999999999999764 57777777653100 012 235555542
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
..+|.+.++. +|++|+..+.++.|++++|+
T Consensus 195 -----------t~~l~~~~~~--ADIVI~AvG~p~li~~~~vk 224 (286)
T PRK14184 195 -----------TPDLAEECRE--ADFLFVAIGRPRFVTADMVK 224 (286)
T ss_pred -----------chhHHHHHHh--CCEEEEecCCCCcCCHHHcC
Confidence 1358888986 99999999999999999994
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=6 Score=41.51 Aligned_cols=83 Identities=19% Similarity=0.326 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-+|++.=++-.+.+|+.++++++|-+. .|.-+|.||.. .|. .+.+++|+
T Consensus 138 ~PcTp~av~~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~-----~~A-------tVt~chs~-------------- 191 (278)
T PRK14172 138 LPCTPNSVITLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLN-----ENA-------TVTICHSK-------------- 191 (278)
T ss_pred cCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC--------------
Confidence 5678888999999999999999999999764 67788877754 243 35666542
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 ----------T~~l~~~~~~--ADIvIsAvGkp~~i~~~~ik 221 (278)
T PRK14172 192 ----------TKNLKEVCKK--ADILVVAIGRPKFIDEEYVK 221 (278)
T ss_pred ----------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357788886 99999999999999999997
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.86 E-value=3.2 Score=41.69 Aligned_cols=120 Identities=11% Similarity=0.160 Sum_probs=69.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||.|+|+|..|..+|..+... |. ...+++++|+.. +..+..+..| ...-..+..++++.
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-----g~----~~~~v~v~~r~~-------~~~~~~~~~~--g~~~~~~~~~~~~~-- 62 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLAS-----GV----PAKDIIVSDPSP-------EKRAALAEEY--GVRAATDNQEAAQE-- 62 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhC-----CC----CcceEEEEcCCH-------HHHHHHHHhc--CCeecCChHHHHhc--
Confidence 4799999999999999888653 43 124677777641 1122222222 01112467777764
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCce
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFE 447 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~ 447 (559)
+|++| ++..+ ...+++++.+..+. ..+|..++|-++ .++.-+|....+=+...-|..|..
T Consensus 63 advVi-l~v~~-~~~~~v~~~l~~~~-~~~vvs~~~gi~-----~~~l~~~~~~~~~iv~~~P~~p~~ 122 (267)
T PRK11880 63 ADVVV-LAVKP-QVMEEVLSELKGQL-DKLVVSIAAGVT-----LARLERLLGADLPVVRAMPNTPAL 122 (267)
T ss_pred CCEEE-EEcCH-HHHHHHHHHHHhhc-CCEEEEecCCCC-----HHHHHHhcCCCCcEEEecCCchHH
Confidence 77776 44433 45788888887654 458889999773 344445543222222345555543
|
|
| >PRK15317 alkyl hydroperoxide reductase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=2.6 Score=46.87 Aligned_cols=85 Identities=16% Similarity=0.160 Sum_probs=62.8
Q ss_pred eeeccCCCCcHHHHHHHHcC-CCC--eeecCCcchhHHHHHHHHHHHHHhC--------CCcccceEEEeCcChHHHHHH
Q 008629 247 IQFEDFANHNAFELLAKYGT-THL--VFNDDIQGTASVVLAGVVAALKLIG--------GTLAEHRFLFLGAGEAGTGIA 315 (559)
Q Consensus 247 Iq~EDf~~~~Af~lL~ryr~-~~~--~FnDDiQGTaaV~LAgll~Alr~~g--------~~l~d~riv~~GAGsAgiGia 315 (559)
|.+|=+...+-.++.++|.- ..| ++||+....|....+-++..++... ....+-.+||+|||.||+..|
T Consensus 148 i~~~~id~~~~~~~~~~~~v~~VP~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvIIGgGpaGl~aA 227 (517)
T PRK15317 148 ITHTMIDGALFQDEVEARNIMAVPTVFLNGEEFGQGRMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGAAAA 227 (517)
T ss_pred ceEEEEEchhCHhHHHhcCCcccCEEEECCcEEEecCCCHHHHHHHHhccccccchhhcccCCCCCEEEECCCHHHHHHH
Confidence 55666666677789999974 455 4688888888999999999887532 123456899999999999999
Q ss_pred HHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 316 ELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 316 ~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..+.. .|+ ++.++|.+
T Consensus 228 ~~la~-----~G~-------~v~li~~~ 243 (517)
T PRK15317 228 IYAAR-----KGI-------RTGIVAER 243 (517)
T ss_pred HHHHH-----CCC-------cEEEEecC
Confidence 88865 374 56666654
|
|
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=84.63 E-value=1.1 Score=45.54 Aligned_cols=103 Identities=21% Similarity=0.337 Sum_probs=58.7
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc--cCC-CCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEP-VNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~--~~~-~~~L 371 (559)
.+|++.||+++|+|..|.-+|..|+.+ |+ ++|.++|.+=+ .. .+|+.+ .-|..+ ... ...+
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~-----Gv------g~i~lvD~D~v-e~---sNL~RQ-~l~~~~diG~~Ka~~a 83 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAA-----GV------GNLTLLDFDTV-SL---SNLQRQ-VLHSDANIGQPKVESA 83 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCcc-cc---cCcccc-eeeeHhhCCCcHHHHH
Confidence 468889999999999999999999764 76 78999999722 22 124321 111111 001 1235
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE-ecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL-ALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF-aLSNPt 417 (559)
.+.++...|++-|-.-. ..++++-+.+.-+ +--+|+ +.-||.
T Consensus 84 ~~~l~~inp~v~i~~~~--~~i~~~~~~~~~~--~~DlVvd~~D~~~ 126 (240)
T TIGR02355 84 KDALTQINPHIAINPIN--AKLDDAELAALIA--EHDIVVDCTDNVE 126 (240)
T ss_pred HHHHHHHCCCcEEEEEe--ccCCHHHHHHHhh--cCCEEEEcCCCHH
Confidence 56666666776654332 2345443333211 222444 555554
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=84.50 E-value=3.4 Score=43.57 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=65.7
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 364 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~ 364 (559)
|.+++..... -..++++++|+|..|..++..+... .++ +++.++|+. .++ ...+...+.+.
T Consensus 120 ~~~a~~~la~--~~~~~v~IiGaG~~a~~~~~al~~~----~~~------~~V~v~~R~----~~~---a~~l~~~~~~~ 180 (330)
T PRK08291 120 GAVAARHLAR--EDASRAAVIGAGEQARLQLEALTLV----RPI------REVRVWARD----AAK---AEAYAADLRAE 180 (330)
T ss_pred HHHHHHHhCC--CCCCEEEEECCCHHHHHHHHHHHhc----CCC------CEEEEEcCC----HHH---HHHHHHHHhhc
Confidence 4455544432 2347999999999988777766542 243 578888763 222 22332222211
Q ss_pred ----cCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEec-CCCCCCCCCCHHH
Q 008629 365 ----HEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILAL-SNPTSQSECTAEE 426 (559)
Q Consensus 365 ----~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaL-SNPt~~~Ectped 426 (559)
.....++.++++. .|++|-++.. ...|+.+.++. .--|.++ |+--.+-|+.|+-
T Consensus 181 ~g~~v~~~~d~~~al~~--aDiVi~aT~s~~p~i~~~~l~~------g~~v~~vg~d~~~~rEld~~~ 240 (330)
T PRK08291 181 LGIPVTVARDVHEAVAG--ADIIVTTTPSEEPILKAEWLHP------GLHVTAMGSDAEHKNEIAPAV 240 (330)
T ss_pred cCceEEEeCCHHHHHcc--CCEEEEeeCCCCcEecHHHcCC------CceEEeeCCCCCCcccCCHHH
Confidence 1123678999985 8999876543 34667766652 1123333 4433456888765
|
|
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=84.45 E-value=4.5 Score=42.54 Aligned_cols=82 Identities=24% Similarity=0.331 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc
Q 008629 280 SVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK 358 (559)
Q Consensus 280 aV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k 358 (559)
-+|-.|++.=++-.+.+++.+++|++|.+. .|--+|.||.. .|. .+.+++|+
T Consensus 140 PcTp~avi~ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------tVt~chs~--------------- 192 (284)
T PRK14177 140 PCTPYGMVLLLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTE-----MNA-------TVTLCHSK--------------- 192 (284)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC---------------
Confidence 456678888888899999999999999764 67777777754 243 36666543
Q ss_pred hhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 359 KPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 359 ~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 193 ---------T~~l~~~~~~--ADIvIsAvGk~~~i~~~~ik 222 (284)
T PRK14177 193 ---------TQNLPSIVRQ--ADIIVGAVGKPEFIKADWIS 222 (284)
T ss_pred ---------CCCHHHHHhh--CCEEEEeCCCcCccCHHHcC
Confidence 1357778886 99999999999999999997
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=84.45 E-value=9.6 Score=40.45 Aligned_cols=140 Identities=14% Similarity=0.135 Sum_probs=83.5
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..|.+++|.|+|.|..|..+|+.+... |+ +++.+|+.. . . .. ...+. -...+|.|
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~-----G~-------~V~~~d~~~----~--~-~~--~~~~~---~~~~~l~e 200 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGF-----GM-------RILYYSRTR----K--P-EA--EKELG---AEYRPLEE 200 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHC-----CC-------EEEEECCCC----C--h-hh--HHHcC---CEecCHHH
Confidence 4568999999999999999999998653 64 577788741 1 1 11 01111 11247999
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEEEeeCCCC--CC
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAIFASGSPF--DP 445 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~-~w-t~G~aifAsGSPF--~p 445 (559)
+++. .|+++=.-- .-+.|+++.+..|. +..++.=.|. .++--++|+ ++ ..|+.-.|.=-=| +|
T Consensus 201 ll~~--aDiV~l~lP~t~~T~~~i~~~~~~~mk---~ga~lIN~aR----g~~vd~~aL~~aL~~g~i~gAaLDV~~~EP 271 (333)
T PRK13243 201 LLRE--SDFVSLHVPLTKETYHMINEERLKLMK---PTAILVNTAR----GKVVDTKALVKALKEGWIAGAGLDVFEEEP 271 (333)
T ss_pred HHhh--CCEEEEeCCCChHHhhccCHHHHhcCC---CCeEEEECcC----chhcCHHHHHHHHHcCCeEEEEeccCCCCC
Confidence 9886 898875431 13689999999996 6677776655 333333333 22 4566543321111 11
Q ss_pred ceeCCeeeCccCccccccchhhHHH
Q 008629 446 FEYNGKVFVPGQANNAYIFPGFGLG 470 (559)
Q Consensus 446 v~~~G~~~~p~Q~NN~yiFPGlglG 470 (559)
.. + .. -=+..|+++-|=+|-.
T Consensus 272 ~~-~-~p--L~~~~nvilTPHia~~ 292 (333)
T PRK13243 272 YY-N-EE--LFSLKNVVLAPHIGSA 292 (333)
T ss_pred CC-C-ch--hhcCCCEEECCcCCcC
Confidence 11 1 11 1234688999988743
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.38 E-value=1.5 Score=45.75 Aligned_cols=32 Identities=34% Similarity=0.406 Sum_probs=25.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|+.|.++|..|... |. ++.++|+.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~-----G~-------~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASK-----GV-------PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-----CC-------eEEEEeCC
Confidence 3799999999999999998763 52 47777763
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=84.28 E-value=6.6 Score=41.57 Aligned_cols=126 Identities=24% Similarity=0.333 Sum_probs=75.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 377 (559)
||.|+|| |.-|..+|-+|+. .|+ ...+.|+|.+. ..+-.-+|.+.. ...+-. ....++.++++.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~--a~g~a~DL~~~~-~~~~i~~~~~~~~~~~~~~d 67 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKL-----QPY-----VSELSLYDIAG--AAGVAADLSHIP-TAASVKGFSGEEGLENALKG 67 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHh-----CCC-----CcEEEEecCCC--CcEEEchhhcCC-cCceEEEecCCCchHHHcCC
Confidence 6899999 9999999988754 255 26799999876 111111244322 101101 111246777876
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhcccC--CcEEEeeC
Q 008629 378 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYTWSK--GRAIFASG 440 (559)
Q Consensus 378 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~-~~EctpedA~~wt~--G~aifAsG 440 (559)
.|++|=+.+.+.. .=+++.+.+.+++..-||+-.|||.. ++.+...-+++++. -+-+|++|
T Consensus 68 --aDivvitaG~~~~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvsNPvDv~~~i~t~~~~~~sg~p~~rViG~g 145 (312)
T TIGR01772 68 --ADVVVIPAGVPRKPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVITNPVNSTVPIAAEVLKKKGVYDPNKLFGVT 145 (312)
T ss_pred --CCEEEEeCCCCCCCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEecCchhhHHHHHHHHHHHhcCCChHHEEeee
Confidence 8988755555421 12466777888999999999999982 12223444444321 01255555
Q ss_pred C
Q 008629 441 S 441 (559)
Q Consensus 441 S 441 (559)
.
T Consensus 146 ~ 146 (312)
T TIGR01772 146 T 146 (312)
T ss_pred c
Confidence 3
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=83.95 E-value=6 Score=41.94 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=65.8
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
.||.|+|| |..|..+|-.|+. .|+-.-.-...+.|+|.+.=. .++..-+|.+...+|.....-..+..+.++
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 77 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIAS-----GEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFK 77 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----ccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhC
Confidence 38999999 9999988877664 255100011379999985322 111111243333233221111134566677
Q ss_pred ccCCcEEEeccCCC---CCCC------------HHHHHHHHcCC-CCcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVG---RTFT------------KEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g~Ft------------~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
. .|++|=+.+.+ | .| +++.+.+.+++ +.-||+-.|||-
T Consensus 78 d--aDivvitaG~~~k~g-~tR~dll~~N~~i~~~i~~~i~~~~~~~~iiivvsNPv 131 (322)
T cd01338 78 D--ADWALLVGAKPRGPG-MERADLLKANGKIFTAQGKALNDVASRDVKVLVVGNPC 131 (322)
T ss_pred C--CCEEEEeCCCCCCCC-CcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEecCcH
Confidence 5 89988665553 3 23 45677788899 499999999998
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.66 E-value=3.5 Score=43.47 Aligned_cols=83 Identities=19% Similarity=0.324 Sum_probs=64.4
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++.=++-.+.+++.++|+|+| .|..|..+|.+|.. .|. .++++++ |..
T Consensus 137 ~~PcTp~ai~~ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~-----~g~-------tVtv~~~-------rT~---- 193 (296)
T PRK14188 137 LVPCTPLGCMMLLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLA-----ANA-------TVTIAHS-------RTR---- 193 (296)
T ss_pred CcCCCHHHHHHHHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHh-----CCC-------EEEEECC-------CCC----
Confidence 34667788888889999999999999999 99999999999975 253 4555543 211
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHH
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVI 398 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv 398 (559)
+|.|+++. .|++|-+-+.+..++++++
T Consensus 194 -------------~l~e~~~~--ADIVIsavg~~~~v~~~~l 220 (296)
T PRK14188 194 -------------DLPAVCRR--ADILVAAVGRPEMVKGDWI 220 (296)
T ss_pred -------------CHHHHHhc--CCEEEEecCChhhcchhee
Confidence 37888875 8999988887877777663
|
|
| >cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like | Back alignment and domain information |
|---|
Probab=83.32 E-value=1.1 Score=44.11 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=48.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCC-----
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPV----- 368 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~----- 368 (559)
++|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+= +..+ +|+.+ .|.+. ....
T Consensus 15 ~~L~~s~VlviG~gglGsevak~L~~~-----GV------g~i~lvD~d~-ve~s---nl~rq--~~~~~~~~~iG~~Ka 77 (198)
T cd01485 15 NKLRSAKVLIIGAGALGAEIAKNLVLA-----GI------DSITIVDHRL-VSTE---DLGSN--FFLDAEVSNSGMNRA 77 (198)
T ss_pred HHHhhCcEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECCc-CChh---cCccc--EecccchhhcCchHH
Confidence 468899999999999999999999774 87 7899999983 2221 24321 12221 0111
Q ss_pred CCHHHHhcccCCcEEEe
Q 008629 369 NNLLDAVKVIKPTILIG 385 (559)
Q Consensus 369 ~~L~e~V~~vkPtvLIG 385 (559)
..+.+.++...|++=|=
T Consensus 78 ~~~~~~L~~lNp~v~i~ 94 (198)
T cd01485 78 AASYEFLQELNPNVKLS 94 (198)
T ss_pred HHHHHHHHHHCCCCEEE
Confidence 24566677777877543
|
E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol |
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=83.08 E-value=15 Score=41.34 Aligned_cols=36 Identities=22% Similarity=0.104 Sum_probs=28.8
Q ss_pred CccCccccccchhhHHHHHHhCCcccCHHHHHHHHH
Q 008629 454 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASE 489 (559)
Q Consensus 454 ~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~ 489 (559)
.||..+|-+.+|.+.-+..+...--++.+.+.++.+
T Consensus 186 ~pGfi~Nrl~~~~~~EA~~l~e~g~a~~~~ID~al~ 221 (503)
T TIGR02279 186 TPGFIVNRVARPYYAEALRALEEQVAAPAVLDAALR 221 (503)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 578899999999998888888777677777776654
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=83.02 E-value=4 Score=43.07 Aligned_cols=95 Identities=15% Similarity=0.291 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 279 ASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 279 aaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
.-+|-.|++.=++..+.+++..++|++|.+. .|.-+|.||.+.+.+ .| ..+..+.++
T Consensus 139 ~PcTp~ail~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~-~~-------atVt~~hs~-------------- 196 (295)
T PRK14174 139 VSCTPYGILELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKE-SN-------CTVTICHSA-------------- 196 (295)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhcccc-CC-------CEEEEEeCC--------------
Confidence 3567778888899999999999999999764 677788777643211 12 234444332
Q ss_pred chhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec
Q 008629 358 KKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL 413 (559)
Q Consensus 358 k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL 413 (559)
..+|.+.+++ +|++|+..+.++.|++++|+ +.-+|.-.
T Consensus 197 ----------t~~l~~~~~~--ADIvI~Avg~~~li~~~~vk------~GavVIDV 234 (295)
T PRK14174 197 ----------TKDIPSYTRQ--ADILIAAIGKARFITADMVK------PGAVVIDV 234 (295)
T ss_pred ----------chhHHHHHHh--CCEEEEecCccCccCHHHcC------CCCEEEEe
Confidence 1358888986 99999999999999999995 45566433
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.88 E-value=2.2 Score=45.77 Aligned_cols=106 Identities=23% Similarity=0.390 Sum_probs=72.2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc----cCCCCCHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNLL 372 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~----~~~~~~L~ 372 (559)
...-|++++|.|-+|+--|++.+ |+. .++.++|.+ .+| |....-.|..+ ......++
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~-------glg-----A~Vtild~n----~~r---l~~ldd~f~~rv~~~~st~~~ie 226 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAI-------GLG-----ADVTILDLN----IDR---LRQLDDLFGGRVHTLYSTPSNIE 226 (371)
T ss_pred CCCccEEEECCccccchHHHHHh-------ccC-----CeeEEEecC----HHH---HhhhhHhhCceeEEEEcCHHHHH
Confidence 56789999999999999988765 432 467778764 333 44444444432 12224699
Q ss_pred HHhcccCCcEEEec-----cCCCCCCCHHHHHHHHcCCCCcEE----------EecCCCCCCCCCCHHH
Q 008629 373 DAVKVIKPTILIGS-----SGVGRTFTKEVIEAMASFNEKPLI----------LALSNPTSQSECTAEE 426 (559)
Q Consensus 373 e~V~~vkPtvLIG~-----S~~~g~Ft~evv~~Ma~~~erPII----------FaLSNPt~~~Ectped 426 (559)
|+|++ .|.+||. +..|.+.|+|+++.|. +.-+| |-=|.||+..+-|.++
T Consensus 227 e~v~~--aDlvIgaVLIpgakaPkLvt~e~vk~Mk---pGsVivDVAiDqGGc~Et~~~TTh~~PtY~~ 290 (371)
T COG0686 227 EAVKK--ADLVIGAVLIPGAKAPKLVTREMVKQMK---PGSVIVDVAIDQGGCFETSHPTTHDDPTYEV 290 (371)
T ss_pred HHhhh--ccEEEEEEEecCCCCceehhHHHHHhcC---CCcEEEEEEEcCCCceeccccccCCCCceee
Confidence 99985 9998887 4556789999999997 33333 5556777776666543
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=82.82 E-value=10 Score=41.37 Aligned_cols=167 Identities=15% Similarity=0.228 Sum_probs=94.0
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--------c-
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--------E- 364 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--------~- 364 (559)
|..|.++++.|+|.|..|..+|+++..+| |+ +++.+|+..- . .+..+...+-. +
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~f----Gm-------~V~~~d~~~~---~---~~~~~~~~~~~~l~~~~~~~~ 222 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGF----KM-------NLIYYDLYQS---T---RLEKFVTAYGQFLKANGEQPV 222 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcC----CC-------EEEEECCCCc---h---hhhhhhhhhcccccccccccc
Confidence 44688999999999999999999986543 64 5888887421 0 01111001100 0
Q ss_pred -cCCCCCHHHHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc--cCCcEEE
Q 008629 365 -HEPVNNLLDAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW--SKGRAIF 437 (559)
Q Consensus 365 -~~~~~~L~e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w--t~G~aif 437 (559)
.....+|.|+++. .|+++-. ...-|.|+++.++.|. +.-++.=.| +.++-=|+|+.- ..|+.-.
T Consensus 223 ~~~~~~~L~ell~~--sDiV~lh~Plt~~T~~lin~~~l~~MK---~ga~lIN~a----RG~lVDe~AL~~AL~sg~i~g 293 (386)
T PLN02306 223 TWKRASSMEEVLRE--ADVISLHPVLDKTTYHLINKERLALMK---KEAVLVNAS----RGPVIDEVALVEHLKANPMFR 293 (386)
T ss_pred cccccCCHHHHHhh--CCEEEEeCCCChhhhhhcCHHHHHhCC---CCeEEEECC----CccccCHHHHHHHHHhCCeeE
Confidence 0112479999986 9998873 2234799999999996 555666555 455555555422 2455332
Q ss_pred eeCC-CC--CCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 008629 438 ASGS-PF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 438 AsGS-PF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
| |- =| +|. .+. .-=+..|+.+-|=++-...-+ ...|...+++-+.....
T Consensus 294 A-aLDVf~~EP~-~~~---~L~~~pNVilTPHiag~T~e~-----~~~~~~~~~~ni~~~~~ 345 (386)
T PLN02306 294 V-GLDVFEDEPY-MKP---GLADMKNAVVVPHIASASKWT-----REGMATLAALNVLGKLK 345 (386)
T ss_pred E-EEeCCCCCCC-Ccc---hHhhCCCEEECCccccCcHHH-----HHHHHHHHHHHHHHHHc
Confidence 2 21 01 111 011 112456888989877322211 13444445555544443
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=82.43 E-value=1.7 Score=44.18 Aligned_cols=38 Identities=26% Similarity=0.400 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|.-|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAA-----GV------GTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 478899999999999999999999774 76 789999998
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.37 E-value=2.1 Score=42.22 Aligned_cols=118 Identities=12% Similarity=0.173 Sum_probs=67.6
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~ 377 (559)
++.||.|+|+|..|..++..+... |.. -.++++++++. + .+.+...+.+|- .....++.++++.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~-----~~~---~~~~i~~~~~~-----~-~~~~~~~~~~~~--~~~~~~~~~~~~~ 66 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKT-----SKE---YIEEIIVSNRS-----N-VEKLDQLQARYN--VSTTTDWKQHVTS 66 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-----CCC---CcCeEEEECCC-----C-HHHHHHHHHHcC--cEEeCChHHHHhc
Confidence 457899999999999998888642 310 11346655542 0 111333332231 1122467888874
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC-CcEEEeeC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK-GRAIFASG 440 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~-G~aifAsG 440 (559)
.|++| ++..+. .-+++++.++.+-...+|+.++.-. +.++.-+|.+ +..++-++
T Consensus 67 --~DiVi-iavp~~-~~~~v~~~l~~~~~~~~vis~~~gi-----~~~~l~~~~~~~~~v~r~~ 121 (245)
T PRK07634 67 --VDTIV-LAMPPS-AHEELLAELSPLLSNQLVVTVAAGI-----GPSYLEERLPKGTPVAWIM 121 (245)
T ss_pred --CCEEE-EecCHH-HHHHHHHHHHhhccCCEEEEECCCC-----CHHHHHHHcCCCCeEEEEC
Confidence 78776 455454 4588999887543445777777665 3344444443 33455555
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.33 E-value=16 Score=38.47 Aligned_cols=92 Identities=14% Similarity=0.131 Sum_probs=63.9
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.+.++.|+|-|..|..+|+++. + .|+ +++.+|+... .+.. + . ...+|.|
T Consensus 117 ~~~L~gktvgIiG~G~IG~~vA~~l~-a----fG~-------~V~~~~r~~~-----~~~~---~-~------~~~~l~e 169 (303)
T PRK06436 117 TKLLYNKSLGILGYGGIGRRVALLAK-A----FGM-------NIYAYTRSYV-----NDGI---S-S------IYMEPED 169 (303)
T ss_pred CCCCCCCEEEEECcCHHHHHHHHHHH-H----CCC-------EEEEECCCCc-----ccCc---c-c------ccCCHHH
Confidence 45799999999999999999998664 3 265 5888887511 0111 0 0 1247899
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+++. .|+++=+-. .-+.|+++.++.|. +..++.=.|.-.
T Consensus 170 ll~~--aDiv~~~lp~t~~T~~li~~~~l~~mk---~ga~lIN~sRG~ 212 (303)
T PRK06436 170 IMKK--SDFVLISLPLTDETRGMINSKMLSLFR---KGLAIINVARAD 212 (303)
T ss_pred HHhh--CCEEEECCCCCchhhcCcCHHHHhcCC---CCeEEEECCCcc
Confidence 8875 888874321 23688999999996 677888777643
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=4.3 Score=43.88 Aligned_cols=114 Identities=19% Similarity=0.223 Sum_probs=61.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC-ccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G-Li~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
.+++.+++|+|+|.+|.++|+.|.. .| .+++++|++. .....+.+.|......+... ....+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~-----~G-------~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~----~~~~~~ 65 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKK-----LG-------AKVILTDEKEEDQLKEALEELGELGIELVLG----EYPEEF 65 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHH-----CC-------CEEEEEeCCchHHHHHHHHHHHhcCCEEEeC----CcchhH
Confidence 3677899999999999999988876 36 4689998863 00000000011100011000 001122
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 441 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGS 441 (559)
+. ++|++|-.++.. .-++++..+= ...-||+ ++.|+.... ...+.|-.|||
T Consensus 66 ~~--~~d~vv~~~g~~-~~~~~~~~a~--~~~i~~~-------~~~~~~~~~----~~~~vI~ITGS 116 (450)
T PRK14106 66 LE--GVDLVVVSPGVP-LDSPPVVQAH--KKGIEVI-------GEVELAYRF----SKAPIVAITGT 116 (450)
T ss_pred hh--cCCEEEECCCCC-CCCHHHHHHH--HCCCcEE-------eHHHHHHhh----cCCCEEEEeCC
Confidence 33 489888766643 4456555442 2345665 223332222 23678889998
|
|
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=82.21 E-value=6.3 Score=41.78 Aligned_cols=85 Identities=16% Similarity=0.237 Sum_probs=66.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.=++-.|.+|+.+++|++|-+. .|.-+|.||.. .|. .+.+++|+
T Consensus 145 ~~~PcTp~avi~lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~-----~~A-------TVtvchs~------------ 200 (299)
T PLN02516 145 LFLPCTPKGCLELLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLK-----ADA-------TVTVVHSR------------ 200 (299)
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHHH-----CCC-------EEEEeCCC------------
Confidence 345677788899999999999999999999764 57777777754 242 46666553
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.++|.+.+++ +|++|-..+.++.|+.++|+
T Consensus 201 ------------T~nl~~~~~~--ADIvv~AvGk~~~i~~~~vk 230 (299)
T PLN02516 201 ------------TPDPESIVRE--ADIVIAAAGQAMMIKGDWIK 230 (299)
T ss_pred ------------CCCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 1357888886 99999999999999999997
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=82.08 E-value=2.3 Score=43.65 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=57.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC-CcCCCch--hc-hhhccccCCCCCHHHHhc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQH--FK-KPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~-R~~~l~~--~k-~~fA~~~~~~~~L~e~V~ 376 (559)
||.|+|+|..|..+|..|... | .+++++|+..-.... +...... .. ...........++.++++
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-----G-------HDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALA 70 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHh
Confidence 799999999999999998753 4 357777774211100 0000000 00 000000011246777776
Q ss_pred ccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 377 VIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
. +|++| ++... ...+++++.+..+ .+..+|..++|-..
T Consensus 71 ~--~D~vi-~~v~~-~~~~~v~~~l~~~~~~~~~vi~~~ngv~ 109 (325)
T PRK00094 71 D--ADLIL-VAVPS-QALREVLKQLKPLLPPDAPIVWATKGIE 109 (325)
T ss_pred C--CCEEE-EeCCH-HHHHHHHHHHHhhcCCCCEEEEEeeccc
Confidence 4 77776 33322 3578888887754 34568888887443
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=81.84 E-value=2.9 Score=43.33 Aligned_cols=118 Identities=19% Similarity=0.374 Sum_probs=69.2
Q ss_pred EEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhcccc---CCCCCHHHH
Q 008629 302 FLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH---EPVNNLLDA 374 (559)
Q Consensus 302 iv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~---~~~~~L~e~ 374 (559)
|.|+|||..|.++|..++. .|+ + .++|+|.+ .++.+ ++.+.. .+.... ....+.. +
T Consensus 1 I~IIGaG~vG~~ia~~la~-----~~l----~--eV~L~Di~----e~~~~g~~~dl~~~~-~~~~~~~~I~~t~d~~-~ 63 (300)
T cd01339 1 ISIIGAGNVGATLAQLLAL-----KEL----G--DVVLLDIV----EGLPQGKALDISQAA-PILGSDTKVTGTNDYE-D 63 (300)
T ss_pred CEEECCCHHHHHHHHHHHh-----CCC----c--EEEEEeCC----CcHHHHHHHHHHHhh-hhcCCCeEEEEcCCHH-H
Confidence 5799999999999987764 365 2 69999986 22210 011110 000000 0113444 4
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC--CcEEEe
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK--GRAIFA 438 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~--G~aifA 438 (559)
++. .|++|=+.+.+.. +-+++++.|.+++...+|+-.|||. ......++++++ -+-+|+
T Consensus 64 l~d--ADiVIit~g~p~~~~~~r~e~~~~n~~i~~~i~~~i~~~~p~~~iIv~sNP~---di~t~~~~~~s~~~~~rviG 138 (300)
T cd01339 64 IAG--SDVVVITAGIPRKPGMSRDDLLGTNAKIVKEVAENIKKYAPNAIVIVVTNPL---DVMTYVAYKASGFPRNRVIG 138 (300)
T ss_pred hCC--CCEEEEecCCCCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcH---HHHHHHHHHHhCCCHHHEEE
Confidence 654 8888844333211 2347888999999999999999998 233334445441 124777
Q ss_pred eCC
Q 008629 439 SGS 441 (559)
Q Consensus 439 sGS 441 (559)
+|+
T Consensus 139 lgt 141 (300)
T cd01339 139 MAG 141 (300)
T ss_pred ecc
Confidence 774
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.79 E-value=9.6 Score=40.34 Aligned_cols=85 Identities=19% Similarity=0.241 Sum_probs=66.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++.-++..|.+++.+++|++|.+. .|.-+|.||.. .|. .+.+++|+ +
T Consensus 138 ~~~PcTp~avi~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~-----~~a-------TVt~chs~-------T---- 194 (294)
T PRK14187 138 CLIPCTPKGCLYLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLG-----ENC-------TVTTVHSA-------T---- 194 (294)
T ss_pred CccCcCHHHHHHHHHHhCCCCCCCEEEEECCCccchHHHHHHHhh-----CCC-------EEEEeCCC-------C----
Confidence 345678888899999999999999999999764 57777777753 242 35566553 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.++.++|+
T Consensus 195 -------------~~l~~~~~~--ADIvVsAvGkp~~i~~~~ik 223 (294)
T PRK14187 195 -------------RDLADYCSK--ADILVAAVGIPNFVKYSWIK 223 (294)
T ss_pred -------------CCHHHHHhh--CCEEEEccCCcCccCHHHcC
Confidence 357777886 99999999999999999997
|
|
| >PRK15116 sulfur acceptor protein CsdL; Provisional | Back alignment and domain information |
|---|
Probab=81.48 E-value=4.3 Score=42.25 Aligned_cols=108 Identities=16% Similarity=0.198 Sum_probs=65.2
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CC-CCCH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EP-VNNL 371 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~-~~~L 371 (559)
.+|++.+|+|+|+|..|.-+|+.|+.+ |+ ++|.++|.+=+-.. +++. |..+-.+. .. ..-+
T Consensus 26 ~kL~~s~VlVvG~GGVGs~vae~Lar~-----GV------g~itLiD~D~V~~s----NlnR-Q~~~~~~~vG~~Kve~~ 89 (268)
T PRK15116 26 QLFADAHICVVGIGGVGSWAAEALART-----GI------GAITLIDMDDVCVT----NTNR-QIHALRDNVGLAKAEVM 89 (268)
T ss_pred HHhcCCCEEEECcCHHHHHHHHHHHHc-----CC------CEEEEEeCCEeccc----cccc-ccccChhhcChHHHHHH
Confidence 468899999999999999999998874 76 78999998844332 2442 21111110 00 1246
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQS 420 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~ 420 (559)
.+-+..+.|++-|-.- ...++++-+...-...-.=||-+.-|+..+.
T Consensus 90 ~~rl~~INP~~~V~~i--~~~i~~e~~~~ll~~~~D~VIdaiD~~~~k~ 136 (268)
T PRK15116 90 AERIRQINPECRVTVV--DDFITPDNVAEYMSAGFSYVIDAIDSVRPKA 136 (268)
T ss_pred HHHHHhHCCCcEEEEE--ecccChhhHHHHhcCCCCEEEEcCCCHHHHH
Confidence 6777777788766432 2345655554443222234666777766433
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.46 E-value=4.1 Score=43.29 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=25.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
.||.|+|+|..|.|||..++.+ |. ++.++|.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~a-----G~-------~V~l~D~ 38 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAH-----GL-------DVVAWDP 38 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEeC
Confidence 5899999999999999998763 64 4666665
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.42 E-value=28 Score=35.52 Aligned_cols=32 Identities=31% Similarity=0.567 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|+|..|.+||..+... |. +++++|.+
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~-----g~-------~V~~~d~~ 35 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVA-----GY-------DVVMVDIS 35 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHC-----CC-------ceEEEeCC
Confidence 5899999999999999988653 64 68888853
|
|
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.42 E-value=8.6 Score=40.90 Aligned_cols=111 Identities=17% Similarity=0.126 Sum_probs=66.2
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCchhchhhccccCCCCCHHHHhc
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDAVK 376 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~ 376 (559)
-||.|+|| |..|..+|-.|+. .|+-.-+-...|.|+|.+.-. .++..-+|.+..-++-+...-..+..+.++
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~-----~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~ 78 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIAS-----GELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFK 78 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHh-----CCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhC
Confidence 38999998 9999999887764 355110011279999985311 111111233322122221111135566677
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCC-CcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNE-KPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~e-rPIIFaLSNPt 417 (559)
. .|++|=+.+.+ |- .=+++++.+++++. .-||+--|||-
T Consensus 79 d--aDvVVitAG~~~k~g~tR~dll~~Na~i~~~i~~~i~~~~~~~~iiivvsNPv 132 (323)
T TIGR01759 79 D--VDAALLVGAFPRKPGMERADLLSKNGKIFKEQGKALNKVAKKDVKVLVVGNPA 132 (323)
T ss_pred C--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCcH
Confidence 5 89888555543 31 12457778888997 99999999998
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.30 E-value=6.3 Score=41.40 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=67.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-+|++.=++-.|.+++.++++++|-+. .|--+|.||.. .|. .+.+|+|+ +
T Consensus 135 ~~~PcTp~avi~lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~-----~~a-------tVt~chs~-------T---- 191 (282)
T PRK14166 135 GFLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLN-----AGA-------TVSVCHIK-------T---- 191 (282)
T ss_pred CCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C----
Confidence 456778889999999999999999999999764 67777777753 243 35555543 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.|++++|+
T Consensus 192 -------------~nl~~~~~~--ADIvIsAvGkp~~i~~~~vk 220 (282)
T PRK14166 192 -------------KDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK 220 (282)
T ss_pred -------------CCHHHHHhh--CCEEEEcCCCcCccCHHHcC
Confidence 358888886 99999999999999999997
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.20 E-value=4.3 Score=41.29 Aligned_cols=101 Identities=13% Similarity=0.131 Sum_probs=56.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch--h-chhhccccCCCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH--F-KKPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~--~-k~~fA~~~~~~~~L~e~V~~ 377 (559)
||.|+|+|+.|..+|..|... | .+++++++.--+..-+...+.- . ..... ......++.++++
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~- 67 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-----G-------RDVTFLVRPKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTG- 67 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-----C-------CceEEEecHHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccC-
Confidence 799999999999999888753 4 3578887711100000000100 0 00000 0011235556554
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
.+|++|=+... ...+++++.++.+ .+..+|+.+.|.-.
T Consensus 68 -~~d~vilavk~--~~~~~~~~~l~~~~~~~~~ii~~~nG~~ 106 (305)
T PRK12921 68 -PFDLVILAVKA--YQLDAAIPDLKPLVGEDTVIIPLQNGIG 106 (305)
T ss_pred -CCCEEEEEecc--cCHHHHHHHHHhhcCCCCEEEEeeCCCC
Confidence 36766533332 2478999988763 35567888999863
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=81.16 E-value=4.5 Score=42.59 Aligned_cols=102 Identities=16% Similarity=0.327 Sum_probs=64.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--ccC-CCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--EHE-PVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--~~~-~~~~L~e~V~~ 377 (559)
||.|+|||..|..+|-.|+. .|+ .+.+.|+|.+-=..++-.-+|.+.. .|.. +.. ..++ .+.++.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~~~~a~g~a~DL~~~~-~~~~~~~~~i~~~~-y~~~~~ 68 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALA-----LGL-----FSEIVLIDVNEGVAEGEALDFHHAT-ALTYSTNTKIRAGD-YDDCAD 68 (307)
T ss_pred CEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCcchhhHHHHHHHhhh-ccCCCCCEEEEECC-HHHhCC
Confidence 68999999999999988764 265 3579999974111111101233221 2221 100 0123 455665
Q ss_pred cCCcEEEeccCCC---CCCC--------------HHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RTFT--------------KEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~Ft--------------~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ | -| +++++.+.+++...|++-.|||.
T Consensus 69 --aDivvitaG~~~kpg-~tr~R~dll~~N~~I~~~i~~~i~~~~p~~i~ivvsNPv 122 (307)
T cd05290 69 --ADIIVITAGPSIDPG-NTDDRLDLAQTNAKIIREIMGNITKVTKEAVIILITNPL 122 (307)
T ss_pred --CCEEEECCCCCCCCC-CCchHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEecCcH
Confidence 88888666653 3 23 57788888999999999999997
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=81.02 E-value=2.1 Score=39.15 Aligned_cols=69 Identities=23% Similarity=0.324 Sum_probs=43.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--c-cCC-CCCHHHHhc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--E-HEP-VNNLLDAVK 376 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--~-~~~-~~~L~e~V~ 376 (559)
||+++|+|.-|.-+|+.|+.. |+ ++|.++|.+-+ .. .+|..+ .|.. + ..+ ...+.+.++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-----Gv------~~i~ivD~d~v-~~---~nl~r~--~~~~~~~vG~~Ka~~~~~~l~ 63 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-----GV------GKITLIDFDTV-EL---SNLNRQ--FLARQADIGKPKAEVAARRLN 63 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-----CC------CEEEEEcCCCc-Cc---chhhcc--ccCChhHCCChHHHHHHHHHH
Confidence 689999999999999999774 76 78999998733 22 124322 1221 1 111 124666677
Q ss_pred ccCCcEEEec
Q 008629 377 VIKPTILIGS 386 (559)
Q Consensus 377 ~vkPtvLIG~ 386 (559)
...|.+=|-.
T Consensus 64 ~~~p~v~i~~ 73 (143)
T cd01483 64 ELNPGVNVTA 73 (143)
T ss_pred HHCCCcEEEE
Confidence 6677665543
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=81.00 E-value=7.1 Score=41.17 Aligned_cols=86 Identities=20% Similarity=0.326 Sum_probs=67.6
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
.+-.-+|-+|++.=++..+.+++..++|++|.+. .|.-+|.||.. .|. .+.+|+|+ .
T Consensus 136 ~~~~PcTp~av~~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~-----~~A-------TVtichs~-------T--- 193 (288)
T PRK14171 136 QGFIPCTALGCLAVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLK-----ENC-------SVTICHSK-------T--- 193 (288)
T ss_pred CCCcCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHH-----CCC-------EEEEeCCC-------C---
Confidence 3456778888999999999999999999999764 67778777754 243 35555542 1
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 355 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 355 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
++|.+.+++ +|++|-..+.++.+++++|+
T Consensus 194 --------------~~L~~~~~~--ADIvV~AvGkp~~i~~~~vk 222 (288)
T PRK14171 194 --------------HNLSSITSK--ADIVVAAIGSPLKLTAEYFN 222 (288)
T ss_pred --------------CCHHHHHhh--CCEEEEccCCCCccCHHHcC
Confidence 357888886 99999999999999999997
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.63 E-value=10 Score=41.66 Aligned_cols=118 Identities=16% Similarity=0.238 Sum_probs=62.8
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccc-cCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV-SSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~-~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
+...||+|+|.|-.|+++|++|.. .|. .+.++|.+---. ......|......+. .. ....+-+
T Consensus 12 ~~~~~i~v~G~G~sG~a~a~~L~~-----~G~-------~V~~~D~~~~~~~~~~~~~l~~~gi~~~---~~-~~~~~~~ 75 (458)
T PRK01710 12 IKNKKVAVVGIGVSNIPLIKFLVK-----LGA-------KVTAFDKKSEEELGEVSNELKELGVKLV---LG-ENYLDKL 75 (458)
T ss_pred hcCCeEEEEcccHHHHHHHHHHHH-----CCC-------EEEEECCCCCccchHHHHHHHhCCCEEE---eC-CCChHHh
Confidence 456799999999999999999875 364 577888642000 000000111000110 11 1123334
Q ss_pred cccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeee
Q 008629 376 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 453 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 453 (559)
+ ++|.+|=.++.+ .-.+++.++.. ..-||+ +.+| -++.+.+.+.|-.||| ||||-
T Consensus 76 ~--~~dlVV~Spgi~-~~~p~~~~a~~--~~i~i~-------s~~e----~~~~~~~~~vIaITGT-------nGKTT 130 (458)
T PRK01710 76 D--GFDVIFKTPSMR-IDSPELVKAKE--EGAYIT-------SEME----EFIKYCPAKVFGVTGS-------DGKTT 130 (458)
T ss_pred c--cCCEEEECCCCC-CCchHHHHHHH--cCCcEE-------echH----HhhhhcCCCEEEEECC-------CCHHH
Confidence 3 478666444433 23455555544 346775 2233 3444445678889998 77653
|
|
| >cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E | Back alignment and domain information |
|---|
Probab=80.57 E-value=1.8 Score=43.80 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=33.0
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.+|+++|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 8 ~L~~~~VlVvG~GGvGs~va~~Lar~-----GV------g~i~LvD~D 44 (231)
T cd00755 8 KLRNAHVAVVGLGGVGSWAAEALARS-----GV------GKLTLIDFD 44 (231)
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 57889999999999999999999764 86 789999987
|
coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=80.41 E-value=2.1 Score=41.14 Aligned_cols=32 Identities=34% Similarity=0.423 Sum_probs=28.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+++|+|..|..||+.|+.. |+ ++|.++|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~-----Gv------g~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARS-----GV------GNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 689999999999999999764 76 789999987
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=80.17 E-value=5.7 Score=40.23 Aligned_cols=100 Identities=15% Similarity=0.185 Sum_probs=55.3
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC-CcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~-R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||.|+|+|+.|..+|..|... | .+++++|+++=-... +...+.-....+........++.++ + +
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-----g-------~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~--~ 66 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-----G-------HDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-G--P 66 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-----C-------CeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-C--C
Confidence 799999999999999888653 4 468888874211000 0001100000000000112345553 3 5
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
+|++| ++... .-++++++.++.+. +.-+|+.+.|.-
T Consensus 67 ~d~vi-la~k~-~~~~~~~~~l~~~l~~~~~iv~~~nG~ 103 (304)
T PRK06522 67 QDLVI-LAVKA-YQLPAALPSLAPLLGPDTPVLFLQNGV 103 (304)
T ss_pred CCEEE-Eeccc-ccHHHHHHHHhhhcCCCCEEEEecCCC
Confidence 78777 44333 24799999998643 334667799975
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=80.05 E-value=1.7 Score=50.34 Aligned_cols=40 Identities=25% Similarity=0.398 Sum_probs=34.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
.+|++.||+++|||.-|.-+|+.|+.+ |+ ++|.+||.+-+
T Consensus 334 ekL~~~kVLIvGaGGLGs~VA~~La~~-----GV------g~ItlVD~D~V 373 (664)
T TIGR01381 334 ERYSQLKVLLLGAGTLGCNVARCLIGW-----GV------RHITFVDNGKV 373 (664)
T ss_pred HHHhcCeEEEECCcHHHHHHHHHHHHc-----CC------CeEEEEcCCEE
Confidence 467899999999999999999999875 87 79999998743
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 559 | ||||
| 2aw5_A | 575 | Crystal Structure Of A Human Malic Enzyme Length = | 1e-136 | ||
| 1gz3_A | 554 | Molecular Mechanism For The Regulation Of Human Mit | 1e-133 | ||
| 1gq2_A | 555 | Malic Enzyme From Pigeon Liver Length = 555 | 1e-130 | ||
| 1efk_A | 584 | Structure Of Human Malic Enzyme In Complex With Ket | 1e-128 | ||
| 1qr6_A | 584 | Human Mitochondrial Nad(P)-Dependent Malic Enzyme L | 1e-128 | ||
| 1gz4_A | 551 | Molecular Mechanism Of The Regulation Of Human Mito | 1e-128 | ||
| 1do8_A | 564 | Crystal Structure Of A Closed Form Of Human Mitocho | 1e-128 | ||
| 1llq_A | 605 | Crystal Structure Of Malic Enzyme From Ascaris Suum | 1e-121 | ||
| 3nv9_A | 487 | Crystal Structure Of Entamoeba Histolytica Malic En | 4e-16 | ||
| 2dvm_A | 439 | Nad Complex Structure Of Ph1275 Protein From Pyroco | 2e-10 | ||
| 2a9f_A | 398 | Crystal Structure Of A Putative Malic Enzyme ((S)- | 3e-10 | ||
| 1ww8_A | 439 | Crystal Structure Of Malic Enzyme From Pyrococcus H | 2e-09 | ||
| 2hae_A | 386 | Crystal Structure Of A Putative Malic Enzyme (Malat | 2e-08 | ||
| 1vl6_A | 388 | Crystal Structure Of Nad-Dependent Malic Enzyme (Tm | 4e-07 |
| >pdb|2AW5|A Chain A, Crystal Structure Of A Human Malic Enzyme Length = 575 | Back alignment and structure |
|
| >pdb|1GZ3|A Chain A, Molecular Mechanism For The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 554 | Back alignment and structure |
|
| >pdb|1GQ2|A Chain A, Malic Enzyme From Pigeon Liver Length = 555 | Back alignment and structure |
|
| >pdb|1EFK|A Chain A, Structure Of Human Malic Enzyme In Complex With Ketomalonate Length = 584 | Back alignment and structure |
|
| >pdb|1QR6|A Chain A, Human Mitochondrial Nad(P)-Dependent Malic Enzyme Length = 584 | Back alignment and structure |
|
| >pdb|1GZ4|A Chain A, Molecular Mechanism Of The Regulation Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme By Atp And Fumarate Length = 551 | Back alignment and structure |
|
| >pdb|1DO8|A Chain A, Crystal Structure Of A Closed Form Of Human Mitochondrial Nad(P)+-Dependent Malic Enzyme Length = 564 | Back alignment and structure |
|
| >pdb|1LLQ|A Chain A, Crystal Structure Of Malic Enzyme From Ascaris Suum Complexed With Nicotinamide Adenine Dinucleotide Length = 605 | Back alignment and structure |
|
| >pdb|3NV9|A Chain A, Crystal Structure Of Entamoeba Histolytica Malic Enzyme Length = 487 | Back alignment and structure |
|
| >pdb|2DVM|A Chain A, Nad Complex Structure Of Ph1275 Protein From Pyrococcus Horikoshii Length = 439 | Back alignment and structure |
|
| >pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)- Malate:nad+ Oxidoreductase (Decarboxylating)) Length = 398 | Back alignment and structure |
|
| >pdb|1WW8|A Chain A, Crystal Structure Of Malic Enzyme From Pyrococcus Horikoshii Ot3 Length = 439 | Back alignment and structure |
|
| >pdb|2HAE|A Chain A, Crystal Structure Of A Putative Malic Enzyme (Malate Oxidoreductase) Length = 386 | Back alignment and structure |
|
| >pdb|1VL6|A Chain A, Crystal Structure Of Nad-Dependent Malic Enzyme (Tm0542) From Thermotoga Maritima At 2.61 A Resolution Length = 388 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A Length = 555 | Back alignment and structure |
|---|
Score = 780 bits (2016), Expect = 0.0
Identities = 258/541 (47%), Positives = 353/541 (65%), Gaps = 35/541 (6%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
GY +LRDP NKG+AFT +ER + GLLPP + Q Q ++ + + L +Y+
Sbjct: 3 GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+M L++RNE+LFYK+L ++E +P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I
Sbjct: 63 LMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS-------- 223
+L++WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P
Sbjct: 123 TMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLD 182
Query: 224 ------------------------AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 259
Y +LLDEFM AV YG LIQFEDFAN NAF
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFR 242
Query: 260 LLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIA 319
LL KY + FNDDIQGTASV +AG++AAL++ L++H LF GAGEA GIA LI
Sbjct: 243 LLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIV 302
Query: 320 LEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379
+ + K+ EE K+I +VDSKGLIV R L K+ +AHEH + NL D VK IK
Sbjct: 303 MAMQKE-GVSKEEAIKRIWMVDSKGLIVKGRAS-LTPEKEHFAHEHCEMKNLEDIVKDIK 360
Query: 380 PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS 439
PT+LIG + +G FT+++++ MA+FN++P+I ALSNPTS++ECTAE+ Y +++GR IFAS
Sbjct: 361 PTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFAS 420
Query: 440 GSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEE 498
GSPFDP +G+ PGQ NN+Y+FPG LG++ G + DD+ L +E +A++V+EE
Sbjct: 421 GSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEE 480
Query: 499 NFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
N ++G +YPP I+++S IA +A +AY A+ P+P++L S +Y+ Y +
Sbjct: 481 NLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 540
Query: 559 R 559
Sbjct: 541 V 541
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* Length = 564 | Back alignment and structure |
|---|
Score = 774 bits (2001), Expect = 0.0
Identities = 250/544 (45%), Positives = 349/544 (64%), Gaps = 36/544 (6%)
Query: 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKY 109
G L+ +PR NKG+AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY
Sbjct: 3 EKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKY 62
Query: 110 VAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGK 169
+ +M ++ERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G
Sbjct: 63 IYIMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGH 122
Query: 170 ILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS------ 223
+ ++ NWPE ++ +VVTDGERILGLGDLG GMGIPVGKL LYTA GIRP
Sbjct: 123 VRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVC 182
Query: 224 --------------------------AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 257
+Y +L+DEFM A+ YG LIQFEDF NHNA
Sbjct: 183 IDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNA 242
Query: 258 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAEL 317
F L KY + FNDDIQGTA+V LAG++AA K+I ++EH+ LFLGAGEA GIA L
Sbjct: 243 FRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANL 302
Query: 318 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAV 375
I + + + +E +KKI + D GL+V RK + +++P+ H + DAV
Sbjct: 303 IVMSMVEN-GLSEQEAQKKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAV 361
Query: 376 KVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRA 435
++KP+ +IG +G GR FT +VI AMAS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR
Sbjct: 362 NILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRC 421
Query: 436 IFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQ 494
+FASGSPF P + +G+VF PGQ NN YIFPG L +++ + D + L A++AL Q
Sbjct: 422 LFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQ 481
Query: 495 VTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPV 554
+T+E +G +YPP +NI+++S NIA V Y +A R P P++ K + +
Sbjct: 482 LTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSE 541
Query: 555 YRNY 558
Y +
Sbjct: 542 YDSL 545
|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* Length = 605 | Back alignment and structure |
|---|
Score = 775 bits (2004), Expect = 0.0
Identities = 244/576 (42%), Positives = 351/576 (60%), Gaps = 44/576 (7%)
Query: 25 GGVEDVYGEDRATEDQ-------LVTPWTISV-ASGYCLLRDPRHNKGLAFTEKERDAHY 76
EDVY + D+ L P ++ LL++PR NKG+ F+ ER
Sbjct: 4 AHHEDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLG 63
Query: 77 LRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLP 136
L GLLPPA ++Q+ Q +++ +R+ L +Y+ + L++RNE+LFY+++ D+V+EL+P
Sbjct: 64 LHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMP 123
Query: 137 VVYTPTVGEACQKYGSIFRRPQGLYISLKEKG--KILEVLKNWPERSIQVIVVTDGERIL 194
+VYTPTVG ACQ +G I+R+P+GLYI++ + KI ++L NW E ++ IVVTDGERIL
Sbjct: 124 IVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERIL 183
Query: 195 GLGDLGCQGMGIPVGKLALYTALGGIRPS------------------------------- 223
GLGDLG G+GIPVGKLALY ALGG++P
Sbjct: 184 GLGDLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVR 243
Query: 224 -AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDDIQGTASVV 282
+Y LLD FM A + YG+K LIQFEDFAN NAF LL KY + +FNDDIQGTASV+
Sbjct: 244 GKDYDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDDIQGTASVI 303
Query: 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342
+AG++ ++ +++ ++LF GAG A TGIAE+I ++ + EE +I L+D
Sbjct: 304 VAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEGI-SKEEACNRIYLMDI 362
Query: 343 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMA 402
GL+ +RK+ + +A + ++L+ ++ +P LIG+S V F +EVI AMA
Sbjct: 363 DGLVTKNRKE-MNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMA 421
Query: 403 SFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAY 462
NE+P+I ALSNPTS++ECTAEEAYT++ G A++ASGSPF FE NG + PGQ NNAY
Sbjct: 422 EINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAY 481
Query: 463 IFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAAN 522
IFPG LG ++ V +D+ L A++ +A VTE++ + G +YP IR+IS IA
Sbjct: 482 IFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIREISIQIAVE 541
Query: 523 VAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
+A Y+ G A P+P++L K + +Y Y
Sbjct: 542 MAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEEL 577
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} Length = 398 | Back alignment and structure |
|---|
Score = 153 bits (390), Expect = 9e-42
Identities = 110/420 (26%), Positives = 160/420 (38%), Gaps = 79/420 (18%)
Query: 135 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 194
L + YTP V I + Y L K V V++DG +L
Sbjct: 36 LSIAYTPGVASVSSA---IAKDKTLAY-DLTTKKNT-------------VAVISDGTAVL 78
Query: 195 GLGDLGCQGMGIPV--GKLALYTALGGIR--PSAEYAELLDEFMSAVKQ---NYGEKVLI 247
GLGD+G + +PV GK AL+ A G+ P + +E +S VK +G I
Sbjct: 79 GLGDIGPEA-AMPVMEGKAALFKAFAGVDAIPIVLDTKDTEEIISIVKALAPTFGG---I 134
Query: 248 QFEDFANHNAFELLAKYGTTHL-------VFNDDIQGTASVVLAGVVAALKLIGGTLAEH 300
ED + FE+ + L VF+DD GTA VVLA + +LKL+ +L E
Sbjct: 135 NLEDISAPRCFEIEQR-----LIKECHIPVFHDDQHGTAIVVLAAIFNSLKLLKKSLDEV 189
Query: 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP 360
+ G G AG I + + K+ +VD G+I L
Sbjct: 190 SIVVNGGGSAGLSITRKL-----------LAAGATKVTVVDKFGIINEQEAAQLAPHHLD 238
Query: 361 WAHEHEPVN---NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417
A L DA++ I IG S E I MA +P+I A++NP
Sbjct: 239 IAKVTNREFKSGTLEDALE--GADIFIGVS-APGVLKAEWISKMA---ARPVIFAMANPI 292
Query: 418 SQSECTAEEAYTWSKGRAIFASG-SPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGA 476
E +EA G I +G S F P Q NN FPG G + + A
Sbjct: 293 --PEIYPDEAL--EAGAYIVGTGRSDF-----------PNQINNVLAFPGIFRGALDARA 337
Query: 477 IRVHDDMLLAASEALAKQVTEENFEKGLIYP-PFSNIRKISANIAANVAAKAYELGVATR 535
+ +M +AA++ +A V ++ I P F +A +V + +
Sbjct: 338 KTITVEMQIAAAKGIASLVPDDALSTTNIIPDAF-KEGVAEI-VAKSVRSVVLKSEGHHH 395
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} Length = 487 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 1e-41
Identities = 118/430 (27%), Positives = 169/430 (39%), Gaps = 86/430 (20%)
Query: 135 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 194
YTP V I +G V VV+D R+L
Sbjct: 61 FNAYYTPGVSRISTN---IRDNNDSSL-FYSLRGNF-------------VGVVSDSTRVL 103
Query: 195 GLGDLGCQGMGIPV--GKLALYTALGGI--------RPSAEYAELLDEFMSAVKQ---NY 241
G GD+ G G+ V GK L LGGI + E D + V++ +
Sbjct: 104 GDGDVTPPG-GLGVMEGKALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQHTF 162
Query: 242 GEKVLIQFEDFANHNAFELLAKYGTTHL-------VFNDDIQGTASVVLAGVVAALKLIG 294
G I ED + N +++L L V++DD QGTASV LAG++ ALKL+
Sbjct: 163 GA---INLEDISQPNCYKILDV-----LRESCDIPVWHDDQQGTASVTLAGLLNALKLVK 214
Query: 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354
+ E R +F+GAG + T LI A KKI + DSKG + + R+D
Sbjct: 215 KDIHECRMVFIGAGSSNTTCLRLI-----VTAGAD----PKKIVMFDSKGSLHNGREDIK 265
Query: 355 QHFKKPWAHE------HEPVNNLLDAVKVIKPTILIG-SSGVGRTFTKEVIEAMASFNEK 407
+ + E ++ +A +LI S+ E I++M EK
Sbjct: 266 KDTRFYRKWEICETTNPSKFGSIAEACV--GADVLISLSTPGPGVVKAEWIKSMG---EK 320
Query: 408 PLILALSNPTSQSECTAEEAYTWSKGRAIFASG-SPFDPFEYNGKVFVPGQANNAYIFPG 466
P++ +NP E EA G I A+G F P Q NN+ FPG
Sbjct: 321 PIVFCCANPV--PEIYPYEAK--EAGAYIVATGRGDF-----------PNQVNNSVGFPG 365
Query: 467 FGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYP-PFSNIRKISANIAANVAA 525
G +I A ++ D+M +AAS ALA+ + I AA+VA
Sbjct: 366 ILKGALIVRARKITDNMAIAASRALAEFAEKRGINPDNIIGTMD-EPGIFPK-EAADVAM 423
Query: 526 KAYELGVATR 535
+A + GVA
Sbjct: 424 QAIKDGVARV 433
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* Length = 388 | Back alignment and structure |
|---|
Score = 128 bits (324), Expect = 1e-32
Identities = 111/414 (26%), Positives = 164/414 (39%), Gaps = 86/414 (20%)
Query: 135 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 194
L ++YTP V + + P+ Y + V VV+DG +L
Sbjct: 40 LSLLYTPGVADVARA---CAEDPEKTY-VYTSRWNT-------------VAVVSDGSAVL 82
Query: 195 GLGDLGCQGMGIPV--GKLALYTALGGIR--PSAEYAELLDEFMSAVKQ---NYGEKVLI 247
GLG++G G +PV GK L+ A I P ++ +S VK ++G I
Sbjct: 83 GLGNIGPYG-ALPVMEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLEPSFGG---I 138
Query: 248 QFEDFANHNAFELLAKYGTTHL-------VFNDDIQGTASVVLAGVVAALKLIGGTLAEH 300
ED F +L + L VF+DD QGTA VV A + ALKL + E
Sbjct: 139 NLEDIGAPKCFRILQR-----LSEEMNIPVFHDDQQGTAVVVSAAFLNALKLTEKKIEEV 193
Query: 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS-LQHFKK 359
+ + G G AG I + + ++ K + VD KG++ + ++ L +
Sbjct: 194 KVVVNGIGAAGYNIVKFL-----------LDLGVKNVVAVDRKGILNENDPETCLNEYHL 242
Query: 360 PWAHEHEPVNNLLDAVKVIKPT-ILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 418
A P D ++ IG S G E I+ M+ KP+I AL+NP
Sbjct: 243 EIARITNPERLSGDLETALEGADFFIGVS-RGNILKPEWIKKMS---RKPVIFALANPV- 297
Query: 419 QSECTAEEAYTWSKGRAIFASG-SPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAI 477
E E A G I A+G S P Q NN FPG ++ GA+
Sbjct: 298 -PEIDPELAR--EAGAFIVATGRSDH-----------PNQVNNLLAFPG-----IMKGAV 338
Query: 478 RVH----DDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKA 527
+MLL+A EA+A+ E + +I F K+ N+ V A
Sbjct: 339 EKRSKITKNMLLSAVEAIARSCEPE--PERIIPEAFD--MKVHLNVYTAVKGSA 388
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* Length = 439 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-32
Identities = 122/425 (28%), Positives = 183/425 (43%), Gaps = 82/425 (19%)
Query: 135 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 194
L + YTP V E C++ I R P +Y KG + V VV+DG RIL
Sbjct: 34 LTLAYTPGVAEPCKE---IARDPGKVY-EYTSKGNL-------------VAVVSDGSRIL 76
Query: 195 GLGDLGCQGMGIPV--GKLALYTALGGIRPSAEYAEL----LDEFMSAVKQ---NYGEKV 245
GLG++G G+PV GK L+ GG+ A + ++F+ VK +G
Sbjct: 77 GLGNIGPLA-GLPVMEGKALLFKRFGGV--DAFPIMIKEQEPNKFIDIVKAIAPTFGG-- 131
Query: 246 LIQFEDFANHNAFELLAKYGTTHL-------VFNDDIQGTASVVLAGVVAALKLIGGTLA 298
I ED A+ F +L + L VF+DD QGTA+VVLAG++ ALK++G ++
Sbjct: 132 -INLEDIASPKCFYILER-----LREELDIPVFHDDQQGTAAVVLAGLLNALKVVGKKIS 185
Query: 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD---SKGLIVSSRKDS-- 353
E GAG AG ++ + + + +V+ K I++S D
Sbjct: 186 EITLALFGAGAAGFATLRIL-----TEAGVK----PENVRVVELVNGKPRILTSDLDLEK 236
Query: 354 LQHFKKPWAHEHEPVNNLLDAVKVIKPT-ILIG-SSGVGRTFTKEVIEAMASFNEKPLIL 411
L ++ + N + +K +LI + + IE M E ++
Sbjct: 237 LFPYRGWLLKKTNGENIEGGPQEALKDADVLISFTRPGPGVIKPQWIEKMN---EDAIVF 293
Query: 412 ALSNPTSQSECTAEEAYTWSKGRAIFASG-SPFDPFEYNGKVFVPGQANNAYIFPGFGLG 470
L+NP E EEA G I A+G S + P Q NN FPG G
Sbjct: 294 PLANPV--PEILPEEAK--KAGARIVATGRSDY-----------PNQINNLLGFPGIFRG 338
Query: 471 LVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYEL 530
+ A + D M++AA++A+A V E + E +I P N + A VA +A +
Sbjct: 339 ALDVRARTITDSMIIAAAKAIASIVEEPSEEN-IIPSPL-NPIVYAR-EARAVAEEAMKE 395
Query: 531 GVATR 535
GVA
Sbjct: 396 GVART 400
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 8e-08
Identities = 69/503 (13%), Positives = 145/503 (28%), Gaps = 163/503 (32%)
Query: 11 GASVL------DFDSKSTVEGGVEDVY----GEDRATEDQLVTPWTIS--VASGYCLLRD 58
G + + + + ++ + + + E L + + + D
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 59 ----PRHNKGLAFTEKER---DAHYLRGLL------PPAVI------SQQL---QEKKLM 96
+ E R Y LL + L + K++
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 97 NSI---RQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSI 153
+ + + L + + +E + L K L ++L P E +
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPDE-VKSLLLKYLDCRPQDL-PR-------EVLT--TN- 326
Query: 154 FRRPQGLYISLKEKGKILEVLKNWP------------------ERSIQVIVVTDGERILG 195
P +S+ I E +++ E S+ V+ + ++
Sbjct: 327 ---P--RRLSI-----IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 196 LGDLGC--QGMGIPVGKLALYTALGGIRPSAEYAELLDEFM--SAVKQNYGEKVL----I 247
L IP L+L + ++ ++++ S V++ E + I
Sbjct: 377 --RLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSI 431
Query: 248 QFE-------DFANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAA-----LKLI-- 293
E ++A H ++ Y +DD+ L + LK I
Sbjct: 432 YLELKVKLENEYALHR--SIVDHYNIPKTFDSDDL---IPPYLDQYFYSHIGHHLKNIEH 486
Query: 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 353
+ R +FL + LE +KI + S ++
Sbjct: 487 PERMTLFRMVFL----------DFRFLE-------------QKIRHDSTAWNASGSILNT 523
Query: 354 LQHFK--KPWAHEHEP-----VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE 406
LQ K KP+ +++P VN +LD + I+ ++ +++
Sbjct: 524 LQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-------TDLLR------- 569
Query: 407 KPLILALSNPTSQSECTAEEAYT 429
+AL EEA+
Sbjct: 570 ----IALMAEDEA---IFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.3 bits (114), Expect = 7e-06
Identities = 56/443 (12%), Positives = 132/443 (29%), Gaps = 139/443 (31%)
Query: 143 VGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ 202
GE +Y I + ++ + + ++ K+ ++ + + I+ D
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS-------ILSKEEIDHIIMSKD---- 59
Query: 203 GMGIPVGKLALYTALGGIRPSAEYAELLDEFM-SAVKQNYG-------------EKVLIQ 248
+ E E++ +F+ ++ NY +
Sbjct: 60 ------AVSGTLRLFWTLLSKQE--EMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 249 FEDFAN--HNAFELLAKYG----------TTHLVFNDDIQGTASVVLAGVVAALK--LIG 294
+ + + +N ++ AKY L+ +++ +V++ GV+ + K +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALL---ELRPAKNVLIDGVLGSGKTWVAL 168
Query: 295 GTLAEHRFL-------F-LGAGEAGTGIAELIALE-----ISKQTKAPVEETRKKICLVD 341
++ F L + L L+ I + + +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK---- 224
Query: 342 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNL--LDAV---KVIKP-----TILIGSSGVGR 391
L + S + L+ K +E N L L V K IL+
Sbjct: 225 ---LRIHSIQAELRRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKILL------T 271
Query: 392 TFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS---GSPFDPFEY 448
T K+V + +++ + L + T T + +++ P D
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMT----------LTPDEVKSLLLKYLDCRPQD---- 317
Query: 449 NGKVFVPGQANNAYIFPGFGLGLVIS--GAIRVHDDM----------------LLAAS-E 489
+P + P +S + D + ++ +S
Sbjct: 318 -----LPREVLT--TNP-----RRLSIIAE-SIRDGLATWDNWKHVNCDKLTTIIESSLN 364
Query: 490 ALAKQVTEENFEKGLIYPPFSNI 512
L + F++ ++PP ++I
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHI 387
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 3e-05
Identities = 62/398 (15%), Positives = 120/398 (30%), Gaps = 133/398 (33%)
Query: 14 VLD----------FDSKSTVEGGVEDVYGEDRATEDQLVTPWTISVA-----SGYCLLRD 58
VL F+ + L+T V + +
Sbjct: 249 VLLNVQNAKAWNAFNLSCKI-----------------LLTTRFKQVTDFLSAATTTHISL 291
Query: 59 PRHNKGLAFTEKERD---AHYLR---GLLPP----------AVISQQLQEKKLM-NSIRQ 101
H+ T E YL LP ++I++ +++ ++ +
Sbjct: 292 DHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKH 349
Query: 102 YEVPLQKYVAMME-----LEERNER-LFYKLLI--DNV---EELLPVVYTPTVGE----- 145
K ++E LE R +F +L + + LL +++ +
Sbjct: 350 VN--CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV 407
Query: 146 --ACQKYGSIFRRPQ-------GLYISLKEKGKILEVLKNWPERSI----QVIVVTDGER 192
KY + ++P+ +Y+ LK K + L RSI + D +
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL----HRSIVDHYNIPKTFDSD- 462
Query: 193 ILGLGDLGCQGMGIPVGKLALYTALGGIRPSAEYAELLDEFMSAVKQNYGEKVLIQFEDF 252
+ P Y+ +G + E+ E + F V F DF
Sbjct: 463 ----------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLF---------RMV---FLDF 500
Query: 253 ANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEH-----RFL---- 303
F L K + +D AS + + LK + ++ R +
Sbjct: 501 ----RF-LEQK------IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549
Query: 304 -FLGAGEAGTGIAE---LIALEISKQTKAPVEETRKKI 337
FL E ++ L+ + + + +A EE K++
Sbjct: 550 DFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| 1gq2_A | 555 | Malic enzyme; oxidoreductase, pigeon liver, NADP-d | 100.0 | |
| 1o0s_A | 605 | NAD-ME, NAD-dependent malic enzyme; oxidoreductase | 100.0 | |
| 1pj3_A | 564 | NAD-dependent malic enzyme, mitochondrial; oxidati | 100.0 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 100.0 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 100.0 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 100.0 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 100.0 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 98.79 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 98.75 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.99 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.88 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 97.88 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 97.06 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 96.7 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 96.67 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 96.35 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 96.1 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 96.07 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 96.05 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 95.91 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 95.72 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 95.7 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 95.63 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 95.38 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 95.34 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 95.31 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 95.24 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 95.21 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 95.18 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 95.12 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.09 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 95.06 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 95.04 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 94.97 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 94.92 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 94.79 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 94.76 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 94.62 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 94.38 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 94.35 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 94.29 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 94.18 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 94.12 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 94.05 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 94.02 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 93.97 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 93.91 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 93.24 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 93.0 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 92.87 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 92.78 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 92.76 | |
| 3u95_A | 477 | Glycoside hydrolase, family 4; hydrolysis, cytosol | 92.69 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 92.6 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 92.6 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 92.56 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 92.55 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 92.43 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 92.39 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 92.29 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 92.18 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 92.14 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 91.99 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 91.97 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 91.9 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 91.79 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 91.78 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 91.76 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 91.35 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 91.25 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 91.12 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 91.06 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 90.95 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 90.92 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 90.88 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 90.87 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 90.67 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 90.65 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 90.64 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 90.64 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 90.62 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 90.48 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 90.16 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 89.92 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 89.88 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 89.69 | |
| 3h5n_A | 353 | MCCB protein; ubiquitin-activating enzyme, microci | 89.68 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 89.68 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 89.62 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 89.62 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 89.17 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 89.14 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 89.08 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 89.04 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 88.96 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 88.9 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 88.81 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 88.8 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 88.73 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 88.63 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 88.51 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 88.4 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 88.31 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 88.16 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 87.93 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 87.86 | |
| 3h8v_A | 292 | Ubiquitin-like modifier-activating enzyme 5; rossm | 87.75 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 87.69 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 87.64 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 87.57 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 87.54 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 87.38 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 87.23 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 87.13 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 87.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 86.85 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 86.65 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 86.43 | |
| 1up7_A | 417 | 6-phospho-beta-glucosidase; hydrolase, family4 hyd | 86.3 | |
| 1hyu_A | 521 | AHPF, alkyl hydroperoxide reductase subunit F; thi | 86.24 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 86.21 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 86.16 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 86.16 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 85.98 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 85.9 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 85.85 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 85.82 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 85.79 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 85.77 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 85.76 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 85.71 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 85.64 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 85.61 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 85.47 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 85.46 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 85.2 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 85.19 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 85.13 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 84.96 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 84.83 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 84.61 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 84.57 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 84.39 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 84.27 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 83.62 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 83.41 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 83.4 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 83.4 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 83.34 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 83.15 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 83.07 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 83.03 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 83.02 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 83.01 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 83.0 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 82.99 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 82.87 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 82.79 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 82.73 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 82.66 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 82.39 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 82.02 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 81.93 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 81.89 | |
| 1hye_A | 313 | L-lactate/malate dehydrogenase; nucleotide binding | 81.59 | |
| 1y8q_A | 346 | Ubiquitin-like 1 activating enzyme E1A; SUMO, hete | 81.56 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 81.41 | |
| 1y7t_A | 327 | Malate dehydrogenase; NAD-dependent-MDH-NADPH comp | 81.09 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 81.07 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 81.01 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 80.9 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 80.67 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 80.66 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 80.26 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 80.04 |
| >1gq2_A Malic enzyme; oxidoreductase, pigeon liver, NADP-dependent, NAD-NADP selectivity, decarboxylase, malate, Mn2+; HET: NAP; 2.5A {Columba livia} SCOP: c.2.1.7 c.58.1.3 PDB: 2aw5_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-189 Score=1516.43 Aligned_cols=508 Identities=51% Similarity=0.910 Sum_probs=499.1
Q ss_pred ccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHHhhh
Q 008629 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 129 (559)
Q Consensus 50 ~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 129 (559)
++|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++++|+||+||++||++||+||||++++
T Consensus 1 ~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~ 80 (555)
T 1gq2_A 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTS 80 (555)
T ss_dssp CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CChhhhccCCcccCCCCCCHHHHHHCCCccCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhcCcceeeehhhHhh
Confidence 37999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccchhH
Q 008629 130 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 209 (559)
Q Consensus 130 ~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG 209 (559)
|++|+|||+||||||++|++||+|||+|+|+|+|++|+|+++++++|||.++|+|||||||||||||||+|++|||||||
T Consensus 81 ~~~e~lpivYTP~V~~ac~~~s~i~~~p~g~yis~~d~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g~~ipvG 160 (555)
T 1gq2_A 81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVG 160 (555)
T ss_dssp THHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHH
T ss_pred hHHHhcCcccCchHHHHHHHHHHHhcChhhhhcccCCHHHHHHHHhcCCCCCcEEEEEEccccccccCCCCCCccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcH
Q 008629 210 KLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 257 (559)
Q Consensus 210 Kl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~A 257 (559)
|++|||+||||||.+ +|++|+||||++|+++|||+++||||||+++||
T Consensus 161 Kl~Ly~~~aGIdP~~~lPI~LD~GTnn~~LL~DplYlG~r~~Rv~g~eyd~fvdefv~av~~~fGp~~~I~~EDf~~~~a 240 (555)
T 1gq2_A 161 KLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANA 240 (555)
T ss_dssp HHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred HHHHhHhccCCChhheeeeEeecCCCchhhcCCCccCCcCCCCCchHHHHHHHHHHHHHHHHhhCCCcEEeecccCCccH
Confidence 999999999999887 799999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccE
Q 008629 258 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 337 (559)
Q Consensus 258 f~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i 337 (559)
|+||+|||++||||||||||||+|+||||+||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+|||+++|
T Consensus 241 f~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAg~gia~ll~~~~~~~-G~~~eeA~~~i 319 (555)
T 1gq2_A 241 FRLLHKYRNKYCTFNDDIQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAIKRI 319 (555)
T ss_dssp HHHHHHHTTTSEEEETTTHHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHHH-TCCHHHHHTTE
T ss_pred HHHHHHHhccCCEecCccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHc-CCChHHHhCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999985 99999999999
Q ss_pred EEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 338 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 338 ~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
||||++|||+++|. +|+++|++||++.++.++|+|||+.+|||||||+|+++|+||+|+||+|+++|+|||||||||||
T Consensus 320 ~~~D~~Gli~~~r~-~l~~~k~~~A~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSNPt 398 (555)
T 1gq2_A 320 WMVDSKGLIVKGRA-SLTPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPT 398 (555)
T ss_dssp EEEETTEECBTTCS-SCCTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSG
T ss_pred EEEECCCeeeCCCC-CchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEEECCCCC
Confidence 99999999999996 49999999999877778999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHhcccCCcEEEeeCCCCCCcee-CCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 008629 418 SQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 418 ~~~EctpedA~~wt~G~aifAsGSPF~pv~~-~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
+++||+||||++||+|+|||||||||+||+| +||+++||||||+|+|||||||+++++|++|||+|+++||+|||++++
T Consensus 399 ~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~Grs~~pnQ~NN~liFPGi~~Gal~~~A~~Itd~M~~aAA~alA~~v~ 478 (555)
T 1gq2_A 399 SKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVS 478 (555)
T ss_dssp GGCSSCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCC
T ss_pred CccCcCHHHHHHhccCCEEEEeCCCCCCeeecCCcEeccccccceeeccchhhhhHhcCCeECCHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999 999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 497 EENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 497 ~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
++++..+.|||++++||+||.+||.||+++|+++|+|+..++|+|+.+|++++||+|+|++|+
T Consensus 479 ~~~~~~~~i~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~~~~P~Y~~~~ 541 (555)
T 1gq2_A 479 EENLQEGRLYPPLVTIQQVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCFV 541 (555)
T ss_dssp HHHHHHTCSSCCGGGHHHHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHTTSCCCSCCCCS
T ss_pred cccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhccCCCCCCcc
Confidence 999999999999999999999999999999999999988788899999999999999999873
|
| >1o0s_A NAD-ME, NAD-dependent malic enzyme; oxidoreductase, oxidative decarboxylase, rossmann fold, MAla dehydrogenase; HET: NAI; 2.00A {Ascaris suum} SCOP: c.2.1.7 c.58.1.3 PDB: 1llq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-188 Score=1519.21 Aligned_cols=512 Identities=46% Similarity=0.825 Sum_probs=502.0
Q ss_pred ccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHH
Q 008629 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (559)
Q Consensus 46 ~~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 125 (559)
..+..+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++++|+||+||++||++||+||||
T Consensus 33 ~~~~~~G~~lL~~p~~NKGtAFt~~ER~~l~L~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfyr 112 (605)
T 1o0s_A 33 VTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYR 112 (605)
T ss_dssp CCCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHCHHHHHH
T ss_pred cccCcchHHHhCCCcccCCCCCCHHHHHHCCCCcCCCCCcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHhhcccchhhhh
Confidence 45568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCc--chHHHHHhcCCCCCeeEEEEecCceecccCCCCCcc
Q 008629 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG 203 (559)
Q Consensus 126 ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~--g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G 203 (559)
++++|++|+|||+||||||++|++||+|||+|+|+|+|++|+ |+++++|+|||.++|+|||||||||||||||||++|
T Consensus 113 ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~g~yis~~d~~~~~i~~~l~n~~~~~~~v~VVTDG~~ILGLGD~G~~g 192 (605)
T 1o0s_A 113 VVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYG 192 (605)
T ss_dssp HHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGG
T ss_pred hhhhCHHHhCCeeeCccHHHHHHHHHHHhcChHhhhccccCcccchHHHHHhcCCCCCceEEEEEccccceecCCCCCCc
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeecc
Q 008629 204 MGIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFED 251 (559)
Q Consensus 204 mgI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~ED 251 (559)
|||||||++|||+||||||.+ +|++|+||||++|+++|||+++|||||
T Consensus 193 ~~ipvGKl~Ly~~~aGIdP~~~lPI~LDvGTnne~LL~DPlYlG~r~~Rv~g~~Yd~fvdefv~av~~~fGp~~~I~~ED 272 (605)
T 1o0s_A 193 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFED 272 (605)
T ss_dssp GHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CcceeeHHHHHHhccCCChhheeeeEeccCCChhhhccCCcccCcCCCCCChHHHHHHHHHHHHHHHHHhCCCcEeeHhh
Confidence 999999999999999999876 799999999999999999999999999
Q ss_pred CCCCcHHHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChh
Q 008629 252 FANHNAFELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVE 331 (559)
Q Consensus 252 f~~~~Af~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~e 331 (559)
|+++|||+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|++ .|+|+|
T Consensus 273 f~~p~af~il~ryr~~ipvFnDDiqGTA~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~-~Gl~~e 351 (605)
T 1o0s_A 273 FANPNAFRLLDKYQDKYTMFNDDIQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQN-EGISKE 351 (605)
T ss_dssp CCHHHHHHHHHHHTTTSEEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHT-TTCCHH
T ss_pred cCCccHHHHHHHhccCCCeeCcccchHHHHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHH-cCCChh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 499999
Q ss_pred hhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEE
Q 008629 332 ETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 332 eA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIF 411 (559)
||+++|||||++|||+++|. +|+++|++||++.++.++|+|||+.+|||||||+|+++|+||+|+||+|+++|+|||||
T Consensus 352 eA~~~i~~vD~~Gli~~~r~-~l~~~k~~~A~~~~~~~~L~eav~~vkpdVlIG~S~~~g~ft~evv~~Ma~~~~~PIIF 430 (605)
T 1o0s_A 352 EACNRIYLMDIDGLVTKNRK-EMNPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIF 430 (605)
T ss_dssp HHHHTEEEEETTEECBTTCS-SCCGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEE
T ss_pred hhhCeEEEEECCCceeCCCC-CchHHHHHHHhhcCCCCCHHHHHhhcCCCEEEEecCCCCCCCHHHHHHHHhcCCCCEEE
Confidence 99999999999999999996 49999999999877778999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHH
Q 008629 412 ALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEAL 491 (559)
Q Consensus 412 aLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aL 491 (559)
||||||+++||+||||++||+|+|||||||||+||+|+||+++||||||+|+|||||||+++++|++|||+|+++||+||
T Consensus 431 aLSNPt~~aE~~pe~a~~~t~G~aivATGspF~pV~~~Grs~~pnQ~NN~liFPGi~lGal~~~A~~Itd~M~~aAA~aL 510 (605)
T 1o0s_A 431 ALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKV 510 (605)
T ss_dssp ECCSSGGGCSSCHHHHHHTTTSCCEEEESSCCCCEEETTEEECCEECCGGGTHHHHHHHHHHHTBSCCCHHHHHHHHHHH
T ss_pred ECCCCCCCcCcCHHHHHhhccCCEEEEECCCCCCeeECCEEeccccccceeeccchhhhhhhcCCeEcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 492 AKQVTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 492 A~~v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
|++++++++..+.|||++++||+||.+||.||+++|+++|+|+..++|+|+.+|++++||+|+|++|+
T Consensus 511 A~~v~~~~~~~~~i~P~~~dir~vs~~VA~AVa~~A~~~GvA~~~~~~~d~~~~i~~~~w~P~Y~~~~ 578 (605)
T 1o0s_A 511 ASCVTEDSLKVGRVYPQLKEIREISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEELI 578 (605)
T ss_dssp HHTCCHHHHTTTCCSCCGGGHHHHHHHHHHHHHHHHHHTTCBCSSSCCSCHHHHHHHHSCCCSCCCCS
T ss_pred HhhcccccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhccCCCCCccc
Confidence 99999999999999999999999999999999999999999988788899999999999999999873
|
| >1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase, oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP: c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A* 1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-188 Score=1513.67 Aligned_cols=509 Identities=49% Similarity=0.898 Sum_probs=499.5
Q ss_pred ccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHHhhh
Q 008629 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 129 (559)
Q Consensus 50 ~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 129 (559)
.+|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|+|.||++++++|+||+||++||++||+||||++++
T Consensus 3 ~~G~~lL~~p~~NKGtAFt~~ER~~l~l~GLLPp~v~t~e~Q~~r~~~~~~~~~~~l~k~~~L~~L~~~Ne~Lfy~ll~~ 82 (564)
T 1pj3_A 3 EKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQD 82 (564)
T ss_dssp CCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CchHHHhCCCcccCCCCCCHHHHHhCCCCcCCCCCcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHhhcccceeehhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccchhH
Q 008629 130 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 209 (559)
Q Consensus 130 ~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG 209 (559)
|++|+|||+||||||++|++||+|||+|+|+|+|++|+++|+++|+|||.++|+|||||||||||||||+|++||+||||
T Consensus 83 ~~~e~lpivYTP~Vg~ac~~~s~i~~~p~g~ylsi~d~~~i~~~l~n~~~~~v~v~VVTDG~~ILGLGD~G~~gm~ipvG 162 (564)
T 1pj3_A 83 DIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVG 162 (564)
T ss_dssp CHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHH
T ss_pred CHHHhCCeeeCccHHHHHHHHHHHhcCcccccccccCHHHHHHHHHhCCCCCceEEEEEcccccccCCCCCCCcccceeh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcH
Q 008629 210 KLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 257 (559)
Q Consensus 210 Kl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~A 257 (559)
|++|||+||||||.+ +|++|+||||++|+++|||+++||||||+++||
T Consensus 163 Kl~Ly~~~aGIdP~~~lPI~lDvgTnn~~LL~DPlYlG~r~~Rv~g~eYd~fvdefv~av~~~fG~~~~I~~EDf~~~~a 242 (564)
T 1pj3_A 163 KLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNA 242 (564)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred HHHHHHhccCCChhheeeeEeecCcCchhhccCCcccCcCCCCCchhhHHHHHHHHHHHHHHHcCCCcEEeehhcCCccH
Confidence 999999999999887 799999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCeeecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccE
Q 008629 258 FELLAKYGTTHLVFNDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKI 337 (559)
Q Consensus 258 f~lL~ryr~~~~~FnDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i 337 (559)
|+||+|||++||||||||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+.+|+++ |+|+|||+++|
T Consensus 243 f~il~ryr~~ipvFnDDiqGTa~V~lAgllnAlki~gk~l~d~riv~~GAGaAgigia~ll~~~m~~~-Gl~~eeA~~~i 321 (564)
T 1pj3_A 243 FRFLRKYREKYCTFNDDIQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVEN-GLSEQEAQKKI 321 (564)
T ss_dssp HHHHHHHTTTSSEEEHHHHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHHT-TCCHHHHHHTE
T ss_pred HHHHHHhccCCCEeCCCCchHHHHHHHHHHHHHHHhCCcHhHcEEEEeCCCHHHHHHHHHHHHHHHHc-CCChHHhhCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999984 99999999999
Q ss_pred EEEcccCccccCCcCCCchhchhhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 338 CLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 338 ~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
||||++|||+++|.++|+++|++||++.++. ++|+|||+.+|||||||+|+++|+||||+||+|+++|+|||||||||
T Consensus 322 ~~~D~~Gli~~~r~~~l~~~k~~~A~~~~~~~~~~L~eav~~vkp~vlIG~S~~~g~ft~evv~~Ma~~~~~PIIFaLSN 401 (564)
T 1pj3_A 322 WMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSN 401 (564)
T ss_dssp EEEETTEECBTTCSSCCCTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCS
T ss_pred EEEeCCCeEECCCcccchHHHHHHHHhcCccccCCHHHHHhhcCCCEEEEeCCCCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 9999999999999445999999999987766 79999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCHHHHhcccCCcEEEeeCCCCCCcee-CCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhc
Q 008629 416 PTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQ 494 (559)
Q Consensus 416 Pt~~~EctpedA~~wt~G~aifAsGSPF~pv~~-~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~ 494 (559)
||+++||+||||++||+|+|||||||||+||+| +||+|+||||||+|+|||||||+++++|++|||+|+++||+|||++
T Consensus 402 Pt~~aE~~pe~a~~~t~G~aivATGspf~pv~~~~G~~~~pnQ~NN~liFPGi~~Gal~~~A~~Itd~M~~aAA~aLA~~ 481 (564)
T 1pj3_A 402 PTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQ 481 (564)
T ss_dssp SGGGCSCCHHHHHHHTTTCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHTT
T ss_pred CCCccCcCHHHHHhhccCCEEEEeCCCCCceeecCCceecccccceeeeccchhhhhHhcCCeECCHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred cCccccCCCcccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 495 VTEENFEKGLIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 495 v~~~~~~~~~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
++++++..+.|||+++++|+||.+||.||+++|+++|+|+..++|+|+.+|++++||+|.|++|+
T Consensus 482 v~~~~~~~~~i~P~~~~~r~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~~~~p~Y~~~~ 546 (564)
T 1pj3_A 482 LTDEELAQGRLYPPLANIQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSLL 546 (564)
T ss_dssp CCHHHHHTTCSSCCGGGHHHHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHHTCCCCSCCCCC
T ss_pred cccccCCCCcccCCcchhhHhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHHhhCCCCCCcc
Confidence 99999999999999999999999999999999999999988788899999999999999999873
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-117 Score=943.83 Aligned_cols=371 Identities=31% Similarity=0.381 Sum_probs=334.3
Q ss_pred cccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCC-ccccchhHH
Q 008629 132 EELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGC-QGMGIPVGK 210 (559)
Q Consensus 132 ~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~-~GmgI~iGK 210 (559)
.+.|||+||||||++|++|+ +|+++++++..+| ++|||||||||||||||+|+ +||||||||
T Consensus 58 ~~dLslaYTPgVa~~c~~i~-------------~dp~~~~~yt~kg----n~VaVVTDG~aILGLGDiG~~agmpImeGK 120 (487)
T 3nv9_A 58 FNWFNAYYTPGVSRISTNIR-------------DNNDSSLFYSLRG----NFVGVVSDSTRVLGDGDVTPPGGLGVMEGK 120 (487)
T ss_dssp GGGHHHHSTTTHHHHHHHHH-------------HCGGGHHHHSGGG----GEEEEEECSSSBGGGBCCCGGGGHHHHHHH
T ss_pred HHHCeeeeCcchHHHHHHHH-------------hChHHHhhhcccC----CEEEEEEcCceeeeccccccccCCchhhhH
Confidence 35699999999999999986 4667777766666 58999999999999999999 589999999
Q ss_pred HHHHhHhcCCCCCc-----c---hhHhHHHHHHHHHHhhCCCe-eeeeccCCCCcHHHHHHHHcC--CCCeeecCCcchh
Q 008629 211 LALYTALGGIRPSA-----E---YAELLDEFMSAVKQNYGEKV-LIQFEDFANHNAFELLAKYGT--THLVFNDDIQGTA 279 (559)
Q Consensus 211 l~LY~a~gGI~P~~-----~---y~~~vdefv~av~~~fGp~~-lIq~EDf~~~~Af~lL~ryr~--~~~~FnDDiQGTa 279 (559)
++|||+|||||..+ - -.+.+||||++|+..| |+. .||||||++||||+||+|||+ +||||||||||||
T Consensus 121 l~Lyk~~aGId~lPI~LD~gt~~~~~d~defve~v~~~~-P~fG~InlEDf~ap~af~il~ryr~~~~ipvFnDD~qGTA 199 (487)
T 3nv9_A 121 ALLMKYLGGIDAVPICIDSKNKEGKNDPDAVIEFVQRIQ-HTFGAINLEDISQPNCYKILDVLRESCDIPVWHDDQQGTA 199 (487)
T ss_dssp HHHHHHHHCCEEEEEECCCBCTTSCBCHHHHHHHHHHHG-GGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEETTTHHHH
T ss_pred HHHHHhcCCCceeeeEEeCCCccccCCHHHHHHHHHHhC-CCCCeecHhhcCCchHHHHHHHHHhhccCCccccccchHH
Confidence 99999999999877 1 1114666666666655 443 599999999999999999998 7999999999999
Q ss_pred HHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc----
Q 008629 280 SVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ---- 355 (559)
Q Consensus 280 aV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~---- 355 (559)
+|+||||+||+|++|++|+||||||+|||+||+|||+||+. .|+++ ++|||+|++|||+++|.+ |+
T Consensus 200 ~V~lAgllnAlki~gk~l~d~riV~~GAGaAGigia~ll~~-----~G~~~----~~i~l~D~~Gli~~~R~~-l~~~~~ 269 (487)
T 3nv9_A 200 SVTLAGLLNALKLVKKDIHECRMVFIGAGSSNTTCLRLIVT-----AGADP----KKIVMFDSKGSLHNGRED-IKKDTR 269 (487)
T ss_dssp HHHHHHHHHHHHHHTCCGGGCCEEEECCSHHHHHHHHHHHH-----TTCCG----GGEEEEETTEECCTTCHH-HHHCGG
T ss_pred HHHHHHHHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHH-----cCCCc----ccEEEEeccccccCCcch-hhhhcc
Confidence 99999999999999999999999999999999999999975 49986 899999999999999954 63
Q ss_pred -hhchhhccccC--CCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 356 -HFKKPWAHEHE--PVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 356 -~~k~~fA~~~~--~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
++|.+||++.. +..+|+|||+. +|||||+|++ +|+||+|+||+|+ +||||||||||| +||+||||++
T Consensus 270 ~~~k~~~A~~~n~~~~~~L~eav~~--adVlIG~S~~~pg~ft~e~V~~Ma---~~PIIFaLSNPt--pEi~pe~A~~-- 340 (487)
T 3nv9_A 270 FYRKWEICETTNPSKFGSIAEACVG--ADVLISLSTPGPGVVKAEWIKSMG---EKPIVFCCANPV--PEIYPYEAKE-- 340 (487)
T ss_dssp GHHHHHHHHHSCTTCCCSHHHHHTT--CSEEEECCCSSCCCCCHHHHHTSC---SSCEEEECCSSS--CSSCHHHHHH--
T ss_pred cHHHHHHHHhcccccCCCHHHHHhc--CCEEEEecccCCCCCCHHHHHhhc---CCCEEEECCCCC--ccCCHHHHHH--
Confidence 46678888642 45799999997 7999999976 7999999999997 899999999999 7999999998
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
+|+|||||| |+++||||||+|+|||||||+++++|++|||+|+++||++||++++++++..+.|||++++
T Consensus 341 ~G~aIvATG----------rsd~PnQ~NN~liFPGI~~Gal~~~A~~Itd~M~~AAA~ALA~~v~~~~l~~~~i~P~~~d 410 (487)
T 3nv9_A 341 AGAYIVATG----------RGDFPNQVNNSVGFPGILKGALIVRARKITDNMAIAASRALAEFAEKRGINPDNIIGTMDE 410 (487)
T ss_dssp TTCSEEEES----------CTTSSSBCCGGGTHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHTCCBTTBCSCCTTC
T ss_pred hCCEEEEEC----------CCCCcccCcceeEcchhhHHHHHcCCcccCHHHHHHHHHHHHhhCCcccCCCCceeCCccc
Confidence 599999999 4678999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCC-CCchhHHHHHHhCC
Q 008629 512 IRKISANIAANVAAKAYELGVATRL-PRPQNLVKCAESCM 550 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~~~GvA~~~-~~~~d~~~~i~~~m 550 (559)
++||.+||.||+++|+++|+|+.. ++++++.+++++.+
T Consensus 411 -~~Vs~~VA~AVa~aA~~~GvA~~~~~~~~~~~~~~~~~~ 449 (487)
T 3nv9_A 411 -PGIFPKEAADVAMQAIKDGVARVTDLTWQQVYDIAEHDI 449 (487)
T ss_dssp -TTHHHHHHHHHHHHHHHHTCCSCCCCCHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHH
Confidence 789999999999999999999976 67889999998765
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-110 Score=878.30 Aligned_cols=359 Identities=28% Similarity=0.389 Sum_probs=327.6
Q ss_pred hhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCC
Q 008629 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (559)
Q Consensus 121 ~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (559)
.+++++.+++. |+|||+||||||++|++|+ ++| ++++ +|+.++++|+|||||+|||||||+|
T Consensus 23 ~~~~~~~~~~~-~~l~i~YtP~V~~~c~~i~---~~p----------~~v~----~~t~~~~~V~VvTdG~~iLGLGD~G 84 (398)
T 2a9f_A 23 EVQPKVDIKTK-HDLSIAYTPGVASVSSAIA---KDK----------TLAY----DLTTKKNTVAVISDGTAVLGLGDIG 84 (398)
T ss_dssp EEEESSCCSSH-HHHHHHSTTTTHHHHHHHH---HCG----------GGHH----HHSGGGTEEEEEECSSSCTTSCCCC
T ss_pred EEEEecccCCH-HHCeEEECchHHHHHHHHH---hCH----------HHHH----HhcccCCEEEEEECCccccCCCCcc
Confidence 45666677765 5589999999999999987 344 5554 6899999999999999999999999
Q ss_pred Cc-cccchhHHHHHHhHhcCCCCCc--chhHhHHHHHHHHHHhhCCC-eeeeeccCCCCcHHHHHHHHcCC--CCeeecC
Q 008629 201 CQ-GMGIPVGKLALYTALGGIRPSA--EYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNAFELLAKYGTT--HLVFNDD 274 (559)
Q Consensus 201 ~~-GmgI~iGKl~LY~a~gGI~P~~--~y~~~vdefv~av~~~fGp~-~lIq~EDf~~~~Af~lL~ryr~~--~~~FnDD 274 (559)
++ |||||+||+.||++|||||..+ .....+||||++|++.| |. ..||||||+++|||++|+|||++ +||||||
T Consensus 85 ~~aG~pI~eGK~~Lf~~~agid~~pi~Ldv~~~dEfv~~v~~~~-p~F~~I~lED~~~p~~f~il~~~r~~~~ipvf~DD 163 (398)
T 2a9f_A 85 PEAAMPVMEGKAALFKAFAGVDAIPIVLDTKDTEEIISIVKALA-PTFGGINLEDISAPRCFEIEQRLIKECHIPVFHDD 163 (398)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCEEEEEECCCCCHHHHHHHHHHHG-GGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHH
T ss_pred cccCCcchhCHHHHHHhccCCceeeeEeCCCCHHHHHHHHHHcC-CceeEeccccCCChHHHHHHHHhhhcCCcceecch
Confidence 98 9999999999999999999777 23334999999999999 77 89999999999999999999974 9999999
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||++||+|++|++++|+||||+|||+||+|||++++.+ |+ ++||++|++|||+++|.++|
T Consensus 164 iqGTa~V~lAall~al~l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~-----Ga------~~I~v~D~~Gli~~~R~~~L 232 (398)
T 2a9f_A 164 QHGTAIVVLAAIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAA-----GA------TKVTVVDKFGIINEQEAAQL 232 (398)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCTTSCEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEEETTEECCTTCCCSC
T ss_pred hhhHHHHHHHHHHHHHHHhCCCCCccEEEEECCCHHHHHHHHHHHHc-----CC------CeEEEEECCCcccCCccccc
Confidence 99999999999999999999999999999999999999999999875 75 79999999999999993359
Q ss_pred chhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc
Q 008629 355 QHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS 431 (559)
Q Consensus 355 ~~~k~~fA~~~~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt 431 (559)
+++|++||++... ..+|+|+|+. +|+|||+|+ ||+||+|+|++|+ ++|||||||||| |||+||||++|
T Consensus 233 ~~~k~~fa~~~~~~~~~~~L~eav~~--ADV~IG~Sa-pgl~T~EmVk~Ma---~~pIIfalsNPt--~E~~pe~a~~~- 303 (398)
T 2a9f_A 233 APHHLDIAKVTNREFKSGTLEDALEG--ADIFIGVSA-PGVLKAEWISKMA---ARPVIFAMANPI--PEIYPDEALEA- 303 (398)
T ss_dssp CC---CHHHHHSCTTCCCSCSHHHHT--TCSEEECCS-TTCCCHHHHHTSC---SSCEEEECCSSS--CSSCHHHHHTT-
T ss_pred hHHHHHHhhccCcccchhhHHHHhcc--CCEEEecCC-CCCCCHHHHHhhC---CCCEEEECCCCC--ccCCHHHHHHh-
Confidence 9999999987442 4689999997 899999999 8999999999998 899999999999 89999999999
Q ss_pred CCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 432 KGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 432 ~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
|+|||||| |+++|||+||+|+|||||||+++++|++|||+|+++||++||++++++++..++|||++++
T Consensus 304 -g~~i~atG----------rs~~p~Q~NN~~~FPgi~~Gal~~~a~~I~d~m~~aAa~alA~~~~~~~~~~~~i~P~~~~ 372 (398)
T 2a9f_A 304 -GAYIVGTG----------RSDFPNQINNVLAFPGIFRGALDARAKTITVEMQIAAAKGIASLVPDDALSTTNIIPDAFK 372 (398)
T ss_dssp -TCSEEEES----------CTTSSSBCCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCSSCSSCCSCCSCSSTT
T ss_pred -CCeEEEeC----------CCCCCCcCCceeEcchHHHHHHHcCCcCCCHHHHHHHHHHHHhcCCcccCCCCccCCCCCc
Confidence 99999999 6899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHh
Q 008629 512 IRKISANIAANVAAKAYEL 530 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~~~ 530 (559)
|+||.+||.||+++|++.
T Consensus 373 -~~v~~~VA~aVa~~A~~~ 390 (398)
T 2a9f_A 373 -EGVAEIVAKSVRSVVLKS 390 (398)
T ss_dssp -HHHHHHHTTTTCCCCC--
T ss_pred -chhHHHHHHHHHHHHHHh
Confidence 999999999999999864
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-105 Score=836.36 Aligned_cols=352 Identities=30% Similarity=0.419 Sum_probs=325.7
Q ss_pred hhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCC
Q 008629 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (559)
Q Consensus 121 ~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (559)
..++++.+++.++ |||+||||||++|++|+ ++|.+ ++ ||+.++++|+|||||||||||||+|
T Consensus 27 ~~~~~~~~~~~~~-l~i~YtP~V~~~c~~~~---~~p~~----------v~----~~t~~~~~V~VvTdg~~vLGlGD~G 88 (388)
T 1vl6_A 27 RTALPVEKVDRET-LSLLYTPGVADVARACA---EDPEK----------TY----VYTSRWNTVAVVSDGSAVLGLGNIG 88 (388)
T ss_dssp EEECSCSCCCHHH-HHHHSTTTHHHHHHHHH---HCGGG----------HH----HHSGGGGEEEEEECSTTBTTTBSCC
T ss_pred EEEEeeecCCHHH-CeEEECchHHHHHHHHH---hCHHH----------HH----hhcccCCeEEEEECCccccCCCccc
Confidence 5678888888866 89999999999999987 55544 44 6899999999999999999999999
Q ss_pred Cc-cccchhHHHHHHhHhcCCCCCc--chhHhHHHHHHHHHHhhCCC-eeeeeccCCCCcHHHHHHHHcC--CCCeeecC
Q 008629 201 CQ-GMGIPVGKLALYTALGGIRPSA--EYAELLDEFMSAVKQNYGEK-VLIQFEDFANHNAFELLAKYGT--THLVFNDD 274 (559)
Q Consensus 201 ~~-GmgI~iGKl~LY~a~gGI~P~~--~y~~~vdefv~av~~~fGp~-~lIq~EDf~~~~Af~lL~ryr~--~~~~FnDD 274 (559)
++ |||||+||+.||++|||||..+ .....+||||++|++.| |. ..||||||+++|||++|+|||+ ++||||||
T Consensus 89 ~~ag~pI~egK~~Lf~~~agid~~pi~ldv~~~dE~v~~vk~~~-p~f~~i~lED~~~p~af~il~r~r~~~~Ipvf~DD 167 (388)
T 1vl6_A 89 PYGALPVMEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLE-PSFGGINLEDIGAPKCFRILQRLSEEMNIPVFHDD 167 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEECSCCCHHHHHHHHHHTG-GGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHH
T ss_pred cccCCcchhCHHHHHHhccCCceEeEEeCCCCHHHHHHHHHHcC-CcceEeCHhhcCCHHHHHHHHHhhhhcCcceeccc
Confidence 98 9999999999999999999777 23334999999999999 77 8899999999999999999997 59999999
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC-
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS- 353 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~- 353 (559)
|||||+|++||+++|++++|++++|+||||+|||+||+++|++|+.. | .++||++|++|||+.+|.+.
T Consensus 168 iqGTasV~lAal~~A~~i~g~~l~~~kVVv~GAGaAG~~iAkll~~~-----G------~~~I~v~Dr~Gli~~~R~~~~ 236 (388)
T 1vl6_A 168 QQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDL-----G------VKNVVAVDRKGILNENDPETC 236 (388)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHH-----T------CCEEEEEETTEECCTTSGGGC
T ss_pred cccHHHHHHHHHHHHHHHhCCCCCCcEEEEECCCHHHHHHHHHHHhC-----C------CCeEEEEECCCcccCCCcccc
Confidence 99999999999999999999999999999999999999999999874 6 38999999999999999643
Q ss_pred CchhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 008629 354 LQHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 430 (559)
Q Consensus 354 l~~~k~~fA~~~~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w 430 (559)
|+++|++||++... ..+|.|+|+. +|+|||+|+ +|+||+|+|+.|+ ++||||+||||| |||+||||++|
T Consensus 237 L~~~k~~~A~~~~~~~~~~~L~eav~~--ADVlIG~Sa-p~l~t~emVk~Ma---~~pIIfalSNPt--~E~~p~~a~~~ 308 (388)
T 1vl6_A 237 LNEYHLEIARITNPERLSGDLETALEG--ADFFIGVSR-GNILKPEWIKKMS---RKPVIFALANPV--PEIDPELAREA 308 (388)
T ss_dssp SSHHHHHHHHTSCTTCCCSCHHHHHTT--CSEEEECSC-SSCSCHHHHTTSC---SSCEEEECCSSS--CSSCHHHHHHT
T ss_pred cCHHHHHHHHhhhccCchhhHHHHHcc--CCEEEEeCC-CCccCHHHHHhcC---CCCEEEEcCCCC--CCCCHHHHHHh
Confidence 99999999987442 4689999997 899999999 7999999999998 799999999999 99999999999
Q ss_pred cCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCC
Q 008629 431 SKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFS 510 (559)
Q Consensus 431 t~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~ 510 (559)
|+|||||| |+++|||+||+|+|||||||+++++|+ |||+|+++||++||+++ ++..++|||+++
T Consensus 309 --g~~i~atG----------r~~~p~Q~NN~~~FPgi~~Gal~~~a~-i~~~m~~aAa~alA~~~---~~~~~~i~P~~~ 372 (388)
T 1vl6_A 309 --GAFIVATG----------RSDHPNQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARSC---EPEPERIIPEAF 372 (388)
T ss_dssp --TCSEEEES----------CTTSSSBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTS---CCBTTBSSCCTT
T ss_pred --cCeEEEeC----------CCCCCCcCCceeEcchHhHHHHhcCCc-cCHHHHHHHHHHHHhhh---ccCCCcccCCCC
Confidence 99999999 689999999999999999999999999 99999999999999999 678899999999
Q ss_pred CccchHHHHHHHHHHHH
Q 008629 511 NIRKISANIAANVAAKA 527 (559)
Q Consensus 511 ~ir~vs~~VA~aVa~~A 527 (559)
+ |+||.+||.||+++|
T Consensus 373 ~-~~v~~~vA~aVa~~A 388 (388)
T 1vl6_A 373 D-MKVHLNVYTAVKGSA 388 (388)
T ss_dssp C-HHHHHHHHHHHHHCC
T ss_pred c-chhhHHHHHHHHhhC
Confidence 9 999999999999865
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-85 Score=702.01 Aligned_cols=383 Identities=30% Similarity=0.414 Sum_probs=346.0
Q ss_pred hhhHHHhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCC
Q 008629 121 RLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLG 200 (559)
Q Consensus 121 ~Lfy~ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG 200 (559)
..++++.+++.+ +|||+||||||++|++|++ |++++++ ||.++|+|+|||||+|||||||+|
T Consensus 21 ~~~~~~~~~~~~-~l~~~YtP~v~~~c~~~~~-------------~~~~~~~----~~~~~~~v~vvtdgt~ilGlG~iG 82 (439)
T 2dvm_A 21 EVIPKVSLESRE-ELTLAYTPGVAEPCKEIAR-------------DPGKVYE----YTSKGNLVAVVSDGSRILGLGNIG 82 (439)
T ss_dssp EEEESSCCCSHH-HHHHHSTTTTHHHHHHHHH-------------CGGGHHH----HSSGGGEEEEEECSTTBTTTBCCC
T ss_pred EEEEeeccCCHH-HCeeEECchhHHHHHHHHH-------------CHHHHHh----hcccCcEEEEEECCCeEeccccee
Confidence 345666777665 5899999999999999983 6677775 888999999999999999999999
Q ss_pred Cc-cccchhHHHHHHhHhcCCCCCc-chhH-hHHHHHHHHHHhhCCC-eeeeeccCCCCcHHHHHHHHcC--CCCeeecC
Q 008629 201 CQ-GMGIPVGKLALYTALGGIRPSA-EYAE-LLDEFMSAVKQNYGEK-VLIQFEDFANHNAFELLAKYGT--THLVFNDD 274 (559)
Q Consensus 201 ~~-GmgI~iGKl~LY~a~gGI~P~~-~y~~-~vdefv~av~~~fGp~-~lIq~EDf~~~~Af~lL~ryr~--~~~~FnDD 274 (559)
.+ ++|+++||++||++|||||-.+ ..+- .+|||+++|+..| |+ ..||||||+.||||++|++|++ ++||||||
T Consensus 83 ~hS~sPvmh~ka~lf~~~gGid~~yi~ldv~d~de~~~~v~~l~-~~f~GinvED~T~P~k~~il~~l~~avNt~vf~dD 161 (439)
T 2dvm_A 83 PLAGLPVMEGKALLFKRFGGVDAFPIMIKEQEPNKFIDIVKAIA-PTFGGINLEDIASPKCFYILERLREELDIPVFHDD 161 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCEEEEEECSCCSHHHHHHHHHHTG-GGCSEEEECSCCTTHHHHHHHHHHHHCSSCEEEHH
T ss_pred ccccCHHHHHHHHHHHHhCCCCCeeeeeecCCHHHHHHHHHHhC-ccCcEEEEEeCCCchHHHHHHHHHHhcCEEEEeCC
Confidence 97 7999999999999999999666 3333 6899999999876 55 6799999999999999999986 79999999
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEc----ccCccccCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD----SKGLIVSSR 350 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD----~~GLi~~~R 350 (559)
+||||.+.++|+++|++..|++++++|+||+|||+||.+|+.+|... |+++ ++||++| ++||+++.
T Consensus 162 ~~gtgntd~aG~~~AL~~~g~~l~~~rvlvlGAGgAg~aia~~L~~~-----G~~~----~~I~vvd~~~~R~G~~~~a- 231 (439)
T 2dvm_A 162 QQGTAAVVLAGLLNALKVVGKKISEITLALFGAGAAGFATLRILTEA-----GVKP----ENVRVVELVNGKPRILTSD- 231 (439)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCTTTCCEEEECCSHHHHHHHHHHHHT-----TCCG----GGEEEEEEETTEEEECCTT-
T ss_pred CcEEeehHHHHHHHHHHHhCCCccCCEEEEECccHHHHHHHHHHHHc-----CCCc----CeEEEEEccCCCcCccccc-
Confidence 99999999999999999999999999999999999999999999863 8753 7899999 99999886
Q ss_pred cCC---CchhchhhccccC---CCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCC
Q 008629 351 KDS---LQHFKKPWAHEHE---PVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSNPTSQSECT 423 (559)
Q Consensus 351 ~~~---l~~~k~~fA~~~~---~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~Ect 423 (559)
+. |.+++++|++... ...+|.|+++. +|+|||+|+.+ |+|++++++.|+ ++||||+||||+ +||+
T Consensus 232 -~~~~~L~~~~~~~a~~~~~~~~~~~L~e~l~~--aDVlInaT~~~~G~~~~e~v~~m~---~~~iVfDLynP~--~t~~ 303 (439)
T 2dvm_A 232 -LDLEKLFPYRGWLLKKTNGENIEGGPQEALKD--ADVLISFTRPGPGVIKPQWIEKMN---EDAIVFPLANPV--PEIL 303 (439)
T ss_dssp -SCHHHHSTTCHHHHTTSCTTCCCSSHHHHHTT--CSEEEECSCCCSSSSCHHHHTTSC---TTCEEEECCSSS--CSSC
T ss_pred -cchhHHHHHHHHHhhccccccccccHHHHhcc--CCEEEEcCCCccCCCChHHHHhcC---CCCEEEECCCCC--Ccch
Confidence 24 7888888987532 24689999986 89999999985 899999999886 899999999999 8999
Q ss_pred HHHHhcccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCC
Q 008629 424 AEEAYTWSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKG 503 (559)
Q Consensus 424 pedA~~wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~ 503 (559)
+++|.+| |++++||| +++.|+|+||+|+|||||+|+++++|++|||+|+++||++||++++++ ..+
T Consensus 304 ~~~A~~~--G~~ivatG----------~~ml~~Q~nn~~~FPGi~~g~l~~~a~~i~~~m~~aaa~ala~~~~~~--~~~ 369 (439)
T 2dvm_A 304 PEEAKKA--GARIVATG----------RSDYPNQINNLLGFPGIFRGALDVRARTITDSMIIAAAKAIASIVEEP--SEE 369 (439)
T ss_dssp HHHHHHH--TCSEECBS----------CSSSSSBCCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHHTSSSC--BTT
T ss_pred HHHHHHc--CCeEEcCC----------CchhHHHHHHHhcccCchHHHHhcCCCCCCHHHHHHHHHHHHhhCccc--cCC
Confidence 9999998 88999998 689999999999999999999999999999999999999999999876 789
Q ss_pred cccCCCCCccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCC
Q 008629 504 LIYPPFSNIRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVY 555 (559)
Q Consensus 504 ~l~P~~~~ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y 555 (559)
.|||++++ |+||.+||.||+++|+++|+|+..++|+|+.+|+++.||.+.|
T Consensus 370 ~i~P~~~~-~~v~~~va~av~~~a~~~g~a~~~~~~~~~~~~~~~~~~~~~~ 420 (439)
T 2dvm_A 370 NIIPSPLN-PIVYAREARAVAEEAMKEGVARTKVKGEWVEEHTIRLIEFYEN 420 (439)
T ss_dssp BCSCCTTC-HHHHHHHHHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred ccCCCccc-chhhHHHHHHHHHHHHHhCCCCCCCChHHHHHHHHHHhhhhHH
Confidence 99999999 9999999999999999999998777789999999999998754
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=5.7e-08 Score=103.96 Aligned_cols=127 Identities=13% Similarity=0.205 Sum_probs=102.8
Q ss_pred CCCee----------ecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhccc
Q 008629 267 THLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKK 336 (559)
Q Consensus 267 ~~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~ 336 (559)
.+|+| .|++.||+-++++|+..+ ++..|.+.+++|+|+|..|.++|+.+... |. +
T Consensus 181 ~~Pvi~vnds~tK~~fDn~yGt~~s~~~gi~ra---t~~~L~GktV~ViG~G~IGk~vA~~Lra~-----Ga-------~ 245 (435)
T 3gvp_A 181 CVPAMNVNDSVTKQKFDNLYCCRESILDGLKRT---TDMMFGGKQVVVCGYGEVGKGCCAALKAM-----GS-------I 245 (435)
T ss_dssp CSCEEECTTCHHHHHHHTHHHHHHHHHHHHHHH---HCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------E
T ss_pred CCCEEEecchhhhhhhhhhhhhHHHHHHHHHHh---hCceecCCEEEEEeeCHHHHHHHHHHHHC-----CC-------E
Confidence 69999 899999999999999765 79999999999999999999999988653 64 5
Q ss_pred EEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 337 ICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 337 i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
++.+|.+.. +...|. ..-...+|.|+++. .|++|.+++..++++++.++.|. +..||+-.++
T Consensus 246 Viv~D~dp~------------ra~~A~~~G~~v~~Leeal~~--ADIVi~atgt~~lI~~e~l~~MK---~gailINvgr 308 (435)
T 3gvp_A 246 VYVTEIDPI------------CALQACMDGFRLVKLNEVIRQ--VDIVITCTGNKNVVTREHLDRMK---NSCIVCNMGH 308 (435)
T ss_dssp EEEECSCHH------------HHHHHHHTTCEECCHHHHTTT--CSEEEECSSCSCSBCHHHHHHSC---TTEEEEECSS
T ss_pred EEEEeCChh------------hhHHHHHcCCEeccHHHHHhc--CCEEEECCCCcccCCHHHHHhcC---CCcEEEEecC
Confidence 888886521 111121 11113579999985 99999998888999999999997 7889999999
Q ss_pred CCCCCCCCHHHH
Q 008629 416 PTSQSECTAEEA 427 (559)
Q Consensus 416 Pt~~~EctpedA 427 (559)
+. .|+..+..
T Consensus 309 g~--~EId~~~L 318 (435)
T 3gvp_A 309 SN--TEIDVASL 318 (435)
T ss_dssp TT--TTBTGGGG
T ss_pred CC--ccCCHHHH
Confidence 97 88887665
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.2e-08 Score=107.14 Aligned_cols=130 Identities=17% Similarity=0.194 Sum_probs=105.4
Q ss_pred CCCCee----------ecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 266 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 266 ~~~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
..+|+| .|++.||+.+++.|++. .++..|.+.+++|+|.|..|.++|+.+... |.
T Consensus 171 L~iPVinvndsvtk~~~Dn~~Gt~~slldgi~r---atg~~L~GktVgIiG~G~IG~~vA~~Lka~-----Ga------- 235 (436)
T 3h9u_A 171 LTIPAMNVNDSVTKSKFDNLYGCRESLVDGIKR---ATDVMIAGKTACVCGYGDVGKGCAAALRGF-----GA------- 235 (436)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHHH---HHCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------
T ss_pred CCCceEeechhhhhhhhhccccchHHHHHHHHH---hcCCcccCCEEEEEeeCHHHHHHHHHHHHC-----CC-------
Confidence 579999 89999999999999964 579999999999999999999999998753 64
Q ss_pred cEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 336 KICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 336 ~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
+++++|++.. +...|. ..-...+|.|+++. .|++|.+++..++++++.++.|. +..||+-+|
T Consensus 236 ~Viv~D~~p~------------~a~~A~~~G~~~~sL~eal~~--ADVVilt~gt~~iI~~e~l~~MK---~gAIVINvg 298 (436)
T 3h9u_A 236 RVVVTEVDPI------------NALQAAMEGYQVLLVEDVVEE--AHIFVTTTGNDDIITSEHFPRMR---DDAIVCNIG 298 (436)
T ss_dssp EEEEECSCHH------------HHHHHHHTTCEECCHHHHTTT--CSEEEECSSCSCSBCTTTGGGCC---TTEEEEECS
T ss_pred EEEEECCChh------------hhHHHHHhCCeecCHHHHHhh--CCEEEECCCCcCccCHHHHhhcC---CCcEEEEeC
Confidence 5888887421 111111 11123489999985 99999988888899999999997 789999999
Q ss_pred CCCCCCCCCHHHHhc
Q 008629 415 NPTSQSECTAEEAYT 429 (559)
Q Consensus 415 NPt~~~EctpedA~~ 429 (559)
++. .|+.++...+
T Consensus 299 Rg~--vEID~~~L~~ 311 (436)
T 3h9u_A 299 HFD--TEIQVAWLKA 311 (436)
T ss_dssp SSG--GGBCHHHHHH
T ss_pred CCC--CccCHHHHHh
Confidence 998 8999987765
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2e-06 Score=90.71 Aligned_cols=218 Identities=18% Similarity=0.236 Sum_probs=126.9
Q ss_pred CcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCc--cccchhHHHHHHhHhcCCCCCcchhHhHHHHHHHHHHhhCC
Q 008629 166 EKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ--GMGIPVGKLALYTALGGIRPSAEYAELLDEFMSAVKQNYGE 243 (559)
Q Consensus 166 d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI~P~~~y~~~vdefv~av~~~fGp 243 (559)
++..++++.++ +.+|+|.++++..+|++|.+.. |+.|+.+ ..+|. |-.|= .-.+-..+.+..+++ .
T Consensus 26 tP~~v~~L~~~----G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~-~~~~~-adiil---~vk~p~~~~i~~l~~---~ 93 (401)
T 1x13_A 26 TPKTVEQLLKL----GFTVAVESGAGQLASFDDKAFVQAGAEIVEG-NSVWQ-SEIIL---KVNAPLDDEIALLNP---G 93 (401)
T ss_dssp CHHHHHHHHHT----TCEEEEETTTTGGGTCCHHHHHHHTCEEECG-GGGGS-SSEEE---CSSCCCHHHHTTCCT---T
T ss_pred CHHHHHHHHHC----CCEEEEEECCCcccCCChHHHHHCCCEEecc-HHHhc-CCeEE---EeCCCCHHHHHHhcC---C
Confidence 34455555553 4589999999999999999875 8888888 56665 21110 000012344444432 1
Q ss_pred CeeeeeccCC-CCcHHHHHHHHc-CCCCeee-cCC------c----chhHHHHHHHHHHHHHh----CC----------C
Q 008629 244 KVLIQFEDFA-NHNAFELLAKYG-TTHLVFN-DDI------Q----GTASVVLAGVVAALKLI----GG----------T 296 (559)
Q Consensus 244 ~~lIq~EDf~-~~~Af~lL~ryr-~~~~~Fn-DDi------Q----GTaaV~LAgll~Alr~~----g~----------~ 296 (559)
..+|.+=..+ ++. ++++.+ ..+.+|+ +.+ | .+....+|| .+|++.. ++ .
T Consensus 94 ~~li~~~~~~~d~~---~~~al~~~gI~v~~~e~v~~~~~a~~l~~l~~~a~~ag-~~av~~~~~~~~~~~~~~~~~~g~ 169 (401)
T 1x13_A 94 TTLVSFIWPAQNPE---LMQKLAERNVTVMAMDSVPRISRAQSLDALSSMANIAG-YRAIVEAAHEFGRFFTGQITAAGK 169 (401)
T ss_dssp CEEEECCCGGGCHH---HHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHHHHHHHH-HHHHHHHHHHCSSCSSCEEETTEE
T ss_pred CcEEEEecCCCCHH---HHHHHHHCCCEEEEeehhhhhhhhcccchHHHHHHHHH-HHHHHHHHHhcccccCCceeeccC
Confidence 1223222221 233 344443 5788873 222 2 455556665 3444432 22 2
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch------------hchhhccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH------------FKKPWAHE 364 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~------------~k~~fA~~ 364 (559)
+...+|+|+|+|.+|.++++++.. .|. +++++|++.-..... +.+.. .+..|++.
T Consensus 170 l~g~~V~ViGaG~iG~~aa~~a~~-----~Ga-------~V~v~D~~~~~~~~~-~~lGa~~~~~~~~~~~~~~~g~~~~ 236 (401)
T 1x13_A 170 VPPAKVMVIGAGVAGLAAIGAANS-----LGA-------IVRAFDTRPEVKEQV-QSMGAEFLELDFKEEAGSGDGYAKV 236 (401)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCGGGHHHH-HHTTCEECCC--------CCHHHHH
T ss_pred cCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEcCCHHHHHHH-HHcCCEEEEecccccccccccchhh
Confidence 568999999999999999988764 263 588898864321100 00100 00011111
Q ss_pred cCC------CCCHHHHhcccCCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 365 HEP------VNNLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 365 ~~~------~~~L~e~V~~vkPtvLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
..+ ..+|.+.++. .|++|++...+ .+++++.++.|. +..+|+-+|+|.
T Consensus 237 ~~~~~~~~~~~~l~e~~~~--aDvVI~~~~~pg~~ap~li~~~~l~~mk---~g~vIVdva~~~ 295 (401)
T 1x13_A 237 MSDAFIKAEMELFAAQAKE--VDIIVTTALIPGKPAPKLITREMVDSMK---AGSVIVDLAAQN 295 (401)
T ss_dssp HSHHHHHHHHHHHHHHHHH--CSEEEECCCCTTSCCCCCBCHHHHHTSC---TTCEEEETTGGG
T ss_pred ccHHHHHHHHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhcCC---CCcEEEEEcCCC
Confidence 000 0147777775 89999996443 678999999997 788999999873
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.9e-05 Score=81.28 Aligned_cols=128 Identities=16% Similarity=0.185 Sum_probs=98.2
Q ss_pred CCCCee----------ecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 266 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 266 ~~~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
..+|+| .|+..||+-.++.|+. |.+|..|...+++|+|.|..|.++|+.+... |+
T Consensus 207 L~~PvinVnds~tK~~fDn~yG~~eslvdgI~---Ratg~~L~GKTVgVIG~G~IGr~vA~~lraf-----Ga------- 271 (464)
T 3n58_A 207 LPFPAINVNDSVTKSKFDNKYGCKESLVDGIR---RGTDVMMAGKVAVVCGYGDVGKGSAQSLAGA-----GA------- 271 (464)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------
T ss_pred CCCCEEeeccHhhhhhhhhhhcchHHHHHHHH---HhcCCcccCCEEEEECcCHHHHHHHHHHHHC-----CC-------
Confidence 479999 6778999999888885 5679999999999999999999999988653 64
Q ss_pred cEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 336 KICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 336 ~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
+++++|.+.. ....|. ..-...+|.|+++. .|+++-+++..++++++.++.|. +..||.-.+
T Consensus 272 ~Viv~d~dp~------------~a~~A~~~G~~vv~LeElL~~--ADIVv~atgt~~lI~~e~l~~MK---~GAILINvG 334 (464)
T 3n58_A 272 RVKVTEVDPI------------CALQAAMDGFEVVTLDDAAST--ADIVVTTTGNKDVITIDHMRKMK---DMCIVGNIG 334 (464)
T ss_dssp EEEEECSSHH------------HHHHHHHTTCEECCHHHHGGG--CSEEEECCSSSSSBCHHHHHHSC---TTEEEEECS
T ss_pred EEEEEeCCcc------------hhhHHHhcCceeccHHHHHhh--CCEEEECCCCccccCHHHHhcCC---CCeEEEEcC
Confidence 5887775321 101111 11122479999985 99999998888899999999997 788998888
Q ss_pred CCCCCCCCCHHHH
Q 008629 415 NPTSQSECTAEEA 427 (559)
Q Consensus 415 NPt~~~EctpedA 427 (559)
+.. .|+..+..
T Consensus 335 Rgd--vEID~~aL 345 (464)
T 3n58_A 335 HFD--NEIQVAAL 345 (464)
T ss_dssp SST--TTBTCGGG
T ss_pred CCC--cccCHHHH
Confidence 876 66665544
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.5e-05 Score=83.66 Aligned_cols=132 Identities=15% Similarity=0.195 Sum_probs=100.7
Q ss_pred CCCCee----------ecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 266 TTHLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 266 ~~~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
..+|+| .|+++||+..++.|+. |.++..|.+.+++|.|+|..|.++|+.+.. .|.
T Consensus 225 L~iPvinvnDs~tK~~fDn~yGt~~sl~dgi~---r~tg~~L~GKtVvVtGaGgIG~aiA~~Laa-----~GA------- 289 (488)
T 3ond_A 225 LLFPAINVNDSVTKSKFDNLYGCRHSLPDGLM---RATDVMIAGKVAVVAGYGDVGKGCAAALKQ-----AGA------- 289 (488)
T ss_dssp CCSCEEECTTSHHHHTTHHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------
T ss_pred CCCceecccchhhhhHhhhhccccHHHHHHHH---HHcCCcccCCEEEEECCCHHHHHHHHHHHH-----CCC-------
Confidence 479999 6899999999999886 789999999999999999888888888765 363
Q ss_pred cEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 336 KICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 336 ~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
+++++|++.. + .... +...-...++.++++. .|+++-.++..++++.+.++.|. +..||+-.++
T Consensus 290 ~Viv~D~~~~----~---a~~A----a~~g~dv~~lee~~~~--aDvVi~atG~~~vl~~e~l~~mk---~gaiVvNaG~ 353 (488)
T 3ond_A 290 RVIVTEIDPI----C---ALQA----TMEGLQVLTLEDVVSE--ADIFVTTTGNKDIIMLDHMKKMK---NNAIVCNIGH 353 (488)
T ss_dssp EEEEECSCHH----H---HHHH----HHTTCEECCGGGTTTT--CSEEEECSSCSCSBCHHHHTTSC---TTEEEEESSS
T ss_pred EEEEEcCCHH----H---HHHH----HHhCCccCCHHHHHHh--cCEEEeCCCChhhhhHHHHHhcC---CCeEEEEcCC
Confidence 6888887421 1 1111 1111122467777764 89999998888899999999886 7889999999
Q ss_pred CCCCCCCCHHHHhcc
Q 008629 416 PTSQSECTAEEAYTW 430 (559)
Q Consensus 416 Pt~~~EctpedA~~w 430 (559)
+. .|...++.-.|
T Consensus 354 ~~--~Ei~~~~l~~~ 366 (488)
T 3ond_A 354 FD--NEIDMLGLETH 366 (488)
T ss_dssp TT--TTBTHHHHHTS
T ss_pred CC--cccchHHHHHh
Confidence 85 78888776555
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00064 Score=72.25 Aligned_cols=110 Identities=17% Similarity=0.218 Sum_probs=71.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc--------------hhchhh
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ--------------HFKKPW 361 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~--------------~~k~~f 361 (559)
.+...||+|+|+|.+|..+|+++... |. +++++|++.-......+ +- +-+..|
T Consensus 187 ~v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga-------~V~v~D~~~~~l~~~~~-~G~~~~~~~~~~~~d~~~~~~y 253 (405)
T 4dio_A 187 TVPAAKIFVMGAGVAGLQAIATARRL-----GA-------VVSATDVRPAAKEQVAS-LGAKFIAVEDEEFKAAETAGGY 253 (405)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSTTHHHHHHH-TTCEECCCCC------------
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHC-----CC-------EEEEEcCCHHHHHHHHH-cCCceeecccccccccccccch
Confidence 46789999999999999999988653 63 58899987532111000 00 001124
Q ss_pred ccccCC------CCCHHHHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCC
Q 008629 362 AHEHEP------VNNLLDAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSN-PTSQSECT 423 (559)
Q Consensus 362 A~~~~~------~~~L~e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~Ect 423 (559)
+++..+ ..+|.|+++. .|++|++... +.+||+++++.|. +.+||+-+|- |-...|+|
T Consensus 254 a~e~s~~~~~~~~~~l~e~l~~--aDVVI~tvlipg~~ap~Lvt~emv~~Mk---~GsVIVDvA~d~GG~~e~t 322 (405)
T 4dio_A 254 AKEMSGEYQVKQAALVAEHIAK--QDIVITTALIPGRPAPRLVTREMLDSMK---PGSVVVDLAVERGGNIEGA 322 (405)
T ss_dssp -----CHHHHHHHHHHHHHHHT--CSEEEECCCCSSSCCCCCBCHHHHTTSC---TTCEEEETTGGGTCSBTTC
T ss_pred hhhcchhhhhhhHhHHHHHhcC--CCEEEECCcCCCCCCCEEecHHHHhcCC---CCCEEEEEeCCCCCCcccc
Confidence 432111 1368999985 9999998533 4579999999997 8899999995 33345554
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0017 Score=68.44 Aligned_cols=100 Identities=22% Similarity=0.228 Sum_probs=67.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh-------------chhhcc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-------------KKPWAH 363 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~-------------k~~fA~ 363 (559)
+...|++|+|+|.+|..+|+.+... |. +++++|++.-.. +.+... ...|++
T Consensus 182 v~~~kV~ViG~G~iG~~aa~~a~~l-----Ga-------~V~v~D~~~~~l----~~~~~lGa~~~~l~~~~~~~~gya~ 245 (381)
T 3p2y_A 182 VKPASALVLGVGVAGLQALATAKRL-----GA-------KTTGYDVRPEVA----EQVRSVGAQWLDLGIDAAGEGGYAR 245 (381)
T ss_dssp ECCCEEEEESCSHHHHHHHHHHHHH-----TC-------EEEEECSSGGGH----HHHHHTTCEECCCC-----------
T ss_pred cCCCEEEEECchHHHHHHHHHHHHC-----CC-------EEEEEeCCHHHH----HHHHHcCCeEEeccccccccccchh
Confidence 5789999999999999999988754 63 588999874211 001110 011221
Q ss_pred cc------CCCCCHHHHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 364 EH------EPVNNLLDAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 364 ~~------~~~~~L~e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.. ....+|.++++. .|++|++... +.+||+++++.|. +..+|+-+|=+.
T Consensus 246 ~~~~~~~~~~~~~l~e~l~~--aDIVI~tv~iPg~~ap~Lvt~emv~~Mk---pGsVIVDvA~d~ 305 (381)
T 3p2y_A 246 ELSEAERAQQQQALEDAITK--FDIVITTALVPGRPAPRLVTAAAATGMQ---PGSVVVDLAGET 305 (381)
T ss_dssp --CHHHHHHHHHHHHHHHTT--CSEEEECCCCTTSCCCCCBCHHHHHTSC---TTCEEEETTGGG
T ss_pred hhhHHHHhhhHHHHHHHHhc--CCEEEECCCCCCcccceeecHHHHhcCC---CCcEEEEEeCCC
Confidence 10 012368889885 9999997533 3579999999997 788999998654
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=96.67 E-value=0.012 Score=63.01 Aligned_cols=174 Identities=20% Similarity=0.194 Sum_probs=121.4
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH-H-HHHHHcC---C--CCee----------ecCCcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF-E-LLAKYGT---T--HLVF----------NDDIQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af-~-lL~ryr~---~--~~~F----------nDDiQGTaaV~LAgll 287 (559)
|-..+...|+.++.+.-||+.-|-=+|++..-.. . +.+.|+. . -.++ .|--.-||-=+..++-
T Consensus 130 El~r~~r~f~~~l~~~iG~~~dipApDvgt~~~~m~~~~~~y~~~~g~~~~~~vTGkp~~~GGs~~r~~aTg~Gv~~~~~ 209 (424)
T 3k92_A 130 ELERLSRGYVRAISQIVGPTKDIPAPDVYTNSQIMAWMMDEYSRLREFDSPGFITGKPLVLGGSQGRETATAQGVTICIE 209 (424)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHTSCCGGGCSSCCGGGTCCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCccCCcCCCCHHHHHHHHHHHHHHhCCCCcceeecccccCCCcCCCcccHHHHHHHHHH
Confidence 4445788999999998899888888999874222 1 5567742 1 0122 2333457777888888
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc-hhhccccC
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHE 366 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k-~~fA~~~~ 366 (559)
.+++..|.+|++.||+|-|.|..|...|++|.+. |. +-+.+.|++|-|++.. .|+... +.+.....
T Consensus 210 ~~~~~~g~~l~g~~vaVqG~GnVG~~aa~~l~e~-----Ga------kVVavsD~~G~iyd~~--GlD~~~l~~~~~~~g 276 (424)
T 3k92_A 210 EAVKKKGIKLQNARIIIQGFGNAGSFLAKFMHDA-----GA------KVIGISDANGGLYNPD--GLDIPYLLDKRDSFG 276 (424)
T ss_dssp HHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHH-----TC------EEEEEECSSCEEECTT--CCCHHHHHHHCCSSS
T ss_pred HHHHHcCCCcccCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCcEECCC--CCCHHHHHHHHHHhC
Confidence 8999999999999999999999999999999764 53 4567999999999764 343221 11111111
Q ss_pred -------CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 367 -------PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 367 -------~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
..-+-.+. -.++.||||=+..+ +..|++-++.+ .-.+|.--+| |+
T Consensus 277 ~i~~~~a~~~~~~~i-~~~~~DIliPcA~~-n~I~~~~a~~l----~ak~V~EgAN~p~ 329 (424)
T 3k92_A 277 MVTNLFTDVITNEEL-LEKDCDILVPAAIS-NQITAKNAHNI----QASIVVERANGPT 329 (424)
T ss_dssp CCGGGCSCCBCHHHH-HHSCCSEEEECSCS-SCBCTTTGGGC----CCSEEECCSSSCB
T ss_pred CCCCCCcEEecCccc-eeccccEEeecCcc-cccChhhHhhc----CceEEEcCCCCCC
Confidence 11123343 35689999988775 69999988776 5678888888 65
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0094 Score=59.49 Aligned_cols=133 Identities=15% Similarity=0.165 Sum_probs=87.3
Q ss_pred CCCCeeecC------CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEE
Q 008629 266 TTHLVFNDD------IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 339 (559)
Q Consensus 266 ~~~~~FnDD------iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~l 339 (559)
..+.++|-. .-.+-+|+=.++..++...|..|.+.+++|+|+|..|..+|+.+.. .|. +++.
T Consensus 116 ~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~-----~G~-------~V~~ 183 (293)
T 3d4o_A 116 TNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAA-----LGA-------KVKV 183 (293)
T ss_dssp HTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHCSSCSTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEE
T ss_pred cCCeEEEecCCceeeeeccHhHHHHHHHHHHHhcCCCCCCCEEEEEeeCHHHHHHHHHHHh-----CCC-------EEEE
Confidence 467777743 2245556655666666777889999999999999999999998864 263 5888
Q ss_pred EcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 340 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 340 vD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
+|+.. .+ +...+..-++. -...+|.+.++. .|++|-... .+.++++.++.|. +..+|+=+|. |.
T Consensus 184 ~dr~~----~~---~~~~~~~g~~~-~~~~~l~~~l~~--aDvVi~~~p-~~~i~~~~l~~mk---~~~~lin~ar~~~- 248 (293)
T 3d4o_A 184 GARES----DL---LARIAEMGMEP-FHISKAAQELRD--VDVCINTIP-ALVVTANVLAEMP---SHTFVIDLASKPG- 248 (293)
T ss_dssp EESSH----HH---HHHHHHTTSEE-EEGGGHHHHTTT--CSEEEECCS-SCCBCHHHHHHSC---TTCEEEECSSTTC-
T ss_pred EECCH----HH---HHHHHHCCCee-cChhhHHHHhcC--CCEEEECCC-hHHhCHHHHHhcC---CCCEEEEecCCCC-
Confidence 88752 11 11111000010 011368888874 999997664 5799999999885 5678888884 43
Q ss_pred CCCCCHHHH
Q 008629 419 QSECTAEEA 427 (559)
Q Consensus 419 ~~EctpedA 427 (559)
++..+.+
T Consensus 249 --~~~~~~a 255 (293)
T 3d4o_A 249 --GTDFRYA 255 (293)
T ss_dssp --SBCHHHH
T ss_pred --CCCHHHH
Confidence 3445444
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.019 Score=59.66 Aligned_cols=218 Identities=17% Similarity=0.181 Sum_probs=119.9
Q ss_pred cchHHHHHhcCCCCCeeEEEEecCceecccCCCCCc--cccchhHHHHHHhHhcCC----CCCcchhHhHHHHHHHHHHh
Q 008629 167 KGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ--GMGIPVGKLALYTALGGI----RPSAEYAELLDEFMSAVKQN 240 (559)
Q Consensus 167 ~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~--GmgI~iGKl~LY~a~gGI----~P~~~y~~~vdefv~av~~~ 240 (559)
+..++++.++ +.+|+|.++++...|+.|.... |..|..++-.++..|--| .|... .+-++.++.+++
T Consensus 20 P~~v~~L~~~----G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~~p~~~--~~~~~~i~~l~~- 92 (384)
T 1l7d_A 20 PEVVKKLVGL----GFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTA--EEGTDEVALIKE- 92 (384)
T ss_dssp HHHHHHHHHT----TCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCG--GGSCCGGGGSCT-
T ss_pred HHHHHHHHhC----CCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEecCcccc--cCCHHHHHhhcc-
Confidence 3445555442 5689999999999999998764 788887776666322111 12100 001222333221
Q ss_pred hCCCeeeeeccCCCCcHHHHHHHHc-CCCCeee----cCC-cc------hhHHHHH---HHHHHHHHhCC----------
Q 008629 241 YGEKVLIQFEDFANHNAFELLAKYG-TTHLVFN----DDI-QG------TASVVLA---GVVAALKLIGG---------- 295 (559)
Q Consensus 241 fGp~~lIq~EDf~~~~Af~lL~ryr-~~~~~Fn----DDi-QG------TaaV~LA---gll~Alr~~g~---------- 295 (559)
...+|-+=.... .-.+++.+. ..+.++| ++. .+ .....+| +++.+.+..++
T Consensus 93 --~~~~i~~~~~~~--~~~~~~~~~~~gi~~~~~e~~~~~~~~~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~~ 168 (384)
T 1l7d_A 93 --GAVLMCHLGALT--NRPVVEALTKRKITAYAMELMPRISRAQSMDILSSQSNLAGYRAVIDGAYEFARAFPMMMTAAG 168 (384)
T ss_dssp --TCEEEEECCGGG--CHHHHHHHHHTTCEEEEGGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTE
T ss_pred --CCEEEEEecccC--CHHHHHHHHHCCCEEEEeccccccccccccchhhHHHHHHHHHHHHHHHHHhhhcccchhccCC
Confidence 122232222211 123445553 4566664 111 11 1111223 45566665553
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch----------------
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK---------------- 359 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~---------------- 359 (559)
.+...+++|+|+|.+|.+++..+.. .|. +++++|++.- |.+.+..+-.
T Consensus 169 ~l~g~~V~ViGaG~iG~~aa~~a~~-----~Ga-------~V~~~d~~~~----~~~~~~~~Ga~~~~i~~~~~~~~~~~ 232 (384)
T 1l7d_A 169 TVPPARVLVFGVGVAGLQAIATAKR-----LGA-------VVMATDVRAA----TKEQVESLGGKFITVDDEAMKTAETA 232 (384)
T ss_dssp EECCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCST----THHHHHHTTCEECCC-----------
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCHH----HHHHHHHcCCeEEeeccccccccccc
Confidence 6788999999999999999988764 363 3888987532 1100100000
Q ss_pred -hhccccCC------CCCHHHHhcccCCcEEEeccCC-----CCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 360 -PWAHEHEP------VNNLLDAVKVIKPTILIGSSGV-----GRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 360 -~fA~~~~~------~~~L~e~V~~vkPtvLIG~S~~-----~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
.|++...+ ...|.+.++. .|++|.++.. +.+++++.++.|. +..+|+-+|.+
T Consensus 233 ~~~~~~~s~~~~~~~~~~l~~~~~~--aDvVi~~~~~pg~~~~~li~~~~l~~mk---~g~vivdva~~ 296 (384)
T 1l7d_A 233 GGYAKEMGEEFRKKQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMK---PGSVIIDLAVE 296 (384)
T ss_dssp ------------CCHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTTSC---TTCEEEETTGG
T ss_pred ccchhhcCHHHHhhhHHHHHHHhCC--CCEEEECCccCCCCCCeeeCHHHHhcCC---CCCEEEEEecC
Confidence 11111000 0127777774 9999998832 3468999999996 67889988864
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=96.07 E-value=0.12 Score=55.73 Aligned_cols=195 Identities=16% Similarity=0.112 Sum_probs=128.2
Q ss_pred hHHHHHHhHh-c---------CC--CCCc----chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHH---cC
Q 008629 208 VGKLALYTAL-G---------GI--RPSA----EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKY---GT 266 (559)
Q Consensus 208 iGKl~LY~a~-g---------GI--~P~~----~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ry---r~ 266 (559)
.+..+-||.+ + || ||.. +-..|...||..+.+..||+.=|--.|++..-.- -+.+.| +.
T Consensus 112 La~~mT~KnAl~gLP~GGgKggi~~DPk~~s~~El~R~~~~f~~eL~~~iG~d~dvpa~Dig~~~~em~~~~~~y~~~~~ 191 (450)
T 4fcc_A 112 LGFEQTFKNALTTLPMGGGKGGSDFDPKGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSN 191 (450)
T ss_dssp HHHHHHHHHHHTTSSCCEEEEEESCCCTTCCHHHHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCCCCCceEEecCCCcCCHHHHHHHHHHHHHHhhheecCCCCCCccceeecchhhhhhhhhhhhccC
Confidence 4666777753 2 33 4543 5666788889998889999999999999754321 133444 33
Q ss_pred C-CCee----------ecCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcc
Q 008629 267 T-HLVF----------NDDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRK 335 (559)
Q Consensus 267 ~-~~~F----------nDDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~ 335 (559)
. -.|| .+.-.-||-=+.-++-.+++..|.+|++.||+|-|.|..|...|+.|.+. |. +
T Consensus 192 ~~~~v~TGk~~~~GGs~~r~~aTg~Gv~~~~~~~~~~~~~~l~Gk~vaVQG~GnVG~~aa~~L~e~-----Ga------k 260 (450)
T 4fcc_A 192 NTACVFTGKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEF-----GA------R 260 (450)
T ss_dssp CCSCCCSSCCGGGTCCTTTTTHHHHHHHHHHHHHHHHTTCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC------E
T ss_pred CCceeecCCCcccCCCCCCCCceeeeHHHHHHHHHHHcCCCcCCCEEEEeCCChHHHHHHHHHHhc-----CC------e
Confidence 2 2233 12223377667777888899999999999999999999999999998763 63 5
Q ss_pred cEEEEcccCccccCCcCCCchhchhhccc--cCCCCCHHH-------------HhcccCCcEEEeccCCCCCCCHHHHHH
Q 008629 336 KICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLD-------------AVKVIKPTILIGSSGVGRTFTKEVIEA 400 (559)
Q Consensus 336 ~i~lvD~~GLi~~~R~~~l~~~k~~fA~~--~~~~~~L~e-------------~V~~vkPtvLIG~S~~~g~Ft~evv~~ 400 (559)
=+-+-|++|-|++.. .++..+.....+ ......+.+ -+-.++.|||+=+..+ +.+|++-++.
T Consensus 261 vVavsD~~G~i~d~~--Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~~~~i~~~~~DI~iPcAl~-~~I~~~~a~~ 337 (450)
T 4fcc_A 261 VITASDSSGTVVDES--GFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLEGQQPWSVPVDIALPCATQ-NELDVDAAHQ 337 (450)
T ss_dssp EEEEEETTEEEECTT--CCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEETCCGGGSCCSEEEECSCT-TCBCHHHHHH
T ss_pred EEEEecCCceEEeCC--CCCHHHHHHHHHHhcccCCccccccccCCcEEecCcccccCCccEEeecccc-ccccHHHHHH
Confidence 567788999888653 344332211110 000011111 1234689999988774 6999999999
Q ss_pred HHcCCCCcEEEecCC-CC
Q 008629 401 MASFNEKPLILALSN-PT 417 (559)
Q Consensus 401 Ma~~~erPIIFaLSN-Pt 417 (559)
+.+. --.+|.-=+| |+
T Consensus 338 L~a~-g~k~IaEgAN~p~ 354 (450)
T 4fcc_A 338 LIAN-GVKAVAEGANMPT 354 (450)
T ss_dssp HHHT-TCCEEECCSSSCB
T ss_pred HHhc-CceEEecCCCCCC
Confidence 8632 2357777777 55
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.033 Score=59.44 Aligned_cols=174 Identities=13% Similarity=0.129 Sum_probs=118.1
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcH--HHHHHHHcC---C--CCee----------ecCCcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---T--HLVF----------NDDIQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~A--f~lL~ryr~---~--~~~F----------nDDiQGTaaV~LAgll 287 (559)
|-..+...|+.++.+.-||+.-|-=+|++..-. --+.+.|+. . -.++ .+.-.-||-=+.-++-
T Consensus 127 El~r~~r~f~~~l~~~iGp~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~~ 206 (419)
T 3aoe_E 127 ELERLVRRYTAELVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAGLGALLVLE 206 (419)
T ss_dssp HHHHHHHHHHHHHTTTCBTTTEEEEEBTTBCHHHHHHHHHHHHHHHTSCCGGGBSSCCGGGTCCSSCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCeeeccchhcCCCCCCccchHHHHHHHHH
Confidence 445678889999999888999999999987532 125666632 1 0122 2222346656666777
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEE-EEcccCccccCCcCCCchhch-hhcccc
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKIC-LVDSKGLIVSSRKDSLQHFKK-PWAHEH 365 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~-lvD~~GLi~~~R~~~l~~~k~-~fA~~~ 365 (559)
.+++..|.+|++.||+|-|.|..|...|++|.+ .|. +++ +.|++|-|++.. .|+..+. .+....
T Consensus 207 ~~~~~~g~~l~gk~vaVqG~GnVG~~~a~~L~~-----~Ga-------kVVavsD~~G~i~dp~--Gld~~~l~~~~~~~ 272 (419)
T 3aoe_E 207 ALAKRRGLDLRGARVVVQGLGQVGAAVALHAER-----LGM-------RVVAVATSMGGMYAPE--GLDVAEVLSAYEAT 272 (419)
T ss_dssp HHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEEETTEEEECTT--CCCHHHHHHHHHHH
T ss_pred HHHHhcCCCccCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEEcCCCeEECCC--CCCHHHHHHHHHhh
Confidence 888889999999999999999999999998875 363 455 999999998764 3432211 111111
Q ss_pred CCCC----CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 366 EPVN----NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 366 ~~~~----~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
.... +-.+ +-.++.|||+=++. ++.+|++-.+.+ .-.||.--+| |++
T Consensus 273 g~v~~~~~~~~e-~~~~~~DVliP~A~-~n~i~~~~A~~l----~ak~V~EgAN~p~t 324 (419)
T 3aoe_E 273 GSLPRLDLAPEE-VFGLEAEVLVLAAR-EGALDGDRARQV----QAQAVVEVANFGLN 324 (419)
T ss_dssp SSCSCCCBCTTT-GGGSSCSEEEECSC-TTCBCHHHHTTC----CCSEEEECSTTCBC
T ss_pred CCcceeeccchh-hhccCceEEEeccc-ccccccchHhhC----CceEEEECCCCcCC
Confidence 1010 0112 34578999998876 669999988877 4579998998 653
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.017 Score=59.32 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=78.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcC-hHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAG-EAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAG-sAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++-.++..+.+++..++||+|+| ..|.-+|.++... | ..+.+++++
T Consensus 143 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~-----g-------AtVtv~hs~------------ 198 (301)
T 1a4i_A 143 CFIPCTPKGCLELIKETGVPIAGRHAVVVGRSKIVGAPMHDLLLWN-----N-------ATVTTCHSK------------ 198 (301)
T ss_dssp CCCCHHHHHHHHHHHTTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----T-------CEEEEECTT------------
T ss_pred CccCchHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHhC-----C-------CeEEEEECC------------
Confidence 45567889999999999999999999999999 5799999888652 4 357888643
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
..+|.+.++. +|++|+..+.++.+++++|+ +.-+|+=++-|
T Consensus 199 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~ 239 (301)
T 1a4i_A 199 ------------TAHLDEEVNK--GDILVVATGQPEMVKGEWIK------PGAIVIDCGIN 239 (301)
T ss_dssp ------------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC------TTCEEEECCCB
T ss_pred ------------cccHHHHhcc--CCEEEECCCCcccCCHHHcC------CCcEEEEccCC
Confidence 1468889986 99999999999999999985 45577766654
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.025 Score=57.56 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=74.0
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++-.++..+.+|+..++|++|+|. .|..+|.+|... |. .+.+++++
T Consensus 139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-----gA-------tVtv~hs~------------ 194 (285)
T 3l07_A 139 CLESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNA-----KA-------TVTTCHRF------------ 194 (285)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT------------
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC------------
Confidence 344678889999999999999999999999986 899999988752 53 46777542
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
..+|.+.++. +|++|...+.++.++.++|+ +.-+|+=++
T Consensus 195 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvg 233 (285)
T 3l07_A 195 ------------TTDLKSHTTK--ADILIVAVGKPNFITADMVK------EGAVVIDVG 233 (285)
T ss_dssp ------------CSSHHHHHTT--CSEEEECCCCTTCBCGGGSC------TTCEEEECC
T ss_pred ------------chhHHHhccc--CCEEEECCCCCCCCCHHHcC------CCcEEEEec
Confidence 1368889986 99999999999999998884 444555443
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.29 Score=52.80 Aligned_cols=186 Identities=16% Similarity=0.163 Sum_probs=122.2
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHc---CCCC-ee----------ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYG---TTHL-VF----------NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr---~~~~-~F----------nDDiQGTaaV~LAgll~ 288 (559)
+...|-..||..+.+.+||+.=|-=+|++..-.. -+.+.|+ ...+ |+ ..--.-||-=+.-++-.
T Consensus 149 el~r~~r~f~~eL~~~iGp~~DvpApDvGt~~~em~w~~~~y~~~~~~~~g~vTGKp~~~GGs~~r~~aTg~Gv~~~~~~ 228 (456)
T 3r3j_A 149 EILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGVLTGKNIKWGGSNIRAEATGYGVVYFAEN 228 (456)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCCSCBSCCGGGTCCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcCCCCCCCCHHHHHHHHHHHHhhcCcccceecCCcccccCCCCCCcccchHHHHHHHH
Confidence 4555666788888888899988999999864322 1456664 2221 11 11122456566667777
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh--------
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-------- 360 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~-------- 360 (559)
+++..|.+|++.||+|-|.|..|...|+.|.+. |. +-+.+.|++|-|++.. .|+..+..
T Consensus 229 ~~~~~g~~l~g~~VaVQG~GnVG~~aa~~L~e~-----Ga------kvVavsD~~G~iyd~~--Gld~~~l~~~~~~k~~ 295 (456)
T 3r3j_A 229 VLKDLNDNLENKKCLVSGSGNVAQYLVEKLIEK-----GA------IVLTMSDSNGYILEPN--GFTKEQLNYIMDIKNN 295 (456)
T ss_dssp HHHTTTCCSTTCCEEEECCSHHHHHHHHHHHHH-----TC------CBCCEECSSCEEECTT--CCCHHHHHHHHHHHHT
T ss_pred HHHHcCCCccCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEECCCCcEECCC--CCCHHHHHHHHHHHHh
Confidence 888889999999999999999999999998764 53 3455899999888754 34322211
Q ss_pred -------hccccCCCC--CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCCCCCCCHHHHhc
Q 008629 361 -------WAHEHEPVN--NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTSQSECTAEEAYT 429 (559)
Q Consensus 361 -------fA~~~~~~~--~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~~~EctpedA~~ 429 (559)
|+...+... +-.+ +-.++.||||=+.. ++.+|++-++.+-+. .-+||.--+| |++ +| +++.+.
T Consensus 296 ~~~~v~~~~~~~~~a~~v~~~~-i~~~~~DI~iPcA~-~~~I~~~na~~l~~~-~ak~V~EgAN~p~T-~e--A~~iL~ 368 (456)
T 3r3j_A 296 QRLRLKEYLKYSKTAKYFENQK-PWNIPCDIAFPCAT-QNEINENDADLFIQN-KCKMIVEGANMPTH-IK--ALHKLK 368 (456)
T ss_dssp SCCCGGGGGGTCSSCEEECSCC-GGGSCCSEEEECSC-TTCBCHHHHHHHHHH-TCCEEECCSSSCBC-TT--HHHHHH
T ss_pred cCcchhhhhhcCCCceEeCCcc-ccccCccEEEeCCC-ccchhhHHHHHHHhc-CCeEEEecCCCCCC-HH--HHHHHH
Confidence 111001000 1112 23467999998877 679999999998432 4689998998 664 44 556654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.021 Score=57.38 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
-.|++.+++..+..+++.+++|+|||.+|.+++..|.. .|. ++|+++|+. .+| .....+.+.
T Consensus 111 ~~G~~~~l~~~~~~l~~k~vlVlGaGG~g~aia~~L~~-----~G~------~~v~i~~R~----~~~---a~~la~~~~ 172 (283)
T 3jyo_A 111 VSGFGRGMEEGLPNAKLDSVVQVGAGGVGNAVAYALVT-----HGV------QKLQVADLD----TSR---AQALADVIN 172 (283)
T ss_dssp HHHHHHHHHHHCTTCCCSEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSS----HHH---HHHHHHHHH
T ss_pred HHHHHHHHHHhCcCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEECC----HHH---HHHHHHHHH
Confidence 45788899888889999999999999777777766654 365 679988774 222 121212221
Q ss_pred cc-------cCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 363 HE-------HEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 363 ~~-------~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
.. .-+..+|.++++. +|++|-++..|
T Consensus 173 ~~~~~~~i~~~~~~~l~~~l~~--~DiVInaTp~G 205 (283)
T 3jyo_A 173 NAVGREAVVGVDARGIEDVIAA--ADGVVNATPMG 205 (283)
T ss_dssp HHHTSCCEEEECSTTHHHHHHH--SSEEEECSSTT
T ss_pred hhcCCceEEEcCHHHHHHHHhc--CCEEEECCCCC
Confidence 11 1123478888876 89999887754
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.086 Score=56.27 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=105.6
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcH--HHHHHHHcC---CC---Ceee----------cCCcchhHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---TH---LVFN----------DDIQGTASVVLAGV 286 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~A--f~lL~ryr~---~~---~~Fn----------DDiQGTaaV~LAgl 286 (559)
|-..+...|+.++.+.-||+.-|-=+|++..-. --+.+.|+. .. .++- +.-.-||-=+.-++
T Consensus 120 el~r~~r~f~~~l~~~iG~~~dvpA~Dvgt~~~~m~~~~~~y~~~~~~~~~~~~vtGk~~~~GGs~~r~~aTg~Gv~~~~ 199 (421)
T 2yfq_A 120 ELEQLSRGWVRGLYKYLGDRIDIPAPDVNTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVV 199 (421)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEEEEECTTCCHHHHHHHHHHHHHHTTTCCCGGGSCSCCGGGTCCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEECCCCCCCHHHHHHHHHHHHHhhCCCCCCCEEecCchhcCCCCCCCcchHHHHHHHH
Confidence 445678899999999889999999999997522 125666642 11 2221 12233555555567
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-----CccccCCcCCCchhch-h
Q 008629 287 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-----GLIVSSRKDSLQHFKK-P 360 (559)
Q Consensus 287 l~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-----GLi~~~R~~~l~~~k~-~ 360 (559)
-.+++..|.+|++.||+|.|.|..|...|++|.+ .|. +=+-+.|++ |-|++.. .|+.... .
T Consensus 200 ~~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~~-----~Ga------kvVavsD~~~~~~~G~i~d~~--Gld~~~l~~ 266 (421)
T 2yfq_A 200 RESAKRFGIKMEDAKIAVQGFGNVGTFTVKNIER-----QGG------KVCAIAEWDRNEGNYALYNEN--GIDFKELLA 266 (421)
T ss_dssp HHHHHHTTCCGGGSCEEEECCSHHHHHHHHHHHH-----TTC------CEEECCBCCSSSCSBCCBCSS--CCCHHHHHH
T ss_pred HHHHHhcCCCccCCEEEEECcCHHHHHHHHHHHH-----CCC------EEEEEEecCCCccceEEECCC--CCCHHHHHH
Confidence 7788889999999999999999999999998876 363 334489999 9999764 3432211 1
Q ss_pred hccccCCCC--------CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 361 WAHEHEPVN--------NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 361 fA~~~~~~~--------~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
+......+. +-.+ +-.++.||||=++. ++.+|++-.+.+ .-.+|.--+| |+
T Consensus 267 ~~~~~g~i~~~~~a~~i~~~~-~~~~~~DIliP~A~-~n~i~~~~A~~l----~ak~VvEgAN~P~ 326 (421)
T 2yfq_A 267 YKEANKTLIGFPGAERITDEE-FWTKEYDIIVPAAL-ENVITGERAKTI----NAKLVCEAANGPT 326 (421)
T ss_dssp HHHHHCC----------------------CEEECSC-SSCSCHHHHTTC----CCSEEECCSSSCS
T ss_pred HHHhcCCcccCCCceEeCccc-hhcCCccEEEEcCC-cCcCCcccHHHc----CCeEEEeCCcccc
Confidence 111111100 1112 23356777776654 457777766655 3456666666 44
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.041 Score=55.97 Aligned_cols=96 Identities=17% Similarity=0.256 Sum_probs=76.3
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
-.-+|-.|++..++..+.+|+..++|++|+|. .|..+|.+|... |. .+.+++++
T Consensus 139 ~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~-----gA-------tVtv~h~~------------- 193 (285)
T 3p2o_A 139 FLPCTPLGVMKLLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNA-----GA-------TVSVCHIK------------- 193 (285)
T ss_dssp CCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-------------
T ss_pred CCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchHHHHHHHHHHHC-----CC-------eEEEEeCC-------------
Confidence 45688899999999999999999999999876 899999998752 53 47777652
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC-CCC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPT 417 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt 417 (559)
..+|.+.++. +|++|...+.++.++.++|+ +.-+|+=++ ||.
T Consensus 194 -----------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~~~ 236 (285)
T 3p2o_A 194 -----------TKDLSLYTRQ--ADLIIVAAGCVNLLRSDMVK------EGVIVVDVGINRL 236 (285)
T ss_dssp -----------CSCHHHHHTT--CSEEEECSSCTTCBCGGGSC------TTEEEEECCCEEC
T ss_pred -----------chhHHHHhhc--CCEEEECCCCCCcCCHHHcC------CCeEEEEeccCcc
Confidence 1368888986 99999999999999999884 455666553 443
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.31 E-value=0.21 Score=54.07 Aligned_cols=177 Identities=15% Similarity=0.148 Sum_probs=115.1
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcC--CC--Cee----------ecCCcchhHHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT--TH--LVF----------NDDIQGTASVVLAGVVA 288 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~--~~--~~F----------nDDiQGTaaV~LAgll~ 288 (559)
+...|-..||..+.+..||+.=|-=+|++..-.. -+.+.|+. .. .|+ .++-.-||-=+.-++-.
T Consensus 162 El~r~~r~f~~~L~~~iGp~~DvpApDvGt~~~em~~~~~~y~~~~~~~~gvvTGKp~~~GGs~~r~~aTg~Gv~~~~~~ 241 (470)
T 2bma_A 162 EILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYGQYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLE 241 (470)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEEEECCSSCCHHHHHHHHHHHHHHHCCCSCSSSSCCGGGTCCTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhccCCCCCccCCCCCCChHHHHHHHHHHHHhcCCcccEEeCCCccCCCCCCccccchHHHHHHHHH
Confidence 4445666788888877899988889999874221 25566642 11 111 11223355555566777
Q ss_pred HHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh--------c--
Q 008629 289 ALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF--------K-- 358 (559)
Q Consensus 289 Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~--------k-- 358 (559)
+++..|.+|++.||+|-|.|..|...|+.|.+. |. +=+-+.|++|-|++.. .++.. |
T Consensus 242 ~l~~~G~~l~g~~vaVqG~GnVG~~~a~~L~~~-----Ga------kvVavsD~~G~i~dp~--Gid~edl~~l~~~k~~ 308 (470)
T 2bma_A 242 VLKSLNIPVEKQTAVVSGSGNVALYCVQKLLHL-----NV------KVLTLSDSNGYVYEPN--GFTHENLEFLIDLKEE 308 (470)
T ss_dssp HHHTTTCCGGGCEEEEECSSHHHHHHHHHHHHT-----TC------EECEEEETTEEEECSS--CCCHHHHHHHHHHHTT
T ss_pred HHHhccCCcCCCEEEEECCcHHHHHHHHHHHHC-----CC------EEEEEEeCCceEECCC--CCCHHHHHHHHHHHHh
Confidence 888889999999999999999999999998763 63 3333888888887653 34222 1
Q ss_pred -----hhhccccCCC--CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 359 -----KPWAHEHEPV--NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 359 -----~~fA~~~~~~--~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
..|+...+.. -+-.+.. .++.||||=+.. ++..|++-++.+-+ +.-.+|.--+| |+
T Consensus 309 ~~g~v~~~~~~~~~a~~v~~~~~~-~~~~DI~iPcA~-~~~I~~~na~~l~~-~~ak~V~EgAN~p~ 372 (470)
T 2bma_A 309 KKGRIKEYLNHSSTAKYFPNEKPW-GVPCTLAFPCAT-QNDVDLDQAKLLQK-NGCILVGEGANMPS 372 (470)
T ss_dssp TTCCGGGGGGTCSSCEECSSCCTT-SSCCSEEEECSS-TTCBCSHHHHHHHH-TTCCEEECCSSSCB
T ss_pred cCCcHHHHHhhcCCcEEecCcCee-ecCccEEEeccc-cCcCCHHHHHHHHh-cCcEEEEeCCCCCC
Confidence 1222110000 0001222 468999998885 67999999999854 35678988888 65
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.24 E-value=0.075 Score=52.71 Aligned_cols=121 Identities=17% Similarity=0.247 Sum_probs=75.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
..||.|+|+|..|.++|..+... |.. ..+++++|++ .+ .+...++.|- .....++.|+++.
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~-----g~~----~~~V~v~dr~----~~---~~~~l~~~~g--i~~~~~~~~~~~~- 63 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIAN-----GYD----PNRICVTNRS----LD---KLDFFKEKCG--VHTTQDNRQGALN- 63 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHT-----TCC----GGGEEEECSS----SH---HHHHHHHTTC--CEEESCHHHHHSS-
T ss_pred CCEEEEEcccHHHHHHHHHHHHC-----CCC----CCeEEEEeCC----HH---HHHHHHHHcC--CEEeCChHHHHhc-
Confidence 46899999999999999988763 652 2478888874 11 1222222221 1112578898885
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC--CCCcEEEecCCCCCCCCCCHHHHhcccCC--cEEEeeCCCCCCcee
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASF--NEKPLILALSNPTSQSECTAEEAYTWSKG--RAIFASGSPFDPFEY 448 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~--~erPIIFaLSNPt~~~EctpedA~~wt~G--~aifAsGSPF~pv~~ 448 (559)
+|++| ++..+ -..+++++.+..+ .++.+|...++..+ .++.-+|... +++-+ -|+.|...
T Consensus 64 -aDvVi-lav~p-~~~~~vl~~l~~~~l~~~~iiiS~~agi~-----~~~l~~~l~~~~~vvr~--mPn~p~~v 127 (280)
T 3tri_A 64 -ADVVV-LAVKP-HQIKMVCEELKDILSETKILVISLAVGVT-----TPLIEKWLGKASRIVRA--MPNTPSSV 127 (280)
T ss_dssp -CSEEE-ECSCG-GGHHHHHHHHHHHHHTTTCEEEECCTTCC-----HHHHHHHHTCCSSEEEE--ECCGGGGG
T ss_pred -CCeEE-EEeCH-HHHHHHHHHHHhhccCCCeEEEEecCCCC-----HHHHHHHcCCCCeEEEE--ecCChHHh
Confidence 88877 44444 4568888888764 56668888888774 3444455432 33322 36555543
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=95.21 E-value=0.041 Score=55.75 Aligned_cols=83 Identities=11% Similarity=0.210 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++..++..+ |+..++|++|+|. .|..+|.++... |. .+++++++
T Consensus 130 ~~~PcTp~gv~~lL~~~~--l~Gk~vvVvG~s~iVG~plA~lL~~~-----gA-------tVtv~~~~------------ 183 (276)
T 3ngx_A 130 FLVPATPRAVIDIMDYYG--YHENTVTIVNRSPVVGRPLSMMLLNR-----NY-------TVSVCHSK------------ 183 (276)
T ss_dssp SSCCHHHHHHHHHHHHHT--CCSCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT------------
T ss_pred CCCCCcHHHHHHHHHHhC--cCCCEEEEEcCChHHHHHHHHHHHHC-----CC-------eEEEEeCC------------
Confidence 445688899999999998 9999999999984 899999998752 53 47777652
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
..+|.+.++. +|++|...+.++.+++++++
T Consensus 184 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk 213 (276)
T 3ngx_A 184 ------------TKDIGSMTRS--SKIVVVAVGRPGFLNREMVT 213 (276)
T ss_dssp ------------CSCHHHHHHH--SSEEEECSSCTTCBCGGGCC
T ss_pred ------------cccHHHhhcc--CCEEEECCCCCccccHhhcc
Confidence 1468899987 99999999999999988873
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.036 Score=56.54 Aligned_cols=96 Identities=16% Similarity=0.166 Sum_probs=76.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++-.++..+.+++..++|++|+|. .|.-+|.++.. .| ..+++++++
T Consensus 137 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVIG~s~iVG~p~A~lL~~-----~g-------AtVtv~hs~------------ 192 (288)
T 1b0a_A 137 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL-----AG-------CTTTVTHRF------------ 192 (288)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT-----TT-------CEEEEECSS------------
T ss_pred CCCCCcHHHHHHHHHHcCCCCCCCEEEEECCChHHHHHHHHHHHH-----CC-------CeEEEEeCC------------
Confidence 556788899999999999999999999999995 69999888765 24 357777632
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
..+|.+.++. +|++|+..+.++.+++++|+ +.-+|+=++-|
T Consensus 193 ------------t~~L~~~~~~--ADIVI~Avg~p~lI~~~~vk------~GavVIDVgi~ 233 (288)
T 1b0a_A 193 ------------TKNLRHHVEN--ADLLIVAVGKPGFIPGDWIK------EGAIVIDVGIN 233 (288)
T ss_dssp ------------CSCHHHHHHH--CSEEEECSCCTTCBCTTTSC------TTCEEEECCCE
T ss_pred ------------chhHHHHhcc--CCEEEECCCCcCcCCHHHcC------CCcEEEEccCC
Confidence 0468889986 99999999999999998874 44566655544
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.029 Score=57.90 Aligned_cols=114 Identities=19% Similarity=0.249 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHH---------hCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC
Q 008629 280 SVVLAGVVAALKL---------IGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS 349 (559)
Q Consensus 280 aV~LAgll~Alr~---------~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~ 349 (559)
-+|-.|.+-.++- .|.++...++|++|+|. .|.-+|.++.. .| .+++++|+...-...
T Consensus 149 PcTp~a~v~ll~~~~~~~~~~~~g~~l~gk~vvVIG~G~iVG~~~A~~L~~-----~g-------AtVtv~nR~~~~l~~ 216 (320)
T 1edz_A 149 PCTPLAIVKILEFLKIYNNLLPEGNRLYGKKCIVINRSEIVGRPLAALLAN-----DG-------ATVYSVDVNNIQKFT 216 (320)
T ss_dssp CHHHHHHHHHHHHTTCSCTTSCTTCTTTTCEEEEECCCTTTHHHHHHHHHT-----TS-------CEEEEECSSEEEEEE
T ss_pred CCcHHHHHHHHHhhcccccccccCCCCCCCEEEEECCCcchHHHHHHHHHH-----CC-------CEEEEEeCchHHHHh
Confidence 3444555666666 68899999999999995 59888888864 24 358899987665555
Q ss_pred CcCCCchhchhhccccCC---C--CCHHHHhcccCCcEEEeccCCCCC-CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 350 RKDSLQHFKKPWAHEHEP---V--NNLLDAVKVIKPTILIGSSGVGRT-FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 350 R~~~l~~~k~~fA~~~~~---~--~~L~e~V~~vkPtvLIG~S~~~g~-Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
|.+.+... ++.... . .+|.+.++. +|++|+..+.++. ++.++|+ +.-+|+=++.|-
T Consensus 217 ra~~la~~----~~~~t~~~~t~~~~L~e~l~~--ADIVIsAtg~p~~vI~~e~vk------~GavVIDVgi~r 278 (320)
T 1edz_A 217 RGESLKLN----KHHVEDLGEYSEDLLKKCSLD--SDVVITGVPSENYKFPTEYIK------EGAVCINFACTK 278 (320)
T ss_dssp SCCCSSCC----CCEEEEEEECCHHHHHHHHHH--CSEEEECCCCTTCCBCTTTSC------TTEEEEECSSSC
T ss_pred HHHHHhhh----cccccccccccHhHHHHHhcc--CCEEEECCCCCcceeCHHHcC------CCeEEEEcCCCc
Confidence 54434311 121100 1 469999997 9999999999887 8998874 334666666654
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.19 Score=53.98 Aligned_cols=175 Identities=17% Similarity=0.164 Sum_probs=116.1
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHH---HHHHHcC---C--CCee----------ecCCcchhHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---T--HLVF----------NDDIQGTASVVLAGV 286 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~---lL~ryr~---~--~~~F----------nDDiQGTaaV~LAgl 286 (559)
|-..+...|+.++.+.-||+.-|-=+|++.. ... +.+.|+. . -.++ .+.-.-||-=+.-++
T Consensus 144 Eler~~r~f~~~l~~~iGp~~dvpA~DvGt~-~~~m~~~~~~y~~~~~~~~~g~vTGkp~~~GGs~~r~~aTg~Gv~~~~ 222 (440)
T 3aog_A 144 ELERLTRRYTSEIGILLGPDRDIPAPDVNTG-EREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGVFITA 222 (440)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEECCCCCCC-HHHHHHHHHHHHHhhCCCCCCeEeccchhhCCCCCCCcchHHHHHHHH
Confidence 4456788899999998889888989999874 222 5666632 1 1222 222234555556667
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC---Cchhchhhcc
Q 008629 287 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS---LQHFKKPWAH 363 (559)
Q Consensus 287 l~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~---l~~~k~~fA~ 363 (559)
-.+++..|.+|++.||+|.|.|..|...|++|.+. |. +=+-+.|++|-|++..+=+ |..++..+-.
T Consensus 223 ~~~~~~~g~~l~g~~vaVqGfGnVG~~~a~~L~e~-----Ga------kvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~ 291 (440)
T 3aog_A 223 AAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDH-----GA------RVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGG 291 (440)
T ss_dssp HHHHHHHTCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEECSSCEEECTTCCCHHHHHHHHHHTSS
T ss_pred HHHHHhcCCCccCCEEEEeccCHHHHHHHHHHHHC-----CC------EEEEEEcCCcEEECCCCCCHHHHHHHHHhcCC
Confidence 77888899999999999999999999999988763 63 3344999999998765311 2222222110
Q ss_pred --c--cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 364 --E--HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 364 --~--~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
+ ....-+-.+ +-.++.||||=++. ++.+|.+-++.+ .-.+|.--+| |+
T Consensus 292 i~~y~~a~~i~~~e-i~~~~~DIlvPcA~-~n~i~~~na~~l----~ak~VvEgAN~p~ 344 (440)
T 3aog_A 292 VRGYPKAEPLPAAD-FWGLPVEFLVPAAL-EKQITEQNAWRI----RARIVAEGANGPT 344 (440)
T ss_dssp STTCTTSEECCHHH-HTTCCCSEEEECSS-SSCBCTTTGGGC----CCSEEECCSSSCB
T ss_pred cccCCCceEcCchh-hhcCCCcEEEecCC-cCccchhhHHHc----CCcEEEecCcccc
Confidence 0 000012334 34578999997766 568888887776 4677877777 65
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.14 Score=53.57 Aligned_cols=102 Identities=16% Similarity=0.323 Sum_probs=62.9
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
++.+.+++|+|+|..|..++..+... |. ++|+++|+. ..| .....+.|--+.-...++.+.+
T Consensus 164 ~l~g~~VlIiGaG~iG~~~a~~l~~~-----G~------~~V~v~~r~----~~r---a~~la~~~g~~~~~~~~l~~~l 225 (404)
T 1gpj_A 164 SLHDKTVLVVGAGEMGKTVAKSLVDR-----GV------RAVLVANRT----YER---AVELARDLGGEAVRFDELVDHL 225 (404)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHH-----CC------SEEEEECSS----HHH---HHHHHHHHTCEECCGGGHHHHH
T ss_pred cccCCEEEEEChHHHHHHHHHHHHHC-----CC------CEEEEEeCC----HHH---HHHHHHHcCCceecHHhHHHHh
Confidence 57889999999999999998887653 64 578888874 111 1111111210111123677877
Q ss_pred cccCCcEEEeccCCC-CCCCHHHHHH--HH-cCCCCcEEEecCCCC
Q 008629 376 KVIKPTILIGSSGVG-RTFTKEVIEA--MA-SFNEKPLILALSNPT 417 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~-g~Ft~evv~~--Ma-~~~erPIIFaLSNPt 417 (559)
+ +.|++|-+++.+ ..++++.++. |. +...+-+++-++.|.
T Consensus 226 ~--~aDvVi~at~~~~~~~~~~~l~~~~lk~r~~~~~v~vdia~P~ 269 (404)
T 1gpj_A 226 A--RSDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR 269 (404)
T ss_dssp H--TCSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred c--CCCEEEEccCCCCceecHHHHHHHHHhccCCCCEEEEEccCCC
Confidence 6 489999887654 3567888887 43 222334555566553
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=95.04 E-value=0.053 Score=55.22 Aligned_cols=97 Identities=18% Similarity=0.239 Sum_probs=75.5
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++..++-.+.+|+..++|++|+|. .|..+|.+|... |. .+.+++++ .
T Consensus 139 ~~~PcTp~gv~~lL~~~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~-----gA-------tVtv~hs~-------T---- 195 (286)
T 4a5o_A 139 LLRPCTPKGIMTLLASTGADLYGMDAVVVGASNIVGRPMALELLLG-----GC-------TVTVTHRF-------T---- 195 (286)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECTTSTTHHHHHHHHHHT-----TC-------EEEEECTT-------C----
T ss_pred CCCCCCHHHHHHHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHC-----CC-------eEEEEeCC-------C----
Confidence 344678889999999999999999999999875 899999998752 53 46666542 1
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEec-CCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILAL-SNPT 417 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaL-SNPt 417 (559)
.+|.+.++. +|++|+..+.++.++.++|+ +.-+|+=+ +||.
T Consensus 196 -------------~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvgi~~~ 237 (286)
T 4a5o_A 196 -------------RDLADHVSR--ADLVVVAAGKPGLVKGEWIK------EGAIVIDVGINRQ 237 (286)
T ss_dssp -------------SCHHHHHHT--CSEEEECCCCTTCBCGGGSC------TTCEEEECCSCSS
T ss_pred -------------cCHHHHhcc--CCEEEECCCCCCCCCHHHcC------CCeEEEEeccccc
Confidence 368888986 99999999999999998884 44566655 3554
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=94.97 E-value=0.027 Score=56.61 Aligned_cols=86 Identities=22% Similarity=0.246 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
-.|++.+++..+.++++.+++|+|||.+|.+++..|.. .|. ++++++++. .++.+.+.. .+.
T Consensus 101 ~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~----~~~a~~la~---~~~ 162 (277)
T 3don_A 101 GIGYVNGLKQIYEGIEDAYILILGAGGASKGIANELYK-----IVR------PTLTVANRT----MSRFNNWSL---NIN 162 (277)
T ss_dssp HHHHHHHHHHHSTTGGGCCEEEECCSHHHHHHHHHHHT-----TCC------SCCEEECSC----GGGGTTCCS---CCE
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHHHHHHHH---hcc
Confidence 34677888888999999999999999888888777754 365 578888875 222222321 111
Q ss_pred cccCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 363 HEHEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 363 ~~~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
. ....++.++++. +|++|-++..|
T Consensus 163 ~--~~~~~~~~~~~~--aDiVInaTp~G 186 (277)
T 3don_A 163 K--INLSHAESHLDE--FDIIINTTPAG 186 (277)
T ss_dssp E--ECHHHHHHTGGG--CSEEEECCC--
T ss_pred c--ccHhhHHHHhcC--CCEEEECccCC
Confidence 0 112346666664 89999776654
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=94.92 E-value=0.015 Score=51.50 Aligned_cols=88 Identities=16% Similarity=0.228 Sum_probs=50.7
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
|..+|+.+++-.+-+.. ..||+|+|+|..|..++..+.. .|. + ++++|+. .++ ...
T Consensus 4 ~~~sv~~~a~~~~~~~~-----~~~v~iiG~G~iG~~~a~~l~~-----~g~------~-v~v~~r~----~~~---~~~ 59 (144)
T 3oj0_A 4 GKVSIPSIVYDIVRKNG-----GNKILLVGNGMLASEIAPYFSY-----PQY------K-VTVAGRN----IDH---VRA 59 (144)
T ss_dssp CCCSHHHHHHHHHHHHC-----CCEEEEECCSHHHHHHGGGCCT-----TTC------E-EEEEESC----HHH---HHH
T ss_pred CcccHHHHHHHHHHhcc-----CCEEEEECCCHHHHHHHHHHHh-----CCC------E-EEEEcCC----HHH---HHH
Confidence 44455555543333322 7899999999999888776643 243 4 8888864 111 222
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
..+.|.-+.....++.++++. .|++|-+++.+
T Consensus 60 ~a~~~~~~~~~~~~~~~~~~~--~Divi~at~~~ 91 (144)
T 3oj0_A 60 FAEKYEYEYVLINDIDSLIKN--NDVIITATSSK 91 (144)
T ss_dssp HHHHHTCEEEECSCHHHHHHT--CSEEEECSCCS
T ss_pred HHHHhCCceEeecCHHHHhcC--CCEEEEeCCCC
Confidence 222221111124578888875 88888766543
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.17 Score=53.96 Aligned_cols=175 Identities=20% Similarity=0.180 Sum_probs=112.2
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHH---HHHHHcC---C--CCeeecC----------CcchhHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYGT---T--HLVFNDD----------IQGTASVVLAGV 286 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~---lL~ryr~---~--~~~FnDD----------iQGTaaV~LAgl 286 (559)
+-..+...|+.++.+.-||+.-|-=+|++.. ... +.+.|+. . ..++.-+ -.-||-=+.-++
T Consensus 119 e~~r~~r~f~~~l~~~iG~~~dvpA~D~Gt~-~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~ 197 (421)
T 1v9l_A 119 ELEELSRGYARAIAPLIGDVVDIPAPDVGTN-AQIMAWMVDEYSKIKGYNVPGVFTSKPPELWGNPVREYATGFGVAVAT 197 (421)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEEEECCTTCC-HHHHHHHHHHHHHHHTSCCGGGSCSCCSSSSCCGGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEeCCCCCCC-HHHHHHHHHHHHHHhCCCCCCeEeccchhhCCCCCcccchHHHHHHHH
Confidence 4456788899999998899999999999973 222 3466632 1 1222221 122444445566
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC---Cchhchhhcc
Q 008629 287 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS---LQHFKKPWAH 363 (559)
Q Consensus 287 l~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~---l~~~k~~fA~ 363 (559)
-.+++..|.+|++.||+|.|.|..|...|++|.+ .|. +=+-+.|++|-|++..+=+ |..++..+-.
T Consensus 198 ~~~~~~~g~~l~gk~vaVqG~GnVG~~aa~~L~e-----~Ga------kVVavsD~~G~i~dp~GlD~~~l~~~k~~~g~ 266 (421)
T 1v9l_A 198 REMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEK-----MGA------KVIAVSDINGVAYRKEGLNVELIQKNKGLTGP 266 (421)
T ss_dssp HHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHT-----TTC------EEEEEECSSCEEECTTCCCTHHHHHTTTSCHH
T ss_pred HHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH-----CCC------EEEEEECCCcEEECCCCCCHHHHHHHHHhhCC
Confidence 6778889999999999999999999999988765 353 3344899999998764211 2222221110
Q ss_pred -------cc---CCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 364 -------EH---EPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 364 -------~~---~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
.. ....+-.| +-.++.|+|+=+.. ++.+|++-++.+ .-.||.--+| |+
T Consensus 267 ~~v~~y~~~~~~~~~~~~~~-~~~~~~Dil~P~A~-~~~I~~~~a~~l----~ak~V~EgAN~p~ 325 (421)
T 1v9l_A 267 ALVELFTTKDNAEFVKNPDA-IFKLDVDIFVPAAI-ENVIRGDNAGLV----KARLVVEGANGPT 325 (421)
T ss_dssp HHHHHHHHTSCCCCCSSTTG-GGGCCCSEEEECSC-SSCBCTTTTTTC----CCSEEECCSSSCB
T ss_pred ccccccccccCceEeCCchh-hhcCCccEEEecCc-CCccchhhHHHc----CceEEEecCCCcC
Confidence 00 11101123 33468899997764 668888777766 4678888888 55
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.06 Score=55.16 Aligned_cols=96 Identities=24% Similarity=0.314 Sum_probs=75.5
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS 353 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~ 353 (559)
..|-.-+|-.|++..++-.+.+|+..++|++|+|. .|..+|.+|... |. .+++++++ .
T Consensus 141 ~~~~~PcTp~gv~~lL~~~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~-----gA-------tVtv~~~~-------T-- 199 (300)
T 4a26_A 141 EPPFTPCTAKGVIVLLKRCGIEMAGKRAVVLGRSNIVGAPVAALLMKE-----NA-------TVTIVHSG-------T-- 199 (300)
T ss_dssp CCSCCCHHHHHHHHHHHHHTCCCTTCEEEEECCCTTTHHHHHHHHHHT-----TC-------EEEEECTT-------S--
T ss_pred cCCCCCCCHHHHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHC-----CC-------eEEEEeCC-------C--
Confidence 34556788899999999999999999999999876 899999998762 53 47788762 1
Q ss_pred CchhchhhccccCCCCCHH--HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 354 LQHFKKPWAHEHEPVNNLL--DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 354 l~~~k~~fA~~~~~~~~L~--e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.+|. +.++. +|++|...+.++.++.++|+ +.-+|+=++
T Consensus 200 ---------------~~l~l~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDvg 239 (300)
T 4a26_A 200 ---------------STEDMIDYLRT--ADIVIAAMGQPGYVKGEWIK------EGAAVVDVG 239 (300)
T ss_dssp ---------------CHHHHHHHHHT--CSEEEECSCCTTCBCGGGSC------TTCEEEECC
T ss_pred ---------------CCchhhhhhcc--CCEEEECCCCCCCCcHHhcC------CCcEEEEEe
Confidence 1354 88886 99999999999999998874 455666553
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.15 Score=55.30 Aligned_cols=124 Identities=15% Similarity=0.239 Sum_probs=88.2
Q ss_pred cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC
Q 008629 273 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 352 (559)
Q Consensus 273 DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~ 352 (559)
+.+.|.......|+ .+.+|..+...+++|+|.|..|.++|+.+... |+ +++.+|++.. +.
T Consensus 234 r~~~~~~~~l~~gw---~r~~~~~l~GktVgIIG~G~IG~~vA~~l~~~-----G~-------~Viv~d~~~~----~~- 293 (479)
T 1v8b_A 234 DNVYGCRHSLPDGL---MRATDFLISGKIVVICGYGDVGKGCASSMKGL-----GA-------RVYITEIDPI----CA- 293 (479)
T ss_dssp HHHHHHHHHHHHHH---HHHHCCCCTTSEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSCHH----HH-
T ss_pred hchHhHHHHHhhhh---hhccccccCCCEEEEEeeCHHHHHHHHHHHhC-----cC-------EEEEEeCChh----hH-
Confidence 34445555555662 35688899999999999999999999998753 64 6888887521 00
Q ss_pred CCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 008629 353 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 429 (559)
Q Consensus 353 ~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~ 429 (559)
+......| ...+|.|+++. .|++|.+....+.++++.++.|. +.-||.=.|.-. .|+.-++..+
T Consensus 294 -~~a~~~g~-----~~~~l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK---~gailiNvgrg~--~EId~~aL~~ 357 (479)
T 1v8b_A 294 -IQAVMEGF-----NVVTLDEIVDK--GDFFITCTGNVDVIKLEHLLKMK---NNAVVGNIGHFD--DEIQVNELFN 357 (479)
T ss_dssp -HHHHTTTC-----EECCHHHHTTT--CSEEEECCSSSSSBCHHHHTTCC---TTCEEEECSSTT--TSBCHHHHHT
T ss_pred -HHHHHcCC-----EecCHHHHHhc--CCEEEECCChhhhcCHHHHhhcC---CCcEEEEeCCCC--ccccchhhhc
Confidence 01011111 12479999985 99999998778899999999886 667888787754 6777776665
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=94.38 E-value=0.094 Score=57.05 Aligned_cols=110 Identities=16% Similarity=0.234 Sum_probs=78.3
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
|+......|+ .+.+|..+...+++|+|.|..|.++|+.+.. .|+ +++.+|++.. + .+..
T Consensus 258 ~~~~~l~~gw---~~~~g~~L~GktVgIIG~G~IG~~vA~~l~~-----~G~-------~V~v~d~~~~----~--~~~a 316 (494)
T 3d64_A 258 GCRESLVDGI---KRATDVMIAGKIAVVAGYGDVGKGCAQSLRG-----LGA-------TVWVTEIDPI----C--ALQA 316 (494)
T ss_dssp HHHTTHHHHH---HHHHCCCCTTCEEEEECCSHHHHHHHHHHHT-----TTC-------EEEEECSCHH----H--HHHH
T ss_pred hhhhhhhhhh---hhccccccCCCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEEeCChH----h--HHHH
Confidence 4444444552 3678999999999999999999999998864 263 5888887521 0 0110
Q ss_pred hchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 357 FKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 357 ~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.. ..-...+|.|+++. .|+++......++++++.++.|. +.-||.=.+...
T Consensus 317 ~~-----~G~~~~~l~ell~~--aDiVi~~~~t~~lI~~~~l~~MK---~gAilINvgrg~ 367 (494)
T 3d64_A 317 AM-----EGYRVVTMEYAADK--ADIFVTATGNYHVINHDHMKAMR---HNAIVCNIGHFD 367 (494)
T ss_dssp HT-----TTCEECCHHHHTTT--CSEEEECSSSSCSBCHHHHHHCC---TTEEEEECSSSS
T ss_pred HH-----cCCEeCCHHHHHhc--CCEEEECCCcccccCHHHHhhCC---CCcEEEEcCCCc
Confidence 00 01112479999985 99999998778899999999996 667888787754
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.59 Score=49.81 Aligned_cols=175 Identities=18% Similarity=0.173 Sum_probs=113.2
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCc--HHHHHHHHcC---C--CCeeecC----------CcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHN--AFELLAKYGT---T--HLVFNDD----------IQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~--Af~lL~ryr~---~--~~~FnDD----------iQGTaaV~LAgll 287 (559)
+-..+...|+.++.+.-||+.-|-=+|++..- ---+.+.|+. . ..++--+ -.-||-=+.-++-
T Consensus 118 e~~r~~r~f~~~l~~~ig~~~dvpa~D~gt~~~~m~~~~~~y~~~~~~~~~~~~tGk~~~~GGs~~r~~aTg~Gv~~~~~ 197 (415)
T 2tmg_A 118 ELERLSRRFFREIQVIIGPYNDIPAPDVNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAG 197 (415)
T ss_dssp HHHHHHHHHHHHTGGGCBTTTEECCBCTTCCHHHHHHHHHHHHHHHSSCCCCSCSSCCGGGTCCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCcEEeCCCCCCCHHHHHHHHHHHHHhhCCCCCCeEecCchhhCCCCCcCcchHHHHHHHHH
Confidence 44566888899998888888888889998752 1124456632 1 1233221 1235544555667
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc-hhhccccC
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHE 366 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k-~~fA~~~~ 366 (559)
.+++..|.+|+..||+|.|.|..|...|++|.+ +.|. +=+-+.|++|-+++..+ |+... +.+.....
T Consensus 198 ~~~~~~g~~l~g~~vaVqG~GnVG~~~a~~L~e----~~Ga------kvVavsD~~G~i~dp~G--ld~~~l~~~~~~~g 265 (415)
T 2tmg_A 198 LAMDVLGIDPKKATVAVQGFGNVGQFAALLISQ----ELGS------KVVAVSDSRGGIYNPEG--FDVEELIRYKKEHG 265 (415)
T ss_dssp HHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHH----TTCC------EEEEEECSSCEEECTTC--CCHHHHHHHHHHSS
T ss_pred HHHHHcCCCcCCCEEEEECCcHHHHHHHHHHHH----hcCC------EEEEEEeCCCeEECCCC--CCHHHHHHHHHhhC
Confidence 778889999999999999999999999988865 1253 33448999999887642 33211 11111111
Q ss_pred CC--------CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 367 PV--------NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 367 ~~--------~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
.+ -+-.| +-.++.|+||=+.. ++..|++-.+.+ .-.+|.--+| |+
T Consensus 266 ~l~~y~~a~~~~~~e-il~~~~DIliP~A~-~n~i~~~~a~~l----~ak~V~EgAN~p~ 319 (415)
T 2tmg_A 266 TVVTYPKGERITNEE-LLELDVDILVPAAL-EGAIHAGNAERI----KAKAVVEGANGPT 319 (415)
T ss_dssp CSTTCSSSEEECHHH-HTTCSCSEEEECSS-TTSBCHHHHTTC----CCSEEECCSSSCB
T ss_pred CcccCCCceEcCchh-hhcCCCcEEEecCC-cCccCcccHHHc----CCeEEEeCCCccc
Confidence 10 12334 44578899997776 568888887766 4567777777 55
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=0.072 Score=52.63 Aligned_cols=98 Identities=19% Similarity=0.272 Sum_probs=57.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh-------hccc--------
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-------WAHE-------- 364 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~-------fA~~-------- 364 (559)
.||.|+|+|..|.+||..+..+ |. +++++|++ .+ .++..+.. +...
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~-----G~-------~V~l~d~~----~~---~~~~~~~~i~~~~~~~~~~g~~~~~~~ 65 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFH-----GF-------AVTAYDIN----TD---ALDAAKKRFEGLAAVYEKEVAGAADGA 65 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSS----HH---HHHHHHHHHHHHHHHHHHHSTTCTTTH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEeCC----HH---HHHHHHHHHHHHHHHHHHhcccCCHHH
Confidence 6899999999999999998763 64 68888874 11 12111111 1000
Q ss_pred -------cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 008629 365 -------HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 419 (559)
Q Consensus 365 -------~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 419 (559)
.....++.|+++. .|++|=+-...-...+++++.+......-.|+ .||-++.
T Consensus 66 ~~~~~~~i~~~~~~~~~~~~--aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il-~s~tS~~ 124 (283)
T 4e12_A 66 AQKALGGIRYSDDLAQAVKD--ADLVIEAVPESLDLKRDIYTKLGELAPAKTIF-ATNSSTL 124 (283)
T ss_dssp HHHHHHHCEEESCHHHHTTT--CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEE-EECCSSS
T ss_pred HHHHHcCeEEeCCHHHHhcc--CCEEEEeccCcHHHHHHHHHHHHhhCCCCcEE-EECCCCC
Confidence 0113578888875 89888433211114566777776655444444 3554443
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.044 Score=55.19 Aligned_cols=87 Identities=23% Similarity=0.257 Sum_probs=56.6
Q ss_pred HHHHHHHHHhC-CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 284 AGVVAALKLIG-GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 284 Agll~Alr~~g-~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
.|++.+++..| ..++..+++|+|||.+|.+++..|.. .|. ++++++|+. .+| .......+.
T Consensus 125 ~G~~~~l~~~~~~~l~~~~vlVlGaGg~g~aia~~L~~-----~G~------~~V~v~nR~----~~k---a~~la~~~~ 186 (297)
T 2egg_A 125 LGYVQALEEEMNITLDGKRILVIGAGGGARGIYFSLLS-----TAA------ERIDMANRT----VEK---AERLVREGD 186 (297)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT-----TTC------SEEEEECSS----HHH---HHHHHHHSC
T ss_pred HHHHHHHHHhCCCCCCCCEEEEECcHHHHHHHHHHHHH-----CCC------CEEEEEeCC----HHH---HHHHHHHhh
Confidence 78888888877 78999999999999888888777754 364 578888874 121 111111221
Q ss_pred c---ccCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 363 H---EHEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 363 ~---~~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
. ......++.++++. .|++|-+++.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~--aDivIn~t~~~ 215 (297)
T 2egg_A 187 ERRSAYFSLAEAETRLAE--YDIIINTTSVG 215 (297)
T ss_dssp SSSCCEECHHHHHHTGGG--CSEEEECSCTT
T ss_pred hccCceeeHHHHHhhhcc--CCEEEECCCCC
Confidence 1 00011245666664 89999887755
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=94.12 E-value=0.072 Score=53.14 Aligned_cols=110 Identities=21% Similarity=0.212 Sum_probs=72.4
Q ss_pred HHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCC
Q 008629 290 LKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVN 369 (559)
Q Consensus 290 lr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~ 369 (559)
++..+..|.+.+++|+|+|..|..+|+.+.. .|. +++.+|+.- .+ +...+..-++. ....
T Consensus 148 ~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~-----~G~-------~V~~~d~~~----~~---~~~~~~~g~~~-~~~~ 207 (300)
T 2rir_A 148 IQHTDYTIHGSQVAVLGLGRTGMTIARTFAA-----LGA-------NVKVGARSS----AH---LARITEMGLVP-FHTD 207 (300)
T ss_dssp HHTCSSCSTTSEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESSH----HH---HHHHHHTTCEE-EEGG
T ss_pred HHhcCCCCCCCEEEEEcccHHHHHHHHHHHH-----CCC-------EEEEEECCH----HH---HHHHHHCCCeE-Echh
Confidence 3456789999999999999999999998864 263 688888751 11 11111000110 0114
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHH
Q 008629 370 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 427 (559)
Q Consensus 370 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA 427 (559)
+|.|.++. .|++|-+.. .+.++++.++.|. +..+|+=+|.-. .+|..+.+
T Consensus 208 ~l~~~l~~--aDvVi~~~p-~~~i~~~~~~~mk---~g~~lin~a~g~--~~~~~~~a 257 (300)
T 2rir_A 208 ELKEHVKD--IDICINTIP-SMILNQTVLSSMT---PKTLILDLASRP--GGTDFKYA 257 (300)
T ss_dssp GHHHHSTT--CSEEEECCS-SCCBCHHHHTTSC---TTCEEEECSSTT--CSBCHHHH
T ss_pred hHHHHhhC--CCEEEECCC-hhhhCHHHHHhCC---CCCEEEEEeCCC--CCcCHHHH
Confidence 68888874 999997766 4799999888775 567888888632 34445443
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.63 Score=50.09 Aligned_cols=176 Identities=18% Similarity=0.191 Sum_probs=112.5
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHH--HHHHHHcC---C--CCeeec----------CCcchhHHHHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAF--ELLAKYGT---T--HLVFND----------DIQGTASVVLAGVV 287 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af--~lL~ryr~---~--~~~FnD----------DiQGTaaV~LAgll 287 (559)
+-..|-..||..+.+..||+.-|-=+|++..-.. -+.+.|++ . .-++-. .-.-||-=+.-++-
T Consensus 139 e~~r~~r~f~~~L~~~ig~~~dvpA~DvGt~~~~m~~~~~~y~~~~~~~~~g~~tGk~~~~GGs~~r~~aTg~Gv~~~~~ 218 (449)
T 1bgv_A 139 EVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQYRKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVE 218 (449)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEEEECBTTBCHHHHHHHHHHHHHHHTSCCGGGSSSCCGGGTCCTTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhheeCCCCcCCCCCCCCCHHHHHHHHHHHHHhcCCCcCceEecCCcccCCCCCcccchhHHHHHHHH
Confidence 4445556688888778899999999999876221 13445532 1 122211 11235545555667
Q ss_pred HHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC-chh--------c
Q 008629 288 AALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-QHF--------K 358 (559)
Q Consensus 288 ~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l-~~~--------k 358 (559)
.+++..|.+|+..||+|-|.|..|...|++|.+. |. +=+-+.|++|-|++.. .+ ++. +
T Consensus 219 ~~~~~~G~~l~g~~v~VqG~GnVG~~~a~~L~~~-----Ga------kvVavsD~~G~i~dp~--Gi~d~edi~~l~~~k 285 (449)
T 1bgv_A 219 AVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL-----GA------KAVTLSGPDGYIYDPE--GITTEEKINYMLEMR 285 (449)
T ss_dssp HHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH-----TC------EEEEEEETTEEEECTT--CSCSHHHHHHHHHHH
T ss_pred HHHHHccCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEeCCceEECCC--cCCCHHHHHHHHHHH
Confidence 7788889999999999999999999999888764 53 3444789988888753 34 211 1
Q ss_pred -------hhhccc--cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 359 -------KPWAHE--HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 359 -------~~fA~~--~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
..|+.. .+.. +-.+.. .++.|+|+=+.. ++..|++-.+.+.. |.-.+|.-=+| |+
T Consensus 286 ~~~~g~v~~y~~~~~a~~i-~~~e~~-~~~~Dil~P~A~-~~~I~~~na~~l~a-~g~kiV~EgAN~p~ 350 (449)
T 1bgv_A 286 ASGRNKVQDYADKFGVQFF-PGEKPW-GQKVDIIMPCAT-QNDVDLEQAKKIVA-NNVKYYIEVANMPT 350 (449)
T ss_dssp HHCCCCTHHHHHHHTCEEE-ETCCGG-GSCCSEEECCSC-TTCBCHHHHHHHHH-TTCCEEECCSSSCB
T ss_pred hccCCChhhcccccCCEEe-Cchhhh-cCCcceeecccc-ccccchhhHHHHHh-cCCeEEEeCCCCcC
Confidence 111110 0000 001122 468999997775 67999999999864 23468888888 65
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.02 E-value=0.073 Score=52.63 Aligned_cols=100 Identities=22% Similarity=0.344 Sum_probs=62.0
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE 364 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~ 364 (559)
|++.+++.. .+++ +++|+|||.+|.+++..|.. .|. ++|+++|+. .+|.+.|.. .|..
T Consensus 97 G~~~~l~~~--~~~~-~vliiGaGg~a~ai~~~L~~-----~G~------~~I~v~nR~----~~ka~~la~---~~~~- 154 (253)
T 3u62_A 97 GVVKSLEGV--EVKE-PVVVVGAGGAARAVIYALLQ-----MGV------KDIWVVNRT----IERAKALDF---PVKI- 154 (253)
T ss_dssp HHHHHTTTC--CCCS-SEEEECCSHHHHHHHHHHHH-----TTC------CCEEEEESC----HHHHHTCCS---SCEE-
T ss_pred HHHHHHHhc--CCCC-eEEEECcHHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHHHHHHHH---Hccc-
Confidence 677777654 5678 99999999999888887765 364 679999884 222222221 1211
Q ss_pred cCCCCCHHHHhcccCCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 365 HEPVNNLLDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 365 ~~~~~~L~e~V~~vkPtvLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
....++.++++. +|++|-++..+ ..+.++.++ +..+|+-++-
T Consensus 155 -~~~~~~~~~~~~--aDiVInatp~gm~p~~~~i~~~~l~------~~~~V~Divy 201 (253)
T 3u62_A 155 -FSLDQLDEVVKK--AKSLFNTTSVGMKGEELPVSDDSLK------NLSLVYDVIY 201 (253)
T ss_dssp -EEGGGHHHHHHT--CSEEEECSSTTTTSCCCSCCHHHHT------TCSEEEECSS
T ss_pred -CCHHHHHhhhcC--CCEEEECCCCCCCCCCCCCCHHHhC------cCCEEEEeeC
Confidence 112467788875 99999766533 124444432 4566666543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.11 Score=52.70 Aligned_cols=98 Identities=14% Similarity=0.292 Sum_probs=75.6
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++-.++..|.+|+..++|++|+|. .|.-+|.++.. .|. ...+++++++
T Consensus 136 ~~~PcTp~gi~~ll~~~~i~l~gk~vvVvG~s~iVG~p~A~lL~~-----~g~-----~atVtv~h~~------------ 193 (281)
T 2c2x_A 136 APLPCTPRGIVHLLRRYDISIAGAHVVVIGRGVTVGRPLGLLLTR-----RSE-----NATVTLCHTG------------ 193 (281)
T ss_dssp CCCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHTS-----TTT-----CCEEEEECTT------------
T ss_pred CCCCChHHHHHHHHHHcCCCCCCCEEEEECCCcHHHHHHHHHHhc-----CCC-----CCEEEEEECc------------
Confidence 556778888999999999999999999999996 58888877753 210 1357777532
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
..+|.+.++. +|++|+..+.++.+++++|+ +.-+|+=++-|
T Consensus 194 ------------t~~L~~~~~~--ADIVI~Avg~p~~I~~~~vk------~GavVIDVgi~ 234 (281)
T 2c2x_A 194 ------------TRDLPALTRQ--ADIVVAAVGVAHLLTADMVR------PGAAVIDVGVS 234 (281)
T ss_dssp ------------CSCHHHHHTT--CSEEEECSCCTTCBCGGGSC------TTCEEEECCEE
T ss_pred ------------hhHHHHHHhh--CCEEEECCCCCcccCHHHcC------CCcEEEEccCC
Confidence 1468899986 99999999999999999985 44577766655
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=93.91 E-value=0.21 Score=52.14 Aligned_cols=162 Identities=19% Similarity=0.190 Sum_probs=103.0
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcH--HHHHHHHcC---CCCee---ecCCcchhHHHHHHHHHHHHHhCC-
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA--FELLAKYGT---THLVF---NDDIQGTASVVLAGVVAALKLIGG- 295 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~A--f~lL~ryr~---~~~~F---nDDiQGTaaV~LAgll~Alr~~g~- 295 (559)
+-++.+..|..++.+..|+ -|-=+|++..-. --+.+.|+. +-..+ .|--.-||-=+.-++-.+++..|.
T Consensus 94 ~~e~~~r~~~~~~~~l~g~--~ipa~D~gt~~~~m~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~~~~~~~~~~G~~ 171 (355)
T 1c1d_A 94 TWARILRIHAENIDKLSGN--YWTGPDVNTNSADMDTLNDTTEFVFGRSLERGGAGSSAFTTAVGVFEAMKATVAHRGLG 171 (355)
T ss_dssp HHHHHHHHHHHHHHHTTTS--EEEEECTTCCHHHHHHHHHHCSCBCCCCGGGTSCCCCHHHHHHHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHhcCC--cccCCCCCCCHHHHHHHHHhcCeeeccchhhCCCCCchhHHHHHHHHHHHHHHHhcCCC
Confidence 3455677788888887765 467789976322 125566651 11111 111122455555567777888898
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-CCCCCHHHH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDA 374 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~ 374 (559)
.|+..+++|.|.|..|..+|+.+.. .|. ++++.|++ ..| ..|+... ...-++.+.
T Consensus 172 ~L~GktV~I~G~GnVG~~~A~~l~~-----~Ga-------kVvvsD~~----~~~--------~~~a~~~ga~~v~~~el 227 (355)
T 1c1d_A 172 SLDGLTVLVQGLGAVGGSLASLAAE-----AGA-------QLLVADTD----TER--------VAHAVALGHTAVALEDV 227 (355)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSC----HHH--------HHHHHHTTCEECCGGGG
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHH-----CCC-------EEEEEeCC----ccH--------HHHHHhcCCEEeChHHh
Confidence 8999999999999999999998764 364 57788864 111 1222211 011134454
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
.+ ++.|+|+=+ +.++.+|++-++.|. -.+|.=-+| |+.
T Consensus 228 l~-~~~DIliP~-A~~~~I~~~~~~~lk----~~iVie~AN~p~t 266 (355)
T 1c1d_A 228 LS-TPCDVFAPC-AMGGVITTEVARTLD----CSVVAGAANNVIA 266 (355)
T ss_dssp GG-CCCSEEEEC-SCSCCBCHHHHHHCC----CSEECCSCTTCBC
T ss_pred hc-CccceecHh-HHHhhcCHHHHhhCC----CCEEEECCCCCCC
Confidence 43 478999954 456799999999983 468888887 653
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=93.24 E-value=0.15 Score=53.20 Aligned_cols=165 Identities=16% Similarity=0.147 Sum_probs=100.3
Q ss_pred CCCc-chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcCCC-CeeecC---------CcchhHHHHHHHHHH
Q 008629 221 RPSA-EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTH-LVFNDD---------IQGTASVVLAGVVAA 289 (559)
Q Consensus 221 ~P~~-~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~~~-~~FnDD---------iQGTaaV~LAgll~A 289 (559)
||.. .-++.+..|...+.+..|+ -|-=+|++..- +.+...-+++ ++---- ..-||-=+.-++..+
T Consensus 86 dP~~~~~~~~~r~~~~~~~~l~g~--~i~A~D~Gt~~--~~m~~l~~~~~~~tGK~~~~ggs~~~~~aTg~GV~~~~~~~ 161 (364)
T 1leh_A 86 DPFADKNEDMFRALGRFIQGLNGR--YITAEDVGTTV--DDMDLIHQETDYVTGISPAFGSSGNPSPVTAYGVYRGMKAA 161 (364)
T ss_dssp CTTTTCCHHHHHHHHHHHHTTTTS--EEBCBCTTCCH--HHHHHHHTTCSCBCSCCHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhcCc--eEEcccCCCCH--HHHHHHHHhcchhcccccccCCCCCcccchhhHHHHHHHHH
Confidence 5544 4566778888888888875 46778887543 2334433333 111111 123444444455566
Q ss_pred HHHh-CC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC
Q 008629 290 LKLI-GG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP 367 (559)
Q Consensus 290 lr~~-g~-~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~ 367 (559)
++.. |. +|++.+|+|.|+|..|..+|+.+.+. |. ++++.|++ . +.+..+...|- ..
T Consensus 162 ~~~~~G~~~L~GktV~V~G~G~VG~~~A~~L~~~-----Ga-------kVvv~D~~----~---~~l~~~a~~~g---a~ 219 (364)
T 1leh_A 162 AKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-----GA-------KLVVTDVN----K---AAVSAAVAEEG---AD 219 (364)
T ss_dssp HHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC----H---HHHHHHHHHHC---CE
T ss_pred HHhhccccCCCcCEEEEECchHHHHHHHHHHHHC-----CC-------EEEEEcCC----H---HHHHHHHHHcC---CE
Confidence 6664 76 89999999999999999999998653 64 47788853 1 11333333221 11
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 368 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 368 ~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
.-++.+... .+.|++|=++ ..+.++++.++.| .-.+|.--+| |+
T Consensus 220 ~v~~~~ll~-~~~DIvip~a-~~~~I~~~~~~~l----g~~iV~e~An~p~ 264 (364)
T 1leh_A 220 AVAPNAIYG-VTCDIFAPCA-LGAVLNDFTIPQL----KAKVIAGSADNQL 264 (364)
T ss_dssp ECCGGGTTT-CCCSEEEECS-CSCCBSTTHHHHC----CCSEECCSCSCCB
T ss_pred EEChHHHhc-cCCcEeeccc-hHHHhCHHHHHhC----CCcEEEeCCCCCc
Confidence 113333332 5789999654 5669999988888 3467776666 54
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=93.00 E-value=0.59 Score=49.14 Aligned_cols=188 Identities=12% Similarity=0.061 Sum_probs=111.2
Q ss_pred CCCCeeecCCc---chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 266 TTHLVFNDDIQ---GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 266 ~~~~~FnDDiQ---GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
..+.+.|.--- .+|=-+++.+++..|-.|..|.+.+|.|+|.|..|-.+|+.+... |+ +++.+|+
T Consensus 80 ~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~~d~ 147 (380)
T 2o4c_A 80 AGIAWSSAPGCNARGVVDYVLGCLLAMAEVRGADLAERTYGVVGAGQVGGRLVEVLRGL-----GW-------KVLVCDP 147 (380)
T ss_dssp HTCEEECCTTTTHHHHHHHHHHHHHHHHHHHTCCGGGCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECH
T ss_pred CCCEEEeCCCcChHHHHHHHHHHHHHHHhhhhcccCCCEEEEEeCCHHHHHHHHHHHHC-----CC-------EEEEEcC
Confidence 35666664322 334458999999999999999999999999999999999988653 64 5788886
Q ss_pred cCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc---C-----CCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 343 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS---G-----VGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 343 ~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S---~-----~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
..- . . . ......+|.|+++. .|+++=.- . ..+.|+++.++.|. +..++.=.|
T Consensus 148 ~~~------~-~-----~---~g~~~~~l~ell~~--aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~s 207 (380)
T 2o4c_A 148 PRQ------A-R-----E---PDGEFVSLERLLAE--ADVISLHTPLNRDGEHPTRHLLDEPRLAALR---PGTWLVNAS 207 (380)
T ss_dssp HHH------H-H-----S---TTSCCCCHHHHHHH--CSEEEECCCCCSSSSSCCTTSBCHHHHHTSC---TTEEEEECS
T ss_pred Chh------h-h-----c---cCcccCCHHHHHHh--CCEEEEeccCccccccchhhhcCHHHHhhCC---CCcEEEECC
Confidence 411 0 0 0 01123579999985 89887542 1 34688999998886 567887677
Q ss_pred CCCCCCCCCHHHHhcccCCcEEEeeCCCC--CCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHH
Q 008629 415 NPTSQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALA 492 (559)
Q Consensus 415 NPt~~~EctpedA~~wt~G~aifAsGSPF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA 492 (559)
.-.---|-.-.+|+ .+|+..-|.=-=| +|. .+.. .. + +|+++-|=++--...+ -..|...+++.+.
T Consensus 208 RG~vvd~~aL~~aL--~~g~i~~A~LDV~~~EP~-~~~~-l~--~-~nvi~TPHiag~t~e~-----~~~~~~~~~~nl~ 275 (380)
T 2o4c_A 208 RGAVVDNQALRRLL--EGGADLEVALDVWEGEPQ-ADPE-LA--A-RCLIATPHIAGYSLEG-----KLRGTAQIYQAYC 275 (380)
T ss_dssp CGGGBCHHHHHHHH--HTTCCEEEEESCCTTTTS-CCHH-HH--T-TCSEECSSCTTCCHHH-----HHHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHH--HhCCCceEEeeeeccCCC-Cchh-hc--c-CCEEEccccCcCCHHH-----HHHHHHHHHHHHH
Confidence 52211111112233 3555433311111 110 1111 11 1 4788888776322211 1345555666666
Q ss_pred hccCc
Q 008629 493 KQVTE 497 (559)
Q Consensus 493 ~~v~~ 497 (559)
.....
T Consensus 276 ~~l~g 280 (380)
T 2o4c_A 276 AWRGI 280 (380)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 66543
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=92.87 E-value=0.15 Score=51.42 Aligned_cols=104 Identities=19% Similarity=0.292 Sum_probs=65.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|++.+++..|.++++.+++|+|||.+|.+++..|.. .|. ++|+++++. .+|.+.|. ..|.
T Consensus 107 ~G~~~~L~~~~~~~~~k~vlvlGaGGaaraia~~L~~-----~G~------~~v~v~nRt----~~ka~~La---~~~~- 167 (282)
T 3fbt_A 107 IGFGKMLSKFRVEIKNNICVVLGSGGAARAVLQYLKD-----NFA------KDIYVVTRN----PEKTSEIY---GEFK- 167 (282)
T ss_dssp HHHHHHHHHTTCCCTTSEEEEECSSTTHHHHHHHHHH-----TTC------SEEEEEESC----HHHHHHHC---TTSE-
T ss_pred HHHHHHHHHcCCCccCCEEEEECCcHHHHHHHHHHHH-----cCC------CEEEEEeCC----HHHHHHHH---HhcC-
Confidence 7889999988999999999999999888888877765 365 679988874 22211111 1110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC---C----CCCHHHHHHHHcCCCCcEEEecC-CCC
Q 008629 364 EHEPVNNLLDAVKVIKPTILIGSSGVG---R----TFTKEVIEAMASFNEKPLILALS-NPT 417 (559)
Q Consensus 364 ~~~~~~~L~e~V~~vkPtvLIG~S~~~---g----~Ft~evv~~Ma~~~erPIIFaLS-NPt 417 (559)
..++.+.-+ +++|++|-++..| . .+..+.++ +..+||=+. ||.
T Consensus 168 ----~~~~~~l~~-l~~DivInaTp~Gm~~~~~~~pi~~~~l~------~~~~v~DlvY~P~ 218 (282)
T 3fbt_A 168 ----VISYDELSN-LKGDVIINCTPKGMYPKEGESPVDKEVVA------KFSSAVDLIYNPV 218 (282)
T ss_dssp ----EEEHHHHTT-CCCSEEEECSSTTSTTSTTCCSSCHHHHT------TCSEEEESCCSSS
T ss_pred ----cccHHHHHh-ccCCEEEECCccCccCCCccCCCCHHHcC------CCCEEEEEeeCCC
Confidence 012222222 3799999877553 1 13444442 456777664 664
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=92.78 E-value=0.23 Score=48.97 Aligned_cols=84 Identities=23% Similarity=0.363 Sum_probs=56.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|++.+++..|..++..+++|+|+|.+|..+|..|... |. +++++|+. .++ .......|-
T Consensus 114 ~G~~~~l~~~~~~~~~~~v~iiGaG~~g~aia~~L~~~-----g~-------~V~v~~r~----~~~---~~~l~~~~g- 173 (275)
T 2hk9_A 114 IGFLKSLKSLIPEVKEKSILVLGAGGASRAVIYALVKE-----GA-------KVFLWNRT----KEK---AIKLAQKFP- 173 (275)
T ss_dssp HHHHHHHHHHCTTGGGSEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEECSS----HHH---HHHHTTTSC-
T ss_pred HHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHHc-----CC-------EEEEEECC----HHH---HHHHHHHcC-
Confidence 48888888888899999999999999999998888653 52 68888874 111 111111110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 364 EHEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 364 ~~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
..-..++.++++. +|++|-+...+
T Consensus 174 -~~~~~~~~~~~~~--aDiVi~atp~~ 197 (275)
T 2hk9_A 174 -LEVVNSPEEVIDK--VQVIVNTTSVG 197 (275)
T ss_dssp -EEECSCGGGTGGG--CSEEEECSSTT
T ss_pred -CeeehhHHhhhcC--CCEEEEeCCCC
Confidence 0111267777764 99999776644
|
| >3u95_A Glycoside hydrolase, family 4; hydrolysis, cytosol; 2.00A {Thermotoga neapolitana} PDB: 1vjt_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.17 Score=54.62 Aligned_cols=44 Identities=23% Similarity=0.321 Sum_probs=30.2
Q ss_pred HHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCC
Q 008629 395 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGS 441 (559)
Q Consensus 395 ~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGS 441 (559)
.++++.|.++|+.-+++=.|||. +-+|- -+.++++=|+|=..-|
T Consensus 140 ~~i~~~i~~~~P~A~~in~tNP~--~i~t~-a~~~~~~~k~vGlC~~ 183 (477)
T 3u95_A 140 LEIAEKMKKMAPKAYLMQTANPV--FEITQ-AVRRWTGANIIGFCHG 183 (477)
T ss_dssp HHHHHHHHHHCTTCEEEECSSCH--HHHHH-HHHHHHCCCEEEECCG
T ss_pred HHHHHHHHhhCCCeEEEEecChH--HHHHH-HHHHhCCCCeEEECCC
Confidence 68999999999999999999998 44442 2234444444433333
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.18 Score=51.57 Aligned_cols=50 Identities=32% Similarity=0.403 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.|++.+++-.|..+++.+++|+|||.+|-+|+..|.. .|. ++|+++++.
T Consensus 138 ~~Gf~~~L~~~~~~l~gk~~lVlGaGG~g~aia~~L~~-----~Ga------~~V~i~nR~ 187 (315)
T 3tnl_A 138 GTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAAL-----DGV------KEISIFNRK 187 (315)
T ss_dssp HHHHHHHHHHTTCCCTTSEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS
T ss_pred HHHHHHHHHHcCCCccCCEEEEECCChHHHHHHHHHHH-----CCC------CEEEEEECC
Confidence 46788888888999999999999999777777766654 365 689999885
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.17 Score=51.65 Aligned_cols=90 Identities=26% Similarity=0.329 Sum_probs=56.9
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|++.+++-.|.++++.+++|+|||.+|-+|+..|.. .|. ++|+++++. ..|.++.......+..
T Consensus 133 ~Gf~~~L~~~~~~l~gk~~lVlGAGGaaraia~~L~~-----~G~------~~v~v~nRt----~~~~~~a~~la~~~~~ 197 (312)
T 3t4e_A 133 TGHIRAIKESGFDMRGKTMVLLGAGGAATAIGAQAAI-----EGI------KEIKLFNRK----DDFFEKAVAFAKRVNE 197 (312)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS----STHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcCCCEEEEECcCHHHHHHHHHHHH-----cCC------CEEEEEECC----CchHHHHHHHHHHhhh
Confidence 5778888888999999999999999888777777654 365 679988874 2211111111112211
Q ss_pred c------cCCCCCH---HHHhcccCCcEEEeccCCC
Q 008629 364 E------HEPVNNL---LDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 364 ~------~~~~~~L---~e~V~~vkPtvLIG~S~~~ 390 (559)
. ..+..++ .+.++. .|++|-++..|
T Consensus 198 ~~~~~v~~~~~~~l~~~~~~l~~--~DiIINaTp~G 231 (312)
T 3t4e_A 198 NTDCVVTVTDLADQHAFTEALAS--ADILTNGTKVG 231 (312)
T ss_dssp HSSCEEEEEETTCHHHHHHHHHH--CSEEEECSSTT
T ss_pred ccCcceEEechHhhhhhHhhccC--ceEEEECCcCC
Confidence 1 0112344 556664 89999877655
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.17 Score=50.89 Aligned_cols=50 Identities=22% Similarity=0.289 Sum_probs=40.2
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.|++.+++..|.++++.+++|+|||.+|-+++..|.. .|. ++|+++++.
T Consensus 110 ~~G~~~~L~~~~~~l~~k~vlvlGaGg~g~aia~~L~~-----~G~------~~v~v~~R~ 159 (281)
T 3o8q_A 110 GEGLVQDLLAQQVLLKGATILLIGAGGAARGVLKPLLD-----QQP------ASITVTNRT 159 (281)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHT-----TCC------SEEEEEESS
T ss_pred HHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHh-----cCC------CeEEEEECC
Confidence 46788888888999999999999999887777766654 365 579988874
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=92.55 E-value=0.16 Score=50.84 Aligned_cols=102 Identities=14% Similarity=0.185 Sum_probs=62.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch---hchhhcc-ccCC-CCCHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH---FKKPWAH-EHEP-VNNLLDA 374 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~---~k~~fA~-~~~~-~~~L~e~ 374 (559)
.||.|+|||+.|..+|..|... |+ ...++++|++- ++.+.+.. +-..+.. ...- ..++ ++
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~-----g~-----~~~V~l~d~~~----~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~ 66 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQ-----GV-----ADDYVFIDANE----AKVKADQIDFQDAMANLEAHGNIVINDW-AA 66 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSH----HHHHHHHHHHHHHGGGSSSCCEEEESCG-GG
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEcCCH----HHHHHHHHHHHhhhhhcCCCeEEEeCCH-HH
Confidence 3899999999999999888653 54 24799999851 11111110 0001110 0000 1356 66
Q ss_pred hcccCCcEEEeccCCC-------CCC-----------CHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 375 VKVIKPTILIGSSGVG-------RTF-----------TKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~-------g~F-----------t~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++. .|++|=+...+ |.. -+++++.|.++++..+|+-+|||-.
T Consensus 67 ~~~--aDvViiav~~~~~~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~ 126 (309)
T 1hyh_A 67 LAD--ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPVD 126 (309)
T ss_dssp GTT--CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSHH
T ss_pred hCC--CCEEEEecCCcccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCcHH
Confidence 764 89888554432 211 1588889988888888888999984
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=92.43 E-value=0.4 Score=48.56 Aligned_cols=101 Identities=24% Similarity=0.318 Sum_probs=65.5
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC---CCCHHHHhc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP---VNNLLDAVK 376 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~---~~~L~e~V~ 376 (559)
||+|+|| |..|..++..|+. .|+ ...++++|.+-. .....+|.+...+ . +... ..++.++++
T Consensus 2 KI~IiGa~G~VG~~la~~L~~-----~~~-----~~ev~L~Di~~~--~~~a~dL~~~~~~-~-~l~~~~~t~d~~~a~~ 67 (314)
T 1mld_A 2 KVAVLGASGGIGQPLSLLLKN-----SPL-----VSRLTLYDIAHT--PGVAADLSHIETR-A-TVKGYLGPEQLPDCLK 67 (314)
T ss_dssp EEEEETTTSTTHHHHHHHHHT-----CTT-----CSEEEEEESSSH--HHHHHHHTTSSSS-C-EEEEEESGGGHHHHHT
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CcEEEEEeCCcc--HHHHHHHhccCcC-c-eEEEecCCCCHHHHhC
Confidence 8999998 9999998877653 354 256999998741 1100012221100 0 0011 135888898
Q ss_pred ccCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
. .|++|=+.+.+. ...+++++.|.+++...+|+-.|||.
T Consensus 68 ~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~sNPv 120 (314)
T 1mld_A 68 G--CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV 120 (314)
T ss_dssp T--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred C--CCEEEECCCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCCc
Confidence 6 899885554442 24567888888899998888899998
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=92.39 E-value=0.17 Score=50.88 Aligned_cols=100 Identities=13% Similarity=0.302 Sum_probs=64.0
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC----CchhchhhccccCC---CCCHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS----LQHFKKPWAHEHEP---VNNLL 372 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~----l~~~k~~fA~~~~~---~~~L~ 372 (559)
.||.|+|||+.|.++|..+... |+ .+++++|.+- ++-+. +... ..+...... ..++
T Consensus 5 ~kI~VIGaG~~G~~ia~~la~~-----g~------~~V~l~D~~~----~~~~~~~~~l~~~-~~~~~~~~~i~~t~d~- 67 (317)
T 2ewd_A 5 RKIAVIGSGQIGGNIAYIVGKD-----NL------ADVVLFDIAE----GIPQGKALDITHS-MVMFGSTSKVIGTDDY- 67 (317)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSSS----SHHHHHHHHHHHH-HHHHTCCCCEEEESCG-
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------ceEEEEeCCc----hHHHHHHHHHHhh-hhhcCCCcEEEECCCH-
Confidence 5899999999999999998764 64 1499999852 21110 1100 011100111 1456
Q ss_pred HHhcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++++. +|++|=+.+.+.. +.+++++.+.++++.-||+-.|||..
T Consensus 68 ~a~~~--aDiVi~avg~p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~ 125 (317)
T 2ewd_A 68 ADISG--SDVVIITASIPGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLD 125 (317)
T ss_dssp GGGTT--CSEEEECCCCSSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH
T ss_pred HHhCC--CCEEEEeCCCCCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHH
Confidence 67764 8988866544421 24677888888888899999999973
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.47 Score=51.72 Aligned_cols=175 Identities=19% Similarity=0.242 Sum_probs=112.2
Q ss_pred chhHhHHHHHHHHHH--hhCCCeeeeeccCCCCcHH--HHHHHHcCCC---------CeeecCC---------cchhHHH
Q 008629 225 EYAELLDEFMSAVKQ--NYGEKVLIQFEDFANHNAF--ELLAKYGTTH---------LVFNDDI---------QGTASVV 282 (559)
Q Consensus 225 ~y~~~vdefv~av~~--~fGp~~lIq~EDf~~~~Af--~lL~ryr~~~---------~~FnDDi---------QGTaaV~ 282 (559)
|-..+.-.||..+.+ ..||..-|-=+|++..-.. -+.+.|+... |+-..-+ .-||-=+
T Consensus 140 El~r~~r~f~~eL~~~~~IGp~~dipApDvGt~~~eM~wm~d~y~~~~g~~~~~~~g~vTGKp~~~GGs~~r~eATg~GV 219 (501)
T 3mw9_A 140 ELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGV 219 (501)
T ss_dssp HHHHHHHHHHHHHHHTTSCBTTTEECCBCTTCCHHHHHHHHHHHHHTTTTTCTTGGGSCSSCCGGGTCCTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCeeEecCCCCCCHHHHHHHHHHHHHHhCCCcccCCceeeCCcccccCCCCCCCchHHHH
Confidence 556777889998875 6789988999999875321 2677875211 1111111 1233333
Q ss_pred HHHHHH------HHHHhCC--CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 283 LAGVVA------ALKLIGG--TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 283 LAgll~------Alr~~g~--~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
.-++-+ +++..|. .|++.||+|-|.|..|...|+.|.+. |. +-+-+.|++|-|++.. .+
T Consensus 220 ~~~~~~~l~~~~~~~~~G~~~~l~g~tVaVQG~GNVG~~aa~~L~e~-----Ga------kVVavsDs~G~iyd~~--Gi 286 (501)
T 3mw9_A 220 FHGIENFINEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRF-----GA------KCITVGESDGSIWNPD--GI 286 (501)
T ss_dssp HHHHHHHHTCHHHHHHTTCCSSSTTCEEEEECCSHHHHHHHHHHHHT-----TC------EEEEEECSSCEEECTT--CC
T ss_pred HHHHHHHHhhhHHHHHcCCCCCcCCCEEEEECCCHHHHHHHHHHHHC-----CC------EEEEEEcCCceEECCC--CC
Confidence 333332 3446675 58999999999999999999998763 63 4566899999999764 34
Q ss_pred ch-----hchhhccc--cCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CC
Q 008629 355 QH-----FKKPWAHE--HEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PT 417 (559)
Q Consensus 355 ~~-----~k~~fA~~--~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt 417 (559)
+. ++.....- -+....+.+.+-.++.||||=+..+ +.+|++-++.+ .-.||.--+| |+
T Consensus 287 d~~~l~~~k~~~g~i~~~~~a~~~~~~il~~~~DIliPcA~~-n~I~~~na~~l----~akiV~EgAN~p~ 352 (501)
T 3mw9_A 287 DPKELEDFKLQHGTILGFPKAKIYEGSILEVDCDILIPAASE-KQLTKSNAPRV----KAKIIAEGANGPT 352 (501)
T ss_dssp CHHHHHHHHHHHSSSTTCTTSEEECSCGGGSCCSEEEECSSS-CCBCTTTGGGC----CCSEEECCSSSCB
T ss_pred CHHHHHHHHHhcCCeecccCceeeccccccccceEEeecccc-CccCHhHHHHc----CceEEEeCCCCcC
Confidence 33 22221100 0000001112445689999988875 79999988877 4689999998 54
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.22 Score=50.89 Aligned_cols=101 Identities=19% Similarity=0.326 Sum_probs=66.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhccccCCC---CCHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEPV---NNLL 372 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~~~~---~~L~ 372 (559)
.||.|+|||+.|.++|.++... |+ -+++|+|.+- ++-+ .+.+.. .+......+ .++.
T Consensus 10 ~kI~VIGaG~vG~~lA~~la~~-----g~------~~V~L~D~~~----~~~~~~~~~l~~~~-~~~~~~~~i~~t~d~~ 73 (331)
T 1pzg_A 10 KKVAMIGSGMIGGTMGYLCALR-----EL------ADVVLYDVVK----GMPEGKALDLSHVT-SVVDTNVSVRAEYSYE 73 (331)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSSS----SHHHHHHHHHHHHH-HHTTCCCCEEEECSHH
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC------CeEEEEECCh----hHHHHHHHHHHhhh-hccCCCCEEEEeCCHH
Confidence 5899999999999999988763 54 1399999862 2111 011111 111111111 5788
Q ss_pred HHhcccCCcEEEeccCCC---CC----------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVG---RT----------------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~---g~----------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++++. .|++|=+.+.+ |. .-+++.+.|.++++.-+|+=-|||..
T Consensus 74 ea~~~--aDiVi~a~g~p~~~g~~~~~~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNP~~ 136 (331)
T 1pzg_A 74 AALTG--ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPLD 136 (331)
T ss_dssp HHHTT--CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHH
T ss_pred HHhCC--CCEEEEccCCCCCCCcccCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEEcCchH
Confidence 88886 89988665433 32 14678888999998888888899984
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.14 E-value=0.18 Score=50.42 Aligned_cols=100 Identities=19% Similarity=0.231 Sum_probs=60.1
Q ss_pred hHHHHHHHHHH-hhCCCeeeeeccCCCCcHHHHHHHHcC--------CCCeeecC-CcchhHHHHHHHHHH-HHHhCCCc
Q 008629 229 LLDEFMSAVKQ-NYGEKVLIQFEDFANHNAFELLAKYGT--------THLVFNDD-IQGTASVVLAGVVAA-LKLIGGTL 297 (559)
Q Consensus 229 ~vdefv~av~~-~fGp~~lIq~EDf~~~~Af~lL~ryr~--------~~~~FnDD-iQGTaaV~LAgll~A-lr~~g~~l 297 (559)
.+.++++.++. .|+. ++.--=-...++++||+... +..++.|+ ..|.-.= -.|++.+ ++..|.++
T Consensus 43 ~l~~~~~~~~~~~~~G---~nVTiP~K~~v~~~~d~l~~~A~~iGAvNTv~~~~g~l~G~NTD-~~G~~~~lL~~~~~~l 118 (272)
T 3pwz_A 43 DFEAQVLQFRSEGGKG---MNITAPFKLRAFELADRRSERAQLARAANALKFEDGRIVAENFD-GIGLLRDIEENLGEPL 118 (272)
T ss_dssp THHHHHHHHHHTTCCE---EEECTTCHHHHHHHCSEECHHHHHHTCCSEEEEETTEEEEECCH-HHHHHHHHHTTSCCCC
T ss_pred HHHHHHHHHhhCCCCE---EEECchhHHHHHHHHhhCCHHHHHhCccceEEccCCeEEEecCC-HHHHHHHHHHHcCCCc
Confidence 35566666653 3432 33222122345666655421 11133333 3453332 4578888 88788899
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++.+++|+|||.+|-+++..|.+ .|. ++|+++++.
T Consensus 119 ~~k~~lvlGaGg~~~aia~~L~~-----~G~------~~v~i~~R~ 153 (272)
T 3pwz_A 119 RNRRVLLLGAGGAVRGALLPFLQ-----AGP------SELVIANRD 153 (272)
T ss_dssp TTSEEEEECCSHHHHHHHHHHHH-----TCC------SEEEEECSC
T ss_pred cCCEEEEECccHHHHHHHHHHHH-----cCC------CEEEEEeCC
Confidence 99999999999777777766654 365 578888774
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=91.99 E-value=0.22 Score=51.25 Aligned_cols=96 Identities=19% Similarity=0.293 Sum_probs=63.3
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc----CCCCCHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLL 372 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~----~~~~~L~ 372 (559)
++..+++|+|||.+|.+++..+.. .| | +++++|+. .+| +...+..++... ....++.
T Consensus 165 l~~~~VlViGaGgvG~~aa~~a~~-----~G-----a--~V~v~dr~----~~r---~~~~~~~~~~~~~~~~~~~~~~~ 225 (361)
T 1pjc_A 165 VKPGKVVILGGGVVGTEAAKMAVG-----LG-----A--QVQIFDIN----VER---LSYLETLFGSRVELLYSNSAEIE 225 (361)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHH-----TT-----C--EEEEEESC----HHH---HHHHHHHHGGGSEEEECCHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHh-----CC-----C--EEEEEeCC----HHH---HHHHHHhhCceeEeeeCCHHHHH
Confidence 667899999999999999888764 36 2 68888874 222 222222333210 0112466
Q ss_pred HHhcccCCcEEEeccCCCCC-----CCHHHHHHHHcCCCCcEEEecCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRT-----FTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~-----Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
+.++ +.|++|.+++.++. ++++.++.|. +.-+|+-++.+
T Consensus 226 ~~~~--~~DvVI~~~~~~~~~~~~li~~~~~~~~~---~g~~ivdv~~~ 269 (361)
T 1pjc_A 226 TAVA--EADLLIGAVLVPGRRAPILVPASLVEQMR---TGSVIVDVAVD 269 (361)
T ss_dssp HHHH--TCSEEEECCCCTTSSCCCCBCHHHHTTSC---TTCEEEETTCT
T ss_pred HHHc--CCCEEEECCCcCCCCCCeecCHHHHhhCC---CCCEEEEEecC
Confidence 7776 48999999876652 5888888885 45677777754
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=91.97 E-value=0.6 Score=49.66 Aligned_cols=112 Identities=21% Similarity=0.250 Sum_probs=76.8
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHH---HHHHHc---CCC-C---eeecC----------CcchhHHHHH
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE---LLAKYG---TTH-L---VFNDD----------IQGTASVVLA 284 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~---lL~ryr---~~~-~---~FnDD----------iQGTaaV~LA 284 (559)
+-..+...|+.++.+.-||+.-|-=+|++.. ... +.+.|. ... + ++--+ -.-||-=+.-
T Consensus 118 e~~~~~r~f~~~l~~~~g~~~dv~a~D~gt~-~~~m~~~~~~y~~~~~~~~~~~~~~tGk~~~~GGs~~~~~aTg~Gv~~ 196 (419)
T 1gtm_A 118 EKERLARGYIRAIYDVISPYEDIPAPDVYTN-PQIMAWMMDEYETISRRKTPAFGIITGKPLSIGGSLGRIEATARGASY 196 (419)
T ss_dssp HHHHHHHHHHHHHGGGCBTTTEECCBCTTCC-HHHHHHHHHHHHHHHTTSSCGGGGCSSCCGGGTCCTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCcEEeCCCCCCC-HHHHHHHHHHHHHhhCCCCCccceEecCcchhCCCCCCCcchhhHHHH
Confidence 4456788899999988889888989999874 222 345553 221 2 33222 1235555555
Q ss_pred HHHHHHHHhCCC-cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccc
Q 008629 285 GVVAALKLIGGT-LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV 347 (559)
Q Consensus 285 gll~Alr~~g~~-l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~ 347 (559)
++-.+++..|.. |++.++.|+|.|..|..+|+++... .|+ +-+.+-|+.|-++
T Consensus 197 ~~~~~~~~~G~~~l~gktvgI~G~G~VG~~vA~~l~~~----~G~------kVv~~sD~~g~~~ 250 (419)
T 1gtm_A 197 TIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSED----FGM------KVVAVSDSKGGIY 250 (419)
T ss_dssp HHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHT----TCC------EEEEEECSSCEEE
T ss_pred HHHHHHHHhCCcccCCCEEEEEcCCHHHHHHHHHHHHh----cCC------EEEEEeCCCcccc
Confidence 677788889999 9999999999999999999988651 264 3333448876544
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=91.79 E-value=1.1 Score=47.28 Aligned_cols=120 Identities=10% Similarity=0.093 Sum_probs=85.9
Q ss_pred CCCCeeecCC---cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 266 TTHLVFNDDI---QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 266 ~~~~~FnDDi---QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
..+.+.|.-- +.+|=-+++.+|+..|..|..|.+.++.|+|.|..|-.+|+.+... |+ +++.+|+
T Consensus 83 ~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g~~l~gktvGIIGlG~IG~~vA~~l~a~-----G~-------~V~~~d~ 150 (381)
T 3oet_A 83 AGIGFSAAPGCNAIAVVEYVFSALLMLAERDGFSLRDRTIGIVGVGNVGSRLQTRLEAL-----GI-------RTLLCDP 150 (381)
T ss_dssp TTCEEECCTTTTHHHHHHHHHHHHHHHHHHTTCCGGGCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECH
T ss_pred CCEEEEECCCcCcchhHHHHHHHHHHHHHhcCCccCCCEEEEEeECHHHHHHHHHHHHC-----CC-------EEEEECC
Confidence 3455555432 2445568899999999999999999999999999999999998753 65 5788886
Q ss_pred cCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC--------CCCCCCHHHHHHHHcCCCCcEEEecC
Q 008629 343 KGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG--------VGRTFTKEVIEAMASFNEKPLILALS 414 (559)
Q Consensus 343 ~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~--------~~g~Ft~evv~~Ma~~~erPIIFaLS 414 (559)
.. . . .. ......+|.|+++. .|+++=.-- .-+.|+++.++.|. +..|+.=.|
T Consensus 151 ~~----~--~-~~--------~~~~~~sl~ell~~--aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk---~gailIN~a 210 (381)
T 3oet_A 151 PR----A--A-RG--------DEGDFRTLDELVQE--ADVLTFHTPLYKDGPYKTLHLADETLIRRLK---PGAILINAC 210 (381)
T ss_dssp HH----H--H-TT--------CCSCBCCHHHHHHH--CSEEEECCCCCCSSTTCCTTSBCHHHHHHSC---TTEEEEECS
T ss_pred Ch----H--H-hc--------cCcccCCHHHHHhh--CCEEEEcCcCCccccccchhhcCHHHHhcCC---CCcEEEECC
Confidence 31 0 0 00 11123579999986 898874431 34689999999996 677888777
Q ss_pred CCC
Q 008629 415 NPT 417 (559)
Q Consensus 415 NPt 417 (559)
.-.
T Consensus 211 RG~ 213 (381)
T 3oet_A 211 RGP 213 (381)
T ss_dssp CGG
T ss_pred CCc
Confidence 633
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.25 Score=50.89 Aligned_cols=97 Identities=23% Similarity=0.341 Sum_probs=60.4
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----ccCCCCCH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNL 371 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~----~~~~~~~L 371 (559)
.+...+++|+|+|..|..+|+.+.. .|. +++++|++- ++ +...+..+.. +.....++
T Consensus 163 ~l~~~~V~ViGaG~iG~~~a~~l~~-----~Ga-------~V~~~d~~~----~~---~~~~~~~~g~~~~~~~~~~~~l 223 (369)
T 2eez_A 163 GVAPASVVILGGGTVGTNAAKIALG-----MGA-------QVTILDVNH----KR---LQYLDDVFGGRVITLTATEANI 223 (369)
T ss_dssp BBCCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESCH----HH---HHHHHHHTTTSEEEEECCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEECCH----HH---HHHHHHhcCceEEEecCCHHHH
Confidence 3778999999999999999888764 363 588888741 11 2111111111 00112357
Q ss_pred HHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
.++++. .|++|.+.+.++ .++++.++.|. +.-+|.-+|.+
T Consensus 224 ~~~~~~--~DvVi~~~g~~~~~~~~li~~~~l~~mk---~gg~iV~v~~~ 268 (369)
T 2eez_A 224 KKSVQH--ADLLIGAVLVPGAKAPKLVTRDMLSLMK---EGAVIVDVAVD 268 (369)
T ss_dssp HHHHHH--CSEEEECCC-------CCSCHHHHTTSC---TTCEEEECC--
T ss_pred HHHHhC--CCEEEECCCCCccccchhHHHHHHHhhc---CCCEEEEEecC
Confidence 788874 899999887553 46899999885 34566666644
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.76 E-value=0.16 Score=54.51 Aligned_cols=106 Identities=16% Similarity=0.293 Sum_probs=66.9
Q ss_pred cccceEEEeCcChH--HHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc---ccCCCCCH
Q 008629 297 LAEHRFLFLGAGEA--GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEPVNNL 371 (559)
Q Consensus 297 l~d~riv~~GAGsA--giGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---~~~~~~~L 371 (559)
++..||.|+|||+. |.|++..|+.. ..+ . ..++|+|.+- +|-+.+....+.+.+ .-.-..++
T Consensus 3 m~~~KIaVIGaGs~g~g~~la~~l~~~----~~~----~-geV~L~Di~~----e~le~~~~~~~~l~~~~~~I~~TtD~ 69 (450)
T 3fef_A 3 LDQIKIAYIGGGSQGWARSLMSDLSID----ERM----S-GTVALYDLDF----EAAQKNEVIGNHSGNGRWRYEAVSTL 69 (450)
T ss_dssp CCCEEEEEETTTCSSHHHHHHHHHHHC----SSC----C-EEEEEECSSH----HHHHHHHHHHTTSTTSCEEEEEESSH
T ss_pred CCCCEEEEECCChhHhHHHHHHHHHhc----ccc----C-CeEEEEeCCH----HHHHHHHHHHHHHhccCCeEEEECCH
Confidence 35679999999995 68999888752 222 2 3899999751 110000000001111 00112579
Q ss_pred HHHhcccCCcEEEeccCCC---------------CCC---------------------CHHHHHHHHcCCCCcEEEecCC
Q 008629 372 LDAVKVIKPTILIGSSGVG---------------RTF---------------------TKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~---------------g~F---------------------t~evv~~Ma~~~erPIIFaLSN 415 (559)
.||++. +|.+|=.-.+| |.. -.++++.|.++|+.-+++-.||
T Consensus 70 ~eAl~d--ADfVI~airvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tN 147 (450)
T 3fef_A 70 KKALSA--ADIVIISILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTN 147 (450)
T ss_dssp HHHHTT--CSEEEECCCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCS
T ss_pred HHHhcC--CCEEEeccccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 999986 89888544332 221 3577788889999999999999
Q ss_pred CC
Q 008629 416 PT 417 (559)
Q Consensus 416 Pt 417 (559)
|.
T Consensus 148 Pv 149 (450)
T 3fef_A 148 PM 149 (450)
T ss_dssp SH
T ss_pred ch
Confidence 98
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=91.35 E-value=0.39 Score=46.32 Aligned_cols=109 Identities=15% Similarity=0.211 Sum_probs=61.4
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc--ccCCcCCCc-hhchhhcccc--CC
Q 008629 293 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI--VSSRKDSLQ-HFKKPWAHEH--EP 367 (559)
Q Consensus 293 ~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi--~~~R~~~l~-~~k~~fA~~~--~~ 367 (559)
...++...||.|+|+|..|.++|..|... | .+++++|++-=- .+...+.+. .....++... ..
T Consensus 13 ~~~~~~~~kIgiIG~G~mG~alA~~L~~~-----G-------~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (245)
T 3dtt_A 13 ENLYFQGMKIAVLGTGTVGRTMAGALADL-----G-------HEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVH 80 (245)
T ss_dssp ------CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCE
T ss_pred cccccCCCeEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCcee
Confidence 45678889999999999999999998763 5 368888875211 000000000 0011222211 11
Q ss_pred CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEecCCCC
Q 008629 368 VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSNPT 417 (559)
Q Consensus 368 ~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSNPt 417 (559)
..++.|+++. +|++| ++..+. ...++++.+ +..-+..+|.-+|||.
T Consensus 81 ~~~~~e~~~~--aDvVi-lavp~~-~~~~~~~~i~~~~l~g~ivi~~s~~~ 127 (245)
T 3dtt_A 81 LAAFADVAAG--AELVV-NATEGA-SSIAALTAAGAENLAGKILVDIANPL 127 (245)
T ss_dssp EEEHHHHHHH--CSEEE-ECSCGG-GHHHHHHHHCHHHHTTSEEEECCCCE
T ss_pred ccCHHHHHhc--CCEEE-EccCcH-HHHHHHHHhhhhhcCCCEEEECCCCC
Confidence 2578999986 88887 444332 345666666 3333667999999974
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=91.25 E-value=1.7 Score=43.99 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=81.0
Q ss_pred CCCCeeecCCc---chhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhc
Q 008629 266 TTHLVFNDDIQ---GTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQT 326 (559)
Q Consensus 266 ~~~~~FnDDiQ---GTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~ 326 (559)
..+.+.|---- .+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|..+|+.+...
T Consensus 90 ~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~----- 164 (313)
T 2ekl_A 90 RNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKTIGIVGFGRIGTKVGIIANAM----- 164 (313)
T ss_dssp TTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCEEEEESCSHHHHHHHHHHHHT-----
T ss_pred CCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCEEEEEeeCHHHHHHHHHHHHC-----
Confidence 45666664332 2344478888888775 35689999999999999999999988652
Q ss_pred CCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHH
Q 008629 327 KAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMA 402 (559)
Q Consensus 327 G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma 402 (559)
|+ +++.+|+.. +. . ..+ .+ .-...+|.|+++. .|+++=.-- ..++++++.++.|.
T Consensus 165 G~-------~V~~~d~~~----~~---~-~~~-~~---g~~~~~l~ell~~--aDvVvl~~P~~~~t~~li~~~~l~~mk 223 (313)
T 2ekl_A 165 GM-------KVLAYDILD----IR---E-KAE-KI---NAKAVSLEELLKN--SDVISLHVTVSKDAKPIIDYPQFELMK 223 (313)
T ss_dssp TC-------EEEEECSSC----CH---H-HHH-HT---TCEECCHHHHHHH--CSEEEECCCCCTTSCCSBCHHHHHHSC
T ss_pred CC-------EEEEECCCc----ch---h-HHH-hc---CceecCHHHHHhh--CCEEEEeccCChHHHHhhCHHHHhcCC
Confidence 64 588887641 10 0 011 11 0011378998885 898885532 34678899998886
Q ss_pred cCCCCcEEEecCC
Q 008629 403 SFNEKPLILALSN 415 (559)
Q Consensus 403 ~~~erPIIFaLSN 415 (559)
+..++.=.|.
T Consensus 224 ---~ga~lIn~ar 233 (313)
T 2ekl_A 224 ---DNVIIVNTSR 233 (313)
T ss_dssp ---TTEEEEESSC
T ss_pred ---CCCEEEECCC
Confidence 5678887777
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=0.31 Score=47.46 Aligned_cols=81 Identities=25% Similarity=0.343 Sum_probs=54.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|++.+++..|.++++ +++|+|+|.+|..+|..+.. .|. +++++|++ .++ .......|..
T Consensus 102 ~g~~~~l~~~~~~l~~-~v~iiG~G~~g~~~a~~l~~-----~g~-------~v~v~~r~----~~~---~~~l~~~~~~ 161 (263)
T 2d5c_A 102 PGFLEALKAGGIPLKG-PALVLGAGGAGRAVAFALRE-----AGL-------EVWVWNRT----PQR---ALALAEEFGL 161 (263)
T ss_dssp HHHHHHHHHTTCCCCS-CEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS----HHH---HHHHHHHHTC
T ss_pred HHHHHHHHHhCCCCCC-eEEEECCcHHHHHHHHHHHH-----CCC-------EEEEEECC----HHH---HHHHHHHhcc
Confidence 5888889888889999 99999999999999887764 252 58888874 111 1111112211
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 364 EHEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 364 ~~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
. ..++.++ + ++|++|-+...+
T Consensus 162 ~---~~~~~~~-~--~~Divi~~tp~~ 182 (263)
T 2d5c_A 162 R---AVPLEKA-R--EARLLVNATRVG 182 (263)
T ss_dssp E---ECCGGGG-G--GCSEEEECSSTT
T ss_pred c---hhhHhhc-c--CCCEEEEccCCC
Confidence 1 2467676 5 499999776644
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=91.06 E-value=0.78 Score=46.63 Aligned_cols=101 Identities=14% Similarity=0.175 Sum_probs=66.4
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc----ccCCCCCHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH----EHEPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~----~~~~~~~L~e 373 (559)
...+++|+|+|..|-.+++.+... .++ ++|+++|+. +. ..+...+.. +.... ++.|
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~----~~~------~~V~v~~r~------~a---~~la~~l~~~~g~~~~~~-~~~e 179 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSAR----FAL------EAILVHDPY------AS---PEILERIGRRCGVPARMA-APAD 179 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHH----SCC------CEEEEECTT------CC---HHHHHHHHHHHTSCEEEC-CHHH
T ss_pred CCcEEEEECccHHHHHHHHHHHHh----CCC------cEEEEECCc------HH---HHHHHHHHHhcCCeEEEe-CHHH
Confidence 457999999999998888776653 233 689999986 21 222222221 11123 8999
Q ss_pred HhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecCC--CCCCCCCCHHHH
Q 008629 374 AVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALSN--PTSQSECTAEEA 427 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLSN--Pt~~~EctpedA 427 (559)
+++. .|++|-++..+ .+|..+++ .+..+|..++. |. +-|+.++-.
T Consensus 180 av~~--aDIVi~aT~s~~pvl~~~~l------~~G~~V~~vGs~~p~-~~El~~~~~ 227 (313)
T 3hdj_A 180 IAAQ--ADIVVTATRSTTPLFAGQAL------RAGAFVGAIGSSLPH-TRELDDEAL 227 (313)
T ss_dssp HHHH--CSEEEECCCCSSCSSCGGGC------CTTCEEEECCCSSTT-CCCCCHHHH
T ss_pred HHhh--CCEEEEccCCCCcccCHHHc------CCCcEEEECCCCCCc-hhhcCHHHH
Confidence 9986 99999776433 35555443 36778888876 44 588888754
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.33 Score=50.12 Aligned_cols=114 Identities=16% Similarity=0.163 Sum_probs=68.7
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
+|.+++.... +....++.|+|+|..|-.++..+... .+. ++++++|+. .++ ...+...|..
T Consensus 116 ~s~laa~~la--~~~~~~v~iIGaG~~a~~~a~al~~~----~~~------~~V~V~~r~----~~~---a~~la~~~~~ 176 (350)
T 1x7d_A 116 TSLMAAQALA--RPNARKMALIGNGAQSEFQALAFHKH----LGI------EEIVAYDTD----PLA---TAKLIANLKE 176 (350)
T ss_dssp HHHHHHHHHS--CTTCCEEEEECCSTTHHHHHHHHHHH----SCC------CEEEEECSS----HHH---HHHHHHHHTT
T ss_pred HHHHHHHHhc--cccCCeEEEECCcHHHHHHHHHHHHh----CCC------cEEEEEcCC----HHH---HHHHHHHHHh
Confidence 4556665553 34568999999999999988776543 243 678888874 222 2233333321
Q ss_pred c----cCCCCCHHHHhcccCCcEEEeccCCC---CCCCHHHHHHHHcCCCCcEEEecCC--CCCCCCCCHH
Q 008629 364 E----HEPVNNLLDAVKVIKPTILIGSSGVG---RTFTKEVIEAMASFNEKPLILALSN--PTSQSECTAE 425 (559)
Q Consensus 364 ~----~~~~~~L~e~V~~vkPtvLIG~S~~~---g~Ft~evv~~Ma~~~erPIIFaLSN--Pt~~~Ectpe 425 (559)
. .....++.|+++. .|++|=++..+ ..|..+.++ +.-.|+.++. |. +-|+.++
T Consensus 177 ~~g~~~~~~~~~~eav~~--aDiVi~aTps~~~~pvl~~~~l~------~G~~V~~vgs~~p~-~~El~~~ 238 (350)
T 1x7d_A 177 YSGLTIRRASSVAEAVKG--VDIITTVTADKAYATIITPDMLE------PGMHLNAVGGDCPG-KTELHAD 238 (350)
T ss_dssp CTTCEEEECSSHHHHHTT--CSEEEECCCCSSEEEEECGGGCC------TTCEEEECSCCBTT-BEEECHH
T ss_pred ccCceEEEeCCHHHHHhc--CCEEEEeccCCCCCceecHHHcC------CCCEEEECCCCCCC-ceeeCHH
Confidence 0 1123689999985 89998766543 134433322 3447777775 55 5777664
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=90.92 E-value=0.29 Score=52.97 Aligned_cols=124 Identities=15% Similarity=0.134 Sum_probs=73.5
Q ss_pred cceEEEeCcChHH--HHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc---ccCC---CCC
Q 008629 299 EHRFLFLGAGEAG--TGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH---EHEP---VNN 370 (559)
Q Consensus 299 d~riv~~GAGsAg--iGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~---~~~~---~~~ 370 (559)
..||.|+|||+.| .++|..|+.. .++ +-..++|+|.+- ++-+........+.. .... ..+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~----~~l----~~~eV~L~Di~~----e~l~~~~~~~~~~l~~~~~~~~I~~ttD 70 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKT----PGL----SGSTVTLMDIDE----ERLDAILTIAKKYVEEVGADLKFEKTMN 70 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTC----GGG----TTCEEEEECSCH----HHHHHHHHHHHHHHHHTTCCCEEEEESC
T ss_pred CCEEEEECCCchHHHHHHHHHHHhc----CcC----CCCEEEEEeCCH----HHHHHHHHHHHHHhccCCCCcEEEEECC
Confidence 4589999999965 4446666531 122 136799999852 211111111111111 0111 247
Q ss_pred HHHHhcccCCcEEEeccCC---------------CCCCC-------------------------HHHHHHHHcCCCCcEE
Q 008629 371 LLDAVKVIKPTILIGSSGV---------------GRTFT-------------------------KEVIEAMASFNEKPLI 410 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~---------------~g~Ft-------------------------~evv~~Ma~~~erPII 410 (559)
+.++++. .|++|=+.+. .|.|. +++++.|.++|+.-+|
T Consensus 71 ~~eal~d--AD~VIiaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~i 148 (480)
T 1obb_A 71 LDDVIID--ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWY 148 (480)
T ss_dssp HHHHHTT--CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEE
T ss_pred HHHHhCC--CCEEEECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEE
Confidence 8889986 8988855532 13333 6899999999999999
Q ss_pred EecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 008629 411 LALSNPTSQSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 411 FaLSNPt~~~EctpedA~~wt~G~aifAsG 440 (559)
+-.|||. . +..+-+.++..- -+|.+|
T Consensus 149 i~~TNPv--d-i~t~~~~k~p~~-rviG~c 174 (480)
T 1obb_A 149 LQAANPI--F-EGTTLVTRTVPI-KAVGFC 174 (480)
T ss_dssp EECSSCH--H-HHHHHHHHHSCS-EEEEEC
T ss_pred EEeCCcH--H-HHHHHHHHCCCC-cEEecC
Confidence 9999998 2 233334444443 455554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=90.88 E-value=0.087 Score=53.01 Aligned_cols=123 Identities=18% Similarity=0.302 Sum_probs=67.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCC-CCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEP-VNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~-~~~L~e~V~~vk 379 (559)
||.|+|||+.|.++|..+.. .|. ...++++|.+---......++.+.. +|.....- ..+ .++++.
T Consensus 2 kI~VIGaG~vG~~la~~la~-----~g~-----~~eV~L~D~~~~~~~~~~~~l~~~~-~~~~~~~i~~~~-~~a~~~-- 67 (304)
T 2v6b_A 2 KVGVVGTGFVGSTAAFALVL-----RGS-----CSELVLVDRDEDRAQAEAEDIAHAA-PVSHGTRVWHGG-HSELAD-- 67 (304)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSHHHHHHHHHHHTTSC-CTTSCCEEEEEC-GGGGTT--
T ss_pred EEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCCHHHHHHHHHhhhhhh-hhcCCeEEEECC-HHHhCC--
Confidence 89999999999999977754 354 1479999985210000000011111 11111000 023 356664
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeC
Q 008629 380 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 380 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsG 440 (559)
.|++|=+.+.+.. .-+++++.|+++++.-+|+-.|||.. .....+.+.+.-.-+|.+|
T Consensus 68 aDvVIi~~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP~~---~~~~~~~~~~~~~rviG~g 139 (304)
T 2v6b_A 68 AQVVILTAGANQKPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNPVD---LLTDLATQLAPGQPVIGSG 139 (304)
T ss_dssp CSEEEECC------------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSSHH---HHHHHHHHHSCSSCEEECT
T ss_pred CCEEEEcCCCCCCCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCchH---HHHHHHHHhCChhcEEeCC
Confidence 8988866544421 12788888988888888877999983 2233344443333455554
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.41 Score=42.56 Aligned_cols=102 Identities=13% Similarity=0.140 Sum_probs=53.0
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc-hhchhhcc-ccCCCCCHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-HFKKPWAH-EHEPVNNLL 372 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~-~~k~~fA~-~~~~~~~L~ 372 (559)
+.+...+|+|+|+|..|..+|+.+.. .| .+++++|++ ..+.+.+. .....+.. +......|.
T Consensus 15 ~~~~~~~v~IiG~G~iG~~la~~L~~-----~g-------~~V~vid~~----~~~~~~~~~~~g~~~~~~d~~~~~~l~ 78 (155)
T 2g1u_A 15 KKQKSKYIVIFGCGRLGSLIANLASS-----SG-------HSVVVVDKN----EYAFHRLNSEFSGFTVVGDAAEFETLK 78 (155)
T ss_dssp --CCCCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESC----GGGGGGSCTTCCSEEEESCTTSHHHHH
T ss_pred cccCCCcEEEECCCHHHHHHHHHHHh-----CC-------CeEEEEECC----HHHHHHHHhcCCCcEEEecCCCHHHHH
Confidence 34566799999999999999988865 25 368888875 12211121 11111111 111111233
Q ss_pred HH-hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 373 DA-VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 373 e~-V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
++ ++ ++|++|-+.... ..+..+++.+...+....|++.+|
T Consensus 79 ~~~~~--~ad~Vi~~~~~~-~~~~~~~~~~~~~~~~~~iv~~~~ 119 (155)
T 2g1u_A 79 ECGME--KADMVFAFTNDD-STNFFISMNARYMFNVENVIARVY 119 (155)
T ss_dssp TTTGG--GCSEEEECSSCH-HHHHHHHHHHHHTSCCSEEEEECS
T ss_pred HcCcc--cCCEEEEEeCCc-HHHHHHHHHHHHHCCCCeEEEEEC
Confidence 33 33 489998776643 233444444333344455555544
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=90.67 E-value=0.31 Score=49.02 Aligned_cols=103 Identities=17% Similarity=0.264 Sum_probs=63.5
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc--cCccccCCcCCCchhchhhccccCC-CCCHHHHhc
Q 008629 301 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KGLIVSSRKDSLQHFKKPWAHEHEP-VNNLLDAVK 376 (559)
Q Consensus 301 riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~--~GLi~~~R~~~l~~~k~~fA~~~~~-~~~L~e~V~ 376 (559)
||+|.| +|..|..++..|+. .|+ ...++|+|. +-=-.+.-..+|.+... +..+..- ..+ .++++
T Consensus 2 KI~IiGAaG~vG~~l~~~L~~-----~~~-----~~el~L~Di~~~~~~~~~~~~dl~~~~~-~~~~~~v~~~~-~~a~~ 69 (303)
T 1o6z_A 2 KVSVVGAAGTVGAAAGYNIAL-----RDI-----ADEVVFVDIPDKEDDTVGQAADTNHGIA-YDSNTRVRQGG-YEDTA 69 (303)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TTC-----CSEEEEECCGGGHHHHHHHHHHHHHHHT-TTCCCEEEECC-GGGGT
T ss_pred EEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEcCCCChhhHHHHHHHHHHHHh-hCCCcEEEeCC-HHHhC
Confidence 899999 99999998887754 254 246999997 31000000001222111 1111000 022 56676
Q ss_pred ccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
. .|++|=+.+.+ |. .+++++++|.+++.+.+|+--|||.
T Consensus 70 ~--aDvVi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~SNPv 122 (303)
T 1o6z_A 70 G--SDVVVITAGIPRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV 122 (303)
T ss_dssp T--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSH
T ss_pred C--CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeCChH
Confidence 5 89988666654 32 4677889999999999999999998
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=90.65 E-value=0.25 Score=48.42 Aligned_cols=37 Identities=27% Similarity=0.384 Sum_probs=32.4
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.||+++|+|..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 25 ~l~~~~VlvvG~GglG~~va~~La~~-----Gv------g~i~lvD~d 61 (251)
T 1zud_1 25 KLLDSQVLIIGLGGLGTPAALYLAGA-----GV------GTLVLADDD 61 (251)
T ss_dssp HHHTCEEEEECCSTTHHHHHHHHHHT-----TC------SEEEEECCC
T ss_pred HHhcCcEEEEccCHHHHHHHHHHHHc-----CC------CeEEEEeCC
Confidence 56788999999999999999988764 87 789999987
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=90.64 E-value=1.9 Score=43.79 Aligned_cols=140 Identities=14% Similarity=0.113 Sum_probs=85.3
Q ss_pred eeeccCCCCcHHHHHHHHcCCCCeeecCCcc---hhHHHHHHHHHHHHHh---------------------CCCcccceE
Q 008629 247 IQFEDFANHNAFELLAKYGTTHLVFNDDIQG---TASVVLAGVVAALKLI---------------------GGTLAEHRF 302 (559)
Q Consensus 247 Iq~EDf~~~~Af~lL~ryr~~~~~FnDDiQG---TaaV~LAgll~Alr~~---------------------g~~l~d~ri 302 (559)
|+.-..+..|- .+-.--+..+++.|----. +|=-+++.+|+..|-. |..|.+.+|
T Consensus 80 I~~~~~G~d~i-d~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~v 158 (330)
T 2gcg_A 80 ISTMSVGIDHL-ALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTV 158 (330)
T ss_dssp EEESSSCCTTB-CHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEE
T ss_pred EEECCcccccc-cHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEE
Confidence 55555555552 1111123567777764333 3444788888877622 356889999
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcE
Q 008629 303 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 382 (559)
Q Consensus 303 v~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtv 382 (559)
.|+|.|..|..+|+.+.. .|. +++.+|+.. .+ ....+ .+ .... .+|.|+++. .|+
T Consensus 159 gIIG~G~iG~~iA~~l~~-----~G~-------~V~~~d~~~----~~---~~~~~-~~--g~~~-~~l~e~l~~--aDv 213 (330)
T 2gcg_A 159 GIIGLGRIGQAIARRLKP-----FGV-------QRFLYTGRQ----PR---PEEAA-EF--QAEF-VSTPELAAQ--SDF 213 (330)
T ss_dssp EEECCSHHHHHHHHHHGG-----GTC-------CEEEEESSS----CC---HHHHH-TT--TCEE-CCHHHHHHH--CSE
T ss_pred EEECcCHHHHHHHHHHHH-----CCC-------EEEEECCCC----cc---hhHHH-hc--Ccee-CCHHHHHhh--CCE
Confidence 999999999999998754 364 588888641 11 11111 11 0011 278888875 888
Q ss_pred EEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 383 LIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 383 LIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
+|=.-. ..+.+++++++.|. +..++.-.|+
T Consensus 214 Vi~~vp~~~~t~~~i~~~~~~~mk---~gailIn~sr 247 (330)
T 2gcg_A 214 IVVACSLTPATEGLCNKDFFQKMK---ETAVFINISR 247 (330)
T ss_dssp EEECCCCCTTTTTCBSHHHHHHSC---TTCEEEECSC
T ss_pred EEEeCCCChHHHHhhCHHHHhcCC---CCcEEEECCC
Confidence 874432 23577888888875 4567765655
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=90.64 E-value=0.35 Score=49.12 Aligned_cols=111 Identities=14% Similarity=0.079 Sum_probs=66.6
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc--Ccc--ccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK--GLI--VSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~--GLi--~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
.||+|.|| |..|..++..|+. .|+-..+-...++++|.+ .-- ..+...+|.+.-.+|..+.....++.++
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~-----~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~a 80 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIAN-----GDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTA 80 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHT-----TTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHH
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHH
Confidence 58999998 9999998877654 254111112479999975 100 0000001221101222221222578999
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
++. .|++|=+.+.+.. .++++++.+.+++ .+.+|+=.|||.
T Consensus 81 l~~--aD~Vi~~ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~~p~a~ii~~SNPv 136 (329)
T 1b8p_A 81 FKD--ADVALLVGARPRGPGMERKDLLEANAQIFTVQGKAIDAVASRNIKVLVVGNPA 136 (329)
T ss_dssp TTT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred hCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEccCch
Confidence 986 8988866554421 3567888999986 787777789998
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=90.62 E-value=1.6 Score=47.41 Aligned_cols=107 Identities=17% Similarity=0.194 Sum_probs=75.2
Q ss_pred HHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCCC
Q 008629 291 KLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVN 369 (559)
Q Consensus 291 r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~~ 369 (559)
|.++..+.+.+|+|+|+|..|.++|+.+.. .|. +++.+|++- .| + ..|+. .-...
T Consensus 266 r~~~~~l~GktV~IiG~G~IG~~~A~~lka-----~Ga-------~Viv~d~~~----~~---~-----~~A~~~Ga~~~ 321 (494)
T 3ce6_A 266 RGTDALIGGKKVLICGYGDVGKGCAEAMKG-----QGA-------RVSVTEIDP----IN---A-----LQAMMEGFDVV 321 (494)
T ss_dssp HHHCCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCH----HH---H-----HHHHHTTCEEC
T ss_pred hccCCCCCcCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEEeCCH----HH---H-----HHHHHcCCEEe
Confidence 456678899999999999999999988764 263 588887641 11 1 11211 11124
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh
Q 008629 370 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY 428 (559)
Q Consensus 370 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~ 428 (559)
++.++++. .|++|-+++..++++++.++.|. +.-+|.-.+... .|+..+..+
T Consensus 322 ~l~e~l~~--aDvVi~atgt~~~i~~~~l~~mk---~ggilvnvG~~~--~eId~~aL~ 373 (494)
T 3ce6_A 322 TVEEAIGD--ADIVVTATGNKDIIMLEHIKAMK---DHAILGNIGHFD--NEIDMAGLE 373 (494)
T ss_dssp CHHHHGGG--CSEEEECSSSSCSBCHHHHHHSC---TTCEEEECSSSG--GGBCHHHHH
T ss_pred cHHHHHhC--CCEEEECCCCHHHHHHHHHHhcC---CCcEEEEeCCCC--CccCHHHHH
Confidence 68888874 99999998888899999999986 566777777765 366655544
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=90.48 E-value=0.49 Score=47.90 Aligned_cols=101 Identities=16% Similarity=0.267 Sum_probs=64.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCCCCHHHHhccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V~~v 378 (559)
.||.|+|||..|.|+|..++.. |+ -..++|+|.+-= ..+...++.+ +... .....++ ++++.
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~-----g~-----~~ev~L~Di~~~-~~g~a~dl~~----~~~~~i~~t~d~-~~l~~- 77 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAK-----GI-----ADRLVLLDLSEG-TKGATMDLEI----FNLPNVEISKDL-SASAH- 77 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECCC------CHHHHHH----HTCTTEEEESCG-GGGTT-
T ss_pred CEEEEECCCHHHHHHHHHHHhc-----CC-----CCEEEEEcCCcc-hHHHHHHHhh----hcCCCeEEeCCH-HHHCC-
Confidence 6899999999999999988643 54 267999998631 1111001221 2111 0111466 66775
Q ss_pred CCcEEEeccCCC--CC-----------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 379 KPTILIGSSGVG--RT-----------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 379 kPtvLIG~S~~~--g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
.|++|=+.+.+ |- .-+++++.|.++++.-+|+-.|||..
T Consensus 78 -aD~Vi~aag~~~pG~tR~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~sNP~~ 129 (303)
T 2i6t_A 78 -SKVVIFTVNSLGSSQSYLDVVQSNVDMFRALVPALGHYSQHSVLLVASQPVE 129 (303)
T ss_dssp -CSEEEECCCC----CCHHHHHHHHHHHHHHHHHHHHHHTTTCEEEECSSSHH
T ss_pred -CCEEEEcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcCChHH
Confidence 89988655443 10 13578888899999999888999983
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=90.16 E-value=0.46 Score=46.70 Aligned_cols=49 Identities=18% Similarity=0.279 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.|++.+++-.|.+++..+++|+|||.+|.++|..+.. .| .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~l~~k~vlViGaGg~g~a~a~~L~~-----~G-------~~V~v~~R~ 151 (271)
T 1nyt_A 103 GVGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS-----LD-------CAVTITNRT 151 (271)
T ss_dssp HHHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEECSS
T ss_pred HHHHHHHHHhcCcCcCCCEEEEECCcHHHHHHHHHHHH-----cC-------CEEEEEECC
Confidence 56778888888889999999999999888887777754 25 368888774
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=89.92 E-value=0.23 Score=50.65 Aligned_cols=128 Identities=16% Similarity=0.232 Sum_probs=71.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc--cCCCCCHHHHhcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE--HEPVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~--~~~~~~L~e~V~~ 377 (559)
.||.|+|||+.|.++|.++.. .|+ -+++|+|.+-=..+.-...+.+...++... -....++ ++++.
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~-----~g~------~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~ 82 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQ-----KDL------GDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQN 82 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC------CEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCC
Confidence 589999999999999987765 365 139999985210000000111111111111 0011456 77775
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhccc--CCcEEEeeCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWS--KGRAIFASGS 441 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt--~G~aifAsGS 441 (559)
.|++|=+.+.+ |. .-+++.+.+.++++.-+|+-.|||.+- . .+-+.+.+ .-.-+|++|+
T Consensus 83 --aD~VI~avg~p~k~g~tr~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNP~~~--~-t~~~~~~~~~~~~rviG~~t 157 (328)
T 2hjr_A 83 --SDVVIITAGVPRKPNMTRSDLLTVNAKIVGSVAENVGKYCPNAFVICITNPLDA--M-VYYFKEKSGIPANKVCGMSG 157 (328)
T ss_dssp --CSEEEECCSCCCCTTCCSGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSHHH--H-HHHHHHHHCCCGGGEEESCH
T ss_pred --CCEEEEcCCCCCCCCCchhhHHhhhHHHHHHHHHHHHHHCCCeEEEEecCchHH--H-HHHHHHhcCCChhhEEEeCc
Confidence 89888554333 21 245678888888888887667999842 2 23333322 2233556654
Q ss_pred CCC
Q 008629 442 PFD 444 (559)
Q Consensus 442 PF~ 444 (559)
+.+
T Consensus 158 ~Ld 160 (328)
T 2hjr_A 158 VLD 160 (328)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=89.88 E-value=3.3 Score=42.14 Aligned_cols=121 Identities=14% Similarity=0.157 Sum_probs=76.4
Q ss_pred CCCCeeecCCcc---hhHHHHHHHHHHHHHh-------------------------CCCcccceEEEeCcChHHHHHHHH
Q 008629 266 TTHLVFNDDIQG---TASVVLAGVVAALKLI-------------------------GGTLAEHRFLFLGAGEAGTGIAEL 317 (559)
Q Consensus 266 ~~~~~FnDDiQG---TaaV~LAgll~Alr~~-------------------------g~~l~d~riv~~GAGsAgiGia~l 317 (559)
..+++.|----. +|=-+++.+|+..|-. |..|...+|.|+|.|..|..+|+.
T Consensus 89 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~iA~~ 168 (334)
T 2dbq_A 89 RGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKR 168 (334)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCHHHHHHHHH
Confidence 456666643322 3334677777776521 457889999999999999999998
Q ss_pred HHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCC
Q 008629 318 IALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTF 393 (559)
Q Consensus 318 l~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~F 393 (559)
+.. .|. +++.+|+.. +. ... ..+ .-...+|.++++. .|+++=.-. ..+.+
T Consensus 169 l~~-----~G~-------~V~~~d~~~----~~----~~~-~~~---g~~~~~l~~~l~~--aDvVil~vp~~~~t~~~i 222 (334)
T 2dbq_A 169 AKG-----FNM-------RILYYSRTR----KE----EVE-REL---NAEFKPLEDLLRE--SDFVVLAVPLTRETYHLI 222 (334)
T ss_dssp HHH-----TTC-------EEEEECSSC----CH----HHH-HHH---CCEECCHHHHHHH--CSEEEECCCCCTTTTTCB
T ss_pred HHh-----CCC-------EEEEECCCc----ch----hhH-hhc---CcccCCHHHHHhh--CCEEEECCCCChHHHHhh
Confidence 864 263 588888741 10 000 011 0012478888885 888874432 12577
Q ss_pred CHHHHHHHHcCCCCcEEEecCC
Q 008629 394 TKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 394 t~evv~~Ma~~~erPIIFaLSN 415 (559)
+++.++.|. +..+|.-.|.
T Consensus 223 ~~~~~~~mk---~~ailIn~sr 241 (334)
T 2dbq_A 223 NEERLKLMK---KTAILINIAR 241 (334)
T ss_dssp CHHHHHHSC---TTCEEEECSC
T ss_pred CHHHHhcCC---CCcEEEECCC
Confidence 888888885 5667776664
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=89.69 E-value=0.16 Score=51.42 Aligned_cols=105 Identities=17% Similarity=0.274 Sum_probs=62.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC-CCHHHHhccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~-~~L~e~V~~v 378 (559)
.||.|+|||..|.++|-.+... |+ ...++++|.+--..+....++.+. .++....... .+..++++.
T Consensus 7 ~kI~IIGaG~vG~sla~~l~~~-----~~-----~~ev~l~Di~~~~~~~~~~dl~~~-~~~~~~~~~i~~~~~~al~~- 74 (316)
T 1ldn_A 7 ARVVVIGAGFVGASYVFALMNQ-----GI-----ADEIVLIDANESKAIGDAMDFNHG-KVFAPKPVDIWHGDYDDCRD- 74 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHHH-TTSSSSCCEEEECCGGGTTT-
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCcchHHHHHhhHHHH-hhhcCCCeEEEcCcHHHhCC-
Confidence 5999999999999999766542 54 257999998621111000012111 1111100000 123466664
Q ss_pred CCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+. ..-+++++.|.++++.-++|-.|||-
T Consensus 75 -aDvViia~~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~~iv~tNPv 126 (316)
T 1ldn_A 75 -ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV 126 (316)
T ss_dssp -CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred -CCEEEEcCCCCCCCCCCHHHHHHcChHHHHHHHHHHHHHCCCCEEEEeCCch
Confidence 898886655443 12356788888888888888899998
|
| >3h5n_A MCCB protein; ubiquitin-activating enzyme, microcin, protein structure, MCCC7, peptide antibiotics, N-P bond formation, transferase; HET: ATP; 1.90A {Escherichia coli} PDB: 3h5r_A 3h9g_A 3h9j_A* 3h9q_A 3h5a_A | Back alignment and structure |
|---|
Probab=89.68 E-value=0.88 Score=46.97 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=33.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|+|..|..+|..|+.+ |+ ++|.++|.+
T Consensus 114 ~~L~~~~VlvvG~GglGs~va~~La~a-----Gv------g~i~lvD~D 151 (353)
T 3h5n_A 114 DKLKNAKVVILGCGGIGNHVSVILATS-----GI------GEIILIDND 151 (353)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEEECC
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHhC-----CC------CeEEEECCC
Confidence 457789999999999999999998875 76 789999986
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.28 Score=50.94 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=33.4
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.||+++|||..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 31 kL~~~~VlIvGaGGlGs~va~~La~a-----GV------g~ItlvD~D 67 (340)
T 3rui_A 31 IIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNG 67 (340)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCC
T ss_pred HHhCCEEEEECCCHHHHHHHHHHHHc-----CC------CEEEEecCC
Confidence 57889999999999999999999875 87 789999997
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=0.32 Score=49.55 Aligned_cols=101 Identities=17% Similarity=0.238 Sum_probs=63.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhcccc--CCCCCHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH--EPVNNLLD 373 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~--~~~~~L~e 373 (559)
.||.|+|||+.|.++|.++.. .|+- +++|+|.+ .++-+ .+.+...+..... ....++ +
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~-----~g~~------~v~L~Di~----~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~ 68 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQ-----KNLG------DVVLFDIV----KNMPHGKALDTSHTNVMAYSNCKVSGSNTY-D 68 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTCC------EEEEECSS----SSHHHHHHHHHHTHHHHHTCCCCEEEECCG-G
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCCC------eEEEEeCC----HHHHHHHHHHHHhhhhhcCCCcEEEECCCH-H
Confidence 489999999999999988875 3651 39999975 22110 1111100111110 011467 7
Q ss_pred HhcccCCcEEEeccCCC---CC----------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 374 AVKVIKPTILIGSSGVG---RT----------------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~---g~----------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
+++. .|++|=+.+.+ |. .-+++.+.|.++++.-+|+=.|||.+
T Consensus 69 al~~--aD~Vi~a~g~p~k~g~~~qe~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNP~~ 130 (322)
T 1t2d_A 69 DLAG--ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPVD 130 (322)
T ss_dssp GGTT--CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSHH
T ss_pred HhCC--CCEEEEeCCCCCCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCChH
Confidence 7875 89988664333 31 35678888888898888777799984
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=89.62 E-value=0.37 Score=47.47 Aligned_cols=49 Identities=24% Similarity=0.352 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.|++.+++..|..++..+++|+|||.+|.+++..|... | .+++++|+.
T Consensus 103 ~~G~~~~L~~~~~~~~~~~vlvlGaGg~g~a~a~~L~~~-----G-------~~v~v~~R~ 151 (272)
T 1p77_A 103 GIGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQA-----Q-------QNIVLANRT 151 (272)
T ss_dssp HHHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHHT-----T-------CEEEEEESS
T ss_pred HHHHHHHHHHhCCCcCCCEEEEECCcHHHHHHHHHHHHC-----C-------CEEEEEECC
Confidence 467888888888899999999999998888888777642 4 468888874
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=89.17 E-value=0.27 Score=41.90 Aligned_cols=103 Identities=13% Similarity=0.173 Sum_probs=52.9
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHH-
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDA- 374 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~- 374 (559)
++..+|+|+|+|..|..+++.+.. .|. +++++|++. ++.+.+......+.. +..+...|.++
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~-----~g~-------~v~~~d~~~----~~~~~~~~~~~~~~~~d~~~~~~l~~~~ 67 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHR-----MGH-------EVLAVDINE----EKVNAYASYATHAVIANATEENELLSLG 67 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHH-----TTC-------CCEEEESCH----HHHHTTTTTCSEEEECCTTCHHHHHTTT
T ss_pred CcCCcEEEECCCHHHHHHHHHHHH-----CCC-------EEEEEeCCH----HHHHHHHHhCCEEEEeCCCCHHHHHhcC
Confidence 455789999999999999888764 253 578888742 111112111111111 11111123332
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++ ++|++|=+.+..-..+..+++...+.+...||...+||.
T Consensus 68 ~~--~~d~vi~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~ 108 (144)
T 2hmt_A 68 IR--NFEYVIVAIGANIQASTLTTLLLKELDIPNIWVKAQNYY 108 (144)
T ss_dssp GG--GCSEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCSHH
T ss_pred CC--CCCEEEECCCCchHHHHHHHHHHHHcCCCeEEEEeCCHH
Confidence 33 589998665532012234444444455556776666665
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=89.14 E-value=1.1 Score=45.28 Aligned_cols=112 Identities=20% Similarity=0.181 Sum_probs=67.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
++.+++..... ....++.|+|+|..|-.+++.+... .++ ++++++|+. .+| ...+...|..
T Consensus 112 ~s~laa~~la~--~~~~~v~iIGaG~~a~~~~~al~~~----~~~------~~V~v~~r~----~~~---a~~la~~~~~ 172 (322)
T 1omo_A 112 AGGIAAKYLAR--KNSSVFGFIGCGTQAYFQLEALRRV----FDI------GEVKAYDVR----EKA---AKKFVSYCED 172 (322)
T ss_dssp HHHHHHHHHSC--TTCCEEEEECCSHHHHHHHHHHHHH----SCC------CEEEEECSS----HHH---HHHHHHHHHH
T ss_pred HHHHHHHhccC--CCCCEEEEEcCcHHHHHHHHHHHHh----CCc------cEEEEECCC----HHH---HHHHHHHHHh
Confidence 34555555432 3567999999999998888877653 233 678888874 222 2233333321
Q ss_pred ---ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHcCCCCcEEEecC--CCCCCCCCCHH
Q 008629 364 ---EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMASFNEKPLILALS--NPTSQSECTAE 425 (559)
Q Consensus 364 ---~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~~~erPIIFaLS--NPt~~~Ectpe 425 (559)
+.. ..++.|++ . .|++|=++..+ ..|+.+.+ .+.-.|+.++ +|. +.|+.++
T Consensus 173 ~~~~~~-~~~~~e~v-~--aDvVi~aTp~~~pv~~~~~l------~~G~~V~~ig~~~p~-~~el~~~ 229 (322)
T 1omo_A 173 RGISAS-VQPAEEAS-R--CDVLVTTTPSRKPVVKAEWV------EEGTHINAIGADGPG-KQELDVE 229 (322)
T ss_dssp TTCCEE-ECCHHHHT-S--SSEEEECCCCSSCCBCGGGC------CTTCEEEECSCCSTT-CCCBCHH
T ss_pred cCceEE-ECCHHHHh-C--CCEEEEeeCCCCceecHHHc------CCCeEEEECCCCCCC-ccccCHH
Confidence 112 46799988 4 89998766533 23443322 2456888883 455 6777764
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=89.08 E-value=1.6 Score=42.85 Aligned_cols=81 Identities=20% Similarity=0.192 Sum_probs=55.7
Q ss_pred eccCCCCcHHHHHHHHcC------CCCeeecCCcchhHHHHHHHHHHHHHh-CCCcccceEEEeC-cChHHHHHHHHHHH
Q 008629 249 FEDFANHNAFELLAKYGT------THLVFNDDIQGTASVVLAGVVAALKLI-GGTLAEHRFLFLG-AGEAGTGIAELIAL 320 (559)
Q Consensus 249 ~EDf~~~~Af~lL~ryr~------~~~~FnDDiQGTaaV~LAgll~Alr~~-g~~l~d~riv~~G-AGsAgiGia~ll~~ 320 (559)
++-+.-..+.+++++-+. +..+| .|..|.- ..-.|++.+++-. +.+++..+++|.| +|.+|.+++..+.+
T Consensus 64 ~~G~~~~~~~~~~~~~~~~~~gavnt~~~-~~~~G~n-Td~~g~~~~l~~~~~~~l~gk~vlVtGaaGGiG~aia~~L~~ 141 (287)
T 1lu9_A 64 VGGGDMAAGERVFEAVKKRFFGPFRVSCM-LDSNGSN-TTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAG 141 (287)
T ss_dssp EECSCHHHHHHHHHHHHHHCBTTBCCEEE-ECSTTHH-HHHHHHHHHHHHHTTSCCTTCEEEEETCSSHHHHHHHHHHHH
T ss_pred EccchHHHHHHHHHHHHHhcCCCeEEEEe-cCCCcCC-chHHHHHHHHHHhhccCCCCCEEEEECCCcHHHHHHHHHHHH
Confidence 444444577788887653 23344 4455532 2456777888776 7889999999999 89888888888765
Q ss_pred HHHHhcCCChhhhcccEEEEccc
Q 008629 321 EISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 321 ~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|. +++++|++
T Consensus 142 -----~G~-------~V~i~~R~ 152 (287)
T 1lu9_A 142 -----EGA-------EVVLCGRK 152 (287)
T ss_dssp -----TTC-------EEEEEESS
T ss_pred -----CcC-------EEEEEECC
Confidence 363 38888874
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=89.04 E-value=0.31 Score=49.77 Aligned_cols=106 Identities=15% Similarity=0.268 Sum_probs=63.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
..||.|+|||+.|..++-+|+.. ++ -..++|+|.+-=-.++...+|.+.. +|..+..-..+..++++.
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~-----~~-----~~el~L~Di~~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~~~- 76 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI-----AQEIGIVDIFKDKTKGDAIDLSNAL-PFTSPKKIYSAEYSDAKD- 76 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHTTG-GGSCCCEEEECCGGGGGG-
T ss_pred CCEEEEECCCHHHHHHHHHHHcC-----CC-----CCEEEEEeCCchHhHHHHHHHHHHH-HhcCCeEEEECCHHHhCC-
Confidence 36999999999999988876542 54 2679999984100000000122111 222111000134666776
Q ss_pred CCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+.. .-+++++.|.++++.-+|+-.|||.
T Consensus 77 -aDvVii~ag~~~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 128 (326)
T 2zqz_A 77 -ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV 128 (326)
T ss_dssp -CSEEEECCCCC-----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred -CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 8999866655432 1245677778889999999999998
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=88.96 E-value=2 Score=40.90 Aligned_cols=92 Identities=11% Similarity=0.215 Sum_probs=60.7
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
..||.|+|+|..|..+|..|... |.. ...+++++|+. .++ +. + ....++.|+++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~-----g~~---~~~~v~~~~~~----~~~------~g---~---~~~~~~~~~~~~- 58 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANA-----NII---KKENLFYYGPS----KKN------TT---L---NYMSSNEELARH- 58 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHH-----TSS---CGGGEEEECSS----CCS------SS---S---EECSCHHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-----CCC---CCCeEEEEeCC----ccc------Cc---e---EEeCCHHHHHhc-
Confidence 35899999999999999988753 520 01368888864 111 00 0 112467788875
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
+|++| ++..+ ...+++++.+..+.+..+|+.++|..+
T Consensus 59 -~D~vi-~~v~~-~~~~~v~~~l~~~l~~~~vv~~~~gi~ 95 (262)
T 2rcy_A 59 -CDIIV-CAVKP-DIAGSVLNNIKPYLSSKLLISICGGLN 95 (262)
T ss_dssp -CSEEE-ECSCT-TTHHHHHHHSGGGCTTCEEEECCSSCC
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 78777 33333 457888888876656667888888774
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.90 E-value=1 Score=45.27 Aligned_cols=113 Identities=16% Similarity=0.142 Sum_probs=64.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
++.+++.... +....+|.|+|+|..|..++..+... .|. ++++++|+. .++ .......+..
T Consensus 122 ~~~la~~~la--~~~~~~igiIG~G~~g~~~a~~l~~~----~g~------~~V~v~dr~----~~~---~~~l~~~~~~ 182 (312)
T 2i99_A 122 VSAIATKFLK--PPSSEVLCILGAGVQAYSHYEIFTEQ----FSF------KEVRIWNRT----KEN---AEKFADTVQG 182 (312)
T ss_dssp HHHHHHHHHS--CTTCCEEEEECCSHHHHHHHHHHHHH----CCC------SEEEEECSS----HHH---HHHHHHHSSS
T ss_pred HHHHHHHHhC--CCCCcEEEEECCcHHHHHHHHHHHHh----CCC------cEEEEEcCC----HHH---HHHHHHHhhC
Confidence 3455553332 45667999999999999998887653 253 578888763 111 2222222110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCC-CCCCCHHHHHHHHcCCCCcEEEecCC--CCCCCCCCH
Q 008629 364 EHEPVNNLLDAVKVIKPTILIGSSGV-GRTFTKEVIEAMASFNEKPLILALSN--PTSQSECTA 424 (559)
Q Consensus 364 ~~~~~~~L~e~V~~vkPtvLIG~S~~-~g~Ft~evv~~Ma~~~erPIIFaLSN--Pt~~~Ectp 424 (559)
......++.|+++. +|++|=+... ..+|.++ ...+.-+|+.+|+ |. .-|+.+
T Consensus 183 ~~~~~~~~~e~v~~--aDiVi~atp~~~~v~~~~------~l~~g~~vi~~g~~~p~-~~el~~ 237 (312)
T 2i99_A 183 EVRVCSSVQEAVAG--ADVIITVTLATEPILFGE------WVKPGAHINAVGASRPD-WRELDD 237 (312)
T ss_dssp CCEECSSHHHHHTT--CSEEEECCCCSSCCBCGG------GSCTTCEEEECCCCSTT-CCSBCH
T ss_pred CeEEeCCHHHHHhc--CCEEEEEeCCCCcccCHH------HcCCCcEEEeCCCCCCC-ceeccH
Confidence 01123689999985 8988855432 2233332 1235568887743 43 355543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.81 E-value=0.38 Score=48.92 Aligned_cols=105 Identities=12% Similarity=0.226 Sum_probs=63.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||.|+|||+.|..++-+|+.. ++ -..|+|+|.+-=-.++-..+|.+.. +|..+..-..+..++++.
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~-----~~-----~~el~L~Di~~~~~~g~~~dl~~~~-~~~~~~~v~~~~~~a~~~-- 72 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQ-----GI-----AEEFVIVDVVKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSDCKD-- 72 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSHHHHHHHHHHHHGGG-GGSCCCEEEECCGGGGTT--
T ss_pred CEEEEECCCHHHHHHHHHHHcC-----CC-----CCEEEEEeCCchHHHHHHHHHHHHH-HhcCCeEEEECCHHHhCC--
Confidence 6999999999999988876542 54 2679999984100000000122211 232211000134566775
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 380 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+.. .-+++++.|.++++.-+|+-.|||.
T Consensus 73 aDvVii~ag~~~~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 124 (318)
T 1ez4_A 73 ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124 (318)
T ss_dssp CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred CCEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCCcH
Confidence 8998865554421 2345677788899999999999998
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=88.80 E-value=0.33 Score=46.78 Aligned_cols=99 Identities=14% Similarity=0.236 Sum_probs=60.8
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
.++...||.|+|+|..|..+|..+... |. +.++++|++ . +.+......+ ......++.|+
T Consensus 6 ~~~~~m~i~iiG~G~mG~~~a~~l~~~-----g~------~~v~~~~~~----~---~~~~~~~~~~--g~~~~~~~~~~ 65 (266)
T 3d1l_A 6 RSIEDTPIVLIGAGNLATNLAKALYRK-----GF------RIVQVYSRT----E---ESARELAQKV--EAEYTTDLAEV 65 (266)
T ss_dssp -CGGGCCEEEECCSHHHHHHHHHHHHH-----TC------CEEEEECSS----H---HHHHHHHHHT--TCEEESCGGGS
T ss_pred cCCCCCeEEEEcCCHHHHHHHHHHHHC-----CC------eEEEEEeCC----H---HHHHHHHHHc--CCceeCCHHHH
Confidence 345567999999999999999988653 53 237778763 1 1122221111 00112467777
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
++ ++|++|=+.. ... .+++++.+.... +..+|.-+||-.
T Consensus 66 ~~--~~Dvvi~av~-~~~-~~~v~~~l~~~~~~~~ivv~~s~~~ 105 (266)
T 3d1l_A 66 NP--YAKLYIVSLK-DSA-FAELLQGIVEGKREEALMVHTAGSI 105 (266)
T ss_dssp CS--CCSEEEECCC-HHH-HHHHHHHHHTTCCTTCEEEECCTTS
T ss_pred hc--CCCEEEEecC-HHH-HHHHHHHHHhhcCCCcEEEECCCCC
Confidence 76 4888884433 333 388888887644 567888888854
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=88.73 E-value=0.25 Score=52.87 Aligned_cols=127 Identities=13% Similarity=0.190 Sum_probs=75.3
Q ss_pred ceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc--c-cCC---CCCHH
Q 008629 300 HRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH--E-HEP---VNNLL 372 (559)
Q Consensus 300 ~riv~~GAGsA-giGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~--~-~~~---~~~L~ 372 (559)
.||.|+|||+. |.+++..|+.. ..++. ...++|+|.+-- ++|.+.+......+.. . ... ..++.
T Consensus 8 ~KIaVIGaGsv~~~al~~~L~~~---~~~l~----~~ev~L~Di~~~--~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~ 78 (450)
T 1s6y_A 8 LKIATIGGGSSYTPELVEGLIKR---YHELP----VGELWLVDIPEG--KEKLEIVGALAKRMVEKAGVPIEIHLTLDRR 78 (450)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHT---TTTCC----EEEEEEECCGGG--HHHHHHHHHHHHHHHHHTTCCCEEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHcC---CCCCC----CCEEEEEEcCCC--hHHHHHHHHHHHHHHhhcCCCcEEEEeCCHH
Confidence 59999999997 55555555431 12442 367999998520 0211111111122211 0 111 24788
Q ss_pred HHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++++. .|++|=+.+.++. .=+++++.|.++|+.-+|+-.|||..
T Consensus 79 eal~g--AD~VVitagv~~~~~~~rd~~ip~~~g~~~~et~G~ggi~~~~rni~i~~~i~~~i~~~~P~a~ii~~tNPvd 156 (450)
T 1s6y_A 79 RALDG--ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPAG 156 (450)
T ss_dssp HHHTT--CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH
T ss_pred HHhCC--CCEEEEcCCCCCCcchhhhhhhhhhcCcccccccccchHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHH
Confidence 99986 9999866665421 13588899999999999999999982
Q ss_pred CCCCCHHHHhcccCCcEEEeeC
Q 008629 419 QSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 419 ~~EctpedA~~wt~G~aifAsG 440 (559)
+..+-+++.+.-.-+|.+|
T Consensus 157 ---ivT~a~~k~~p~~rViG~c 175 (450)
T 1s6y_A 157 ---MVTEAVLRYTKQEKVVGLC 175 (450)
T ss_dssp ---HHHHHHHHHCCCCCEEECC
T ss_pred ---HHHHHHHHhCCCCCEEEeC
Confidence 2233344555332566654
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=88.63 E-value=0.54 Score=47.44 Aligned_cols=100 Identities=18% Similarity=0.412 Sum_probs=60.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCC----CchhchhhccccC-CCCCHHHHh
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDS----LQHFKKPWAHEHE-PVNNLLDAV 375 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~----l~~~k~~fA~~~~-~~~~L~e~V 375 (559)
||.|+|||+.|.++|..+... |. ...++++|.+- ++.+. +.+. .++..... ...+ .+++
T Consensus 2 kI~VIGaG~~G~~la~~l~~~-----g~-----~~~V~l~D~~~----~~~~~~~~~l~~~-~~~~~~~~i~~~d-~~~~ 65 (319)
T 1a5z_A 2 KIGIVGLGRVGSSTAFALLMK-----GF-----AREMVLIDVDK----KRAEGDALDLIHG-TPFTRRANIYAGD-YADL 65 (319)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSSH----HHHHHHHHHHHHH-GGGSCCCEEEECC-GGGG
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEeCCh----HHHHHHHHHHHhh-hhhcCCcEEEeCC-HHHh
Confidence 799999999999999887653 54 14799999751 11000 1100 01110000 0023 3456
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 376 KVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
+ ..|++|=+...+.. .-+++++.|.++++.-+|+-.|||..
T Consensus 66 ~--~aDvViiav~~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~ii~~tNp~~ 120 (319)
T 1a5z_A 66 K--GSDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPVD 120 (319)
T ss_dssp T--TCSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSHH
T ss_pred C--CCCEEEEccCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcHH
Confidence 5 48888755444431 12688889988888878888999984
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=88.51 E-value=0.47 Score=48.04 Aligned_cols=107 Identities=13% Similarity=0.250 Sum_probs=65.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc-cccCCCCCHHHHhc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-HEHEPVNNLLDAVK 376 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA-~~~~~~~~L~e~V~ 376 (559)
...||.|+|||..|..+|-.|+.. |+ -..++|+|.+-=..++...+|.+. .+|. ++..-..+..++++
T Consensus 5 ~~~KI~IIGaG~vG~~la~~l~~~-----~~-----~~ei~L~Di~~~~~~g~~~dl~~~-~~~~~~~~~v~~~~~~a~~ 73 (317)
T 3d0o_A 5 KGNKVVLIGNGAVGSSYAFSLVNQ-----SI-----VDELVIIDLDTEKVRGDVMDLKHA-TPYSPTTVRVKAGEYSDCH 73 (317)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHH-----CS-----CSEEEEECSCHHHHHHHHHHHHHH-GGGSSSCCEEEECCGGGGT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCChhHhhhhhhhHHhh-hhhcCCCeEEEeCCHHHhC
Confidence 456999999999999988876542 54 257999997510000000012222 2332 11000013466777
Q ss_pred ccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
. .|++|=+.+.+.. .=+++++.|.++++.-+|+-.|||.
T Consensus 74 ~--aDvVvi~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 126 (317)
T 3d0o_A 74 D--ADLVVICAGAAQKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVATNPV 126 (317)
T ss_dssp T--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred C--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCcH
Confidence 5 8998866555432 1245777788899999999999998
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=88.40 E-value=0.32 Score=52.48 Aligned_cols=126 Identities=17% Similarity=0.258 Sum_probs=75.3
Q ss_pred cceEEEeCcChH-HHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc-c-c-cCC---CCCH
Q 008629 299 EHRFLFLGAGEA-GTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-H-E-HEP---VNNL 371 (559)
Q Consensus 299 d~riv~~GAGsA-giGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA-~-~-~~~---~~~L 371 (559)
..||.|+|||+. +.++|..|+.. ..++. -..++|+|.+- ++-+.+.+....+. . . ... ..++
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~---~~~l~----~~eV~L~Di~~----e~~~~~~~~~~~~l~~~~~~~~I~~t~D~ 96 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDH---LEEFP----IRKLKLYDNDK----ERQDRIAGACDVFIREKAPDIEFAATTDP 96 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHT---TTTSC----EEEEEEECSCH----HHHHHHHHHHHHHHHHHCTTSEEEEESCH
T ss_pred CCEEEEECCCHHHHHHHHHHHHhC---CCCCC----CCEEEEEeCCH----HHHHHHHHHHHHHhccCCCCCEEEEECCH
Confidence 469999999996 55566665431 01441 35799999852 22111111112221 1 1 111 2478
Q ss_pred HHHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.++++. .|++|=+.+.++. .=+++++.|.++|+.-+|+-.|||.
T Consensus 97 ~eal~~--AD~VViaag~~~~~g~~rd~~ip~k~g~~~~eT~G~ggl~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPv 174 (472)
T 1u8x_X 97 EEAFTD--VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 174 (472)
T ss_dssp HHHHSS--CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCH
T ss_pred HHHHcC--CCEEEEcCCCccccccchhhhhhhhcCcccccccCchhHHHHhhhHHHHHHHHHHHHHHCCCeEEEEeCCcH
Confidence 899986 9998866655321 1358889999999999999999998
Q ss_pred CCCCCCHHHHhcccCCcEEEeeC
Q 008629 418 SQSECTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 418 ~~~EctpedA~~wt~G~aifAsG 440 (559)
. +..+-+++.+.-.-+|.+|
T Consensus 175 d---i~T~~~~k~~p~~rViG~c 194 (472)
T 1u8x_X 175 A---IVAEATRRLRPNSKILNIC 194 (472)
T ss_dssp H---HHHHHHHHHSTTCCEEECC
T ss_pred H---HHHHHHHHhCCCCCEEEeC
Confidence 2 2333344544333466554
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=88.31 E-value=0.45 Score=49.28 Aligned_cols=96 Identities=18% Similarity=0.303 Sum_probs=61.8
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc----cCCCCCH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE----HEPVNNL 371 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~----~~~~~~L 371 (559)
.+...+++|+|+|..|..+|+.+.. .|. +++.+|+. ..| +...+..+... .....++
T Consensus 165 ~l~g~~V~ViG~G~iG~~~a~~a~~-----~Ga-------~V~~~d~~----~~~---l~~~~~~~g~~~~~~~~~~~~l 225 (377)
T 2vhw_A 165 GVEPADVVVIGAGTAGYNAARIANG-----MGA-------TVTVLDIN----IDK---LRQLDAEFCGRIHTRYSSAYEL 225 (377)
T ss_dssp TBCCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESC----HHH---HHHHHHHTTTSSEEEECCHHHH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHh-----CCC-------EEEEEeCC----HHH---HHHHHHhcCCeeEeccCCHHHH
Confidence 4778999999999999999988764 263 58888874 111 21111112110 0011357
Q ss_pred HHHhcccCCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 372 LDAVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
.+.++. .|++|.+...+ ..++++.++.|. +.-+|.=+|-
T Consensus 226 ~~~l~~--aDvVi~~~~~p~~~t~~li~~~~l~~mk---~g~~iV~va~ 269 (377)
T 2vhw_A 226 EGAVKR--ADLVIGAVLVPGAKAPKLVSNSLVAHMK---PGAVLVDIAI 269 (377)
T ss_dssp HHHHHH--CSEEEECCCCTTSCCCCCBCHHHHTTSC---TTCEEEEGGG
T ss_pred HHHHcC--CCEEEECCCcCCCCCcceecHHHHhcCC---CCcEEEEEec
Confidence 787874 89999877544 357899998885 4456666663
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=88.16 E-value=3.7 Score=42.42 Aligned_cols=192 Identities=16% Similarity=0.109 Sum_probs=111.4
Q ss_pred CCCCeeecCC---cchhHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcChHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDI---QGTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 266 ~~~~~FnDDi---QGTaaV~LAgll~Alr~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~ 321 (559)
..+++.|--- +.+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|-.+|+.+..
T Consensus 116 ~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l~~- 194 (345)
T 4g2n_A 116 LGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARG- 194 (345)
T ss_dssp TTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHHHHHHHHHHHT-
T ss_pred CCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChhHHHHHHHHHH-
Confidence 4666666532 23455677888877763 2567899999999999999999999864
Q ss_pred HHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHH
Q 008629 322 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEV 397 (559)
Q Consensus 322 ~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~ev 397 (559)
.|+ +++.+|+... .... +.......+|.|+++. .|+++=.-- .-+.|+++.
T Consensus 195 ----~G~-------~V~~~dr~~~-------~~~~-----~~g~~~~~~l~ell~~--sDvV~l~~Plt~~T~~li~~~~ 249 (345)
T 4g2n_A 195 ----FGL-------AIHYHNRTRL-------SHAL-----EEGAIYHDTLDSLLGA--SDIFLIAAPGRPELKGFLDHDR 249 (345)
T ss_dssp ----TTC-------EEEEECSSCC-------CHHH-----HTTCEECSSHHHHHHT--CSEEEECSCCCGGGTTCBCHHH
T ss_pred ----CCC-------EEEEECCCCc-------chhh-----hcCCeEeCCHHHHHhh--CCEEEEecCCCHHHHHHhCHHH
Confidence 264 5888887521 0110 0011112579999985 898885432 237899999
Q ss_pred HHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC-CCCceeCCeeeCccCccccccchhhHHHHHHhCC
Q 008629 398 IEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP-FDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGA 476 (559)
Q Consensus 398 v~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSP-F~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a 476 (559)
++.|. +..|+.=.|+-..--|-.-.+|+ .+|+.-.| |-. |++- - .....-=+..|+.+-|=+|-....+
T Consensus 250 l~~mk---~gailIN~aRG~~vde~aL~~aL--~~g~i~gA-~LDVf~~E-P-~~~~pL~~~~nvilTPHia~~t~e~-- 319 (345)
T 4g2n_A 250 IAKIP---EGAVVINISRGDLINDDALIEAL--RSKHLFAA-GLDVFANE-P-AIDPRYRSLDNIFLTPHIGSATHET-- 319 (345)
T ss_dssp HHHSC---TTEEEEECSCGGGBCHHHHHHHH--HHTSEEEE-EESCCTTT-T-SCCTTGGGCTTEEECCSCTTCBHHH--
T ss_pred HhhCC---CCcEEEECCCCchhCHHHHHHHH--HhCCceEE-EecCCCCC-C-CCCchHHhCCCEEEcCccCcCCHHH--
Confidence 99996 67788877763322222222333 34654332 211 1100 0 0001112456888888765322211
Q ss_pred cccCHHHHHHHHHHHHhccC
Q 008629 477 IRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 477 ~~Itd~m~~aAA~aLA~~v~ 496 (559)
.+.|...+++-|.....
T Consensus 320 ---~~~~~~~~~~ni~~~l~ 336 (345)
T 4g2n_A 320 ---RDAMGWLLIQGIEALNQ 336 (345)
T ss_dssp ---HHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHHHHHc
Confidence 24555666666665554
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=87.93 E-value=0.88 Score=45.69 Aligned_cols=100 Identities=21% Similarity=0.313 Sum_probs=60.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC----chhchhhcccc--CCCCCHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL----QHFKKPWAHEH--EPVNNLLDA 374 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l----~~~k~~fA~~~--~~~~~L~e~ 374 (559)
||.|+|||..|.++|..+... ++ -..++++|.+- ++-+.+ .+....+.... ....++.+
T Consensus 2 kI~VIGaG~vG~~la~~la~~-----~~-----g~~V~l~D~~~----~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~- 66 (310)
T 1guz_A 2 KITVIGAGNVGATTAFRLAEK-----QL-----ARELVLLDVVE----GIPQGKALDMYESGPVGLFDTKVTGSNDYAD- 66 (310)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-----CSEEEEECSSS----SHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCCh----hHHHHHHHhHHhhhhcccCCcEEEECCCHHH-
Confidence 799999999999999887642 22 25799999862 211111 11100010000 01135555
Q ss_pred hcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++. .|++|=+.+.+ |- .-+++.+.|.++++.-+|+-.|||-
T Consensus 67 l~~--aDvViiav~~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~tNP~ 121 (310)
T 1guz_A 67 TAN--SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121 (310)
T ss_dssp GTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSH
T ss_pred HCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEcCch
Confidence 654 88887554432 22 1157778888888888888899997
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=87.86 E-value=0.54 Score=47.67 Aligned_cols=101 Identities=23% Similarity=0.354 Sum_probs=61.5
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhccccCCCCCHHHHh
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
.||.|+|||..|..+|-+|+. .|+ -..++++|.+ .+|-+ +|.+.. +|.++..-..+-.+++
T Consensus 8 ~KI~IiGaG~vG~~~a~~l~~-----~~~-----~~ev~L~Di~----~~~~~g~~~dl~~~~-~~~~~~~i~~~~~~a~ 72 (318)
T 1y6j_A 8 SKVAIIGAGFVGASAAFTMAL-----RQT-----ANELVLIDVF----KEKAIGEAMDINHGL-PFMGQMSLYAGDYSDV 72 (318)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTC-----SSEEEEECCC-------CCHHHHHHTTSC-CCTTCEEEC--CGGGG
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCC----hHHHHHHHHHHHHhH-HhcCCeEEEECCHHHh
Confidence 589999999999998877654 254 2579999975 22211 111111 1211100001225566
Q ss_pred cccCCcEEEeccCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCC
Q 008629 376 KVIKPTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~F--------------t~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+. .|++|=+.+.+..- -+++++.|.++++.-+|+=.|||.
T Consensus 73 ~~--aDvVii~~g~p~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~tNPv 126 (318)
T 1y6j_A 73 KD--CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV 126 (318)
T ss_dssp TT--CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSH
T ss_pred CC--CCEEEEcCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEecCcH
Confidence 65 89988655544211 168889999999999999999997
|
| >3h8v_A Ubiquitin-like modifier-activating enzyme 5; rossman fold, ATP-binding, UBL conjugation pathway, transfer structural genomics consortium, SGC; HET: ATP; 2.00A {Homo sapiens} PDB: 3guc_A* | Back alignment and structure |
|---|
Probab=87.75 E-value=0.56 Score=47.61 Aligned_cols=38 Identities=21% Similarity=0.309 Sum_probs=34.4
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+|+|+|..|.-+|+.|+.+ |+ .+|.++|.+
T Consensus 32 ~kL~~~~VlVvGaGGlGs~va~~La~a-----GV------G~i~lvD~D 69 (292)
T 3h8v_A 32 EKIRTFAVAIVGVGGVGSVTAEMLTRC-----GI------GKLLLFDYD 69 (292)
T ss_dssp CGGGGCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHHhCCeEEEECcCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 478999999999999999999999876 76 789999987
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=87.69 E-value=0.53 Score=48.37 Aligned_cols=106 Identities=15% Similarity=0.255 Sum_probs=65.0
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
..||.|+|||..|..+|..|+.. |+ ...+.++|..-=..++-.-+|.+. .+|.....-..+..++++.
T Consensus 9 ~~kV~ViGaG~vG~~~a~~l~~~-----~~-----~~el~l~D~~~~k~~g~a~DL~~~-~~~~~~~~i~~~~~~a~~~- 76 (326)
T 3vku_A 9 HQKVILVGDGAVGSSYAYAMVLQ-----GI-----AQEIGIVDIFKDKTKGDAIDLEDA-LPFTSPKKIYSAEYSDAKD- 76 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSCHHHHHHHHHHHHTT-GGGSCCCEEEECCGGGGTT-
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEeCChHHHHHHHhhHhhh-hhhcCCcEEEECcHHHhcC-
Confidence 46899999999999999888763 55 257999998310000000012222 1232111001233456665
Q ss_pred CCcEEEeccCCC---C-----CC------CHHHHHHHHcCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVG---R-----TF------TKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~---g-----~F------t~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ | +| -+++++.|.++++.-+|+-.|||.
T Consensus 77 -aDiVvi~ag~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvtNPv 128 (326)
T 3vku_A 77 -ADLVVITAGAPQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAANPV 128 (326)
T ss_dssp -CSEEEECCCCC----------------CHHHHHHHHHTTTCCSEEEECSSSH
T ss_pred -CCEEEECCCCCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEccCch
Confidence 88877554433 1 23 368888999999999999999998
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=87.64 E-value=0.98 Score=48.46 Aligned_cols=101 Identities=11% Similarity=0.151 Sum_probs=63.1
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHHh
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAV 375 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V 375 (559)
++..+|.|+|+|..|..+|..|.+ .|. +++++|+. .+ ........+.. ......++.|++
T Consensus 13 ~~~~~IgvIGlG~MG~~lA~~La~-----~G~-------~V~v~~r~----~~---~~~~l~~~~~~~gi~~~~s~~e~v 73 (480)
T 2zyd_A 13 MSKQQIGVVGMAVMGRNLALNIES-----RGY-------TVSIFNRS----RE---KTEEVIAENPGKKLVPYYTVKEFV 73 (480)
T ss_dssp --CBSEEEECCSHHHHHHHHHHHT-----TTC-------CEEEECSS----HH---HHHHHHHHSTTSCEEECSSHHHHH
T ss_pred cCCCeEEEEccHHHHHHHHHHHHh-----CCC-------eEEEEeCC----HH---HHHHHHhhCCCCCeEEeCCHHHHH
Confidence 566789999999999999999875 364 57777763 11 12222111100 011135788888
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 376 KVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 376 ~~v-kPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
+.. +||++| ++-..+...+++++.+...- +..||.-+||-.
T Consensus 74 ~~l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~g~ 116 (480)
T 2zyd_A 74 ESLETPRRIL-LMVKAGAGTDAAIDSLKPYLDKGDIIIDGGNTF 116 (480)
T ss_dssp HTBCSSCEEE-ECSCSSSHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred hCCCCCCEEE-EECCCHHHHHHHHHHHHhhcCCCCEEEECCCCC
Confidence 753 478777 45445456788888887554 356888888865
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=87.57 E-value=2.7 Score=42.99 Aligned_cols=92 Identities=15% Similarity=0.259 Sum_probs=63.7
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.+|+.. .. ... + . ...+|.|
T Consensus 159 ~~~l~g~~vgIIG~G~iG~~vA~~l~~-----~G~-------~V~~~dr~~----~~---~~g----~-~---~~~~l~e 211 (333)
T 3ba1_A 159 TTKFSGKRVGIIGLGRIGLAVAERAEA-----FDC-------PISYFSRSK----KP---NTN----Y-T---YYGSVVE 211 (333)
T ss_dssp CCCCTTCCEEEECCSHHHHHHHHHHHT-----TTC-------CEEEECSSC----CT---TCC----S-E---EESCHHH
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHH-----CCC-------EEEEECCCc----hh---ccC----c-e---ecCCHHH
Confidence 467889999999999999999998864 364 588888642 11 110 1 0 1247889
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+++. .|+++=.-- ..+.++++.++.|. +..+|.-.|.-.
T Consensus 212 ll~~--aDvVil~vP~~~~t~~li~~~~l~~mk---~gailIn~srG~ 254 (333)
T 3ba1_A 212 LASN--SDILVVACPLTPETTHIINREVIDALG---PKGVLINIGRGP 254 (333)
T ss_dssp HHHT--CSEEEECSCCCGGGTTCBCHHHHHHHC---TTCEEEECSCGG
T ss_pred HHhc--CCEEEEecCCChHHHHHhhHHHHhcCC---CCCEEEECCCCc
Confidence 8885 898875421 23688889999885 566777666643
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=87.54 E-value=0.49 Score=41.65 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=25.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|+|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 4 dV~IIGaGpaGL~aA~~La~-----~G~-------~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTA-----AGH-------QVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEECC
Confidence 49999999999999998876 376 47788864
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=87.38 E-value=1.4 Score=44.08 Aligned_cols=100 Identities=19% Similarity=0.206 Sum_probs=57.8
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|++.+++..| +.|++|+|||.+|-+++..|... | .+|+++++. .+|.+.|. .+.-
T Consensus 107 ~Gf~~~L~~~~----~k~vlvlGaGGaaraia~~L~~~-----G-------~~v~V~nRt----~~ka~~la----~~~~ 162 (269)
T 3phh_A 107 LGFYLSLKQKN----YQNALILGAGGSAKALACELKKQ-----G-------LQVSVLNRS----SRGLDFFQ----RLGC 162 (269)
T ss_dssp HHHHHHCC-------CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSS----CTTHHHHH----HHTC
T ss_pred HHHHHHHHHcC----CCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEeCC----HHHHHHHH----HCCC
Confidence 34566665433 78999999999998888887653 4 468888874 33321122 1110
Q ss_pred ccCCCCCHHHHhcccCCcEEEeccCCC----CCCCHHHHH-HHHcCCCCcEEEecC-CC
Q 008629 364 EHEPVNNLLDAVKVIKPTILIGSSGVG----RTFTKEVIE-AMASFNEKPLILALS-NP 416 (559)
Q Consensus 364 ~~~~~~~L~e~V~~vkPtvLIG~S~~~----g~Ft~evv~-~Ma~~~erPIIFaLS-NP 416 (559)
......+| . ++|++|-++..| ..+.++.+. .+. +..+++=++ ||
T Consensus 163 ~~~~~~~l----~--~~DiVInaTp~Gm~~~~~l~~~~l~~~l~---~~~~v~D~vY~P 212 (269)
T 3phh_A 163 DCFMEPPK----S--AFDLIINATSASLHNELPLNKEVLKGYFK---EGKLAYDLAYGF 212 (269)
T ss_dssp EEESSCCS----S--CCSEEEECCTTCCCCSCSSCHHHHHHHHH---HCSEEEESCCSS
T ss_pred eEecHHHh----c--cCCEEEEcccCCCCCCCCCChHHHHhhCC---CCCEEEEeCCCC
Confidence 11111222 1 699999776654 147777555 344 456777654 44
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.23 E-value=3.7 Score=41.32 Aligned_cols=109 Identities=15% Similarity=0.179 Sum_probs=73.3
Q ss_pred hhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEE
Q 008629 278 TASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL 339 (559)
Q Consensus 278 TaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~l 339 (559)
+|=-+++.+|+..|- .|..|.+.+|.|+|.|..|..+|+.+.. .|+ +++.
T Consensus 103 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~-----~G~-------~V~~ 170 (307)
T 1wwk_A 103 VAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANA-----LGM-------NILL 170 (307)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEE
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHHHHH-----CCC-------EEEE
Confidence 344467777777662 3467899999999999999999998864 264 5888
Q ss_pred EcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 340 VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 340 vD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
+|+.. . . ...+ .+ .-...+|.|+++. .|+++=.-- ..+.++++.++.|. +.-++.=.|.
T Consensus 171 ~d~~~----~---~-~~~~-~~---g~~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~l~~mk---~ga~lin~ar 233 (307)
T 1wwk_A 171 YDPYP----N---E-ERAK-EV---NGKFVDLETLLKE--SDVVTIHVPLVESTYHLINEERLKLMK---KTAILINTSR 233 (307)
T ss_dssp ECSSC----C---H-HHHH-HT---TCEECCHHHHHHH--CSEEEECCCCSTTTTTCBCHHHHHHSC---TTCEEEECSC
T ss_pred ECCCC----C---h-hhHh-hc---CccccCHHHHHhh--CCEEEEecCCChHHhhhcCHHHHhcCC---CCeEEEECCC
Confidence 88641 1 0 0011 11 0111378898875 898885422 24678899999886 5668887776
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=87.13 E-value=0.52 Score=52.60 Aligned_cols=37 Identities=27% Similarity=0.450 Sum_probs=33.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.||+++|||..|.-+|+.|+.+ |+ ++|.++|.+
T Consensus 323 kL~~arVLIVGaGGLGs~vA~~La~a-----GV------G~ItLvD~D 359 (615)
T 4gsl_A 323 IIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNG 359 (615)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHT-----TC------CEEEEECCC
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEcCC
Confidence 57889999999999999999999875 87 789999997
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=87.00 E-value=4.4 Score=41.22 Aligned_cols=137 Identities=10% Similarity=0.092 Sum_probs=88.2
Q ss_pred eeeccCCCCcHHHHHHHHcCCCCeeecCCcc---hhHHHHHHHHHHHHH-------------------hCCCcccceEEE
Q 008629 247 IQFEDFANHNAFELLAKYGTTHLVFNDDIQG---TASVVLAGVVAALKL-------------------IGGTLAEHRFLF 304 (559)
Q Consensus 247 Iq~EDf~~~~Af~lL~ryr~~~~~FnDDiQG---TaaV~LAgll~Alr~-------------------~g~~l~d~riv~ 304 (559)
|+.--.+..|- ++-.--+..+.+.|---.. +|=-+++.+|+..|- .|..|.+.+|.|
T Consensus 73 I~~~~~G~d~i-d~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgI 151 (331)
T 1xdw_A 73 ILTRTAGTDHI-DKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGV 151 (331)
T ss_dssp EEESSSCCTTB-CHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEE
T ss_pred EEEcccccccc-CHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEE
Confidence 55555555542 2212223567777753333 344478888887761 234688999999
Q ss_pred eCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEE
Q 008629 305 LGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILI 384 (559)
Q Consensus 305 ~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLI 384 (559)
+|.|..|..+|+.+... |+ +++.+|+.. .. . +. .++. ..+|.|+++. .|+++
T Consensus 152 iG~G~IG~~~A~~l~~~-----G~-------~V~~~d~~~----~~-~-~~----~~~~----~~~l~ell~~--aDvV~ 203 (331)
T 1xdw_A 152 VGLGRIGRVAAQIFHGM-----GA-------TVIGEDVFE----IK-G-IE----DYCT----QVSLDEVLEK--SDIIT 203 (331)
T ss_dssp ECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC----CC-S-CT----TTCE----ECCHHHHHHH--CSEEE
T ss_pred ECcCHHHHHHHHHHHHC-----CC-------EEEEECCCc----cH-H-HH----hccc----cCCHHHHHhh--CCEEE
Confidence 99999999999988642 64 588888742 11 1 11 1111 2379998885 89988
Q ss_pred ecc----CCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 385 GSS----GVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 385 G~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
=.- ...++|+++.++.|. +..++.=+|.
T Consensus 204 ~~~p~t~~t~~li~~~~l~~mk---~ga~lin~sr 235 (331)
T 1xdw_A 204 IHAPYIKENGAVVTRDFLKKMK---DGAILVNCAR 235 (331)
T ss_dssp ECCCCCTTTCCSBCHHHHHTSC---TTEEEEECSC
T ss_pred EecCCchHHHHHhCHHHHhhCC---CCcEEEECCC
Confidence 641 234789999999886 5678887874
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=86.85 E-value=4 Score=42.25 Aligned_cols=175 Identities=15% Similarity=0.078 Sum_probs=102.1
Q ss_pred cCCCCeeecCCc---chhHHHHHHHHHHHHH--------------------hCCCcccceEEEeCcChHHHHHHHHHHHH
Q 008629 265 GTTHLVFNDDIQ---GTASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 265 r~~~~~FnDDiQ---GTaaV~LAgll~Alr~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~ 321 (559)
+..+.+.|---- .+|=-+++-+|+..|- .+..|.+.+|.|+|.|..|..+|+.+...
T Consensus 107 ~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG~~vA~~l~~~ 186 (351)
T 3jtm_A 107 AAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPF 186 (351)
T ss_dssp HTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHGGG
T ss_pred hcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHHHHHHHHHHHC
Confidence 345666664322 3344577778877752 25679999999999999999999988642
Q ss_pred HHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHH
Q 008629 322 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEV 397 (559)
Q Consensus 322 ~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~ev 397 (559)
|+ +++.+|+... .....+.. ......+|.|+++. .|+++=.- ..-+.|+++.
T Consensus 187 -----G~-------~V~~~dr~~~-------~~~~~~~~---g~~~~~~l~ell~~--aDvV~l~~Plt~~t~~li~~~~ 242 (351)
T 3jtm_A 187 -----GC-------NLLYHDRLQM-------APELEKET---GAKFVEDLNEMLPK--CDVIVINMPLTEKTRGMFNKEL 242 (351)
T ss_dssp -----CC-------EEEEECSSCC-------CHHHHHHH---CCEECSCHHHHGGG--CSEEEECSCCCTTTTTCBSHHH
T ss_pred -----CC-------EEEEeCCCcc-------CHHHHHhC---CCeEcCCHHHHHhc--CCEEEECCCCCHHHHHhhcHHH
Confidence 65 4777876421 01111100 01113579999986 89888432 2336899999
Q ss_pred HHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcee-CCeeeCccCccccccchhhHHH
Q 008629 398 IEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLG 470 (559)
Q Consensus 398 v~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~-~G~~~~p~Q~NN~yiFPGlglG 470 (559)
++.|. +..+|.=.|+-..--|---.+|+ .+|+.-.|.--=|.+--. ... .--+..|+.+-|=++-.
T Consensus 243 l~~mk---~gailIN~aRG~~vde~aL~~aL--~~g~i~ga~lDV~~~EP~~~~~--pL~~~~nvilTPHia~~ 309 (351)
T 3jtm_A 243 IGKLK---KGVLIVNNARGAIMERQAVVDAV--ESGHIGGYSGDVWDPQPAPKDH--PWRYMPNQAMTPHTSGT 309 (351)
T ss_dssp HHHSC---TTEEEEECSCGGGBCHHHHHHHH--HHTSEEEEEESCCSSSSCCTTC--GGGTSTTBCCCCSCGGG
T ss_pred HhcCC---CCCEEEECcCchhhCHHHHHHHH--HhCCccEEEeCCCCCCCCCCCC--hhhcCCCEEECCcCCCC
Confidence 99996 67788877774322232233444 356644333222211100 000 01134578888876543
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=86.65 E-value=0.98 Score=45.88 Aligned_cols=104 Identities=21% Similarity=0.293 Sum_probs=64.8
Q ss_pred ceEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchh-hccccCCCCCHHHHhcc
Q 008629 300 HRFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKP-WAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~-fA~~~~~~~~L~e~V~~ 377 (559)
.||+|.| +|..|..++..|+. .|+ ...++++|.+.- .....+|.+...+ -.+......++.++++.
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~-----~g~-----~~ev~l~Di~~~--~~~~~dL~~~~~~~~v~~~~~t~d~~~al~g 76 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKM-----NPL-----VSVLHLYDVVNA--PGVTADISHMDTGAVVRGFLGQQQLEAALTG 76 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHH-----CTT-----EEEEEEEESSSH--HHHHHHHHTSCSSCEEEEEESHHHHHHHHTT
T ss_pred CEEEEECCCChHHHHHHHHHHh-----CCC-----CCEEEEEeCCCc--HhHHHHhhcccccceEEEEeCCCCHHHHcCC
Confidence 5899999 79999998887653 354 256999996421 0000001110000 00000011257788886
Q ss_pred cCCcEEEeccCCCC--------------CCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGR--------------TFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g--------------~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+. ..++++++.|.+++.+.+|+--|||.
T Consensus 77 --aDvVi~~ag~~~~~g~~r~dl~~~N~~~~~~i~~~i~~~~p~~~viv~SNPv 128 (326)
T 1smk_A 77 --MDLIIVPAGVPRKPGMTRDDLFKINAGIVKTLCEGIAKCCPRAIVNLISNPV 128 (326)
T ss_dssp --CSEEEECCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred --CCEEEEcCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEECCch
Confidence 899886655442 24677888888889889999999998
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.43 E-value=0.67 Score=46.52 Aligned_cols=98 Identities=23% Similarity=0.357 Sum_probs=55.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch-hhcc----ccCCCCCHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWAH----EHEPVNNLLD 373 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~-~fA~----~~~~~~~L~e 373 (559)
+.||.|+|+|+-|..+|..|..+ | .+++++|+.. .+.+.+..... .|-. ...-..++.|
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~-----G-------~~V~~~~r~~----~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 77 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHEN-----G-------EEVILWARRK----EIVDLINVSHTSPYVEESKITVRATNDLEE 77 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSH----HHHHHHHHHSCBTTBTTCCCCSEEESCGGG
T ss_pred CCcEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEeCCH----HHHHHHHHhCCcccCCCCeeeEEEeCCHHH
Confidence 46999999999999999998763 5 3688887741 10000111000 0000 0001134555
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCC
Q 008629 374 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQ 419 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~ 419 (559)
++ ..|++| ++..+ ...+++++.++. +..+|..++|..+.
T Consensus 78 -~~--~aDvVi-l~vk~-~~~~~v~~~l~~--~~~~vv~~~nGi~~ 116 (335)
T 1z82_A 78 -IK--KEDILV-IAIPV-QYIREHLLRLPV--KPSMVLNLSKGIEI 116 (335)
T ss_dssp -CC--TTEEEE-ECSCG-GGHHHHHTTCSS--CCSEEEECCCCCCT
T ss_pred -hc--CCCEEE-EECCH-HHHHHHHHHhCc--CCCEEEEEeCCCCC
Confidence 54 367665 33322 567777777654 55678889987653
|
| >1up7_A 6-phospho-beta-glucosidase; hydrolase, family4 hydrolase, Na dependent; HET: G6P NAD; 2.4A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 PDB: 1up6_A* 1up4_A | Back alignment and structure |
|---|
Probab=86.30 E-value=0.96 Score=47.95 Aligned_cols=124 Identities=12% Similarity=0.169 Sum_probs=74.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHH-hcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc---CCCCCHHHHh
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISK-QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH---EPVNNLLDAV 375 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~-~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~---~~~~~L~e~V 375 (559)
.||.|+|||+. .+..++..+.. ..++. ...++|+|.+- +|-+.........++.. ....++.+++
T Consensus 3 ~KI~IIGaG~v---~~~~l~~~l~~~~~~l~----~~el~L~Di~~----~~~~~~~~~~~~~~~~~~~v~~t~d~~~al 71 (417)
T 1up7_A 3 MRIAVIGGGSS---YTPELVKGLLDISEDVR----IDEVIFYDIDE----EKQKIVVDFVKRLVKDRFKVLISDTFEGAV 71 (417)
T ss_dssp CEEEEETTTCT---THHHHHHHHHHHTTTSC----CCEEEEECSCH----HHHHHHHHHHHHHHTTSSEEEECSSHHHHH
T ss_pred CEEEEECCCHH---HHHHHHHHHHhcccCCC----cCEEEEEeCCH----HHHHHHHHHHHHHhhCCeEEEEeCCHHHHh
Confidence 58999999995 55555444443 23442 36799999752 22110111111111110 1125788999
Q ss_pred cccCCcEEEeccCCCC---------------CC-------------------CHHHHHHHHcCCCCcEEEecCCCCCCCC
Q 008629 376 KVIKPTILIGSSGVGR---------------TF-------------------TKEVIEAMASFNEKPLILALSNPTSQSE 421 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g---------------~F-------------------t~evv~~Ma~~~erPIIFaLSNPt~~~E 421 (559)
+. .|++|=..++|+ ++ =.++++.|.++| .-+|+-.|||. .
T Consensus 72 ~~--AD~Viitagvg~~~~~~rd~~i~~k~glvgqeT~G~GGi~~~~rni~i~~~i~~~i~~~~-~A~lin~TNPv--d- 145 (417)
T 1up7_A 72 VD--AKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTS-NATIVNFTNPS--G- 145 (417)
T ss_dssp TT--CSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECSSSH--H-
T ss_pred CC--CCEEEEcCCCCCCCccchhhhhhhhcCcccccccccchhHHhhccHHHHHHHHHHHHHHC-CEEEEEeCChH--H-
Confidence 86 999998777653 22 258899999999 99999999998 2
Q ss_pred CCHHHHhcccCCcEEEeeC
Q 008629 422 CTAEEAYTWSKGRAIFASG 440 (559)
Q Consensus 422 ctpedA~~wt~G~aifAsG 440 (559)
+..+-+++.+.-.-+|.+|
T Consensus 146 i~t~a~~k~~p~~rviG~c 164 (417)
T 1up7_A 146 HITEFVRNYLEYEKFIGLC 164 (417)
T ss_dssp HHHHHHHHTTCCSSEEECC
T ss_pred HHHHHHHHhCCCCCEEEeC
Confidence 2223344555332466654
|
| >1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A | Back alignment and structure |
|---|
Probab=86.24 E-value=0.8 Score=49.02 Aligned_cols=104 Identities=13% Similarity=0.122 Sum_probs=65.3
Q ss_pred chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHc-CCCCee--ecCCcchhHHHHHHHHHHHHHhC-------
Q 008629 225 EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYG-TTHLVF--NDDIQGTASVVLAGVVAALKLIG------- 294 (559)
Q Consensus 225 ~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr-~~~~~F--nDDiQGTaaV~LAgll~Alr~~g------- 294 (559)
-|-..+..+++.+...+ |+ |.|+-+....-.++-++|. ..+|++ |+..-+.+.....-|+..+....
T Consensus 130 ~~C~~~~~~l~~~a~~~-~~--v~~~~vd~~~~~~~~~~~~i~svPt~~i~g~~~~~G~~~~~~l~~~l~~~~~~~~~~~ 206 (521)
T 1hyu_A 130 HNCPDVVQALNLMAVLN-PR--IKHTAIDGGTFQNEITERNVMGVPAVFVNGKEFGQGRMTLTEIVAKVDTGAEKRAAEA 206 (521)
T ss_dssp SSHHHHHHHHHHHHHHC-TT--EEEEEEETTTCHHHHHHTTCCSSSEEEETTEEEEESCCCHHHHHHHHCCSSCCHHHHH
T ss_pred cCcHHHHHHHHHHHhHc-Cc--eEEEEEechhhHHHHHHhCCCccCEEEECCEEEecCCCCHHHHHHHHhhccccccccc
Confidence 34445666666666667 44 4444333334566778886 466644 66666777777777776653321
Q ss_pred -CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 -GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 -~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..-...+|+|+|+|.||+..|..+.. .|+ ++.++|++
T Consensus 207 ~~~~~~~dVvIIGgG~AGl~aA~~la~-----~G~-------~v~lie~~ 244 (521)
T 1hyu_A 207 LNKRDAYDVLIVGSGPAGAAAAVYSAR-----KGI-------RTGLMGER 244 (521)
T ss_dssp HHTSCCEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred ccccCcccEEEECCcHHHHHHHHHHHh-----CCC-------eEEEEECC
Confidence 01234679999999999999988765 364 56777753
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=86.21 E-value=0.49 Score=46.90 Aligned_cols=103 Identities=14% Similarity=0.286 Sum_probs=61.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc-hhchhhcccc--CCCCCHHHHh
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ-HFKKPWAHEH--EPVNNLLDAV 375 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~-~~k~~fA~~~--~~~~~L~e~V 375 (559)
..||.|+|||+.|..+|..|.. .|. ..+++++|++---... ..+. .+..++..+. ....+. +++
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~-----~g~-----~~~V~l~d~~~~~~~~--~~~~~~~~~~~~~~~~v~~~~~~-~~~ 73 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQ-----RGI-----AREIVLEDIAKERVEA--EVLDMQHGSSFYPTVSIDGSDDP-EIC 73 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSHHHHHH--HHHHHHHTGGGSTTCEEEEESCG-GGG
T ss_pred CCEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCChhHHHH--HHHHHHhhhhhcCCeEEEeCCCH-HHh
Confidence 3589999999999999988764 253 1479999986310000 0010 0111111110 000132 455
Q ss_pred cccCCcEEEeccCCCCCCCH----------------HHHHHHHcCCCCcEEEecCCCCC
Q 008629 376 KVIKPTILIGSSGVGRTFTK----------------EVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~Ft~----------------evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
+ ..|++|=+.+.+. .+ ++++.|+++++..+|+.++||..
T Consensus 74 ~--~aD~Vii~v~~~~--~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np~~ 128 (319)
T 1lld_A 74 R--DADMVVITAGPRQ--KPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPVD 128 (319)
T ss_dssp T--TCSEEEECCCCCC--CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHH
T ss_pred C--CCCEEEECCCCCC--CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCchH
Confidence 5 4888875554332 23 88889988888889999999984
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=86.16 E-value=7.1 Score=39.30 Aligned_cols=117 Identities=20% Similarity=0.253 Sum_probs=78.5
Q ss_pred CCCCeeecC-Ccc--hhHHHHHHHHHHHHHh-----------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHh
Q 008629 266 TTHLVFNDD-IQG--TASVVLAGVVAALKLI-----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQ 325 (559)
Q Consensus 266 ~~~~~FnDD-iQG--TaaV~LAgll~Alr~~-----------------g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~ 325 (559)
..+++.|-- ... +|=-+++.+|+..|-. +..|.+.++.|+|.|..|-.+|+.+..
T Consensus 71 ~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~----- 145 (303)
T 1qp8_A 71 PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAA----- 145 (303)
T ss_dssp TTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHH-----
T ss_pred cCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCCEEEEEccCHHHHHHHHHHHH-----
Confidence 467777643 222 2334788888876631 226889999999999999999998864
Q ss_pred cCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHH
Q 008629 326 TKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAM 401 (559)
Q Consensus 326 ~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~M 401 (559)
.|+ +++.+|+..- +. .+ ....+|.|+++. .|+++=.- ...+.|+++.++.|
T Consensus 146 ~G~-------~V~~~dr~~~---------~~---~~----~~~~~l~ell~~--aDvV~l~~P~~~~t~~~i~~~~l~~m 200 (303)
T 1qp8_A 146 LGA-------QVRGFSRTPK---------EG---PW----RFTNSLEEALRE--ARAAVCALPLNKHTRGLVKYQHLALM 200 (303)
T ss_dssp TTC-------EEEEECSSCC---------CS---SS----CCBSCSHHHHTT--CSEEEECCCCSTTTTTCBCHHHHTTS
T ss_pred CCC-------EEEEECCCcc---------cc---Cc----ccCCCHHHHHhh--CCEEEEeCcCchHHHHHhCHHHHhhC
Confidence 264 5888887521 10 01 122478888885 89887553 23457888888877
Q ss_pred HcCCCCcEEEecCC
Q 008629 402 ASFNEKPLILALSN 415 (559)
Q Consensus 402 a~~~erPIIFaLSN 415 (559)
. +..++.=.|.
T Consensus 201 k---~gailin~sr 211 (303)
T 1qp8_A 201 A---EDAVFVNVGR 211 (303)
T ss_dssp C---TTCEEEECSC
T ss_pred C---CCCEEEECCC
Confidence 5 6678887776
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.16 E-value=0.72 Score=43.67 Aligned_cols=93 Identities=13% Similarity=0.184 Sum_probs=57.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEE-EcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICL-VDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~l-vD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
.||.|+|+|..|..+|..+... |. ++.+ +|++ . +.+....+.+-. ....+..++++.
T Consensus 24 mkI~IIG~G~mG~~la~~l~~~-----g~-------~V~~v~~r~----~---~~~~~l~~~~g~--~~~~~~~~~~~~- 81 (220)
T 4huj_A 24 TTYAIIGAGAIGSALAERFTAA-----QI-------PAIIANSRG----P---ASLSSVTDRFGA--SVKAVELKDALQ- 81 (220)
T ss_dssp CCEEEEECHHHHHHHHHHHHHT-----TC-------CEEEECTTC----G---GGGHHHHHHHTT--TEEECCHHHHTT-
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------EEEEEECCC----H---HHHHHHHHHhCC--CcccChHHHHhc-
Confidence 5899999999999999988753 53 3554 5543 1 123222222210 111244566664
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
+|++| ++..+ ...+++++.++. .+..+|+-++||..
T Consensus 82 -aDvVi-lavp~-~~~~~v~~~l~~-~~~~ivi~~~~g~~ 117 (220)
T 4huj_A 82 -ADVVI-LAVPY-DSIADIVTQVSD-WGGQIVVDASNAID 117 (220)
T ss_dssp -SSEEE-EESCG-GGHHHHHTTCSC-CTTCEEEECCCCBC
T ss_pred -CCEEE-EeCCh-HHHHHHHHHhhc-cCCCEEEEcCCCCC
Confidence 78877 33333 456778877765 45669999999874
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=85.98 E-value=2.2 Score=44.07 Aligned_cols=95 Identities=11% Similarity=0.216 Sum_probs=60.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc-cCCCCCHHHHh
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE-HEPVNNLLDAV 375 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~-~~~~~~L~e~V 375 (559)
++..||.|+|.|..|..+|..|... | -+++++|+. .+ .+. .++.. .....++.|++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~-----G-------~~V~v~dr~----~~---~~~----~l~~~g~~~~~s~~e~~ 76 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKG-----G-------HECVVYDLN----VN---AVQ----ALEREGIAGARSIEEFC 76 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSC----HH---HHH----HHHTTTCBCCSSHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhC-----C-------CEEEEEeCC----HH---HHH----HHHHCCCEEeCCHHHHH
Confidence 3467999999999999999988763 5 357777763 11 111 12111 12235788888
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCC
Q 008629 376 KVI-KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNP 416 (559)
Q Consensus 376 ~~v-kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNP 416 (559)
+.. +||++| ++...+ -.+++++.+... .+.-||.-+||-
T Consensus 77 ~~a~~~DvVi-~~vp~~-~v~~vl~~l~~~l~~g~iiId~st~ 117 (358)
T 4e21_A 77 AKLVKPRVVW-LMVPAA-VVDSMLQRMTPLLAANDIVIDGGNS 117 (358)
T ss_dssp HHSCSSCEEE-ECSCGG-GHHHHHHHHGGGCCTTCEEEECSSC
T ss_pred hcCCCCCEEE-EeCCHH-HHHHHHHHHHhhCCCCCEEEeCCCC
Confidence 764 568877 333333 678888887654 356678777773
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=85.90 E-value=3 Score=43.18 Aligned_cols=144 Identities=13% Similarity=0.161 Sum_probs=89.0
Q ss_pred eeeccCCCCcH-HHHHHHHcCCCCeeecCC---cchhHHHHHHHHHHHHH--------------------hCCCcccceE
Q 008629 247 IQFEDFANHNA-FELLAKYGTTHLVFNDDI---QGTASVVLAGVVAALKL--------------------IGGTLAEHRF 302 (559)
Q Consensus 247 Iq~EDf~~~~A-f~lL~ryr~~~~~FnDDi---QGTaaV~LAgll~Alr~--------------------~g~~l~d~ri 302 (559)
|+.-..+..|- .+.+.+.+..+.+.|--- +.+|=-+++.+|+..|- .+..|.+.+|
T Consensus 88 I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tv 167 (364)
T 2j6i_A 88 VVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTI 167 (364)
T ss_dssp EEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEE
T ss_pred EEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEE
Confidence 66655555553 222233222566666432 23344468888877662 3668999999
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcE
Q 008629 303 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 382 (559)
Q Consensus 303 v~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtv 382 (559)
.|+|.|..|..+|+.+.. .|+ ++++.+|+... .....+ .+ ......+|.|+++. .|+
T Consensus 168 gIIG~G~IG~~vA~~l~~-----~G~------~~V~~~d~~~~-------~~~~~~-~~--g~~~~~~l~ell~~--aDv 224 (364)
T 2j6i_A 168 ATIGAGRIGYRVLERLVP-----FNP------KELLYYDYQAL-------PKDAEE-KV--GARRVENIEELVAQ--ADI 224 (364)
T ss_dssp EEECCSHHHHHHHHHHGG-----GCC------SEEEEECSSCC-------CHHHHH-HT--TEEECSSHHHHHHT--CSE
T ss_pred EEECcCHHHHHHHHHHHh-----CCC------cEEEEECCCcc-------chhHHH-hc--CcEecCCHHHHHhc--CCE
Confidence 999999999999998864 264 23888876411 111111 11 00112479998874 899
Q ss_pred EEeccCC----CCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 383 LIGSSGV----GRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 383 LIG~S~~----~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
++=.--. .++|+++.++.|. +.-+|.-.|+-
T Consensus 225 V~l~~P~t~~t~~li~~~~l~~mk---~ga~lIn~arG 259 (364)
T 2j6i_A 225 VTVNAPLHAGTKGLINKELLSKFK---KGAWLVNTARG 259 (364)
T ss_dssp EEECCCCSTTTTTCBCHHHHTTSC---TTEEEEECSCG
T ss_pred EEECCCCChHHHHHhCHHHHhhCC---CCCEEEECCCC
Confidence 8854322 2688998888886 66788878773
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=85.85 E-value=0.59 Score=47.20 Aligned_cols=104 Identities=20% Similarity=0.246 Sum_probs=64.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~v 378 (559)
||.|+|||..|.++|-.|... |+ ...+.|+|.+-=..++-.-+|.+...+|-... ....+ .++++.
T Consensus 2 kI~ViGaG~vG~~la~~l~~~-----~~-----~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~- 69 (294)
T 1oju_A 2 KLGFVGAGRVGSTSAFTCLLN-----LD-----VDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKG- 69 (294)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC-----CSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTT-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCC-
Confidence 799999999999999887653 54 14799999752111100001222211121110 00134 677875
Q ss_pred CCcEEEeccCCC---CC-----C------CHHHHHHHHcCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVG---RT-----F------TKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~---g~-----F------t~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- | -+++++.|.++++.-+|+-.|||.
T Consensus 70 -aDiVViaag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvsNPv 121 (294)
T 1oju_A 70 -SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121 (294)
T ss_dssp -CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred -CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeCCcc
Confidence 88887554443 32 1 256778888999999999999998
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=85.82 E-value=0.67 Score=45.86 Aligned_cols=49 Identities=22% Similarity=0.261 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 282 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 282 ~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
...|++.+++..+.++++.+++|+|||.+|.++|..|.. .| +++++|++
T Consensus 111 d~~G~~~~L~~~~~~l~~k~vlV~GaGgiG~aia~~L~~-----~G--------~V~v~~r~ 159 (287)
T 1nvt_A 111 DGIGARMALEEEIGRVKDKNIVIYGAGGAARAVAFELAK-----DN--------NIIIANRT 159 (287)
T ss_dssp HHHHHHHHHHHHHCCCCSCEEEEECCSHHHHHHHHHHTS-----SS--------EEEEECSS
T ss_pred CHHHHHHHHHHhCCCcCCCEEEEECchHHHHHHHHHHHH-----CC--------CEEEEECC
Confidence 678999999988889999999999998666666655543 23 68888774
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=85.79 E-value=0.62 Score=51.85 Aligned_cols=38 Identities=26% Similarity=0.439 Sum_probs=33.9
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|++.||+++|||..|..||..|+.+ |+ ++|.++|.+
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~a-----GV------G~ItLvD~D 360 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAW-----GV------RKITFVDNG 360 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTT-----TC------CEEEEECCS
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEECCC
Confidence 478899999999999999999998864 86 799999987
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=85.77 E-value=5.4 Score=40.27 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=78.5
Q ss_pred CCCCeeecCCc---chhHHHHHHHHHHHHH---------------------hCCCcccceEEEeCcChHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDIQ---GTASVVLAGVVAALKL---------------------IGGTLAEHRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 266 ~~~~~FnDDiQ---GTaaV~LAgll~Alr~---------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~ 321 (559)
..+.+.|---- .+|=-+++.+|+..|- .|..+.+.+|.|+|.|..|..+|+.+..
T Consensus 87 ~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~A~~l~~- 165 (311)
T 2cuk_A 87 RGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALA- 165 (311)
T ss_dssp TTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHH-
T ss_pred CCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHHHHHHHH-
Confidence 34555554322 2334467777777652 1457889999999999999999998864
Q ss_pred HHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHH
Q 008629 322 ISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEV 397 (559)
Q Consensus 322 ~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~ev 397 (559)
.|+ +++.+|+.. .. .. + ...+|.|+++. .|+++=.- ...+.++++.
T Consensus 166 ----~G~-------~V~~~d~~~----~~---~~------~----~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~ 215 (311)
T 2cuk_A 166 ----FGM-------RVVYHARTP----KP---LP------Y----PFLSLEELLKE--ADVVSLHTPLTPETHRLLNRER 215 (311)
T ss_dssp ----TTC-------EEEEECSSC----CS---SS------S----CBCCHHHHHHH--CSEEEECCCCCTTTTTCBCHHH
T ss_pred ----CCC-------EEEEECCCC----cc---cc------c----ccCCHHHHHhh--CCEEEEeCCCChHHHhhcCHHH
Confidence 264 588888741 11 11 1 12478898886 89888652 2246788888
Q ss_pred HHHHHcCCCCcEEEecCCC
Q 008629 398 IEAMASFNEKPLILALSNP 416 (559)
Q Consensus 398 v~~Ma~~~erPIIFaLSNP 416 (559)
++.|. +..++.=.|.-
T Consensus 216 l~~mk---~ga~lin~srg 231 (311)
T 2cuk_A 216 LFAMK---RGAILLNTARG 231 (311)
T ss_dssp HTTSC---TTCEEEECSCG
T ss_pred HhhCC---CCcEEEECCCC
Confidence 87775 67788888873
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=85.76 E-value=9.3 Score=40.16 Aligned_cols=191 Identities=16% Similarity=0.145 Sum_probs=108.8
Q ss_pred cCCCCeeecCCc---chhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 008629 265 GTTHLVFNDDIQ---GTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 323 (559)
Q Consensus 265 r~~~~~FnDDiQ---GTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~ 323 (559)
+..+++||---- .+|=-++|.+|+..|- .|..|.+.++.|+|-|..|..+|+.+...
T Consensus 90 ~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA~~l~~~-- 167 (404)
T 1sc6_A 90 KRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL-- 167 (404)
T ss_dssp HTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHT--
T ss_pred hCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHHHHHHHHC--
Confidence 356778875433 3455578888888763 25679999999999999999999988652
Q ss_pred HhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHH
Q 008629 324 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIE 399 (559)
Q Consensus 324 ~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~ 399 (559)
|+ +++.+|+.. . ..+. -+ ....+|.|+++. .|+++=.- ..-+.|+++.++
T Consensus 168 ---G~-------~V~~~d~~~----~--~~~~-----~~---~~~~~l~ell~~--aDvV~l~~P~t~~t~~li~~~~l~ 221 (404)
T 1sc6_A 168 ---GM-------YVYFYDIEN----K--LPLG-----NA---TQVQHLSDLLNM--SDVVSLHVPENPSTKNMMGAKEIS 221 (404)
T ss_dssp ---TC-------EEEEECSSC----C--CCCT-----TC---EECSCHHHHHHH--CSEEEECCCSSTTTTTCBCHHHHH
T ss_pred ---CC-------EEEEEcCCc----h--hccC-----Cc---eecCCHHHHHhc--CCEEEEccCCChHHHHHhhHHHHh
Confidence 65 588888742 1 1010 01 112478898886 88887542 223688999998
Q ss_pred HHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEE------EeeCCCCCCceeCCeeeCccCccccccchhhHHHHHH
Q 008629 400 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAI------FASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVI 473 (559)
Q Consensus 400 ~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~ai------fAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~ 473 (559)
.|. +.-++.=.|.=.---|---.+|+ ..|+.- |.. -|.++-+. ....-=+..|+.+-|=+|-...-
T Consensus 222 ~mk---~ga~lIN~aRg~~vd~~aL~~aL--~~g~i~gA~lDVf~~-EP~~~~~~--~~~pL~~~~nvilTPHi~~~T~e 293 (404)
T 1sc6_A 222 LMK---PGSLLINASRGTVVDIPALADAL--ASKHLAGAAIDVFPT-EPATNSDP--FTSPLAEFDNVLLTPHIGGSTQE 293 (404)
T ss_dssp HSC---TTEEEEECSCSSSBCHHHHHHHH--HTTSEEEEEEEC----------CT--TTGGGTTCTTEEEECCCSCCSHH
T ss_pred hcC---CCeEEEECCCChHHhHHHHHHHH--HcCCccEEEEeecCC-CCCCcccc--ccchhhcCCCEEECCCCCCCcHH
Confidence 886 56788877753211111112333 345532 221 12110000 00001135688999977633222
Q ss_pred hCCcccCHHHHHHHHHHHHhccC
Q 008629 474 SGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 474 ~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
+ -+.|...+++.|.....
T Consensus 294 a-----~~~~~~~~~~nl~~~l~ 311 (404)
T 1sc6_A 294 A-----QENIGLEVAGKLIKYSD 311 (404)
T ss_dssp H-----HHHHHHHHHHHHHHHHH
T ss_pred H-----HHHHHHHHHHHHHHHHc
Confidence 2 13455556666666554
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=85.71 E-value=1.1 Score=44.73 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=36.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|+..+++..|.. ...+++|+|||.+|-+++..|.. .|. ++|+++++.
T Consensus 105 ~G~~~~l~~~~~~-~~~~vlvlGaGgaarav~~~L~~-----~G~------~~i~v~nRt 152 (271)
T 1npy_A 105 IAIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKN-----SGF------EKLKIYARN 152 (271)
T ss_dssp HHHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHH-----TTC------CCEEEECSC
T ss_pred HHHHHHHHHhCCC-CCCEEEEECCcHHHHHHHHHHHH-----CCC------CEEEEEeCC
Confidence 4566666665654 56899999999999999888765 365 679988774
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=85.64 E-value=0.55 Score=45.87 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=32.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.||+|+|+|..|..+|+.|+.+ |+ ++|.++|.+
T Consensus 28 ~l~~~~VlVvG~Gg~G~~va~~La~~-----Gv------~~i~lvD~d 64 (249)
T 1jw9_B 28 ALKDSRVLIVGLGGLGCAASQYLASA-----GV------GNLTLLDFD 64 (249)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHhCCeEEEEeeCHHHHHHHHHHHHc-----CC------CeEEEEcCC
Confidence 45678999999999999999999875 76 689999997
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=85.61 E-value=1.5 Score=42.04 Aligned_cols=98 Identities=15% Similarity=0.234 Sum_probs=59.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||.|+|+|..|..+|..|... |.. ...+++++|++ . +.+...++.+ ......++.|+++.
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~-----g~~---~~~~V~~~~r~----~---~~~~~~~~~~--g~~~~~~~~e~~~~-- 63 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINK-----NIV---SSNQIICSDLN----T---ANLKNASEKY--GLTTTTDNNEVAKN-- 63 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHT-----TSS---CGGGEEEECSC----H---HHHHHHHHHH--CCEECSCHHHHHHH--
T ss_pred CeEEEECccHHHHHHHHHHHhC-----CCC---CCCeEEEEeCC----H---HHHHHHHHHh--CCEEeCChHHHHHh--
Confidence 4899999999999999988763 531 12478888873 1 1122222211 11123578898886
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 418 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 418 (559)
+|++| ++..+ .-.+++++.+..+. +..+|...++-.+
T Consensus 64 aDvVi-lav~~-~~~~~v~~~l~~~l~~~~~vvs~~~gi~ 101 (247)
T 3gt0_A 64 ADILI-LSIKP-DLYASIINEIKEIIKNDAIIVTIAAGKS 101 (247)
T ss_dssp CSEEE-ECSCT-TTHHHHC---CCSSCTTCEEEECSCCSC
T ss_pred CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEecCCCC
Confidence 88887 33333 45678888776543 4557777777664
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=85.47 E-value=1.1 Score=45.14 Aligned_cols=104 Identities=20% Similarity=0.288 Sum_probs=61.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 377 (559)
.||.|+|||..|.++|-.+.. .|+ . + ++|+|.+-=-.+....+|.+...+..... ....++ ++++.
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~-----~g~----~-~-v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~ 70 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAA-----KEL----G-D-IVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTAN 70 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC----S-E-EEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CCC----C-e-EEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCC
Confidence 489999999999999987754 364 1 3 99999751000000001211110010110 001456 67775
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+.. .-+++.+.+.++++.-+|+-.|||.
T Consensus 71 --aD~Vi~a~g~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~vi~~tNPv 122 (309)
T 1ur5_A 71 --SDVIVVTSGAPRKPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVNNPL 122 (309)
T ss_dssp --CSEEEECCCC--------CHHHHHHHHHHHHHHHHHGGGCTTCEEEECCSSH
T ss_pred --CCEEEEcCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEcCCch
Confidence 8998866544421 1246788888889888888789998
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=85.46 E-value=1.2 Score=44.54 Aligned_cols=98 Identities=15% Similarity=0.187 Sum_probs=58.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC--------ccccCCcCCCchhchhhccccCCCCCH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG--------LIVSSRKDSLQHFKKPWAHEHEPVNNL 371 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G--------Li~~~R~~~l~~~k~~fA~~~~~~~~L 371 (559)
.||.|+|+|+-|..+|..|... | .+++++|+.- +...++ ....++ + ++..-..++
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~-----g-------~~V~~~~r~~~~~i~~~Gl~~~~~--~~g~~~--~-~~~~~~~~~ 65 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKT-----G-------HCVSVVSRSDYETVKAKGIRIRSA--TLGDYT--F-RPAAVVRSA 65 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHT-----T-------CEEEEECSTTHHHHHHHCEEEEET--TTCCEE--E-CCSCEESCG
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEeCChHHHHHhCCcEEeec--CCCcEE--E-eeeeeECCH
Confidence 4899999999999999888653 5 3688888753 111110 000010 0 000111345
Q ss_pred HHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 418 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 418 (559)
.++.+ .+|++| ++... ..++++++.++.+. +..+|+.+.|--.
T Consensus 66 ~~~~~--~~DlVi-lavK~-~~~~~~l~~l~~~l~~~t~Iv~~~nGi~ 109 (320)
T 3i83_A 66 AELET--KPDCTL-LCIKV-VEGADRVGLLRDAVAPDTGIVLISNGID 109 (320)
T ss_dssp GGCSS--CCSEEE-ECCCC-CTTCCHHHHHTTSCCTTCEEEEECSSSS
T ss_pred HHcCC--CCCEEE-EecCC-CChHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 55543 478877 55444 34678999987643 4567888999764
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.20 E-value=4.7 Score=41.09 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=60.5
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
..|.+.+|.|+|.|..|..+|+.+.. .|. +++.+|+.. .. ...+..-+. ..+|.++
T Consensus 142 ~~l~g~~vgIIG~G~iG~~vA~~l~~-----~G~-------~V~~~d~~~----~~----~~~~~~g~~----~~~l~e~ 197 (333)
T 2d0i_A 142 ESLYGKKVGILGMGAIGKAIARRLIP-----FGV-------KLYYWSRHR----KV----NVEKELKAR----YMDIDEL 197 (333)
T ss_dssp CCSTTCEEEEECCSHHHHHHHHHHGG-----GTC-------EEEEECSSC----CH----HHHHHHTEE----ECCHHHH
T ss_pred CCCCcCEEEEEccCHHHHHHHHHHHH-----CCC-------EEEEECCCc----ch----hhhhhcCce----ecCHHHH
Confidence 67999999999999999999998754 363 588888741 10 111100011 1378888
Q ss_pred hcccCCcEEEeccCC----CCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 375 VKVIKPTILIGSSGV----GRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 375 V~~vkPtvLIG~S~~----~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
++. .|+++=.-.. .+.++++.++.|. +. ++.-.|.
T Consensus 198 l~~--aDiVil~vp~~~~t~~~i~~~~~~~mk---~g-ilin~sr 236 (333)
T 2d0i_A 198 LEK--SDIVILALPLTRDTYHIINEERVKKLE---GK-YLVNIGR 236 (333)
T ss_dssp HHH--CSEEEECCCCCTTTTTSBCHHHHHHTB---TC-EEEECSC
T ss_pred Hhh--CCEEEEcCCCChHHHHHhCHHHHhhCC---CC-EEEECCC
Confidence 875 8988744321 3578888888885 45 7766664
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=85.19 E-value=0.4 Score=48.58 Aligned_cols=105 Identities=18% Similarity=0.298 Sum_probs=62.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||.|+|||+.|..++-+|+. .++ -..++|+|.+-=-.++...+|.+. .+|.++..-..+-.++++.
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~-----~~~-----~~el~L~Di~~~k~~g~a~dl~~~-~~~~~~~~v~~~~~~a~~~-- 67 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALAL-----LGV-----AREVVLVDLDRKLAQAHAEDILHA-TPFAHPVWVWAGSYGDLEG-- 67 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSHHHHHHHHHHHHTT-GGGSCCCEEEECCGGGGTT--
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC-----CCEEEEEeCChhHHHHHHHHHHHh-HhhcCCeEEEECCHHHhCC--
Confidence 389999999999998877654 244 257999998520000000012211 1222110000122566765
Q ss_pred CcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 380 PTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- .-+++++.|.+++..-+|+-.|||.
T Consensus 68 aD~Vii~ag~~~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 119 (310)
T 2xxj_A 68 ARAVVLAAGVAQRPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVATNPV 119 (310)
T ss_dssp EEEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred CCEEEECCCCCCCCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEecCch
Confidence 88888554444 32 1245777788889999999999998
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=85.13 E-value=1.1 Score=45.83 Aligned_cols=106 Identities=17% Similarity=0.323 Sum_probs=64.5
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC---CCHHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV---NNLLD 373 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~---~~L~e 373 (559)
++..||.|+|||..|.++|..|.. .|+ + .+.|+|.+-=..++-..+|.+. ..|....... .+. +
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~-----~~~----~--~v~L~Di~~~~~~g~~~dl~~~-~~~~~~~~~v~~t~d~-~ 71 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGL-----KEL----G--DVVLFDIAEGTPQGKGLDIAES-SPVDGFDAKFTGANDY-A 71 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHH-----TTC----C--EEEEECSSSSHHHHHHHHHHHH-HHHHTCCCCEEEESSG-G
T ss_pred CcCCEEEEECCCHHHHHHHHHHHh-----CCC----C--eEEEEeCCchhHHHHHHHHhch-hhhcCCCCEEEEeCCH-H
Confidence 456799999999999999988765 365 2 5999997521100000012221 1122111111 344 7
Q ss_pred HhcccCCcEEEeccCCC---CC-----C------CHHHHHHHHcCCCCcEEEecCCCC
Q 008629 374 AVKVIKPTILIGSSGVG---RT-----F------TKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~---g~-----F------t~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+++. .|++|=+.+.+ |. | =+++++.|.++++.-+|+-.|||.
T Consensus 72 a~~~--aDiVIiaag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvtNPv 127 (324)
T 3gvi_A 72 AIEG--ADVVIVTAGVPRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICITNPL 127 (324)
T ss_dssp GGTT--CSEEEECCSCCCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred HHCC--CCEEEEccCcCCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecCCCc
Confidence 7875 89887554433 32 1 256777888899999999999998
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.96 E-value=1.4 Score=47.62 Aligned_cols=98 Identities=13% Similarity=0.181 Sum_probs=58.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhch-hhc-cccCCCCCHHHHhcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKK-PWA-HEHEPVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~-~fA-~~~~~~~~L~e~V~~ 377 (559)
.+|.|+|+|..|.++|..|... |. +++++|+. .+ .+..... ... .......++.|+++.
T Consensus 11 ~~IgvIGlG~MG~~lA~~La~~-----G~-------~V~v~dr~----~~---~~~~l~~~~~~~~gi~~~~s~~e~v~~ 71 (497)
T 2p4q_A 11 ADFGLIGLAVMGQNLILNAADH-----GF-------TVCAYNRT----QS---KVDHFLANEAKGKSIIGATSIEDFISK 71 (497)
T ss_dssp CSEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSS----SH---HHHHHHHTTTTTSSEECCSSHHHHHHT
T ss_pred CCEEEEeeHHHHHHHHHHHHHC-----CC-------EEEEEeCC----HH---HHHHHHcccccCCCeEEeCCHHHHHhc
Confidence 4899999999999999998763 64 57778764 11 1111111 000 001123568887764
Q ss_pred c-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 378 I-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 378 v-kPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
. +||++| ++-..+...+++++.+..+. +..||.-+||-.
T Consensus 72 l~~aDvVi-l~Vp~~~~v~~vl~~l~~~l~~g~iIId~s~~~ 112 (497)
T 2p4q_A 72 LKRPRKVM-LLVKAGAPVDALINQIVPLLEKGDIIIDGGNSH 112 (497)
T ss_dssp SCSSCEEE-ECCCSSHHHHHHHHHHGGGCCTTCEEEECSCCC
T ss_pred CCCCCEEE-EEcCChHHHHHHHHHHHHhCCCCCEEEECCCCC
Confidence 3 377766 44434445677777776543 345777788743
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=84.83 E-value=5.2 Score=41.24 Aligned_cols=131 Identities=15% Similarity=0.180 Sum_probs=76.1
Q ss_pred CCCCeeecCC---cchhHHHHHHHHHHHHH--------------------hCCCcccceEEEeCcChHHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDI---QGTASVVLAGVVAALKL--------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEI 322 (559)
Q Consensus 266 ~~~~~FnDDi---QGTaaV~LAgll~Alr~--------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~ 322 (559)
..+++.|--- ..+|=-+++-+|+..|- .|..|.+.+|.|+|.|..|..+|+.+..
T Consensus 115 ~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~~vA~~l~~-- 192 (340)
T 4dgs_A 115 RNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEA-- 192 (340)
T ss_dssp TTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHHHHHHHHHT--
T ss_pred CCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHHHHHHHHHH--
Confidence 3455555322 12444567777777652 2467899999999999999999998864
Q ss_pred HHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHH
Q 008629 323 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 398 (559)
Q Consensus 323 ~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv 398 (559)
.|+ +++.+|+.. .+. . .+. ...+|.|+++. .|+++=.-- .-+.++++.+
T Consensus 193 ---~G~-------~V~~~dr~~----~~~--~-----~~~----~~~sl~ell~~--aDvVil~vP~t~~t~~li~~~~l 245 (340)
T 4dgs_A 193 ---FGM-------SVRYWNRST----LSG--V-----DWI----AHQSPVDLARD--SDVLAVCVAASAATQNIVDASLL 245 (340)
T ss_dssp ---TTC-------EEEEECSSC----CTT--S-----CCE----ECSSHHHHHHT--CSEEEECC----------CHHHH
T ss_pred ---CCC-------EEEEEcCCc----ccc--c-----Cce----ecCCHHHHHhc--CCEEEEeCCCCHHHHHHhhHHHH
Confidence 365 578788641 110 1 111 12579999986 898884422 2367889999
Q ss_pred HHHHcCCCCcEEEecCCCCCCCCCCHHHHh
Q 008629 399 EAMASFNEKPLILALSNPTSQSECTAEEAY 428 (559)
Q Consensus 399 ~~Ma~~~erPIIFaLSNPt~~~EctpedA~ 428 (559)
+.|. +.-++.=.|.-..--|-.-.+|+
T Consensus 246 ~~mk---~gailIN~aRG~vvde~aL~~aL 272 (340)
T 4dgs_A 246 QALG---PEGIVVNVARGNVVDEDALIEAL 272 (340)
T ss_dssp HHTT---TTCEEEECSCC------------
T ss_pred hcCC---CCCEEEECCCCcccCHHHHHHHH
Confidence 9886 66788878775433343344444
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=84.61 E-value=1.3 Score=45.51 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=26.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-.||.|+|||..|.|||..++.+ |+ ++.++|.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~-----G~-------~V~l~D~~ 38 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASG-----GF-------RVKLYDIE 38 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSC
T ss_pred CCeEEEECCcHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 46899999999999999888763 75 57788753
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=84.57 E-value=2.4 Score=41.76 Aligned_cols=94 Identities=13% Similarity=0.141 Sum_probs=56.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc--cCccccCCcCCCchhchhhc--------cccCCCC-
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KGLIVSSRKDSLQHFKKPWA--------HEHEPVN- 369 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~--~GLi~~~R~~~l~~~k~~fA--------~~~~~~~- 369 (559)
||.|+|+|..|..+|..|... | .+++++|+ +.-- ++..++... .......
T Consensus 2 ~I~iiG~G~mG~~~a~~L~~~-----g-------~~V~~~~r~~~~~~-------~~~~~~~~~~~~~g~~~~~~~~~~~ 62 (335)
T 1txg_A 2 IVSILGAGAMGSALSVPLVDN-----G-------NEVRIWGTEFDTEI-------LKSISAGREHPRLGVKLNGVEIFWP 62 (335)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C-------CEEEEECCGGGHHH-------HHHHHTTCCBTTTTBCCCSEEEECG
T ss_pred EEEEECcCHHHHHHHHHHHhC-----C-------CeEEEEEccCCHHH-------HHHHHHhCcCcccCccccceEEecH
Confidence 799999999999999988753 5 36888887 3110 111110000 0000112
Q ss_pred -CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 370 -NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 370 -~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++.|+++. +|++|= +..+ -..+++++.++...+..+|..++|-.
T Consensus 63 ~~~~~~~~~--~D~vi~-~v~~-~~~~~v~~~i~~l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 63 EQLEKCLEN--AEVVLL-GVST-DGVLPVMSRILPYLKDQYIVLISKGL 107 (335)
T ss_dssp GGHHHHHTT--CSEEEE-CSCG-GGHHHHHHHHTTTCCSCEEEECCCSE
T ss_pred HhHHHHHhc--CCEEEE-cCCh-HHHHHHHHHHhcCCCCCEEEEEcCcC
Confidence 57777764 787773 3323 25788888876533456788888865
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=84.39 E-value=3.3 Score=43.20 Aligned_cols=161 Identities=14% Similarity=0.064 Sum_probs=91.5
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.+.++.|+|.|..|-.+|+.+.. .|+ +++.+|+.. . .......-+ ...+|.|
T Consensus 171 ~~~l~gktvGIIGlG~IG~~vA~~l~~-----fG~-------~V~~~d~~~----~----~~~~~~~g~----~~~~l~e 226 (365)
T 4hy3_A 171 ARLIAGSEIGIVGFGDLGKALRRVLSG-----FRA-------RIRVFDPWL----P----RSMLEENGV----EPASLED 226 (365)
T ss_dssp CCCSSSSEEEEECCSHHHHHHHHHHTT-----SCC-------EEEEECSSS----C----HHHHHHTTC----EECCHHH
T ss_pred ccccCCCEEEEecCCcccHHHHHhhhh-----CCC-------EEEEECCCC----C----HHHHhhcCe----eeCCHHH
Confidence 356889999999999999999998753 364 577777641 0 011111111 1247999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeC
Q 008629 374 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYN 449 (559)
Q Consensus 374 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~ 449 (559)
+++. .|+++=. ...-+.|+++.++.|. +.-|+.=.|.-..--|---.+|+ ..|+.- | |- +|. .
T Consensus 227 ll~~--aDvV~l~~Plt~~T~~li~~~~l~~mk---~gailIN~aRG~~vde~aL~~aL--~~g~i~-a-aL---DV~-~ 293 (365)
T 4hy3_A 227 VLTK--SDFIFVVAAVTSENKRFLGAEAFSSMR---RGAAFILLSRADVVDFDALMAAV--SSGHIV-A-AS---DVY-P 293 (365)
T ss_dssp HHHS--CSEEEECSCSSCC---CCCHHHHHTSC---TTCEEEECSCGGGSCHHHHHHHH--HTTSSE-E-EE---SCC-S
T ss_pred HHhc--CCEEEEcCcCCHHHHhhcCHHHHhcCC---CCcEEEECcCCchhCHHHHHHHH--HcCCce-E-Ee---eCC-C
Confidence 9985 8998843 2334689999999996 67788877764322222222333 356643 3 31 111 0
Q ss_pred CeeeC----ccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 008629 450 GKVFV----PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 450 G~~~~----p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
..... -=+..|+.+-|=+|-....+ .+.|...+++-|.....
T Consensus 294 ~EPl~~~~pL~~~~nvilTPHia~~t~e~-----~~~~~~~~~~ni~~~~~ 339 (365)
T 4hy3_A 294 EEPLPLDHPVRSLKGFIRSAHRAGALDSA-----FKKMGDMVLEDMDLMDR 339 (365)
T ss_dssp SSSCCTTCGGGTCTTEEECCSCSSCCHHH-----HHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCChhhcCCCEEECCccccCHHHH-----HHHHHHHHHHHHHHHHc
Confidence 01100 12456888888766432221 24555666666666554
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=84.27 E-value=11 Score=38.95 Aligned_cols=121 Identities=14% Similarity=0.204 Sum_probs=81.3
Q ss_pred CCCCeeecCCc---chhHHHHHHHHHHHHH----------h----------CCCcccceEEEeCcChHHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDIQ---GTASVVLAGVVAALKL----------I----------GGTLAEHRFLFLGAGEAGTGIAELIALEI 322 (559)
Q Consensus 266 ~~~~~FnDDiQ---GTaaV~LAgll~Alr~----------~----------g~~l~d~riv~~GAGsAgiGia~ll~~~~ 322 (559)
..+++.|---- .+|=-+++-+|+..|- . |..|.+.+|.|+|.|..|-.+|+.+...
T Consensus 92 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG~~vA~~l~~~- 170 (343)
T 2yq5_A 92 YNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIGSAVAEIFSAM- 170 (343)
T ss_dssp --CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHT-
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHHHHHHHHHhhC-
Confidence 35777775333 3444568888877651 2 3468899999999999999999988643
Q ss_pred HHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHH
Q 008629 323 SKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVI 398 (559)
Q Consensus 323 ~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv 398 (559)
|+ +++.+|+.. . .... ..+. ..+|.|+++. .|+++=.-- .-+.|+++.+
T Consensus 171 ----G~-------~V~~~d~~~----~--~~~~----~~~~----~~~l~ell~~--aDvV~l~~Plt~~t~~li~~~~l 223 (343)
T 2yq5_A 171 ----GA-------KVIAYDVAY----N--PEFE----PFLT----YTDFDTVLKE--ADIVSLHTPLFPSTENMIGEKQL 223 (343)
T ss_dssp ----TC-------EEEEECSSC----C--GGGT----TTCE----ECCHHHHHHH--CSEEEECCCCCTTTTTCBCHHHH
T ss_pred ----CC-------EEEEECCCh----h--hhhh----cccc----ccCHHHHHhc--CCEEEEcCCCCHHHHHHhhHHHH
Confidence 65 688888752 1 1011 1111 1379999986 899885432 2478999999
Q ss_pred HHHHcCCCCcEEEecCCCC
Q 008629 399 EAMASFNEKPLILALSNPT 417 (559)
Q Consensus 399 ~~Ma~~~erPIIFaLSNPt 417 (559)
+.|. +..++.=.|.-.
T Consensus 224 ~~mk---~gailIN~aRg~ 239 (343)
T 2yq5_A 224 KEMK---KSAYLINCARGE 239 (343)
T ss_dssp HHSC---TTCEEEECSCGG
T ss_pred hhCC---CCcEEEECCCCh
Confidence 9996 677888777633
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=83.62 E-value=0.65 Score=47.43 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=64.0
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC--CCHHHHh
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAV 375 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~--~~L~e~V 375 (559)
+..||.|+|||..|.++|..|.. .|+ + .+.++|.+-=..++-..+|.+.. .+....... .+-.+++
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~-----~~~----~--~v~l~Di~~~~~~g~a~dL~~~~-~~~~~~~~v~~t~d~~a~ 71 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALI-----KQL----G--DVVLFDIAQGMPNGKALDLLQTC-PIEGVDFKVRGTNDYKDL 71 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----TTC----C--EEEEECSSSSHHHHHHHHHHTTH-HHHTCCCCEEEESCGGGG
T ss_pred CCCEEEEECCCHHHHHHHHHHHh-----CCC----c--eEEEEeCChHHHHHHHHHHHhhh-hhcCCCcEEEEcCCHHHH
Confidence 45799999999999999988765 365 2 69999985210000000122111 111111111 1224677
Q ss_pred cccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 376 KVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+. .|++|=+.+.+ |. .-+++++.+.++++.-+|+-.|||.
T Consensus 72 ~~--aDvVIi~ag~p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 125 (321)
T 3p7m_A 72 EN--SDVVIVTAGVPRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICITNPL 125 (321)
T ss_dssp TT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred CC--CCEEEEcCCcCCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEecCch
Confidence 75 89887555443 31 1256778888899888999999997
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=83.41 E-value=2.6 Score=39.67 Aligned_cols=80 Identities=16% Similarity=0.221 Sum_probs=49.3
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHH
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDA 374 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~ 374 (559)
..+...||.|+|+|..|..+|..+... | .+++++|+. .. +
T Consensus 15 ~~~~~~~I~iiG~G~mG~~la~~l~~~-----g-------~~V~~~~~~--------~~--------------------~ 54 (209)
T 2raf_A 15 LYFQGMEITIFGKGNMGQAIGHNFEIA-----G-------HEVTYYGSK--------DQ--------------------A 54 (209)
T ss_dssp -----CEEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECTT--------CC--------------------C
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEcCC--------HH--------------------H
Confidence 346677999999999999999988653 5 368877753 11 2
Q ss_pred hcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC
Q 008629 375 VKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS 418 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~ 418 (559)
++ ++|++|= +.. ....+++++.+....+..+|.-+||+..
T Consensus 55 ~~--~aD~vi~-av~-~~~~~~v~~~l~~~~~~~~vi~~~~g~~ 94 (209)
T 2raf_A 55 TT--LGEIVIM-AVP-YPALAALAKQYATQLKGKIVVDITNPLN 94 (209)
T ss_dssp SS--CCSEEEE-CSC-HHHHHHHHHHTHHHHTTSEEEECCCCBC
T ss_pred hc--cCCEEEE-cCC-cHHHHHHHHHHHHhcCCCEEEEECCCCC
Confidence 22 3666652 222 2345677777654333678888999653
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=83.40 E-value=0.99 Score=45.60 Aligned_cols=99 Identities=17% Similarity=0.392 Sum_probs=61.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhcccc--CCCCCHHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH--EPVNNLLDA 374 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~--~~~~~L~e~ 374 (559)
||.|+|||..|.++|-.++.. |+ ..++|+|.+ .++-+ +|.+....+.... ....+. ++
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~-----~l------~el~L~Di~----~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a 64 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMR-----GY------DDLLLIART----PGKPQGEALDLAHAAAELGVDIRISGSNSY-ED 64 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHH-----TC------SCEEEECSS----TTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GG
T ss_pred CEEEECcCHHHHHHHHHHHhC-----CC------CEEEEEcCC----hhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HH
Confidence 689999999999999776542 54 369999985 22211 1211110111110 001345 66
Q ss_pred hcccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++. .|++|=+.+.+.. .-+++++.|.++++.-+|+-.|||.
T Consensus 65 ~~~--aD~Vi~~ag~~~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~tNPv 119 (308)
T 2d4a_B 65 MRG--SDIVLVTAGIGRKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITTNPV 119 (308)
T ss_dssp GTT--CSEEEECCSCCCCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred hCC--CCEEEEeCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCch
Confidence 765 9999866555431 1357888888889888777789998
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=83.40 E-value=39 Score=35.83 Aligned_cols=193 Identities=13% Similarity=0.179 Sum_probs=117.7
Q ss_pred cCCCCeeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 008629 265 GTTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 323 (559)
Q Consensus 265 r~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~ 323 (559)
+..+++||--- ..+|=-+++.+|+..|- .+..|.+.++.|+|.|..|..+|+.+...
T Consensus 101 ~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG~~vA~~l~~~-- 178 (416)
T 3k5p_A 101 KRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESL-- 178 (416)
T ss_dssp HTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHHHHHHHHHHT--
T ss_pred hcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHHHHHHHHHHHC--
Confidence 45788888643 23455678888888753 24678999999999999999999988653
Q ss_pred HhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 008629 324 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 399 (559)
Q Consensus 324 ~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~ 399 (559)
|+ +++.+|+.. + .... -+ ....+|.|+++. .|+++=.-- .-+.|+++.++
T Consensus 179 ---G~-------~V~~yd~~~-----~---~~~~---~~---~~~~sl~ell~~--aDvV~lhvPlt~~T~~li~~~~l~ 232 (416)
T 3k5p_A 179 ---GM-------TVRYYDTSD-----K---LQYG---NV---KPAASLDELLKT--SDVVSLHVPSSKSTSKLITEAKLR 232 (416)
T ss_dssp ---TC-------EEEEECTTC-----C---CCBT---TB---EECSSHHHHHHH--CSEEEECCCC-----CCBCHHHHH
T ss_pred ---CC-------EEEEECCcc-----h---hccc---Cc---EecCCHHHHHhh--CCEEEEeCCCCHHHhhhcCHHHHh
Confidence 65 688888741 1 1100 01 123579999986 898874321 23689999999
Q ss_pred HHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCC-CC--CceeCCeeeCc-cCccccccchhhHHHHHHhC
Q 008629 400 AMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSP-FD--PFEYNGKVFVP-GQANNAYIFPGFGLGLVISG 475 (559)
Q Consensus 400 ~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSP-F~--pv~~~G~~~~p-~Q~NN~yiFPGlglG~l~~~ 475 (559)
.|. +..++.=.|.-..--|---.+|+ ..|+. .+.|.. |+ |..-+.....| =+..|+.+-|=+|-...-++
T Consensus 233 ~mk---~gailIN~aRG~vvd~~aL~~aL--~~g~i-~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~ 306 (416)
T 3k5p_A 233 KMK---KGAFLINNARGSDVDLEALAKVL--QEGHL-AGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQ 306 (416)
T ss_dssp HSC---TTEEEEECSCTTSBCHHHHHHHH--HTTSE-EEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHH
T ss_pred hCC---CCcEEEECCCChhhhHHHHHHHH--HcCCc-cEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHH
Confidence 996 67788888875422232233444 35664 323322 21 11101000011 35678999998764333322
Q ss_pred CcccCHHHHHHHHHHHHhccC
Q 008629 476 AIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 476 a~~Itd~m~~aAA~aLA~~v~ 496 (559)
+.|...+++.|.+.+.
T Consensus 307 -----~~~~~~~~~nl~~~l~ 322 (416)
T 3k5p_A 307 -----ERIGTEVTRKLVEYSD 322 (416)
T ss_dssp -----HHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHh
Confidence 4566667777776663
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=83.34 E-value=0.69 Score=47.19 Aligned_cols=104 Identities=20% Similarity=0.290 Sum_probs=63.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC--CCHHHHhccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKVI 378 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~--~~L~e~V~~v 378 (559)
||.|+|||..|.++|..|+.. |+ .+.+.++|.+-=..++-.-+|.+. ..+....... .+..++++.
T Consensus 2 kv~ViGaG~vG~~~a~~l~~~-----~~-----~~el~l~D~~~~k~~g~a~DL~~~-~~~~~~~~~v~~~~~~~a~~~- 69 (314)
T 3nep_X 2 KVTVIGAGNVGATVAECVARQ-----DV-----AKEVVMVDIKDGMPQGKALDMRES-SPIHGFDTRVTGTNDYGPTED- 69 (314)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----TC-----SSEEEEECSSTTHHHHHHHHHHHH-HHHHTCCCEEEEESSSGGGTT-
T ss_pred EEEEECCCHHHHHHHHHHHhC-----CC-----CCEEEEEeCchHHHHHHHHHHhcc-ccccCCCcEEEECCCHHHhCC-
Confidence 799999999999999988763 55 257999998521111000012211 1121100011 134567775
Q ss_pred CCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 379 KPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 379 kPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- .-+++++.+.++++..+|+-.|||.
T Consensus 70 -aDvVii~ag~~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvtNPv 121 (314)
T 3nep_X 70 -SDVCIITAGLPRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVANPL 121 (314)
T ss_dssp -CSEEEECCCC-------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCSSH
T ss_pred -CCEEEECCCCCCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecCCch
Confidence 88877444433 31 1256777888999999999999998
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=83.15 E-value=12 Score=38.12 Aligned_cols=123 Identities=16% Similarity=0.127 Sum_probs=81.4
Q ss_pred cCCCCeeecCCcc---hhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 008629 265 GTTHLVFNDDIQG---TASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 323 (559)
Q Consensus 265 r~~~~~FnDDiQG---TaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~ 323 (559)
+..+.+.|----. +|=-+++.+|+..|- .|..|.+.+|.|+|.|..|..+|+.+..
T Consensus 91 ~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~--- 167 (333)
T 1j4a_A 91 ELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEG--- 167 (333)
T ss_dssp HTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHH---
T ss_pred hCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHHHHHHHHH---
Confidence 3466777653333 334478888887762 2356889999999999999999998864
Q ss_pred HhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 008629 324 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 399 (559)
Q Consensus 324 ~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~ 399 (559)
.|+ +++.+|+.. . . . .+ .++. ...+|.|+++. .|+++=.-. ..++|+++.++
T Consensus 168 --~G~-------~V~~~d~~~----~--~-~--~~-~~~~---~~~~l~ell~~--aDvV~l~~p~~~~t~~li~~~~l~ 223 (333)
T 1j4a_A 168 --FGA-------KVITYDIFR----N--P-E--LE-KKGY---YVDSLDDLYKQ--ADVISLHVPDVPANVHMINDESIA 223 (333)
T ss_dssp --TTC-------EEEEECSSC----C--H-H--HH-HTTC---BCSCHHHHHHH--CSEEEECSCCCGGGTTCBSHHHHH
T ss_pred --CCC-------EEEEECCCc----c--h-h--HH-hhCe---ecCCHHHHHhh--CCEEEEcCCCcHHHHHHHhHHHHh
Confidence 264 588888742 1 1 1 11 1221 12378898875 888885432 23678899999
Q ss_pred HHHcCCCCcEEEecCCCC
Q 008629 400 AMASFNEKPLILALSNPT 417 (559)
Q Consensus 400 ~Ma~~~erPIIFaLSNPt 417 (559)
.|. +..++.-.|.-.
T Consensus 224 ~mk---~ga~lIn~arg~ 238 (333)
T 1j4a_A 224 KMK---QDVVIVNVSRGP 238 (333)
T ss_dssp HSC---TTEEEEECSCGG
T ss_pred hCC---CCcEEEECCCCc
Confidence 886 567888777743
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=83.07 E-value=1.9 Score=41.40 Aligned_cols=95 Identities=14% Similarity=0.097 Sum_probs=56.2
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc---hhhccccCCCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---KPWAHEHEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k---~~fA~~~~~~~~L~e~V~~ 377 (559)
||.|+|+|..|..+|..|... | .+++++|+.- ++.+.+.... ..+-.. ....+ .++++.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~-----g-------~~V~~~~r~~----~~~~~l~~~~~~~~~~~~~-~~~~~-~~~~~~ 63 (291)
T 1ks9_A 2 KITVLGCGALGQLWLTALCKQ-----G-------HEVQGWLRVP----QPYCSVNLVETDGSIFNES-LTAND-PDFLAT 63 (291)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----T-------CEEEEECSSC----CSEEEEEEECTTSCEEEEE-EEESC-HHHHHT
T ss_pred eEEEECcCHHHHHHHHHHHhC-----C-------CCEEEEEcCc----cceeeEEEEcCCCceeeee-eeecC-ccccCC
Confidence 799999999999999988753 5 3688888752 1111121100 000000 00122 466664
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
.|++|= +..+. ..+++++.+..+. +..+|..++|..
T Consensus 64 --~d~vi~-~v~~~-~~~~v~~~l~~~l~~~~~vv~~~~g~ 100 (291)
T 1ks9_A 64 --SDLLLV-TLKAW-QVSDAVKSLASTLPVTTPILLIHNGM 100 (291)
T ss_dssp --CSEEEE-CSCGG-GHHHHHHHHHTTSCTTSCEEEECSSS
T ss_pred --CCEEEE-EecHH-hHHHHHHHHHhhCCCCCEEEEecCCC
Confidence 888773 33332 3689999887653 456777788865
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=83.03 E-value=1.1 Score=44.19 Aligned_cols=32 Identities=31% Similarity=0.530 Sum_probs=26.8
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|..|.+||..+..+ |. +++++|++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~-----G~-------~V~~~d~~ 47 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAAT-----GH-------TVVLVDQT 47 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5899999999999999998753 63 68888874
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=83.02 E-value=3.2 Score=37.11 Aligned_cols=96 Identities=11% Similarity=0.096 Sum_probs=53.3
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHHhc
Q 008629 299 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVK 376 (559)
Q Consensus 299 d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~ 376 (559)
..+|+|.|| |-.|-.+++.|++ .| .++++++++.- +.+.+......+.. +..+..++.++++
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~-----~g-------~~V~~~~r~~~----~~~~~~~~~~~~~~~D~~~~~~~~~~~~ 66 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQ-----AG-------YEVTVLVRDSS----RLPSEGPRPAHVVVGDVLQAADVDKTVA 66 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH-----TT-------CEEEEEESCGG----GSCSSSCCCSEEEESCTTSHHHHHHHHT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHH-----CC-------CeEEEEEeChh----hcccccCCceEEEEecCCCHHHHHHHHc
Confidence 368999998 8777777777764 25 36888877521 10111011111111 2222235778887
Q ss_pred ccCCcEEEeccCCCCC---------CCHHHHHHHHcCCCCcEEEe
Q 008629 377 VIKPTILIGSSGVGRT---------FTKEVIEAMASFNEKPLILA 412 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~---------Ft~evv~~Ma~~~erPIIFa 412 (559)
. +|++|=+.+.... .+..++++|.+..-+.|||.
T Consensus 67 ~--~d~vi~~a~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~v~~ 109 (206)
T 1hdo_A 67 G--QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVAC 109 (206)
T ss_dssp T--CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred C--CCEEEECccCCCCCCccchHHHHHHHHHHHHHHhCCCeEEEE
Confidence 5 8999988775431 14556666655444455553
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=83.01 E-value=1.5 Score=47.13 Aligned_cols=32 Identities=22% Similarity=0.345 Sum_probs=26.2
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||.|+|+|..|.|||..++.+ |. +++++|.+
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~a-----G~-------~V~l~D~~ 86 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLA-----GI-------ETFLVVRN 86 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHC-----CC-------eEEEEECc
Confidence 6899999999999999988763 64 57777763
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=83.00 E-value=2.5 Score=43.00 Aligned_cols=210 Identities=13% Similarity=0.074 Sum_probs=117.6
Q ss_pred eeeccCCCCcHHH-HHH---HHcCCCCeeecCC----cchhHHHHHHHHHHHHH----------------hCCCcccceE
Q 008629 247 IQFEDFANHNAFE-LLA---KYGTTHLVFNDDI----QGTASVVLAGVVAALKL----------------IGGTLAEHRF 302 (559)
Q Consensus 247 Iq~EDf~~~~Af~-lL~---ryr~~~~~FnDDi----QGTaaV~LAgll~Alr~----------------~g~~l~d~ri 302 (559)
|+.-=.+-.|-.+ +-. -....+++.|--- +..|=-+++.+|+..|- .+..|.+.+|
T Consensus 63 I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tv 142 (315)
T 3pp8_A 63 VFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPLPEYTREEFSV 142 (315)
T ss_dssp EEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCCE
T ss_pred EEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCCCCCCcCCCEE
Confidence 5555455444323 222 1234677666322 34555678888887763 2567899999
Q ss_pred EEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcE
Q 008629 303 LFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTI 382 (559)
Q Consensus 303 v~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtv 382 (559)
.|+|.|..|..+|+.+.. .|+ +++.+|+..- ...... .+. ...+|.|+++. .|+
T Consensus 143 GIiG~G~IG~~vA~~l~~-----~G~-------~V~~~dr~~~-------~~~~~~-~~~----~~~~l~ell~~--aDi 196 (315)
T 3pp8_A 143 GIMGAGVLGAKVAESLQA-----WGF-------PLRCWSRSRK-------SWPGVE-SYV----GREELRAFLNQ--TRV 196 (315)
T ss_dssp EEECCSHHHHHHHHHHHT-----TTC-------CEEEEESSCC-------CCTTCE-EEE----SHHHHHHHHHT--CSE
T ss_pred EEEeeCHHHHHHHHHHHH-----CCC-------EEEEEcCCch-------hhhhhh-hhc----ccCCHHHHHhh--CCE
Confidence 999999999999998864 365 5777876421 111111 110 11468888885 888
Q ss_pred EEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCcee-CCeeeCccC
Q 008629 383 LIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVFVPGQ 457 (559)
Q Consensus 383 LIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~-~G~~~~p~Q 457 (559)
++=.- ..-+.|+++.++.|. +..|+.=.|.-..--|---.+|+ ..|+.-.|.=--|++--. .+. .-=+
T Consensus 197 V~l~~Plt~~t~~li~~~~l~~mk---~gailIN~aRG~~vd~~aL~~aL--~~g~i~gA~lDV~~~EPl~~~~--pL~~ 269 (315)
T 3pp8_A 197 LINLLPNTAQTVGIINSELLDQLP---DGAYVLNLARGVHVQEADLLAAL--DSGKLKGAMLDVFSQEPLPQES--PLWR 269 (315)
T ss_dssp EEECCCCCGGGTTCBSHHHHTTSC---TTEEEEECSCGGGBCHHHHHHHH--HHTSEEEEEESCCSSSSCCTTC--GGGG
T ss_pred EEEecCCchhhhhhccHHHHhhCC---CCCEEEECCCChhhhHHHHHHHH--HhCCccEEEcCCCCCCCCCCCC--hhhc
Confidence 87441 124688999888886 67788877764322222223343 346543332111111000 000 0124
Q ss_pred ccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccC
Q 008629 458 ANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 458 ~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~ 496 (559)
..|+.+-|=++- .+. .+.|...+++-|.....
T Consensus 270 ~~nvilTPHia~------~t~-~~~~~~~~~~ni~~~~~ 301 (315)
T 3pp8_A 270 HPRVAMTPHIAA------VTR-PAEAIDYISRTITQLEK 301 (315)
T ss_dssp CTTEEECSSCSS------CCC-HHHHHHHHHHHHHHHHH
T ss_pred CCCEEECCCCCc------ccH-HHHHHHHHHHHHHHHHc
Confidence 567888887652 222 25676667777766654
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=82.99 E-value=0.86 Score=46.45 Aligned_cols=107 Identities=17% Similarity=0.267 Sum_probs=66.0
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC--ccccCCcCCCchhchhhccccCCC--CCHH
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG--LIVSSRKDSLQHFKKPWAHEHEPV--NNLL 372 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G--Li~~~R~~~l~~~k~~fA~~~~~~--~~L~ 372 (559)
.+..||.|+|||..|.++|-.+.. .|+ ..+.++|.+- =..++...+|.+. .++......+ .+-.
T Consensus 6 ~~~~kv~ViGaG~vG~~ia~~l~~-----~g~------~~v~l~D~~~~~~~~~g~a~dl~~~-~~~~~~~~~i~~t~d~ 73 (315)
T 3tl2_A 6 IKRKKVSVIGAGFTGATTAFLLAQ-----KEL------ADVVLVDIPQLENPTKGKALDMLEA-SPVQGFDANIIGTSDY 73 (315)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHH-----TTC------CEEEEECCGGGHHHHHHHHHHHHHH-HHHHTCCCCEEEESCG
T ss_pred cCCCEEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeccchHHHHHHhhhhHHHh-hhhccCCCEEEEcCCH
Confidence 345799999999999999988875 254 2789999861 1111110112221 2332211111 1124
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 373 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++++. .|++|=+.+.+ |- .-+++++.+.++++.-+|+-.|||.
T Consensus 74 ~a~~~--aDvVIiaag~p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvsNPv 130 (315)
T 3tl2_A 74 ADTAD--SDVVVITAGIARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLTNPV 130 (315)
T ss_dssp GGGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred HHhCC--CCEEEEeCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECCChH
Confidence 56664 88887554433 31 2257788888999999999999998
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=82.87 E-value=8.9 Score=39.24 Aligned_cols=97 Identities=15% Similarity=0.068 Sum_probs=63.4
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..|.+.+|.|+|.|..|..+|+.+... .|+ +++.+|+..- .....+..-+. ...+|.|
T Consensus 158 ~~~l~g~~vgIIG~G~IG~~vA~~l~~~----~G~-------~V~~~d~~~~-------~~~~~~~~g~~---~~~~l~e 216 (348)
T 2w2k_A 158 AHNPRGHVLGAVGLGAIQKEIARKAVHG----LGM-------KLVYYDVAPA-------DAETEKALGAE---RVDSLEE 216 (348)
T ss_dssp CCCSTTCEEEEECCSHHHHHHHHHHHHT----TCC-------EEEEECSSCC-------CHHHHHHHTCE---ECSSHHH
T ss_pred CcCCCCCEEEEEEECHHHHHHHHHHHHh----cCC-------EEEEECCCCc-------chhhHhhcCcE---EeCCHHH
Confidence 5678999999999999999999988622 364 5888887421 11111100011 1137888
Q ss_pred HhcccCCcEEEeccC----CCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 374 AVKVIKPTILIGSSG----VGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~----~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
+++. .|+++=.-- ..+.++++.++.|. +..+|.-.|.-
T Consensus 217 ll~~--aDvVil~vp~~~~t~~li~~~~l~~mk---~gailin~srg 258 (348)
T 2w2k_A 217 LARR--SDCVSVSVPYMKLTHHLIDEAFFAAMK---PGSRIVNTARG 258 (348)
T ss_dssp HHHH--CSEEEECCCCSGGGTTCBCHHHHHHSC---TTEEEEECSCG
T ss_pred Hhcc--CCEEEEeCCCChHHHHHhhHHHHhcCC---CCCEEEECCCC
Confidence 8875 898875422 23688888888885 56677766653
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=82.79 E-value=2.8 Score=42.97 Aligned_cols=187 Identities=15% Similarity=0.096 Sum_probs=107.7
Q ss_pred CCCeeecCCc---chhHHHHHHHHHHHHH----------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcC
Q 008629 267 THLVFNDDIQ---GTASVVLAGVVAALKL----------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTK 327 (559)
Q Consensus 267 ~~~~FnDDiQ---GTaaV~LAgll~Alr~----------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G 327 (559)
.+++.|---- .+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|-.+|+.+... |
T Consensus 89 gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G 163 (324)
T 3hg7_A 89 DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHPYQGLKGRTLLILGTGSIGQHIAHTGKHF-----G 163 (324)
T ss_dssp SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCSTTCEEEEECCSHHHHHHHHHHHHT-----T
T ss_pred CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCCCcccccceEEEEEECHHHHHHHHHHHhC-----C
Confidence 4555554211 2344567777776652 35679999999999999999999998653 6
Q ss_pred CChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHc
Q 008629 328 APVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMAS 403 (559)
Q Consensus 328 ~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~ 403 (559)
+ +++.+|+.. .. ....... ....+|.|+++. .|+++=.- ..-+.|+++.++.|.
T Consensus 164 ~-------~V~~~dr~~----~~---~~~~~~~-----~~~~~l~ell~~--aDvV~l~lPlt~~T~~li~~~~l~~mk- 221 (324)
T 3hg7_A 164 M-------KVLGVSRSG----RE---RAGFDQV-----YQLPALNKMLAQ--ADVIVSVLPATRETHHLFTASRFEHCK- 221 (324)
T ss_dssp C-------EEEEECSSC----CC---CTTCSEE-----ECGGGHHHHHHT--CSEEEECCCCCSSSTTSBCTTTTTCSC-
T ss_pred C-------EEEEEcCCh----HH---hhhhhcc-----cccCCHHHHHhh--CCEEEEeCCCCHHHHHHhHHHHHhcCC-
Confidence 5 588888753 11 1111111 123578888875 88887542 224678888887775
Q ss_pred CCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEe-----eCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcc
Q 008629 404 FNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFA-----SGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIR 478 (559)
Q Consensus 404 ~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifA-----sGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~ 478 (559)
+..++.=.|.-..--|---.+|+ .+|+.-.| ..-|.++- . .-=+..|+.+-|=++- .+.
T Consensus 222 --~gailIN~aRG~~vde~aL~~aL--~~g~i~ga~lDV~~~EPl~~~----~--pL~~~~nvilTPHia~------~t~ 285 (324)
T 3hg7_A 222 --PGAILFNVGRGNAINEGDLLTAL--RTGKLGMAVLDVFEQEPLPAD----S--PLWGQPNLIITPHNSA------YSF 285 (324)
T ss_dssp --TTCEEEECSCGGGBCHHHHHHHH--HTTSSSEEEESCCSSSSCCTT----C--TTTTCTTEEECCSCSS------CCC
T ss_pred --CCcEEEECCCchhhCHHHHHHHH--HcCCceEEEeccCCCCCCCCC----C--hhhcCCCEEEeCCCcc------ccH
Confidence 66788877763322222222333 24443111 11122110 0 0113568888887652 222
Q ss_pred cCHHHHHHHHHHHHhccCc
Q 008629 479 VHDDMLLAASEALAKQVTE 497 (559)
Q Consensus 479 Itd~m~~aAA~aLA~~v~~ 497 (559)
...|...+++-|.....-
T Consensus 286 -~~~~~~~~~~nl~~~~~G 303 (324)
T 3hg7_A 286 -PDDVAQIFVRNYIRFIDG 303 (324)
T ss_dssp -HHHHHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHHHHcC
Confidence 256777777777776643
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=82.73 E-value=5.5 Score=40.69 Aligned_cols=189 Identities=15% Similarity=0.242 Sum_probs=109.2
Q ss_pred CCCCeeecCC---cchhHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDI---QGTASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISK 324 (559)
Q Consensus 266 ~~~~~FnDDi---QGTaaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~ 324 (559)
..+++.|--- +.+|=-+++.+|+..|- .+..|.+.+|.|+|.|..|-.+|+.+...
T Consensus 83 ~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~~~~~l~gktvGIiGlG~IG~~vA~~l~~~--- 159 (324)
T 3evt_A 83 AGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASAL--- 159 (324)
T ss_dssp TTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSSCCCCSTTCEEEEECCSHHHHHHHHHHHHT---
T ss_pred CCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCCCCccccCCeEEEECcCHHHHHHHHHHHhC---
Confidence 4566666542 23344466777776542 26679999999999999999999988643
Q ss_pred hcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHH
Q 008629 325 QTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEA 400 (559)
Q Consensus 325 ~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~ 400 (559)
|+ +++.+|+..- . .......+ ...+|.|+++. .|+++=.- ..-+.|+++.+..
T Consensus 160 --G~-------~V~~~dr~~~----~---~~~~~~~~-----~~~~l~ell~~--aDvV~l~lPlt~~t~~li~~~~l~~ 216 (324)
T 3evt_A 160 --GM-------HVIGVNTTGH----P---ADHFHETV-----AFTATADALAT--ANFIVNALPLTPTTHHLFSTELFQQ 216 (324)
T ss_dssp --TC-------EEEEEESSCC----C---CTTCSEEE-----EGGGCHHHHHH--CSEEEECCCCCGGGTTCBSHHHHHT
T ss_pred --CC-------EEEEECCCcc----h---hHhHhhcc-----ccCCHHHHHhh--CCEEEEcCCCchHHHHhcCHHHHhc
Confidence 65 5788887521 1 11111111 12468888886 88888432 2246899999988
Q ss_pred HHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEee-----CCCCCCceeCCeeeCccCccccccchhhHHHHHHhC
Q 008629 401 MASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFAS-----GSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISG 475 (559)
Q Consensus 401 Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAs-----GSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~ 475 (559)
|. +..++.=.|.-..--|-.-.+|++ +|+.-.|. .-|.++ +. .-=+..|+.+-|=++-.
T Consensus 217 mk---~gailIN~aRG~~vd~~aL~~aL~--~g~i~gA~lDV~~~EPl~~----~~--pL~~~~nvilTPHia~~----- 280 (324)
T 3evt_A 217 TK---QQPMLINIGRGPAVDTTALMTALD--HHQLSMAALDVTEPEPLPT----DH--PLWQRDDVLITPHISGQ----- 280 (324)
T ss_dssp CC---SCCEEEECSCGGGBCHHHHHHHHH--TTSCSEEEESSCSSSSCCT----TC--GGGGCSSEEECCSCTTC-----
T ss_pred CC---CCCEEEEcCCChhhhHHHHHHHHH--hCCceEEEeCCCCCCCCCC----CC--hhhcCCCEEEcCccccC-----
Confidence 86 667888777633222322233333 45432221 112111 00 01235688888876521
Q ss_pred CcccCHHHHHHHHHHHHhccC
Q 008629 476 AIRVHDDMLLAASEALAKQVT 496 (559)
Q Consensus 476 a~~Itd~m~~aAA~aLA~~v~ 496 (559)
...-.+.|...+++-|...+.
T Consensus 281 t~~~~~~~~~~~~~nl~~~l~ 301 (324)
T 3evt_A 281 IAHFRATVFPIFAANFAQFVK 301 (324)
T ss_dssp CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 122235666666776666653
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=82.39 E-value=1.4 Score=46.44 Aligned_cols=119 Identities=24% Similarity=0.280 Sum_probs=67.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
.++.+||+|+|.|.+|+++|++|.+ .| .++...|.+-.-.....+.|...-.++-... .-.+.+
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~-----~G-------~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~----~~~~~~ 69 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAK-----LG-------AIVTVNDGKPFDENPTAQSLLEEGIKVVCGS----HPLELL 69 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHH-----TT-------CEEEEEESSCGGGCHHHHHHHHTTCEEEESC----CCGGGG
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHh-----CC-------CEEEEEeCCcccCChHHHHHHhCCCEEEECC----ChHHhh
Confidence 4678999999999999999888875 37 3688888852110000001211111111110 011122
Q ss_pred cccC-CcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCCCceeCCeee
Q 008629 376 KVIK-PTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVF 453 (559)
Q Consensus 376 ~~vk-PtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~pv~~~G~~~ 453 (559)
+ + +|.+|=.++.+ .=++++.++... .-||| +. +|-++...+++.|-.||| ||||-
T Consensus 70 ~--~~~d~vv~spgi~-~~~p~~~~a~~~--gi~v~-------~~----~e~~~~~~~~~~IaVTGT-------nGKTT 125 (451)
T 3lk7_A 70 D--EDFCYMIKNPGIP-YNNPMVKKALEK--QIPVL-------TE----VELAYLVSESQLIGITGS-------NGKTT 125 (451)
T ss_dssp G--SCEEEEEECTTSC-TTSHHHHHHHHT--TCCEE-------CH----HHHHHHHCCSEEEEEECS-------SCHHH
T ss_pred c--CCCCEEEECCcCC-CCChhHHHHHHC--CCcEE-------eH----HHHHHHhcCCCEEEEECC-------CCHHH
Confidence 2 3 68777555655 347777766542 45655 22 233444566788889997 77754
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=82.02 E-value=0.78 Score=47.04 Aligned_cols=102 Identities=17% Similarity=0.250 Sum_probs=64.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhcc-ccCCCCCHHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAH-EHEPVNNLLD 373 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~-~~~~~~~L~e 373 (559)
-.||.|+|||..|..+|..|+.. |+ ...+.++|.+ .++-+ +|.+. .+|.. ...-..+..+
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~-----~~-----~~~l~l~D~~----~~k~~g~a~DL~~~-~~~~~~~v~i~~~~~~ 69 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQ-----GI-----TDELVVIDVN----KEKAMGDVMDLNHG-KAFAPQPVKTSYGTYE 69 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----TC-----CSEEEEECSC----HHHHHHHHHHHHHT-GGGSSSCCEEEEECGG
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-----CC-----CceEEEEecc----hHHHHHHHHHHHhc-cccccCCeEEEeCcHH
Confidence 46899999999999999888753 55 2579999974 11100 13322 23321 1000112235
Q ss_pred HhcccCCcEEEeccCCC---CC-----C------CHHHHHHHHcCCCCcEEEecCCCC
Q 008629 374 AVKVIKPTILIGSSGVG---RT-----F------TKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~---g~-----F------t~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+++. .|++|=+.+.+ |- | -+++++.+.++++.-+|+-.|||.
T Consensus 70 a~~~--aDvVvi~ag~p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvtNPv 125 (326)
T 3pqe_A 70 DCKD--ADIVCICAGANQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVATNPV 125 (326)
T ss_dssp GGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred HhCC--CCEEEEecccCCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCChH
Confidence 6664 88877444433 31 1 257778888999999999999998
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=3.2 Score=41.48 Aligned_cols=111 Identities=13% Similarity=0.173 Sum_probs=63.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccC-CcCCCchhch--hhccc------cCCCC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSS-RKDSLQHFKK--PWAHE------HEPVN 369 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~-R~~~l~~~k~--~fA~~------~~~~~ 369 (559)
..||.|+|+|..|..+|..|... |........+++++|+..-.... +.+.+..... .|-.. .....
T Consensus 8 ~mkI~iIG~G~mG~~~a~~l~~~-----g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 82 (354)
T 1x0v_A 8 SKKVCIVGSGNWGSAIAKIVGGN-----AAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVP 82 (354)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHH-----HHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEES
T ss_pred CCeEEEECCCHHHHHHHHHHHhc-----CCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEc
Confidence 36899999999999999998764 31000001468888875321000 0000110000 01000 00014
Q ss_pred CHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 008629 370 NLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 418 (559)
Q Consensus 370 ~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 418 (559)
++.++++. +|++| ++..+ ...+++++.+..+. +..+|..++|-.+
T Consensus 83 ~~~~~~~~--aD~Vi-lav~~-~~~~~v~~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 83 DVVQAAED--ADILI-FVVPH-QFIGKICDQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp SHHHHHTT--CSEEE-ECCCG-GGHHHHHHHHTTCSCTTCEEEECCCCBC
T ss_pred CHHHHHcC--CCEEE-EeCCH-HHHHHHHHHHHhhCCCCCEEEEECCccC
Confidence 68888874 88777 33333 46789999887654 4668888999654
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=81.89 E-value=12 Score=38.09 Aligned_cols=121 Identities=17% Similarity=0.142 Sum_probs=80.7
Q ss_pred CCCCeeecCCcch---hHHHHHHHHHHHHH-------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHH
Q 008629 266 TTHLVFNDDIQGT---ASVVLAGVVAALKL-------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEIS 323 (559)
Q Consensus 266 ~~~~~FnDDiQGT---aaV~LAgll~Alr~-------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~ 323 (559)
..+.+.|---..+ |=-+++.+|+..|- .|..|.+.++.|+|.|..|..+|+.+...
T Consensus 90 ~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l~~~-- 167 (333)
T 1dxy_A 90 YGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGF-- 167 (333)
T ss_dssp TTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHT--
T ss_pred CCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHHHHHHHHC--
Confidence 4566666433333 34467777777651 34678999999999999999999988642
Q ss_pred HhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEeccC----CCCCCCHHHHH
Q 008629 324 KQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSG----VGRTFTKEVIE 399 (559)
Q Consensus 324 ~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~----~~g~Ft~evv~ 399 (559)
|+ +++.+|+.. .. . .. .++. ..+|.|+++. .|+++=.-- ..++|+++.++
T Consensus 168 ---G~-------~V~~~d~~~----~~-~-~~----~~~~----~~~l~ell~~--aDvV~~~~P~~~~t~~li~~~~l~ 221 (333)
T 1dxy_A 168 ---GA-------KVIAYDPYP----MK-G-DH----PDFD----YVSLEDLFKQ--SDVIDLHVPGIEQNTHIINEAAFN 221 (333)
T ss_dssp ---TC-------EEEEECSSC----CS-S-CC----TTCE----ECCHHHHHHH--CSEEEECCCCCGGGTTSBCHHHHH
T ss_pred ---CC-------EEEEECCCc----ch-h-hH----hccc----cCCHHHHHhc--CCEEEEcCCCchhHHHHhCHHHHh
Confidence 64 588888752 11 1 11 1121 1378898885 898885422 23688999999
Q ss_pred HHHcCCCCcEEEecCCCC
Q 008629 400 AMASFNEKPLILALSNPT 417 (559)
Q Consensus 400 ~Ma~~~erPIIFaLSNPt 417 (559)
.|. +..++.=.|.-.
T Consensus 222 ~mk---~ga~lIn~srg~ 236 (333)
T 1dxy_A 222 LMK---PGAIVINTARPN 236 (333)
T ss_dssp HSC---TTEEEEECSCTT
T ss_pred hCC---CCcEEEECCCCc
Confidence 986 567887777633
|
| >1hye_A L-lactate/malate dehydrogenase; nucleotide binding domain, oxidoreductase; HET: NAP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.2.1.5 d.162.1.1 PDB: 1hyg_A* | Back alignment and structure |
|---|
Probab=81.59 E-value=1.8 Score=43.52 Aligned_cols=102 Identities=20% Similarity=0.280 Sum_probs=64.0
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc--cC-ccccCCcCCCchhchhhcc-cc--CC-CCCHH
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--KG-LIVSSRKDSLQHFKKPWAH-EH--EP-VNNLL 372 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~--~G-Li~~~R~~~l~~~k~~fA~-~~--~~-~~~L~ 372 (559)
||+|.|| |..|..++..|+. .|+ ...+.|+|. +- .+..... +|.+.. ++.. +. .. ..+|.
T Consensus 2 KI~V~GaaG~vG~~l~~~L~~-----~~~-----~~el~L~Di~~~~~~~~~~~~-dl~~~~-~~~~~~~~i~~~~d~l~ 69 (313)
T 1hye_A 2 KVTIIGASGRVGSATALLLAK-----EPF-----MKDLVLIGREHSINKLEGLRE-DIYDAL-AGTRSDANIYVESDENL 69 (313)
T ss_dssp EEEEETTTSHHHHHHHHHHHT-----CTT-----CCEEEEEECGGGHHHHHHHHH-HHHHHH-TTSCCCCEEEEEETTCG
T ss_pred EEEEECCCChhHHHHHHHHHh-----CCC-----CCEEEEEcCCCchhhhHHHHH-HHHHhH-HhcCCCeEEEeCCcchH
Confidence 8999999 9999998887753 254 246899997 31 0000000 122211 2221 10 00 01377
Q ss_pred HHhcccCCcEEEeccCCCC---C-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGR---T-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g---~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++++. .|++|=+.+.+. . .+++++++|.+++ +.+|+--|||.
T Consensus 70 ~al~g--aD~Vi~~Ag~~~~~g~~r~dl~~~N~~i~~~i~~~i~~~~-~~~vlv~SNPv 125 (313)
T 1hye_A 70 RIIDE--SDVVIITSGVPRKEGMSRMDLAKTNAKIVGKYAKKIAEIC-DTKIFVITNPV 125 (313)
T ss_dssp GGGTT--CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHC-CCEEEECSSSH
T ss_pred HHhCC--CCEEEECCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhC-CeEEEEecCcH
Confidence 88886 898887766542 1 3568888999999 99999999998
|
| >1y8q_A Ubiquitin-like 1 activating enzyme E1A; SUMO, heterodimer, UBL, ligase; HET: ATP; 2.25A {Homo sapiens} PDB: 1y8r_A* 3kyc_A* 3kyd_A* | Back alignment and structure |
|---|
Probab=81.56 E-value=1.1 Score=46.16 Aligned_cols=37 Identities=27% Similarity=0.439 Sum_probs=33.1
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.||+++|+|..|.-||+.|+.+ |+ ++|.++|.+
T Consensus 33 ~L~~~~VlivG~GGlG~~ia~~La~~-----Gv------g~itlvD~d 69 (346)
T 1y8q_A 33 RLRASRVLLVGLKGLGAEIAKNLILA-----GV------KGLTMLDHE 69 (346)
T ss_dssp HHHTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHc-----CC------CEEEEEECC
Confidence 57788999999999999999999875 76 789999976
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.41 E-value=1.6 Score=46.05 Aligned_cols=22 Identities=32% Similarity=0.560 Sum_probs=20.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALE 321 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~ 321 (559)
.||.|+|||+=|+.+|..|.+.
T Consensus 35 ~KI~ViGaGsWGTALA~~la~n 56 (391)
T 4fgw_A 35 FKVTVIGSGNWGTTIAKVVAEN 56 (391)
T ss_dssp EEEEEECCSHHHHHHHHHHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHHc
Confidence 4999999999999999999875
|
| >1y7t_A Malate dehydrogenase; NAD-dependent-MDH-NADPH complex, oxidoreductase; HET: NDP; 1.65A {Thermus thermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1iz9_A* 2cvq_A* 1bmd_A* 1bdm_A* 1wze_A* 1wzi_A* | Back alignment and structure |
|---|
Probab=81.09 E-value=1 Score=45.21 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=65.5
Q ss_pred ceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc---cccCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 300 HRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL---IVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 300 ~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL---i~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
.||+|.|| |..|..++..|+. .|.--..-...++++|...- ...... +|.+...+|..+.....++.+++
T Consensus 5 mkVlVtGaaGfIG~~l~~~L~~-----~g~~~~~~~~ev~l~D~~~~~~~~~g~~~-dl~~~~~~~~~di~~~~~~~~a~ 78 (327)
T 1y7t_A 5 VRVAVTGAAGQIGYSLLFRIAA-----GEMLGKDQPVILQLLEIPQAMKALEGVVM-ELEDCAFPLLAGLEATDDPKVAF 78 (327)
T ss_dssp EEEEESSTTSHHHHHHHHHHHT-----TTTTCTTCCEEEEEECCGGGHHHHHHHHH-HHHTTTCTTEEEEEEESCHHHHT
T ss_pred CEEEEECCCCHHHHHHHHHHHh-----CCCCCCCCCCEEEEEeCCCchhhccchhh-hhhcccccccCCeEeccChHHHh
Confidence 48999997 9999998887754 24310000136999997420 000000 12111112322222224688888
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 376 KVIKPTILIGSSGVGRT--------------FTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
+. +|++|=+.+.+.. .|.++++++.+++ .+.+++-.|||.
T Consensus 79 ~~--~D~Vih~Ag~~~~~~~~~~~~~~~Nv~~t~~l~~a~~~~~~~~~~vvv~snp~ 133 (327)
T 1y7t_A 79 KD--ADYALLVGAAPRKAGMERRDLLQVNGKIFTEQGRALAEVAKKDVKVLVVGNPA 133 (327)
T ss_dssp TT--CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECSSSH
T ss_pred CC--CCEEEECCCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEeCCch
Confidence 75 9999977765532 3556788888876 666788899996
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=81.07 E-value=3 Score=41.81 Aligned_cols=100 Identities=10% Similarity=0.155 Sum_probs=59.3
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
..||.|+|+|..|..+|..|... |+. ...+++++|+. .++ +.+...++ + ...-..+..|+++.
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~-----G~~---~~~~V~v~~r~----~~~-~~~~~l~~-~--G~~~~~~~~e~~~~- 84 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAA-----GVL---AAHKIMASSPD----MDL-ATVSALRK-M--GVKLTPHNKETVQH- 84 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHT-----TSS---CGGGEEEECSC----TTS-HHHHHHHH-H--TCEEESCHHHHHHH-
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-----CCC---CcceEEEECCC----ccH-HHHHHHHH-c--CCEEeCChHHHhcc-
Confidence 45899999999999999988753 531 11468888764 110 01111110 0 00011357777775
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNPTS 418 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNPt~ 418 (559)
.|++| ++..+ ...+++++.+... .+..+|.-+||..+
T Consensus 85 -aDvVi-lav~~-~~~~~vl~~l~~~l~~~~ivvs~s~gi~ 122 (322)
T 2izz_A 85 -SDVLF-LAVKP-HIIPFILDEIGADIEDRHIVVSCAAGVT 122 (322)
T ss_dssp -CSEEE-ECSCG-GGHHHHHHHHGGGCCTTCEEEECCTTCC
T ss_pred -CCEEE-EEeCH-HHHHHHHHHHHhhcCCCCEEEEeCCCCC
Confidence 77766 33333 4577788777653 34567888888774
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=81.01 E-value=9.3 Score=38.41 Aligned_cols=176 Identities=13% Similarity=0.084 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHh----------------CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEc
Q 008629 278 TASVVLAGVVAALKLI----------------GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVD 341 (559)
Q Consensus 278 TaaV~LAgll~Alr~~----------------g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD 341 (559)
+|=-+++-+|+..|-. ...|.+.+|.|+|.|..|..+|+.+... |+ +++.+|
T Consensus 85 vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~-----G~-------~V~~~d 152 (290)
T 3gvx_A 85 VAEHAFALLLAHAKNILENNELMKAGIFRQSPTTLLYGKALGILGYGGIGRRVAHLAKAF-----GM-------RVIAYT 152 (290)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCCTTCEEEEECCSHHHHHHHHHHHHH-----TC-------EEEEEC
T ss_pred HHHHHHHHHHHHHHhhhhhhhHhhhcccccCCceeeecchheeeccCchhHHHHHHHHhh-----Cc-------EEEEEe
Confidence 3445666666665521 1458899999999999999999998753 65 688888
Q ss_pred ccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 342 SKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 342 ~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+.. .. ... ++ ...+|.|+++. .|+++=.- ..-+.|+++.++.|. +..+|.=.|.-.
T Consensus 153 r~~----~~---~~~-----~~---~~~~l~ell~~--aDiV~l~~P~t~~t~~li~~~~l~~mk---~gailIN~aRG~ 212 (290)
T 3gvx_A 153 RSS----VD---QNV-----DV---ISESPADLFRQ--SDFVLIAIPLTDKTRGMVNSRLLANAR---KNLTIVNVARAD 212 (290)
T ss_dssp SSC----CC---TTC-----SE---ECSSHHHHHHH--CSEEEECCCCCTTTTTCBSHHHHTTCC---TTCEEEECSCGG
T ss_pred ccc----cc---ccc-----cc---ccCChHHHhhc--cCeEEEEeeccccchhhhhHHHHhhhh---cCceEEEeehhc
Confidence 752 11 111 11 23579999986 88887432 224678898888886 677888777633
Q ss_pred CCCCCCHHHHhcccCCcEEEeeCCCC--CCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 008629 418 SQSECTAEEAYTWSKGRAIFASGSPF--DPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 495 (559)
Q Consensus 418 ~~~EctpedA~~wt~G~aifAsGSPF--~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v 495 (559)
.--|---.+|++ +|+.-.|.=--| +|. ..-=+..|+.+-|=++=| ....-.+.|...+++-|....
T Consensus 213 ~vd~~aL~~aL~--~g~i~ga~lDV~~~EP~------~pL~~~~nvilTPHiag~----~t~e~~~~~~~~~~~ni~~~~ 280 (290)
T 3gvx_A 213 VVSKPDMIGFLK--ERSDVWYLSDVWWNEPE------ITETNLRNAILSPHVAGG----MSGEIMDIAIQLAFENVRNFF 280 (290)
T ss_dssp GBCHHHHHHHHH--HCTTCEEEESCCTTTTS------CCSCCCSSEEECCSCSSC----BTTBCCHHHHHHHHHHHHHHT
T ss_pred ccCCcchhhhhh--hccceEEeeccccCCcc------cchhhhhhhhcCccccCC----ccchHHHHHHHHHHHHHHhhh
Confidence 212222223332 344332211111 111 111245688888876511 123345678888888887776
Q ss_pred Cc
Q 008629 496 TE 497 (559)
Q Consensus 496 ~~ 497 (559)
.-
T Consensus 281 ~~ 282 (290)
T 3gvx_A 281 EG 282 (290)
T ss_dssp C-
T ss_pred cC
Confidence 53
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=80.90 E-value=2.2 Score=41.51 Aligned_cols=96 Identities=16% Similarity=0.141 Sum_probs=56.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVI 378 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~v 378 (559)
-.||.|+|+|..|..+|..+... |. ..+++++|++. + .+...+..-..+ ....++.++++.
T Consensus 6 ~~~I~iIG~G~mG~~~a~~l~~~-----g~-----~~~V~~~d~~~----~---~~~~~~~~g~~~-~~~~~~~~~~~~- 66 (290)
T 3b1f_A 6 EKTIYIAGLGLIGASLALGIKRD-----HP-----HYKIVGYNRSD----R---SRDIALERGIVD-EATADFKVFAAL- 66 (290)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSSH----H---HHHHHHHTTSCS-EEESCTTTTGGG-
T ss_pred cceEEEEeeCHHHHHHHHHHHhC-----CC-----CcEEEEEcCCH----H---HHHHHHHcCCcc-cccCCHHHhhcC-
Confidence 35899999999999999988753 32 13688888641 1 111111100000 011356666764
Q ss_pred CCcEEEeccCCCCCCCHHHHHHHHcC--CCCcEEEecCCC
Q 008629 379 KPTILIGSSGVGRTFTKEVIEAMASF--NEKPLILALSNP 416 (559)
Q Consensus 379 kPtvLIG~S~~~g~Ft~evv~~Ma~~--~erPIIFaLSNP 416 (559)
+|++| ++..+... +++++.+..+ .+..||.-+||-
T Consensus 67 -aDvVi-lavp~~~~-~~v~~~l~~~~l~~~~ivi~~~~~ 103 (290)
T 3b1f_A 67 -ADVII-LAVPIKKT-IDFIKILADLDLKEDVIITDAGST 103 (290)
T ss_dssp -CSEEE-ECSCHHHH-HHHHHHHHTSCCCTTCEEECCCSC
T ss_pred -CCEEE-EcCCHHHH-HHHHHHHHhcCCCCCCEEEECCCC
Confidence 78877 44444333 8888888764 456677767763
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.67 E-value=1.6 Score=46.61 Aligned_cols=97 Identities=18% Similarity=0.184 Sum_probs=59.0
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc-----cccCCCCCHHHHh
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA-----HEHEPVNNLLDAV 375 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA-----~~~~~~~~L~e~V 375 (559)
||.|+|+|..|..+|..|... |. +++++|+.. ++ +....+.+- .......++.|++
T Consensus 3 kIgVIG~G~mG~~lA~~La~~-----G~-------~V~v~dr~~----~~---~~~l~~~~g~~~~~~~i~~~~~~~e~v 63 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEK-----GF-------KVAVFNRTY----SK---SEEFMKANASAPFAGNLKAFETMEAFA 63 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHT-----TC-------CEEEECSSH----HH---HHHHHHHTTTSTTGGGEEECSCHHHHH
T ss_pred EEEEEChHHHHHHHHHHHHHC-----CC-------EEEEEeCCH----HH---HHHHHHhcCCCCCCCCeEEECCHHHHH
Confidence 799999999999999988653 63 578887641 11 111111100 0011235788888
Q ss_pred ccc-CCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCC
Q 008629 376 KVI-KPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPT 417 (559)
Q Consensus 376 ~~v-kPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt 417 (559)
+.. ++|++| ++...+...+++++.+.... +.-||.-+||-.
T Consensus 64 ~~l~~aDvVi-laVp~~~~v~~vl~~l~~~l~~g~iIId~sng~ 106 (478)
T 1pgj_A 64 ASLKKPRKAL-ILVQAGAATDSTIEQLKKVFEKGDILVDTGNAH 106 (478)
T ss_dssp HHBCSSCEEE-ECCCCSHHHHHHHHHHHHHCCTTCEEEECCCCC
T ss_pred hcccCCCEEE-EecCChHHHHHHHHHHHhhCCCCCEEEECCCCC
Confidence 743 488877 44434335677887775433 456778888854
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=80.66 E-value=6.6 Score=41.32 Aligned_cols=165 Identities=12% Similarity=0.025 Sum_probs=90.4
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|.+.++.|+|.|..|..+|+.+.. .|+ +++.+|+.. . .....+ .+ ......+|.|
T Consensus 186 ~~~l~gktvGIIGlG~IG~~vA~~l~a-----~G~-------~V~~~d~~~----~---~~~~~~-~~--G~~~~~~l~e 243 (393)
T 2nac_A 186 AYDLEAMHVGTVAAGRIGLAVLRRLAP-----FDV-------HLHYTDRHR----L---PESVEK-EL--NLTWHATRED 243 (393)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHGG-----GTC-------EEEEECSSC----C---CHHHHH-HH--TCEECSSHHH
T ss_pred CccCCCCEEEEEeECHHHHHHHHHHHh-----CCC-------EEEEEcCCc----c---chhhHh-hc--CceecCCHHH
Confidence 567999999999999999999998764 264 577777641 1 011111 11 0011247899
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEEEeeCCCCC--Cce
Q 008629 374 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFD--PFE 447 (559)
Q Consensus 374 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~aifAsGSPF~--pv~ 447 (559)
+++. .|+++=.- ...++|+++.++.|. +..+|.=.|.-.---|-.-.+|+ .+|+.--|.--=|. |..
T Consensus 244 ll~~--aDvV~l~~Plt~~t~~li~~~~l~~mk---~gailIN~aRG~~vde~aL~~aL--~~g~i~gA~lDV~~~EP~~ 316 (393)
T 2nac_A 244 MYPV--CDVVTLNCPLHPETEHMINDETLKLFK---RGAYIVNTARGKLCDRDAVARAL--ESGRLAGYAGDVWFPQPAP 316 (393)
T ss_dssp HGGG--CSEEEECSCCCTTTTTCBSHHHHTTSC---TTEEEEECSCGGGBCHHHHHHHH--HTTSEEEEEESCCSSSSCC
T ss_pred HHhc--CCEEEEecCCchHHHHHhhHHHHhhCC---CCCEEEECCCchHhhHHHHHHHH--HcCCeeEEEEEecCCCCCC
Confidence 8885 89888542 224688899888886 56788877763211221122333 35653333211111 110
Q ss_pred eCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhcc
Q 008629 448 YNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQV 495 (559)
Q Consensus 448 ~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v 495 (559)
.+.. -=+..|+.+-|=++-....+ ...|...+++-|....
T Consensus 317 -~~~p--L~~~~nvilTPHia~~T~e~-----~~~~~~~~~~nl~~~~ 356 (393)
T 2nac_A 317 -KDHP--WRTMPYNGMTPHISGTTLTA-----QARYAAGTREILECFF 356 (393)
T ss_dssp -TTCG--GGTSTTBCCCCSCTTCSHHH-----HHHHHHHHHHHHHHHH
T ss_pred -CCCh--hHcCCCEEECCCCCcCcHHH-----HHHHHHHHHHHHHHHH
Confidence 0010 01356888888776422221 1234445555555544
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=80.26 E-value=2.9 Score=43.00 Aligned_cols=102 Identities=21% Similarity=0.182 Sum_probs=57.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccc----cCCc--CCCchhchhhccccCCCCCHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIV----SSRK--DSLQHFKKPWAHEHEPVNNLL 372 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~----~~R~--~~l~~~k~~fA~~~~~~~~L~ 372 (559)
..||.|+|+|+-|..+|..|... | .+++++|++--.. ..+. ..++..+ +.....-..++.
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~-----G-------~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~--l~~~i~~t~d~~ 94 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARK-----G-------QKVRLWSYESDHVDEMQAEGVNNRYLPNYP--FPETLKAYCDLK 94 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTT-----T-------CCEEEECSCHHHHHHHHHHSSBTTTBTTCC--CCTTEEEESCHH
T ss_pred CCeEEEECccHHHHHHHHHHHHC-----C-------CeEEEEeCCHHHHHHHHHcCCCcccCCCCc--cCCCeEEECCHH
Confidence 36899999999999999988753 5 3577777741100 0000 0011111 000000114688
Q ss_pred HHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 418 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 418 (559)
|+++. +|++| ++... .+.+++++.++.+. +..+|..++|-..
T Consensus 95 ea~~~--aDvVi-laVp~-~~~~~vl~~i~~~l~~~~ivvs~~kGi~ 137 (356)
T 3k96_A 95 ASLEG--VTDIL-IVVPS-FAFHEVITRMKPLIDAKTRIAWGTKGLA 137 (356)
T ss_dssp HHHTT--CCEEE-ECCCH-HHHHHHHHHHGGGCCTTCEEEECCCSCB
T ss_pred HHHhc--CCEEE-ECCCH-HHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 88874 77766 33322 36777777777544 4567777787553
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=80.04 E-value=1.9 Score=45.00 Aligned_cols=96 Identities=20% Similarity=0.311 Sum_probs=53.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-----------ccCCC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-----------EHEPV 368 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-----------~~~~~ 368 (559)
.||+|+|||-.|..+++.|.+ .|- .-.++.++|++ .++ +......+.. +..+.
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~-----~g~----~~~~V~v~~r~----~~~---~~~la~~l~~~~~~~~~~~~~D~~d~ 65 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAM-----NRE----VFSHITLASRT----LSK---CQEIAQSIKAKGYGEIDITTVDADSI 65 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-----CTT----TCCEEEEEESC----HHH---HHHHHHHHHHTTCCCCEEEECCTTCH
T ss_pred CEEEEECCCHHHHHHHHHHHh-----CCC----CceEEEEEECC----HHH---HHHHHHHhhhhcCCceEEEEecCCCH
Confidence 389999998666666665543 231 00368888774 111 2222222211 11122
Q ss_pred CCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 369 NNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 369 ~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
.++.++++..++|++|=+++.. +..+++++..+. ..++| =+|+
T Consensus 66 ~~l~~~l~~~~~DvVin~ag~~--~~~~v~~a~l~~-g~~vv-D~a~ 108 (405)
T 4ina_A 66 EELVALINEVKPQIVLNIALPY--QDLTIMEACLRT-GVPYL-DTAN 108 (405)
T ss_dssp HHHHHHHHHHCCSEEEECSCGG--GHHHHHHHHHHH-TCCEE-ESSC
T ss_pred HHHHHHHHhhCCCEEEECCCcc--cChHHHHHHHHh-CCCEE-EecC
Confidence 4688889888899999776532 456676665443 33444 2544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 559 | ||||
| d1o0sa2 | 294 | c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent | 1e-113 | |
| d1gq2a2 | 257 | c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent | 1e-111 | |
| d1pj3a2 | 259 | c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent | 1e-110 | |
| d1pj3a1 | 294 | c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent | 1e-103 | |
| d1o0sa1 | 308 | c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent | 1e-102 | |
| d1gq2a1 | 298 | c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent | 2e-95 | |
| d1vl6a1 | 222 | c.2.1.7 (A:155-376) Malate oxidoreductase (malic e | 2e-47 | |
| d1vl6a2 | 154 | c.58.1.3 (A:1-154) Malate oxidoreductase (malic en | 2e-07 |
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Score = 337 bits (866), Expect = e-113
Identities = 127/289 (43%), Positives = 173/289 (59%), Gaps = 42/289 (14%)
Query: 28 EDVYGEDRATEDQ-------LVTP-WTISVASGYCLLRDPRHNKGLAFTEKERDAHYLRG 79
EDVY + D+ L P LL++PR NKG+ F+ ER L G
Sbjct: 6 EDVYSHNLPPMDEKEMALYKLYRPERVTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHG 65
Query: 80 LLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLIDNVEELLPVVY 139
LLPPA ++Q+ Q +++ +R+ L +Y+ + L++RNE+LFY+++ D+V+EL+P+VY
Sbjct: 66 LLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYRVVCDHVKELMPIVY 125
Query: 140 TPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLG 197
TPTVG ACQ +G I+R+P+GLYI++ + KI ++L NW E ++ IVVTDGERILGLG
Sbjct: 126 TPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLG 185
Query: 198 DLGCQGMGIPVGKLALYTALGGIRPS--------------------------------AE 225
DLG G+GIPVGKLALY ALGG++P +
Sbjct: 186 DLGAYGIGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKD 245
Query: 226 YAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGTTHLVFNDD 274
Y LLD FM A + YG+K LIQFEDFAN NAF LL KY + +FNDD
Sbjct: 246 YDTLLDNFMKACTKKYGQKTLIQFEDFANPNAFRLLDKYQDKYTMFNDD 294
|
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Score = 331 bits (850), Expect = e-111
Identities = 126/255 (49%), Positives = 160/255 (62%), Gaps = 32/255 (12%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
GY +LRDP NKG+AFT +ER + GLLPP + Q Q ++ + + L +Y+
Sbjct: 3 GYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYIL 62
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+M L++RNE+LFYK+L ++E +P+VYTPTVG ACQ YG FRRP+GL+I++ ++G I
Sbjct: 63 LMSLQDRNEKLFYKVLTSDIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIA 122
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS-------- 223
+L++WPE I+ IVVTDGERILGLGDLGC GMGIPVGKLALYTA GG++P
Sbjct: 123 TMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVGKLALYTACGGVKPHQCLPVMLD 182
Query: 224 ------------------------AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 259
Y +LLDEFM AV YG LIQFEDFAN NAF
Sbjct: 183 VGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANAFR 242
Query: 260 LLAKYGTTHLVFNDD 274
LL KY + FNDD
Sbjct: 243 LLHKYRNKYCTFNDD 257
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 259 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Score = 327 bits (841), Expect = e-110
Identities = 122/255 (47%), Positives = 164/255 (64%), Gaps = 32/255 (12%)
Query: 52 GYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVA 111
G L+ +PR NKG+AFT +ER L+GLLPP + +Q +Q + ++++ PL+KY+
Sbjct: 5 GKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIY 64
Query: 112 MMELEERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKIL 171
+M ++ERNE+LFY++L D++E L+P+VYTPTVG AC +YG IFRRP+GL+IS+ ++G +
Sbjct: 65 IMGIQERNEKLFYRILQDDIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVR 124
Query: 172 EVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVGKLALYTALGGIRPS-------- 223
++ NWPE ++ +VVTDGERILGLGDLG GMGIPVGKL LYTA GIRP
Sbjct: 125 SIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVGKLCLYTACAGIRPDRCLPVCID 184
Query: 224 ------------------------AEYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFE 259
+Y +L+DEFM A+ YG LIQFEDF NHNAF
Sbjct: 185 VGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNAFR 244
Query: 260 LLAKYGTTHLVFNDD 274
L KY + FNDD
Sbjct: 245 FLRKYREKYCTFNDD 259
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} Length = 294 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Score = 309 bits (794), Expect = e-103
Identities = 127/287 (44%), Positives = 184/287 (64%), Gaps = 4/287 (1%)
Query: 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334
IQGTA+V LAG++AA K+I ++EH+ LFLGAGEA GIA LI + + + +E +
Sbjct: 1 IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVEN-GLSEQEAQ 59
Query: 335 KKICLVDSKGLIVSSRKDSLQHFKKP--WAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT 392
KKI + D GL+V RK + +++P + + DAV ++KP+ +IG +G GR
Sbjct: 60 KKIWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRL 119
Query: 393 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGK 451
FT +VI AMAS NE+P+I ALSNPT+Q+ECTAEEAYT ++GR +FASGSPF P + +G+
Sbjct: 120 FTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTEGRCLFASGSPFGPVKLTDGR 179
Query: 452 VFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511
VF PGQ NN YIFPG L +++ + D + L A++AL Q+T+E +G +YPP +N
Sbjct: 180 VFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLAN 239
Query: 512 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
I+++S NIA V Y +A R P P++ K + + Y +
Sbjct: 240 IQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSL 286
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} Length = 308 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Score = 307 bits (788), Expect = e-102
Identities = 117/284 (41%), Positives = 175/284 (61%), Gaps = 2/284 (0%)
Query: 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334
IQGTASV++AG++ ++ +++ ++LF GAG A TGIAE+I ++ + EE
Sbjct: 1 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQNEG-ISKEEAC 59
Query: 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT 394
+I L+D GL+ +RK+ +A + ++L+ ++ +P LIG+S V F
Sbjct: 60 NRIYLMDIDGLVTKNRKEMNPR-HVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFN 118
Query: 395 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKVFV 454
+EVI AMA NE+P+I ALSNPTS++ECTAEEAYT++ G A++ASGSPF FE NG +
Sbjct: 119 EEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGAALYASGSPFPNFELNGHTYK 178
Query: 455 PGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRK 514
PGQ NNAYIFPG LG ++ V +D+ L A++ +A VTE++ + G +YP IR+
Sbjct: 179 PGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIRE 238
Query: 515 ISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
IS IA +A Y+ G A P+P++L K + +Y Y
Sbjct: 239 ISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEEL 282
|
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} Length = 298 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Score = 291 bits (745), Expect = 2e-95
Identities = 131/285 (45%), Positives = 192/285 (67%), Gaps = 3/285 (1%)
Query: 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETR 334
IQGTASV +AG++AAL++ L++H LF GAGEA GIA LI + + K+ EE
Sbjct: 1 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQKE-GVSKEEAI 59
Query: 335 KKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFT 394
K+I +VDSKGLIV R K+ +AHEH + NL D VK IKPT+LIG + +G FT
Sbjct: 60 KRIWMVDSKGLIVKGRASLTPE-KEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFT 118
Query: 395 KEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEY-NGKVF 453
+++++ MA+FN++P+I ALSNPTS++ECTAE+ Y +++GR IFASGSPFDP +G+
Sbjct: 119 QQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGRGIFASGSPFDPVTLPSGQTL 178
Query: 454 VPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIR 513
PGQ NN+Y+FPG LG++ G + DD+ L +E +A++V+EEN ++G +YPP I+
Sbjct: 179 YPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQ 238
Query: 514 KISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNY 558
++S IA +A +AY A+ P+P++L S +Y+ Y +
Sbjct: 239 QVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCF 283
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Score = 163 bits (413), Expect = 2e-47
Identities = 60/255 (23%), Positives = 97/255 (38%), Gaps = 34/255 (13%)
Query: 274 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEET 333
D QGTA VV A + ALKL + E + + G G AG I + + ++
Sbjct: 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFL-----------LDLG 49
Query: 334 RKKICLVDSKGLIVSSRKDSL-QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRT 392
K + VD KG++ + ++ + A P D ++ G
Sbjct: 50 VKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSRGNI 109
Query: 393 FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAIFASGSPFDPFEYNGKV 452
E + + KP+I AL+NP + + G I A+G P +
Sbjct: 110 LKPEW---IKKMSRKPVIFALANPVPEIDPE----LAREAGAFIVATGRSDHPNQV---- 158
Query: 453 FVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNI 512
NN FPG G V + ++ +MLL+A EA+A+ E I P ++
Sbjct: 159 ------NNLLAFPGIMKGAVEKRS-KITKNMLLSAVEAIARSCE---PEPERIIPEAFDM 208
Query: 513 RKISANIAANVAAKA 527
+ + N+ V A
Sbjct: 209 K-VHLNVYTAVKGSA 222
|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} Length = 154 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Score = 48.6 bits (116), Expect = 2e-07
Identities = 35/136 (25%), Positives = 55/136 (40%), Gaps = 28/136 (20%)
Query: 135 LPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERIL 194
L ++YTP V + + P EK + N V VV+DG +L
Sbjct: 28 LSLLYTPGVADVARA---CAEDP--------EKTYVYTSRWNT------VAVVSDGSAVL 70
Query: 195 GLGDLGCQGMGIPV--GKLALYTALGG-----IRPSAEYAELLDEFMSAVKQNYGEKVLI 247
GLG++G G +PV GK L+ A I S E + + +++ ++G I
Sbjct: 71 GLGNIGPYG-ALPVMEGKAFLFKAFADIDAFPICLSESEEEKIISIVKSLEPSFGG---I 126
Query: 248 QFEDFANHNAFELLAK 263
ED F +L +
Sbjct: 127 NLEDIGAPKCFRILQR 142
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 559 | |||
| d1gq2a1 | 298 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1o0sa1 | 308 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1pj3a1 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1gq2a2 | 257 | Mitochondrial NAD(P)-dependent malic enzyme {Domes | 100.0 | |
| d1pj3a2 | 259 | Mitochondrial NAD(P)-dependent malic enzyme {Human | 100.0 | |
| d1o0sa2 | 294 | Mitochondrial NAD(P)-dependent malic enzyme {Pig r | 100.0 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 100.0 | |
| d1vl6a2 | 154 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 99.97 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.2 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.76 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 96.18 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 95.25 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 95.06 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 95.06 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 95.01 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 94.99 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 94.98 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 94.81 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 94.63 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 94.54 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 94.13 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 94.04 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 94.01 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 93.97 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 93.97 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 93.78 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 93.69 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 93.66 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 93.61 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 93.08 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 93.01 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 92.95 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 92.9 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 92.81 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 92.65 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 92.63 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 92.46 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 92.11 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 92.09 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 92.02 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 91.54 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 91.47 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 90.94 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 90.79 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 90.76 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 90.72 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 90.66 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 90.57 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 90.45 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 90.35 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 90.23 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 90.04 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 90.03 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 89.85 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 89.84 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 89.19 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.82 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 88.81 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 88.72 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 88.53 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 88.47 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 88.13 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 87.59 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 87.55 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 87.49 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 87.48 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 87.33 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 87.14 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 86.98 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 86.95 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 86.5 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 85.34 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 85.19 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 84.52 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 84.18 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 83.87 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 83.25 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 82.84 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 82.73 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 82.37 | |
| d1pj5a2 | 305 | N,N-dimethylglycine oxidase {Arthrobacter globifor | 81.71 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 81.4 | |
| d1cjca2 | 230 | Adrenodoxin reductase of mitochondrial p450 system | 81.2 | |
| d3c96a1 | 288 | Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: | 81.07 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 80.68 | |
| d1w4xa1 | 298 | Phenylacetone monooxygenase {Thermobifida fusca [T | 80.52 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 80.35 |
| >d1gq2a1 c.2.1.7 (A:280-580) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=100.00 E-value=1.1e-99 Score=771.20 Aligned_cols=283 Identities=47% Similarity=0.816 Sum_probs=277.2
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+.+|++ .|+|+|||+++|||+|++|||+++|.+ +
T Consensus 1 IQGTaaV~lAglinAlki~gk~l~d~kiV~~GAGsAg~gia~~l~~~~~~-~G~~~~~a~~~i~l~D~kGlv~~~R~~-l 78 (298)
T d1gq2a1 1 IQGTASVAVAGLLAALRITKNRLSDHTVLFQGAGEAALGIANLIVMAMQK-EGVSKEEAIKRIWMVDSKGLIVKGRAS-L 78 (298)
T ss_dssp THHHHHHHHHHHHHHHHHHTSCGGGCCEEEECCSHHHHHHHHHHHHHHHH-HTCCHHHHHTTEEEEETTEECBTTCSS-C
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHH-cCCChhhccceEEEEeCCCcccCCCcc-c
Confidence 89999999999999999999999999999999999999999999999987 599999999999999999999999965 8
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCc
Q 008629 355 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR 434 (559)
Q Consensus 355 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~ 434 (559)
+++|++|+++..+.++|.|+|+.+|||+|||+|+++|+||+|+||.|+++|+|||||||||||+++||+|||+|+||+|+
T Consensus 79 ~~~k~~~a~~~~~~~~l~~~i~~vkptvliG~s~~~g~ft~evv~~ma~~~~~PIIFaLSNPt~~~E~~~~~a~~wt~G~ 158 (298)
T d1gq2a1 79 TPEKEHFAHEHCEMKNLEDIVKDIKPTVLIGVAAIGGAFTQQILQDMAAFNKRPIIFALSNPTSKAECTAEQLYKYTEGR 158 (298)
T ss_dssp CTTGGGGCBSCCCCCCHHHHHHHHCCSEEEECSCCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHHTTTC
T ss_pred CHHHHHHHHHhhhhhhhHHHhhccChheeEecccccCcCCHHHHHHHHhhCCCCEEEEccCCCCcCCCCHHHHhhhcccc
Confidence 89999999998888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCcee-CCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCcc
Q 008629 435 AIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIR 513 (559)
Q Consensus 435 aifAsGSPF~pv~~-~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir 513 (559)
|||||||||+||++ +||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..|.|||+++++|
T Consensus 159 ai~AsGspf~pv~~~~Grs~~pnQ~NN~~~FPGiglGal~~~A~~Itd~M~~aAA~alA~~v~~~~l~~g~i~P~~~~ir 238 (298)
T d1gq2a1 159 GIFASGSPFDPVTLPSGQTLYPGQGNNSYVFPGVALGVISCGLKHIGDDVFLTTAEVIAQEVSEENLQEGRLYPPLVTIQ 238 (298)
T ss_dssp CEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHTCCHHHHHHTCSSCCGGGHH
T ss_pred eEEeecCCCCCeEecCCeEEecCCCchhhhhhhHHHHHHHhhhhhCCHHHHHHHHHHHHHhcchhcCCCCceeCCcchHH
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 514 KISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 514 ~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
+||.+||.||+++|+++|+|+..++|+|+++||+++||+|+|+||+
T Consensus 239 ~vs~~VA~aVa~~A~~~GvA~~~~~~~dl~~~i~~~~w~P~Y~~~~ 284 (298)
T d1gq2a1 239 QVSLKIAVRIAKEAYRNNTASTYPQPEDLEAFIRSQVYSTDYNCFV 284 (298)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHTTSCCCSCCCCS
T ss_pred HhHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhcCCCcccCcC
Confidence 9999999999999999999998888999999999999999999973
|
| >d1o0sa1 c.2.1.7 (A:296-603) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=100.00 E-value=4.7e-99 Score=768.78 Aligned_cols=283 Identities=41% Similarity=0.727 Sum_probs=277.3
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+.+|++ +|+++|||+++||++|++|||+++|.+ +
T Consensus 1 IQGTa~V~lAglinAlki~gk~l~d~kivi~GAGaAg~gia~~l~~~~~~-~G~~~~~a~~~i~~vD~~Glv~~~r~d-~ 78 (308)
T d1o0sa1 1 IQGTASVIVAGLLTCTRVTKKLVSQEKYLFFGAGAASTGIAEMIVHQMQN-EGISKEEACNRIYLMDIDGLVTKNRKE-M 78 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHT-TTCCHHHHHHTEEEEETTEECBTTCSS-C
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHHcEEEEECcCHHHHHHHHHHHHHHHh-cCCchhhhhceEEEEeCCCCccCCCcc-c
Confidence 79999999999999999999999999999999999999999999999987 599999999999999999999999964 9
Q ss_pred chhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCc
Q 008629 355 QHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGR 434 (559)
Q Consensus 355 ~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~ 434 (559)
+++|++||++..+..+|.|+|+.+|||+|||+|+++|+||+++||+|+++|+|||||||||||+++||+|||||+||+|+
T Consensus 79 ~~~k~~~a~~~~~~~~l~~~i~~~kptvliG~s~~~g~ft~evv~~Ma~~~~~PIIFaLSNPtp~~E~~~eda~~~t~G~ 158 (308)
T d1o0sa1 79 NPRHVQFAKDMPETTSILEVIRAARPGALIGASTVRGAFNEEVIRAMAEINERPIIFALSNPTSKAECTAEEAYTFTNGA 158 (308)
T ss_dssp CGGGTTTCBSSCCCCCHHHHHHHHCCSEEEECSSCTTCSCHHHHHHHHHHCSSCEEEECCSSGGGCSSCHHHHHHTTTSC
T ss_pred CHHHHHHHHhcccCCcHHHHHhccccccEEecccccCCCCHHHHHHHHhhCCCcEEEEccCCCCCCCCCHHHHHhhccCc
Confidence 99999999998888899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCCccc
Q 008629 435 AIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSNIRK 514 (559)
Q Consensus 435 aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ir~ 514 (559)
||||||||||||+++||+++||||||+|+|||||||+++++|++|||+||++||++||++++++++..|.|||+++++|+
T Consensus 159 ai~AtGSpfp~V~~~Gr~~~p~Q~NN~liFPGIglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l~~g~i~P~~~~~r~ 238 (308)
T d1o0sa1 159 ALYASGSPFPNFELNGHTYKPGQGNNAYIFPGVALGTILFQIRHVDNDLFLLAAKKVASCVTEDSLKVGRVYPQLKEIRE 238 (308)
T ss_dssp CEEEESSCCCCEEETTEEECCEECCGGGTHHHHHHHHHHHTBSCCCHHHHHHHHHHHHHTCCHHHHTTTCCSCCGGGHHH
T ss_pred EEEecCCCCCCeeecCceecccccceeeeccchheeeeecccccCCHHHHHHHHHHHHHhcCcccCCCCCCCCCCccHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 515 ISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 515 vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
||.+||.||+++|+++|+|+..++|+|+++|+++.||+|+|+||.
T Consensus 239 vs~~VA~AVa~~A~~~GvA~~~~~~~dl~~~i~~~mw~p~Y~~~~ 283 (308)
T d1o0sa1 239 ISIQIAVEMAKYCYKNGTANLYPQPEDLEKYVRAQVYNTEYEELI 283 (308)
T ss_dssp HHHHHHHHHHHHHHHTTCBCSSSCCSCHHHHHHHHSCCCSCCCCS
T ss_pred hhHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhCCCCCCcccc
Confidence 999999999999999999998888999999999999999999973
|
| >d1pj3a1 c.2.1.7 (A:280-573) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.3e-98 Score=760.67 Aligned_cols=284 Identities=45% Similarity=0.800 Sum_probs=275.8
Q ss_pred CcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC
Q 008629 275 IQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL 354 (559)
Q Consensus 275 iQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l 354 (559)
|||||+|+|||||||+|++|++|+||||||+|||+||+|||++|+.+|++ .|++++||+++|||+|++|||+++|.+.+
T Consensus 1 IqGTa~V~lAglinAlki~gk~l~d~kiv~~GAGsAg~gia~ll~~~~~~-~g~~~~~a~~~i~lvD~~Glv~~~r~~~~ 79 (294)
T d1pj3a1 1 IQGTAAVALAGLLAAQKVISKPISEHKILFLGAGEAALGIANLIVMSMVE-NGLSEQEAQKKIWMFDKYGLLVKGRKAKI 79 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCGGGCCEEEECCSHHHHHHHHHHHHHHHH-TTCCHHHHHHTEEEEETTEECBTTCSSCC
T ss_pred CcHHHHHHHHHHHHHHHHhCCCHHHcEEEEECccHHHHHHHHHHHHHHHh-cCCchhhccccEEEEeCCCCccCCCCccc
Confidence 79999999999999999999999999999999999999999999999987 69999999999999999999999998789
Q ss_pred chhchhhccccCC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccC
Q 008629 355 QHFKKPWAHEHEP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSK 432 (559)
Q Consensus 355 ~~~k~~fA~~~~~--~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~ 432 (559)
+++|++|+++..+ .++|+|+|+.+|||+|||+|+++|+|||||||+|+++|+|||||||||||+++||+|||||+||+
T Consensus 80 ~~~k~~~a~~~~~~~~~~L~e~i~~~kptvliG~S~~~g~ft~evi~~Ma~~~~~PIIFaLSNPt~~~e~~~~~a~~~t~ 159 (294)
T d1pj3a1 80 DSYQEPFTHSAPESIPDTFEDAVNILKPSTIIGVAGAGRLFTPDVIRAMASINERPVIFALSNPTAQAECTAEEAYTLTE 159 (294)
T ss_dssp CTTTGGGCBCCCSSCCSSHHHHHHHHCCSEEEECCCSSCCSCHHHHHHHHHHCSSCEEEECCSSGGGCSCCHHHHHHHTT
T ss_pred HHHHHHhhccccccchhHHHHHHHhcCCceEEEecCCCCcCCHHHHHHHHhcCCCcEEEEccCCCCcCCcCHHHHHhhcc
Confidence 9999999987543 36899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcEEEeeCCCCCCcee-CCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCCCC
Q 008629 433 GRAIFASGSPFDPFEY-NGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPFSN 511 (559)
Q Consensus 433 G~aifAsGSPF~pv~~-~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~~~ 511 (559)
|||||||||||+||+| +||+++||||||+|+|||||||+++++|++|||+|+++||++||++++++++.++.|||++++
T Consensus 160 grai~asGspf~~v~~~~Gr~~~pnQ~NN~~iFPGiglGal~~~A~~Itd~M~~aAA~aLA~~v~~~~l~~~~i~P~~~~ 239 (294)
T d1pj3a1 160 GRCLFASGSPFGPVKLTDGRVFTPGQGNNVYIFPGVALAVILCNTRHISDSVFLEAAKALTSQLTDEELAQGRLYPPLAN 239 (294)
T ss_dssp TCCEEEESSCCCCEECTTSCEECCEECCGGGTHHHHHHHHHHTTCSCCCHHHHHHHHHHHHTTCCHHHHHTTCSSCCGGG
T ss_pred CceEeecCCccCCeEeCCCcEecCCCCceeccccchhhHHHhcCCCCcCHHHHHHHHHHHHhhCCccccCCCeecCCCcc
Confidence 9999999999999999 899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhCCCCCCCCchhHHHHHHhCCcccCCCCCC
Q 008629 512 IRKISANIAANVAAKAYELGVATRLPRPQNLVKCAESCMYTPVYRNYR 559 (559)
Q Consensus 512 ir~vs~~VA~aVa~~A~~~GvA~~~~~~~d~~~~i~~~m~~P~Y~~~~ 559 (559)
+|+||.+||.+|+++|+++|+|+..++|+|+.+||+++||+|+|+|+.
T Consensus 240 ir~vs~~VA~aVa~~A~~~g~A~~~~~~~~~~~~i~~~~w~p~Y~~~~ 287 (294)
T d1pj3a1 240 IQEVSINIAIKVTEYLYANKMAFRYPEPEDKAKYVKERTWRSEYDSLL 287 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCSSCCSSHHHHHHHTCCCCSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCCCChHHHHHHHHHhcCCCccCccC
Confidence 999999999999999999999998888999999999999999999973
|
| >d1gq2a2 c.58.1.3 (A:23-279) Mitochondrial NAD(P)-dependent malic enzyme {Domestic pigeon (Columba livia) [TaxId: 8932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Domestic pigeon (Columba livia) [TaxId: 8932]
Probab=100.00 E-value=2.6e-97 Score=733.97 Aligned_cols=225 Identities=56% Similarity=1.024 Sum_probs=223.2
Q ss_pred ccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHHhhh
Q 008629 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 129 (559)
Q Consensus 50 ~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 129 (559)
++|+++|+||.+|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||++||+|||++|++
T Consensus 1 krG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~~~l~Ky~yL~~L~~~Ne~LFY~ll~~ 80 (257)
T d1gq2a2 1 KKGYEVLRDPHLNKGMAFTLEERQQLNIHGLLPPCFLGQDAQVYSILKNFERLTSDLDRYILLMSLQDRNEKLFYKVLTS 80 (257)
T ss_dssp CCTTHHHHCTTTCCGGGSCHHHHHHTTCTTSSCSCBCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred CChHHHhcCCCccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhChHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccchhH
Q 008629 130 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 209 (559)
Q Consensus 130 ~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG 209 (559)
|++|+||||||||||+|||+||++||+|+|||||++|+|+|+++|+|||.++|++||||||+|||||||||++|||||+|
T Consensus 81 ~~~e~~PivYTPTVG~Ac~~ys~~yr~prGlyis~~d~g~i~~il~nwp~~~V~~iVVTDG~rILGlGD~G~~Gm~I~~g 160 (257)
T d1gq2a2 81 DIERFMPIVYTPTVGLACQHYGLAFRRPRGLFITIHDRGHIATMLQSWPESVIKAIVVTDGERILGLGDLGCYGMGIPVG 160 (257)
T ss_dssp THHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHHTSSCSCCCEEEEECSSSCGGGCCCGGGGGHHHHH
T ss_pred HHHHhcCcccCccHHHHHHHHhhhhccccceeeccCChHHHHHHHHhCCCCCeeEEEEecCceeeecCCcCcCccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcH
Q 008629 210 KLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 257 (559)
Q Consensus 210 Kl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~A 257 (559)
|++|||+||||||.+ +|++||||||+||+++|||+++||||||+++||
T Consensus 161 Kl~lyta~~Gi~P~~~LPv~LDvGTnNe~LL~DP~YlG~R~~R~~g~eY~~fvdefv~av~~~~p~~~~i~~EDf~~~na 240 (257)
T d1gq2a2 161 KLALYTACGGVKPHQCLPVMLDVGTDNETLLKDPLYIGLRHKRIRGQAYDDLLDEFMEAVTSRYGMNCLIQFEDFANANA 240 (257)
T ss_dssp HHHHHHHTTCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCTHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred HHHHHHHhcCCCHhhcCCeeecCCCChHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhCCCCCEEehhhcCCchH
Confidence 999999999999997 899999999999999998899999999999999
Q ss_pred HHHHHHHcCCCCeeecC
Q 008629 258 FELLAKYGTTHLVFNDD 274 (559)
Q Consensus 258 f~lL~ryr~~~~~FnDD 274 (559)
|++|+|||+++||||||
T Consensus 241 ~~~L~~yr~~~~~FNDD 257 (257)
T d1gq2a2 241 FRLLHKYRNKYCTFNDD 257 (257)
T ss_dssp HHHHHHHTTTSEEEETT
T ss_pred HHHHHHHccCCCccCCC
Confidence 99999999999999999
|
| >d1pj3a2 c.58.1.3 (A:21-279) Mitochondrial NAD(P)-dependent malic enzyme {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=3.7e-97 Score=733.61 Aligned_cols=225 Identities=54% Similarity=1.021 Sum_probs=223.6
Q ss_pred ccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHHHhhh
Q 008629 50 ASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYKLLID 129 (559)
Q Consensus 50 ~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ll~~ 129 (559)
++|+++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||++||+|||++|++
T Consensus 3 ~rG~~lL~~p~~NKGtAFt~~ER~~l~l~GLLP~~v~tle~Qv~r~~~~~~~~~t~l~Ky~yL~~L~~~Ne~LFY~ll~~ 82 (259)
T d1pj3a2 3 EKGKPLMLNPRTNKGMAFTLQERQMLGLQGLLPPKIETQDIQALRFHRNLKKMTSPLEKYIYIMGIQERNEKLFYRILQD 82 (259)
T ss_dssp CCSTHHHHSTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHCCSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred chHHHHhcCCCccCcCCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhcHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCccccchhH
Q 008629 130 NVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQGMGIPVG 209 (559)
Q Consensus 130 ~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~GmgI~iG 209 (559)
|++|+||||||||||+|||+||++||+|+|||||++|+|+|.++|+|||.++|++||||||||||||||+|++|||||+|
T Consensus 83 ~~~e~mPIvYTPTVg~Ac~~ys~~~r~prGlyis~~d~g~i~~il~nwp~~~v~~ivVTDG~rILGlGDlG~~Gm~I~~g 162 (259)
T d1pj3a2 83 DIESLMPIVYTPTVGLACSQYGHIFRRPKGLFISISDRGHVRSIVDNWPENHVKAVVVTDGERILGLGDLGVYGMGIPVG 162 (259)
T ss_dssp CHHHHHHHHSTTHHHHHHHTHHHHCSSCCSEEEEGGGTTCHHHHHTTCSCSCCCEEEEECSSSCTTSCCCGGGGGHHHHH
T ss_pred HHHHhCCeecCCchHHHHHHHHHhhcCccceEecccchhHHHHHHHhCCccCceEEEEecCceeecccccCcchhhHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcH
Q 008629 210 KLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNA 257 (559)
Q Consensus 210 Kl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~A 257 (559)
|++|||+||||||.+ +|++||||||+||+++|||+++||||||+++||
T Consensus 163 Kl~lyta~~Gi~P~~~lPv~lDvGTnNe~LL~DP~YlG~R~~R~~g~~Yd~fidefv~av~~~~gp~~li~~EDf~~~na 242 (259)
T d1pj3a2 163 KLCLYTACAGIRPDRCLPVCIDVGTDNIALLKDPFYMGLYQKRDRTQQYDDLIDEFMKAITDRYGRNTLIQFEDFGNHNA 242 (259)
T ss_dssp HHHHHHHHHCCCGGGEEEEEEESCCCCTTGGGCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECSCCHHHH
T ss_pred HHHHHHHcCCCChhhccceEEecCCcHHHHhcCcccccccCCCCcchHHHHHHHHHHHHHHHhcCCCcEEehhhcCCchH
Confidence 999999999999998 899999999999999999999999999999999
Q ss_pred HHHHHHHcCCCCeeecC
Q 008629 258 FELLAKYGTTHLVFNDD 274 (559)
Q Consensus 258 f~lL~ryr~~~~~FnDD 274 (559)
|++|+|||+++||||||
T Consensus 243 ~~~L~~yr~~~~~fNDD 259 (259)
T d1pj3a2 243 FRFLRKYREKYCTFNDD 259 (259)
T ss_dssp HHHHHHHTTTSSEEEHH
T ss_pred HHHHHHhccCCCccCCC
Confidence 99999999999999998
|
| >d1o0sa2 c.58.1.3 (A:2-295) Mitochondrial NAD(P)-dependent malic enzyme {Pig roundworm (Ascaris suum) [TaxId: 6253]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Mitochondrial NAD(P)-dependent malic enzyme species: Pig roundworm (Ascaris suum) [TaxId: 6253]
Probab=100.00 E-value=6.8e-97 Score=740.91 Aligned_cols=229 Identities=52% Similarity=0.949 Sum_probs=225.6
Q ss_pred ccccccccccccCcCCccCCCCCHHHHhhcccCCCCCCccccHHHHHHHHHHHHhcCCCchhHHHHHHHhHhhhhhhhHH
Q 008629 46 TISVASGYCLLRDPRHNKGLAFTEKERDAHYLRGLLPPAVISQQLQEKKLMNSIRQYEVPLQKYVAMMELEERNERLFYK 125 (559)
Q Consensus 46 ~~~~~~G~~~l~~p~~NKg~aFt~~ER~~l~l~GLlPp~v~t~e~Q~~r~~~~~~~~~~~l~Ky~~L~~L~~~Ne~Lfy~ 125 (559)
+.+.+||.++|+||++|||||||.+||++|||+|||||+|+|+|+|++|||.||+++++||+||+||++||++||+|||+
T Consensus 32 ~~~~~rG~~lL~~p~lNKGtAFt~~ER~~l~L~GLLP~~v~tle~Qv~R~~~~~~~~~t~l~Ky~~L~~L~~~Ne~LFYr 111 (294)
T d1o0sa2 32 VTPKKRSAELLKEPRLNKGMGFSLYERQYLGLHGLLPPAFMTQEQQAYRVITKLREQPNDLARYIQLDGLQDRNEKLFYR 111 (294)
T ss_dssp CCCSCCHHHHHTCTTTCCGGGSCHHHHHHTTCTTTSCSCCCCHHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHCHHHHHH
T ss_pred cCccccHHHHhcCCcccCccCCCHHHHHHcCCccCCCCCccCHHHHHHHHHHHHhccCCcHHHHHHHHHHHHhCchhhHH
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccccCCcccchhhHHHHHHHhhhhcCCCcccccccCc--chHHHHHhcCCCCCeeEEEEecCceecccCCCCCcc
Q 008629 126 LLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEK--GKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQG 203 (559)
Q Consensus 126 ll~~~~~e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~--g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~G 203 (559)
+|++|++|+||||||||||+|||+||++||+|+|||||++|+ |+|.++|+|||.++|++||||||||||||||||++|
T Consensus 112 ll~~h~ee~mPiVYTPTVG~Ac~~ys~~fr~prGlyisi~d~~~g~i~~il~nwp~~~V~~iVVTDG~rILGlGDlG~~G 191 (294)
T d1o0sa2 112 VVCDHVKELMPIVYTPTVGLACQNFGYIYRKPKGLYITINDNSVSKIYQILSNWHEEDVRAIVVTDGERILGLGDLGAYG 191 (294)
T ss_dssp HHHHTHHHHHHHHSTTHHHHHHHHHCSCCCCCCSEEEEGGGCSHHHHHHHHTTSSCSCCCEEEEECSSCBTTTBCCGGGG
T ss_pred HHHhHHHHhcCcccCccHHHHHHHHHhhhcCcceeEEeccccccchHHHHHhcCCcccceEEEEecCcceecccCcCccc
Confidence 999999999999999999999999999999999999999998 999999999999999999999999999999999999
Q ss_pred ccchhHHHHHHhHhcCCCCCc--------------------------------chhHhHHHHHHHHHHhhCCCeeeeecc
Q 008629 204 MGIPVGKLALYTALGGIRPSA--------------------------------EYAELLDEFMSAVKQNYGEKVLIQFED 251 (559)
Q Consensus 204 mgI~iGKl~LY~a~gGI~P~~--------------------------------~y~~~vdefv~av~~~fGp~~lIq~ED 251 (559)
|||||||++|||+||||||.+ +|++||||||+||+++|||+++|||||
T Consensus 192 m~I~~GKl~lyta~~Gi~P~~~LPV~LDvGTnNe~LL~DPlYlG~R~~R~~g~~Yd~fidefv~av~~~fgp~~li~~ED 271 (294)
T d1o0sa2 192 IGIPVGKLALYVALGGVQPKWCLPVLLDVGTNNMDLLNDPFYIGLRHKRVRGKDYDTLLDNFMKACTKKYGQKTLIQFED 271 (294)
T ss_dssp GHHHHHHHHHHHHHHCCCGGGEEEEEEESCCCCHHHHHCTTCCSCSSCCCCSHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred chhhhhHHHHHHHhcCCChhhccceEeecCCChHHhhcCcccccccCCCCCchHHHHHHHHHHHHHHHhhCCCCEEeehh
Confidence 999999999999999999987 899999999999999999999999999
Q ss_pred CCCCcHHHHHHHHcCCCCeeecC
Q 008629 252 FANHNAFELLAKYGTTHLVFNDD 274 (559)
Q Consensus 252 f~~~~Af~lL~ryr~~~~~FnDD 274 (559)
|+++|||++|+|||+++||||||
T Consensus 272 f~~~nA~~iL~kyr~~~~~FNDD 294 (294)
T d1o0sa2 272 FANPNAFRLLDKYQDKYTMFNDD 294 (294)
T ss_dssp CCHHHHHHHHHHHTTTSEEEEHH
T ss_pred CCChhHHHHHHHhcccCCccCCC
Confidence 99999999999999999999998
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2e-70 Score=536.64 Aligned_cols=218 Identities=33% Similarity=0.452 Sum_probs=196.2
Q ss_pred CCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCc-C
Q 008629 274 DIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK-D 352 (559)
Q Consensus 274 DiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~-~ 352 (559)
||||||+|+|||||||+|++|++|+||||||+|||+||+|||+||+++ |+++||++|++|||+++|. +
T Consensus 1 DiQGTaaV~LAgll~a~~~~g~~l~d~riv~~GAGsAg~gia~~l~~~-----------~~~~i~~~D~~GLi~~~r~~~ 69 (222)
T d1vl6a1 1 DQQGTAVVVSAAFLNALKLTEKKIEEVKVVVNGIGAAGYNIVKFLLDL-----------GVKNVVAVDRKGILNENDPET 69 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCTTTCEEEEECCSHHHHHHHHHHHHH-----------TCCEEEEEETTEECCTTSGGG
T ss_pred CCchHHHHHHHHHHHHHHHhCCChhhcEEEEEChHHHHHHHHHHHHHh-----------cccceEeecceeEEEcCcccc
Confidence 899999999999999999999999999999999999999999999753 5799999999999999996 4
Q ss_pred CCchhchhhccccCC---CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc
Q 008629 353 SLQHFKKPWAHEHEP---VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT 429 (559)
Q Consensus 353 ~l~~~k~~fA~~~~~---~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~ 429 (559)
.++++|++|++..+. ..+|.++|+. +|+++|+|+ +|+|++|++++| |+|||||||||||+ ||++++|
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~l~~~l~g--~~~~~g~~~-~~~~~~e~m~~~---~~rPIIFpLSNPt~--~~e~~~a-- 139 (222)
T d1vl6a1 70 CLNEYHLEIARITNPERLSGDLETALEG--ADFFIGVSR-GNILKPEWIKKM---SRKPVIFALANPVP--EIDPELA-- 139 (222)
T ss_dssp CSSHHHHHHHHTSCTTCCCSCHHHHHTT--CSEEEECSC-SSCSCHHHHTTS---CSSCEEEECCSSSC--SSCHHHH--
T ss_pred cccHHHHHHHhhhcchhhhcchHhhccC--cceeccccc-cccccHHHHhhc---CCCCEEEecCCCcc--chhhhhh--
Confidence 699999999986433 4689999985 899999997 779999876666 69999999999995 5556655
Q ss_pred ccCCcEEEeeCCCCCCceeCCeeeCccCccccccchhhHHHHHHhCCcccCHHHHHHHHHHHHhccCccccCCCcccCCC
Q 008629 430 WSKGRAIFASGSPFDPFEYNGKVFVPGQANNAYIFPGFGLGLVISGAIRVHDDMLLAASEALAKQVTEENFEKGLIYPPF 509 (559)
Q Consensus 430 wt~G~aifAsGSPF~pv~~~G~~~~p~Q~NN~yiFPGlglG~l~~~a~~Itd~m~~aAA~aLA~~v~~~~~~~~~l~P~~ 509 (559)
||+|+|||||||||. ||||||+|||||||||+++++++ |||+||++||++||++++++ +++|||++
T Consensus 140 ~~~G~ai~AtGsp~~----------p~Q~NN~yiFPGiglGal~~~ar-itd~m~~aAA~alA~~~~~~---~~~i~P~~ 205 (222)
T d1vl6a1 140 REAGAFIVATGRSDH----------PNQVNNLLAFPGIMKGAVEKRSK-ITKNMLLSAVEAIARSCEPE---PERIIPEA 205 (222)
T ss_dssp HHTTCSEEEESCTTS----------SSBCCGGGTHHHHHHHHHHHCSC-CCHHHHHHHHHHHHHTSCCB---TTBSSCCT
T ss_pred eeccceEEecCCCCC----------CccCcceeecchHHHHHHHhccc-cchHHHHHHHHHHHhcCCCC---CCcccCCC
Confidence 889999999999864 69999999999999999999985 99999999999999999875 58999999
Q ss_pred CCccchHHHHHHHHHHHH
Q 008629 510 SNIRKISANIAANVAAKA 527 (559)
Q Consensus 510 ~~ir~vs~~VA~aVa~~A 527 (559)
+++| ||.+||.+|+++|
T Consensus 206 ~~~r-Vs~~VA~aVa~~A 222 (222)
T d1vl6a1 206 FDMK-VHLNVYTAVKGSA 222 (222)
T ss_dssp TCHH-HHHHHHHHHHHCC
T ss_pred CChh-HHHHHHHHHHhhC
Confidence 9987 9999999999875
|
| >d1vl6a2 c.58.1.3 (A:1-154) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Aminoacid dehydrogenase-like, N-terminal domain superfamily: Aminoacid dehydrogenase-like, N-terminal domain family: Malic enzyme N-domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=99.97 E-value=3.3e-32 Score=249.12 Aligned_cols=121 Identities=28% Similarity=0.506 Sum_probs=103.6
Q ss_pred ccCCcccchhhHHHHHHHhhhhcCCCcccccccCcchHHHHHhcCCCCCeeEEEEecCceecccCCCCCc-cccchhHHH
Q 008629 133 ELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPERSIQVIVVTDGERILGLGDLGCQ-GMGIPVGKL 211 (559)
Q Consensus 133 e~lpivYTPtVg~ac~~~s~i~r~p~Glyis~~d~g~i~~~l~nwp~~~v~viVVTDG~rILGLGDlG~~-GmgI~iGKl 211 (559)
+.|+++|||+|+++|+.+. ++| ...+ .|+.+.+.|+||||||+||||||+|+. |||+|+||+
T Consensus 26 ~dLslaYTPGVA~~c~~I~---~dp----------~~~~----~yT~k~N~VAVVtdGtaVLGLGniGp~AalPVMEGKa 88 (154)
T d1vl6a2 26 ETLSLLYTPGVADVARACA---EDP----------EKTY----VYTSRWNTVAVVSDGSAVLGLGNIGPYGALPVMEGKA 88 (154)
T ss_dssp HHHHHHSTTTHHHHHHHHH---HCG----------GGHH----HHSGGGGEEEEEECSTTBTTTBSCCHHHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHH---hCc----------hhhh----heeeeccEEEEEeCCceeecCCCccccccccHHHHHH
Confidence 5699999999999999954 444 4444 467777899999999999999999998 699999999
Q ss_pred HHHhHhcCCCCCc-----chhHhHHHHHHHHHHhhCCCeeeeeccCCCCcHHHHHHHHcC--CCCeeec
Q 008629 212 ALYTALGGIRPSA-----EYAELLDEFMSAVKQNYGEKVLIQFEDFANHNAFELLAKYGT--THLVFND 273 (559)
Q Consensus 212 ~LY~a~gGI~P~~-----~y~~~vdefv~av~~~fGp~~lIq~EDf~~~~Af~lL~ryr~--~~~~FnD 273 (559)
.||+.+||||.++ ..-+-+-++++++.+.||. ||+|||++|+||+|++|+++ +||||||
T Consensus 89 ~LfK~fa~iDa~Pi~l~~~d~~~iv~~v~~i~PtFgg---InLEDI~aP~CFeIe~~L~~~ldIPVfHD 154 (154)
T d1vl6a2 89 FLFKAFADIDAFPICLSESEEEKIISIVKSLEPSFGG---INLEDIGAPKCFRILQRLSEEMNIPVFHD 154 (154)
T ss_dssp HHHHHHHCCEEEEEECSCCCHHHHHHHHHHTGGGCSE---EEECSCCTTHHHHHHHHHHHHCSSCEEEH
T ss_pred HHHHHhcCCCceeeeccccChHHHHHHHHHhcccccc---eehhhhcCchhhHHHHHHHHHCCCCCcCC
Confidence 9999999999999 2222344466666789999 99999999999999999974 8999998
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.20 E-value=3.7e-06 Score=75.87 Aligned_cols=121 Identities=19% Similarity=0.343 Sum_probs=87.5
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+|.-+|+-|++=-|.+.-| .|++.+|+|+|||.+|..+++.|... |. ++++++.+. ..| ..
T Consensus 2 ~g~vSv~~aAv~la~~~~~-~l~~~~ilviGaG~~g~~v~~~L~~~-----g~------~~i~v~nRt----~~k---a~ 62 (159)
T d1gpja2 2 EGAVSIGSAAVELAERELG-SLHDKTVLVVGAGEMGKTVAKSLVDR-----GV------RAVLVANRT----YER---AV 62 (159)
T ss_dssp CSCCSHHHHHHHHHHHHHS-CCTTCEEEEESCCHHHHHHHHHHHHH-----CC------SEEEEECSS----HHH---HH
T ss_pred CCcccHHHHHHHHHHHHhC-CcccCeEEEECCCHHHHHHHHHHHhc-----CC------cEEEEEcCc----HHH---HH
Confidence 5777788888777777776 79999999999999999998888763 64 678877653 111 22
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHHc--CCCCc-EEEecCCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMAS--FNEKP-LILALSNPT 417 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma~--~~erP-IIFaLSNPt 417 (559)
...+.|--...+..+|.+.+.. .|++|-+++.+ .+++++.++.+.+ ...+| +|+=||.|-
T Consensus 63 ~l~~~~~~~~~~~~~~~~~l~~--~Divi~atss~~~ii~~~~i~~~~~~r~~~~~~~iiDlavPr 126 (159)
T d1gpja2 63 ELARDLGGEAVRFDELVDHLAR--SDVVVSATAAPHPVIHVDDVREALRKRDRRSPILIIDIANPR 126 (159)
T ss_dssp HHHHHHTCEECCGGGHHHHHHT--CSEEEECCSSSSCCBCHHHHHHHHHHCSSCCCEEEEECCSSC
T ss_pred HHHHhhhcccccchhHHHHhcc--CCEEEEecCCCCccccHhhhHHHHHhcccCCCeEEEeecCCC
Confidence 2333332223445688888885 99999887655 5899999987653 23577 788899995
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00063 Score=61.33 Aligned_cols=90 Identities=24% Similarity=0.313 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
.|++.+++-.|.++++.+++|+|||.||-+|+-.+.. .|. ++|+++++. .++.+.+....++|..
T Consensus 3 ~Gf~~~l~~~~~~l~~k~vlIlGaGGaarai~~al~~-----~g~------~~i~i~nR~----~~~~~~~~~l~~~~~~ 67 (182)
T d1vi2a1 3 TGHIRAIKESGFDIKGKTMVLLGAGGASTAIGAQGAI-----EGL------KEIKLFNRR----DEFFDKALAFAQRVNE 67 (182)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEECS----STTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcCCCEEEEECCcHHHHHHHHHHhh-----cCC------ceEeeeccc----hHHHHHHHHHHHHHHh
Confidence 5889999999999999999999999888777655554 364 789999974 3322211111112211
Q ss_pred c---------cCCCCCHHHHhcccCCcEEEeccCCC
Q 008629 364 E---------HEPVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 364 ~---------~~~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
. ..+...+.+.+. .+|++|=++..|
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~--~~diiIN~Tp~G 101 (182)
T d1vi2a1 68 NTDCVVTVTDLADQQAFAEALA--SADILTNGTKVG 101 (182)
T ss_dssp HSSCEEEEEETTCHHHHHHHHH--TCSEEEECSSTT
T ss_pred hcCcceEeeecccccchhhhhc--ccceeccccCCc
Confidence 1 111123555554 499999887754
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=96.18 E-value=0.0023 Score=58.36 Aligned_cols=94 Identities=18% Similarity=0.261 Sum_probs=66.8
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc----CCCCCHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH----EPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~----~~~~~L~e 373 (559)
+--|++|+|||-||..-++.... .| .+++.+|.+ .+.+...+..|.... .....|.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~-----lG-------A~V~~~D~~-------~~~l~~l~~~~~~~~~~~~~~~~~l~~ 91 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVG-----LG-------AQVQIFDIN-------VERLSYLETLFGSRVELLYSNSAEIET 91 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEEESC-------HHHHHHHHHHHGGGSEEEECCHHHHHH
T ss_pred CCcEEEEECCChHHHHHHHHHhh-----CC-------CEEEEEeCc-------HHHHHHHHHhhcccceeehhhhhhHHH
Confidence 46899999999999888776654 35 468999974 222444444454321 11236889
Q ss_pred HhcccCCcEEEeccCCC-----CCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 374 AVKVIKPTILIGSSGVG-----RTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~-----g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
.++. .|++||+--.+ -++|+|+|+.|. +.-+|.=+|-
T Consensus 92 ~~~~--aDivI~aalipG~~aP~lIt~~mv~~Mk---~GSVIVDvai 133 (168)
T d1pjca1 92 AVAE--ADLLIGAVLVPGRRAPILVPASLVEQMR---TGSVIVDVAV 133 (168)
T ss_dssp HHHT--CSEEEECCCCTTSSCCCCBCHHHHTTSC---TTCEEEETTC
T ss_pred hhcc--CcEEEEeeecCCcccCeeecHHHHhhcC---CCcEEEEeec
Confidence 9985 99999997655 479999999997 6778866554
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=95.25 E-value=0.011 Score=56.22 Aligned_cols=126 Identities=17% Similarity=0.158 Sum_probs=84.1
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCC--
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSL-- 354 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l-- 354 (559)
.||-=+..++-.+++..+.+|++.||+|-|.|..|...|++|.+ .|. +=+-+-|++|-|+...+-+.
T Consensus 9 ATg~Gv~~~~~~~~~~~~~~l~g~~v~IqGfGnVG~~~a~~L~~-----~Ga------kvv~vsD~~g~i~~~~Gld~~~ 77 (242)
T d1v9la1 9 ATGFGVAVATREMAKKLWGGIEGKTVAIQGMGNVGRWTAYWLEK-----MGA------KVIAVSDINGVAYRKEGLNVEL 77 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCTTCEEEEECCSHHHHHHHHHHHT-----TTC------EEEEEECSSCEEECTTCCCTHH
T ss_pred hhhHHHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHH-----cCC------eEEEeecccccccccccccHHH
Confidence 45555666777888888999999999999999999999999975 364 44668999999887643112
Q ss_pred -chhchh-------hccccCC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 355 -QHFKKP-------WAHEHEP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 355 -~~~k~~-------fA~~~~~--~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
..++.. +....+. .-.-.+.+-.++.||||=++. ++.+|++.++.|. -+ +|.--+| |++
T Consensus 78 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~DIliPcA~-~~~I~~~~a~~i~---ak-~IvegAN~p~t 147 (242)
T d1v9la1 78 IQKNKGLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPAAI-ENVIRGDNAGLVK---AR-LVVEGANGPTT 147 (242)
T ss_dssp HHHTTTSCHHHHHHHHHHTSCCCCCSSTTGGGGCCCSEEEECSC-SSCBCTTTTTTCC---CS-EEECCSSSCBC
T ss_pred HHHHhhcchhhHHHhhhhccCceEeeCcchhccccccEEeecch-hccccHHHHHhcc---cC-EEEecCCCCCC
Confidence 112211 1111111 111123355578999998876 5699999988763 34 5554554 873
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=95.06 E-value=0.063 Score=49.42 Aligned_cols=113 Identities=20% Similarity=0.220 Sum_probs=80.1
Q ss_pred chhHHHHHHHHHHHHHhCC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~-~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.||-=+..++-++++..|. +|++.||+|-|-|..|..+|+.|.+. |. +++.+|.+. +.+.
T Consensus 4 ~Ta~Gv~~~~~~~~~~~g~~~L~gk~v~IqG~G~VG~~~A~~L~~~-----Ga-------kvvv~d~d~-------~~~~ 64 (201)
T d1c1da1 4 TTAVGVFEAMKATVAHRGLGSLDGLTVLVQGLGAVGGSLASLAAEA-----GA-------QLLVADTDT-------ERVA 64 (201)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCH-------HHHH
T ss_pred chHHHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEEecchH-------HHHH
Confidence 4666677788888888886 79999999999999999999998763 63 577777641 1122
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
.....- ...-+..|+. .++.||||=+.. ++.+|++.++.|. -.+|.--+| |++
T Consensus 65 ~~~~~g----~~~~~~~~~~-~~~~DI~iPcA~-~~~I~~~~a~~i~----ak~i~e~AN~p~~ 118 (201)
T d1c1da1 65 HAVALG----HTAVALEDVL-STPCDVFAPCAM-GGVITTEVARTLD----CSVVAGAANNVIA 118 (201)
T ss_dssp HHHHTT----CEECCGGGGG-GCCCSEEEECSC-SCCBCHHHHHHCC----CSEECCSCTTCBC
T ss_pred HHHhhc----ccccCccccc-cccceeeecccc-cccccHHHHhhhh----hheeeccCCCCcc
Confidence 221111 1122455555 457899997755 7799999999983 468888887 763
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=95.06 E-value=0.012 Score=52.15 Aligned_cols=87 Identities=18% Similarity=0.320 Sum_probs=56.1
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH 363 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~ 363 (559)
-|++.+++..|..+++.+|+|+|||.|+-+|+-.|.+ .|. +|+++++. .+|.+ ...+.|..
T Consensus 3 ~Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~al~~-----~g~-------~i~I~nRt----~~ka~---~l~~~~~~ 63 (170)
T d1nyta1 3 VGLLSDLERLSFIRPGLRILLIGAGGASRGVLLPLLS-----LDC-------AVTITNRT----VSRAE---ELAKLFAH 63 (170)
T ss_dssp HHHHHHHHHHTCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS----HHHHH---HHHHHTGG
T ss_pred hHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHhcc-----cce-------EEEeccch----HHHHH---HHHHHHhh
Confidence 4889999999999999999999999999888776644 353 48888763 33222 22222222
Q ss_pred ccC-CCCCHHHHhcccCCcEEEeccCCC
Q 008629 364 EHE-PVNNLLDAVKVIKPTILIGSSGVG 390 (559)
Q Consensus 364 ~~~-~~~~L~e~V~~vkPtvLIG~S~~~ 390 (559)
... ..-++.+ ....+.|++|=++..|
T Consensus 64 ~~~~~~~~~~~-~~~~~~dliIN~Tp~G 90 (170)
T d1nyta1 64 TGSIQALSMDE-LEGHEFDLIINATSSG 90 (170)
T ss_dssp GSSEEECCSGG-GTTCCCSEEEECCSCG
T ss_pred ccccccccccc-ccccccceeecccccC
Confidence 110 0112222 2334689999887765
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=95.01 E-value=0.024 Score=49.88 Aligned_cols=105 Identities=18% Similarity=0.315 Sum_probs=65.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-CccccCCcCCCchhchhhcccc---CCCCCHHH
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH---EPVNNLLD 373 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLi~~~R~~~l~~~k~~fA~~~---~~~~~L~e 373 (559)
+..||.|+|||.-|.-+|-+|.. .|+ .+++|+|.+ +++... ..+|.+.. .+.... ....+.++
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~-----~~~------~el~L~D~~~~~~~g~-a~Dl~~~~-~~~~~~~~~~~~~~~~~ 72 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCAL-----REL------ADVVLYDVVKGMPEGK-ALDLSHVT-SVVDTNVSVRAEYSYEA 72 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----HTC------CEEEEECSSSSHHHHH-HHHHHHHH-HHTTCCCCEEEECSHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHh-----CCC------ceEEEEEeccccchhH-HHHHhhhc-cccCCeeEEeccCchhh
Confidence 45799999999988777765543 366 369999954 211100 00122211 111111 11245778
Q ss_pred HhcccCCcEEEeccCCCCC-------------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 374 AVKVIKPTILIGSSGVGRT-------------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~-------------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+++. .|++|=+.+.+.. .-+++++.+.+++..-+|+-.|||-
T Consensus 73 ~~~~--adiVvitag~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivsNPv 133 (154)
T d1pzga1 73 ALTG--ADCVIVTAGLTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVTNPL 133 (154)
T ss_dssp HHTT--CSEEEECCSCSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECCSSH
T ss_pred hhcC--CCeEEEecccccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeCCcH
Confidence 8886 9999855544322 2357788888999999999999998
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=94.99 E-value=0.1 Score=49.05 Aligned_cols=122 Identities=18% Similarity=0.146 Sum_probs=84.6
Q ss_pred hhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh
Q 008629 278 TASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF 357 (559)
Q Consensus 278 TaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~ 357 (559)
||-=+.-++-.+++..|.+|++.||+|-|.|..|...|+.|.+. .|. +-+-+.|++|-|+... .++..
T Consensus 10 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqG~GnVG~~~a~~L~~e----~Ga------~vv~vsd~~G~i~~~~--Gld~~ 77 (234)
T d1b26a1 10 TGRGVKVCAGLAMDVLGIDPKKATVAVQGFGNVGQFAALLISQE----LGS------KVVAVSDSRGGIYNPE--GFDVE 77 (234)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCEEEEECCSHHHHHHHHHHHHH----HCC------EEEEEEETTEEEECTT--CCCHH
T ss_pred hhHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHh----cCC------ceEEeecCCCcEEecc--ccchH
Confidence 44444456667888899999999999999999999999988653 253 4566889999988754 34332
Q ss_pred chhhcc-cc------CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 358 KKPWAH-EH------EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 358 k~~fA~-~~------~~--~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.....+ .. .. .-+-.+ +-.++.||||=++ .++.+|++.++.+. -.+|.--+|.-
T Consensus 78 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~DI~~PcA-~~~~I~~~~a~~l~----~~~I~e~AN~p 140 (234)
T d1b26a1 78 ELIRYKKEHGTVVTYPKGERITNEE-LLELDVDILVPAA-LEGAIHAGNAERIK----AKAVVEGANGP 140 (234)
T ss_dssp HHHHHHHHSSCSTTCSSCEEECHHH-HHTSCCSEEEECS-CTTCBCHHHHTTCC----CSEEECCSSSC
T ss_pred HHHHHHHhhcceeccccceeecccc-ccccccceeecch-hcccccHHHHHHhh----hceEeecCCCC
Confidence 211111 10 00 113444 4457999999764 47799999999884 56999999933
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=94.98 E-value=0.023 Score=50.83 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=69.7
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
|+-.+..+++....+..|.+|+++++||.|| |..|..+|+.+.+ .|. +++++|++ .++ +.
T Consensus 1 g~~~~~~~~v~~~~~~~~~~l~gK~vlItGasgGIG~~ia~~la~-----~G~-------~V~~~~r~----~~~---~~ 61 (191)
T d1luaa1 1 GSNTTAAAGVALVVKAAGGSVKGKKAVVLAGTGPVGMRSAALLAG-----EGA-------EVVLCGRK----LDK---AQ 61 (191)
T ss_dssp GHHHHHHHHHHHHHHHTTSCCTTCEEEEETTTSHHHHHHHHHHHH-----TTC-------EEEEEESS----HHH---HH
T ss_pred CCCccHHHHHHHHHHHcCCCCCCCEEEEECCCHHHHHHHHHHHHh-----hcc-------chhhcccc----hHH---HH
Confidence 4445677888999999999999999999995 7778888877765 363 68888875 111 22
Q ss_pred hhchhhcc---------ccCCCCCHHHHhcccCCcEEEeccCCC-CCCCHHHHHHHH
Q 008629 356 HFKKPWAH---------EHEPVNNLLDAVKVIKPTILIGSSGVG-RTFTKEVIEAMA 402 (559)
Q Consensus 356 ~~k~~fA~---------~~~~~~~L~e~V~~vkPtvLIG~S~~~-g~Ft~evv~~Ma 402 (559)
.....+.. +.....++.+++.. .|+||-..+.+ ...++|.++.+.
T Consensus 62 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--iDilin~Ag~g~~~~~~e~~~~~~ 116 (191)
T d1luaa1 62 AAADSVNKRFKVNVTAAETADDASRAEAVKG--AHFVFTAGAIGLELLPQAAWQNES 116 (191)
T ss_dssp HHHHHHHHHHTCCCEEEECCSHHHHHHHTTT--CSEEEECCCTTCCCBCHHHHHTCT
T ss_pred HHHHHHHhccchhhhhhhcccHHHHHHHhcC--cCeeeecCccccccCCHHHHHhhh
Confidence 21111111 11112357777875 79999877653 356777777554
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.81 E-value=0.047 Score=49.13 Aligned_cols=122 Identities=18% Similarity=0.222 Sum_probs=87.0
Q ss_pred cCCcchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC
Q 008629 273 DDIQGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD 352 (559)
Q Consensus 273 DDiQGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~ 352 (559)
|..+||+--++-|++ |.|+..|...+++|+|-|--|-|+|+-+... |. +++++|.+ ..+
T Consensus 1 dN~yg~g~S~~~~~~---r~t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~-----G~-------~V~v~e~d----p~~-- 59 (163)
T d1li4a1 1 DNLYGCRESLIDGIK---RATDVMIAGKVAVVAGYGDVGKGCAQALRGF-----GA-------RVIITEID----PIN-- 59 (163)
T ss_dssp HHHHHHHHHHHHHHH---HHHCCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC----HHH--
T ss_pred CCcccchhhHHHHHH---HHhCceecCCEEEEeccccccHHHHHHHHhC-----CC-------eeEeeecc----cch--
Confidence 345678777776666 7899999999999999999999999988653 63 67777764 111
Q ss_pred CCchhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC-CCCCCCHHHHh
Q 008629 353 SLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT-SQSECTAEEAY 428 (559)
Q Consensus 353 ~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt-~~~EctpedA~ 428 (559)
.|+.+- +.-...++.|+++. .|++|-+++...+.+.|.++.|. .-.|+ +|=. ..-|+.-+...
T Consensus 60 al~A~~-----dG~~v~~~~~a~~~--adivvtaTGn~~vI~~eh~~~MK----dgaIL--~N~Ghfd~EId~~~L~ 123 (163)
T d1li4a1 60 ALQAAM-----EGYEVTTMDEACQE--GNIFVTTTGCIDIILGRHFEQMK----DDAIV--CNIGHFDVEIDVKWLN 123 (163)
T ss_dssp HHHHHH-----TTCEECCHHHHTTT--CSEEEECSSCSCSBCHHHHTTCC----TTEEE--EECSSSTTSBCHHHHH
T ss_pred hHHhhc-----CceEeeehhhhhhh--ccEEEecCCCccchhHHHHHhcc----CCeEE--EEeccccceecHHHHh
Confidence 122221 22223579999986 99999999988899999999995 33443 3432 34677766553
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.63 E-value=0.01 Score=53.05 Aligned_cols=106 Identities=14% Similarity=0.128 Sum_probs=65.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCC--cCCCch-hchhhccccC-----CCCCH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSR--KDSLQH-FKKPWAHEHE-----PVNNL 371 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R--~~~l~~-~k~~fA~~~~-----~~~~L 371 (559)
.||.|+|||+.|.+.+= ...+.....+ ....|+|+|.+ +++ .+.+.. +.+.++.... ...+.
T Consensus 2 ~KI~iIGaGs~~~~~~~--~~l~~~~~~~----~~~eI~L~Di~----e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~ 71 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELV--EGLIKRYHEL----PVGELWLVDIP----EGKEKLEIVGALAKRMVEKAGVPIEIHLTLDR 71 (169)
T ss_dssp EEEEEETTTCTTHHHHH--HHHHHTTTTC----CEEEEEEECCG----GGHHHHHHHHHHHHHHHHHTTCCCEEEEESCH
T ss_pred cEEEEECCChhhHHHHH--HHHHHhcccc----CCCEEEEEcCC----ccHHHHHHHHHHHHHHHHhcCCCceeeecCCc
Confidence 58999999998764322 1111111122 12589999975 221 111222 2222322111 12578
Q ss_pred HHHhcccCCcEEEeccCCCCCC----------------------------------CHHHHHHHHcCCCCcEEEecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVGRTF----------------------------------TKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~g~F----------------------------------t~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.++++. .|++|=+.+.++.- =+|+++.|.++|+..+++=.|||-
T Consensus 72 ~~al~g--aDvVv~ta~~~~~~~~~r~~~i~~~~gi~~~~t~g~~~~~~~~~n~~i~~~i~~~i~~~~pda~~i~vtNPv 149 (169)
T d1s6ya1 72 RRALDG--ADFVTTQFRVGGLEARAKDERIPLKYGVIGQETNGPGGLFKGLRTIPVILDIIRDMEELCPDAWLINFTNPA 149 (169)
T ss_dssp HHHHTT--CSEEEECCCTTHHHHHHHHHHTGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred hhhcCC--CCEEEEccccCCCCCeehhhhhhhhcCceeccccCcchhhhccccHHHHHHHHHHHhhcCCCeEEEEeCChH
Confidence 899986 89999777766421 167889999999999999999996
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=94.54 E-value=0.018 Score=51.48 Aligned_cols=106 Identities=20% Similarity=0.281 Sum_probs=62.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhcccc--CCCCCHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHEH--EPVNNLLD 373 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~~--~~~~~L~e 373 (559)
-||.|+|||+.|...+ ++..+.+..++ +-..|.|+|.+ .+|.+ .+.+....+-.+. ....++.|
T Consensus 3 mKI~iIGaGsvg~t~~--~~~~l~~~~~l----~~~eivL~Did----~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~e 72 (171)
T d1obba1 3 VKIGIIGAGSAVFSLR--LVSDLCKTPGL----SGSTVTLMDID----EERLDAILTIAKKYVEEVGADLKFEKTMNLDD 72 (171)
T ss_dssp CEEEEETTTCHHHHHH--HHHHHHTCGGG----TTCEEEEECSC----HHHHHHHHHHHHHHHHHTTCCCEEEEESCHHH
T ss_pred cEEEEECCCHHHhHHH--HHHHHHhcccc----CCCEEEEEeCC----chHHHHHHHHHHHHHHhcCCCeEEEEeCChhh
Confidence 5999999999986643 22222221222 23589999986 22211 0111111111110 11257999
Q ss_pred HhcccCCcEEEeccCC--------------------------------CCCC--------CHHHHHHHHcCCCCcEEEec
Q 008629 374 AVKVIKPTILIGSSGV--------------------------------GRTF--------TKEVIEAMASFNEKPLILAL 413 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~--------------------------------~g~F--------t~evv~~Ma~~~erPIIFaL 413 (559)
+++. +|+.|=..+. +|.| -+++++.+.++|+.-+++=.
T Consensus 73 aL~d--ad~Vv~~~~~g~~~~~~~~~~i~~~~g~~~~~~~~~~~~~g~~~~~~~~rn~~i~~~i~~~i~~~~p~a~~i~~ 150 (171)
T d1obba1 73 VIID--ADFVINTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQA 150 (171)
T ss_dssp HHTT--CSEEEECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEEC
T ss_pred cccC--CCeEeeecccccccceeeehhcchhhhhccCCCccccCCCCCcceeeecchHHHHHHHHHHHHHHCcCeEEEEE
Confidence 9986 8888733222 2222 26788888999999999999
Q ss_pred CCCC
Q 008629 414 SNPT 417 (559)
Q Consensus 414 SNPt 417 (559)
|||-
T Consensus 151 TNPv 154 (171)
T d1obba1 151 ANPI 154 (171)
T ss_dssp SSCH
T ss_pred CChH
Confidence 9997
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.13 E-value=0.03 Score=48.88 Aligned_cols=102 Identities=21% Similarity=0.232 Sum_probs=67.1
Q ss_pred eEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 008629 301 RFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 377 (559)
||.|+|| |.-|..+|-+|.. .|+ .+.+.|+|.+-.- ....++. |-..|.... -...+..|+++.
T Consensus 2 Kv~IiGA~G~VG~~~A~~l~~-----~~~-----~~elvLiDi~~~~--~~a~Dl~-~~~~~~~~~~~~~~~~~~~~~~~ 68 (144)
T d1mlda1 2 KVAVLGASGGIGQPLSLLLKN-----SPL-----VSRLTLYDIAHTP--GVAADLS-HIETRATVKGYLGPEQLPDCLKG 68 (144)
T ss_dssp EEEEETTTSTTHHHHHHHHHT-----CTT-----CSEEEEEESSSHH--HHHHHHT-TSSSSCEEEEEESGGGHHHHHTT
T ss_pred eEEEECCCChHHHHHHHHHHh-----CCc-----cceEEEEeccccc--hhhHHHh-hhhhhcCCCeEEcCCChHHHhCC
Confidence 8999997 9999999887754 466 3579999975311 1001132 122222211 112467888876
Q ss_pred cCCcEEEeccCC---CCC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGV---GRT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~---~g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+. +|- .-+++++++.+++...||+-.|||.
T Consensus 69 --aDivVitag~~~~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvtNPv 120 (144)
T d1mlda1 69 --CDVVVIPAGVPRKPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIISNPV 120 (144)
T ss_dssp --CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSCH
T ss_pred --CCEEEECCCcCCCCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch
Confidence 8999844443 332 2267888888999999999999998
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.04 E-value=0.082 Score=49.89 Aligned_cols=126 Identities=19% Similarity=0.191 Sum_probs=85.1
Q ss_pred chhHHHHHHHHHHHHHhCC-CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGG-TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~-~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.||-=+.-++..+++..|. +|++.||+|-|-|..|..+|+.|.+. .|. +-+-+.|++|-|+...+-+++
T Consensus 9 ATg~Gv~~~~~~~~~~~g~~~l~g~~v~IqGfGnVG~~~a~~L~~~----~G~------kvv~vsD~~g~i~~~~G~d~~ 78 (239)
T d1gtma1 9 ATARGASYTIREAAKVLGWDTLKGKTIAIQGYGNAGYYLAKIMSED----FGM------KVVAVSDSKGGIYNPDGLNAD 78 (239)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCSTTCEEEEECCSHHHHHHHHHHHHT----TCC------EEEEEECSSCEEEEEEEECHH
T ss_pred hhhHHHHHHHHHHHHHhCCCCcCCCEEEEECCCHHHHHHHHHHHHh----cCc------ceeeccccccceecCCcCCHH
Confidence 3555566677788888886 59999999999999999999988653 253 556788999988864321222
Q ss_pred hhchhhcccc-----CC--CCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 356 HFKKPWAHEH-----EP--VNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 356 ~~k~~fA~~~-----~~--~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
+..+.+.... +. .-+-.+.. .++.||||=++. ++..|++.++.+ .-.+|.--+| |++
T Consensus 79 ~l~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~DIl~PcA~-~~~I~~~~a~~i----~ak~I~e~AN~p~t 143 (239)
T d1gtma1 79 EVLKWKNEHGSVKDFPGATNITNEELL-ELEVDVLAPAAI-EEVITKKNADNI----KAKIVAEVANGPVT 143 (239)
T ss_dssp HHHHHHHHHSSSTTCTTSEEECHHHHH-HSCCSEEEECSC-SCCBCTTGGGGC----CCSEEECCSSSCBC
T ss_pred HHHHHHHhccccccCCCCeeecccccc-cccccEEeeccc-cccccHHHHHhc----cccEEEecCCCCCC
Confidence 2211111110 00 11344544 579999997776 679999998876 4568888888 663
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.76 Score=39.44 Aligned_cols=84 Identities=23% Similarity=0.239 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh
Q 008629 282 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 361 (559)
Q Consensus 282 ~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f 361 (559)
-+|-.+.|++..+.+. +++++|+|+|.-|+..+.++.. .|. ++++.+|++ + .+..+
T Consensus 11 pla~a~~a~~~~~~~~-gd~VlI~G~G~iG~~~~~~a~~-----~G~------~~Vi~~d~~----~--------~rl~~ 66 (171)
T d1pl8a2 11 PLSVGIHACRRGGVTL-GHKVLVCGAGPIGMVTLLVAKA-----MGA------AQVVVTDLS----A--------TRLSK 66 (171)
T ss_dssp HHHHHHHHHHHHTCCT-TCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEESC----H--------HHHHH
T ss_pred HHHHHHHHHHHhCCCC-CCEEEEECCCccHHHHHHHHHH-----cCC------ceEEeccCC----H--------HHHHH
Confidence 3666678888776543 5689999999999877655543 364 689988864 2 22333
Q ss_pred ccc-------cCCCCCHHHHhc------ccCCcEEEeccCC
Q 008629 362 AHE-------HEPVNNLLDAVK------VIKPTILIGSSGV 389 (559)
Q Consensus 362 A~~-------~~~~~~L~e~V~------~vkPtvLIG~S~~ 389 (559)
|++ .....+..+..+ ..++|+.|-+++.
T Consensus 67 a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~ 107 (171)
T d1pl8a2 67 AKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGA 107 (171)
T ss_dssp HHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCC
T ss_pred HHHhCCcccccccccccccccccccccCCCCceEEEeccCC
Confidence 332 112234555443 3478999998874
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=93.97 E-value=0.037 Score=48.38 Aligned_cols=105 Identities=13% Similarity=0.233 Sum_probs=63.4
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-CCCCCHHHHhcc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKV 377 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~ 377 (559)
..||.|+|||.-|..+|-.|+.. |+. ..+.|+|.+==..++..-+|.+.. .+.... ....+.++ ++.
T Consensus 5 ~~KI~IIGaG~VG~~~A~~l~~~-----~~~-----~elvL~D~~~~~~~g~a~Dl~~a~-~~~~~~~~~~~d~~~-~~~ 72 (146)
T d1ez4a1 5 HQKVVLVGDGAVGSSYAFAMAQQ-----GIA-----EEFVIVDVVKDRTKGDALDLEDAQ-AFTAPKKIYSGEYSD-CKD 72 (146)
T ss_dssp BCEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSHHHHHHHHHHHHGGG-GGSCCCEEEECCGGG-GTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhc-----CCC-----cEEEEeecccchhHHHHHHHhccc-cccCCceEeeccHHH-hcc
Confidence 56999999999999999888763 662 569999964100000000122111 111110 00134444 443
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+.. .-+++++.+.+++...||.-.|||.
T Consensus 73 --adivvitag~~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvtNPv 124 (146)
T d1ez4a1 73 --ADLVVITAGAPQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAANPV 124 (146)
T ss_dssp --CSEEEECCCC----------CHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred --ccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeCCcc
Confidence 8988866554421 1236778888999999999999998
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=93.97 E-value=0.018 Score=51.03 Aligned_cols=105 Identities=17% Similarity=0.164 Sum_probs=61.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccc---cCCCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHE---HEPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~---~~~~~~L~e~V~~ 377 (559)
||.|+|||+.|...+=..+...... ..-..+.|+|.+ .+|.....+.....+.. ..-..+..|+++.
T Consensus 2 KIaiIGaGs~g~~~~~~~l~~~~~~------~~~~el~L~Did----~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~ 71 (162)
T d1up7a1 2 RIAVIGGGSSYTPELVKGLLDISED------VRIDEVIFYDID----EEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVD 71 (162)
T ss_dssp EEEEETTTCTTHHHHHHHHHHHTTT------SCCCEEEEECSC----HHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTT
T ss_pred EEEEECCCHHHHHHHHHHHHhcccc------cCccEEEEEecC----cHHHHHHHHHHHhhhccCceEEEecCcccccCC
Confidence 7999999998876664433322111 112579999975 22211011111111111 1112578899986
Q ss_pred cCCcEEEeccCCC---------------CCCCHH------------------HHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---------------RTFTKE------------------VIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---------------g~Ft~e------------------vv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |.+..+ .+..|.++|+.-+++=.|||.
T Consensus 72 --aDvVVita~~~~~~~~~r~~~i~~~~~i~~~~~~g~~g~~~~~r~~~~~~~i~~~~~~~p~a~~i~vtNPv 142 (162)
T d1up7a1 72 --AKYVIFQFRPGGLKGRENDEGIPLKYGLIGQETTGVGGFSAALRAFPIVEEYVDTVRKTSNATIVNFTNPS 142 (162)
T ss_dssp --CSEEEECCCTTHHHHHHHHHHGGGGGTCCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECSSSH
T ss_pred --CCEEEEecccCCCCCcchHhhhhhhcCeeeeeccCcchhhhhhhhhHHHHHHhhhhccCCCeEEEEeCCHH
Confidence 89998777765 333322 134566789999999999997
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=93.78 E-value=0.15 Score=45.72 Aligned_cols=119 Identities=16% Similarity=0.169 Sum_probs=85.2
Q ss_pred cchhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 276 QGTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 276 QGTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
.||+--++-|++ |.|+.-|...++|++|=|--|-|+|.-+... | -++++++.+
T Consensus 3 yg~g~S~~d~i~---r~t~~~laGk~vvV~GYG~vGrG~A~~~rg~-----G-------a~V~V~E~D------------ 55 (163)
T d1v8ba1 3 YGCRHSLPDGLM---RATDFLISGKIVVICGYGDVGKGCASSMKGL-----G-------ARVYITEID------------ 55 (163)
T ss_dssp HHHHHHHHHHHH---HHHCCCCTTSEEEEECCSHHHHHHHHHHHHH-----T-------CEEEEECSC------------
T ss_pred cccchhHHHHHH---HHhCceecCCEEEEecccccchhHHHHHHhC-----C-------CEEEEEecC------------
Confidence 366766666665 7899999999999999999999999988764 5 367766553
Q ss_pred hhchhhcc-ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCCC-CCCCCHHHHhc
Q 008629 356 HFKKPWAH-EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPTS-QSECTAEEAYT 429 (559)
Q Consensus 356 ~~k~~fA~-~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~-~~EctpedA~~ 429 (559)
|.+.-=|+ +.-+..++.|+++. .|++|-+++..++.+.+.++.|. +.-|+. |=.+ .-|+.-+...+
T Consensus 56 Pi~alqA~mdGf~v~~~~~a~~~--aDi~vTaTGn~~vI~~~h~~~MK---dgaIl~---N~GHfd~EIdv~~L~~ 123 (163)
T d1v8ba1 56 PICAIQAVMEGFNVVTLDEIVDK--GDFFITCTGNVDVIKLEHLLKMK---NNAVVG---NIGHFDDEIQVNELFN 123 (163)
T ss_dssp HHHHHHHHTTTCEECCHHHHTTT--CSEEEECCSSSSSBCHHHHTTCC---TTCEEE---ECSSTTTSBCHHHHHT
T ss_pred chhhHHHHhcCCccCchhHcccc--CcEEEEcCCCCccccHHHHHHhh---CCeEEE---eccccchhhhhHHHHh
Confidence 22211122 22234689999996 99999999999999999999997 444543 3221 24666655544
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=93.69 E-value=0.02 Score=51.02 Aligned_cols=48 Identities=25% Similarity=0.387 Sum_probs=39.3
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|++.+++-.+..+++.+++|+|||.|+-.|+..|.+ | .++|+++++.
T Consensus 3 ~Gf~~~l~~~~~~~~~k~vlIlGaGGaarai~~aL~~------~------~~~i~I~nR~ 50 (171)
T d1p77a1 3 IGLVTDLQRLNWLRPNQHVLILGAGGATKGVLLPLLQ------A------QQNIVLANRT 50 (171)
T ss_dssp HHHHHHHHHTTCCCTTCEEEEECCSHHHHTTHHHHHH------T------TCEEEEEESS
T ss_pred HHHHHHHHHcCCCCCCCEEEEECCcHHHHHHHHHHcc------c------Cceeeeccch
Confidence 4889999988999999999999999998888765543 2 2579988774
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.66 E-value=0.073 Score=48.71 Aligned_cols=98 Identities=18% Similarity=0.265 Sum_probs=60.5
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchh-----------------chh
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHF-----------------KKP 360 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~-----------------k~~ 360 (559)
.--++||+|||-||.--++.-.. .| .+++.+|.+ ..|.+.++.. ...
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~-----lG-------A~V~v~D~~----~~~~~~l~~l~~~~i~~~~~~~~~~~~~~g 91 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKR-----LG-------AVVMATDVR----AATKEQVESLGGKFITVDDEAMKTAETAGG 91 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHH-----TT-------CEEEEECSC----STTHHHHHHTTCEECCC-------------
T ss_pred CCcEEEEEcCcHHHHHHHHHHHH-----cC-------CEEEEEecc----HHHHHHHHHhhcceEEEecccccccccccc
Confidence 45799999999999866555433 35 478888874 2221111111 112
Q ss_pred hccccC-CC-----CCHHHHhcccCCcEEEeccCCCC-----CCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 361 WAHEHE-PV-----NNLLDAVKVIKPTILIGSSGVGR-----TFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 361 fA~~~~-~~-----~~L~e~V~~vkPtvLIG~S~~~g-----~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
||++.. +. ..|.+.++. .|++||+.-.+| ++|+++|+.|. +--+|.=||--
T Consensus 92 yA~~~s~~~~~~~~~~l~~~l~~--aDlVI~talipG~~aP~lit~~mv~~Mk---~GSVIVDvaid 153 (183)
T d1l7da1 92 YAKEMGEEFRKKQAEAVLKELVK--TDIAITTALIPGKPAPVLITEEMVTKMK---PGSVIIDLAVE 153 (183)
T ss_dssp ----------CCHHHHHHHHHTT--CSEEEECCCCTTSCCCCCSCHHHHTTSC---TTCEEEETTGG
T ss_pred chhhcCHHHHHHHHHHHHHHHHh--hhhheeeeecCCcccceeehHHHHHhcC---CCcEEEEEeec
Confidence 333211 11 236666764 999999976654 69999999997 77899877753
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=93.61 E-value=0.4 Score=42.73 Aligned_cols=108 Identities=17% Similarity=0.171 Sum_probs=74.2
Q ss_pred hHHHHHHHHHHHHH------------------hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEE
Q 008629 279 ASVVLAGVVAALKL------------------IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLV 340 (559)
Q Consensus 279 aaV~LAgll~Alr~------------------~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lv 340 (559)
|=-+++.+|+.+|- .+..|.+++|.|+|.|..|..+|+++... |+ +++.+
T Consensus 6 AE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~f-----g~-------~v~~~ 73 (188)
T d1sc6a1 6 AELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESL-----GM-------YVYFY 73 (188)
T ss_dssp HHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEE
T ss_pred HHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccc-----cc-------eEeec
Confidence 34466777776653 34568999999999999999999987543 54 57778
Q ss_pred cccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCCcEEEec-c---CCCCCCCHHHHHHHHcCCCCcEEEecCCC
Q 008629 341 DSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKPTILIGS-S---GVGRTFTKEVIEAMASFNEKPLILALSNP 416 (559)
Q Consensus 341 D~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~-S---~~~g~Ft~evv~~Ma~~~erPIIFaLSNP 416 (559)
|+.. . ....+. ....+|.|.++. .|+++=. . ..-+.|+++.++.|. +.+++.=.|..
T Consensus 74 d~~~----~----~~~~~~------~~~~~l~ell~~--sDii~i~~plt~~T~~li~~~~l~~mk---~~a~lIN~aRG 134 (188)
T d1sc6a1 74 DIEN----K----LPLGNA------TQVQHLSDLLNM--SDVVSLHVPENPSTKNMMGAKEISLMK---PGSLLINASRG 134 (188)
T ss_dssp CSSC----C----CCCTTC------EECSCHHHHHHH--CSEEEECCCSSTTTTTCBCHHHHHHSC---TTEEEEECSCS
T ss_pred cccc----c----chhhhh------hhhhhHHHHHhh--ccceeecccCCcchhhhccHHHHhhCC---CCCEEEEcCcH
Confidence 7641 1 111110 112479999986 8888643 1 122799999999997 78899877664
Q ss_pred C
Q 008629 417 T 417 (559)
Q Consensus 417 t 417 (559)
.
T Consensus 135 ~ 135 (188)
T d1sc6a1 135 T 135 (188)
T ss_dssp S
T ss_pred H
Confidence 4
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=93.08 E-value=0.025 Score=49.57 Aligned_cols=101 Identities=15% Similarity=0.259 Sum_probs=61.7
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCc--C--CCchhchhhccccC-CCCCHHHH
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRK--D--SLQHFKKPWAHEHE-PVNNLLDA 374 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~--~--~l~~~k~~fA~~~~-~~~~L~e~ 374 (559)
.||.|+|||.-|..+|-.|+. .|+ ...+.|+|.+ +++. . +|.+....+-.+.. ...+. +.
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~-----~~~-----~~elvL~Di~----~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~-~~ 66 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIA-----QGV-----ADDYVFIDAN----EAKVKADQIDFQDAMANLEAHGNIVINDW-AA 66 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----HTC-----CSEEEEECSS----HHHHHHHHHHHHHHGGGSSSCCEEEESCG-GG
T ss_pred CeEEEECcCHHHHHHHHHHHh-----cCC-----CceEEEEecc----cchhhhHHHhhhccccccCCccceeccCH-HH
Confidence 589999999999998887765 265 2579999963 2221 0 13221111111100 01233 34
Q ss_pred hcccCCcEEEeccCCC-------CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 375 VKVIKPTILIGSSGVG-------RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 375 V~~vkPtvLIG~S~~~-------g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++. .|++|=+.+.+ |- +-+++.+.+.++++.+||+--|||.
T Consensus 67 l~~--adiVVitaG~~~~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPv 125 (146)
T d1hyha1 67 LAD--ADVVISTLGNIKLQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVISNPV 125 (146)
T ss_dssp GTT--CSEEEECCSCGGGTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECSSSH
T ss_pred hcc--ccEEEEeccccccccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEecCcH
Confidence 554 89888444421 11 2357788888999999999999998
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=93.01 E-value=0.066 Score=47.14 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=38.0
Q ss_pred HHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 285 GVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 285 gll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
|+..+++..+.+ ++.+|+|+|||.|+-+|+-.|.+ .|. ++|+++++.
T Consensus 4 G~~~~l~~~~~~-~~~~vlIlGaGGaarai~~aL~~-----~g~------~~I~I~nR~ 50 (167)
T d1npya1 4 AIVKLIEKYHLN-KNAKVIVHGSGGMAKAVVAAFKN-----SGF------EKLKIYARN 50 (167)
T ss_dssp HHHHHHHHTTCC-TTSCEEEECSSTTHHHHHHHHHH-----TTC------CCEEEECSC
T ss_pred HHHHHHHHcCCC-CCCeEEEECCCHHHHHHHHHHHH-----CCC------CEEEEeccc
Confidence 678889988887 78999999999999888766643 365 689988773
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=92.95 E-value=0.18 Score=43.19 Aligned_cols=99 Identities=20% Similarity=0.238 Sum_probs=61.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc---------hhhccccCCCCC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK---------KPWAHEHEPVNN 370 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k---------~~fA~~~~~~~~ 370 (559)
.||.|+|||..|.++|..|.+. |. +++++|+..--. +.+.... +.......-..+
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~-----G~-------~V~~~~r~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 65 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALK-----GQ-------SVLAWDIDAQRI----KEIQDRGAIIAEGPGLAGTAHPDLLTSD 65 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSCHHHH----HHHHHHTSEEEESSSCCEEECCSEEESC
T ss_pred CEEEEECccHHHHHHHHHHHHC-----CC-------EEEEEECCHHHH----HHHHHcCCCchhhhhhhhhhhhhhhhhh
Confidence 5899999999999999988763 63 688888741100 0010000 000000011247
Q ss_pred HHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCC-CCcEEEecCCCCC
Q 008629 371 LLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFN-EKPLILALSNPTS 418 (559)
Q Consensus 371 L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~-erPIIFaLSNPt~ 418 (559)
+.|+++. .|++|=+.- . -..+++++.++.+- +.-+|+-.+|...
T Consensus 66 ~~e~~~~--aD~iii~v~-~-~~~~~~~~~i~~~l~~~~~iv~~~g~~~ 110 (184)
T d1bg6a2 66 IGLAVKD--ADVILIVVP-A-IHHASIAANIASYISEGQLIILNPGATG 110 (184)
T ss_dssp HHHHHTT--CSEEEECSC-G-GGHHHHHHHHGGGCCTTCEEEESSCCSS
T ss_pred hHhHhcC--CCEEEEEEc-h-hHHHHHHHHhhhccCCCCEEEEeCCCCc
Confidence 9999996 888884432 2 35899999998763 4456666777654
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=92.90 E-value=0.027 Score=50.51 Aligned_cols=107 Identities=18% Similarity=0.290 Sum_probs=65.1
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcC----CCchhchhhccc--cCCCCCHH
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKD----SLQHFKKPWAHE--HEPVNNLL 372 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~----~l~~~k~~fA~~--~~~~~~L~ 372 (559)
.-||+|+|||+.|.. .++...+.+...+ .-+.|+|+|.+ ++|.+ .+.......-.+ .....+..
T Consensus 3 ~~KI~iIGaGsv~~~--~~~~~ll~~~~~l----~~~eivL~Did----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 72 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTP--GIVLMLLDHLEEF----PIRKLKLYDND----KERQDRIAGACDVFIREKAPDIEFAATTDPE 72 (167)
T ss_dssp CEEEEEECTTSSSHH--HHHHHHHHTTTTS----CEEEEEEECSC----HHHHHHHHHHHHHHHHHHCTTSEEEEESCHH
T ss_pred CceEEEECCChhhhH--HHHHHHHhhhhhc----CCCEEEEEcCC----hhHHHHHHHHHHHHHHHhCCCcceEecCChh
Confidence 468999999998543 3333333222222 13579999975 33211 011111110001 11125899
Q ss_pred HHhcccCCcEEEeccCCCCC----------------------------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 373 DAVKVIKPTILIGSSGVGRT----------------------------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~g~----------------------------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
|+++. .|++|=+.+.++. +=+|+++.|.++|+..+++-.|||.
T Consensus 73 eal~~--AD~Vvitag~~~~~g~~rd~~i~~~~Gi~~~~t~g~gg~~~~~r~i~ii~~i~~~i~~~~P~A~li~~TNPv 149 (167)
T d1u8xx1 73 EAFTD--VDFVMAHIRVGKYAMRALDEQIPLKYGVVGQETCGPGGIAYGMRSIGGVLEILDYMEKYSPDAWMLNYSNPA 149 (167)
T ss_dssp HHHSS--CSEEEECCCTTHHHHHHHHHHHHHTTTCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCSCH
T ss_pred hccCC--CCEEEECCCcCCCCceeHHHhhchhcCceeeccccCcchheehhhHHHHHHHHHHHHhhCCCeEEEEeCCHH
Confidence 99996 9999977665421 1147888899999999999999998
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=92.81 E-value=0.41 Score=45.41 Aligned_cols=125 Identities=21% Similarity=0.178 Sum_probs=84.9
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCch
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQH 356 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~ 356 (559)
.||-=+.-.+-.+++..+.+|++.||+|-|.|..|...|+.|.+. |. +=+-+-|++|-|+... .++.
T Consensus 14 ATG~Gv~~~~~~~~~~~~~~l~g~~v~IQGfGnVG~~~a~~L~e~-----Ga------kvvavsD~~G~i~~~~--Gld~ 80 (255)
T d1bgva1 14 ATGYGSVYYVEAVMKHENDTLVGKTVALAGFGNVAWGAAKKLAEL-----GA------KAVTLSGPDGYIYDPE--GITT 80 (255)
T ss_dssp HHHHHHHHHHHHHHHHTTCCSTTCEEEECCSSHHHHHHHHHHHHH-----TC------EEEEEEETTEEEECTT--CSCS
T ss_pred cchHHHHHHHHHHHHhCCCCCCCCEEEEECCCHHHHHHHHHHHHc-----CC------eEEEEecCCceEecCC--CCCH
Confidence 466666667778889999999999999999999999999999764 64 4567889999998764 3432
Q ss_pred h-chhhcccc--CCCCCHHH-------------HhcccCCcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCC-CC
Q 008629 357 F-KKPWAHEH--EPVNNLLD-------------AVKVIKPTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSN-PT 417 (559)
Q Consensus 357 ~-k~~fA~~~--~~~~~L~e-------------~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSN-Pt 417 (559)
. ...|..+. ....++.+ -+=.++.||||=+ +.++..|++-++.+.+. | =+|.--+| |+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiliPc-A~~~~I~~~~a~~l~a~~c--k~I~EgAN~p~ 156 (255)
T d1bgva1 81 EEKINYMLEMRASGRNKVQDYADKFGVQFFPGEKPWGQKVDIIMPC-ATQNDVDLEQAKKIVANNV--KYYIEVANMPT 156 (255)
T ss_dssp HHHHHHHHHHHHHCCCCTHHHHHHHTCEEEETCCGGGSCCSEEECC-SCTTCBCHHHHHHHHHTTC--CEEECCSSSCB
T ss_pred HHHHHHHHHHhhhcCcchhhhhhhcCceeechhhcccccccEEeec-cccccccHHHHHhhhhcCc--eEEecCCCCCc
Confidence 1 11111100 00001111 1123579999955 45779999999998542 3 37778888 66
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=92.63 E-value=0.22 Score=45.30 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=67.4
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHH
Q 008629 293 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 372 (559)
Q Consensus 293 ~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~ 372 (559)
.|+.|.++++.|+|.|..|..+|+++... |+ +++.+|... .. .... ......+|.
T Consensus 37 ~g~el~gk~vgIiG~G~IG~~va~~l~~f-----g~-------~V~~~d~~~------~~--~~~~-----~~~~~~~l~ 91 (197)
T d1j4aa1 37 IGREVRDQVVGVVGTGHIGQVFMQIMEGF-----GA-------KVITYDIFR------NP--ELEK-----KGYYVDSLD 91 (197)
T ss_dssp CBCCGGGSEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC------CH--HHHH-----TTCBCSCHH
T ss_pred cCccccCCeEEEecccccchhHHHhHhhh-----cc-------cccccCccc------cc--cccc-----ceeeecccc
Confidence 46779999999999999999999999542 64 577777641 11 1111 111235799
Q ss_pred HHhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 373 DAVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 373 e~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
|.++. .|+++=. ...-+.|+++.++.|. +..++.-.|.-.
T Consensus 92 ~~l~~--sDii~~~~plt~~T~~li~~~~l~~mk---~~a~lIN~sRG~ 135 (197)
T d1j4aa1 92 DLYKQ--ADVISLHVPDVPANVHMINDESIAKMK---QDVVIVNVSRGP 135 (197)
T ss_dssp HHHHH--CSEEEECSCCCGGGTTCBSHHHHHHSC---TTEEEEECSCGG
T ss_pred ccccc--cccccccCCccccccccccHHHHhhhC---CccEEEecCchh
Confidence 99986 8988854 2334799999999996 677888766643
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.46 E-value=0.05 Score=49.19 Aligned_cols=98 Identities=20% Similarity=0.325 Sum_probs=60.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCcc-ccCCcCCCchh-----chhh----------cc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLI-VSSRKDSLQHF-----KKPW----------AH 363 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi-~~~R~~~l~~~-----k~~f----------A~ 363 (559)
+||.|+|||..|.|||-+++. .|. +++++|.+==. .+.+ +.+... ++.+ .+
T Consensus 5 kkvaViGaG~mG~~iA~~~a~-----~G~-------~V~l~D~~~~~l~~a~-~~i~~~l~~~~~~~~~~~~~~~~~~~~ 71 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAA-----TGH-------TVVLVDQTEDILAKSK-KGIEESLRKVAKKKFAENPKAGDEFVE 71 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSCHHHHHHHH-HHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHh-----CCC-------cEEEEECChHHHHHHH-hhHHHHHHHHHHhhhhccchhhHHHHH
Confidence 699999999999999988775 375 68888874100 0000 000000 0000 00
Q ss_pred ----ccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEe
Q 008629 364 ----EHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILA 412 (559)
Q Consensus 364 ----~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFa 412 (559)
.-....++.++++. .|.+|=+-.---...+++++.+.+.++.-.||+
T Consensus 72 ~~l~~i~~~~d~~~a~~~--ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ila 122 (192)
T d1f0ya2 72 KTLSTIATSTDAASVVHS--TDLVVEAIVENLKVKNELFKRLDKFAAEHTIFA 122 (192)
T ss_dssp HHHHTEEEESCHHHHTTS--CSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEE
T ss_pred HHHhhccccchhHhhhcc--cceehhhcccchhHHHHHHHHHhhhcccCceee
Confidence 01122478888875 788887655444567888888887777767764
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.072 Score=42.39 Aligned_cols=36 Identities=11% Similarity=0.261 Sum_probs=30.3
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.++++||+|+|+|-.|.++|+.|.. .| .+++++|.+
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~-----~g-------~~v~~~D~~ 37 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLA-----RG-------VTPRVMDTR 37 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHH-----TT-------CCCEEEESS
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHH-----CC-------CEEEEeeCC
Confidence 5789999999999999999998876 36 468888874
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=92.09 E-value=0.092 Score=45.44 Aligned_cols=115 Identities=21% Similarity=0.324 Sum_probs=65.3
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
.||.|+|||.-|..+|-.|.. .|+ -..+.|+|.+.=..++..-+|.+. ..|.....-..+-.+.++.
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~L~D~~~~~~~g~a~Dl~~~-~~~~~~~~~~~~~~~~~~~-- 68 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMAL-----RQT-----ANELVLIDVFKEKAIGEAMDINHG-LPFMGQMSLYAGDYSDVKD-- 68 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TTC-----SSEEEEECCC---CCHHHHHHTTS-CCCTTCEEEC--CGGGGTT--
T ss_pred CeEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeccCCccceeeeeeccC-cccCCCeeEeeCcHHHhCC--
Confidence 489999999999999877755 366 256999995421111110012221 1222211111222344554
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcc
Q 008629 380 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTW 430 (559)
Q Consensus 380 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~w 430 (559)
.|++|=+.+.+.. .-+++++.|.+++++.|++--|||. .....-++++
T Consensus 69 adivvitag~~~~~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPv---dv~t~~~~k~ 130 (142)
T d1y6ja1 69 CDVIVVTAGANRKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSNPV---DIITYMIQKW 130 (142)
T ss_dssp CSEEEECCCC------CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSSSH---HHHHHHHHHH
T ss_pred CceEEEecccccCcCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecChH---HHHHHHHHHH
Confidence 8877755544321 1237788888999999999999997 2233445555
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=92.02 E-value=0.086 Score=45.26 Aligned_cols=103 Identities=22% Similarity=0.324 Sum_probs=62.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC-ccccCCcCCCchhchhhccccCCC--CCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G-Li~~~R~~~l~~~k~~fA~~~~~~--~~L~e~V~~ 377 (559)
||.|+|||.-|..+|.+|.. .|+ -..+.|+|.+- ... ....++.+. ..+....... .+..++.+.
T Consensus 2 KI~IIGaG~VG~~la~~l~~-----~~l-----~~el~L~Di~~~~~~-~~~~d~~~~-~~~~~~~~~i~~~~~~~~~~d 69 (142)
T d1guza1 2 KITVIGAGNVGATTAFRLAE-----KQL-----ARELVLLDVVEGIPQ-GKALDMYES-GPVGLFDTKVTGSNDYADTAN 69 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSSSHHH-HHHHHHHTT-HHHHTCCCEEEEESCGGGGTT
T ss_pred EEEEECcCHHHHHHHHHHHh-----CCC-----CceEEEeccccccch-hhhhhhhcc-cchhcccceEEecCCHHHhcC
Confidence 79999999999998877764 365 25799999641 111 000011111 1111111111 233455554
Q ss_pred cCCcEEEeccCCCCCC--------------CHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGRTF--------------TKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~F--------------t~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+..- -+++++.++++++..|++=.|||.
T Consensus 70 --advvvitag~~~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtNPv 121 (142)
T d1guza1 70 --SDIVIITAGLPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSNPL 121 (142)
T ss_dssp --CSEEEECCSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCSSH
T ss_pred --CeEEEEEEecCCCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecCCh
Confidence 78887555543221 257788889999999999999997
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.54 E-value=0.081 Score=46.65 Aligned_cols=47 Identities=26% Similarity=0.437 Sum_probs=36.5
Q ss_pred HHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 284 AGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 284 Agll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|++.+++-.+.++++.+++|+|||.++-+|+ .++. +. ++|+++++.
T Consensus 3 ~G~~~~l~~~~~~~~~k~vlIlGaGG~arai~----~aL~---~~------~~i~I~nR~ 49 (177)
T d1nvta1 3 IGARMALEEEIGRVKDKNIVIYGAGGAARAVA----FELA---KD------NNIIIANRT 49 (177)
T ss_dssp HHHHHHHHHHHCCCCSCEEEEECCSHHHHHHH----HHHT---SS------SEEEEECSS
T ss_pred HHHHHHHHHhCCCcCCCEEEEECCcHHHHHHH----HHHc---cc------cceeeehhh
Confidence 58899999999999999999999997766554 4332 22 479988773
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.47 E-value=0.18 Score=43.86 Aligned_cols=105 Identities=21% Similarity=0.282 Sum_probs=63.6
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||.|+| ||.-|..+|-+|... .|+ -+.+.|+|.+... ++..-+|.+.....-...-...+..++++.
T Consensus 2 KV~IiGaaG~VG~~~a~~l~~~----~~~-----~~el~L~D~~~~~-~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~-- 69 (145)
T d2cmda1 2 KVAVLGAAGGIGQALALLLKTQ----LPS-----GSELSLYDIAPVT-PGVAVDLSHIPTAVKIKGFSGEDATPALEG-- 69 (145)
T ss_dssp EEEEETTTSHHHHHHHHHHHHH----SCT-----TCEEEEECSSTTH-HHHHHHHHTSCSSCEEEEECSSCCHHHHTT--
T ss_pred EEEEEcCCChHHHHHHHHHHhC----CCC-----CcEEEEecccccc-hhHHHHHHCCccccCCcEEEcCCCccccCC--
Confidence 899999 599998888766432 344 2569999975321 111001222111110111111234456765
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 380 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+++.+.. .-+++.+.++++++..||+--|||.
T Consensus 70 aDvvvitaG~~~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvtNPv 121 (145)
T d2cmda1 70 ADVVLISAGVRRKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIITNPV 121 (145)
T ss_dssp CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH
T ss_pred CCEEEECCCccCCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEccCCc
Confidence 8999977765411 2356777888999999999999998
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=90.94 E-value=0.42 Score=43.06 Aligned_cols=114 Identities=16% Similarity=0.181 Sum_probs=72.0
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..+++.++.|+|.|..|..+|+++... |+ ++..+|+..- . -........ ....+|.+
T Consensus 42 ~~~l~g~tvgIiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~~------~-~~~~~~~~~---~~~~~l~~ 99 (191)
T d1gdha1 42 GEKLDNKTLGIYGFGSIGQALAKRAQGF-----DM-------DIDYFDTHRA------S-SSDEASYQA---TFHDSLDS 99 (191)
T ss_dssp BCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECSSCC------C-HHHHHHHTC---EECSSHHH
T ss_pred cceecccceEEeecccchHHHHHHHHhh-----cc-------cccccccccc------c-cchhhcccc---cccCCHHH
Confidence 4567789999999999999999888643 54 5666776311 0 111111111 12357999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc--ccCCcEEEe
Q 008629 374 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT--WSKGRAIFA 438 (559)
Q Consensus 374 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~--wt~G~aifA 438 (559)
+++. .|+++=. ...-+.|+++.++.|. +..++.=.|. .|+-=|+|+- ...|+.-.|
T Consensus 100 ll~~--sD~v~l~~plt~~T~~li~~~~l~~mk---~~a~lIN~sR----G~ivde~aL~~aL~~g~i~~a 161 (191)
T d1gdha1 100 LLSV--SQFFSLNAPSTPETRYFFNKATIKSLP---QGAIVVNTAR----GDLVDNELVVAALEAGRLAYA 161 (191)
T ss_dssp HHHH--CSEEEECCCCCTTTTTCBSHHHHTTSC---TTEEEEECSC----GGGBCHHHHHHHHHHTSEEEE
T ss_pred HHhh--CCeEEecCCCCchHhheecHHHhhCcC---CccEEEecCC----ccchhhHHHHHHHHcCCceEE
Confidence 9986 8888632 2234799999999997 6778776655 4444444432 245665433
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=90.79 E-value=0.084 Score=45.50 Aligned_cols=103 Identities=17% Similarity=0.347 Sum_probs=62.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-CccccCCcCCCchhchhhccccCCCCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vk 379 (559)
||.|+|||.-|..+|-.|+. .|+ -+.+.|+|.+ +.+.....| +.+ -.+|.....-..+..++++.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~-----~~l-----~~el~L~Di~~~~~~g~~~D-l~~-~~~~~~~~~~~~~~~~~~~~-- 67 (140)
T d1a5za1 2 KIGIVGLGRVGSSTAFALLM-----KGF-----AREMVLIDVDKKRAEGDALD-LIH-GTPFTRRANIYAGDYADLKG-- 67 (140)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----HTC-----CSEEEEECSSHHHHHHHHHH-HHH-HGGGSCCCEEEECCGGGGTT--
T ss_pred EEEEECcCHHHHHHHHHHHh-----CCC-----CCEEEEEecccccccchhcc-ccc-cccccccccccCCcHHHhcC--
Confidence 89999999999888877654 265 2579999964 111100001 111 11222111111233455665
Q ss_pred CcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 380 PTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 380 PtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+.. .-+++++.++++++..+++-.|||.
T Consensus 68 adivvitag~~~~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvtNPv 119 (140)
T d1a5za1 68 SDVVIVAAGVPQKPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVTNPV 119 (140)
T ss_dssp CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred CCEEEEecccccCCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeCCcH
Confidence 8888866655422 1246678888999999999999997
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=90.76 E-value=0.45 Score=43.00 Aligned_cols=111 Identities=14% Similarity=0.111 Sum_probs=71.9
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
|..|.++++.|+|.|..|-.+|+.+... |+ +++.+|+. ... .... ........+|.|
T Consensus 44 ~~eL~gktvgIiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~----~~~----~~~~---~~~~~~~~~l~~ 100 (193)
T d1mx3a1 44 AARIRGETLGIIGLGRVGQAVALRAKAF-----GF-------NVLFYDPY----LSD----GVER---ALGLQRVSTLQD 100 (193)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHHTT-----TC-------EEEEECTT----SCT----THHH---HHTCEECSSHHH
T ss_pred ceeeeCceEEEeccccccccceeeeecc-----cc-------ceeeccCc----ccc----cchh---hhccccccchhh
Confidence 6679999999999999999999988642 65 57777774 111 1111 011122357999
Q ss_pred HhcccCCcEEEec----cCCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHh-cc-cCCcEE
Q 008629 374 AVKVIKPTILIGS----SGVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAY-TW-SKGRAI 436 (559)
Q Consensus 374 ~V~~vkPtvLIG~----S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~-~w-t~G~ai 436 (559)
.++. .|+++=. ...-+.++++.++.|. +..++.=.|. .|+-=|+|+ ++ .+|+.-
T Consensus 101 ll~~--sD~i~~~~plt~~T~~li~~~~l~~mk---~~a~lIN~sR----G~ivde~aL~~aL~~~~i~ 160 (193)
T d1mx3a1 101 LLFH--SDCVTLHCGLNEHNHHLINDFTVKQMR---QGAFLVNTAR----GGLVDEKALAQALKEGRIR 160 (193)
T ss_dssp HHHH--CSEEEECCCCCTTCTTSBSHHHHTTSC---TTEEEEECSC----TTSBCHHHHHHHHHHTSEE
T ss_pred cccc--CCEEEEeecccccchhhhhHHHHhccC---CCCeEEecCC----ceEEcHHHHHHHHHcCCce
Confidence 9886 8887532 2234789999999996 6778886665 444444433 22 245543
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=90.72 E-value=0.51 Score=42.04 Aligned_cols=114 Identities=13% Similarity=0.052 Sum_probs=74.1
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLD 373 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e 373 (559)
+..|++.++.|+|.|..|..+|+++... |+ +++.+|+... . -...+... .....+|.|
T Consensus 39 ~~~l~~~~vgiiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~~-----~--~~~~~~~~---~~~~~~l~~ 96 (188)
T d2naca1 39 AYDLEAMHVGTVAAGRIGLAVLRRLAPF-----DV-------HLHYTDRHRL-----P--ESVEKELN---LTWHATRED 96 (188)
T ss_dssp CCCCTTCEEEEECCSHHHHHHHHHHGGG-----TC-------EEEEECSSCC-----C--HHHHHHHT---CEECSSHHH
T ss_pred ceeccccceeeccccccchhhhhhhhcc-----Cc-------eEEEEeeccc-----c--cccccccc---ccccCCHHH
Confidence 5678999999999999999999988653 54 5888887521 0 11111111 122368999
Q ss_pred HhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhcccCCcEE
Q 008629 374 AVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYTWSKGRAI 436 (559)
Q Consensus 374 ~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~wt~G~ai 436 (559)
..+. .|+++=.- ..-+.|+++.++.|. +..++.=.|.-.--=|..--+|+ .+|+.-
T Consensus 97 ~l~~--sD~v~~~~plt~~T~~li~~~~l~~mk---~ga~lIN~aRG~ivd~~aL~~aL--~~g~i~ 156 (188)
T d2naca1 97 MYPV--CDVVTLNCPLHPETEHMINDETLKLFK---RGAYIVNTARGKLCDRDAVARAL--ESGRLA 156 (188)
T ss_dssp HGGG--CSEEEECSCCCTTTTTCBSHHHHTTSC---TTEEEEECSCGGGBCHHHHHHHH--HTTSEE
T ss_pred HHHh--ccchhhcccccccchhhhHHHHHHhCC---CCCEEEecCchhhhhHHHHHHHH--hCCCce
Confidence 9886 89887531 224799999999996 77888877664433333333333 345543
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=90.66 E-value=0.1 Score=43.93 Aligned_cols=32 Identities=19% Similarity=0.432 Sum_probs=24.8
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+|+|||.||+..|..|.+ .|+ +++.++++.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~-----~G~------~~V~vlE~~ 33 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSE-----AGI------TDLLILEAT 33 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHH-----TTC------CCEEEECSS
T ss_pred CEEEECCcHHHHHHHHHHHh-----CCC------CcEEEEECC
Confidence 69999999999999988865 375 346666654
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.57 E-value=0.032 Score=49.69 Aligned_cols=110 Identities=17% Similarity=0.231 Sum_probs=64.8
Q ss_pred CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccC--CCCCH
Q 008629 294 GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNL 371 (559)
Q Consensus 294 g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~--~~~~L 371 (559)
..+++..||.|+|||.-|..+|-.|+. .|+ -..+.|+|.+-=..++...+|.+-. .|..... ...+.
T Consensus 14 ~~~~~~~KI~IIGaG~VG~~~A~~l~~-----~~l-----~~elvL~D~~~~~a~g~alDl~~~~-~~~~~~~~~~~~d~ 82 (159)
T d2ldxa1 14 EDKLSRCKITVVGVGDVGMACAISILL-----KGL-----ADELALVDADTDKLRGEALDLQHGS-LFLSTPKIVFGKDY 82 (159)
T ss_dssp CCCCCCCEEEEECCSHHHHHHHHHHHT-----TTS-----CSEEEEECSCHHHHHHHHHHHHHTT-TTCSCCEEEEESSG
T ss_pred cccCCCCeEEEECCCHHHHHHHHHHHh-----cCC-----CCEEEEEeCCchhhhccHHHHhCcc-hhcCCCeEEeccch
Confidence 456777899999999999999877764 366 2579999975211111000132211 1111100 01233
Q ss_pred HHHhcccCCcEEEeccCCC---C-----CC--C----HHHHHHHHcCCCCcEEEecCCCC
Q 008629 372 LDAVKVIKPTILIGSSGVG---R-----TF--T----KEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 372 ~e~V~~vkPtvLIG~S~~~---g-----~F--t----~evv~~Ma~~~erPIIFaLSNPt 417 (559)
++ .+ ..|++|=+.+.+ | .| + +++++.+++++...|++-.|||-
T Consensus 83 ~~-~~--~adivvitag~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtNPv 139 (159)
T d2ldxa1 83 NV-SA--NSKLVIITAGARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTNPV 139 (159)
T ss_dssp GG-GT--TEEEEEECCSCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSSSH
T ss_pred hh-hc--cccEEEEecccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCCcH
Confidence 33 34 378877555543 1 12 2 34555567789999999999998
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=90.45 E-value=0.18 Score=43.81 Aligned_cols=101 Identities=20% Similarity=0.310 Sum_probs=61.7
Q ss_pred eEEEeC-cChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC---ccccCCcCCCchhchhhccccC-CCCCHHHHh
Q 008629 301 RFLFLG-AGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG---LIVSSRKDSLQHFKKPWAHEHE-PVNNLLDAV 375 (559)
Q Consensus 301 riv~~G-AGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G---Li~~~R~~~l~~~k~~fA~~~~-~~~~L~e~V 375 (559)
||.|+| +|.-|..+|-+|.. .|+. +.+.|+|.+. ...-...| |.+ -..|..... ...+.++ +
T Consensus 2 KV~IiGaaG~VG~~~A~~l~~-----~~l~-----~el~L~Di~~~~~~~~g~a~D-l~~-~~~~~~~~~i~~~~~~~-~ 68 (142)
T d1o6za1 2 KVSVVGAAGTVGAAAGYNIAL-----RDIA-----DEVVFVDIPDKEDDTVGQAAD-TNH-GIAYDSNTRVRQGGYED-T 68 (142)
T ss_dssp EEEEETTTSHHHHHHHHHHHH-----TTCC-----SEEEEECCGGGHHHHHHHHHH-HHH-HHTTTCCCEEEECCGGG-G
T ss_pred eEEEECCCCcHHHHHHHHHHh-----CCCC-----CEEEEEecCCcccccceeecc-hhh-cccccCCceEeeCCHHH-h
Confidence 899999 69999999888864 3663 5699999531 11000001 222 112221100 0134443 3
Q ss_pred cccCCcEEE---eccCCCCCCC------------HHHHHHHHcCCCCcEEEecCCCC
Q 008629 376 KVIKPTILI---GSSGVGRTFT------------KEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 376 ~~vkPtvLI---G~S~~~g~Ft------------~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+ ..|++| |.+..+|- | +++++.+++++...|+.-.|||-
T Consensus 69 ~--~aDiVvitaG~~~~~g~-~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvtNPv 122 (142)
T d1o6za1 69 A--GSDVVVITAGIPRQPGQ-TRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTSNPV 122 (142)
T ss_dssp T--TCSEEEECCCCCCCTTC-CHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECCSSH
T ss_pred h--hcCEEEEecccccccCC-chhhHHHHHHHHHHHHHHHHHhcCCCceEEEecChH
Confidence 4 499998 44444552 3 46677788999999999999998
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=90.35 E-value=0.26 Score=46.18 Aligned_cols=116 Identities=17% Similarity=0.154 Sum_probs=75.9
Q ss_pred hhHHHHHHHHHHHHHh--CCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 278 TASVVLAGVVAALKLI--GGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 278 TaaV~LAgll~Alr~~--g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
||-=+..++.++++.. +.+|++.||+|-|-|..|..+|+.|.+. |. ++..+|-+ .+.+.
T Consensus 16 Tg~GV~~~~~~~~~~~~g~~~l~g~~v~IqG~GnVG~~~a~~L~~~-----Ga-------kvv~~d~~-------~~~~~ 76 (230)
T d1leha1 16 TAYGVYRGMKAAAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTE-----GA-------KLVVTDVN-------KAAVS 76 (230)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCCTTCEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSC-------HHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHC-----CC-------EEEeeccc-------HHHHH
Confidence 3333444556666654 4679999999999999999999998763 63 46656542 11232
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecC-CCCCCCC
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALS-NPTSQSE 421 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLS-NPt~~~E 421 (559)
..+..+-.. .-+..+ +-.++.|||+=++. ++++|++.+..+. -.+|.--+ ||.+.+|
T Consensus 77 ~~~~~~g~~---~~~~~~-~~~~~cDIl~PcA~-~~~I~~~~~~~l~----ak~Ive~ANn~~t~~e 134 (230)
T d1leha1 77 AAVAEEGAD---AVAPNA-IYGVTCDIFAPCAL-GAVLNDFTIPQLK----AKVIAGSADNQLKDPR 134 (230)
T ss_dssp HHHHHHCCE---ECCGGG-TTTCCCSEEEECSC-SCCBSTTHHHHCC----CSEECCSCSCCBSSHH
T ss_pred HHHHhcCCc---ccCCcc-cccccccEeccccc-ccccChHHhhccC----ccEEEecccCCCCCch
Confidence 222222111 112233 44568999997666 7799999999984 56999999 7774343
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=90.23 E-value=1.2 Score=39.98 Aligned_cols=111 Identities=14% Similarity=0.134 Sum_probs=74.5
Q ss_pred hCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHH
Q 008629 293 IGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLL 372 (559)
Q Consensus 293 ~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~ 372 (559)
.|..|.+++|.|+|.|..|..+|+++... |+ +++.+|+.. .. . ....+ ...+|.
T Consensus 39 ~~~~l~~ktvgIiG~G~IG~~va~~l~~f-----g~-------~v~~~d~~~----~~-~----~~~~~-----~~~~l~ 92 (199)
T d1dxya1 39 IGKELGQQTVGVMGTGHIGQVAIKLFKGF-----GA-------KVIAYDPYP----MK-G----DHPDF-----DYVSLE 92 (199)
T ss_dssp CCCCGGGSEEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSC----CS-S----CCTTC-----EECCHH
T ss_pred ccccccceeeeeeeccccccccccccccc-----ce-------eeeccCCcc----ch-h----hhcch-----hHHHHH
Confidence 36789999999999999999999998643 65 688888741 11 0 00011 124799
Q ss_pred HHhcccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHHhc-c-cCCcEEEe
Q 008629 373 DAVKVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEAYT-W-SKGRAIFA 438 (559)
Q Consensus 373 e~V~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA~~-w-t~G~aifA 438 (559)
|.++. .|+++=.. ..-+.|+++.++.|. +..++.=.|. .|+--|+|+- + ..|+.-.|
T Consensus 93 ~l~~~--~D~v~~~~plt~~T~~li~~~~l~~mk---~~a~lIN~aR----G~vvde~aL~~aL~~g~i~ga 155 (199)
T d1dxya1 93 DLFKQ--SDVIDLHVPGIEQNTHIINEAAFNLMK---PGAIVINTAR----PNLIDTQAMLSNLKSGKLAGV 155 (199)
T ss_dssp HHHHH--CSEEEECCCCCGGGTTSBCHHHHHHSC---TTEEEEECSC----TTSBCHHHHHHHHHTTSEEEE
T ss_pred HHHHh--cccceeeecccccccccccHHHhhccC---CceEEEeccc----HhhhhhHHHHHHHhcCCcceE
Confidence 98886 78887542 224689999999996 7778886665 5555554432 2 35664433
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=90.04 E-value=0.18 Score=41.67 Aligned_cols=97 Identities=14% Similarity=0.213 Sum_probs=52.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc-hhhccccCCCCCHHHH-hcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK-KPWAHEHEPVNNLLDA-VKV 377 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k-~~fA~~~~~~~~L~e~-V~~ 377 (559)
.||+|+|+|..|..+|+.|.+ .| ..++++|.+ .++-+.+.+.- ..+.-+......|.++ ++
T Consensus 1 k~~iIiG~G~~G~~la~~L~~-----~g-------~~vvvid~d----~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~- 63 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHR-----MG-------HEVLAVDIN----EEKVNAYASYATHAVIANATEENELLSLGIR- 63 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHH-----TT-------CCCEEEESC----HHHHHHTTTTCSEEEECCTTCTTHHHHHTGG-
T ss_pred CEEEEECCCHHHHHHHHHHHH-----CC-------CeEEEecCc----HHHHHHHHHhCCcceeeecccchhhhccCCc-
Confidence 379999999999999999975 36 468888875 22111111111 1111122223446665 54
Q ss_pred cCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC
Q 008629 378 IKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN 415 (559)
Q Consensus 378 vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN 415 (559)
+++++|-+.+... =+--++...++....|-|++.+|
T Consensus 64 -~a~~vi~~~~~~~-~~~~~~~~~~~~~~~~~iiar~~ 99 (134)
T d2hmva1 64 -NFEYVIVAIGANI-QASTLTTLLLKELDIPNIWVKAQ 99 (134)
T ss_dssp -GCSEEEECCCSCH-HHHHHHHHHHHHTTCSEEEEECC
T ss_pred -cccEEEEEcCchH-HhHHHHHHHHHHcCCCcEEeecc
Confidence 4887776554321 01122233334556666776665
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=90.03 E-value=0.098 Score=45.48 Aligned_cols=104 Identities=15% Similarity=0.272 Sum_probs=64.9
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccC--CCCCHHHHhcc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHE--PVNNLLDAVKV 377 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~--~~~~L~e~V~~ 377 (559)
.||.|+|||.-|..+|-.++. .|+ -+.+.|+|.+-=..++..-+|.+ -..|..... ...+. |..+.
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~-----~~l-----~~ElvL~D~~~~~~~g~a~Dl~~-a~~~~~~~~i~~~~~~-~~~~d 69 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQ-----RGI-----AREIVLEDIAKERVEAEVLDMQH-GSSFYPTVSIDGSDDP-EICRD 69 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSSHHHHHHHHHHHHH-TGGGSTTCEEEEESCG-GGGTT
T ss_pred CEEEEECCCHHHHHHHHHHHh-----cCC-----CcEEEEEEeccccchhHHHHHHh-ccccCCCceeecCCCH-HHhhC
Confidence 589999999999999988865 376 36799999642111110001322 122322110 11344 44554
Q ss_pred cCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+.. .-+++.+.+++++...|+.--|||-
T Consensus 70 --aDvVVitaG~~~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvtNPv 121 (143)
T d1llda1 70 --ADMVVITAGPRQKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNPV 121 (143)
T ss_dssp --CSEEEECCCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSH
T ss_pred --CcEEEEecccccCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeCCch
Confidence 8998877666532 1235567778899999999999998
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=89.85 E-value=0.2 Score=43.75 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=61.6
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCC--CCHHHHhc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPV--NNLLDAVK 376 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~--~~L~e~V~ 376 (559)
..||.|+|||.-|.-+|-++.. .++ ..+.|+|.+-=..++-..+|.+ -..|....... .+-.+..+
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~-----~~l------~el~L~Di~~~~~~g~a~Dl~~-~~~~~~~~~~v~~~~~~~~~~ 70 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQ-----KNL------GDVVLFDIVKNMPHGKALDTSH-TNVMAYSNCKVSGSNTYDDLA 70 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHH-----TTC------CEEEEECSSSSHHHHHHHHHHT-HHHHHTCCCCEEEECCGGGGT
T ss_pred CCeEEEECCCHHHHHHHHHHHh-----CCC------CeEEEEeccCCcceeeecchhh-hccccCCCcEEEecccccccC
Confidence 3599999999988888865532 466 3499999631111100001221 11222211111 13344566
Q ss_pred ccCCcEEEeccCCC---CCC------------C----HHHHHHHHcCCCCcEEEecCCCC
Q 008629 377 VIKPTILIGSSGVG---RTF------------T----KEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 377 ~vkPtvLIG~S~~~---g~F------------t----~evv~~Ma~~~erPIIFaLSNPt 417 (559)
. .|++|=+.+.+ |-- + +++++.++++++..||+-.|||-
T Consensus 71 ~--advvvitag~~~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtNPv 128 (150)
T d1t2da1 71 G--ADVVIVTAGFTKAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTNPV 128 (150)
T ss_dssp T--CSEEEECCSCSSCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSSSH
T ss_pred C--CcEEEEecccccCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecCch
Confidence 4 88888776644 311 1 35666678899999999999997
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=89.84 E-value=0.1 Score=48.11 Aligned_cols=37 Identities=24% Similarity=0.444 Sum_probs=33.6
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|++.||+|+|+|.-|.-+|..|+.+ |+ ++|.++|.+
T Consensus 27 kL~~~~VliiG~GglGs~va~~La~~-----Gv------g~i~lvD~D 63 (247)
T d1jw9b_ 27 ALKDSRVLIVGLGGLGCAASQYLASA-----GV------GNLTLLDFD 63 (247)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECCC
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHc-----CC------CeEEEECCc
Confidence 58899999999999999999999875 87 899999976
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=89.19 E-value=0.21 Score=43.91 Aligned_cols=51 Identities=18% Similarity=0.107 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 281 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 281 V~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+++.-+.|++..+.+ .+++|+|+|||..|+..+.++.. .|. ++|+.+|+.
T Consensus 11 ~~~~ta~~a~~~a~~~-~g~~VlI~GaG~vGl~~~q~ak~-----~Ga------~~Vi~~d~~ 61 (174)
T d1jqba2 11 DMMTTGFHGAELADIE-MGSSVVVIGIGAVGLMGIAGAKL-----RGA------GRIIGVGSR 61 (174)
T ss_dssp THHHHHHHHHHHTTCC-TTCCEEEECCSHHHHHHHHHHHT-----TTC------SCEEEECCC
T ss_pred hHHHHHHHHHHHhCCC-CCCEEEEEcCCcchhhhhhhhhc-----ccc------cccccccch
Confidence 4566667888887655 46789999999777665544432 364 679988874
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.82 E-value=1.3 Score=38.16 Aligned_cols=90 Identities=22% Similarity=0.156 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
.-.-++|+.-.++.-..++|+|+|+|..|+-.+.++... |. ++++.+|++ +.| +...++-=|
T Consensus 13 ~~Ta~~a~~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~-----g~------~~v~~~~~~----~~k---~~~a~~~Ga 74 (174)
T d1f8fa2 13 IQTGAGACINALKVTPASSFVTWGAGAVGLSALLAAKVC-----GA------SIIIAVDIV----ESR---LELAKQLGA 74 (174)
T ss_dssp HHHHHHHHHTTTCCCTTCEEEEESCSHHHHHHHHHHHHH-----TC------SEEEEEESC----HHH---HHHHHHHTC
T ss_pred HHHHHHHHHHhhCCCCCCEEEEeCCCHHHhhhhhccccc-----cc------ceeeeeccH----HHH---HHHHHHcCC
Confidence 333345544445556688999999998887777655442 54 678887753 111 211111111
Q ss_pred cc--cCCCCCHHHHhccc---CCcEEEeccCCC
Q 008629 363 HE--HEPVNNLLDAVKVI---KPTILIGSSGVG 390 (559)
Q Consensus 363 ~~--~~~~~~L~e~V~~v---kPtvLIG~S~~~ 390 (559)
.. .....++.|.|+.. ++|+.|=+++.+
T Consensus 75 ~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~ 107 (174)
T d1f8fa2 75 THVINSKTQDPVAAIKEITDGGVNFALESTGSP 107 (174)
T ss_dssp SEEEETTTSCHHHHHHHHTTSCEEEEEECSCCH
T ss_pred eEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcH
Confidence 11 11124566666543 468888777743
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.81 E-value=0.16 Score=44.00 Aligned_cols=106 Identities=17% Similarity=0.275 Sum_probs=63.7
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC-ccccCCcCCCchhchhhccccCCC-CCHHHHh
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEHEPV-NNLLDAV 375 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G-Li~~~R~~~l~~~k~~fA~~~~~~-~~L~e~V 375 (559)
...||.|+|||.-|..+|-.|+.. |+. +.+.|+|.+- .. ++..-+|.+. ..|....... .+-.+.+
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~-----~l~-----~el~L~Di~~~~~-~g~a~Dl~~~-~~~~~~~~~~~~~d~~~l 72 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQ-----GIA-----DEIVLIDANESKA-IGDAMDFNHG-KVFAPKPVDIWHGDYDDC 72 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHH-----TCC-----SEEEEECSSHHHH-HHHHHHHHHH-TTSSSSCCEEEECCGGGT
T ss_pred CCCeEEEECcCHHHHHHHHHHHhc-----CCC-----ceEEEEeeccccc-cchhccHhhC-ccccCCCeEEEECCHHHh
Confidence 356999999999999999877652 662 5799999641 10 0000013221 1121111001 1123445
Q ss_pred cccCCcEEEeccCCCCC--------------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 376 KVIKPTILIGSSGVGRT--------------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 376 ~~vkPtvLIG~S~~~g~--------------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
+. .|++|=+.+.+.. .-+++.+.++++++.-+|.-.|||.
T Consensus 73 ~d--aDvvvitag~~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvtNPv 126 (148)
T d1ldna1 73 RD--ADLVVICAGANQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVATNPV 126 (148)
T ss_dssp TT--CSEEEECCSCCCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECSSSH
T ss_pred cc--ceeEEEecccccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEecCcc
Confidence 54 8888755444321 1256788889999999999999998
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=88.72 E-value=0.2 Score=43.85 Aligned_cols=36 Identities=19% Similarity=0.294 Sum_probs=29.3
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
+.+||||+|||.||+..|-.|.+ .|. ++.++|+..+
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~-----~G~-------~V~vier~~~ 40 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILAR-----KGY-------SVHILARDLP 40 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEEESSCT
T ss_pred CCCcEEEECccHHHHHHHHHHHH-----CCC-------CEEEEeCCCC
Confidence 45799999999999999998865 363 6899998643
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.53 E-value=0.32 Score=47.20 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=72.1
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhc--hhhcccc------C
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFK--KPWAHEH------E 366 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k--~~fA~~~------~ 366 (559)
.+|++.||+|-|-|..|...|+.|.+ .|. +=+-+.|++|-|+... .++..+ ..+.... .
T Consensus 32 ~~L~gktvaIqGfGnVG~~~A~~L~e-----~Ga------kvv~vsD~~G~i~~~~--Gld~~~L~~~~~~~~~~~~~~~ 98 (293)
T d1hwxa1 32 PGFGDKTFAVQGFGNVGLHSMRYLHR-----FGA------KCVAVGESDGSIWNPD--GIDPKELEDFKLQHGTILGFPK 98 (293)
T ss_dssp SSSTTCEEEEECCSHHHHHHHHHHHH-----TTC------EEEEEEETTEEECCTT--CCCHHHHHHHHHTTSSSTTCTT
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHH-----CCC------EEEEEEccchhhcccc--ccchHHHHHHHHHcCCeecccc
Confidence 57999999999999999999999976 364 5577889999998764 233221 1111100 0
Q ss_pred CCCCHHHHhcccCCcEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCC-CCC
Q 008629 367 PVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIEAMASFNEKPLILALSN-PTS 418 (559)
Q Consensus 367 ~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSN-Pt~ 418 (559)
..-+- +.+-.++.||||=++. ++..|++.++.+ .-.+|.--+| |++
T Consensus 99 ~~~~~-~~~~~~~~DIliPaA~-~~~I~~~~a~~l----~ak~I~EgAN~P~t 145 (293)
T d1hwxa1 99 AKIYE-GSILEVDCDILIPAAS-EKQLTKSNAPRV----KAKIIAEGANGPTT 145 (293)
T ss_dssp SCBCC-SCGGGCCCSEEEECSS-SSCBCTTTGGGC----CCSEEECCSSSCBC
T ss_pred cccCC-cccccCCccEEeeccc-cccccHHHHHHH----hhCEEeccCCCCCC
Confidence 00011 1234468999997755 679999988877 3568889998 764
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.47 E-value=0.85 Score=40.59 Aligned_cols=95 Identities=16% Similarity=0.251 Sum_probs=67.5
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHh
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAV 375 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V 375 (559)
.|.+++|.|+|.|..|-.+|+++... |+ +++.+|+.. + + ... ....+|.|.+
T Consensus 39 ~l~gk~vgIiG~G~IG~~va~~l~~~-----g~-------~v~~~d~~~-----~-~--~~~--------~~~~~l~ell 90 (181)
T d1qp8a1 39 LIQGEKVAVLGLGEIGTRVGKILAAL-----GA-------QVRGFSRTP-----K-E--GPW--------RFTNSLEEAL 90 (181)
T ss_dssp CCTTCEEEEESCSTHHHHHHHHHHHT-----TC-------EEEEECSSC-----C-C--SSS--------CCBSCSHHHH
T ss_pred cccCceEEEeccccccccceeeeecc-----cc-------ccccccccc-----c-c--cce--------eeeechhhhh
Confidence 38899999999999999999988753 64 688888641 1 1 001 1124799999
Q ss_pred cccCCcEEEecc----CCCCCCCHHHHHHHHcCCCCcEEEecCCCCCCCCCCHHHH
Q 008629 376 KVIKPTILIGSS----GVGRTFTKEVIEAMASFNEKPLILALSNPTSQSECTAEEA 427 (559)
Q Consensus 376 ~~vkPtvLIG~S----~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt~~~EctpedA 427 (559)
+. .|+++-.- ..-+.|+++.++.|. +..|+.=.|. .|+--|+|
T Consensus 91 ~~--sDiv~~~~pl~~~t~~li~~~~l~~mk---~~ailIN~~R----G~ivd~~a 137 (181)
T d1qp8a1 91 RE--ARAAVCALPLNKHTRGLVKYQHLALMA---EDAVFVNVGR----AEVLDRDG 137 (181)
T ss_dssp TT--CSEEEECCCCSTTTTTCBCHHHHTTSC---TTCEEEECSC----GGGBCHHH
T ss_pred hc--cchhhcccccccccccccccceeeecc---ccceEEeccc----cccccchh
Confidence 86 99988643 223799999999996 6778887664 55554444
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=88.13 E-value=0.15 Score=43.81 Aligned_cols=91 Identities=9% Similarity=0.124 Sum_probs=57.9
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 380 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 380 (559)
||.|+|+|..|..+|.-|.+ .| .+++.+|++ . +.+...++.-.- ....+..|+++. +
T Consensus 2 kI~iIG~G~mG~~lA~~l~~-----~g-------~~V~~~d~~----~---~~~~~a~~~~~~--~~~~~~~~~~~~--~ 58 (165)
T d2f1ka2 2 KIGVVGLGLIGASLAGDLRR-----RG-------HYLIGVSRQ----Q---STCEKAVERQLV--DEAGQDLSLLQT--A 58 (165)
T ss_dssp EEEEECCSHHHHHHHHHHHH-----TT-------CEEEEECSC----H---HHHHHHHHTTSC--SEEESCGGGGTT--C
T ss_pred EEEEEeecHHHHHHHHHHHH-----CC-------CEEEEEECC----c---hHHHHHHHhhcc--ceeeeecccccc--c
Confidence 79999999999999987754 35 368888774 1 112221211110 011234467764 8
Q ss_pred cEEEeccCCCCCCCHHHHHHHHc-CCCCcEEEecCCC
Q 008629 381 TILIGSSGVGRTFTKEVIEAMAS-FNEKPLILALSNP 416 (559)
Q Consensus 381 tvLIG~S~~~g~Ft~evv~~Ma~-~~erPIIFaLSNP 416 (559)
|++| ++.+.+ -++++++.++. ..+..||.-.++-
T Consensus 59 DiIi-lavp~~-~~~~vl~~l~~~l~~~~iv~~~~s~ 93 (165)
T d2f1ka2 59 KIIF-LCTPIQ-LILPTLEKLIPHLSPTAIVTDVASV 93 (165)
T ss_dssp SEEE-ECSCHH-HHHHHHHHHGGGSCTTCEEEECCSC
T ss_pred cccc-ccCcHh-hhhhhhhhhhhhcccccceeecccc
Confidence 9888 666554 57788888875 4678888888763
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=87.59 E-value=0.24 Score=42.40 Aligned_cols=36 Identities=22% Similarity=0.353 Sum_probs=28.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
..||+|+|||.||+..|..|.+ .|+ +.+.++|+...
T Consensus 4 ~~kVaIIGaGpaGl~aA~~l~~-----~G~------~~V~v~E~~~~ 39 (196)
T d1gtea4 4 SAKIALLGAGPASISCASFLAR-----LGY------SDITIFEKQEY 39 (196)
T ss_dssp GCCEEEECCSHHHHHHHHHHHH-----TTC------CCEEEEESSSS
T ss_pred CCEEEEECChHHHHHHHHHHHH-----CCC------CeEEEEEecCc
Confidence 4699999999999999988876 376 45778887543
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=87.55 E-value=3.5 Score=35.58 Aligned_cols=132 Identities=14% Similarity=0.076 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhh
Q 008629 282 VLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPW 361 (559)
Q Consensus 282 ~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~f 361 (559)
+...-+.|+.-.++.-..++|+|+|+|.-|+-.+.++... |. ++|+.+|+. .+| ++--++.=
T Consensus 11 a~~Ta~~a~~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~-----G~------~~Vi~~d~~----~~k---l~~a~~lG 72 (174)
T d1p0fa2 11 GFATGYGAAVNTAKVTPGSTCAVFGLGGVGFSAIVGCKAA-----GA------SRIIGVGTH----KDK---FPKAIELG 72 (174)
T ss_dssp HHHHHHHHHHTTTCCCTTCEEEEECCSHHHHHHHHHHHHH-----TC------SEEEEECSC----GGG---HHHHHHTT
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHHc-----CC------ceeeccCCh----HHH---HHHHHHcC
Confidence 3444455554444455568999999998776655555432 64 679988874 222 22222211
Q ss_pred ccc----cCCCCCHHHHhccc---CCcEEEeccCCCCCCCHHHHHHHHcCCCCc----EEEecCCCCCCCCCCHHHHhcc
Q 008629 362 AHE----HEPVNNLLDAVKVI---KPTILIGSSGVGRTFTKEVIEAMASFNEKP----LILALSNPTSQSECTAEEAYTW 430 (559)
Q Consensus 362 A~~----~~~~~~L~e~V~~v---kPtvLIG~S~~~g~Ft~evv~~Ma~~~erP----IIFaLSNPt~~~EctpedA~~w 430 (559)
|.. ......+.++.+.. +.|+.|=+++ .++.++.......+| +++-+.+|..+-+..|...+
T Consensus 73 a~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g-----~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~-- 145 (174)
T d1p0fa2 73 ATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG-----RIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLL-- 145 (174)
T ss_dssp CSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC-----CHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHH--
T ss_pred CcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCC-----CchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHh--
Confidence 211 11112344444332 4666665555 234444444444444 44455555544444444433
Q ss_pred cCCcEEEee
Q 008629 431 SKGRAIFAS 439 (559)
Q Consensus 431 t~G~aifAs 439 (559)
.++-|..|
T Consensus 146 -~~~~i~Gs 153 (174)
T d1p0fa2 146 -TGRSLKGS 153 (174)
T ss_dssp -TTCEEEEC
T ss_pred -CCCEEEEE
Confidence 34555433
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=87.49 E-value=1.1 Score=38.02 Aligned_cols=121 Identities=17% Similarity=0.086 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhc
Q 008629 283 LAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWA 362 (559)
Q Consensus 283 LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA 362 (559)
||..+.|++..+.+. +++++|+|+|.-|...+.++. + .|. +++.+|++ +.| ++..++-.|
T Consensus 12 la~a~~a~~~~~~~~-g~~vlV~G~G~vG~~~~~~ak-~----~Ga-------~vi~v~~~----~~r---~~~a~~~ga 71 (170)
T d1e3ja2 12 LSVGVHACRRAGVQL-GTTVLVIGAGPIGLVSVLAAK-A----YGA-------FVVCTARS----PRR---LEVAKNCGA 71 (170)
T ss_dssp HHHHHHHHHHHTCCT-TCEEEEECCSHHHHHHHHHHH-H----TTC-------EEEEEESC----HHH---HHHHHHTTC
T ss_pred HHHHHHHHHHhCCCC-CCEEEEEcccccchhhHhhHh-h----hcc-------cccccchH----HHH---HHHHHHcCC
Confidence 555577788776554 568899999988877664443 2 362 58888763 221 222222222
Q ss_pred cc----cCCCCCHHHHhc------ccCCcEEEeccCCCCCCCHHHHHHH-HcCCCCcEEEecCCCCCCCCCCHHHHh
Q 008629 363 HE----HEPVNNLLDAVK------VIKPTILIGSSGVGRTFTKEVIEAM-ASFNEKPLILALSNPTSQSECTAEEAY 428 (559)
Q Consensus 363 ~~----~~~~~~L~e~V~------~vkPtvLIG~S~~~g~Ft~evv~~M-a~~~erPIIFaLSNPt~~~EctpedA~ 428 (559)
.. .....+..+.++ .-++|+.|=+++.+ +.++.+ ....+.=.|.-+..|....+..+.+.+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~-----~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~ 143 (170)
T d1e3ja2 72 DVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNE-----KCITIGINITRTGGTLMLVGMGSQMVTVPLVNAC 143 (170)
T ss_dssp SEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCH-----HHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHH
T ss_pred cEEEeccccccccchhhhhhhcccccCCceeeecCCCh-----HHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHH
Confidence 11 111223443333 23589999888743 333322 111233344445565544556666554
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=87.48 E-value=0.22 Score=44.39 Aligned_cols=32 Identities=34% Similarity=0.366 Sum_probs=26.4
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+||.|+|||..|.|||-+++.. |. +++++|.+
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~-----G~-------~V~l~D~~ 36 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASK-----GT-------PILMKDIN 36 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHT-----TC-------CEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHhC-----CC-------eEEEEECC
Confidence 5799999999999999877653 64 68888874
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=87.33 E-value=0.23 Score=42.90 Aligned_cols=103 Identities=21% Similarity=0.273 Sum_probs=61.4
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC-ccccCCcCCCchhchhhcccc--CCCCCHHHHhcc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG-LIVSSRKDSLQHFKKPWAHEH--EPVNNLLDAVKV 377 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G-Li~~~R~~~l~~~k~~fA~~~--~~~~~L~e~V~~ 377 (559)
||.|+|||.-|..+|-.|+.. |+ -..+.|+|.+- +. ++..-+|.+....+-... ....+. |.++.
T Consensus 2 KI~IIGaG~VG~~~a~~l~~~-----~~-----~~elvL~Di~~~~~-~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~ 69 (142)
T d1ojua1 2 KLGFVGAGRVGSTSAFTCLLN-----LD-----VDEIALVDIAEDLA-VGEAMDLAHAAAGIDKYPKIVGGADY-SLLKG 69 (142)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----SC-----CSEEEEECSSHHHH-HHHHHHHHHHHHTTTCCCEEEEESCG-GGGTT
T ss_pred EEEEECcCHHHHHHHHHHHhc-----Cc-----CceEEEEecccchh-hHHHHHHhhhccccCCCCccccCCCH-HHhcc
Confidence 899999999999999876652 55 25699999541 11 000001222111111110 011244 55665
Q ss_pred cCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 378 IKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 378 vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
.|++|=+.+.+ |- .=+++.+.+.+++...|++--|||.
T Consensus 70 --adiVvitag~~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtNPv 121 (142)
T d1ojua1 70 --SEIIVVTAGLARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTNPM 121 (142)
T ss_dssp --CSEEEECCCCCCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSSSH
T ss_pred --ccEEEEeccccCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecCCh
Confidence 88888554433 21 2245777788899999999999997
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=87.14 E-value=0.4 Score=40.25 Aligned_cols=96 Identities=14% Similarity=0.041 Sum_probs=54.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcccc-CCCCCHHHHhcccC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEH-EPVNNLLDAVKVIK 379 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~-~~~~~L~e~V~~vk 379 (559)
||.|+|||+-|.-+|-.|.++ |. ++.++|+.-- +.+.+........... ....+..+.+..
T Consensus 2 kI~IiGaG~iG~~~a~~L~~~-----G~-------~V~~~~r~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 63 (167)
T d1ks9a2 2 KITVLGCGALGQLWLTALCKQ-----GH-------EVQGWLRVPQ----PYCSVNLVETDGSIFNESLTANDPDFLAT-- 63 (167)
T ss_dssp EEEEECCSHHHHHHHHHHHHT-----TC-------EEEEECSSCC----SEEEEEEECTTSCEEEEEEEESCHHHHHT--
T ss_pred EEEEECcCHHHHHHHHHHHHC-----CC-------ceEEEEcCHH----HhhhhccccCCccccccccccchhhhhcc--
Confidence 899999999999999888763 53 5777776421 1111110000000000 001234555664
Q ss_pred CcEEEeccCCCCCCCHHHHHHHHcC-CCCcEEEecCCC
Q 008629 380 PTILIGSSGVGRTFTKEVIEAMASF-NEKPLILALSNP 416 (559)
Q Consensus 380 PtvLIG~S~~~g~Ft~evv~~Ma~~-~erPIIFaLSNP 416 (559)
+|++| ++... --++++++.++.+ ++.-+|+.+.|=
T Consensus 64 ~D~ii-i~vka-~~~~~~~~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 64 SDLLL-VTLKA-WQVSDAVKSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp CSEEE-ECSCG-GGHHHHHHHHHTTSCTTSCEEEECSS
T ss_pred cceEE-Eeecc-cchHHHHHhhccccCcccEEeeccCc
Confidence 88888 33333 3588999988754 344556667773
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=86.98 E-value=0.3 Score=43.41 Aligned_cols=34 Identities=12% Similarity=0.203 Sum_probs=28.1
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+-+||+|+|||.||+..|-.|.+ .|+ ++.++|+.
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~-----~G~-------~v~v~Er~ 36 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRD-----AGV-------DVDVYERS 36 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHH-----CCC-------CEEEEeCC
Confidence 45799999999999999998765 375 68889863
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=86.95 E-value=0.23 Score=43.03 Aligned_cols=32 Identities=19% Similarity=0.391 Sum_probs=26.1
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||+|+|||.||+..|..|.+ .|+ ++.++|+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~-----~G~-------~V~vlE~~ 33 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKI-----HGL-------NVTVFEAE 33 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHT-----TSC-------EEEEECSS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 589999999999999998864 364 57788764
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=86.50 E-value=0.42 Score=39.57 Aligned_cols=36 Identities=19% Similarity=0.456 Sum_probs=27.9
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccC
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKG 344 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~G 344 (559)
..||||+|||.||+-+|..|.+. |- ..+|.++|++-
T Consensus 2 gkrivIvGgG~~G~e~A~~l~~~-----~~-----~~~Vtlie~~~ 37 (186)
T d1fcda1 2 GRKVVVVGGGTGGATAAKYIKLA-----DP-----SIEVTLIEPNT 37 (186)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHH-----CT-----TSEEEEECSCS
T ss_pred CCcEEEECccHHHHHHHHHHHHc-----CC-----CCcEEEEECCC
Confidence 35999999999999998888653 32 24788888763
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=85.34 E-value=2.1 Score=37.34 Aligned_cols=93 Identities=10% Similarity=0.145 Sum_probs=51.5
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc--c-Ccc---ccCCcCCCchhchhhccc-cCCCCCHHH
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS--K-GLI---VSSRKDSLQHFKKPWAHE-HEPVNNLLD 373 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~--~-GLi---~~~R~~~l~~~k~~fA~~-~~~~~~L~e 373 (559)
||.|+|||+-|+++|..+.+. | .++++..+ + -++ .+.|.. ..++..+-.. -....++.+
T Consensus 2 kI~ViGaG~~GtalA~~la~~-----g-------~~V~l~~r~~~~~~~~~i~~~~~~--~~~~~~~~~~~i~~~~~~~~ 67 (180)
T d1txga2 2 IVSILGAGAMGSALSVPLVDN-----G-------NEVRIWGTEFDTEILKSISAGREH--PRLGVKLNGVEIFWPEQLEK 67 (180)
T ss_dssp EEEEESCCHHHHHHHHHHHHH-----C-------CEEEEECCGGGHHHHHHHHTTCCB--TTTTBCCCSEEEECGGGHHH
T ss_pred EEEEECCCHHHHHHHHHHHHC-----C-------CEEEEEEecccHHHHHHHhhhhhh--hhhcchhccccccccccHHH
Confidence 799999999999999999763 4 35555532 1 011 111110 1111111000 011247899
Q ss_pred HhcccCCcEEEeccCCCCCCCHHHHHHHHcCCC-CcEEE
Q 008629 374 AVKVIKPTILIGSSGVGRTFTKEVIEAMASFNE-KPLIL 411 (559)
Q Consensus 374 ~V~~vkPtvLIG~S~~~g~Ft~evv~~Ma~~~e-rPIIF 411 (559)
+++. .|++|=+- +-...+++++.+..+-+ .+||+
T Consensus 68 ~~~~--ad~Ii~av--ps~~~~~~~~~l~~~l~~~~ii~ 102 (180)
T d1txga2 68 CLEN--AEVVLLGV--STDGVLPVMSRILPYLKDQYIVL 102 (180)
T ss_dssp HHTT--CSEEEECS--CGGGHHHHHHHHTTTCCSCEEEE
T ss_pred HHhc--cchhhccc--chhhhHHHHHhhccccccceecc
Confidence 9986 78775322 22457899998876543 34443
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=85.19 E-value=0.42 Score=42.56 Aligned_cols=32 Identities=22% Similarity=0.405 Sum_probs=26.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.||+|+|||.||+..|-.|.+. |. ++.++|+.
T Consensus 31 kkV~IIGaG~aGLsaA~~L~~~-----G~-------~V~vlE~~ 62 (370)
T d2iida1 31 KHVVIVGAGMAGLSAAYVLAGA-----GH-------QVTVLEAS 62 (370)
T ss_dssp CEEEEECCBHHHHHHHHHHHHH-----TC-------EEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHHC-----CC-------CEEEEeCC
Confidence 5899999999999999888653 64 68888875
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.52 E-value=1.4 Score=38.56 Aligned_cols=95 Identities=14% Similarity=0.142 Sum_probs=53.3
Q ss_pred cceEEEeCc-ChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhcc-ccCCCCCHHHHhc
Q 008629 299 EHRFLFLGA-GEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAH-EHEPVNNLLDAVK 376 (559)
Q Consensus 299 d~riv~~GA-GsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~-~~~~~~~L~e~V~ 376 (559)
-+||+|+|| |-.|..+++.|++ .|. ++..++++ .++.....+....+.. +..+..+|.++++
T Consensus 3 ~kkIlV~GatG~iG~~v~~~Ll~-----~g~-------~V~~~~R~----~~~~~~~~~~~~~~~~gD~~d~~~l~~al~ 66 (205)
T d1hdoa_ 3 VKKIAIFGATGQTGLTTLAQAVQ-----AGY-------EVTVLVRD----SSRLPSEGPRPAHVVVGDVLQAADVDKTVA 66 (205)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHH-----TTC-------EEEEEESC----GGGSCSSSCCCSEEEESCTTSHHHHHHHHT
T ss_pred CCEEEEECCCCHHHHHHHHHHHH-----CcC-------EEEEEEcC----hhhcccccccccccccccccchhhHHHHhc
Confidence 478999995 8899999988865 253 57777653 1110111111111211 2233346888888
Q ss_pred ccCCcEEEeccCCCCCC---------CHHHHHHHHcCCCCcEEE
Q 008629 377 VIKPTILIGSSGVGRTF---------TKEVIEAMASFNEKPLIL 411 (559)
Q Consensus 377 ~vkPtvLIG~S~~~g~F---------t~evv~~Ma~~~erPIIF 411 (559)
. .|++|=+.+..+.+ +..++++|.+++-+.+|+
T Consensus 67 ~--~d~vi~~~g~~~~~~~~~~~~~~~~~l~~aa~~~~v~r~i~ 108 (205)
T d1hdoa_ 67 G--QDAVIVLLGTRNDLSPTTVMSEGARNIVAAMKAHGVDKVVA 108 (205)
T ss_dssp T--CSEEEECCCCTTCCSCCCHHHHHHHHHHHHHHHHTCCEEEE
T ss_pred C--CCEEEEEeccCCchhhhhhhHHHHHHHHHHHHhcCCCeEEE
Confidence 6 78888665543322 235666666555444444
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=84.18 E-value=3.9 Score=35.40 Aligned_cols=52 Identities=15% Similarity=0.106 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 281 VVLAGVVAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 281 V~LAgll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
++...-++|+...+..-....|+|+|+|.-|+..+.++.. .|. ++|+.+|.+
T Consensus 12 Ca~~T~~~Av~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~-----~G~------~~Vi~vd~~ 63 (176)
T d1d1ta2 12 CGFSTGYGAAVKTGKVKPGSTCVVFGLGGVGLSVIMGCKS-----AGA------SRIIGIDLN 63 (176)
T ss_dssp THHHHHHHHHHTTSCCCTTCEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEECSC
T ss_pred hHHHHHHHHHHHhhCCCCCCEEEEECCCchhHHHHHHHHH-----cCC------ceEEEecCc
Confidence 4444556666555555567899999999887766655543 364 689999874
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=83.87 E-value=0.48 Score=41.84 Aligned_cols=107 Identities=20% Similarity=0.283 Sum_probs=65.2
Q ss_pred CcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc-CccccCCcCCCchhchhhcccc--CCCCCHH
Q 008629 296 TLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK-GLIVSSRKDSLQHFKKPWAHEH--EPVNNLL 372 (559)
Q Consensus 296 ~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~-GLi~~~R~~~l~~~k~~fA~~~--~~~~~L~ 372 (559)
.+...||.|+|||.-|..+|-.|+. .|+ ...+.|+|.+ .+. ++...+|.+. ..|.+.. ....+.+
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~-----~~l-----~~ElvLiD~~~~~a-~g~alDl~h~-~~~~~~~~~~~~~d~~ 84 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILG-----KSL-----ADELALVDVLEDKL-KGEMMDLQHG-SLFLQTPKIVADKDYS 84 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHH-----TTC-----CSEEEEECSCHHHH-HHHHHHHHHT-GGGCCCSEEEECSSGG
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHh-----cCC-----CcEEEEEEeccchh-HHHHHHHhcc-ccccCCCeEEeccchh
Confidence 3556799999999999999888865 376 2569999974 111 1100113221 1222211 1123333
Q ss_pred HHhcccCCcEEEeccCCC---CC-----------CCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 373 DAVKVIKPTILIGSSGVG---RT-----------FTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 373 e~V~~vkPtvLIG~S~~~---g~-----------Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
..+. .|++|=+.+.+ |- .=+++++.+++++...||.-.|||.
T Consensus 85 -~~~~--adiVVitAg~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvtNPv 140 (160)
T d1i0za1 85 -VTAN--SKIVVVTAGVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVSNPV 140 (160)
T ss_dssp -GGTT--CSEEEECCSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECSSSH
T ss_pred -hccc--ccEEEEecCCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeCCch
Confidence 3443 88777555543 11 1245677788899999999999998
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=83.25 E-value=0.85 Score=39.51 Aligned_cols=45 Identities=16% Similarity=0.149 Sum_probs=29.3
Q ss_pred HHHHHHhCCCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcc
Q 008629 287 VAALKLIGGTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDS 342 (559)
Q Consensus 287 l~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~ 342 (559)
+.|++-.++.-.+.+|+|+|||..|+..+.+... .|. ++|+.+|+
T Consensus 17 ~~al~~~~~~~~G~~VlV~GaG~iG~~~~~~ak~-----~Ga------~~Vi~~~~ 61 (182)
T d1vj0a2 17 YHAFDEYPESFAGKTVVIQGAGPLGLFGVVIARS-----LGA------ENVIVIAG 61 (182)
T ss_dssp HHHHHTCSSCCBTCEEEEECCSHHHHHHHHHHHH-----TTB------SEEEEEES
T ss_pred HHHHHHHhCCCCCCEEEEECCCccchhheecccc-----ccc------cccccccc
Confidence 3444433444467999999999777655554432 363 58998877
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=82.84 E-value=1.4 Score=39.16 Aligned_cols=85 Identities=16% Similarity=0.157 Sum_probs=66.4
Q ss_pred chhHHHHHHHHHHHHHhCCCcccceEEEeCcCh-HHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCc
Q 008629 277 GTASVVLAGVVAALKLIGGTLAEHRFLFLGAGE-AGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQ 355 (559)
Q Consensus 277 GTaaV~LAgll~Alr~~g~~l~d~riv~~GAGs-AgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~ 355 (559)
+-.-+|-.|++--++-.+.+++.++++|+|-+. -|.-+|.+|.. .|. .++.++++.
T Consensus 15 ~~~PcTp~aI~~lL~~y~i~l~GK~v~VIGrS~~VG~Pla~lL~~-----~ga-------tVt~~h~~t----------- 71 (166)
T d1b0aa1 15 RLRPCTPRGIVTLLERYNIDTFGLNAVVIGASNIVGRPMSMELLL-----AGC-------TTTVTHRFT----------- 71 (166)
T ss_dssp SSCCHHHHHHHHHHHHTTCCCTTCEEEEECCCTTTHHHHHHHHHT-----TTC-------EEEEECSSC-----------
T ss_pred CCCCchHHHHHHHHHHcCcccccceEEEEeccccccHHHHHHHHH-----hhc-------ccccccccc-----------
Confidence 445678889999999999999999999999987 67777766653 353 466666531
Q ss_pred hhchhhccccCCCCCHHHHhcccCCcEEEeccCCCCCCCHHHHH
Q 008629 356 HFKKPWAHEHEPVNNLLDAVKVIKPTILIGSSGVGRTFTKEVIE 399 (559)
Q Consensus 356 ~~k~~fA~~~~~~~~L~e~V~~vkPtvLIG~S~~~g~Ft~evv~ 399 (559)
.+|.+-++. +|++|-..+.++.+++++++
T Consensus 72 -------------~~l~~~~~~--ADivI~a~G~p~~i~~~~vk 100 (166)
T d1b0aa1 72 -------------KNLRHHVEN--ADLLIVAVGKPGFIPGDWIK 100 (166)
T ss_dssp -------------SCHHHHHHH--CSEEEECSCCTTCBCTTTSC
T ss_pred -------------chhHHHHhh--hhHhhhhccCcccccccccC
Confidence 246666765 99999999999999998885
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.73 E-value=0.43 Score=45.45 Aligned_cols=36 Identities=22% Similarity=0.445 Sum_probs=28.9
Q ss_pred ccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCc
Q 008629 298 AEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGL 345 (559)
Q Consensus 298 ~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GL 345 (559)
+..||+|+|||-+|+.+|..|.+ .| .++.++++..-
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k-----~G-------~~V~viEk~~~ 36 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAE-----KG-------HQVHIIDQRDH 36 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHT-----TT-------CEEEEEESSSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHh-----CC-------CCEEEEECCCC
Confidence 35799999999999999998864 25 47888888643
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.37 E-value=0.62 Score=40.50 Aligned_cols=33 Identities=15% Similarity=0.400 Sum_probs=26.2
Q ss_pred cceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 299 EHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 299 d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
..||+|+|||-||+..|..|.+ .|. ++.++.+.
T Consensus 5 ~~kViVIGaG~aGL~aA~~L~~-----~G~-------~V~VlEa~ 37 (449)
T d2dw4a2 5 TGKVIIIGSGVSGLAAARQLQS-----FGM-------DVTLLEAR 37 (449)
T ss_dssp CCEEEEECCBHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred CCcEEEECCCHHHHHHHHHHHh-----CCC-------CEEEEeCC
Confidence 4689999999999999999875 364 56666664
|
| >d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: N,N-dimethylglycine oxidase species: Arthrobacter globiformis [TaxId: 1665]
Probab=81.71 E-value=0.57 Score=42.92 Aligned_cols=32 Identities=28% Similarity=0.502 Sum_probs=26.7
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
+|||+|||.+|+.+|-.|.+ .|. +++.++|+.
T Consensus 3 dViIIGaGi~G~s~A~~La~-----~G~------~~V~liE~~ 34 (305)
T d1pj5a2 3 RIVIIGAGIVGTNLADELVT-----RGW------NNITVLDQG 34 (305)
T ss_dssp CEEEECCSHHHHHHHHHHHH-----TTC------CCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHH-----cCC------CcEEEEeCC
Confidence 69999999999999988764 365 469999986
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.40 E-value=0.68 Score=41.55 Aligned_cols=35 Identities=23% Similarity=0.405 Sum_probs=28.6
Q ss_pred cccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 297 LAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 297 l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
-...||+|+|||.||+..|..+.+ .|. ++.++|+.
T Consensus 47 ~~~k~VvIIGaGpAGl~aA~~l~~-----~G~-------~v~l~E~~ 81 (233)
T d1djqa3 47 KNKDSVLIVGAGPSGSEAARVLME-----SGY-------TVHLTDTA 81 (233)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHH-----TTC-------EEEEECSS
T ss_pred cCCceEEEEcccHHHHHHHHHHHH-----hcc-------ceeeEeec
Confidence 356899999999999999998865 375 58888865
|
| >d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Adrenodoxin reductase of mitochondrial p450 systems species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.20 E-value=0.78 Score=40.52 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=26.6
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
||+|+|||.||+..|..|..+ |. --++.++|+.
T Consensus 3 kv~iIGaGpaGl~aA~~L~~~-----~~-----~~~V~v~e~~ 35 (230)
T d1cjca2 3 QICVVGSGPAGFYTAQHLLKH-----HS-----RAHVDIYEKQ 35 (230)
T ss_dssp EEEEECCSHHHHHHHHHHHHH-----CS-----SCEEEEECSS
T ss_pred eEEEECccHHHHHHHHHHHhc-----CC-----CCeEEEEeCC
Confidence 899999999999999998775 22 1368888875
|
| >d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monooxygenase PhzS species: Pseudomonas aeruginosa [TaxId: 287]
Probab=81.07 E-value=0.67 Score=40.90 Aligned_cols=33 Identities=27% Similarity=0.338 Sum_probs=25.6
Q ss_pred ceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 300 HRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 300 ~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.+|+|+|||.||+..|-+|.+ .|+ .++.++++.
T Consensus 2 ~~V~IvGaG~aGl~~A~~L~~-----~Gi------~~V~V~Er~ 34 (288)
T d3c96a1 2 IDILIAGAGIGGLSCALALHQ-----AGI------GKVTLLESS 34 (288)
T ss_dssp CEEEEECCSHHHHHHHHHHHH-----TTC------SEEEEEESS
T ss_pred CEEEEECcCHHHHHHHHHHHh-----CCC------CeEEEEeCC
Confidence 379999999999999988875 375 356666664
|
| >d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Phenylacetone monooxygenase species: Thermobifida fusca [TaxId: 2021]
Probab=80.52 E-value=0.74 Score=43.67 Aligned_cols=37 Identities=16% Similarity=0.167 Sum_probs=30.6
Q ss_pred CCcccceEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEccc
Q 008629 295 GTLAEHRFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSK 343 (559)
Q Consensus 295 ~~l~d~riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~ 343 (559)
.|.++..|+|+|||.+|+..|..|.+ .|+ ++.++|+.
T Consensus 3 ~p~~~~dV~IIGAG~sGl~~a~~L~~-----~G~-------~v~i~Ek~ 39 (298)
T d1w4xa1 3 QPPEEVDVLVVGAGFSGLYALYRLRE-----LGR-------SVHVIETA 39 (298)
T ss_dssp CCCSEEEEEEECCSHHHHHHHHHHHH-----TTC-------CEEEECSS
T ss_pred CCCCCCCEEEECccHHHHHHHHHHHh-----CCC-------CEEEEEcC
Confidence 46778899999999999999998864 476 47788875
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=80.35 E-value=0.72 Score=39.40 Aligned_cols=89 Identities=11% Similarity=0.165 Sum_probs=56.1
Q ss_pred eEEEeCcChHHHHHHHHHHHHHHHhcCCChhhhcccEEEEcccCccccCCcCCCchhchhhccccCCCCCHHHHhcccCC
Q 008629 301 RFLFLGAGEAGTGIAELIALEISKQTKAPVEETRKKICLVDSKGLIVSSRKDSLQHFKKPWAHEHEPVNNLLDAVKVIKP 380 (559)
Q Consensus 301 riv~~GAGsAgiGia~ll~~~~~~~~G~s~eeA~~~i~lvD~~GLi~~~R~~~l~~~k~~fA~~~~~~~~L~e~V~~vkP 380 (559)
||.|+|+|..|.++++-|... | .++++.|+. . +.+...++.|. .....+..|+++. .
T Consensus 2 kIg~IG~G~mG~al~~~l~~~-----~-------~~i~v~~r~----~---~~~~~l~~~~g--~~~~~~~~~~~~~--~ 58 (152)
T d2ahra2 2 KIGIIGVGKMASAIIKGLKQT-----P-------HELIISGSS----L---ERSKEIAEQLA--LPYAMSHQDLIDQ--V 58 (152)
T ss_dssp EEEEECCSHHHHHHHHHHTTS-----S-------CEEEEECSS----H---HHHHHHHHHHT--CCBCSSHHHHHHT--C
T ss_pred EEEEEeccHHHHHHHHHHHhC-----C-------CeEEEEcCh----H---HhHHhhccccc--eeeechhhhhhhc--c
Confidence 799999999999988876531 2 578877653 1 12333333332 1223578999985 8
Q ss_pred cEEEeccCCCCCCCHHHHHHHHcCCCCcEEEecCCCC
Q 008629 381 TILIGSSGVGRTFTKEVIEAMASFNEKPLILALSNPT 417 (559)
Q Consensus 381 tvLIG~S~~~g~Ft~evv~~Ma~~~erPIIFaLSNPt 417 (559)
|++| ++-.|. .-+++++.+ .+..+|..+....
T Consensus 59 dvIi-lavkp~-~~~~vl~~l---~~~~~iis~~agi 90 (152)
T d2ahra2 59 DLVI-LGIKPQ-LFETVLKPL---HFKQPIISMAAGI 90 (152)
T ss_dssp SEEE-ECSCGG-GHHHHHTTS---CCCSCEEECCTTC
T ss_pred ceee-eecchH-hHHHHhhhc---ccceeEecccccc
Confidence 8877 555453 345666544 4677777777765
|