Citrus Sinensis ID: 008660

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
cHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccEEEEEcccccEEHHHHHHHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHccccccEEcccHHHHHccccEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcEEEEEEHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccccccccEEEEccccccEEEEEEEcEEEEEEEccEEEEEEcccccEEcccHHHHHccccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccc
ccHHHHHHHHHHEEEEccHHHHHHHHHHHHHHHHHHHHHHccHEEEEEEccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccHEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHcccccccccccHHccccccccccccccccEEEHcHccccccccccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEEcEEEEEccccEEEEEEcccccccHHHHHHHHHcccccccccccccHEEEEEHEHHHHEccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcc
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILdpfffyipdlkdeikcihcndtlgITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNfkggrevleDPMVRMWMLFFIDglailpipqvlvifpirdtgfstAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCwreasenhtgrshsYVFCNkcfgdykllndscpistgnttrynfGIYKDALqsgivretyfpkKLLRCLHWGLQKLSAfgqdletsddvGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIdslvsdlpddtakQVKLHFGRNLLGqmqkfenwedysldhlcgclkpvffserttiisEGESIHEMLFVLEGQISIYSKSKLIglkrqedgnycgeEIIDWaenqssshghlpistrTIIAhtnvegftlktdELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASEnhtgrshsYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQklrqikhwkhfkdISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQmkrrqsrshe
MLVACLLiiiiiiiVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
*LVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHIS***************FKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQ**SHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFK*************
***ACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQ**********TRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMK*RQ*****
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELRE**********FKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFK*************
MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKEN****************GGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSH*
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SSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLVACLLIIIIIIIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPIRDTGFSTAMTFFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGDYKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQMQMKRRQSRSHE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query558 2.2.26 [Sep-21-2011]
O65717716 Cyclic nucleotide-gated i yes no 0.885 0.689 0.363 3e-88
Q9LD40696 Putative cyclic nucleotid no no 0.892 0.715 0.336 1e-81
Q9SKD7706 Probable cyclic nucleotid no no 0.876 0.692 0.359 6e-81
Q9LNJ0711 Probable cyclic nucleotid no no 0.899 0.706 0.324 2e-80
O82226747 Probable cyclic nucleotid no no 0.879 0.657 0.330 2e-78
Q9M0A4733 Putative cyclic nucleotid no no 0.879 0.669 0.333 4e-78
Q8RWS9717 Probable cyclic nucleotid no no 0.874 0.680 0.329 2e-74
Q9S9N5738 Putative cyclic nucleotid no no 0.890 0.673 0.296 1e-69
Q9FXH6753 Putative cyclic nucleotid no no 0.890 0.660 0.289 8e-69
Q8GWD2649 Probable cyclic nucleotid no no 0.903 0.776 0.3 2e-64
>sp|O65717|CNGC1_ARATH Cyclic nucleotide-gated ion channel 1 OS=Arabidopsis thaliana GN=CNGC1 PE=1 SV=1 Back     alignment and function desciption
 Score =  326 bits (835), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 189/520 (36%), Positives = 296/520 (56%), Gaps = 26/520 (5%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITA+V+RS  D   +LHI  + 
Sbjct: 96  NKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQF 155

Query: 87  READKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQVLVIFPI 146
           R      + R   + +  + K     RE+ +  +      F ID LA+LP+PQ++++  I
Sbjct: 156 RTGFIAPSSRVFGRGVLVEDK-----REIAKRYLSSH---FIIDILAVLPLPQMVILIII 207

Query: 147 RDTGFSTAMT------FFVL-QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYL 199
                S+++       F V  QY+ R IR Y L+ +    SG++ +  W   AF + LY+
Sbjct: 208 PHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYM 267

Query: 200 QSGHMFGALWYYYAIEKATDCWREASE-NHTGRSHSYVFCN-KCFGDYKLLNDSCPISTG 257
            + H+FGA WY ++IE+ T CW++A E N+       ++C+ +  G    LN+SCPI T 
Sbjct: 268 LASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTP 327

Query: 258 NTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIW 317
           NTT ++FGI+ DALQSG+V    FP+K   C  WGLQ LS+ GQ+L+TS  + E  FA++
Sbjct: 328 NTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVF 387

Query: 318 MTIYGVVLFVFLIGRM----QSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRE 373
           ++I G+VLF FLIG M    QS TTR  ++  K R  + W   + +   +R +IR  ++ 
Sbjct: 388 ISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQY 447

Query: 374 NLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFF 433
                  +  ++L+S+LP D  + +K H    LL ++  FE  ++  LD LC  L+PV +
Sbjct: 448 KWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLY 507

Query: 434 SERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIIDWAENQS 489
           +E + I+ EG+ + EMLF++ G+ ++I +     G    E    G++CGEE++ WA +  
Sbjct: 508 TEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPH 567

Query: 490 SSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 529
           SS  +LPISTRT+ A   VE F LK D+LK   +  RR +
Sbjct: 568 SS-SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLH 606
Acts as cyclic nucleotide-gated ion channel. Can be activated by cyclic AMP which leads to an opening of the cation channel. May be responsible for cAMP-induced calcium entry in cells and thus should be involved in the calcium signal transduction. Could transport K(+), Na(+) and Pb(2+).
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LD40|CNG13_ARATH Putative cyclic nucleotide-gated ion channel 13 OS=Arabidopsis thaliana GN=CNGC13 PE=3 SV=2 Back     alignment and function description
>sp|Q9SKD7|CNGC3_ARATH Probable cyclic nucleotide-gated ion channel 3 OS=Arabidopsis thaliana GN=CNGC3 PE=2 SV=2 Back     alignment and function description
>sp|Q9LNJ0|CNG10_ARATH Probable cyclic nucleotide-gated ion channel 10 OS=Arabidopsis thaliana GN=CNGC10 PE=2 SV=2 Back     alignment and function description
>sp|O82226|CNGC6_ARATH Probable cyclic nucleotide-gated ion channel 6 OS=Arabidopsis thaliana GN=CNGC6 PE=1 SV=2 Back     alignment and function description
>sp|Q9M0A4|CNGC9_ARATH Putative cyclic nucleotide-gated ion channel 9 OS=Arabidopsis thaliana GN=CNGC9 PE=1 SV=1 Back     alignment and function description
>sp|Q8RWS9|CNGC5_ARATH Probable cyclic nucleotide-gated ion channel 5 OS=Arabidopsis thaliana GN=CNGC5 PE=2 SV=1 Back     alignment and function description
>sp|Q9S9N5|CNGC7_ARATH Putative cyclic nucleotide-gated ion channel 7 OS=Arabidopsis thaliana GN=CNGC7 PE=2 SV=1 Back     alignment and function description
>sp|Q9FXH6|CNGC8_ARATH Putative cyclic nucleotide-gated ion channel 8 OS=Arabidopsis thaliana GN=CNGC8 PE=3 SV=2 Back     alignment and function description
>sp|Q8GWD2|CNG12_ARATH Probable cyclic nucleotide-gated ion channel 12 OS=Arabidopsis thaliana GN=CNGC12 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
224118210 709 predicted protein [Populus trichocarpa] 0.917 0.722 0.354 8e-88
224135235 708 predicted protein [Populus trichocarpa] 0.924 0.728 0.345 7e-87
15238657 716 cyclic nucleotide-gated ion channel 1 [A 0.885 0.689 0.363 2e-86
297796139 716 hypothetical protein ARALYDRAFT_918383 [ 0.885 0.689 0.359 6e-86
356509281 715 PREDICTED: cyclic nucleotide-gated ion c 0.876 0.683 0.366 1e-85
356516029 715 PREDICTED: cyclic nucleotide-gated ion c 0.919 0.717 0.352 1e-85
6969231 708 cyclic nucleotide-gated calmodulin-bindi 0.872 0.687 0.365 7e-85
225462733 709 PREDICTED: cyclic nucleotide-gated ion c 0.874 0.688 0.361 1e-83
356551532 718 PREDICTED: cyclic nucleotide-gated ion c 0.876 0.681 0.357 3e-83
255545024 838 Cyclic nucleotide-gated ion channel, put 0.919 0.612 0.343 1e-82
>gi|224118210|ref|XP_002317760.1| predicted protein [Populus trichocarpa] gi|222858433|gb|EEE95980.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  331 bits (848), Expect = 8e-88,   Method: Compositional matrix adjust.
 Identities = 201/567 (35%), Positives = 306/567 (53%), Gaps = 55/567 (9%)

Query: 27  NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
           NK ++L  +IA+ LDP FFY+P + D  KC+  + T+ ITA+V+RS  D   +LHI  + 
Sbjct: 91  NKIFVLSCLIAVSLDPLFFYVPVIDDGKKCLSLDRTMEITASVLRSFTDIFYILHIIFQF 150

Query: 87  READKKENQRKKFKHLWQQLKNFKGGREVL-ED--PMVRMWM--LFFIDGLAILPIPQVL 141
           R      + R               GR VL ED   + + ++   F ID LA+LP+PQV+
Sbjct: 151 RTGFIAPSSRV-------------FGRGVLVEDTWAIAKRYLSSYFLIDILAVLPLPQVV 197

Query: 142 VIFPIRDTGFSTAMT-------FFVLQYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFY 194
           ++  IR    S  +          + QY+ R +R Y L+ + +  SG++ +  W   AF 
Sbjct: 198 ILIIIRKMAGSRNLNTKNLLKFVVIFQYVPRFMRIYPLYKE-VTTSGILTETAWAGAAFN 256

Query: 195 VLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKC--FGDYKLLNDSC 252
           + LY+ + H+ GA WY ++IE+ T+CWR+A   H G S   +FC+     G+   L++ C
Sbjct: 257 LFLYMLASHVLGAFWYLFSIERETNCWRQACGKHAGCSRELLFCDTAGSVGNLSFLDNYC 316

Query: 253 PISTGNTTRYNFGIYKDALQSGIVRETY-FPKKLLRCLHWGLQKLSAFGQDLETSDDVGE 311
           PI T N T +NFGI+ DALQSG+V  +  FP+K   C  WGLQ LS+ GQ+L+TS  V E
Sbjct: 317 PIITPNETVFNFGIFLDALQSGVVSSSMDFPQKFFYCFWWGLQNLSSLGQNLKTSTYVWE 376

Query: 312 NIFAIWMTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKI 367
             FA++++I G+VLF FLIG MQ    S TTR  ++  K R  + W   + +   +R +I
Sbjct: 377 ICFAVFISISGLVLFSFLIGNMQTYLQSTTTRLEEMRIKRRDAEQWMSHRLLPDSIRERI 436

Query: 368 REAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGC 427
           R  ++        +  + LV +LP D  + +K H    LL ++  FE  ++  LD LC  
Sbjct: 437 RRYEQYRWQETRGVDEEMLVHNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDR 496

Query: 428 LKPVFFSERTTIISEGESIHEMLFVLEGQ-ISIYSKSKLIGLKRQE---DGNYCGEEIID 483
           LKPV ++E + I+ EG+ + EMLFV+ G+ ++I +     G    E    G++CGEE++ 
Sbjct: 497 LKPVLYTEESYIVREGDPVDEMLFVMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLT 556

Query: 484 WAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ------------- 530
           WA +  SS  +LPISTRT+   T VE F L  D+LK   +  RR +              
Sbjct: 557 WALDPQSS-SNLPISTRTVRTITEVEAFALMADDLKFVASQFRRLHSKQLRHTFRFYSQQ 615

Query: 531 ----SVSFLQLFWRFKTFKQMQMKRRQ 553
               +  F+Q  WR  + K+++   RQ
Sbjct: 616 WRTWAACFIQAAWRRYSKKKLEESLRQ 642

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224135235|ref|XP_002322017.1| predicted protein [Populus trichocarpa] gi|222869013|gb|EEF06144.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15238657|ref|NP_200125.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] gi|38502855|sp|O65717.1|CNGC1_ARATH RecName: Full=Cyclic nucleotide-gated ion channel 1; Short=AtCNGC1; AltName: Full=Cyclic nucleotide- and calmodulin-regulated ion channel 1 gi|13877753|gb|AAK43954.1|AF370139_1 putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|3096947|emb|CAA76178.1| putative cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|9757994|dbj|BAB08416.1| cyclic nucleotide-regulated ion channel [Arabidopsis thaliana] gi|24030485|gb|AAN41391.1| putative cyclic nucleotide-regulated ion channel protein [Arabidopsis thaliana] gi|332008928|gb|AED96311.1| cyclic nucleotide-gated ion channel 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297796139|ref|XP_002865954.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] gi|297311789|gb|EFH42213.1| hypothetical protein ARALYDRAFT_918383 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356509281|ref|XP_003523379.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356516029|ref|XP_003526699.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|6969231|gb|AAF33670.1|AF079872_1 cyclic nucleotide-gated calmodulin-binding ion channel [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|225462733|ref|XP_002268992.1| PREDICTED: cyclic nucleotide-gated ion channel 1 [Vitis vinifera] gi|302143681|emb|CBI22542.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356551532|ref|XP_003544128.1| PREDICTED: cyclic nucleotide-gated ion channel 1-like [Glycine max] Back     alignment and taxonomy information
>gi|255545024|ref|XP_002513573.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] gi|223547481|gb|EEF48976.1| Cyclic nucleotide-gated ion channel, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query558
TAIR|locus:2163776716 CNGC1 "cyclic nucleotide gated 0.908 0.708 0.364 6.4e-83
TAIR|locus:2039084706 CNGC3 "cyclic nucleotide gated 0.894 0.706 0.358 2.1e-75
TAIR|locus:2125206696 CNGC13 "cyclic nucleotide-gate 0.890 0.714 0.348 2.5e-74
TAIR|locus:2061401747 CNGC6 "cyclic nucleotide-gated 0.896 0.669 0.321 1.8e-70
TAIR|locus:2118836733 CNGC9 "cyclic nucleotide gated 0.887 0.675 0.324 2.7e-68
TAIR|locus:2174448717 CNGC5 "cyclic nucleotide gated 0.867 0.675 0.321 9.7e-64
TAIR|locus:2200502738 CNGC7 "cyclic nucleotide gated 0.924 0.699 0.294 1.9e-60
TAIR|locus:2013139753 CNGC8 "cyclic nucleotide gated 0.894 0.662 0.292 5e-60
TAIR|locus:2039114649 CNGC12 "cyclic nucleotide-gate 0.865 0.744 0.309 5e-60
TAIR|locus:2039099621 CNGC11 "cyclic nucleotide-gate 0.905 0.813 0.307 1.7e-59
TAIR|locus:2163776 CNGC1 "cyclic nucleotide gated channel 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
 Identities = 196/537 (36%), Positives = 305/537 (56%)

Query:    27 NKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSEL 86
             NK ++L  +IA+ LDP FFY+P + D  KC+  +  + ITA+V+RS  D   +LHI  + 
Sbjct:    96 NKIFVLACIIAVSLDPLFFYVPIIDDAKKCLGIDKKMEITASVLRSFTDVFYVLHIIFQF 155

Query:    87 READKKENQRKKFKHLWQQLKNFKGGREVLEDPMVRMWMLFFIDGLAILPIPQ--VLVIF 144
             R      + R   + +  + K     RE+ +  +      F ID LA+LP+PQ  +L+I 
Sbjct:   156 RTGFIAPSSRVFGRGVLVEDK-----REIAKRYLSSH---FIIDILAVLPLPQMVILIII 207

Query:   145 P-IR-DTGFSTA-MTFFVL--QYLLRVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYL 199
             P +R  +  +T  M  F++  QY+ R IR Y L+ +    SG++ +  W   AF + LY+
Sbjct:   208 PHMRGSSSLNTKNMLKFIVFFQYIPRFIRIYPLYKEVTRTSGILTETAWAGAAFNLFLYM 267

Query:   200 QSGHMFGALWYYYAIEKATDCWREASE-NHTGRSHSYVFCN-KCFGDYKLLNDSCPISTG 257
              + H+FGA WY ++IE+ T CW++A E N+       ++C+ +  G    LN+SCPI T 
Sbjct:   268 LASHVFGAFWYLFSIERETVCWKQACERNNPPCISKLLYCDPETAGGNAFLNESCPIQTP 327

Query:   258 NTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIW 317
             NTT ++FGI+ DALQSG+V    FP+K   C  WGLQ LS+ GQ+L+TS  + E  FA++
Sbjct:   328 NTTLFDFGIFLDALQSGVVESQDFPQKFFYCFWWGLQNLSSLGQNLKTSTYIWEICFAVF 387

Query:   318 MTIYGVVLFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRE 373
             ++I G+VLF FLIG MQ    S TTR  ++  K R  + W   + +   +R +IR  ++ 
Sbjct:   388 ISIAGLVLFSFLIGNMQTYLQSTTTRLEEMRVKRRDAEQWMSHRLLPENLRKRIRRYEQY 447

Query:   374 NLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFF 433
                    +  ++L+S+LP D  + +K H    LL ++  FE  ++  LD LC  L+PV +
Sbjct:   448 KWQETRGVDEENLLSNLPKDLRRDIKRHLCLALLMRVPMFEKMDEQLLDALCDRLQPVLY 507

Query:   434 SERTTIISEGESIHEMLFVLEGQI-SIYSKSKLIGLKRQE---DGNYCGEEIIDWAENQS 489
             +E + I+ EG+ + EMLF++ G++ +I +     G    E    G++CGEE++ WA +  
Sbjct:   508 TEESYIVREGDPVDEMLFIMRGKLLTITTNGGRTGFLNSEYLGAGDFCGEELLTWALDPH 567

Query:   490 SSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSVSFLQLFWRFKTFKQ 546
             SS  +LPISTRT+ A   VE F LK D+LK   +  RR +      QL   F+ + Q
Sbjct:   568 SS-SNLPISTRTVRALMEVEAFALKADDLKFVASQFRRLHSK----QLRHTFRYYSQ 619
GO:0005216 "ion channel activity" evidence=IEA
GO:0005261 "cation channel activity" evidence=ISS
GO:0005516 "calmodulin binding" evidence=ISS;TAS;IPI
GO:0005886 "plasma membrane" evidence=ISM;IDA
GO:0006811 "ion transport" evidence=IEA
GO:0016020 "membrane" evidence=IEA
GO:0030551 "cyclic nucleotide binding" evidence=ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005242 "inward rectifier potassium channel activity" evidence=IGI
GO:0005221 "intracellular cyclic nucleotide activated cation channel activity" evidence=IGI
GO:0006813 "potassium ion transport" evidence=IGI
GO:0006816 "calcium ion transport" evidence=IGI
TAIR|locus:2039084 CNGC3 "cyclic nucleotide gated channel 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125206 CNGC13 "cyclic nucleotide-gated channel 13" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2061401 CNGC6 "cyclic nucleotide-gated channel 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118836 CNGC9 "cyclic nucleotide gated channel 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2174448 CNGC5 "cyclic nucleotide gated channel 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200502 CNGC7 "cyclic nucleotide gated channel 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2013139 CNGC8 "cyclic nucleotide gated channel 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039114 CNGC12 "cyclic nucleotide-gated channel 12" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039099 CNGC11 "cyclic nucleotide-gated channels" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00120158
hypothetical protein (709 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
cd00038115 cd00038, CAP_ED, effector domain of the CAP family 6e-08
smart00100120 smart00100, cNMP, Cyclic nucleotide-monophosphate 2e-05
>gnl|CDD|237999 cd00038, CAP_ED, effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information 
 Score = 50.8 bits (122), Expect = 6e-08
 Identities = 21/121 (17%), Positives = 41/121 (33%), Gaps = 13/121 (10%)

Query: 413 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIG---LK 469
           F   +D  L+ L   L+   F     II +G+    +  VL G + +Y   +      + 
Sbjct: 2   FSGLDDEELEELADALEERRFPAGEVIIRQGDPADSLYIVLSGSVEVYKLDEDGREQIVG 61

Query: 470 RQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFN 529
               G+  GE  +                + T+ A T+ E   L   + +  +  +    
Sbjct: 62  FLGPGDLFGELAL----------LGNGPRSATVRALTDSELLVLPRSDFRRLLQEYPELA 111

Query: 530 Q 530
           +
Sbjct: 112 R 112

In all cases binding of the effector leads to conformational changes and the ability to activate transcription. Cyclic nucleotide-binding domain similar to CAP are also present in cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) and vertebrate cyclic nucleotide-gated ion-channels. Cyclic nucleotide-monophosphate binding domain; proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues; the best studied is the prokaryotic catabolite gene activator, CAP, where such a domain is known to be composed of three alpha-helices and a distinctive eight-stranded, antiparallel beta-barrel structure; three conserved glycine residues are thought to be essential for maintenance of the structural integrity of the beta-barrel; CooA is a homodimeric transcription factor that belongs to CAP family; cAMP- and cGMP-dependent protein kinases (cAPK and cGPK) contain two tandem copies of the cyclic nucleotide-binding domain; cAPK's are composed of two different subunits, a catalytic chain and a regulatory chain, which contains both copies of the domain; cGPK's are single chain enzymes that include the two copies of the domain in their N-terminal section; also found in vertebrate cyclic nucleotide-gated ion-channels. Length = 115
>gnl|CDD|197516 smart00100, cNMP, Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 558
KOG0498 727 consensus K+-channel ERG and related proteins, con 100.0
PLN03192 823 Voltage-dependent potassium channel; Provisional 100.0
KOG0500536 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG0501 971 consensus K+-channel KCNQ [Inorganic ion transport 100.0
KOG0499 815 consensus Cyclic nucleotide-gated cation channel C 100.0
KOG3713477 consensus Voltage-gated K+ channel KCNB/KCNC [Inor 99.45
PF00520200 Ion_trans: Ion transport protein calcium channel s 99.44
PRK09392236 ftrB transcriptional activator FtrB; Provisional 99.42
cd00038115 CAP_ED effector domain of the CAP family of transc 99.37
PF0002791 cNMP_binding: Cyclic nucleotide-binding domain; In 99.34
PRK11753211 DNA-binding transcriptional dual regulator Crp; Pr 99.33
smart00100120 cNMP Cyclic nucleotide-monophosphate binding domai 99.27
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.27
KOG1113 368 consensus cAMP-dependent protein kinase types I an 99.21
KOG1545507 consensus Voltage-gated shaker-like K+ channel KCN 99.2
PRK11161235 fumarate/nitrate reduction transcriptional regulat 99.19
KOG0614 732 consensus cGMP-dependent protein kinase [Signal tr 99.18
COG0664214 Crp cAMP-binding proteins - catabolite gene activa 99.18
PLN02868 413 acyl-CoA thioesterase family protein 99.16
COG2905 610 Predicted signal-transduction protein containing c 99.16
PRK10402226 DNA-binding transcriptional activator YeiL; Provis 99.14
PF0788579 Ion_trans_2: Ion channel; InterPro: IPR013099 This 99.12
KOG1420 1103 consensus Ca2+-activated K+ channel Slowpoke, alph 98.99
KOG1419 654 consensus Voltage-gated K+ channel KCNQ [Inorganic 98.99
TIGR03697193 NtcA_cyano global nitrogen regulator NtcA, cyanoba 98.92
KOG1113368 consensus cAMP-dependent protein kinase types I an 98.91
PRK09391230 fixK transcriptional regulator FixK; Provisional 98.88
PRK13918202 CRP/FNR family transcriptional regulator; Provisio 98.8
PRK10537393 voltage-gated potassium channel; Provisional 98.4
KOG4390632 consensus Voltage-gated A-type K+ channel KCND [In 98.26
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.98
KOG3684489 consensus Ca2+-activated K+ channel proteins (inte 97.78
PF01007336 IRK: Inward rectifier potassium channel; InterPro: 97.62
PF0841277 Ion_trans_N: Ion transport protein N-terminal; Int 97.39
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 97.34
KOG2968 1158 consensus Predicted esterase of the alpha-beta hyd 97.27
PRK11832207 putative DNA-binding transcriptional regulator; Pr 97.04
PF04831153 Popeye: Popeye protein conserved region; InterPro: 96.98
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 96.0
KOG4404350 consensus Tandem pore domain K+ channel TASK3/THIK 95.7
KOG3827400 consensus Inward rectifier K+ channel [Inorganic i 95.07
KOG1418433 consensus Tandem pore domain K+ channel [Inorganic 93.46
KOG2302 1956 consensus T-type voltage-gated Ca2+ channel, pore- 93.39
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 93.32
KOG3542 1283 consensus cAMP-regulated guanine nucleotide exchan 90.86
KOG3193 1087 consensus K+ channel subunit [Inorganic ion transp 90.36
COG4709195 Predicted membrane protein [Function unknown] 89.43
PF08006181 DUF1700: Protein of unknown function (DUF1700); In 86.46
PLN032231634 Polycystin cation channel protein; Provisional 82.62
>KOG0498 consensus K+-channel ERG and related proteins, contain PAS/PAC sensor domain [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-90  Score=745.43  Aligned_cols=481  Identities=29%  Similarity=0.529  Sum_probs=423.6

Q ss_pred             hhhccCCChHHHHHHHHHHHHHHHHHhhcceeEEEeeecCCCceEeeCCCcceeehhhHHHHHHHHHHHHHHhhhhceec
Q 008660           13 IIVLYRKAIAAAIENKRYLLLNVIAMILDPFFFYIPDLKDEIKCIHCNDTLGITATVIRSILDFLKLLHISSELREADKK   92 (558)
Q Consensus        13 ~~ii~P~s~~~~~Wd~~~~~~~~~~~~~~p~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~f~~Di~l~f~t~y~~   92 (558)
                      .+|++|.|++++.||.+++++|+|+++++|++||++.......|  .|......++++|.++|++|++||++||||||.+
T Consensus        67 ~~Ii~P~s~~~~~W~~~~Ll~~iya~~v~P~~f~f~~~~~~~~~--~d~~~~~~l~v~d~ivD~fflvdIvL~Frtayv~  144 (727)
T KOG0498|consen   67 KWILDPYSPFYRVWNKFFLLLVIYAAFVDPLFFYFLLIDDERKC--IDGKLAAPLTVLDTIVDIFFLVDIVLNFRTAYVD  144 (727)
T ss_pred             ceeECCCChHHHHHHHHHHHHHHHHHHhccceeeEEeccccccc--ccccccCceeeHHHHHHHHHHHHHHHhheEEEEC
Confidence            46999999999999999999999999999999999999877777  7777888999999999999999999999999999


Q ss_pred             cchhhhhhhhhhhccccccCCceecChhHHh----hhhhhhhhhhhccccceeeeeeccCCC----CcchhhHHHHHHHH
Q 008660           93 ENQRKKFKHLWQQLKNFKGGREVLEDPMVRM----WMLFFIDGLAILPIPQVLVIFPIRDTG----FSTAMTFFVLQYLL  164 (558)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~g~~v~d~~~I~----~~~F~iDlls~lP~~~i~~~~~~~~~~----~~~~~~~~~l~rl~  164 (558)
                      +++                 -++|.||++||    |+||++|++|++|+|++..|..+....    ......++.++||+
T Consensus       145 ~~s-----------------~elV~dpk~IA~rYl~twFiiDlis~lP~~~i~~~~~~~~~~~~~~~~~l~~il~~~rL~  207 (727)
T KOG0498|consen  145 PSS-----------------YELVDDPKKIAKRYLKTWFLIDLISTLPFDQIVVLVVIGSTSLALESTILVGILLLQRLP  207 (727)
T ss_pred             CCC-----------------ceeeeCHHHHHHHHHhhhHHHHHHHhcChhhheeeeeecccchhhhHHHHHHHHHHHHHH
Confidence            843                 37999999999    999999999999999999887651111    11125688899999


Q ss_pred             hHHHhhhhhHhhHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcccchhHHHhhcccCCCCCcceecCCCccc
Q 008660          165 RVIRTYFLFTDAIEVSGVIADATWGIFAFYVLLYLQSGHMFGALWYYYAIEKATDCWREASENHTGRSHSYVFCNKCFGD  244 (558)
Q Consensus       165 Rl~r~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~H~~aC~w~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (558)
                      ||.|+.++++++.+..++..+++|+.++++++++++++||.||+||++|.++.++||+++                    
T Consensus       208 Rl~Rv~~l~~r~~k~~~~v~~~awa~~a~ll~~~~l~sH~~gc~wYlia~~~~~~~~~~~--------------------  267 (727)
T KOG0498|consen  208 RLRRVIPLFARLEKDTGFVYETAWAGAALLLSVYLLASHWAGCIWYLIAIERPASCPRKA--------------------  267 (727)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccc--------------------
Confidence            999999999999999999999999998899999999999999999999998888887643                    


Q ss_pred             cccccccCCCCCCCCCccccchhhhhhhcCccccCchhhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHH
Q 008660          245 YKLLNDSCPISTGNTTRYNFGIYKDALQSGIVRETYFPKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVV  324 (558)
Q Consensus       245 ~sW~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~s~~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~  324 (558)
                       +|+...+....+.+..+.||+|            +++.+|++|+||+++||||+|||+++|+|..|++|+|++|++|.+
T Consensus       268 -tw~~~l~~~~~~~~~~~~fg~~------------s~~~kY~~aLyw~l~tLstvG~g~~~s~~~~E~iFsi~~mi~Gll  334 (727)
T KOG0498|consen  268 -TWLGSLGRLLSCYNLSFTFGIY------------SLALKYVYALYWGLSTLSTVGYGLVHANNMGEKIFSIFIMLFGLL  334 (727)
T ss_pred             -ccccccccccccCcccccccch------------hHHHHHHHHHHHHhhHhhhccCCccCCCCcHHHHHHHHHHHHhHH
Confidence             4554421100122333567744            566799999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHH
Q 008660          325 LFVFLIGRMQ----SETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKL  400 (558)
Q Consensus       325 ~fa~iig~i~----s~~~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~  400 (558)
                      +||++||||+    +++++.++|+.|+.++++||++|++|++||+||++|++|+|+.++|+||++++++||+.||.||+.
T Consensus       335 L~A~lIGNmt~~iqs~tsR~~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~kw~~t~Gvdee~lL~~LP~~LR~dI~~  414 (727)
T KOG0498|consen  335 LFAYLIGNMTALLQSLTSRTEEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYKWLATRGVDEEELLQSLPKDLRRDIKR  414 (727)
T ss_pred             HHHHHHhhHHHhHHHHhHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhccCcCHHHHHHhCCHHHHHHHHH
Confidence            9999999999    667888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEE--cCceEEEEEecCCCeee
Q 008660          401 HFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS--KSKLIGLKRQEDGNYCG  478 (558)
Q Consensus       401 ~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~--~~~~~~~~~l~~G~~fG  478 (558)
                      |+|.++++++|+|+++|++++.+|+.+++++.|+|||+|++|||+.++||||.+|.+++.+  .+|..+...+++|++||
T Consensus       415 hL~~~lv~~vpLF~~md~~~L~al~~rlk~~~f~pge~iireGd~v~~myFI~rG~le~~~~~~g~~~~~~~L~~Gd~~G  494 (727)
T KOG0498|consen  415 HLCLDLVRKVPLFAGMDDGLLDALCSRLKPEYFTPGEYIIREGDPVTDMYFIVRGSLESITTDGGGFFVVAILGPGDFFG  494 (727)
T ss_pred             HHhHHHHhhCchhhcCCHHHHHHHHHHhhhhccCCCCeEEecCCccceeEEEEeeeEEEEEccCCceEEEEEecCCCccc
Confidence            9999999999999999999999999999999999999999999999999999999999765  33555788999999999


Q ss_pred             hhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHHHHHhHhhhhhh-----HHHHHhHHHHHHHHHHHHHhh
Q 008660          479 EEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRRFNQSV-----SFLQLFWRFKTFKQMQMKRRQ  553 (558)
Q Consensus       479 e~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~~~-----~~~~~~~r~~~~~~~~~~~~~  553 (558)
                      |+.++||+..+        +++||+|+|.|+++.|+++||..++++||++++++     ++.+..||--+...+|..-+|
T Consensus       495 eEl~~~~~~~p--------~t~TVralt~~el~~L~~~dL~~V~~~f~~~~~~~l~~~~r~~s~~~r~~aa~~iq~a~r~  566 (727)
T KOG0498|consen  495 EELLTWCLDLP--------QTRTVRALTYCELFRLSADDLKEVLQQFRRLGSKFLQHTFRYYSHLWRTWAACFIQAAWRR  566 (727)
T ss_pred             hHHHHHHhcCC--------CCceeehhhhhhHHhccHHHHHHHHHHhHHHHHHHHHhHHHHhhhhhhhhhhhhHHHHHHH
Confidence            88777777544        58899999999999999999999999999998753     333456777666666654443

>PLN03192 Voltage-dependent potassium channel; Provisional Back     alignment and domain information
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG0501 consensus K+-channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG0499 consensus Cyclic nucleotide-gated cation channel CNCG4 [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins Back     alignment and domain information
>PRK09392 ftrB transcriptional activator FtrB; Provisional Back     alignment and domain information
>cd00038 CAP_ED effector domain of the CAP family of transcription factors; members include CAP (or cAMP receptor protein (CRP)), which binds cAMP, FNR (fumarate and nitrate reduction), which uses an iron-sulfur cluster to sense oxygen) and CooA, a heme containing CO sensor Back     alignment and domain information
>PF00027 cNMP_binding: Cyclic nucleotide-binding domain; InterPro: IPR000595 Proteins that bind cyclic nucleotides (cAMP or cGMP) share a structural domain of about 120 residues [, , ] Back     alignment and domain information
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional Back     alignment and domain information
>smart00100 cNMP Cyclic nucleotide-monophosphate binding domain Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>KOG1545 consensus Voltage-gated shaker-like K+ channel KCNA [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK11161 fumarate/nitrate reduction transcriptional regulator; Provisional Back     alignment and domain information
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>COG0664 Crp cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms] Back     alignment and domain information
>PLN02868 acyl-CoA thioesterase family protein Back     alignment and domain information
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms] Back     alignment and domain information
>PRK10402 DNA-binding transcriptional activator YeiL; Provisional Back     alignment and domain information
>PF07885 Ion_trans_2: Ion channel; InterPro: IPR013099 This entry includes the two membrane helix type ion channels found in bacteria [] Back     alignment and domain information
>KOG1420 consensus Ca2+-activated K+ channel Slowpoke, alpha subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG1419 consensus Voltage-gated K+ channel KCNQ [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03697 NtcA_cyano global nitrogen regulator NtcA, cyanobacterial Back     alignment and domain information
>KOG1113 consensus cAMP-dependent protein kinase types I and II, regulatory subunit [Signal transduction mechanisms] Back     alignment and domain information
>PRK09391 fixK transcriptional regulator FixK; Provisional Back     alignment and domain information
>PRK13918 CRP/FNR family transcriptional regulator; Provisional Back     alignment and domain information
>PRK10537 voltage-gated potassium channel; Provisional Back     alignment and domain information
>KOG4390 consensus Voltage-gated A-type K+ channel KCND [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF01007 IRK: Inward rectifier potassium channel; InterPro: IPR013521 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF08412 Ion_trans_N: Ion transport protein N-terminal; InterPro: IPR013621 This domain is found to the N terminus of IPR005821 from INTERPRO in voltage- and cyclic nucleotide-gated K/Na ion channels Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2968 consensus Predicted esterase of the alpha-beta hydrolase superfamily (Neuropathy target esterase), contains cAMP-binding domains [General function prediction only] Back     alignment and domain information
>PRK11832 putative DNA-binding transcriptional regulator; Provisional Back     alignment and domain information
>PF04831 Popeye: Popeye protein conserved region; InterPro: IPR006916 The Popeye (POP) family of proteins, is restricted to vertebrates and is preferentially expressed in developing and adult striated muscle Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG3827 consensus Inward rectifier K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1418 consensus Tandem pore domain K+ channel [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG3542 consensus cAMP-regulated guanine nucleotide exchange factor [Signal transduction mechanisms] Back     alignment and domain information
>KOG3193 consensus K+ channel subunit [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4709 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT) Back     alignment and domain information
>PLN03223 Polycystin cation channel protein; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
1wgp_A137 Solution Structure Of The Cnmp-Binding Domain From 3e-17
>pdb|1WGP|A Chain A, Solution Structure Of The Cnmp-Binding Domain From Arabidopsis Thaliana Cyclic Nucleotide-Regulated Ion Channel Length = 137 Back     alignment and structure 
Iteration: 1

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 44/119 (36%), Positives = 72/119 (60%), Gaps = 5/119 (4%)
Query: 413 FENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYS----KSKLIGL 468
           FEN ++  LD +C  LKP  F+E++ ++ EG+ ++EMLF++ G++   +    +S     
Sbjct: 14  FENMDERLLDAICERLKPCLFTEKSYLVREGDPVNEMLFIIRGRLESVTTDGGRSGFYNR 73
Query: 469 KRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHGIALHRR 527
              ++G++CG+E++ WA +  S   +LP STRT+ A T VE F L  DELK   +  RR
Sbjct: 74  SLLKEGDFCGDELLTWALDPKSG-SNLPSSTRTVKALTEVEAFALIADELKFVASQFRR 131

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query558
3ukn_A212 Novel protein similar to vertebrate potassium VOL 4e-25
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 1e-23
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 1e-22
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 4e-21
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 6e-20
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-04
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 2e-07
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 8e-06
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 3e-07
3tnp_B 416 CAMP-dependent protein kinase type II-beta regula 5e-05
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 1e-06
3shr_A 299 CGMP-dependent protein kinase 1; cyclic nucleotide 2e-04
4din_B381 CAMP-dependent protein kinase type I-beta regulat 1e-06
4din_B 381 CAMP-dependent protein kinase type I-beta regulat 4e-05
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 5e-06
2qcs_B 291 CAMP-dependent protein kinase type I-alpha regula 5e-06
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 7e-06
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 3e-04
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 6e-04
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 9e-04
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 9e-04
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Length = 212 Back     alignment and structure
 Score =  102 bits (256), Expect = 4e-25
 Identities = 34/205 (16%), Positives = 78/205 (38%), Gaps = 14/205 (6%)

Query: 329 LIGRMQSETTRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVS 388
           +  RM S  +  H    + + +K +     +   +  ++ E  +    + + I +  L+ 
Sbjct: 3   MDQRMYSRRSLYH---TRTKDLKDFIRVHRLPKALAQRMLECFQTTWSVNNGIDVSELLK 59

Query: 389 DLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIISEGESIHE 448
           D PD+    + +H  + LL Q+  FE+     L  L   +K  F +    +I +G+++  
Sbjct: 60  DFPDELRADIAMHLNKELL-QLPLFESASRGCLRSLSLIIKTSFCAPGEFLIRQGDALQA 118

Query: 449 MLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNV 508
           + FV  G + +   +    L     G+  G + +            +  +   + A T  
Sbjct: 119 IYFVCSGSMEVLKDNT--VLAILGKGDLIGSDSLTKE--------QVIKTNANVKALTYC 168

Query: 509 EGFTLKTDELKHGIALHRRFNQSVS 533
           +   +    L+  + L+  + Q   
Sbjct: 169 DLQYISLKGLREVLRLYPEYAQKFV 193
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Length = 198 Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Length = 202 Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Length = 137 Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Length = 160 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Length = 246 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Length = 416 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Length = 299 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Length = 381 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Length = 291 Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Length = 138 Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Length = 213 Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Length = 187 Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Length = 139 Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Length = 142 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
3beh_A355 MLL3241 protein; transmembrane protein, membrane p 100.0
2ptm_A198 Hyperpolarization-activated (IH) channel; ION chan 100.0
3bpz_A202 Potassium/sodium hyperpolarization-activated cycli 99.98
3ukn_A212 Novel protein similar to vertebrate potassium VOL 99.97
1orq_C223 Potassium channel; voltage-dependent, KVAP, FAB co 99.87
4f8a_A160 Potassium voltage-gated channel subfamily H membe; 99.82
2r9r_B514 Paddle chimera voltage gated potassium channel KV; 99.78
3ocp_A139 PRKG1 protein; serine/threonine kinase, TF2I and I 99.75
3gyd_A187 CNMP-BD protein, cyclic nucleotide-binding domain; 99.68
3idb_B161 CAMP-dependent protein kinase type II-beta regulat 99.68
2pqq_A149 Putative transcriptional regulator; APC7345, strep 99.67
3mdp_A142 Cyclic nucleotide-binding domain (CNMP-BD) protei; 99.66
1wgp_A137 Probable cyclic nucleotide-gated ION channel 6; cy 99.65
3shr_A 299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.64
3pna_A154 CAMP-dependent protein kinase type I-alpha regula 99.64
1vp6_A138 CNBD, cyclic-nucleotide binding domain of mesorhiz 99.63
3vou_A148 ION transport 2 domain protein, voltage-gated SOD 99.62
2z69_A154 DNR protein; beta barrel, dimerization helix, tran 99.62
4ev0_A216 Transcription regulator, CRP family; CAMP binding, 99.6
2a9h_A155 Voltage-gated potassium channel; potassium channel 99.6
3dn7_A194 Cyclic nucleotide binding regulatory protein; stru 99.6
2d93_A134 RAP guanine nucleotide exchange factor 6; CNMP_bin 99.59
3fx3_A237 Cyclic nucleotide-binding protein; helix_TURN_heli 99.57
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.57
3d0s_A227 Transcriptional regulatory protein; CAMP receptor 99.56
2ih3_C122 Voltage-gated potassium channel; ION channel D-ami 99.56
3e97_A231 Transcriptional regulator, CRP/FNR family; YP_6044 99.55
4ava_A 333 Lysine acetyltransferase; allosteric regulation, d 99.55
1zyb_A232 Transcription regulator, CRP family; NP_813211.1, 99.55
3dv8_A220 Transcriptional regulator, CRP/FNR family; cyclic 99.54
3iwz_A230 CAP-like, catabolite activation-like protein; XCC, 99.54
3of1_A246 CAMP-dependent protein kinase regulatory subunit; 99.53
3shr_A299 CGMP-dependent protein kinase 1; cyclic nucleotide 99.52
4h33_A137 LMO2059 protein; bilayers, KVLM, lipidic cubic pha 99.52
2qcs_B291 CAMP-dependent protein kinase type I-alpha regula 99.51
2gau_A232 Transcriptional regulator, CRP/FNR family; structu 99.51
3dkw_A227 DNR protein; CRP-FNR, HTH, beta barrel, dimerizati 99.5
2qcs_B 291 CAMP-dependent protein kinase type I-alpha regula 99.5
3tnp_B 416 CAMP-dependent protein kinase type II-beta regula 99.49
1o7f_A 469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.47
3ryp_A210 Catabolite gene activator; CAMP receptor protein ( 99.46
4din_B 381 CAMP-dependent protein kinase type I-beta regulat 99.45
2oz6_A207 Virulence factor regulator; winged helix, helix-tu 99.44
3eff_K139 Voltage-gated potassium channel; FULL length KCSA, 99.44
2fmy_A220 COOA, carbon monoxide oxidation system transcripti 99.43
4din_B381 CAMP-dependent protein kinase type I-beta regulat 99.42
1o7f_A469 CAMP-dependent RAP1 guanine-nucleotide exchange fa 99.41
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.41
1ft9_A222 Carbon monoxide oxidation system transcription reg 99.4
3kcc_A260 Catabolite gene activator; helix-turn-helix, CAMP, 99.39
3tnp_B416 CAMP-dependent protein kinase type II-beta regula 99.39
1o5l_A213 Transcriptional regulator, CRP family; TM1171, str 99.37
3cf6_E 694 RAP guanine nucleotide exchange factor (GEF) 4; EP 99.34
3e6c_C250 CPRK, cyclic nucleotide-binding protein; CPRK, hal 99.31
2q67_A114 Potassium channel protein; inverted teepee, helix 99.3
2k1e_A103 Water soluble analogue of potassium channel, KCSA; 99.27
3la7_A243 Global nitrogen regulator; activator, DNA-binding, 99.23
4f7z_A 999 RAP guanine nucleotide exchange factor 4; cyclic n 99.23
3ouf_A97 Potassium channel protein; ION channel, membrane, 99.21
2bgc_A238 PRFA; bacterial infection, human pathogen, transcr 99.2
3ldc_A82 Calcium-gated potassium channel MTHK; transmembran 99.1
3rvy_A285 ION transport protein; tetrameric ION channel, vol 99.02
3pjs_K166 KCSA, voltage-gated potassium channel; ION channel 99.01
3b02_A195 Transcriptional regulator, CRP family; structural 98.98
1xl4_A301 Inward rectifier potassium channel; integral membr 98.89
1p7b_A333 Integral membrane channel and cytosolic domains; t 98.86
3um7_A309 Potassium channel subfamily K member 4; potassium 98.86
2zcw_A202 TTHA1359, transcriptional regulator, FNR/CRP famil 98.83
2qks_A321 KIR3.1-prokaryotic KIR channel chimera; G-protein 98.68
4gx0_A 565 TRKA domain protein; membrane protein, ION channel 98.54
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.51
3sya_A340 G protein-activated inward rectifier potassium CH; 98.5
3ukm_A280 Potassium channel subfamily K member 1; membrane p 98.39
3um7_A309 Potassium channel subfamily K member 4; potassium 98.37
3spc_A343 Inward-rectifier K+ channel KIR2.2; PIP, membrane 98.33
1lnq_A336 MTHK channels, potassium channel related protein; 98.19
4dxw_A229 Navrh, ION transport protein; tetrameric, voltage- 97.76
1ors_C132 Potassium channel; voltage-dependent, voltage sens 94.96
2kyh_A147 KVAP, voltage-gated potassium channel; ION channel 94.83
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A* Back     alignment and structure
Probab=100.00  E-value=9.1e-36  Score=308.65  Aligned_cols=181  Identities=17%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             hhHHHHHHHHHhhhhcccccCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Q 008660          282 PKKLLRCLHWGLQKLSAFGQDLETSDDVGENIFAIWMTIYGVVLFVFLIGRMQSETTRAHKINQKLRQIKHWKHFKDIST  361 (558)
Q Consensus       282 ~~~Y~~slYwa~~T~ttvGyGdi~p~t~~E~~~~i~~mi~G~~~fa~iig~i~s~~~~~~~~~~~~~~i~~~m~~~~lp~  361 (558)
                      +..|..|+||+++||||+||||++|.|..|+++++++|++|.+++|+.+|.+++...+..+  +                
T Consensus       159 f~~~~~s~y~~~~t~ttvGygd~~p~t~~~~~~~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~----------------  220 (355)
T 3beh_A          159 FGSIPQAMWWAVVTLSTTGYGDTIPQSFAGRVLAGAVMMSGIGIFGLWAGILATGFYQEVR--R----------------  220 (355)
T ss_dssp             HSSHHHHHHHHHHHHTTCCCSSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----------------
T ss_pred             cccHHHHHHHHHhheeecCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H----------------
Confidence            4468899999999999999999999999999999999999999999999999865432111  0                


Q ss_pred             HHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCCHHHHHHHHhcCeeEEeCCCCEEEc
Q 008660          362 FVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWEDYSLDHLCGCLKPVFFSERTTIIS  441 (558)
Q Consensus       362 ~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~~~~l~~L~~~l~~~~y~~ge~I~~  441 (558)
                            +++.+                              +.+.++++|+|++++++.+++++..++++.|+|||.|++
T Consensus       221 ------~~~~~------------------------------~~~~l~~~~lf~~ls~~~l~~l~~~~~~~~~~~ge~I~~  264 (355)
T 3beh_A          221 ------GDFVR------------------------------NWQLVAAVPLFQKLGPAVLVEIVRALRARTVPAGAVICR  264 (355)
T ss_dssp             ------HHHHH------------------------------HHC------------------------------------
T ss_pred             ------Hhhcc------------------------------cchhhhcccccccCCHHHHHHHHHhceEEEECCCCEEEe
Confidence                  00100                              236788999999999999999999999999999999999


Q ss_pred             cCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCccccEEEEeceEEEEEEcHHHHHHH
Q 008660          442 EGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPISTRTIIAHTNVEGFTLKTDELKHG  521 (558)
Q Consensus       442 ~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~r~~tv~A~~~~~l~~L~~~~f~~l  521 (558)
                      +||.++++|||.+|.|++...+    ...+++|++|||.++.   ...       ++.++++|.++|+++.+++++|.++
T Consensus       265 ~G~~~~~ly~I~~G~v~v~~~~----~~~l~~G~~fGe~~~l---~~~-------~~~~~~~A~~~~~l~~i~~~~f~~l  330 (355)
T 3beh_A          265 IGEPGDRMFFVVEGSVSVATPN----PVELGPGAFFGEMALI---SGE-------PRSATVSAATTVSLLSLHSADFQML  330 (355)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCcCceEEEEEeeEEEEEECC----eeEECCCCEEeehHHh---CCC-------CcceEEEECccEEEEEEeHHHHHHH
Confidence            9999999999999999976543    2589999999998663   222       2789999999999999999999999


Q ss_pred             HHHhHhhhh
Q 008660          522 IALHRRFNQ  530 (558)
Q Consensus       522 l~~~p~~~~  530 (558)
                      ++++|++.+
T Consensus       331 l~~~p~~~~  339 (355)
T 3beh_A          331 CSSSPEIAE  339 (355)
T ss_dssp             ---------
T ss_pred             HHHCHHHHH
Confidence            999999964
>2ptm_A Hyperpolarization-activated (IH) channel; ION channel, cyclic nucleotide binding domain, C-linker, CAM SPHCN1, HCN; HET: CMP; 1.93A {Strongylocentrotus purpuratus} Back     alignment and structure
>3bpz_A Potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2; CNBD, C-linker, pacemaker, HCN, HCN2, CAP, PKA, CAMP, ION channel; HET: CMP; 1.65A {Mus musculus} PDB: 3ffq_A 1q3e_A* 1q43_A* 1q5o_A* 3u10_A* 2q0a_A* 3etq_A* 3u11_A* 3otf_A* 3u0z_A* Back     alignment and structure
>3ukn_A Novel protein similar to vertebrate potassium VOL channel, subfamily H (EAG-related)...; KCNH, ELK, ERG, CNBD, CNBHD, C-linker, ION channel; 2.20A {Danio rerio} PDB: 3ukt_B 3ukv_B Back     alignment and structure
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A Back     alignment and structure
>4f8a_A Potassium voltage-gated channel subfamily H membe; probable regulatory domain of potassium channel, membrane PR transport protein; 2.20A {Mus musculus} Back     alignment and structure
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B* Back     alignment and structure
>3ocp_A PRKG1 protein; serine/threonine kinase, TF2I and IRAG, transferase; HET: CMP; 2.49A {Homo sapiens} PDB: 3od0_A* 3ogj_A* Back     alignment and structure
>3gyd_A CNMP-BD protein, cyclic nucleotide-binding domain; nucleotide binding protein, structural genomics; HET: MSE CMP; 1.79A {Methylobacillus flagellatus KT} Back     alignment and structure
>3idb_B CAMP-dependent protein kinase type II-beta regulatory subunit, CAMP-dependent protein kinase catalytic subunit alpha; PKA, SPR, affinity; HET: TPO SEP ANP; 1.62A {Rattus norvegicus} PDB: 3idc_B* Back     alignment and structure
>2pqq_A Putative transcriptional regulator; APC7345, streptomyces coelicolor structural genomics, PSI-2, protein structure initiative; 2.00A {Streptomyces coelicolor A3} Back     alignment and structure
>3mdp_A Cyclic nucleotide-binding domain (CNMP-BD) protei; structural genomics, joint center for structural genomics; HET: MSE; 1.90A {Geobacter metallireducens} Back     alignment and structure
>1wgp_A Probable cyclic nucleotide-gated ION channel 6; cyclic nucleotide monophosphate, CNMP, CNMP-binding, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.82.3.2 Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>3pna_A CAMP-dependent protein kinase type I-alpha regula subunit; beta-barrel, CAMP-binding, catalytic subunit, transferase; HET: CMP; 1.50A {Bos taurus} PDB: 3fhi_B* 3iia_A 3plq_A* 1u7e_B* 3pvb_B* Back     alignment and structure
>1vp6_A CNBD, cyclic-nucleotide binding domain of mesorhizobium LOTI CNG potassium channel; dimer helical bundle beta barrel core with cyclic AMP bound; HET: CMP; 1.70A {Mesorhizobium loti} SCOP: b.82.3.2 PDB: 3cl1_A* 2k0g_A* 2kxl_A 3clp_A* 1u12_A 3co2_A Back     alignment and structure
>3vou_A ION transport 2 domain protein, voltage-gated SOD channel; 4-helical bundle, ION channel, membrane, transport protein; 3.20A {Bacillus weihenstephanensis} Back     alignment and structure
>2z69_A DNR protein; beta barrel, dimerization helix, transcription regulator; 2.10A {Pseudomonas aeruginosa} Back     alignment and structure
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus} Back     alignment and structure
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1 Back     alignment and structure
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii} Back     alignment and structure
>2d93_A RAP guanine nucleotide exchange factor 6; CNMP_binding domain, PDZ domain containing guanine nucleotide exchange factor 2, PDZ-GEF2, RA-GEF-2; NMR {Homo sapiens} Back     alignment and structure
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A* Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A* Back     alignment and structure
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ... Back     alignment and structure
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>4ava_A Lysine acetyltransferase; allosteric regulation, domain coupling; HET: ACO; 1.70A {Mycobacterium tuberculosis} PDB: 4avb_A* 4avc_A* Back     alignment and structure
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656} Back     alignment and structure
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV} Back     alignment and structure
>3of1_A CAMP-dependent protein kinase regulatory subunit; cyclic nucleotide binding domain, evolution, PKA signaling, transfer; HET: CMP; 2.21A {Saccharomyces cerevisiae} Back     alignment and structure
>3shr_A CGMP-dependent protein kinase 1; cyclic nucleotide binding domains, cyclic nucleotide protein transferase, PKG; HET: CMP; 2.50A {Bos taurus} Back     alignment and structure
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa} Back     alignment and structure
>2qcs_B CAMP-dependent protein kinase type I-alpha regula subunit, CAMP-dependent protein kinase, alpha-catalytic SU; cyclic adenosine monophosphate; HET: SEP TPO ANP TAM; 2.20A {Bos taurus} PDB: 1rl3_A* 1rgs_A* 1ne6_A* 1ne4_A* Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ... Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2 Back     alignment and structure
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans} Back     alignment and structure
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A* Back     alignment and structure
>4din_B CAMP-dependent protein kinase type I-beta regulat subunit, CAMP-dependent protein kinase catalytic subunit A; isoform diversity; HET: TPO SEP ATP; 3.70A {Homo sapiens} Back     alignment and structure
>1o7f_A CAMP-dependent RAP1 guanine-nucleotide exchange factor; EPAC2, CAMP-GEF2, campb binding doamin, regulation; 2.5A {Mus musculus} SCOP: a.4.5.31 b.82.3.2 b.82.3.2 Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1 Back     alignment and structure
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli} Back     alignment and structure
>3tnp_B CAMP-dependent protein kinase type II-beta regula subunit; PKA RIIB tetrameric holoenzyme, transferase; HET: SEP TPO; 2.30A {Mus musculus} PDB: 3tnq_A* 1cx4_A* 2qvs_B* Back     alignment and structure
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2 Back     alignment and structure
>3cf6_E RAP guanine nucleotide exchange factor (GEF) 4; EPAC, rapgef4, CAMP, SP-camps, GEF, gunanine nucleotide exchange factor, G-protein, GTP-binding, nucleotide-binding; HET: SP1; 2.20A {Mus musculus} Back     alignment and structure
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A Back     alignment and structure
>2q67_A Potassium channel protein; inverted teepee, helix bundle, tetramer, central cavity, ION metal transport, membrane protein; 2.30A {Bacillus cereus} PDB: 2q68_A 2q6a_A 2q69_A 2ahy_A 2ahz_A Back     alignment and structure
>2k1e_A Water soluble analogue of potassium channel, KCSA; homotetramer, ION transport, ionic channel, membrane, transmembrane, transport; NMR {Escherichia coli} PDB: 2kb1_A Back     alignment and structure
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A* Back     alignment and structure
>4f7z_A RAP guanine nucleotide exchange factor 4; cyclic nucleotide, regulation, auto-IN CDC25 homology domain, exocytosis; 2.60A {Mus musculus} PDB: 2byv_E Back     alignment and structure
>3ouf_A Potassium channel protein; ION channel, membrane, membrane protein; 1.55A {Bacillus cereus} PDB: 3t4z_A 3tcu_A 3t1c_A 3tet_A 3t4d_A 3t2m_A 3e86_A 3e83_A 3e89_A 3e8b_A 3e8f_A 3e8g_A 3e8h_A 3k0d_A 3k0g_A 3k06_A 3k08_A 3k04_A 3k03_A Back     alignment and structure
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A Back     alignment and structure
>3ldc_A Calcium-gated potassium channel MTHK; transmembrane, ION channel, open conformation, IO transport; 1.45A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3lde_A 4hyo_A 4hz3_D 3r65_A 3ous_A 3ldd_A Back     alignment and structure
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A* Back     alignment and structure
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A Back     alignment and structure
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A Back     alignment and structure
>1xl4_A Inward rectifier potassium channel; integral membrane protein, ION channel, inwardly rectifying channel, metal transport; 2.60A {Magnetospirillum magnetotacticum} SCOP: b.1.18.16 f.14.1.1 PDB: 1xl6_A* 2wlh_A 2wli_B 2wlj_A* 2wlk_A* 2wlm_A 2wlo_A 2wln_A 3zrs_A 2wli_A 2x6c_A* 2x6b_A* 2x6a_A* Back     alignment and structure
>1p7b_A Integral membrane channel and cytosolic domains; transmembrane helices, ION conduction, immunoglobulin fold, assembly; 3.65A {Burkholderia pseudomallei} SCOP: b.1.18.16 f.14.1.1 PDB: 2wll_B* 2wll_A* Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus} Back     alignment and structure
>2qks_A KIR3.1-prokaryotic KIR channel chimera; G-protein gated inward rectifier, potassium channel selectivity filter, metal transport; HET: BNG; 2.20A {Burkholderia xenovorans} Back     alignment and structure
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3sya_A G protein-activated inward rectifier potassium CH; ION channel, potassium channel, inward rectification, sodium PIP2 binding, G protein binding; HET: PIO; 2.98A {Mus musculus} PDB: 3syo_A 3syc_A 3syp_A 3syq_A* Back     alignment and structure
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens} Back     alignment and structure
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens} Back     alignment and structure
>3spc_A Inward-rectifier K+ channel KIR2.2; PIP, membrane protein, lipid, receptor, metal transport; HET: P8P; 2.45A {Gallus gallus} PDB: 3jyc_A* 3spi_A* 3sph_A* 3spj_A 3spg_A* Back     alignment and structure
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A Back     alignment and structure
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114} Back     alignment and structure
>1ors_C Potassium channel; voltage-dependent, voltage sensor, KVAP, FAB complex, membrane protein; 1.90A {Aeropyrum pernix} SCOP: f.14.1.1 Back     alignment and structure
>2kyh_A KVAP, voltage-gated potassium channel; ION channel, membrane protein; NMR {Aeropyrum pernix} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query558
d1q3ea_193 HCN pacemaker channel {Mouse (Mus musculus) [TaxId 99.98
d1wgpa_137 Probable cyclic nucleotide-gated ion channel 6 {Th 99.81
d1ne6a1136 Regulatory subunit of Protein kinase A {Cow (Bos t 99.75
d1cx4a1136 Regulatory subunit of Protein kinase A {Rat (Rattu 99.75
d1ne6a2132 Regulatory subunit of Protein kinase A {Cow (Bos t 99.74
d1cx4a2147 Regulatory subunit of Protein kinase A {Rat (Rattu 99.74
d1o7fa2155 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.74
d1o7fa3124 Regulatory domain of Epac2, domains 1 and 3 {Mouse 99.73
d1vp6a_133 Putative ion channel CnbD {Mesorhizobium loti [Tax 99.73
d1zyba2147 Probable transcription regulator BT4300, N-termina 99.68
d2gaua2142 Transcriptional regulator PG0396, N-terminal domai 99.57
d1i5za2132 Catabolite gene activator protein, N-terminal doma 99.55
d2oz6a2134 Cyclic AMP receptor-like protein Vfr {Pseudomonas 99.52
d1ft9a2132 CO-sensing protein CooA, N-terminal domain {Rhodos 99.49
d1o5la1129 CRP-like transcriptional regulator TM1171, N-termi 99.48
d3e5ua2139 Chlorophenol reduction protein CprK {Desulfitobact 99.47
d1r3jc_103 Potassium channel protein {Streptomyces coelicolor 99.42
d2zcwa2112 Transcriptional regulator TTHA1359, N-terminal dom 99.32
d1xl4a2116 Inward rectifier potassium channel kirbac3.1 {Magn 99.31
d1p7ba2116 Inward rectifier potassium channel Kirbac1.1 {Burk 99.23
d1lnqa280 Potassium channel-related protein MthK {Archaeon M 98.88
d2h8pc157 Potassium channel protein {Streptomyces coelicolor 96.72
d1orsc_132 Potassium channel KVAP {Archaeon Aeropyrum pernix 95.9
d1yhfa1112 Hypothetical protein SPy1581 {Streptococcus pyogen 88.22
d2bgca2131 Listeriolysin regulatory protein PrfA, N-terminal 88.17
>d1q3ea_ b.82.3.2 (A:) HCN pacemaker channel {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: cAMP-binding domain-like
family: cAMP-binding domain
domain: HCN pacemaker channel
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.98  E-value=1e-31  Score=251.63  Aligned_cols=180  Identities=20%  Similarity=0.275  Sum_probs=165.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhhhcCCCHHHHHhcCCHHHHHHHHHHHHHHHhcCCcCCCCCC
Q 008660          338 TRAHKINQKLRQIKHWKHFKDISTFVRAKIREAKRENLLLKHDIHIDSLVSDLPDDTAKQVKLHFGRNLLGQMQKFENWE  417 (558)
Q Consensus       338 ~~~~~~~~~~~~i~~~m~~~~lp~~L~~rv~~y~~~~~~~~~~~~~~~~l~~Lp~~Lr~~i~~~l~~~~l~~i~~F~~~~  417 (558)
                      ++..+++++|+.+++||+.+++|++|+.||++||+|.|+. ++.+++++++.||++||.++..+++.+.++++|+|++++
T Consensus         2 s~~~~f~~~~~~i~~~m~~~~i~~~l~~rv~~y~~~~~~~-~~~~~~~i~~~lp~~l~~~i~~~~~~~~l~~~~~F~~~~   80 (193)
T d1q3ea_           2 SSRRQYQEKYKQVEQYMSFHKLPADFRQKIHDYYEHRYQG-KMFDEDSILGELNGPLREEIVNFNCRKLVASMPLFANAD   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHSCHHHHHHHHHHHTHHHHHHCHHHHTSC
T ss_pred             hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhhc-ccccHHHHHHHCCcchhHHHHHHHHHHHHhcchHHHhhh
Confidence            4567899999999999999999999999999999999975 677899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCeeEEeCCCCEEEccCCccceEEEEEEeEEEEEEcCceEEEEEecCCCeeehhhhhhhhccCCCCCCCCc
Q 008660          418 DYSLDHLCGCLKPVFFSERTTIISEGESIHEMLFVLEGQISIYSKSKLIGLKRQEDGNYCGEEIIDWAENQSSSHGHLPI  497 (558)
Q Consensus       418 ~~~l~~L~~~l~~~~y~~ge~I~~~G~~~~~myfI~~G~v~v~~~~~~~~~~~l~~G~~fGe~~l~~~l~~~~~~~~~~~  497 (558)
                      +.++.+|+..|++..|.|||+|+++||.++++|||.+|.|++..+++.  ...+++|++|||.++.  .+.+        
T Consensus        81 ~~~l~~l~~~~~~~~~~~g~~I~~~g~~~~~ly~i~~G~v~v~~~~~~--~~~l~~G~~fGe~~~~--~~~~--------  148 (193)
T d1q3ea_          81 PNFVTAMLTKLKFEVFQPGDYIIREGTIGKKMYFIQHGVVSVLTKGNK--EMKLSDGSYFGEICLL--TRGR--------  148 (193)
T ss_dssp             HHHHHHHHTTCEEEEECTTCEEECTTSBCCEEEEEEECCEEEEC-CCC--EEEECTTCEECHHHHH--HCSB--------
T ss_pred             HHHHHHHHHHHHHHhhccCceecccCCCCcceeEeeeeeEEeecCCcc--eeeeccceeeeeeecc--CCCc--------
Confidence            999999999999999999999999999999999999999998776553  5689999999998774  2332        


Q ss_pred             cccEEEEeceEEEEEEcHHHHHHHHHHhHhhhh
Q 008660          498 STRTIIAHTNVEGFTLKTDELKHGIALHRRFNQ  530 (558)
Q Consensus       498 r~~tv~A~~~~~l~~L~~~~f~~ll~~~p~~~~  530 (558)
                      ++++++|.++|+++.|++++|.+++++||++.+
T Consensus       149 ~~~~~~a~~~~~l~~l~~~~f~~ll~~~p~~~~  181 (193)
T d1q3ea_         149 RTASVRADTYCRLYSLSVDNFNEVLEEYPMMRR  181 (193)
T ss_dssp             CSSEEEESSCEEEEEEEHHHHHHHHHHSGGGHH
T ss_pred             ccccceecCceEEEEEeHHHHHHHHHHCHHHHH
Confidence            889999999999999999999999999999854
>d1wgpa_ b.82.3.2 (A:) Probable cyclic nucleotide-gated ion channel 6 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1ne6a1 b.82.3.2 (A:109-244) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a1 b.82.3.2 (A:130-265) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1ne6a2 b.82.3.2 (A:245-376) Regulatory subunit of Protein kinase A {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1cx4a2 b.82.3.2 (A:266-412) Regulatory subunit of Protein kinase A {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1o7fa2 b.82.3.2 (A:13-167) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1o7fa3 b.82.3.2 (A:322-445) Regulatory domain of Epac2, domains 1 and 3 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1vp6a_ b.82.3.2 (A:) Putative ion channel CnbD {Mesorhizobium loti [TaxId: 381]} Back     information, alignment and structure
>d1zyba2 b.82.3.2 (A:1-147) Probable transcription regulator BT4300, N-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2gaua2 b.82.3.2 (A:10-151) Transcriptional regulator PG0396, N-terminal domain {Porphyromonas gingivalis [TaxId: 837]} Back     information, alignment and structure
>d1i5za2 b.82.3.2 (A:6-137) Catabolite gene activator protein, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2oz6a2 b.82.3.2 (A:9-142) Cyclic AMP receptor-like protein Vfr {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ft9a2 b.82.3.1 (A:2-133) CO-sensing protein CooA, N-terminal domain {Rhodospirillum rubrum [TaxId: 1085]} Back     information, alignment and structure
>d1o5la1 b.82.3.2 (A:1-129) CRP-like transcriptional regulator TM1171, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3e5ua2 b.82.3.2 (A:9-147) Chlorophenol reduction protein CprK {Desulfitobacterium hafniense [TaxId: 49338]} Back     information, alignment and structure
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1xl4a2 f.14.1.1 (A:23-138) Inward rectifier potassium channel kirbac3.1 {Magnetospirillum magnetotacticum [TaxId: 188]} Back     information, alignment and structure
>d1p7ba2 f.14.1.1 (A:36-151) Inward rectifier potassium channel Kirbac1.1 {Burkholderia pseudomallei [TaxId: 28450]} Back     information, alignment and structure
>d1lnqa2 f.14.1.1 (A:19-98) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} Back     information, alignment and structure
>d2h8pc1 f.14.1.1 (C:22-78) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]} Back     information, alignment and structure
>d1orsc_ f.14.1.1 (C:) Potassium channel KVAP {Archaeon Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d1yhfa1 b.82.1.9 (A:1-112) Hypothetical protein SPy1581 {Streptococcus pyogenes [TaxId: 1314]} Back     information, alignment and structure
>d2bgca2 b.82.3.3 (A:7-137) Listeriolysin regulatory protein PrfA, N-terminal domain {Bacteria (Listeria monocytogenes) [TaxId: 1639]} Back     information, alignment and structure