Citrus Sinensis ID: 008659

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH
ccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccEEEEEcccccEEEEEEEEEEEEEccccccccccccccccccccccccEEEEEEEcccccccccccccHHHHcccccccccccEEEEEEEEEEccccccEEEEEEEccccEEEEEEEEEEccccccEEEEEcccccccccccccEEEEcccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHcccccHHHcccccccccccccccccccccccccHHHHHHHHccccHHHHHHHcccEEEEccccccccccccccccccEEEcccEEEEEEcccccEEEEEEEEEcccccccccccEEEcccccccccHHHHHHHHHHHHccccEEEEccc
cccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccEEEEEccccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHHcccEEEEEEEcccccccccccccHHHHHccccccccccEEEEEEEEEccccccccEEEEEEccccEEEEEEEEEcccccccEEEEEEEEEcEHHHccccEEEEccccccHHHccHHHHHHHHHHHHHHHcccccccccccccccEEcEcccccHHHcHHHccccEcccccccccEEcccccEcccccccEcccccccccHHHccccccHHHcHHHHHHHHHHcHHHHHHHHHcccccccccHHHHHHHHHcccccccccHHHHHHcHcccHHHHcEEEcccEEEccccHHHcccccHHHcHHHHHHHHHHcccccccEEccccccccccccccccccccccccccccccccccccHHHHHHcccEEEEEcHHHHHHHHHHHHccccccccEEEEEEEEcccccEEEEEEEEEccccccHccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHH
mlkpqvhqpqsikplfplskpflhgnyghafrpvqststlfkgspklrigsvprntIKAIATSTEKSIKVKAVVTVkptvggflsnisldqglddlgDLFGKSLLLELVSaeldpktgldksTIQDYARKigadgdgnmqyesefevpsgfgeIGAILVENEHHKEMYLKDivldglpngpvnvtcnswlhskhdnkqkrvfftnklylpsqtpdglkrYRAEELTIlrgngqgerktydriydydvyndlgdpdkkpelarpvlggkqnpyprrcrtgrprcdtdqfsekregnfyvprdeaFSEVKQLTFSAKTVYSVLHALVPsletafvdpdlgfpyFSAIDALFnegvnlpplkqegfwnTLLPRLVKAIEDTgdnillfetpetmdrdkffwfrdeefsrqtlaglnpysirlitewplkstldpeiygppesaiTTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKsttlygsrtiffltpagtlrpiaieltrppmngkpqwkqvflpswhstECWLWKLAKAHVLAhdagyhqlvsh
mlkpqvhqpqsikplfPLSKPFLHGNYGHAFRPVQSTSTLFkgspklrigsvprnTIKAIatsteksikvkaVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVsaeldpktgldkstIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKlylpsqtpdglkryRAEEltilrgngqgerktydrIYDYDVyndlgdpdkkpelarpvlggkqnpyprrcrtgrprcdtdqfsekregnfyvprdEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGdnillfetpetmdrDKFFWFRDEEFSrqtlaglnpySIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTiffltpagtlrPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH
MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIkvkavvtvkptvGGFLSNISldqglddlgdlfgkslllelVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH
***************FPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGL***TIQDYARKIG********YESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDL********************************************FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQ****
***********************************************************************AVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLE********************ARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRT****************NFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIE**************VFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH
**********SIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH
************KPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLKPQVHQPQSIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query558 2.2.26 [Sep-21-2011]
O24370 899 Linoleate 13S-lipoxygenas N/A no 0.978 0.607 0.611 0.0
Q84YK8 941 Probable lipoxygenase 8, yes no 0.865 0.513 0.559 1e-158
P38418 896 Lipoxygenase 2, chloropla yes no 0.860 0.535 0.529 1e-153
P38419 924 Lipoxygenase 7, chloropla no no 0.856 0.517 0.549 1e-150
Q8GSM2 896 Lipoxygenase 2.3, chlorop N/A no 0.894 0.556 0.527 1e-149
P93184 936 Lipoxygenase 2.1, chlorop N/A no 0.894 0.533 0.506 1e-133
Q8H016 918 Probable lipoxygenase 6 O no no 0.906 0.551 0.445 1e-123
Q9FNX8 926 Lipoxygenase 4, chloropla no no 0.908 0.547 0.444 1e-122
Q9LNR3 919 Lipoxygenase 3, chloropla no no 0.869 0.527 0.456 1e-121
Q7XV13 899 Putative lipoxygenase 5 O no no 0.822 0.510 0.469 1e-120
>sp|O24370|LOX21_SOLTU Linoleate 13S-lipoxygenase 2-1, chloroplastic OS=Solanum tuberosum GN=LOX2.1 PE=1 SV=1 Back     alignment and function desciption
 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/569 (61%), Positives = 434/569 (76%), Gaps = 23/569 (4%)

Query: 1   MLKPQVHQP-QSIKPLFPL--SKPFLHGNYGHAFRPVQSTSTLF----KGSPKLRIGSVP 53
           MLKPQ+ Q  QS K L P   + P    ++     P+   +  F    K + ++      
Sbjct: 1   MLKPQLQQSSQSTKALIPSWNTNPLFLASF-----PINILNKNFRLKKKNNFRVHHNYNG 55

Query: 54  RNTIKAIATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAEL 113
            +T KA+ +STEK+  VKAVVTV+  V     N++L +GLDD+GDL GKSLLL +V+AEL
Sbjct: 56  ASTTKAVLSSTEKATGVKAVVTVQKQV-----NLNLSRGLDDIGDLLGKSLLLWIVAAEL 110

Query: 114 DPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIV 173
           D KTG++K  I+ YA + G D DG+  YE++F +P  FGE+GAIL+ENEHHKEMY+K+IV
Sbjct: 111 DHKTGIEKPGIRAYAHR-GRDVDGDTHYEADFVIPQDFGEVGAILIENEHHKEMYVKNIV 169

Query: 174 LDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQ 233
           +DG  +G V +TCNSW+HSK DN  KR+FFTNK YLPSQTP G+ R R EEL  LRG+G 
Sbjct: 170 IDGFVHGKVEITCNSWVHSKFDNPDKRIFFTNKSYLPSQTPSGVSRLREEELVTLRGDGI 229

Query: 234 GERKTYDRIYDYDVYNDLGDPDKKPELA-RPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR 292
           GERK ++RIYDYDVYNDLG+ D   + A RPVLGGK+ PYPRRC+TGRPR   D  SE R
Sbjct: 230 GERKVFERIYDYDVYNDLGEADSNNDDAKRPVLGGKELPYPRRCKTGRPRSKKDPLSETR 289

Query: 293 EGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEG 352
               YVPRDEAFSEVK + FS  TVYSVLHA+VP+LE+   DP+LGFP+F AID+LFN G
Sbjct: 290 STFVYVPRDEAFSEVKSVAFSGNTVYSVLHAVVPALESVVTDPNLGFPHFPAIDSLFNVG 349

Query: 353 VNLPPL--KQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLA 410
           V+LP L  K+ G +N ++PRL+KAI DT  ++LLFE+P+ + RDKF WFRD EF+RQTLA
Sbjct: 350 VDLPGLGDKKSGLFN-VVPRLIKAISDTRKDVLLFESPQLVQRDKFSWFRDVEFARQTLA 408

Query: 411 GLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDY 470
           GLNPYSIRL+TEWPL+S LDP++YGPPES IT ELIEKEIG  ++VE+A++QKKLFILDY
Sbjct: 409 GLNPYSIRLVTEWPLRSKLDPKVYGPPESEITKELIEKEIGNYMTVEQAVQQKKLFILDY 468

Query: 471 HDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPS- 529
           HDL LPYV KV +LK + LYGSRTIFFLTP GTL+P+AIELTRPP++ KPQWK+V+ P+ 
Sbjct: 469 HDLLLPYVNKVNELKGSMLYGSRTIFFLTPQGTLKPLAIELTRPPVDDKPQWKEVYSPND 528

Query: 530 WHSTECWLWKLAKAHVLAHDAGYHQLVSH 558
           W++T  WLWKLAKAHVL+HD+GYHQLVSH
Sbjct: 529 WNATGAWLWKLAKAHVLSHDSGYHQLVSH 557
Plant lipoxygenase involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence. May not be involved in the bulk production of jasmonate upon wounding. Catalyzes the hydroperoxidation of lipids containing a cis,cis-1,4-pentadiene structure. Linolenic acid is the preferred substrate, before linoleic and arachidonic acids. Has also some activity with phosphatidylglycerol, but not with galactolipids.
Solanum tuberosum (taxid: 4113)
EC: 1EC: .EC: 1EC: 3EC: .EC: 1EC: 1EC: .EC: 1EC: 2
>sp|Q84YK8|LOXC2_ORYSJ Probable lipoxygenase 8, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX2 PE=2 SV=1 Back     alignment and function description
>sp|P38418|LOX2_ARATH Lipoxygenase 2, chloroplastic OS=Arabidopsis thaliana GN=LOX2 PE=1 SV=1 Back     alignment and function description
>sp|P38419|LOXC1_ORYSJ Lipoxygenase 7, chloroplastic OS=Oryza sativa subsp. japonica GN=CM-LOX1 PE=2 SV=2 Back     alignment and function description
>sp|Q8GSM2|LOX23_HORVU Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1 Back     alignment and function description
>sp|P93184|LOX21_HORVU Lipoxygenase 2.1, chloroplastic OS=Hordeum vulgare GN=LOX2.1 PE=1 SV=1 Back     alignment and function description
>sp|Q8H016|LOX6_ORYSJ Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2 Back     alignment and function description
>sp|Q9FNX8|LOX4_ARATH Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1 Back     alignment and function description
>sp|Q9LNR3|LOX3_ARATH Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1 Back     alignment and function description
>sp|Q7XV13|LOX5_ORYSJ Putative lipoxygenase 5 OS=Oryza sativa subsp. japonica GN=Os04g0447100 PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
224053392 897 predicted protein [Populus trichocarpa] 0.992 0.617 0.694 0.0
71999169 898 lipoxygenase LOX1 [Populus deltoides] 0.994 0.618 0.676 0.0
224103783565 predicted protein [Populus trichocarpa] 0.994 0.982 0.677 0.0
255544764 900 lipoxygenase, putative [Ricinus communis 0.994 0.616 0.677 0.0
229554825 901 lipoxygenase [Camellia sinensis] 0.983 0.609 0.672 0.0
308943877 901 lipoxygenase [Camellia sinensis] 0.983 0.609 0.674 0.0
213876486 900 lipoxygenase [Camellia sinensis] 0.987 0.612 0.674 0.0
71999171 903 lipoxygenase LOX2 [Populus deltoides] 0.996 0.615 0.671 0.0
32454712 900 lipoxygenase, partial [Nicotiana attenua 0.989 0.613 0.640 0.0
312837045 889 lipoxygenase [Vitis hybrid cultivar] 0.994 0.624 0.642 0.0
>gi|224053392|ref|XP_002297796.1| predicted protein [Populus trichocarpa] gi|222845054|gb|EEE82601.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  807 bits (2085), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 388/559 (69%), Positives = 466/559 (83%), Gaps = 5/559 (0%)

Query: 1   MLKPQVHQPQ-SIKPLFPLSKPFLHGNYGHAFRPVQSTSTLFKGSPKLRIGSVPRNTIKA 59
           MLKPQ+HQ   S K  F L KPF+HG+ GHA  PV S S   K + K+R+G     +IK+
Sbjct: 1   MLKPQLHQSHLSTKIPFLLPKPFIHGS-GHASFPVYSRSLSTKANKKVRVG-YKHGSIKS 58

Query: 60  IATSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGL 119
           IA+ T++S  VKAVVTVK TV  F + I +++GLDD  DLFGK+LLLELVSAELDPKTGL
Sbjct: 59  IASVTQQSTDVKAVVTVKQTVVDFWTEIGIERGLDDFTDLFGKTLLLELVSAELDPKTGL 118

Query: 120 DKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN 179
           +K +I+ YA KI  +G+ +++YE++F VP  FGEIGAI VENEHHKEMYL D+VLDG P 
Sbjct: 119 EKPSIRKYAHKIDHEGE-DIKYEADFVVPPDFGEIGAIFVENEHHKEMYLHDVVLDGFPT 177

Query: 180 GPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTY 239
           GPV+VTC+SW+HSK DNK+KR+FFTNK YLPSQTP G++R R EEL +LRGNGQG+RK  
Sbjct: 178 GPVHVTCDSWIHSKFDNKKKRLFFTNKSYLPSQTPSGIRRLREEELVLLRGNGQGQRKAG 237

Query: 240 DRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVP 299
           DRIYDYDVYND+G+PDKKPELARPVLGGK++PYPRRCRTGRPRC+TD  SEKR   FYVP
Sbjct: 238 DRIYDYDVYNDIGNPDKKPELARPVLGGKEHPYPRRCRTGRPRCETDPSSEKRVSAFYVP 297

Query: 300 RDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLK 359
           RDEAFSEVKQLTFSAKT+YS+ HAL+PS+     D +LGFPY +AID+LF+EG+ +PPL 
Sbjct: 298 RDEAFSEVKQLTFSAKTLYSLFHALIPSIGNVIDDANLGFPYMTAIDSLFSEGIEMPPLT 357

Query: 360 QEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRL 419
           +EGFW  ++PRL K I   GD +L FE P+ M+RDKFFWF+DEEF+RQTLAGLNPYSI+ 
Sbjct: 358 KEGFWKEVMPRLFKVIAGGGD-VLRFEVPKPMERDKFFWFKDEEFARQTLAGLNPYSIKS 416

Query: 420 ITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVE 479
           +TEWPLKS LDPEIYGPPESAIT+EL+E EIGG+  V++AI++KKLFILDYHDL LP+V 
Sbjct: 417 VTEWPLKSELDPEIYGPPESAITSELLEAEIGGVTRVDKAIREKKLFILDYHDLLLPFVS 476

Query: 480 KVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWK 539
           KVR++K TTLYGSRT+FFLTP GTLRP+AIELTRPPM+GKPQWKQVF P +HST CWLW+
Sbjct: 477 KVREIKGTTLYGSRTVFFLTPEGTLRPLAIELTRPPMDGKPQWKQVFTPCYHSTGCWLWR 536

Query: 540 LAKAHVLAHDAGYHQLVSH 558
           LAKAHVLAHD+G+HQLVSH
Sbjct: 537 LAKAHVLAHDSGFHQLVSH 555

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|71999169|gb|AAZ57444.1| lipoxygenase LOX1 [Populus deltoides] Back     alignment and taxonomy information
>gi|224103783|ref|XP_002334016.1| predicted protein [Populus trichocarpa] gi|222839571|gb|EEE77908.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255544764|ref|XP_002513443.1| lipoxygenase, putative [Ricinus communis] gi|223547351|gb|EEF48846.1| lipoxygenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|229554825|gb|ACQ76787.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|308943877|gb|ADO51752.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|213876486|gb|ACJ54281.1| lipoxygenase [Camellia sinensis] Back     alignment and taxonomy information
>gi|71999171|gb|AAZ57445.1| lipoxygenase LOX2 [Populus deltoides] Back     alignment and taxonomy information
>gi|32454712|gb|AAP83137.1| lipoxygenase, partial [Nicotiana attenuata] Back     alignment and taxonomy information
>gi|312837045|dbj|BAJ34928.1| lipoxygenase [Vitis hybrid cultivar] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
TAIR|locus:2096915 896 LOX2 "lipoxygenase 2" [Arabido 0.788 0.491 0.54 2.9e-135
UNIPROTKB|P38419 924 CM-LOX1 "Lipoxygenase 7, chlor 0.806 0.487 0.555 6e-135
TAIR|locus:2030215 926 LOX4 "lipoxygenase 4" [Arabido 0.799 0.481 0.463 2.3e-110
TAIR|locus:2018848 919 LOX3 "lipoxygenase 3" [Arabido 0.799 0.485 0.461 1.5e-108
TAIR|locus:2008808 917 LOX6 "lipoxygenase 6" [Arabido 0.799 0.486 0.436 1.7e-98
TAIR|locus:2011030 859 LOX1 "lipoxygenase 1" [Arabido 0.790 0.513 0.414 4.5e-82
TAIR|locus:2087837 886 LOX5 [Arabidopsis thaliana (ta 0.736 0.463 0.406 1.6e-79
UNIPROTKB|P29250 870 LOX1.1 "Linoleate 9S-lipoxygen 0.749 0.480 0.399 2.8e-73
MGI|MGI:87999 674 Alox5 "arachidonate 5-lipoxyge 0.358 0.296 0.266 1.1e-07
ZFIN|ZDB-GENE-061013-229 663 zgc:152891 "zgc:152891" [Danio 0.356 0.300 0.272 1.5e-06
TAIR|locus:2096915 LOX2 "lipoxygenase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1325 (471.5 bits), Expect = 2.9e-135, P = 2.9e-135
 Identities = 243/450 (54%), Positives = 325/450 (72%)

Query:   113 LDPKTGLDKSTIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDI 172
             +  KT   + T++DYA+++ A+     +YE EFE+P  FG +GAI ++N++H++++LK +
Sbjct:   111 ISAKTD-QRITVEDYAQRVWAEAPDE-KYECEFEMPEDFGPVGAIKIQNQYHRQLFLKGV 168

Query:   173 VLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNG 232
              L  LP G +  TC SW+  K  +  KR+FF++K YLPSQTP+ LK+YR EEL  L+G  
Sbjct:   169 ELK-LPGGSITFTCESWVAPKSVDPTKRIFFSDKSYLPSQTPEPLKKYRKEELETLQGKN 227

Query:   233 Q---GERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFS 289
             +   GE   ++RIYDYDVYND+GDPD  PELARPV+GG  +PYPRRC+TGR  C+TD  S
Sbjct:   228 REEVGEFTKFERIYDYDVYNDVGDPDNDPELARPVIGGLTHPYPRRCKTGRKPCETDPSS 287

Query:   290 EKREGN-FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDAL 348
             E+R G  FYVPRDE FS  K  +F+ K V + L ++ P +E+  + P   FP+F AI  L
Sbjct:   288 EQRYGGEFYVPRDEEFSTAKGTSFTGKAVLAALPSIFPQIESVLLSPQEPFPHFKAIQNL 347

Query:   349 FNEGVNLPPLKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQT 408
             F EG+ LP  K  G    LLPR++KA+ +  D+IL F+ P  ++RD+F W RD+EF+RQT
Sbjct:   348 FEEGIQLP--KDAGLL-PLLPRIIKALGEAQDDILQFDAPVLINRDRFSWLRDDEFARQT 404

Query:   409 LAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFIL 468
             LAGLNPYSI+L+ EWPL S LDP +YG P S IT E++E+E+ G ++V+EA+K K+LF+L
Sbjct:   405 LAGLNPYSIQLVEEWPLISKLDPAVYGDPTSLITWEIVEREVKGNMTVDEALKNKRLFVL 464

Query:   469 DYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLP 528
             DYHDL LPYV KVR+L +TTLY SRT+FFL+   TLRP+AIELT PP   KPQWKQVF P
Sbjct:   465 DYHDLLLPYVNKVRELNNTTLYASRTLFFLSDDSTLRPVAIELTCPPNINKPQWKQVFTP 524

Query:   529 SWHSTECWLWKLAKAHVLAHDAGYHQLVSH 558
              + +T CWLW LAK H ++HDAGYHQL+SH
Sbjct:   525 GYDATSCWLWNLAKTHAISHDAGYHQLISH 554
GO:0009507 "chloroplast" evidence=ISM;ISS;IDA;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA
GO:0009611 "response to wounding" evidence=IEP;RCA
GO:0080027 "response to herbivore" evidence=IEP
GO:0009941 "chloroplast envelope" evidence=IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009753 "response to jasmonic acid stimulus" evidence=IEP
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009617 "response to bacterium" evidence=IEP
GO:0016165 "lipoxygenase activity" evidence=IMP;IDA
GO:0009620 "response to fungus" evidence=IEP
GO:0034440 "lipid oxidation" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000096 "sulfur amino acid metabolic process" evidence=RCA
GO:0006546 "glycine catabolic process" evidence=RCA
GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA
GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA
GO:0006766 "vitamin metabolic process" evidence=RCA
GO:0006816 "calcium ion transport" evidence=RCA
GO:0007030 "Golgi organization" evidence=RCA
GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA
GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA
GO:0009106 "lipoate metabolic process" evidence=RCA
GO:0009108 "coenzyme biosynthetic process" evidence=RCA
GO:0009117 "nucleotide metabolic process" evidence=RCA
GO:0009269 "response to desiccation" evidence=RCA
GO:0009409 "response to cold" evidence=RCA
GO:0009416 "response to light stimulus" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009695 "jasmonic acid biosynthetic process" evidence=IMP;RCA;TAS
GO:0009737 "response to abscisic acid stimulus" evidence=RCA
GO:0015994 "chlorophyll metabolic process" evidence=RCA
GO:0015995 "chlorophyll biosynthetic process" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA
GO:0019216 "regulation of lipid metabolic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA
GO:0019748 "secondary metabolic process" evidence=RCA
GO:0030003 "cellular cation homeostasis" evidence=RCA
GO:0031408 "oxylipin biosynthetic process" evidence=RCA
GO:0044272 "sulfur compound biosynthetic process" evidence=RCA
GO:0070838 "divalent metal ion transport" evidence=RCA
GO:0009414 "response to water deprivation" evidence=TAS
GO:0051707 "response to other organism" evidence=TAS
UNIPROTKB|P38419 CM-LOX1 "Lipoxygenase 7, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2030215 LOX4 "lipoxygenase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2018848 LOX3 "lipoxygenase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008808 LOX6 "lipoxygenase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2011030 LOX1 "lipoxygenase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087837 LOX5 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P29250 LOX1.1 "Linoleate 9S-lipoxygenase 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
MGI|MGI:87999 Alox5 "arachidonate 5-lipoxygenase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061013-229 zgc:152891 "zgc:152891" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.13.11LOW CONFIDENCE prediction!
3rd Layer1.13.11.120.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh4_pg.C_LG_I000375
hypothetical protein; Plant lipoxygenase may be involved in a number of diverse aspects of plant physiology including growth and development, pest resistance, and senescence or responses to wounding (By similarity) (897 aa)
(Populus trichocarpa)
Predicted Functional Partners:
CYP74A1
cytochrome P450 allene oxide synthase (EC-4.2.1.92) (526 aa)
     •• 0.902
gw1.XVIII.245.1
SubName- Full=Putative uncharacterized protein; (138 aa)
     •  0.899
gw1.XVI.1394.1
hypothetical protein (823 aa)
     •  0.899
gw1.40.286.1
phospholipase A1 (EC-3.1.1.32) (357 aa)
     •  0.899
fgenesh4_pg.C_LG_II001255
phospholipase A1 (EC-3.1.1.32) (367 aa)
     •  0.899
eugene3.00060391
hypothetical protein (856 aa)
     •  0.899
CYP74B7
cytochrome P450 fatty acid hydroperoxide lyase (492 aa)
     •  0.899
estExt_fgenesh4_pg.C_LG_VIII0936
SubName- Full=Putative uncharacterized protein; (642 aa)
     •  0.899
grail3.0064002701
SubName- Full=Putative uncharacterized protein; (382 aa)
      • 0.502

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
PLN02305 918 PLN02305, PLN02305, lipoxygenase 1e-167
PLN02264 919 PLN02264, PLN02264, lipoxygenase 1e-166
PLN02337 866 PLN02337, PLN02337, lipoxygenase 1e-147
pfam00305 667 pfam00305, Lipoxygenase, Lipoxygenase 1e-139
cd01751137 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipox 1e-54
smart00308105 smart00308, LH2, Lipoxygenase homology 2 (beta bar 7e-18
pfam01477115 pfam01477, PLAT, PLAT/LH2 domain 2e-11
>gnl|CDD|215174 PLN02305, PLN02305, lipoxygenase Back     alignment and domain information 
 Score =  497 bits (1280), Expect = e-167
 Identities = 235/504 (46%), Positives = 328/504 (65%), Gaps = 10/504 (1%)

Query: 62  TSTEKSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK 121
           +     I V+AV+T++  +   ++    DQ  +   +  G+ +L++LVS E+DP TG  K
Sbjct: 76  SKYAGGIDVRAVITIRKKIKEKITEKFEDQ-WEYFMNGIGQGILIQLVSEEIDPVTGSGK 134

Query: 122 STIQDYARKIGADGDGN---MQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLP 178
           S ++   R        +   ++Y ++F VP  FG+ GA+LV N H KE YL +IV+ G  
Sbjct: 135 S-VESSVRGWLPKPSNDPHIVEYAADFTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFD 193

Query: 179 NGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKT 238
           +GP+    N+W+HS+ DN + R+ F N+ YLPSQTP G+K  R E+L  LRGNG+GERK 
Sbjct: 194 DGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRREDLLSLRGNGKGERKP 253

Query: 239 YDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKR---EGN 295
           +DRIYDY  YNDLG+PDK  +LARPVLGG++ PYPRRCRTGRP    D   E R      
Sbjct: 254 HDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHP 313

Query: 296 FYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNL 355
            YVPRDE F E+K+ TFSA  + ++LH L+PS+  A    D+ F  FS ID L+N+G+ L
Sbjct: 314 VYVPRDETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILL 373

Query: 356 PPLK-QEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNP 414
              + ++   N  L   +K +    + +L ++ P  + RD+F W RD EF+RQ LAG+NP
Sbjct: 374 KTEEPKDIGLNPFLGNFMKQVLSVSERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNP 433

Query: 415 YSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLF 474
            +I ++ E+P+ S LDP +YGPPESA+T ELIE+E+ GM +VE+AI++K+LFILDYHD+ 
Sbjct: 434 VNIEILKEFPILSKLDPAVYGPPESALTEELIERELEGM-TVEKAIEEKRLFILDYHDML 492

Query: 475 LPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTE 534
           LP++EK+  L     Y SRT+FF + AG LRPIAIEL+ PP    P  K V+     +T 
Sbjct: 493 LPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATT 552

Query: 535 CWLWKLAKAHVLAHDAGYHQLVSH 558
            W+WKLAKAHV ++DAG HQLV+H
Sbjct: 553 HWIWKLAKAHVCSNDAGVHQLVNH 576

Length = 918
>gnl|CDD|215148 PLN02264, PLN02264, lipoxygenase Back     alignment and domain information
>gnl|CDD|215193 PLN02337, PLN02337, lipoxygenase Back     alignment and domain information
>gnl|CDD|215847 pfam00305, Lipoxygenase, Lipoxygenase Back     alignment and domain information
>gnl|CDD|238849 cd01751, PLAT_LH2, PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>gnl|CDD|214608 smart00308, LH2, Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>gnl|CDD|216521 pfam01477, PLAT, PLAT/LH2 domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 558
PLN02305 918 lipoxygenase 100.0
PLN02264 919 lipoxygenase 100.0
PLN02337 866 lipoxygenase 100.0
PF00305 667 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Li 100.0
cd01751137 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase re 100.0
smart00308105 LH2 Lipoxygenase homology 2 (beta barrel) domain. 99.29
PF01477113 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxyg 98.87
cd00113116 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin 98.71
cd02899109 PLAT_SR Scavenger receptor protein. A subfamily of 98.3
cd01753113 PLAT_LOX PLAT domain of 12/15-lipoxygenase. As a u 97.94
cd01756120 PLAT_repeat PLAT/LH2 domain repeats of family of p 97.88
cd01757114 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 inter 97.7
cd01752120 PLAT_polycystin PLAT/LH2 domain of polycystin-1 li 97.61
cd01754129 PLAT_plant_stress PLAT/LH2 domain of plant-specifi 97.23
>PLN02305 lipoxygenase Back     alignment and domain information 
Probab=100.00  E-value=3.4e-154  Score=1286.50  Aligned_cols=487  Identities=47%  Similarity=0.864  Sum_probs=451.7

Q ss_pred             eEEeEEEEeeccccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc---eeccccccccCCCCCCceEEEEE
Q 008659           68 IKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK---STIQDYARKIGADGDGNMQYESE  144 (558)
Q Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~~---~~l~~~~~~~~~~~~~~~~y~~~  144 (558)
                      .+++++++++++++..++.. .++++|.++|++|++|+|||||++++++||+||   ++|++|+++ ....+++++|+++
T Consensus        82 ~~i~~~v~~~~~~~~~~~~~-~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~gk~~~~~l~~~~~~-~~~~~~~~~~~~~  159 (918)
T PLN02305         82 IDVRAVITIRKKIKEKITEK-FEDQWEYFMNGIGQGILIQLVSEEIDPVTGSGKSVESSVRGWLPK-PSNDPHIVEYAAD  159 (918)
T ss_pred             CeEEEEEEEEeecccchhhc-ccchhhHHHHhhCCeEEEEEEeccccCCCCCcccccchhhccccC-CCCCCCceEEEEE
Confidence            67888888888776655553 257899999999999999999999999999665   899999986 3432667899999


Q ss_pred             EEecCCCCceeEEEEEecCCCceeeeeEEEeecCCCcEEEeeCCccccCCCCCCCeEEeeceecccCCCcHHHHHHHHHH
Q 008659          145 FEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPNGPVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEE  224 (558)
Q Consensus       145 f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~~~i~FpCnsWV~~~~~~~~~RifF~nkayLP~~tP~~L~~~Re~E  224 (558)
                      |+||++||+||||+|+|+|++||||++|+|+++|+|+|||+||||||++++|+.+||||+||+|||++||++|++|||+|
T Consensus       160 f~~~~~fG~pGA~~v~N~h~~ef~l~~i~l~~~p~g~v~f~cnSWv~~~~~~~~~RiFF~nk~ylP~~tP~~l~~~Re~e  239 (918)
T PLN02305        160 FTVPFDFGKPGAVLVTNLHGKEFYLMEIVIHGFDDGPIFFPANTWIHSRKDNPESRIIFRNQAYLPSQTPPGIKDLRRED  239 (918)
T ss_pred             EeeccccCCcceEEEEeCCCceEEEEEEEEecCCCCeEEEeccCccccCCCCCCCceEecCCCcCcccCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCCCCCCCCccccCCCCCCCCCCCcccccC---CCccCCC
Q 008659          225 LTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREG---NFYVPRD  301 (558)
Q Consensus       225 L~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~~~~dp~se~r~~---~~yvPrD  301 (558)
                      |++|||||+||||+||||||||||||||+||++++++||||||.+|||||||||||+|+++||.+|+|..   .+|||||
T Consensus       240 L~~lRGdg~Gerk~~dRiYdYd~YNDLG~Pd~~~~~~RpvLGG~~~PYPRR~RTGR~~t~~Dp~~Esr~~~~~~~YvPrD  319 (918)
T PLN02305        240 LLSLRGNGKGERKPHDRIYDYAPYNDLGNPDKDEDLARPVLGGEEWPYPRRCRTGRPPTKKDPLCESRIEKPHPVYVPRD  319 (918)
T ss_pred             HHHhcCCCCCcCCccccccchhhhccCCCCCCCccccCcccCCCCCCCCCcCcCCCCCCCCCCcccccccCCCCcCCCCC
Confidence            9999999999999999999999999999999999999999999669999999999999999999999954   4799999


Q ss_pred             CccChhhhccccccchHHHHHhhhhhhhhhccCCCCCCCCHHHHHHHhccCCCCCCcccccchhchh--hHHHHhhhccC
Q 008659          302 EAFSEVKQLTFSAKTVYSVLHALVPSLETAFVDPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLL--PRLVKAIEDTG  379 (558)
Q Consensus       302 e~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~~~~--~~i~~~~~~~~  379 (558)
                      |+|+++|+++|+++++||++|+++|.|+++++.+..+|++|+||++||++|++||......+.+..+  +.++++ .+++
T Consensus       320 E~f~~~K~~~f~~~~lk~~~~~~~p~~~~~~~~~~~~F~~f~~i~~Ly~~g~~l~~~~~~~~~~~p~~~~~~~~i-~~~~  398 (918)
T PLN02305        320 ETFEEIKRNTFSAGRLKALLHNLIPSIAAALSSSDIPFTCFSDIDKLYNDGILLKTEEPKDIGLNPFLGNFMKQV-LSVS  398 (918)
T ss_pred             CCcccchhhhHHHHHHHHHHHhhhhHHHHhcCCCCCCCCCHHHHHHHhccCCcCCchhhhhhhcCCchHHHHHHh-hhcc
Confidence            9999999999999999999999999999999888999999999999999999999731112222113  344555 7789


Q ss_pred             cccccccCccccccCcccccCcHHHHHhHhhCCCccceeecccCCCCCCCCCCccCCCCCCCcHHHHHhhcCCcccHHHH
Q 008659          380 DNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEA  459 (558)
Q Consensus       380 ~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~te~P~~s~ldp~~yG~~~S~IT~e~i~~~L~g~~tleea  459 (558)
                      +.+||||+|+||++|+++|++|+|||||||||+||++|++|++||++|+|||++||||+|+||+|||+.+|+| +||+||
T Consensus       399 ~~~lkf~~P~vi~~d~~~W~~DeeFaRQ~LaGvNP~~I~rl~efP~~skldp~~yG~~~s~iT~e~ve~~L~G-~TleeA  477 (918)
T PLN02305        399 ERLLKYDIPAVIKRDRFAWLRDNEFARQALAGVNPVNIEILKEFPILSKLDPAVYGPPESALTEELIERELEG-MTVEKA  477 (918)
T ss_pred             cccccCCCcceeecccccccChHHHHHHHHcCCCChheeeccccCCccccCccccCCcCCCcCHHHHHhhcCC-CcHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 999999


Q ss_pred             HhcCCEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCCCCCceEEeCCCCCCCChHHH
Q 008659          460 IKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWK  539 (558)
Q Consensus       460 l~~grLFi~DY~d~~lp~l~~in~~~g~~~YApr~Lffl~~dG~L~PIAIqL~~p~~~~~~~~~~VftPsd~~~~~~~W~  539 (558)
                      |++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||+++++++++.+++||||++++++.|.|+
T Consensus       478 l~~~rLFIlDy~dl~lp~l~~in~l~~~~~YAprtLffL~~dG~L~PlAIqL~~~p~~~~p~~~~VftP~~d~~~~w~W~  557 (918)
T PLN02305        478 IEEKRLFILDYHDMLLPFIEKMNSLPERKAYASRTVFFYSKAGALRPIAIELSLPPTPSSPGNKFVYTHGHDATTHWIWK  557 (918)
T ss_pred             HHcCCEEEEechhhhCcccccccccCCcccccceeEEEECCCCCEeeEEEEeeCCCCCCCCCcceeeCCCCCCCCchHHH
Confidence            99999999999999999999999999999999999999999999999999999998776667789999988778899999


Q ss_pred             HHHHHhhhccccceeeecC
Q 008659          540 LAKAHVLAHDAGYHQLVSH  558 (558)
Q Consensus       540 LAK~~v~~aD~~~HQlisH  558 (558)
                      ||||||++||++|||+|+|
T Consensus       558 LAK~~V~~aD~~~HQlisH  576 (918)
T PLN02305        558 LAKAHVCSNDAGVHQLVNH  576 (918)
T ss_pred             HHHHHHHhccHHHHHHHHH
Confidence            9999999999999999999

>PLN02264 lipoxygenase Back     alignment and domain information
>PLN02337 lipoxygenase Back     alignment and domain information
>PF00305 Lipoxygenase: Lipoxygenase; InterPro: IPR013819 Lipoxygenases (1 Back     alignment and domain information
>cd01751 PLAT_LH2 PLAT/ LH2 domain of plant lipoxygenase related proteins Back     alignment and domain information
>smart00308 LH2 Lipoxygenase homology 2 (beta barrel) domain Back     alignment and domain information
>PF01477 PLAT: PLAT/LH2 domain; InterPro: IPR001024 Lipoxygenases (1 Back     alignment and domain information
>cd00113 PLAT PLAT (Polycystin-1, Lipoxygenase, Alpha-Toxin) domain or LH2 (Lipoxygenase homology 2) domain Back     alignment and domain information
>cd02899 PLAT_SR Scavenger receptor protein Back     alignment and domain information
>cd01753 PLAT_LOX PLAT domain of 12/15-lipoxygenase Back     alignment and domain information
>cd01756 PLAT_repeat PLAT/LH2 domain repeats of family of proteins with unknown function Back     alignment and domain information
>cd01757 PLAT_RAB6IP1 PLAT/LH2 domain present in RAB6 interacting protein 1 (Rab6IP1)_like family Back     alignment and domain information
>cd01752 PLAT_polycystin PLAT/LH2 domain of polycystin-1 like proteins Back     alignment and domain information
>cd01754 PLAT_plant_stress PLAT/LH2 domain of plant-specific single domain protein family with unknown function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
2iuj_A 853 Crystal Structure Of Soybean Lipoxygenase-B Length 3e-98
1rov_A 857 Lipoxygenase-3 Treated With Cumene Hydroperoxide Le 7e-91
1ik3_A 857 Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydrope 8e-91
3pzw_A 839 Soybean Lipoxygenase-1 - Re-Refinement Length = 839 8e-90
1y4k_A 839 Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Leng 8e-90
3bnd_A 839 Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 8e-90
1fgm_A 839 Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Leng 8e-90
3bnc_A 839 Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 8e-90
2sbl_B 839 The Three-Dimensional Structure Of An Arachidonic A 9e-90
1fgr_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Leng 1e-89
3bne_A 839 Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 1e-89
1fgt_A 839 Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Leng 1e-89
3bnb_A 839 Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 1e-89
1fgq_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Leng 3e-89
1fgo_A 839 Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Leng 4e-89
2iuk_A 864 Crystal Structure Of Soybean Lipoxygenase-D Length 2e-88
3v98_A 691 S663d Stable-5-Lox Length = 691 2e-09
3v92_B 691 S663a Stable-5-Lox Length = 691 2e-09
3o8y_A 691 Stable-5-Lipoxygenase Length = 691 2e-09
3vf1_A 698 Structure Of A Calcium-Dependent 11r-Lipoxygenase S 6e-07
3dy5_A 1066 Allene Oxide Synthase 8r-Lipoxygenase From Plexaura 5e-04
3fg4_A 696 Crystal Structure Of Delta413-417:gs I805a Lox Leng 6e-04
3fg1_A 696 Crystal Structure Of Delta413-417:gs Lox Length = 6 6e-04
3fg3_A 696 Crystal Structure Of Delta413-417:gs I805w Lox Leng 6e-04
2fnq_A 699 Insights From The X-Ray Crystal Structure Of Coral 7e-04
>pdb|2IUJ|A Chain A, Crystal Structure Of Soybean Lipoxygenase-B Length = 853 Back     alignment and structure 
Iteration: 1

 Score =  355 bits (912), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 192/423 (45%), Positives = 262/423 (61%), Gaps = 9/423 (2%)
Query: 141 YESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNKQK 199
           Y+++F+  S FG  GA  ++N    E YLK ++L+ +PN G ++  CNSW+++    K  
Sbjct: 95  YDAQFDWDSDFGIPGAFYIKNYMQNEFYLKSLILEDIPNHGTIHFICNSWVYNSKHYKTD 154
Query: 200 RVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPE 259
           R+FF N  YLPS+TP  L +YR EEL  +RG+G GERK +DRIYDYDVYNDLGDPDK  +
Sbjct: 155 RIFFANNTYLPSETPAPLVKYREEELKNVRGDGTGERKEWDRIYDYDVYNDLGDPDKGEK 214
Query: 260 LARPVLGGKQNPYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYS 319
            ARPVLGG   PYPRR RTGR +   D  SEK     Y+PRDEAF  +K   F A  + S
Sbjct: 215 YARPVLGGSALPYPRRGRTGRGKTRKDPNSEKPGDFVYLPRDEAFGHLKSSDFLAYGIKS 274
Query: 320 VLHALVPSLETAFVDP--DLGFPYFSAIDALFNEGVNLPPLKQEGFWNTLLPRLVKAIED 377
           V   ++P L  AF      L F  F+ +  L+  GV LP         T +P + +    
Sbjct: 275 VAQDVLPVLTDAFDGNLLSLDFDNFAEVRKLYEGGVTLPTNFLSNI--TPIPIIKELFRT 332
Query: 378 TGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPP 437
            G+  L +  P+ M  DK  W  DEEF+R+T+AGLNP  I++I E+PL S LD + YG  
Sbjct: 333 DGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGLNPNVIKIIEEFPLSSKLDTQAYGDH 392
Query: 438 ESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFF 497
              IT E +E  +GG+ +VE+AI+ KKLFILD+HD  +PY+ K+    +T  Y +RTIFF
Sbjct: 393 TCIITKEHLEPNLGGL-TVEQAIQNKKLFILDHHDYLIPYLRKINA-NTTKTYATRTIFF 450
Query: 498 LTPAGTLRPIAIELTRPPMNGKPQW--KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQL 555
           L   GTL P+AIEL++P   G+      +V++PS    E ++W LAKA+V+ +DA YHQ+
Sbjct: 451 LKNDGTLTPLAIELSKPHPQGEEYGPVSEVYVPSSEGVEAYIWLLAKAYVVVNDACYHQI 510
Query: 556 VSH 558
           +SH
Sbjct: 511 ISH 513
>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide Length = 857 Back     alignment and structure
>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy- 9(Z),11(E)-Octadecadienoic Acid Length = 857 Back     alignment and structure
>pdb|3PZW|A Chain A, Soybean Lipoxygenase-1 - Re-Refinement Length = 839 Back     alignment and structure
>pdb|1Y4K|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694g Mutant Length = 839 Back     alignment and structure
>pdb|3BND|A Chain A, Lipoxygenase-1 (Soybean), I553v Mutant Length = 839 Back     alignment and structure
>pdb|1FGM|A Chain A, Lipoxygenase-1 (Soybean) At 100k, N694h Mutant Length = 839 Back     alignment and structure
>pdb|3BNC|A Chain A, Lipoxygenase-1 (Soybean) I553g Mutant Length = 839 Back     alignment and structure
>pdb|2SBL|B Chain B, The Three-Dimensional Structure Of An Arachidonic Acid 15- Lipoxygenase Length = 839 Back     alignment and structure
>pdb|1FGR|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697e Mutant Length = 839 Back     alignment and structure
>pdb|3BNE|A Chain A, Lipoxygenase-1 (Soybean) I553a Mutant Length = 839 Back     alignment and structure
>pdb|1FGT|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q697n Mutant Length = 839 Back     alignment and structure
>pdb|3BNB|A Chain A, Lipoxygenase-1 (Soybean) I553l Mutant Length = 839 Back     alignment and structure
>pdb|1FGQ|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495e Mutant Length = 839 Back     alignment and structure
>pdb|1FGO|A Chain A, Lipoxygenase-1 (Soybean) At 100k, Q495a Mutant Length = 839 Back     alignment and structure
>pdb|2IUK|A Chain A, Crystal Structure Of Soybean Lipoxygenase-D Length = 864 Back     alignment and structure
>pdb|3V98|A Chain A, S663d Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3V92|B Chain B, S663a Stable-5-Lox Length = 691 Back     alignment and structure
>pdb|3O8Y|A Chain A, Stable-5-Lipoxygenase Length = 691 Back     alignment and structure
>pdb|3VF1|A Chain A, Structure Of A Calcium-Dependent 11r-Lipoxygenase Suggests A Mechanism For Ca-Regulation Length = 698 Back     alignment and structure
>pdb|3DY5|A Chain A, Allene Oxide Synthase 8r-Lipoxygenase From Plexaura Homomalla Length = 1066 Back     alignment and structure
>pdb|3FG4|A Chain A, Crystal Structure Of Delta413-417:gs I805a Lox Length = 696 Back     alignment and structure
>pdb|3FG1|A Chain A, Crystal Structure Of Delta413-417:gs Lox Length = 696 Back     alignment and structure
>pdb|3FG3|A Chain A, Crystal Structure Of Delta413-417:gs I805w Lox Length = 696 Back     alignment and structure
>pdb|2FNQ|A Chain A, Insights From The X-Ray Crystal Structure Of Coral 8r- Lipoxygenase: Calcium Activation Via A C2-Like Domain And A Structural Basis Of Product Chirality Length = 699 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 0.0
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 1e-178
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 1e-171
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 1e-50
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 4e-49
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 4e-47
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 2e-45
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 2e-43
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 2e-39
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 6e-36
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-13
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Length = 839 Back     alignment and structure
 Score =  543 bits (1399), Expect = 0.0
 Identities = 196/503 (38%), Positives = 273/503 (54%), Gaps = 17/503 (3%)

Query: 66  KSIKVKAVVTVKPTVGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDKSTIQ 125
              K+K  V + P     ++       +D+L    G+S+ L+L+SA      G  K    
Sbjct: 4   AGHKIKGTVVLMPKNELEVNPDG--SAVDNLNAFLGRSVSLQLISATKADAHGKGKVGKD 61

Query: 126 DYARK----IGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-G 180
            +       +   G G   +   FE     G  GA  ++N    E +LK + L+ + N G
Sbjct: 62  TFLEGINTSLPTLGAGESAFNIHFEWDGSMGIPGAFYIKNYMQVEFFLKSLTLEAISNQG 121

Query: 181 PVNVTCNSWLHSKHDNKQKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYD 240
            +   CNSW+++    K  R+FF N  Y+PS+TP  L  YR EEL  LRGNG GERK YD
Sbjct: 122 TIRFVCNSWVYNTKLYKSVRIFFANHTYVPSETPAPLVSYREEELKSLRGNGTGERKEYD 181

Query: 241 RIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQFSEKREGNFYVP 299
           RIYDYDVYNDLG+PDK  +LARPVLGG    PYPRR RTGR    TD  +EK+   FYVP
Sbjct: 182 RIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDPNTEKQGEVFYVP 241

Query: 300 RDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFSAIDALFNEGVNLPP 357
           RDE    +K          S+   + P+ E+AF      + F  F  +  L+  G+ LP 
Sbjct: 242 RDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLP- 300

Query: 358 LKQEGFWNTLLPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSI 417
            +        LP + +     G +IL F  P  +   +  W  DEEF+R+ +AG+NP  I
Sbjct: 301 -RDVISTIIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVI 359

Query: 418 RLITEWPLKSTLDPEIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPY 477
           R + E+P KS LDP IYG   S IT + ++ +     +++EA+  ++LF+LDYHD+F+PY
Sbjct: 360 RGLEEFPPKSNLDPAIYGDQSSKITADSLDLD---GYTMDEALGSRRLFMLDYHDIFMPY 416

Query: 478 VEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNG--KPQWKQVFLPSWHSTEC 535
           V ++ QL S   Y +RTI FL   GTL+P+AIEL+ P   G       QV LP+    E 
Sbjct: 417 VRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAVSQVVLPAKEGVES 476

Query: 536 WLWKLAKAHVLAHDAGYHQLVSH 558
            +W LAKA+V+ +D+ YHQL+SH
Sbjct: 477 TIWLLAKAYVIVNDSCYHQLMSH 499
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Length = 864 Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Length = 853 Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Length = 573 Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Length = 1066 Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Length = 691 Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Length = 696 Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Length = 541 Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Length = 698 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
2iuk_A 864 SEED lipoxygenase; iron, dioxygenase, metal-bindin 100.0
1f8n_A 839 Lipoxygenase-1; dioxygenase, metalloprotein, fatty 100.0
2iuj_A 853 Lipoxygenase L-5; dioxygenase, metal-binding, oxid 100.0
1lox_A 662 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot 100.0
3v98_A 691 Arachidonate 5-lipoxygenase; dioxygenase, oxidored 100.0
3fg1_A 696 Allene oxide synthase-lipoxygenase protein; arichi 100.0
3vf1_A 698 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-lik 100.0
3dy5_A 1066 Allene oxide synthase-lipoxygenase protein; fusion 100.0
3rde_A 573 Arachidonate 12-lipoxygenase, 12S-type; C-terminal 100.0
3d3l_A 541 Arachidonate 12-lipoxygenase, 12S-type; ALOX12, ir 100.0
2wxu_A370 Phospholipase C; cytolysis, hydrolase, hemolysis, 98.16
1olp_A370 Alpha-toxin; zinc phospholipase C, GAS gangrene de 98.11
3cwz_B384 RAB6IP1, RAB6-interacting protein 1; RAB small GTP 96.03
>2iuk_A SEED lipoxygenase; iron, dioxygenase, metal-binding, oxidoreductase, oxylipin biosynthesis, soybean lipoxygenase-D, fatty acid biosynthesis; 2.4A {Glycine max} Back     alignment and structure
Probab=100.00  E-value=2.8e-147  Score=1239.60  Aligned_cols=496  Identities=39%  Similarity=0.707  Sum_probs=449.4

Q ss_pred             CCcceeeeEEeeeee-eEEeEEEEeecc---------ccCcccccccccccchhhhccCCcEEEEEEeeecCCCCCCcc-
Q 008659           53 PRNTIKAIATSTEKS-IKVKAVVTVKPT---------VGGFLSNISLDQGLDDLGDLFGKSLLLELVSAELDPKTGLDK-  121 (558)
Q Consensus        53 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~~~~~d~~~~~~g~~v~lqLvS~~~~~~~g~~~-  121 (558)
                      .+++++|+|++|+++ +++++..++.+.         ++...+.  +++.+|.+.|++|++|+|||||+++||+||+|| 
T Consensus         7 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~~~~~g~~v~lqlvs~~~~~~~~~~k~   84 (864)
T 2iuk_A            7 KGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSL--VGGVIDTATSFLGRNISMQLISATQTDGSGNGKV   84 (864)
T ss_dssp             -CCCEEEEEEEEEGGGSCHHHHTTC-------------------------CCSGGGSCSTTEEEEEEEEEEECSSSCEEE
T ss_pred             CCCEEEEEEEEEeccccccccccccccccccccccccccccccc--ccchhhhHHHhccCeEEEEEEecccCCCCCCCcC
Confidence            556899999999887 676654422211         1111111  257899999999999999999999999999885 


Q ss_pred             ---eeccccccccCCCCCCceEEEEEEEecCCCCceeEEEEEecCCCceeeeeEEEeecCC-CcEEEeeCCccccCCCCC
Q 008659          122 ---STIQDYARKIGADGDGNMQYESEFEVPSGFGEIGAILVENEHHKEMYLKDIVLDGLPN-GPVNVTCNSWLHSKHDNK  197 (558)
Q Consensus       122 ---~~l~~~~~~~~~~~~~~~~y~~~f~~~~dfG~pgav~v~n~h~~e~fl~~i~l~~~p~-~~i~FpCnsWV~~~~~~~  197 (558)
                         +.|++|+.+.....+++++|+++|.||++||+||||+|+|+|++||||++|+|+++|+ |+|||+||||||++++|+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~fg~pgA~~v~n~~~~e~~l~~~~l~~~~~~~~~~f~cnswv~~~~~~~  164 (864)
T 2iuk_A           85 GKEVYLEKHLPTLPTLGARQDAFSIFFEWDASFGIPGAFYIKNFMTDEFFLVSVKLEDIPNHGTIEFVCNSWVYNFRSYK  164 (864)
T ss_dssp             EEEEECCEEECSCSSCCTTCEEEEEEECCCSTTCCEEEEEEEECSSSCEEEEEEEEECCSSSCCEEEEEEEEECBGGGSS
T ss_pred             CCcccccccccCCCcCCCCcEEEEEEEEeeccCCCcceEEEEeCCCCceEEEEEEEecCCCCCcEEEecCccccCCCCCC
Confidence               9999999554446778899999999999999999999999999999999999999996 999999999999999999


Q ss_pred             CCeEEeeceecccCCCcHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCC-CCCCCCccc
Q 008659          198 QKRVFFTNKLYLPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRC  276 (558)
Q Consensus       198 ~~RifF~nkayLP~~tP~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG-~~~PYPRR~  276 (558)
                      .+||||+||+|||++||++|+++||+||++|||||+||||+||||||||||||||+||++++  |||||| ++|||||||
T Consensus       165 ~~RifF~n~~ylp~~tp~~l~~~R~~el~~lrg~g~g~rk~~driydyd~yndlg~pd~~~~--rpvlggs~~~pyPrR~  242 (864)
T 2iuk_A          165 KNRIFFVNDTYLPSATPAPLLKYRKEEFEVLRGDGTGKRKDFDRIYDYDVYNDLGNPDGGDP--RPILGGCSIYPYPLRV  242 (864)
T ss_dssp             SCEEEEBSCCCCTTTSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCCSCBGGGTBC--CCCBSSSSSSCCCCEE
T ss_pred             CCceeccCCCcCcccCcHHHHHHHHHHHHHhcCCCCCcccccccchhhhhhhcCCCcccCCC--CcccCCCCCCCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999987  999999 999999999


Q ss_pred             cCCCCCCCCCCCcccccCCCccCCCCccChhhhccccccchHHHHHhhhhhhhhhcc--C-CCCCCCCHHHHHHHhccCC
Q 008659          277 RTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--D-PDLGFPYFSAIDALFNEGV  353 (558)
Q Consensus       277 RTGR~~~~~dp~se~r~~~~yvPrDe~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~--~-~~~~f~sf~di~~Ly~~g~  353 (558)
                      ||||+|+++||.+|+|.+ +||||||+|+++|+++|.++++++++|.++|+|++++.  + +..+|++|+||++||++|+
T Consensus       243 rtgr~~~~~dp~~e~~~~-~yvPrDe~F~~~K~~~f~~~~~k~~~~~~~p~l~~~~~~~~~~~~~f~sf~di~~ly~~g~  321 (864)
T 2iuk_A          243 RTGRERTRTDPNSEKPGE-VYVPRDENFGHLKSSDFLTYGIKSLSHDVIPLFKSAIFQLRVTSSEFESFEDVRSLYEGGI  321 (864)
T ss_dssp             CCCCCBCSSCTTSBCCCC-CCCCGGGSCCCSSGGGCHHHHHHHHHHTTHHHHHHHHHSSCSSCSSCCSHHHHHTTTSSCE
T ss_pred             cCCCCCCCCCCCcccccc-CCCCCCcccCcchHHHHHHHHHHHHHHHHHHHHHHHhcccccCcCCCCCHHHHHHHHhccc
Confidence            999999999999999965 99999999999999999999999999999999999884  3 6789999999999999999


Q ss_pred             CCCCcccccchhch--hhHHHHhhhccCcccccccCccccccCcccccCcHHHHHhHhhCCCccceeecccCCCCCCCCC
Q 008659          354 NLPPLKQEGFWNTL--LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDP  431 (558)
Q Consensus       354 ~l~~~~~~~~~~~~--~~~i~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~te~P~~s~ldp  431 (558)
                      ++|.   . ..+.+  ++.+++++.+++++++|||+|+||++|+++|++|+|||||+|||+||++|++|++||++|+|||
T Consensus       322 ~l~~---~-~~~~~~p~~~~~~~~~~~~e~~lk~p~P~vi~~~~~~W~~DeeFarQ~LaG~NP~~I~r~~e~P~~s~ldp  397 (864)
T 2iuk_A          322 KLPT---D-ILSQISPLPALKEIFRTDGENVLQFPPPHVAKVSKSGVMTDEEFAREVIAGVNPNVIRRLQEFPPKSTLDP  397 (864)
T ss_dssp             ECCH---H-HHHHHSSCTTTTTTCBCTTSSEEBCCCCSSCSCSSSSSSCHHHHHHHHHHSSSCSCCEECSSSSCCCCSCH
T ss_pred             cCch---h-hhcccCcHHHHHHHhhccccchhcCCCcceecccchhhhchHHHHHHHhcCCCchhhhhhhccCCcccCCh
Confidence            9886   2 22332  3466777778889999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCCCcHHHHHhhcCCcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEe
Q 008659          432 EIYGPPESAITTELIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIEL  511 (558)
Q Consensus       432 ~~yG~~~S~IT~e~i~~~L~g~~tleeal~~grLFi~DY~d~~lp~l~~in~~~g~~~YApr~Lffl~~dG~L~PIAIqL  511 (558)
                      ++||+++|+||++||+..|+| +||+|||++|||||+||||++|||+.++|.++++++|||+||||++++|+|+||||||
T Consensus       398 ~~yg~~~s~it~e~i~~~l~g-~tl~eal~~grLFi~Dy~d~~lp~l~~in~~~~~~~YAp~~Lffl~~dG~L~PlAIqL  476 (864)
T 2iuk_A          398 TLYGDQTSTITKEQLEINMGG-VTVEEALSTQRLFILDYQDAFIPYLTRINSLPTAKAYATRTILFLKDDGTLKPLAIEL  476 (864)
T ss_dssp             HHHCCCCCCCCHHHHGGGTTT-CCHHHHHHTTCEEEEECHHHHGGGHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEE
T ss_pred             hhcCCcccccCHHHHhhccCC-CcHHHHHhcCCEEEecchhhhccchhhcccCCCceeecceEEEEEcCCCCEeEEEEEe
Confidence            999999999999999999998 9999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCC--CCCceEEeCCCCCCCChHHHHHHHHhhhccccceeeecC
Q 008659          512 TRPPMNGK--PQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH  558 (558)
Q Consensus       512 ~~p~~~~~--~~~~~VftPsd~~~~~~~W~LAK~~v~~aD~~~HQlisH  558 (558)
                      ++|+++++  +++++||||+|+++++|.|+||||||++||++|||+|+|
T Consensus       477 s~p~~~~~~~~~~~~VftP~dd~~~~~~W~LAK~~v~~aD~~~HqlisH  525 (864)
T 2iuk_A          477 SKPHPDGDNLGPESIVVLPATEGVDSTIWLLAKAHVIVNDSGYHQLVSH  525 (864)
T ss_dssp             EECCSSSSSSCCEEEEECCCSSSSHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             eCCCCCccccCCCCCeECCCCCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence            99876544  367999999988777899999999999999999999999
>1f8n_A Lipoxygenase-1; dioxygenase, metalloprotein, fatty acids, oxidoreductase; 1.40A {Glycine max} SCOP: a.119.1.1 b.12.1.1 PDB: 1yge_A 2sbl_B 3pzw_A 1fgq_A 1fgr_A 3bnd_A 1fgt_A 1fgm_A 3bnb_A 1fgo_A 1y4k_A 3bne_A 3bnc_A 1ik3_A* 1hu9_A* 1jnq_A* 1lnh_A 1n8q_A* 1no3_A* 1rrh_A ... Back     alignment and structure
>2iuj_A Lipoxygenase L-5; dioxygenase, metal-binding, oxidoreductase, soybean lipoxygenase-B, fatty acid biosynthesis, lipid synthesis; 2.4A {Glycine max} Back     alignment and structure
>1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Back     alignment and structure
>3v98_A Arachidonate 5-lipoxygenase; dioxygenase, oxidoreductase; 2.07A {Homo sapiens} PDB: 3v99_A* 3o8y_A 3v92_B Back     alignment and structure
>3fg1_A Allene oxide synthase-lipoxygenase protein; arichidonic metabolism, dioxygenase, fatty ACI biosynthesis, heme, iron, lipid synthesis, lyase; HET: GOL; 1.85A {Plexaura homomalla} PDB: 3fg4_A* 3fg3_A* 2fnq_A Back     alignment and structure
>3vf1_A 11R-lipoxygenase; LOX, PLAT, beta sandwich, C2-like domain, non-heme iron, conformational change, dioxygenase, oxidoreductase; HET: SUC; 2.47A {Gersemia fruticosa} Back     alignment and structure
>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein, BI-functional enzyme, dioxygenase, fatty ACI biosynthesis, heme, iron; HET: HEM; 3.51A {Plexaura homomalla} Back     alignment and structure
>3rde_A Arachidonate 12-lipoxygenase, 12S-type; C-terminal domain, protein-inhibitor complex, oxapentadeca-4-YNE)phenylpropanoic acid; HET: OYP; 1.89A {Sus scrofa} Back     alignment and structure
>3d3l_A Arachidonate 12-lipoxygenase, 12S-type; ALOX12, iron-binding protein, 12-LOX, platelet-type lipoxygenase 12, structural genomics; 2.60A {Homo sapiens} Back     alignment and structure
>2wxu_A Phospholipase C; cytolysis, hydrolase, hemolysis, membrane binding, virulence gangrene determinant, C2 domain; 1.80A {Clostridium perfringens} PDB: 2wy6_A 2wxt_A 1qm6_A 1qmd_A 1ca1_A 1gyg_A 1kho_A Back     alignment and structure
>1olp_A Alpha-toxin; zinc phospholipase C, GAS gangrene determinant, membrane binding, calcium binding, hydrolase; 2.5A {Clostridium absonum} SCOP: a.124.1.1 b.12.1.3 Back     alignment and structure
>3cwz_B RAB6IP1, RAB6-interacting protein 1; RAB small GTPase, RAB-binding domain, guanosine 5' triphosphate, RUN, RPIP8, UNC-14, nesca PLAT; HET: GTP; 3.20A {Mus musculus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 558
d3bnea1 690 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal dom 1e-162
d2p0ma1 551 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Ory 2e-48
d3bnea2143 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Gl 6e-46
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 690 Back     information, alignment and structure

class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

 Score =  475 bits (1224), Expect = e-162
 Identities = 158/356 (44%), Positives = 213/356 (59%), Gaps = 12/356 (3%)

Query: 209 LPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGGK 268
           +PS+TP  L  YR EEL  LRGNG GERK YDRIYDYDVYNDLG+PDK  +LARPVLGG 
Sbjct: 1   VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGS 60

Query: 269 QN-PYPRRCRTGRPRCDTDQFSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPS 327
              PYPRR RTGR    TD  +EK+   FYVPRDE    +K          S+   + P+
Sbjct: 61  STFPYPRRGRTGRGPTVTDPNTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPA 120

Query: 328 LETAFV--DPDLGFPYFSAIDALFNEGVNLPPLKQEGFWNTL-LPRLVKAIEDTGDNILL 384
            E+AF      + F  F  +  L+  G+ LP   ++     + LP + +     G +IL 
Sbjct: 121 FESAFDLKSTPIEFHSFQDVHDLYEGGIKLP---RDVISTIIPLPVIKELYRTDGQHILK 177

Query: 385 FETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTE 444
           F  P  +   +  W  DEEF+R+ +AG+NP  IR + E+P KS LDP IYG   S IT +
Sbjct: 178 FPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITAD 237

Query: 445 LIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTL 504
            ++ +     +++EA+  ++LF+LDYHD+F+PYV ++ QL S   Y +RTI FL   GTL
Sbjct: 238 SLDLD---GYTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTL 294

Query: 505 RPIAIELTRPPMNG--KPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH 558
           +P+AIEL+ P   G       QV LP+    E  +W LAKA+V+ +D+ YHQL+SH
Sbjct: 295 KPVAIELSLPHSAGDLSAAVSQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSH 350
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 551 Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Length = 143 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
d3bnea1 690 Lipoxigenase, C-terminal domain {Soybean (Glycine 100.0
d2p0ma1 551 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 100.0
d3bnea2143 Plant lipoxigenase {Soybean (Glycine max), isozyme 100.0
d2p0ma2111 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [T 97.74
d1olpa2121 Alpha-toxin, C-terminal domain {Clostridium absonu 97.33
d1ca1a2121 Alpha-toxin, C-terminal domain {Clostridium perfri 96.46
d1rp1a1113 Pancreatic lipase, C-terminal domain {Dog (Canis f 91.94
d1bu8a1114 Pancreatic lipase, C-terminal domain {Rat (Rattus 91.63
d1gpla1112 Pancreatic lipase, C-terminal domain {Guinea pig ( 84.52
>d3bnea1 a.119.1.1 (A:150-839) Lipoxigenase, C-terminal domain {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
class: All alpha proteins
fold: Lipoxigenase
superfamily: Lipoxigenase
family: Plant lipoxigenases
domain: Lipoxigenase, C-terminal domain
species: Soybean (Glycine max), isozyme L1 [TaxId: 3847]

Probab=100.00  E-value=1.9e-110  Score=927.00  Aligned_cols=344  Identities=46%  Similarity=0.803  Sum_probs=325.6

Q ss_pred             ccCCCcHHHHHHHHHHHHhhhCCCCCcccccCeeEeecccCCCCCCCCCCCcccccCCC-CCCCCCccccCCCCCCCCCC
Q 008659          209 LPSQTPDGLKRYRAEELTILRGNGQGERKTYDRIYDYDVYNDLGDPDKKPELARPVLGG-KQNPYPRRCRTGRPRCDTDQ  287 (558)
Q Consensus       209 LP~~tP~~L~~~Re~EL~~lRG~g~gerk~~dRiYdydvYnDLG~Pd~~~~~~RpvLGG-~~~PYPRR~RTGR~~~~~dp  287 (558)
                      ||++||++|++|||+||++|||||+||||+||||||||||||||+||++++++|||||| ++|||||||||||+|+++||
T Consensus         1 lp~~tp~~l~~~r~~el~~lrg~g~g~~~~~driydy~~yndlg~pd~~~~~~rp~lgg~~~~pyprr~rtgr~~~~~dp   80 (690)
T d3bnea1           1 VPSETPAPLVEYREEELKSLRGNGTGERKEYDRIYDYDVYNDLGNPDKSEKLARPVLGGSSTFPYPRRGRTGRGPTVTDP   80 (690)
T ss_dssp             CGGGSCGGGHHHHHHHHHHHHCCSCSCCCTTCCCCCEECBCSSCCTTTCGGGCCCCBSSSSSSCCCCEECCCCCBCSSCT
T ss_pred             CCccccHHHHHHHHHHHHHhCCCCCCCCCcccccccccccccCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence            79999999999999999999999999999999999999999999999999999999999 78999999999999999999


Q ss_pred             CcccccCCCccCCCCccChhhhccccccchHHHHHhhhhhhhhhcc--CCCCCCCCHHHHHHHhccCCCCCCcccccchh
Q 008659          288 FSEKREGNFYVPRDEAFSEVKQLTFSAKTVYSVLHALVPSLETAFV--DPDLGFPYFSAIDALFNEGVNLPPLKQEGFWN  365 (558)
Q Consensus       288 ~se~r~~~~yvPrDe~Fs~~K~~~F~~~~lk~~~~~~lp~l~~~~~--~~~~~f~sf~di~~Ly~~g~~l~~~~~~~~~~  365 (558)
                      .+|+|...+||||||+|+++|++||.++++++++|+++|.|+++++  .+..+|+||+||++||++|+++|..   .+.+
T Consensus        81 ~~e~r~~~~yvPrde~f~~~k~~~f~~~~~~~~~~~~~p~~~~~~~~~~~~~~f~~f~~i~~ly~~g~~~~~~---~~~~  157 (690)
T d3bnea1          81 NTEKQGEVFYVPRDENLGHLKSKDALEIGTKSLSQIVQPAFESAFDLKSTPIEFHSFQDVHDLYEGGIKLPRD---VIST  157 (690)
T ss_dssp             TSBCCCSSCCCCGGGSCCCSSGGGCHHHHHHHHHHTHHHHHHHHHHTTSSCSSCCSHHHHHGGGTTCEECCHH---HHHH
T ss_pred             CcccCCCCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCHHHHHHHHhccccCchh---hhhh
Confidence            9999999999999999999999999999999999999999999864  4678999999999999999998852   2223


Q ss_pred             ch-hhHHHHhhhccCcccccccCccccccCcccccCcHHHHHhHhhCCCccceeecccCCCCCCCCCCccCCCCCCCcHH
Q 008659          366 TL-LPRLVKAIEDTGDNILLFETPETMDRDKFFWFRDEEFSRQTLAGLNPYSIRLITEWPLKSTLDPEIYGPPESAITTE  444 (558)
Q Consensus       366 ~~-~~~i~~~~~~~~~~~lkfp~P~vi~~d~~~W~~DeeFarQ~LaG~NP~~I~r~te~P~~s~ldp~~yG~~~S~IT~e  444 (558)
                      .+ ++.+++++.++++.++|||+|+||++|+++|++|+|||||+|||+||++|+||++||++|+|||++||+++|+||++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~f~~P~~~~~~~~~W~~D~eFarQ~LaG~NP~~Irr~~e~P~~~~l~~~~~g~~~s~it~~  237 (690)
T d3bnea1         158 IIPLPVIKELYRTDGQHILKFPQPHVVQVSQSAWMTDEEFAREMIAGVNPCVIRGLEEFPPKSNLDPAIYGDQSSKITAD  237 (690)
T ss_dssp             HTTSTTGGGGCEECSSSEEECCCCGGGSSCSSGGGSHHHHHHHHHHSSSTTCCEECCSSSCCCCSCHHHHCCCCCCCCGG
T ss_pred             cccHHHHHHHhhccccceeecCCchhhhccccccccHHHHHHHHhcCCCchheeeccccCCcCCCCHHHhCchhhhhhHh
Confidence            23 66789999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhhcCCcccHHHHHhcCCEEEEcCCccccchhhhcccCCCceeeeeeeEEEeCCCCceeeEEEEecCCCCCCC--CCC
Q 008659          445 LIEKEIGGMISVEEAIKQKKLFILDYHDLFLPYVEKVRQLKSTTLYGSRTIFFLTPAGTLRPIAIELTRPPMNGK--PQW  522 (558)
Q Consensus       445 ~i~~~L~g~~tleeal~~grLFi~DY~d~~lp~l~~in~~~g~~~YApr~Lffl~~dG~L~PIAIqL~~p~~~~~--~~~  522 (558)
                      +++  ++| +||+|||++|||||+||||+++|++.++|...+++.|||+||||++++|+|+||||||+++++.++  +++
T Consensus       238 ~i~--l~G-~Tl~~Al~~grLFi~Dy~dl~~~~~~~i~~~~~~~~~A~~~Lffl~~dG~L~PiAIqL~~~~~~~~~~~~~  314 (690)
T d3bnea1         238 SLD--LDG-YTMDEALGSRRLFMLDYHDIFMPYVRQINQLNSAKTYATRTILFLREDGTLKPVAIELSLPHSAGDLSAAV  314 (690)
T ss_dssp             GCC--CTT-CCHHHHHHTTCEEEEECHHHHHHHHHHHHTSTTCCCCEEEEEEEECTTSCEEEEEEEEECCCCTTCCCCCC
T ss_pred             hhc--cCc-cHHHHHHHcCCEEEEechhhhccccccccCcCCceeecchhheeECCCCCcccEEEEecCCCCCcccCCCC
Confidence            985  778 999999999999999999999999999999999999999999999999999999999999986543  678


Q ss_pred             ceEEeCCCCCCCChHHHHHHHHhhhccccceeeecC
Q 008659          523 KQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSH  558 (558)
Q Consensus       523 ~~VftPsd~~~~~~~W~LAK~~v~~aD~~~HQlisH  558 (558)
                      ++||||+|++++.|.|+||||||++||++|||+|+|
T Consensus       315 ~~VftP~d~~~~~~~W~lAK~~v~~aD~~~HqlvsH  350 (690)
T d3bnea1         315 SQVVLPAKEGVESTIWLLAKAYVIVNDSCYHQLMSH  350 (690)
T ss_dssp             CEEECCCSSHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             CceeCCCCCCccchHHHHHHHHHHHhhHHHHHHHHh
Confidence            999999997766899999999999999999999999
>d2p0ma1 a.119.1.2 (A:113-663) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d3bnea2 b.12.1.1 (A:7-149) Plant lipoxigenase {Soybean (Glycine max), isozyme L1 [TaxId: 3847]} Back     information, alignment and structure
>d2p0ma2 b.12.1.1 (A:2-112) 15-Lipoxygenase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1olpa2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium absonum [TaxId: 29369]} Back     information, alignment and structure
>d1ca1a2 b.12.1.3 (A:250-370) Alpha-toxin, C-terminal domain {Clostridium perfringens, different strains [TaxId: 1502]} Back     information, alignment and structure
>d1rp1a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Dog (Canis familiaris) [TaxId: 9615]} Back     information, alignment and structure
>d1bu8a1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1gpla1 b.12.1.2 (A:337-449) Pancreatic lipase, C-terminal domain {Guinea pig (Cavia porcellus) [TaxId: 10141]} Back     information, alignment and structure