Citrus Sinensis ID: 008661

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------56
Protein Sequence
MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKNSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGDLKGAEDINRGAETDVS
Secondary Structure (PSIPRED)
ccEEccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccEEEEEEEEEEcccccccccccccccEEEEEEccEEEEEcccccccccccccEEEEEEcccccccEEEEEEEEcccccccccEEEEEEcccccccccccEEEEccccccEEEEEEEEEEEcccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccccEEEccccccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccHHccccccccEEEEcccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHccccccHHHHHHHHHHHHHHHccccccEEEEcccccccccccEEEEcccccccEEEEEEEEcccccccccccccccEEEEEEccccEEcEEEcccccccccEEEEEEEEccccccEEEEEEEccccccccccEEEEEEHHHHcccccccEEEEcccccccEEEEEEEEEcccccccccccccHHHHHHHHccccccccccccccccccHEEEEcccHccccHHccccccccEEEEEEcccEEEEEEEEccccccccccccccccccccEEEEEccccccccccEccHHHHHccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccEEEEEccccccccccccccEEEEcHHccccccccccccccccHHHHcccccHHccccccHHHHHcccccccc
Coil and Loop (DISEMBL)
mtvkpifthgldvtefpgiAGWLDKLLSIAFEQtlvepnmlvvdvdkfaspqpgnwfsvdvkePVAYARVEVveasdmkpsdlngladpyvkgqlgpyrfrtktqrktlspkwheefnipistwdspnvlvievrdkdhfvddtlgdctinisdlrdgqrhdmwiplqnikigRLHLAITVLEEsakqgvdspcdggtlnkegmgnkedqsnkeDIRESFanettdkgsfssvssekspkvadnfepiniegqqetgiwvhqpgsevaqtweprkgknrrlDTLVrrvpngsfnstnsaasgslnndssstddnqegkNSIRRGLRKIGSMfqrnsrkedhagsigeavpspranlravntkdvGVKFIVEdslsgsipvkatkdinvssdesgpespsrghvkGMAKSIMKHAEKHARSIKHAfsrkdstkrrggtspvterelyvdsdssddeslpssrleripdfpipmsscstrddncdtkeqitrtsssdpeadilgqtdkvsadseekkdddevnktegvddgqiefikpelsegdlkgaedinrgaetdvs
Flexible Loop (DISEMBL)
mtvkpifthgldvtefpGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFAspqpgnwfsvdvKEPVAYARVEVVeasdmkpsdlngladpyvkgqlgpyrfrtktqrktlspkwheefnipistwdspnVLVIEVRDKdhfvddtlgdCTINIsdlrdgqrhDMWIPLQNIKIGRLHLAITVLEEsakqgvdspcdggtlnkegmgnkedqsnkEDIRESFAnettdkgsfssvssekspkvADNFEPINIEGQQETGIWVHQPGsevaqtweprkgknrrldtlvrrvpngsfnstnsaasgslnndssstddnqegknsirrglRKIGSMfqrnsrkedhagsigeavpspranlravntKDVGVKFIvedslsgsipvkatkdinvssdesgpespsrghVKGMAKSIMKHAEKHARSikhafsrkdstkrrggtspvterelyvdsdssddeslpssrleripdfpipmsscstrddncDTKEQitrtsssdpeadilgqtdkvsadseekkdddevnktegvddgqiefikpelsegdlkgaedinrgaetdvs
Low Complexity Region (SEG)
MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGsfssvsseksPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTnsaasgslnndssstddnQEGKNSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSPVTERELYVdsdssddeslpssRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSDPEADILGQTdkvsadseekkdddevNKTEGVDDGQIEFIKPELSEGDLKGAEDINRGAETDVS
Disordered region (IsUnstruct)
****PIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEA*******LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE************************************************************************TGIWVH*************************************************************************************************VNTKDVGVKFIVED******************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASP*PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESA************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMG*********DIRESFAN*******************ADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNS*********************SIRRGLRKIGSMFQ************GEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIPVKATKDI******************GMAK***********SIKHAF***************TERE****************RLERIPDFPIPMSSC********************PEADILGQT******************TEGVDDGQIEFIKPELSEGDLKGAEDINRGAETDVS
Disordered Region (DISPRO)
*TVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGN**********RESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQ*GKNSIRRGLRKIGSMFQR***************************************************************************************************************************************************C*TKEQITRTSSSDPEADILGQTDKVSADSE**********************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDSSSTDDNQEGKNSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKHARSIKHAFSRKDSTKRRGGTSPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCSTRDDNCDTKEQITRTSSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKPELSEGDLKGAEDINRGAETDVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	558	2.2.26 [Sep-21-2011]
Q93XX4	751	C2 domain-containing prot	no	no	0.736	0.547	0.618	1e-149
Q9ZVT9	1020	C2 and GRAM domain-contai	no	no	0.184	0.100	0.403	3e-13
Q6DN14	999	Multiple C2 and transmemb	yes	no	0.249	0.139	0.311	3e-11
Q9UT00	1225	Uncharacterized protein P	yes	no	0.232	0.106	0.350	8e-11
Q5M7N9	889	Extended synaptotagmin-3	no	no	0.318	0.200	0.257	9e-11
Q5DTI8	891	Extended synaptotagmin-3	no	no	0.293	0.184	0.306	2e-10
A0FGR9	886	Extended synaptotagmin-3	no	no	0.320	0.202	0.298	2e-10
Q8L706	560	Synaptotagmin-5 OS=Arabid	no	no	0.399	0.398	0.226	5e-09
Q5RJH2	878	Multiple C2 and transmemb	no	no	0.173	0.110	0.386	2e-08
A0FGR8	921	Extended synaptotagmin-2	no	no	0.295	0.179	0.293	2e-08

>sp|Q93XX4|C2D61_ARATH C2 domain-containing protein At1g53590 OS=Arabidopsis thaliana GN=NTMC2T6.1 PE=1 SV=2

 Score =  528 bits (1359), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 277/448 (61%), Positives = 334/448 (74%), Gaps = 37/448 (8%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
           MTVKPIFTHGLDV   PGIAGWLDKLLSIAFEQTLV+PNMLVVD++KF SP   NWF VD
Sbjct: 217 MTVKPIFTHGLDVAVLPGIAGWLDKLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVD 276

Query: 61  VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
            KEPVA+  VEV EASD+KPSDLNGLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IP
Sbjct: 277 EKEPVAHVLVEVFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIP 336

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
           I TWDSP++L IEV DKD FVDDTLG+C++NI + R GQR+DMW+ LQNIK+GRLHLAIT
Sbjct: 337 IFTWDSPSILNIEVGDKDRFVDDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAIT 396

Query: 181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPK 240
           V+E++AK   D P             K+ + NKEDI+ SFA++TT+ GSF   SS+KSP 
Sbjct: 397 VIEDNAKSS-DDPL------------KKAKLNKEDIQTSFASDTTNLGSF---SSDKSPS 440

Query: 241 VADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAA 300
           V DNFEPI I+GQ+ET IWV +PG+EV+Q WEPRKGK+RRLD+ ++R PN          
Sbjct: 441 VVDNFEPIKIDGQEETAIWVQKPGAEVSQIWEPRKGKSRRLDSQIQRTPNDE-------- 492

Query: 301 SGSLNNDSSSTDDNQEG-KN---SIRRGLRKIGSMFQRNSRKEDHA-GSIGE--AVPSPR 353
             SL+N SSSTDDNQEG KN   S+ RGLRKIGSMF RN +KE+   GSI E     SPR
Sbjct: 493 --SLSNGSSSTDDNQEGSKNPMKSVGRGLRKIGSMFHRNVKKEEFLIGSIEEESQSQSPR 550

Query: 354 ANLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKH 413
            NL+AVN KDVG+ FIV+D+LSG +  K+    ++ ++E+      +GH+K +AKS +K 
Sbjct: 551 INLKAVNQKDVGLNFIVDDNLSGPLSGKSLDGESLDAEENS----GKGHMKDVAKSFLKQ 606

Query: 414 AEKHARSIKHAFSRKDSTKRRGGTSPVT 441
           AEK A+ IKHAFSRK S K R G   + 
Sbjct: 607 AEKSAKQIKHAFSRKGSMKPRDGHKEIV 634

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZVT9|C2GR1_ARATH C2 and GRAM domain-containing protein At1g03370 OS=Arabidopsis thaliana GN=At1g03370 PE=2 SV=4

 Score = 77.4 bits (189), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/109 (40%), Positives = 65/109 (59%), Gaps = 6/109 (5%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 128
           +V VVEA ++   DLNG +DPYV+ QLG  R RTK  +K L+PKW E+F+  +   D  +
Sbjct: 4   QVRVVEARNLPAMDLNGFSDPYVRLQLGKQRSRTKVVKKNLNPKWTEDFSFGVD--DLND 61

Query: 129 VLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDM---WIPLQNIKIG 173
            LV+ V D+D +F DD +G   +++S + D +   +   W PL   K G
Sbjct: 62  ELVVSVLDEDKYFNDDFVGQVRVSVSLVFDAENQSLGTVWYPLNPKKKG 110

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DN14|MCTP1_HUMAN Multiple C2 and transmembrane domain-containing protein 1 OS=Homo sapiens GN=MCTP1 PE=2 SV=2

 Score = 70.5 bits (171), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 83/154 (53%), Gaps = 15/154 (9%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
           + ++E  D+K  D NGL+DPYVK +LG  ++++K   KTL+P+W E+F+  +   +   V
Sbjct: 474 ITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYE-ERGGV 532

Query: 130 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV-LEESAK 187
           + I   DKD    DD +G C +++S L   Q H + + L+    G  HL + V L  SA 
Sbjct: 533 IDITAWDKDAGKRDDFIGRCQVDLSALSREQTHKLELQLEE---GEGHLVLLVTLTASAT 589

Query: 188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFA 221
                     +++   + + EDQ  +E+I + ++
Sbjct: 590 V---------SISDLSVNSLEDQKEREEILKRYS 614

Homo sapiens (taxid: 9606)

>sp|Q9UT00|YKH3_SCHPO Uncharacterized protein PYUK71.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAPYUK71.03c PE=1 SV=1

 Score = 69.3 bits (168), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 47/134 (35%), Positives = 76/134 (56%), Gaps = 4/134 (2%)

Query: 50   SPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKT 108
            +P P     V++ E +    V+V++A+D+  +D NG +DP+V  +L G   +RTKT ++T
Sbjct: 1021 TPVPVKLEEVEMYENMGEMTVDVIKATDLPAADSNGKSDPFVVFELQGEEVYRTKTHKRT 1080

Query: 109  LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPL 167
            L+P ++E F + +    + N  V  V D D    DD LG C I+   L+  Q+ +  IPL
Sbjct: 1081 LNPTFNESFEVELPCKQTCN-FVANVFDWDFGNKDDHLGSCVIDCKLLQQQQQTNYEIPL 1139

Query: 168  QNIKIGRLHLAITV 181
             + K G L+L IT+
Sbjct: 1140 DS-KQGVLYLRITL 1152

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q5M7N9|ESYT3_XENTR Extended synaptotagmin-3 OS=Xenopus tropicalis GN=esyt3 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 90/194 (46%), Gaps = 16/194 (8%)

Query: 12  DVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYA--R 69
           +V E PG++ + D ++       LV PN       +F  P      +  ++ P+ +   R
Sbjct: 299 NVLEIPGVSDFSDSMIVDMIASHLVLPN-------RFTVPLSSQVQAAQLRFPLPHGVLR 351

Query: 70  VEVVEASDMKPSD------LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST 123
           + ++EA D+ P D      + G +DPY   ++G   F+++T ++ L+PKW E +   +  
Sbjct: 352 LHLIEAEDLIPKDNYLKGIIRGKSDPYAVLRIGNQNFKSRTIKENLNPKWGEMYEFVVHE 411

Query: 124 WDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 183
               + L +++ D+D   DD LG   I +  +   +  D W PL ++  G +HL +  L 
Sbjct: 412 VPGQD-LEVDLYDEDPDKDDFLGSLVIGLEGVMQDRVVDEWFPLSDVPSGSVHLRLEWLS 470

Query: 184 ESAKQGVDSPCDGG 197
              K    S   GG
Sbjct: 471 LLPKSEKLSEAKGG 484

May play a role as calcium-regulated intrinsic membrane protein.

Xenopus tropicalis (taxid: 8364)

>sp|Q5DTI8|ESYT3_MOUSE Extended synaptotagmin-3 OS=Mus musculus GN=Esyt3 PE=2 SV=2

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/176 (30%), Positives = 81/176 (46%), Gaps = 12/176 (6%)

Query: 12  DVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVE 71
           ++ + PGI    D LL       LV PN + V V K          ++ V  P    RV 
Sbjct: 261 NLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVT-----NLRVPLPCGVIRVH 315

Query: 72  VVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 127
           ++EA  +   D    L G +DPY K  +G    R++T  K L+P W+E F   +  ++ P
Sbjct: 316 LLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMV--YEVP 373

Query: 128 NV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 182
              L +++ D+D   DD LG   I + D+   +  D W  L +   GRLHL +  L
Sbjct: 374 GQDLEVDLYDEDTDKDDFLGSLQICLGDVMKNRVVDEWFALNDTTSGRLHLRLEWL 429

May play a role as calcium-regulated intrinsic membrane protein.

Mus musculus (taxid: 10090)

>sp|A0FGR9|ESYT3_HUMAN Extended synaptotagmin-3 OS=Homo sapiens GN=ESYT3 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 57/191 (29%), Positives = 87/191 (45%), Gaps = 12/191 (6%)

Query: 12  DVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVE 71
           ++ + PGI    D LL       LV PN + V V K       +  ++    P    RV 
Sbjct: 257 NLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGL-----DLTNLRFPLPCGVIRVH 311

Query: 72  VVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 127
           ++EA  +   D    L G +DPY K  +G   FR++T  + L+P W+E F   +  ++ P
Sbjct: 312 LLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFRSRTIYRNLNPTWNEVFEFMV--YEVP 369

Query: 128 NV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESA 186
              L +++ D+D   DD LG   I + D+   +  D W  L +   GRLHL +  L    
Sbjct: 370 GQDLEVDLYDEDTDRDDFLGSLQICLGDVMTNRVVDEWFVLNDTTSGRLHLRLEWLSLLT 429

Query: 187 KQGVDSPCDGG 197
            Q V +   GG
Sbjct: 430 DQEVLTEDHGG 440

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

>sp|Q8L706|SYT5_ARATH Synaptotagmin-5 OS=Arabidopsis thaliana GN=SYT5 PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 117/243 (48%), Gaps = 20/243 (8%)

Query: 10  GLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYAR 69
           G D++  PG++  +++ +  A E ++  P      V K     PG++  +++K PV    
Sbjct: 213 GGDISAIPGLSEAIEETIRDAVEDSITWP------VRKVIPIIPGDYSDLELK-PVGMLE 265

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKT---LSPKWHEEFNIPISTWDS 126
           V++V+A ++   DL G +DP+ K  + P R +TK  +     L+P W+E F   +    +
Sbjct: 266 VKLVQAKNLTNKDLVGKSDPFAKMFIRPLREKTKRSKTINNDLNPIWNEHFEFVVEDAST 325

Query: 127 PNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL-QNIKI-------GRLHLA 178
            +++V    D+     + +G   I + +L  G+  D+W+ L ++++I       G +HL 
Sbjct: 326 QHLVVRIYDDEGVQASELIGCAQIRLCELEPGKVKDVWLKLVKDLEIQRDTKNRGEVHLE 385

Query: 179 ITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKG--SFSSVSSE 236
           +  +   +  G+ +P    ++       K D +++E+       +   +G  S + +S+E
Sbjct: 386 LLYIPYGSGNGIVNPFVTSSMTSLERVLKNDTTDEENASSRKRKDVIVRGVLSVTVISAE 445

Query: 237 KSP 239
           + P
Sbjct: 446 EIP 448

May be involved in membrane trafficking.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5RJH2|MCTP2_MOUSE Multiple C2 and transmembrane domain-containing protein 2 OS=Mus musculus GN=Mctp2 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 60/101 (59%), Gaps = 4/101 (3%)

Query: 60  DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
           DVK+ V   +V+V++ASD+  +D +G +DP+   +LG  R +T T  K L+P+W++ F  
Sbjct: 504 DVKD-VGILQVKVLKASDLLAADFSGKSDPFCLLELGNDRLQTHTIYKNLNPEWNKVFTF 562

Query: 120 PISTWDSPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQ 159
           PI   D  +VL + V D+D     D LG   I +  +RDGQ
Sbjct: 563 PIK--DIHDVLEVTVFDEDGDKAPDFLGKVAIPLLSIRDGQ 601

Mus musculus (taxid: 10090)

>sp|A0FGR8|ESYT2_HUMAN Extended synaptotagmin-2 OS=Homo sapiens GN=ESYT2 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 88/184 (47%), Gaps = 19/184 (10%)

Query: 7   FTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVD-VDKFASPQPGNWFSVDVKEPV 65
            T+ LDV   PG+ G  D ++       LV PN + V  V +    Q      +    P 
Sbjct: 334 LTNLLDV---PGLNGLSDTIILDIISNYLVLPNRITVPLVSEVQIAQ------LRFPVPK 384

Query: 66  AYARVEVVEASDMKPSD--LNGL----ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
              R+  +EA D++  D  L GL    +DPY   ++G   F+++  ++ LSPKW+E +  
Sbjct: 385 GVLRIHFIEAQDLQGKDTYLKGLVKGKSDPYGIIRVGNQIFQSRVIKENLSPKWNEVYEA 444

Query: 120 PISTWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 178
            +  ++ P   L IE+ D+D   DD LG   I++ ++   +  D W  L  +  G+LHL 
Sbjct: 445 LV--YEHPGQELEIELFDEDPDKDDFLGSLMIDLIEVEKERLLDEWFTLDEVPKGKLHLR 502

Query: 179 ITVL 182
           +  L
Sbjct: 503 LEWL 506

May play a role as calcium-regulated intrinsic membrane protein.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
255578544	765	conserved hypothetical protein [Ricinus	0.949	0.692	0.625	0.0
224061351	729	integral membrane single C2 domain prote	0.862	0.659	0.599	1e-159
359494388	771	PREDICTED: C2 domain-containing protein	0.930	0.673	0.573	1e-159
297834336	742	integral membrane single C2 domain prote	0.842	0.633	0.603	1e-159
147778709	771	hypothetical protein VITISV_028262 [Viti	0.930	0.673	0.576	1e-157
356549572	766	PREDICTED: C2 domain-containing protein	0.797	0.580	0.615	1e-154
356549574	757	PREDICTED: C2 domain-containing protein	0.779	0.574	0.605	1e-152
9294381	660	unnamed protein product [Arabidopsis tha	0.777	0.657	0.617	1e-150
186510060	737	calcium-dependent lipid-binding domain-c	0.777	0.588	0.617	1e-150
334185353	706	calcium-dependent lipid-binding domain-c	0.777	0.614	0.617	1e-150

>gi|255578544|ref|XP_002530135.1| conserved hypothetical protein [Ricinus communis] gi|223530360|gb|EEF32251.1| conserved hypothetical protein [Ricinus communis]

 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 343/548 (62%), Positives = 424/548 (77%), Gaps = 18/548 (3%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
           MTVKP+FTHGLDVTE PGIAGWLDKLLS+AFEQTLV+PNMLVVD++KFASP+P NWFSVD
Sbjct: 220 MTVKPVFTHGLDVTELPGIAGWLDKLLSVAFEQTLVQPNMLVVDMEKFASPKPENWFSVD 279

Query: 61  VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
            KEP+AY +VEV+EA+DMKPSDLNGLADPYVKGQLG Y+FRTK QRKTL+PKW EEF IP
Sbjct: 280 EKEPIAYVKVEVMEATDMKPSDLNGLADPYVKGQLGSYKFRTKIQRKTLAPKWQEEFKIP 339

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
           I TWDSPNVLVIEVRDKDHFVDD+LGDC INI+DLRDG RHDMW+PLQNIKIGRLHLAIT
Sbjct: 340 ICTWDSPNVLVIEVRDKDHFVDDSLGDCIININDLRDGGRHDMWLPLQNIKIGRLHLAIT 399

Query: 181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSF-SSVSSEKSP 239
           VLEE+AK G +   DG TL+KE M            ++SF NET ++ SF SS +S+KSP
Sbjct: 400 VLEENAKVGANI-FDGDTLSKEEM------------QDSFINETANRASFSSSTASDKSP 446

Query: 240 KVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSA 299
           +V DN EPINIEGQ++TGIWVHQPG+EV+QTWEPRKGK+ RLD+  RRVP  SF S+N  
Sbjct: 447 RVIDNLEPINIEGQEQTGIWVHQPGNEVSQTWEPRKGKSMRLDSRARRVPGDSFGSSNLP 506

Query: 300 ASGSLNNDSSSTDDNQEGK---NSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANL 356
            SG LNNDSSS+D+N +GK   N ++RGLRKI S+F R S+KED  GS  +AV SP AN+
Sbjct: 507 VSGPLNNDSSSSDENVDGKSSMNRVQRGLRKISSVFHRGSKKEDSMGSNEDAVQSPYANI 566

Query: 357 RAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEK 416
           +AVN K++GV F+VEDSLSGS  VK +  +N+S D   PE+P +G+VK  AKSI+KHAEK
Sbjct: 567 KAVNQKEIGVTFVVEDSLSGSTVVKNSNAVNLSPDGIAPETPGKGNVKDRAKSILKHAEK 626

Query: 417 HARSIKHAFSRKDSTKRRGGTSPVTERELYVDSDSSDDESLPSSRLERIPDFPIPMSSCS 476
            ARSI+H  SRK S K RG +S VTE E+Y +S+SSDDE L SS++E+IP    P ++  
Sbjct: 627 SARSIRHVLSRKGSRKSRGDSSVVTELEIYPESESSDDEELSSSQVEKIPIVSCPTTNTC 686

Query: 477 TRDDNCDTKEQITRTSSSDPEADILGQTDKVSADSEEKKDDDEVNKTEGVDDGQIEFIKP 536
             DD    ++ + +  S +   D  GQ +KV+ ++ E  D+++V+   G ++ + EF KP
Sbjct: 687 GNDDADKVEDNVVQVDSVELVTDTEGQMNKVNVEALESGDENKVSSFSGGNELE-EFSKP 745

Query: 537 ELSEGDLK 544
           +LS+  L+
Sbjct: 746 QLSDEKLE 753

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061351|ref|XP_002300437.1| integral membrane single C2 domain protein [Populus trichocarpa] gi|222847695|gb|EEE85242.1| integral membrane single C2 domain protein [Populus trichocarpa]

 Score =  568 bits (1464), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 311/519 (59%), Positives = 380/519 (73%), Gaps = 38/519 (7%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
           MTVKPIF  GLDVTE PGIAGWLDKLLS+AFEQTLV+PNMLVVD++KF SP   +WFSVD
Sbjct: 214 MTVKPIFATGLDVTELPGIAGWLDKLLSVAFEQTLVQPNMLVVDMEKFVSPGSEDWFSVD 273

Query: 61  VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
            KEPVAYA+VEV+EASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF IP
Sbjct: 274 EKEPVAYAKVEVIEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFKIP 333

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
           I TW+ PNVL I+VRDKD   DD LG CT++I++L+D  RHDMW+PLQNIK+GRLHLAIT
Sbjct: 334 ICTWELPNVLAIDVRDKDPLFDDALGVCTVDINELKDLGRHDMWLPLQNIKMGRLHLAIT 393

Query: 181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPK 240
           VLE++A+ G  SP DG TL             KE I++SF ++T ++ SFSS S+EKS +
Sbjct: 394 VLEQNAQGGDCSP-DGDTL------------TKEQIQDSFVSDTANRASFSSESTEKS-R 439

Query: 241 VADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAA 300
           V DNFEPIN+EGQ+ETGIWVH PGSEV QTWEPRKGK              SF S +SA 
Sbjct: 440 VPDNFEPINVEGQEETGIWVHHPGSEVPQTWEPRKGKT-----------TNSFIS-HSAV 487

Query: 301 SGSLNNDSSSTDDNQEGKNS---IRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLR 357
           SG LN DSSS ++N EG+N     +RGL+KIGS+F RN++ ED+  SIGE VPSP  N++
Sbjct: 488 SGPLNIDSSSGEENAEGENKRKRFKRGLQKIGSVFHRNAKNEDNLSSIGENVPSPYVNIK 547

Query: 358 AVNTKDVGVKFIVEDSLSGSIP-VKATKDINVSSDESGPESPS-----RGHVKGMAKSIM 411
           A N +++GVKF+VEDSL  S+P      ++N+ S++S PESP       G+ KG+AKSI+
Sbjct: 548 ATNQREIGVKFVVEDSL--SVPNSGCLSEVNLGSEKSSPESPQGGNAKGGNAKGIAKSIL 605

Query: 412 KHAEKHARSIKHAFSRKDSTKRRGGTSPVTERELYVDSDSSDDESLPSSRLERIPDFPIP 471
           KHAEK ARSIKHA SR  S++     S VTER++Y +SDSSDD+S  S + + +   PIP
Sbjct: 606 KHAEKSARSIKHALSRTGSSRSLADPSVVTERDIYPESDSSDDQSRSSPQTKPVVSSPIP 665

Query: 472 MSSCSTRDDNCDTKEQITRTSSSDPEADILGQTDKVSAD 510
            SS    DD+    E I  +  S+P  +  GQ +KV  +
Sbjct: 666 -SSTPCNDDSVKPMENIIESGPSEPSINSGGQMNKVDVE 703

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359494388|ref|XP_002267637.2| PREDICTED: C2 domain-containing protein At1g53590-like [Vitis vinifera]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/541 (57%), Positives = 388/541 (71%), Gaps = 22/541 (4%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
           MTVKPIFTHGLDVTE PGIAGWLDKLL++AFEQTLVEPNMLVVDV+KF SP   +WFSVD
Sbjct: 220 MTVKPIFTHGLDVTELPGIAGWLDKLLAVAFEQTLVEPNMLVVDVEKFVSPNKEDWFSVD 279

Query: 61  VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
            KEP+A ARVEV+EASDMKPSDLNGLADPYVKG+LGPYRF TK Q+KTL+PKW+EEF IP
Sbjct: 280 EKEPIALARVEVLEASDMKPSDLNGLADPYVKGKLGPYRFTTKIQKKTLTPKWNEEFKIP 339

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
           I +W+ PN+LVIEVRDKDHFVDDTLG C++NI+DLR GQRHDMW+PL+NIK+GRLHLAIT
Sbjct: 340 ICSWELPNMLVIEVRDKDHFVDDTLGACSLNINDLRGGQRHDMWLPLKNIKMGRLHLAIT 399

Query: 181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPK 240
           VLE++ ++  D   D   L+ + +   E+  ++ED R S A ET+ + SFSS +SE++ K
Sbjct: 400 VLEDNEEEA-DQLDDEEILDHKTL--DEEDKDQEDKRNSLARETSLRDSFSS-ASERTSK 455

Query: 241 VADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAA 300
           VAD +EPIN+EGQQETGIWVH PGSEV+QTWEPRKGK+R +D+ +    N SF S NS A
Sbjct: 456 VADKYEPINLEGQQETGIWVHHPGSEVSQTWEPRKGKSRHIDSQITGEGNDSFRSPNSIA 515

Query: 301 SGSLNNDSSSTDDNQEGK-----NSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRAN 355
            GS +ND SSTD+N EGK     N++RRGL KIG++F RN RKED++ +IGE +PSP +N
Sbjct: 516 YGSFHNDGSSTDENSEGKKAQAMNTVRRGLEKIGTVFHRN-RKEDNSSNIGEIIPSPPSN 574

Query: 356 LRAVNTKDVGVKFIVEDSLSGSIPVKATK-DINVSSDESGPESPSRGHVKGMAKSIMKHA 414
           ++ VN+K +GV+FIVED+LS     +  K D +   + SG ESPS+G+VK MAK  +K A
Sbjct: 575 IKEVNSKAIGVRFIVEDNLSKPSSAEVPKEDRSPGHEGSGTESPSQGNVKDMAKCFLKQA 634

Query: 415 EKHARSIKHAFSRKDSTKRRGGTS-PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMS 473
            K AR IKHA SRK S K +G    PV         + S   S+ +S +E IP    P+S
Sbjct: 635 GKSARGIKHALSRKGSRKSQGDQEIPV----FDSSDEDSASSSVCTSTMEAIPIISTPIS 690

Query: 474 SCSTRDDNCDTKEQITRTSSSDPEADILGQTDKVSADSE--EKKDDDEVNKTEGVDDGQI 531
           S    +D    KEQ+    +  P A I     +   D E  E   D+  + +EG  D  +
Sbjct: 691 SHG--NDPVAHKEQVVLIGA--PAASIEEPVSETKVDDEGREGMGDNIASSSEGNGDELV 746

Query: 532 E 532
           E
Sbjct: 747 E 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834336|ref|XP_002885050.1| integral membrane single C2 domain protein [Arabidopsis lyrata subsp. lyrata] gi|297330890|gb|EFH61309.1| integral membrane single C2 domain protein [Arabidopsis lyrata subsp. lyrata]

 Score =  567 bits (1460), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 310/514 (60%), Positives = 373/514 (72%), Gaps = 44/514 (8%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSV 59
           MTVKPI THGLDV   PGIAGWLDKLLS+AFEQTLVEPNMLVVD++KF SP+PG NWF V
Sbjct: 217 MTVKPITTHGLDVAALPGIAGWLDKLLSVAFEQTLVEPNMLVVDMEKFVSPEPGENWFFV 276

Query: 60  DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
           D KEPVA+A VEVVEASD+KPSDLNGLADPYVKGQLG YRF+TK   KTL+PKW EEF I
Sbjct: 277 DEKEPVAHALVEVVEASDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKI 336

Query: 120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 179
           PI TWDSPN+L IEV+DKD F DD+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAI
Sbjct: 337 PICTWDSPNILNIEVQDKDRFTDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAI 396

Query: 180 TVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSP 239
           TVLE  AK   D P +G T+            +KED+  SFA++ T KGSFSSV S+KSP
Sbjct: 397 TVLENEAKLN-DDPFEGVTI------------SKEDMWASFASDVTSKGSFSSVVSDKSP 443

Query: 240 KVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSA 299
           +V DN EPINIEGQ+ETGIWVHQPG+EV+Q WEPRKGKNR LD  +R        S  S 
Sbjct: 444 RVPDNMEPINIEGQEETGIWVHQPGTEVSQIWEPRKGKNRCLDNEIR-----GAGSVRST 498

Query: 300 ASGSLNNDSSSTDDNQEGKNSIR---RGLRKIGSMFQRNSRKED--HAGSIGEAVPSPRA 354
           AS S NN+SSSTD+NQEGK++++   RGL+KIG +F RN +KE+  H GSI E + SPR 
Sbjct: 499 ASTSPNNESSSTDENQEGKSTMKSVGRGLKKIGLVFHRNGKKEECHHTGSIEEDIRSPRI 558

Query: 355 NLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHA 414
           NL+A+N KDVGVKFIVED LSG +  ++ K  N  S+    +S  +GH+K +AKSI+KHA
Sbjct: 559 NLKALNQKDVGVKFIVEDRLSGPLTGRSPKGENFGSE----DSQHKGHMKDVAKSILKHA 614

Query: 415 EKHARSIKHAFSRKDSTKRRGG-TSPVTERELYVDSDSSDDESLPSSRLERIPDFPIP-- 471
           EK AR +KHAFSRK S K R    S V+E++     ++SDDES  SS    + D   P  
Sbjct: 615 EKSARHLKHAFSRKGSRKSRDDECSTVSEQDSECQHENSDDESAFSS----VQDLGTPRT 670

Query: 472 --MSSCSTR---DDNCDTKEQITRTSSSDPEADI 500
             +   S R   DDN +T    +  S  D +ADI
Sbjct: 671 AKLEGKSVRAGEDDNVNT----SANSKDDSKADI 700

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147778709|emb|CAN60668.1| hypothetical protein VITISV_028262 [Vitis vinifera]

 Score =  560 bits (1444), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 312/541 (57%), Positives = 386/541 (71%), Gaps = 22/541 (4%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
           MTVKPIFTHGLDVTE PGIAGWLDKLL++AFEQTLVEPNMLVVDV+KF SP   +WFSVD
Sbjct: 220 MTVKPIFTHGLDVTELPGIAGWLDKLLAVAFEQTLVEPNMLVVDVEKFVSPNKEDWFSVD 279

Query: 61  VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
            KEP+A ARVEV+EASDMKPSDLNGLADPYVKG+LGPYRF TK Q+KTL+PKW+EEF IP
Sbjct: 280 EKEPIALARVEVLEASDMKPSDLNGLADPYVKGKLGPYRFTTKIQKKTLTPKWNEEFKIP 339

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
           I +W+SPN+LVIEVRDKDHFVDDTLG C++NI+DLR GQRHDMW+PL+NIKIGRLHLAIT
Sbjct: 340 ICSWESPNMLVIEVRDKDHFVDDTLGACSLNINDLRGGQRHDMWLPLKNIKIGRLHLAIT 399

Query: 181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPK 240
           VLE++ ++  D   D   L+ E +  +++    +  R S A ET+ + SFSS +SE++ K
Sbjct: 400 VLEDNEEEA-DQIDDKEILDNETLDEEDEDQEDK--RNSLARETSLRDSFSS-ASERTSK 455

Query: 241 VADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAA 300
           VAD +EPINIEGQQETGIWVH PGSEV+QTWEPRKGK+R +D+ +    N SF S NS A
Sbjct: 456 VADKYEPINIEGQQETGIWVHHPGSEVSQTWEPRKGKSRHIDSQITGEGNDSFRSPNSIA 515

Query: 301 SGSLNNDSSSTDDNQEGK-----NSIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRAN 355
           SGS +ND SSTD+N EGK     N++RRGL KIG++F RN RKED++ +IGE + SP +N
Sbjct: 516 SGSFHNDGSSTDENSEGKKAQAINTVRRGLEKIGTVFHRN-RKEDNSSNIGEIISSPPSN 574

Query: 356 LRAVNTKDVGVKFIVEDSLSGSIPVKATK-DINVSSDESGPESPSRGHVKGMAKSIMKHA 414
           +R VN+K +GV+FIVED+LS     +  K D +   + S PESPS+G+VK MAK  +K A
Sbjct: 575 IREVNSKAIGVRFIVEDNLSKPSSAEVPKEDRSPGHEGSSPESPSKGNVKDMAKCFLKQA 634

Query: 415 EKHARSIKHAFSRKDSTKRRGGTS-PVTERELYVDSDSSDDESLPSSRLERIPDFPIPMS 473
            K AR IKHA SRK S K +G    PV         + S   S+ +S +E IP   I  S
Sbjct: 635 GKSARGIKHALSRKGSRKSQGDQEIPV----FDSSDEDSASSSVCTSTMEAIP--VISTS 688

Query: 474 SCSTRDDNCDTKEQITRTSSSDPEADILGQTDKVSADSE--EKKDDDEVNKTEGVDDGQI 531
             S  +D    KEQ+    +  P A I     +   D E  E   D+  + +EG  D  +
Sbjct: 689 ISSHGNDPVAHKEQVVLIGA--PAASIEEPVSETKVDDEGREGMGDNIASSSEGNGDALV 746

Query: 532 E 532
           E
Sbjct: 747 E 747

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549572|ref|XP_003543166.1| PREDICTED: C2 domain-containing protein At1g53590-like isoform 1 [Glycine max]

 Score =  550 bits (1417), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/466 (61%), Positives = 357/466 (76%), Gaps = 21/466 (4%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
           MTVKP+FTHGLDVTE PGIAGWLDKLLSIAFEQTLVEPNMLVVDV+KF SPQ  +WF V+
Sbjct: 216 MTVKPMFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPQQESWFKVN 275

Query: 61  VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
            KEPVAYA+VEV+EAS+MKPSDLNGLADPYVKGQ+G YRFRTK QRKTL+PKWHEEF +P
Sbjct: 276 EKEPVAYAKVEVIEASEMKPSDLNGLADPYVKGQMGVYRFRTKIQRKTLTPKWHEEFKVP 335

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
           I TW+S NVLVI VRDKDHF DD LGDCT+NI++ RDGQRHDMW+ L+N+K+GRL LAIT
Sbjct: 336 IITWESDNVLVIAVRDKDHFYDDILGDCTVNINEFRDGQRHDMWLSLKNMKMGRLRLAIT 395

Query: 181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPK 240
           +LE++ K GVD+     T ++E M  +E + + E      ANETTD  SFS V  EKS K
Sbjct: 396 ILEDNGK-GVDT----TTRDQETMDFEERKISFE------ANETTDNSSFSPVPPEKSEK 444

Query: 241 VADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAA 300
           +ADN+EPI+I+GQ+ETG+WVH PGSEV+Q WEPRKGK+RRLDT +   PN S  S NS  
Sbjct: 445 LADNYEPIDIDGQKETGVWVHHPGSEVSQRWEPRKGKSRRLDTEIHGEPNDSVGSGNSTV 504

Query: 301 SGSLNNDSSSTDDNQEGKN---SIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANLR 357
           SGSLNNDSSS D+N E K+   ++R+GL KIGS+F R+ R+E  +GS+ E + SP  N+R
Sbjct: 505 SGSLNNDSSSPDNNPEEKHRMRTVRKGLHKIGSVFHRSKRREGFSGSVDEEILSPHDNIR 564

Query: 358 AVNTKD-VGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPS--RGHVKGMAKSIMKHA 414
           + N K  + VKF++++++SG    K   +   S++ SGPESP+  +G+VK MAK+I KHA
Sbjct: 565 SENAKGMIAVKFVMDENISGFQTGKVQAE-GGSTEGSGPESPASAKGNVKDMAKNIFKHA 623

Query: 415 EKHARSIKHAFSRKDSTKRRGGTSP-VTERELYVDSDSSDDESLPS 459
           EK AR ++H  S K    +  G SP V ERE   +SDSSD+ES+ +
Sbjct: 624 EKSARGLRHVLSCKSRKLKFKGESPTVPEREH--ESDSSDEESIAA 667

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549574|ref|XP_003543167.1| PREDICTED: C2 domain-containing protein At1g53590-like isoform 2 [Glycine max]

 Score =  545 bits (1405), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 283/467 (60%), Positives = 351/467 (75%), Gaps = 32/467 (6%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
           MTVKP+FTHGLDVTE PGIAGWLDKLLSIAFEQTLVEPNMLVVDV+KF SPQ  +WF V+
Sbjct: 216 MTVKPMFTHGLDVTELPGIAGWLDKLLSIAFEQTLVEPNMLVVDVEKFVSPQQESWFKVN 275

Query: 61  VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
            KEPVAYA+VEV+EAS+MKPSDLNGLADPYVKGQ+G YRFRTK QRKTL+PKWHEEF +P
Sbjct: 276 EKEPVAYAKVEVIEASEMKPSDLNGLADPYVKGQMGVYRFRTKIQRKTLTPKWHEEFKVP 335

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
           I TW+S NVLVI VRDKDHF DD LGDCT+NI++ RDGQRHDMW+ L+N+K+GRL LAIT
Sbjct: 336 IITWESDNVLVIAVRDKDHFYDDILGDCTVNINEFRDGQRHDMWLSLKNMKMGRLRLAIT 395

Query: 181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESF-ANETTDKGSFSSVSSEKSP 239
           +LE++ K+ +D                      E+ + SF ANETTD  SFS V  EKS 
Sbjct: 396 ILEDNGKETMDF---------------------EERKISFEANETTDNSSFSPVPPEKSE 434

Query: 240 KVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSA 299
           K+ADN+EPI+I+GQ+ETG+WVH PGSEV+Q WEPRKGK+RRLDT +   PN S  S NS 
Sbjct: 435 KLADNYEPIDIDGQKETGVWVHHPGSEVSQRWEPRKGKSRRLDTEIHGEPNDSVGSGNST 494

Query: 300 ASGSLNNDSSSTDDNQEGKN---SIRRGLRKIGSMFQRNSRKEDHAGSIGEAVPSPRANL 356
            SGSLNNDSSS D+N E K+   ++R+GL KIGS+F R+ R+E  +GS+ E + SP  N+
Sbjct: 495 VSGSLNNDSSSPDNNPEEKHRMRTVRKGLHKIGSVFHRSKRREGFSGSVDEEILSPHDNI 554

Query: 357 RAVNTKD-VGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPS--RGHVKGMAKSIMKH 413
           R+ N K  + VKF++++++SG    K   +   S++ SGPESP+  +G+VK MAK+I KH
Sbjct: 555 RSENAKGMIAVKFVMDENISGFQTGKVQAE-GGSTEGSGPESPASAKGNVKDMAKNIFKH 613

Query: 414 AEKHARSIKHAFSRKDSTKRRGGTSP-VTERELYVDSDSSDDESLPS 459
           AEK AR ++H  S K    +  G SP V ERE   +SDSSD+ES+ +
Sbjct: 614 AEKSARGLRHVLSCKSRKLKFKGESPTVPEREH--ESDSSDEESIAA 658

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294381|dbj|BAB02391.1| unnamed protein product [Arabidopsis thaliana]

 Score =  539 bits (1389), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/463 (61%), Positives = 347/463 (74%), Gaps = 29/463 (6%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSV 59
           MTVKPI THGLDV   PGIAGWLDKLLS+AFEQTLVEPNMLVVD++KF SP+ G NWF V
Sbjct: 140 MTVKPITTHGLDVAVLPGIAGWLDKLLSVAFEQTLVEPNMLVVDMEKFVSPESGDNWFFV 199

Query: 60  DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
           D KEPVA+A VEVVEA D+KPSDLNGLADPYVKGQLG YRF+TK   KTL+PKW EEF I
Sbjct: 200 DEKEPVAHALVEVVEACDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKI 259

Query: 120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 179
           PI TWDS N+L IEV+DKD F DD+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAI
Sbjct: 260 PICTWDSANILNIEVQDKDRFSDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAI 319

Query: 180 TVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSP 239
           TVLE+ AK   D P +G T+             KED+  SFA++ T+KGSFSSV S+KSP
Sbjct: 320 TVLEDEAKLN-DDPFEGVTI------------CKEDMWASFASDVTNKGSFSSVVSDKSP 366

Query: 240 KVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSA 299
           +V DN EPINIEGQ+ETGIWVHQPG+EV+Q WEPRKGK+R LD  ++        S  S 
Sbjct: 367 RVPDNMEPINIEGQEETGIWVHQPGTEVSQIWEPRKGKSRCLDNKIQ-----CAGSVRST 421

Query: 300 ASGSLNNDSSSTDDNQEGKN---SIRRGLRKIGSMFQRNSRKED--HAGSIGEAVPSPRA 354
           AS S NN+SSSTD NQEGK+   S+  GL+KIG +F +N +KE+  H GSI E + SPR 
Sbjct: 422 ASTSPNNESSSTDKNQEGKSEMKSVGWGLKKIGLVFHKNGKKEECHHTGSIEEDIRSPRI 481

Query: 355 NLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHA 414
           NL+A+N KDVGVKFIVED LSG +  ++ K  +  S+    +S  + H+K +AKSI+KHA
Sbjct: 482 NLKALNQKDVGVKFIVEDRLSGPLTGRSPKGESFDSE----DSQHKRHMKDVAKSILKHA 537

Query: 415 EKHARSIKHAFSRKDSTKRRGG-TSPVTERELYVDSDSSDDES 456
           EK AR +KHAFS K S K R    S V+E++    S++SDD+S
Sbjct: 538 EKSARHLKHAFSHKGSRKSRDDECSTVSEQDSECLSETSDDKS 580

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|186510060|ref|NP_001118626.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|332642022|gb|AEE75543.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/463 (61%), Positives = 347/463 (74%), Gaps = 29/463 (6%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSV 59
           MTVKPI THGLDV   PGIAGWLDKLLS+AFEQTLVEPNMLVVD++KF SP+ G NWF V
Sbjct: 217 MTVKPITTHGLDVAVLPGIAGWLDKLLSVAFEQTLVEPNMLVVDMEKFVSPESGDNWFFV 276

Query: 60  DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
           D KEPVA+A VEVVEA D+KPSDLNGLADPYVKGQLG YRF+TK   KTL+PKW EEF I
Sbjct: 277 DEKEPVAHALVEVVEACDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKI 336

Query: 120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 179
           PI TWDS N+L IEV+DKD F DD+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAI
Sbjct: 337 PICTWDSANILNIEVQDKDRFSDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAI 396

Query: 180 TVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSP 239
           TVLE+ AK   D P +G T+             KED+  SFA++ T+KGSFSSV S+KSP
Sbjct: 397 TVLEDEAKLN-DDPFEGVTI------------CKEDMWASFASDVTNKGSFSSVVSDKSP 443

Query: 240 KVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSA 299
           +V DN EPINIEGQ+ETGIWVHQPG+EV+Q WEPRKGK+R LD  ++        S  S 
Sbjct: 444 RVPDNMEPINIEGQEETGIWVHQPGTEVSQIWEPRKGKSRCLDNKIQ-----CAGSVRST 498

Query: 300 ASGSLNNDSSSTDDNQEGKN---SIRRGLRKIGSMFQRNSRKED--HAGSIGEAVPSPRA 354
           AS S NN+SSSTD NQEGK+   S+  GL+KIG +F +N +KE+  H GSI E + SPR 
Sbjct: 499 ASTSPNNESSSTDKNQEGKSEMKSVGWGLKKIGLVFHKNGKKEECHHTGSIEEDIRSPRI 558

Query: 355 NLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHA 414
           NL+A+N KDVGVKFIVED LSG +  ++ K  +  S+    +S  + H+K +AKSI+KHA
Sbjct: 559 NLKALNQKDVGVKFIVEDRLSGPLTGRSPKGESFDSE----DSQHKRHMKDVAKSILKHA 614

Query: 415 EKHARSIKHAFSRKDSTKRRGG-TSPVTERELYVDSDSSDDES 456
           EK AR +KHAFS K S K R    S V+E++    S++SDD+S
Sbjct: 615 EKSARHLKHAFSHKGSRKSRDDECSTVSEQDSECLSETSDDKS 657

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334185353|ref|NP_001189894.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana] gi|332642023|gb|AEE75544.1| calcium-dependent lipid-binding domain-containing protein [Arabidopsis thaliana]

 Score =  539 bits (1388), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 286/463 (61%), Positives = 347/463 (74%), Gaps = 29/463 (6%)

Query: 1   MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSV 59
           MTVKPI THGLDV   PGIAGWLDKLLS+AFEQTLVEPNMLVVD++KF SP+ G NWF V
Sbjct: 186 MTVKPITTHGLDVAVLPGIAGWLDKLLSVAFEQTLVEPNMLVVDMEKFVSPESGDNWFFV 245

Query: 60  DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
           D KEPVA+A VEVVEA D+KPSDLNGLADPYVKGQLG YRF+TK   KTL+PKW EEF I
Sbjct: 246 DEKEPVAHALVEVVEACDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKI 305

Query: 120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 179
           PI TWDS N+L IEV+DKD F DD+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAI
Sbjct: 306 PICTWDSANILNIEVQDKDRFSDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAI 365

Query: 180 TVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSP 239
           TVLE+ AK   D P +G T+             KED+  SFA++ T+KGSFSSV S+KSP
Sbjct: 366 TVLEDEAKLN-DDPFEGVTI------------CKEDMWASFASDVTNKGSFSSVVSDKSP 412

Query: 240 KVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSA 299
           +V DN EPINIEGQ+ETGIWVHQPG+EV+Q WEPRKGK+R LD  ++        S  S 
Sbjct: 413 RVPDNMEPINIEGQEETGIWVHQPGTEVSQIWEPRKGKSRCLDNKIQ-----CAGSVRST 467

Query: 300 ASGSLNNDSSSTDDNQEGKN---SIRRGLRKIGSMFQRNSRKED--HAGSIGEAVPSPRA 354
           AS S NN+SSSTD NQEGK+   S+  GL+KIG +F +N +KE+  H GSI E + SPR 
Sbjct: 468 ASTSPNNESSSTDKNQEGKSEMKSVGWGLKKIGLVFHKNGKKEECHHTGSIEEDIRSPRI 527

Query: 355 NLRAVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHA 414
           NL+A+N KDVGVKFIVED LSG +  ++ K  +  S+    +S  + H+K +AKSI+KHA
Sbjct: 528 NLKALNQKDVGVKFIVEDRLSGPLTGRSPKGESFDSE----DSQHKRHMKDVAKSILKHA 583

Query: 415 EKHARSIKHAFSRKDSTKRRGG-TSPVTERELYVDSDSSDDES 456
           EK AR +KHAFS K S K R    S V+E++    S++SDD+S
Sbjct: 584 EKSARHLKHAFSHKGSRKSRDDECSTVSEQDSECLSETSDDKS 626

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	558
TAIR|locus:2089601	737	NTMC2T6.2 [Arabidopsis thalian	0.763	0.578	0.552	9.5e-121
TAIR|locus:2024912	751	NTMC2T6.1 [Arabidopsis thalian	0.491	0.364	0.665	1.4e-101
TAIR|locus:2095062	815	ATSYTF "AT3G18370" [Arabidopsi	0.188	0.128	0.345	1.7e-13
RGD|1305199	946	Mctp1 "multiple C2 domains, tr	0.250	0.147	0.320	1.2e-10
UNIPROTKB|Q6DN14	999	MCTP1 "Multiple C2 and transme	0.250	0.140	0.320	1.3e-10
UNIPROTKB|A0FGR9	886	ESYT3 "Extended synaptotagmin-	0.324	0.204	0.304	1.9e-10
MGI|MGI:1098699	891	Esyt3 "extended synaptotagmin-	0.324	0.203	0.304	1.9e-10
UNIPROTKB|E1C578	693	MCTP1 "Uncharacterized protein	0.206	0.165	0.338	2.8e-10
UNIPROTKB|Q9BSJ8	1104	ESYT1 "Extended synaptotagmin-	0.197	0.099	0.358	4.1e-10
ZFIN|ZDB-GENE-050809-35	861	esyt3 "extended synaptotagmin-	0.204	0.132	0.341	4.9e-10

TAIR|locus:2089601 NTMC2T6.2 [Arabidopsis thaliana (taxid:3702)]

 Score = 1188 (423.3 bits), Expect = 9.5e-121, P = 9.5e-121
 Identities = 247/447 (55%), Positives = 302/447 (67%)

Query:     1 MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPG-NWFSV 59
             MTVKPI THGLDV   PGIAGWLDKLLS+AFEQTLVEPNMLVVD++KF SP+ G NWF V
Sbjct:   217 MTVKPITTHGLDVAVLPGIAGWLDKLLSVAFEQTLVEPNMLVVDMEKFVSPESGDNWFFV 276

Query:    60 DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
             D KEPVA+A VEVVEA D+KPSDLNGLADPYVKGQLG YRF+TK   KTL+PKW EEF I
Sbjct:   277 DEKEPVAHALVEVVEACDVKPSDLNGLADPYVKGQLGAYRFKTKILWKTLAPKWQEEFKI 336

Query:   120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 179
             PI TWDS N+L IEV+DKD F DD+LGDC++NI++ R GQR+DMW+PLQNIK+GRLHLAI
Sbjct:   337 PICTWDSANILNIEVQDKDRFSDDSLGDCSVNIAEFRGGQRNDMWLPLQNIKMGRLHLAI 396

Query:   180 TVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGXXXXXXXXXXP 239
             TVLE+ AK   D P +G T+ KE            D+  SFA++ T+KG          P
Sbjct:   397 TVLEDEAKLN-DDPFEGVTICKE------------DMWASFASDVTNKGSFSSVVSDKSP 443

Query:   240 KVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTXXX 299
             +V DN EPINIEGQ+ETGIWVHQPG+EV+Q WEPRKGK+R LD  ++    GS  ST   
Sbjct:   444 RVPDNMEPINIEGQEETGIWVHQPGTEVSQIWEPRKGKSRCLDNKIQCA--GSVRSTAST 501

Query:   300 XXXXXXXXXXXXXXXQEGKNSIRRGLRKIGSMFQRNSRKED--HAGSIGEAVPSPRANLR 357
                            +    S+  GL+KIG +F +N +KE+  H GSI E + SPR NL+
Sbjct:   502 SPNNESSSTDKNQEGKSEMKSVGWGLKKIGLVFHKNGKKEECHHTGSIEEDIRSPRINLK 561

Query:   358 AVNTKDVGVKFIVEDSLSGSIPVKATKDINVSSDESGPESPSRGHVKGMAKSIMKHAEKH 417
             A+N KDVGVKFIVED LSG +  ++ K  +  S++S  +   +   K + K   K A   
Sbjct:   562 ALNQKDVGVKFIVEDRLSGPLTGRSPKGESFDSEDSQHKRHMKDVAKSILKHAEKSARHL 621

Query:   418 ARSIKHAFSRKDSTKRRGGTSPVTERE 444
               +  H  SRK    R    S V+E++
Sbjct:   622 KHAFSHKGSRKS---RDDECSTVSEQD 645

GO:0005576 "extracellular region" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2024912 NTMC2T6.1 [Arabidopsis thaliana (taxid:3702)]

 Score = 1007 (359.5 bits), Expect = 1.4e-101, P = 1.4e-101
 Identities = 193/290 (66%), Positives = 228/290 (78%)

Query:     1 MTVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVD 60
             MTVKPIFTHGLDV   PGIAGWLDKLLSIAFEQTLV+PNMLVVD++KF SP   NWF VD
Sbjct:   217 MTVKPIFTHGLDVAVLPGIAGWLDKLLSIAFEQTLVQPNMLVVDMEKFVSPTSENWFFVD 276

Query:    61 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIP 120
              KEPVA+  VEV EASD+KPSDLNGLADPYVKG+LG YRF+TK Q+KTLSPKWHEEF IP
Sbjct:   277 EKEPVAHVLVEVFEASDLKPSDLNGLADPYVKGKLGAYRFKTKIQKKTLSPKWHEEFKIP 336

Query:   121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
             I TWDSP++L IEV DKD FVDDTLG+C++NI + R GQR+DMW+ LQNIK+GRLHLAIT
Sbjct:   337 IFTWDSPSILNIEVGDKDRFVDDTLGECSVNIEEFRGGQRNDMWLSLQNIKMGRLHLAIT 396

Query:   181 VLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGXXXXXXXXXXPK 240
             V+E++AK   D P             K+ + NKEDI+ SFA++TT+ G          P 
Sbjct:   397 VIEDNAKSS-DDPL------------KKAKLNKEDIQTSFASDTTNLGSFSSDKS---PS 440

Query:   241 VADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPN 290
             V DNFEPI I+GQ+ET IWV +PG+EV+Q WEPRKGK+RRLD+ ++R PN
Sbjct:   441 VVDNFEPIKIDGQEETAIWVQKPGAEVSQIWEPRKGKSRRLDSQIQRTPN 490

GO:0009507 "chloroplast" evidence=ISM

GO:0005773 "vacuole" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2095062 ATSYTF "AT3G18370" [Arabidopsis thaliana (taxid:3702)]

 Score = 188 (71.2 bits), Expect = 1.7e-13, Sum P(2) = 1.7e-13
 Identities = 38/110 (34%), Positives = 62/110 (56%)

Query:    72 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV 131
             +VEA D+  +D+ G +DPYV+ Q G  + RTK   KTL PKW++    P    D  + L 
Sbjct:   611 LVEARDLVAADIRGTSDPYVRVQYGEKKQRTKVIYKTLQPKWNQTMEFP----DDGSSLE 666

Query:   132 IEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT 180
             + V+D +  +   ++G+C +    L+  +  D WI LQ +K G +H+ +T
Sbjct:   667 LHVKDYNTLLPTSSIGNCVVEYQGLKPNETADKWIILQGVKHGEVHVRVT 716

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1305199 Mctp1 "multiple C2 domains, transmembrane 1" [Rattus norvegicus (taxid:10116)]

 Score = 184 (69.8 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 49/153 (32%), Positives = 82/153 (53%)

Query:    70 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
             + ++E  D+K  D NGL+DPYVK +LG  ++++K   KTL+P+W E+F+  +   +   V
Sbjct:   421 ITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYE-ERGGV 479

Query:   130 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQ 188
             + I   DKD    DD +G C +++S L   Q H + + L+  + G L L +T L  SA  
Sbjct:   480 MDITAWDKDAGKRDDFIGRCQVDLSSLSREQTHKLELQLEEGE-GHLVLLVT-LTASATV 537

Query:   189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFA 221
              +        L+   M   ED   +E+I + ++
Sbjct:   538 SISD------LSVNSM---EDHKEREEILKRYS 561

GO:0005509 "calcium ion binding" evidence=ISO

GO:0016021 "integral to membrane" evidence=ISO

GO:0005544 "calcium-dependent phospholipid binding" evidence=ISO

UNIPROTKB|Q6DN14 MCTP1 "Multiple C2 and transmembrane domain-containing protein 1" [Homo sapiens (taxid:9606)]

 Score = 184 (69.8 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 49/153 (32%), Positives = 83/153 (54%)

Query:    70 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
             + ++E  D+K  D NGL+DPYVK +LG  ++++K   KTL+P+W E+F+  +   +   V
Sbjct:   474 ITLIEGRDLKAMDSNGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYE-ERGGV 532

Query:   130 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQ 188
             + I   DKD    DD +G C +++S L   Q H + + L+  + G L L +T L  SA  
Sbjct:   533 IDITAWDKDAGKRDDFIGRCQVDLSALSREQTHKLELQLEEGE-GHLVLLVT-LTASATV 590

Query:   189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFA 221
              +        L+   +   EDQ  +E+I + ++
Sbjct:   591 SISD------LSVNSL---EDQKEREEILKRYS 614

GO:0005509 "calcium ion binding" evidence=IDA

GO:0005544 "calcium-dependent phospholipid binding" evidence=IDA

GO:0019722 "calcium-mediated signaling" evidence=NAS

GO:0016021 "integral to membrane" evidence=IDA

UNIPROTKB|A0FGR9 ESYT3 "Extended synaptotagmin-3" [Homo sapiens (taxid:9606)]

 Score = 182 (69.1 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 59/194 (30%), Positives = 89/194 (45%)

Query:    10 GL-DVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYA 68
             GL ++ + PGI    D LL       LV PN + V V K       +  ++    P    
Sbjct:   254 GLTNLLDAPGINDVSDSLLEDLIATHLVLPNRVTVPVKKGL-----DLTNLRFPLPCGVI 308

Query:    69 RVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW 124
             RV ++EA  +   D    L G +DPY K  +G   FR++T  + L+P W+E F   +  +
Sbjct:   309 RVHLLEAEQLAQKDNFLGLRGKSDPYAKVSIGLQHFRSRTIYRNLNPTWNEVFEFMV--Y 366

Query:   125 DSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 183
             + P   L +++ D+D   DD LG   I + D+   +  D W  L +   GRLHL +  L 
Sbjct:   367 EVPGQDLEVDLYDEDTDRDDFLGSLQICLGDVMTNRVVDEWFVLNDTTSGRLHLRLEWLS 426

Query:   184 ESAKQGVDSPCDGG 197
                 Q V +   GG
Sbjct:   427 LLTDQEVLTEDHGG 440

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

MGI|MGI:1098699 Esyt3 "extended synaptotagmin-like protein 3" [Mus musculus (taxid:10090)]

 Score = 182 (69.1 bits), Expect = 1.9e-10, P = 1.9e-10
 Identities = 59/194 (30%), Positives = 87/194 (44%)

Query:    10 GL-DVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYA 68
             GL ++ + PGI    D LL       LV PN + V V K          ++ V  P    
Sbjct:   258 GLTNLLDMPGINELSDSLLEDLIAAHLVLPNRVTVPVKKGLDVT-----NLRVPLPCGVI 312

Query:    69 RVEVVEASDMKPSD----LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW 124
             RV ++EA  +   D    L G +DPY K  +G    R++T  K L+P W+E F   +  +
Sbjct:   313 RVHLLEAKKLAQKDNFLGLGGKSDPYAKVSIGLQHCRSRTIYKNLNPTWNEVFEFMV--Y 370

Query:   125 DSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE 183
             + P   L +++ D+D   DD LG   I + D+   +  D W  L +   GRLHL +  L 
Sbjct:   371 EVPGQDLEVDLYDEDTDKDDFLGSLQICLGDVMKNRVVDEWFALNDTTSGRLHLRLEWLS 430

Query:   184 ESAKQGVDSPCDGG 197
                 Q   +  D G
Sbjct:   431 LLTDQEALTENDSG 444

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1C578 MCTP1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 179 (68.1 bits), Expect = 2.8e-10, P = 2.8e-10
 Identities = 40/118 (33%), Positives = 70/118 (59%)

Query:    70 VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
             + ++E  ++K  D NGL+DPYVK +LG  ++++K   KTL+P+W E+F+  +   +   +
Sbjct:   168 ITLIEGRELKAMDANGLSDPYVKFRLGHQKYKSKIMPKTLNPQWREQFDFHLYE-ERGGI 226

Query:   130 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESA 186
             + I V DKD    DD +G C +++S L   Q H + + L+  + G L L +T+   +A
Sbjct:   227 IDITVWDKDAGKKDDFIGRCQVDLSTLSKEQTHKLEMLLEEGE-GCLVLLVTLTASAA 283

GO:0005509 "calcium ion binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q9BSJ8 ESYT1 "Extended synaptotagmin-1" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 42/117 (35%), Positives = 67/117 (57%)

Query:    69 RVEVVEASDMKPSD--LNGL----ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 122
             R+ V+EA D+   D  L GL    +DPYVK +L    FR+   R+ L+P+W+E F + ++
Sbjct:   650 RIHVLEAQDLIAKDRFLGGLVKGKSDPYVKLKLAGRSFRSHVVREDLNPRWNEVFEVIVT 709

Query:   123 TWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 179
             +      L +EV DKD   DD LG C + ++ + +    D W+ L+++  GRLHL +
Sbjct:   710 SVPGQE-LEVEVFDKDLDKDDFLGRCKVRLTTVLNSGFLDEWLTLEDVPSGRLHLRL 765

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-050809-35 esyt3 "extended synaptotagmin-like protein 3" [Danio rerio (taxid:7955)]

 Score = 178 (67.7 bits), Expect = 4.9e-10, P = 4.9e-10
 Identities = 42/123 (34%), Positives = 71/123 (57%)

Query:    64 PVAYARVEVVEASDM--KPSDLNGL----ADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF 117
             P    RV V+EA D+  K S + GL    +DPY   ++G   F+TKT ++TL+P+W+E +
Sbjct:   300 PRGVVRVHVLEARDLVAKDSHMMGLVKGKSDPYTVLRVGNKHFKTKTIKETLNPRWNEVY 359

Query:   118 NIPISTWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLH 176
                I   ++P   L +E+ D+D   DD LG  +++  D+R  +  D W  L++I+ G++H
Sbjct:   360 EFVIH--EAPGQELEVELYDEDKDADDFLGRFSMDCGDVRKDREIDKWYTLEDIESGQIH 417

Query:   177 LAI 179
               +
Sbjct:   418 FKL 420

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: NTMC2T6 integral membrane single C2 domain protein (595 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	558
cd00030	102	cd00030, C2, C2 domain	2e-25
smart00239	101	smart00239, C2, Protein kinase C conserved region	2e-21
cd08391	121	cd08391, C2A_C2C_Synaptotagmin_like, C2 domain fir	3e-20
cd08376	116	cd08376, C2B_MCTP_PRT, C2 domain second repeat fou	7e-20
pfam00168	85	pfam00168, C2, C2 domain	6e-19
cd04040	115	cd04040, C2D_Tricalbin-like, C2 domain fourth repe	3e-17
cd04026	131	cd04026, C2_PKC_alpha_gamma, C2 domain in Protein	3e-16
cd04024	128	cd04024, C2A_Synaptotagmin-like, C2 domain first r	1e-13
cd04035	123	cd04035, C2A_Rabphilin_Doc2, C2 domain first repea	4e-13
cd04019	150	cd04019, C2C_MCTP_PRT_plant, C2 domain third repea	1e-12
cd04009	133	cd04009, C2B_Munc13-like, C2 domain second repeat	2e-12
cd04042	121	cd04042, C2A_MCTP_PRT, C2 domain first repeat foun	2e-12
cd04031	125	cd04031, C2A_RIM1alpha, C2 domain first repeat con	5e-12
cd04036	119	cd04036, C2_cPLA2, C2 domain present in cytosolic	6e-12
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	9e-12
cd08384	133	cd08384, C2B_Rabphilin_Doc2, C2 domain second repe	3e-11
cd04014	132	cd04014, C2_PKC_epsilon, C2 domain in Protein Kina	4e-11
cd08377	119	cd08377, C2C_MCTP_PRT, C2 domain third repeat foun	6e-11
COG5038	1227	COG5038, COG5038, Ca2+-dependent lipid-binding pro	1e-10
cd00276	134	cd00276, C2B_Synaptotagmin, C2 domain second repea	2e-10
cd08385	124	cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain	2e-10
cd00275	128	cd00275, C2_PLC_like, C2 domain present in Phospho	3e-10
cd08387	124	cd08387, C2A_Synaptotagmin-8, C2A domain first rep	3e-10
cd04033	133	cd04033, C2_NEDD4_NEDD4L, C2 domain present in the	1e-09
cd08375	136	cd08375, C2_Intersectin, C2 domain present in Inte	2e-09
cd04038	145	cd04038, C2_ArfGAP, C2 domain present in Arf GTPas	3e-09
cd04043	126	cd04043, C2_Munc13_fungal, C2 domain in Munc13 (ma	3e-09
cd04046	126	cd04046, C2_Calpain, C2 domain present in Calpain	2e-08
cd04037	124	cd04037, C2E_Ferlin, C2 domain fifth repeat in Fer	3e-08
cd08681	118	cd08681, C2_fungal_Inn1p-like, C2 domain found in	4e-08
cd08386	125	cd08386, C2A_Synaptotagmin-7, C2A domain first rep	5e-08
cd04022	127	cd04022, C2A_MCTP_PRT_plant, C2 domain first repea	7e-08
cd04041	111	cd04041, C2A_fungal, C2 domain first repeat; funga	8e-08
cd08682	126	cd08682, C2_Rab11-FIP_classI, C2 domain found in R	1e-07
cd04052	111	cd04052, C2B_Tricalbin-like, C2 domain second repe	3e-07
cd04025	123	cd04025, C2B_RasA1_RasA4, C2 domain second repeat	6e-07
cd04027	127	cd04027, C2B_Munc13, C2 domain second repeat in Mu	7e-07
cd08405	136	cd08405, C2B_Synaptotagmin-7, C2 domain second rep	7e-07
cd04044	124	cd04044, C2A_Tricalbin-like, C2 domain first repea	1e-06
cd04045	120	cd04045, C2C_Tricalbin-like, C2 domain third repea	2e-06
cd08676	153	cd08676, C2A_Munc13-like, C2 domain first repeat i	6e-06
cd08378	121	cd08378, C2B_MCTP_PRT_plant, C2 domain second repe	8e-06
cd08402	136	cd08402, C2B_Synaptotagmin-1, C2 domain second rep	1e-05
cd08401	121	cd08401, C2A_RasA2_RasA3, C2 domain first repeat p	1e-05
cd04049	124	cd04049, C2_putative_Elicitor-responsive_gene, C2	2e-05
cd08675	137	cd08675, C2B_RasGAP, C2 domain second repeat of Ra	3e-05
cd08379	126	cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repe	6e-05
cd08388	128	cd08388, C2A_Synaptotagmin-4-11, C2A domain first	6e-05
cd04039	108	cd04039, C2_PSD, C2 domain present in Phosphatidyl	7e-05
cd04030	127	cd04030, C2C_KIAA1228, C2 domain third repeat pres	9e-05
cd08688	110	cd08688, C2_KIAA0528-like, C2 domain found in the	1e-04
cd04011	111	cd04011, C2B_Ferlin, C2 domain second repeat in Fe	1e-04
cd08403	134	cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain s	2e-04
cd04050	105	cd04050, C2B_Synaptotagmin-like, C2 domain second	3e-04
cd08395	120	cd08395, C2C_Munc13, C2 domain third repeat in Mun	0.002
cd08390	123	cd08390, C2A_Synaptotagmin-15-17, C2A domain first	0.002
cd04017	135	cd04017, C2D_Ferlin, C2 domain fourth repeat in Fe	0.003
cd04015	158	cd04015, C2_plant_PLD, C2 domain present in plant	0.003
PLN03008	868	PLN03008, PLN03008, Phospholipase D delta	0.004

>gnl|CDD|175973 cd00030, C2, C2 domain

 Score =  100 bits (250), Expect = 2e-25
 Identities = 46/102 (45%), Positives = 66/102 (64%), Gaps = 4/102 (3%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSP 127
           RV V+EA ++   DLNG +DPYVK  LG   +F+TK  + TL+P W+E F  P+   +S 
Sbjct: 2   RVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDPES- 60

Query: 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRD-GQRHDMWIPL 167
           + L +EV DKD F  DD LG+  I +S+L D G+  ++W+PL
Sbjct: 61  DTLTVEVWDKDRFSKDDFLGEVEIPLSELLDSGKEGELWLPL 102

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 102

>gnl|CDD|214577 smart00239, C2, Protein kinase C conserved region 2 (CalB)

 Score = 88.7 bits (220), Expect = 2e-21
 Identities = 38/100 (38%), Positives = 54/100 (54%), Gaps = 5/100 (5%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWD 125
            V+++ A ++ P D  G +DPYVK  L      + +TK  + TL+P W+E F   +   +
Sbjct: 3   TVKIISARNLPPKDKGGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE 62

Query: 126 SPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMW 164
               L IEV DKD F  DD +G  TI +SDL  G RH+  
Sbjct: 63  L-AELEIEVYDKDRFGRDDFIGQVTIPLSDLLLGGRHEKL 101

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotagmins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles. Length = 101

>gnl|CDD|176037 cd08391, C2A_C2C_Synaptotagmin_like, C2 domain first and third repeat in Synaptotagmin-like proteins

 Score = 86.2 bits (214), Expect = 3e-20
 Identities = 40/116 (34%), Positives = 65/116 (56%), Gaps = 9/116 (7%)

Query: 69  RVEVVEASDMKPSDLN------GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 122
           R+ V+EA D+   D        G +DPYV  ++G   F++K  ++ L+PKW+E +   + 
Sbjct: 4   RIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVD 63

Query: 123 TWDSPNV-LVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 177
             + P   L IE+ D+D   DD LG  +I++  +      D W+PL+++K GRLHL
Sbjct: 64  --EVPGQELEIELFDEDPDKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHL 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains either the first or third repeat in Synaptotagmin-like proteins with a type-I topology. Length = 121

>gnl|CDD|176022 cd08376, C2B_MCTP_PRT, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 85.0 bits (211), Expect = 7e-20
 Identities = 43/115 (37%), Positives = 68/115 (59%), Gaps = 3/115 (2%)

Query: 68  ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 127
             + +VE  ++ P D NGL+DPYVK +LG  ++++K   KTL+P+W E+F++ +   D  
Sbjct: 2   VTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFD-DQS 60

Query: 128 NVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181
            +L IEV DKD    D+ +G C I++S L   Q H + + L     G L L +T+
Sbjct: 61  QILEIEVWDKDTGKKDEFIGRCEIDLSALPREQTHSLELEL-EDGEGSLLLLLTL 114

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 116

>gnl|CDD|215765 pfam00168, C2, C2 domain

 Score = 81.2 bits (201), Expect = 6e-19
 Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWD 125
           RV V+ A ++ P DLNG +DPYVK  LG  +    +TK  + TL+P W+E F   ++  +
Sbjct: 2   RVTVISAKNLPPKDLNGKSDPYVKVSLGGQKKDTKKTKVVKNTLNPVWNETFTFEVTLPE 61

Query: 126 SPNVLVIEVRDKDHF-VDDTLGDCT 149
               L IEV D D F  DD +G+ T
Sbjct: 62  L-AELRIEVYDYDRFGKDDFIGEVT 85

Length = 85

>gnl|CDD|176005 cd04040, C2D_Tricalbin-like, C2 domain fourth repeat present in Tricalbin-like proteins

 Score = 77.2 bits (191), Expect = 3e-17
 Identities = 43/115 (37%), Positives = 66/115 (57%), Gaps = 8/115 (6%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 127
            V+V+ A ++  +D NG +DP+VK  L G   F+TKT +KTL+P W+E F +P+ +    
Sbjct: 2   TVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPS-RVR 60

Query: 128 NVLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL---QNIKIGRLHL 177
            VL +EV D D     DD LG   I++SDL   +  ++ +PL      K+G + L
Sbjct: 61  AVLKVEVYDWD-RGGKDDLLGSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVFL 114

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 115

>gnl|CDD|175992 cd04026, C2_PKC_alpha_gamma, C2 domain in Protein Kinase C (PKC) alpha and gamma

 Score = 75.0 bits (185), Expect = 3e-16
 Identities = 43/113 (38%), Positives = 60/113 (53%), Gaps = 7/113 (6%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPY-----RFRTKTQRKTLSPKWHEEFNIPISTW 124
           VEV EA ++ P D NGL+DPYVK +L P      + +TKT +KTL+P W+E F   +   
Sbjct: 17  VEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPA 76

Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLH 176
           D    L IEV D D    +D +G  +  +S+L      D W  L N + G  +
Sbjct: 77  DKDRRLSIEVWDWDRTTRNDFMGSLSFGVSELIK-MPVDGWYKLLNQEEGEYY 128

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 131

>gnl|CDD|175990 cd04024, C2A_Synaptotagmin-like, C2 domain first repeat present in Synaptotagmin-like proteins

 Score = 67.4 bits (165), Expect = 1e-13
 Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 14/126 (11%)

Query: 69  RVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 126
           RV VVEA D+   D    G +DPY    +G  RF+T+T   TL+PKW+     PI +  +
Sbjct: 4   RVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFSAQN 63

Query: 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ-------NIKIGRL 175
             +L + + DKD F   D LG+  I + ++       + D WI L+       ++  G +
Sbjct: 64  Q-LLKLILWDKDRFAGKDYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEI 122

Query: 176 HLAITV 181
           HL  + 
Sbjct: 123 HLQFSW 128

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176000 cd04035, C2A_Rabphilin_Doc2, C2 domain first repeat present in Rabphilin and Double C2 domain

 Score = 65.8 bits (161), Expect = 4e-13
 Identities = 36/105 (34%), Positives = 52/105 (49%), Gaps = 7/105 (6%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFN-IPIST 123
             ++ A  +K  D NGL+DPYVK  L P      + RTKT  KT +P+++E      I+ 
Sbjct: 19  CTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITE 78

Query: 124 WDSPN-VLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL 167
            D     L + V D+D F +D LG+  I +  L+  Q     I L
Sbjct: 79  EDIQRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL 123

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175986 cd04019, C2C_MCTP_PRT_plant, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 65.0 bits (159), Expect = 1e-12
 Identities = 43/146 (29%), Positives = 63/146 (43%), Gaps = 30/146 (20%)

Query: 67  YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEEFNI----PI 121
           Y RV V+EA D+ PSD N + + +VK QLG    RT+  Q +  +P W+EE       P 
Sbjct: 1   YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAEPF 60

Query: 122 STWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL--RDGQR--HDMWIPLQNI------- 170
              D   + V +    +   D+ LG   I ++D+  R   R     W  L+         
Sbjct: 61  E--DHLILSVEDRVGPNK--DEPLGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQK 116

Query: 171 KI----GRLHLAIT------VLEESA 186
           K      R+HL +       VL+ES 
Sbjct: 117 KKRKFASRIHLRLCLDGGYHVLDEST 142

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 150

>gnl|CDD|175976 cd04009, C2B_Munc13-like, C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 64.2 bits (157), Expect = 2e-12
 Identities = 29/98 (29%), Positives = 52/98 (53%), Gaps = 11/98 (11%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP-YRF------RTKTQRKTLSPKWHEEFNIPI 121
           RVE++ A ++ P D NG +DP+VK +L P + F      +T+ ++KTL P + E F   +
Sbjct: 19  RVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNV 78

Query: 122 STWDSPN---VLVIEVRDKDHF-VDDTLGDCTINISDL 155
                     +L+  V+D D    +D  G+  + ++D+
Sbjct: 79  PPEQCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDI 116

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 133

>gnl|CDD|176007 cd04042, C2A_MCTP_PRT, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 63.8 bits (156), Expect = 2e-12
 Identities = 34/119 (28%), Positives = 61/119 (51%), Gaps = 8/119 (6%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSP 127
            + + E  ++   D  G +DPYVK +  G   +++KT  K L+P W E+F +PI     P
Sbjct: 3   DIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIEDVTQP 62

Query: 128 NVLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWIPLQN----IKIGRLHLAITV 181
             L I+V D D    DD +G   +++S L   +  ++ + L++      +G + L +T+
Sbjct: 63  --LYIKVFDYDRGLTDDFMGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTL 119

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 121

>gnl|CDD|175997 cd04031, C2A_RIM1alpha, C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

 Score = 62.7 bits (153), Expect = 5e-12
 Identities = 40/118 (33%), Positives = 59/118 (50%), Gaps = 31/118 (26%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRF-----RTKTQRKTLSPKWHEEF---NIP- 120
           V V++A D+ P D   L +PYVK  L P R      RTKT +KTL+P+W++ F   N+  
Sbjct: 20  VTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRR 79

Query: 121 ---------ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLR-DGQRHDMWIPLQ 168
                    ++ WD         RD +   +D LG+  I+++D   D + H  W PLQ
Sbjct: 80  ETLKERTLEVTVWDYD-------RDGE---NDFLGEVVIDLADALLDDEPH--WYPLQ 125

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology and do not bind Ca2+. Length = 125

>gnl|CDD|176001 cd04036, C2_cPLA2, C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

 Score = 62.3 bits (152), Expect = 6e-12
 Identities = 31/96 (32%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPISTWD 125
            V V+ A+++   DL    D YV+  L      + RTKT + +++P W+E F   I +  
Sbjct: 3   TVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQS-Q 61

Query: 126 SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRH 161
             NVL + V D+D+ +DD LG    ++S L+ G++ 
Sbjct: 62  VKNVLELTVMDEDYVMDDHLGTVLFDVSKLKLGEKV 97

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members of this cd have a type-II topology. Length = 119

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 67.9 bits (166), Expect = 9e-12
 Identities = 41/174 (23%), Positives = 88/174 (50%), Gaps = 17/174 (9%)

Query: 10  GLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYAR 69
           G+D+   PG++ ++ ++++      L+ PN L +D+ +  +   G          +    
Sbjct: 388 GVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGDSGT--------AIGVVE 439

Query: 70  VEVVEASDMKPSD--LNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 126
           V++  A  +K SD  +NG  DPY+          +T+ ++ TL+P W+E F I ++++  
Sbjct: 440 VKIKSAEGLKKSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNSFTD 499

Query: 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIK-IGRLH 176
           P  L + + D + F  D  +G   ++++ L     ++++++  L+N K +GRL 
Sbjct: 500 P--LNLSLYDFNSFKSDKVVGSTQLDLALLHQNPVKKNELYEFLRNTKNVGRLT 551

Length = 1227

>gnl|CDD|176030 cd08384, C2B_Rabphilin_Doc2, C2 domain second repeat present in Rabphilin and Double C2 domain

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 9/103 (8%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++   ++   D NG +DP+VK  L P      + +T+ ++KTL+P+++EEF   I   
Sbjct: 17  VGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHS 76

Query: 125 DSPN-VLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWI 165
           D     L I V DKD    +D +G   + I+   +  RH  W+
Sbjct: 77  DLAKKTLEITVWDKDIGKSNDYIGGLQLGINAKGERLRH--WL 117

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 133

>gnl|CDD|175981 cd04014, C2_PKC_epsilon, C2 domain in Protein Kinase C (PKC) epsilon

 Score = 60.4 bits (147), Expect = 4e-11
 Identities = 38/138 (27%), Positives = 58/138 (42%), Gaps = 39/138 (28%)

Query: 67  YARVEVVEASDMKPSDLNG----------LADPYVKGQLGPYRF-RTKTQRKTLSPKWHE 115
             ++++ EA D+KP+D +           L DPYV   +      +T T+ KT SP W+E
Sbjct: 5   TLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNE 64

Query: 116 EFNIPISTWDSPNVLVIEVRDKDH-----FVDDTLGD------CTINISDLRDGQRH--D 162
           EF               EV +  +     F D  +G       CTI+  DL        D
Sbjct: 65  EF-------------TTEVHNGRNLELTVFHDAAIGPDDFVANCTISFEDLIQRGSGSFD 111

Query: 163 MWIPLQNIKIGRLHLAIT 180
           +W+ L+    G+LH+ I 
Sbjct: 112 LWVDLE--PQGKLHVKIE 127

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 132

>gnl|CDD|176023 cd08377, C2C_MCTP_PRT, C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

 Score = 59.6 bits (145), Expect = 6e-11
 Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 5/107 (4%)

Query: 67  YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 126
           + +V+V+ AS +  +D+ G +DP+   +L   R +T T  KTL+P+W++ F  PI   D 
Sbjct: 2   FLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPI--KDI 59

Query: 127 PNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQNIKI 172
            +VL + V D+D     + LG   I +  +++G+R   W  L++ K+
Sbjct: 60  HDVLEVTVYDEDKDKKPEFLGKVAIPLLSIKNGERK--WYALKDKKL 104

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 119

>gnl|CDD|227371 COG5038, COG5038, Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

 Score = 64.0 bits (156), Expect = 1e-10
 Identities = 49/159 (30%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 25   KLLSIAFEQTLV--EPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSD 82
             L+S A+E+      P    V V    +P P     V++ E   Y  + +    ++  SD
Sbjct: 997  DLVSNAYEKPSSLNFPGSAKVLVQVSYTPVPVKLPPVEMVENSGYLTIMLRSGENLPSSD 1056

Query: 83   LNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF- 140
             NG +DP+VK  L     ++TK  +KTL+P W+EEF I +      +VL I V D D   
Sbjct: 1057 ENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN-RVKDVLTINVNDWDSGE 1115

Query: 141  VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAI 179
             +D LG   I++S L  G   +  IPL       L   +
Sbjct: 1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKTFIVLDGTL 1154

Length = 1227

>gnl|CDD|175975 cd00276, C2B_Synaptotagmin, C2 domain second repeat present in Synaptotagmin

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 30/99 (30%), Positives = 49/99 (49%), Gaps = 7/99 (7%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V++A ++ PSD  GL+DPYVK  L        + +T  ++ TL+P ++E F+  +   
Sbjct: 18  VVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAE 77

Query: 125 DSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 161
               V LVI V DKD    ++ +G   +      +   H
Sbjct: 78  QLEEVSLVITVVDKDSVGRNEVIGQVVLGPDSGGEELEH 116

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176031 cd08385, C2A_Synaptotagmin-1-5-6-9-10, C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

 Score = 58.0 bits (141), Expect = 2e-10
 Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHEEFNIPISTWDS 126
           V +++A+D+   D+ G +DPYVK  L P +   F TK  RKTL+P ++E F   +   + 
Sbjct: 20  VGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSEL 79

Query: 127 PN-VLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMW 164
            N  LV  V D D F   D +G+  + +  +  G   + W
Sbjct: 80  GNKTLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEW 119

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175974 cd00275, C2_PLC_like, C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 32/119 (26%), Positives = 52/119 (43%), Gaps = 13/119 (10%)

Query: 69  RVEVVEASD-MKPSDLNG-LADPYVK------GQLGPYRFRTKT-QRKTLSPKWHEEFNI 119
            ++++      KP    G + DPYV+            +F+TK  +    +P W+E F  
Sbjct: 5   TIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEF 64

Query: 120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 178
            ++  +    L   V D+D   DD LG   + +  LR G RH   +PL + K   L L+
Sbjct: 65  DVTVPEL-AFLRFVVYDEDSGDDDFLGQACLPLDSLRQGYRH---VPLLDSKGEPLELS 119

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-II topology. Length = 128

>gnl|CDD|176033 cd08387, C2A_Synaptotagmin-8, C2A domain first repeat present in Synaptotagmin 8

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 32/118 (27%), Positives = 67/118 (56%), Gaps = 5/118 (4%)

Query: 57  FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRF---RTKTQRKTLSPKW 113
           FS++  + +    V++++A +++P D +G ADPY K +L P R    ++K  +KTL+P++
Sbjct: 7   FSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEF 66

Query: 114 HEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169
            E F   +   + P   L + + D D F  D+ +G   + ++++   ++ D+W  +Q+
Sbjct: 67  DESFVFEVPPQELPKRTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQS 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 124

>gnl|CDD|175999 cd04033, C2_NEDD4_NEDD4L, C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

 Score = 56.2 bits (136), Expect = 1e-09
 Identities = 34/97 (35%), Positives = 53/97 (54%), Gaps = 14/97 (14%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYR---------FRTKTQRKTLSPKWHEEFNI 119
           RV+V+   D+   D+ G +DPYVK  L  Y           +TKT +KTL+PKW+EEF  
Sbjct: 3   RVKVLAGIDLAKKDIFGASDPYVKISL--YDPDGNGEIDSVQTKTIKKTLNPKWNEEFFF 60

Query: 120 PISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 155
            ++     + L+ EV D++    DD LG   + +++L
Sbjct: 61  RVNP--REHRLLFEVFDENRLTRDDFLGQVEVPLNNL 95

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 133

>gnl|CDD|176021 cd08375, C2_Intersectin, C2 domain present in Intersectin

 Score = 55.5 bits (134), Expect = 2e-09
 Identities = 33/90 (36%), Positives = 48/90 (53%), Gaps = 4/90 (4%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD-SP 127
            V +VE  D+KP + NG +DPY +  +G    +TK    TL+PKW    ++     D   
Sbjct: 18  MVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKW--NSSMQFFVKDLEQ 75

Query: 128 NVLVIEVRDKDHFV-DDTLGDCTINISDLR 156
           +VL I V D+D F  DD LG   I ++D+ 
Sbjct: 76  DVLCITVFDRDFFSPDDFLGRTEIRVADIL 105

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. The members here have topology I. Length = 136

>gnl|CDD|176003 cd04038, C2_ArfGAP, C2 domain present in Arf GTPase Activating Proteins (GAP)

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 30/96 (31%), Positives = 52/96 (54%), Gaps = 4/96 (4%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 128
           +V VV  +++   D    +DPYV   LG  + +T+  +K L+P W+EE  + +   +   
Sbjct: 5   KVRVVRGTNLAVRDFTS-SDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVP--NPMA 61

Query: 129 VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDM 163
            L +EV DKD F  DD++G+  I++  L +  + D 
Sbjct: 62  PLKLEVFDKDTFSKDDSMGEAEIDLEPLVEAAKLDH 97

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 145

>gnl|CDD|176008 cd04043, C2_Munc13_fungal, C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 34/123 (27%), Positives = 60/123 (48%), Gaps = 18/123 (14%)

Query: 70  VEVVEASDMKPSDLNGLADPYV-------KGQLGPYRFRTKTQRKTLSPKWHEEFNIPIS 122
           + +V A ++K    NGL+DPYV       K ++     +T+T   TL+P+W EEF + + 
Sbjct: 5   IRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIA----KTRTIYDTLNPRWDEEFELEVP 60

Query: 123 TWDSPNVLVIEVRDKDHFVD-DTLGDCTINISDLR---DGQRHDMWIPLQNIKIGRLHLA 178
               P  +   V D+      D  G  ++ +   R   DG   ++W+ L + + GRL L 
Sbjct: 61  A-GEPLWISATVWDRSFVGKHDLCGRASLKLDPKRFGDDGLPREIWLDL-DTQ-GRLLLR 117

Query: 179 ITV 181
           +++
Sbjct: 118 VSM 120

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 126

>gnl|CDD|176011 cd04046, C2_Calpain, C2 domain present in Calpain proteins

 Score = 52.3 bits (126), Expect = 2e-08
 Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 2/99 (2%)

Query: 64  PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST 123
           P    +V V  A  +   D  G ADPYV  +      R+  Q+ TLSP++  +       
Sbjct: 1   PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK 60

Query: 124 WDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHD 162
             SP  + I+V + +   D+ LG  T++           
Sbjct: 61  PRSP--IKIQVWNSNLLCDEFLGQATLSADPNDSQTLRT 97

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176002 cd04037, C2E_Ferlin, C2 domain fifth repeat in Ferlin

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 12/93 (12%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNI----PIS 122
           RV VV A +++P D NG +DPY+K +LG  +   R      TL+P + + F +    P +
Sbjct: 3   RVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATLPGN 62

Query: 123 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISD 154
           +     +L I V D D    DD +G+  I++ D
Sbjct: 63  S-----ILKISVMDYDLLGSDDLIGETVIDLED 90

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fifth C2 repeat, C2E, and has a type-II topology. Length = 124

>gnl|CDD|176063 cd08681, C2_fungal_Inn1p-like, C2 domain found in fungal Ingression 1 (Inn1) proteins

 Score = 51.5 bits (124), Expect = 4e-08
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 2/83 (2%)

Query: 88  DPYVKGQLGPYRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 146
           DPY   ++G    +TKT  +    P+W EE    I+  D   +L + V D D    D +G
Sbjct: 23  DPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITE-DKKPILKVAVFDDDKRKPDLIG 81

Query: 147 DCTINISDLRDGQRHDMWIPLQN 169
           D  +++S        D W  L  
Sbjct: 82  DTEVDLSPALKEGEFDDWYELTL 104

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contributing both to membrane ingression, as well as to stability of the contracting ring. Additionally, Inn1 might induce curvature of the plasma membrane adjacent to the contracting ring, thereby promoting ingression of the membrane. It has been shown that the C2 domain of human synaptotagmin induces curvature in target membranes and thereby contributes to fusion of these membranes with synaptic vesicles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 118

>gnl|CDD|176032 cd08386, C2A_Synaptotagmin-7, C2A domain first repeat present in Synaptotagmin 7

 Score = 51.2 bits (123), Expect = 5e-08
 Identities = 29/106 (27%), Positives = 56/106 (52%), Gaps = 8/106 (7%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNI---PIST 123
           +++++A ++   D +G +DP+VK  L P   ++  TK +RK L+P W+E F     P   
Sbjct: 20  LKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEK 79

Query: 124 WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168
                VL ++V D D F  +D +G+ ++ ++ +   +    W  L+
Sbjct: 80  LQQ-RVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLK 124

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 125

>gnl|CDD|175989 cd04022, C2A_MCTP_PRT_plant, C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 50.8 bits (122), Expect = 7e-08
 Identities = 24/65 (36%), Positives = 37/65 (56%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
           VEVV+A D+ P D  G +  YV+      + RT+T+ K L+P W+E+    +S     + 
Sbjct: 4   VEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSN 63

Query: 130 LVIEV 134
           LV+EV
Sbjct: 64  LVLEV 68

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 127

>gnl|CDD|176006 cd04041, C2A_fungal, C2 domain first repeat; fungal group

 Score = 50.3 bits (121), Expect = 8e-08
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 7/94 (7%)

Query: 69  RVEVVEASDMKPSDLN-GLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPIS-- 122
            V +  A+D+  +D   G +DPYV       G   + T+  RK L+P W E + + ++  
Sbjct: 4   VVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPD 63

Query: 123 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL 155
              +   L   + D D F  DD LG   I++ +L
Sbjct: 64  EVKAGERLSCRLWDSDRFTADDRLGRVEIDLKEL 97

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 111

>gnl|CDD|176064 cd08682, C2_Rab11-FIP_classI, C2 domain found in Rab11-family interacting proteins (FIP) class I

 Score = 50.5 bits (121), Expect = 1e-07
 Identities = 33/109 (30%), Positives = 53/109 (48%), Gaps = 7/109 (6%)

Query: 68  ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEE--FNIPISTWD 125
            +V V++A  +     +G  D YV  QLG  ++ T  + KT SP W EE  F +P     
Sbjct: 1   VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSG 60

Query: 126 SPN--VLVIEVRDKDHF-VDDTLGDCTINISDL--RDGQRHDMWIPLQN 169
           + N   L + V  ++   +D  LG  +I ++DL    G+R   W  L++
Sbjct: 61  NGNRATLQLTVMHRNLLGLDKFLGQVSIPLNDLDEDKGRRRTRWFKLES 109

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The members in this CD are class I FIPs. The exact function of the Rab11 and FIP interaction is unknown, but there is speculation that it involves the role of forming a targeting complex that recruits a group of proteins involved in membrane transport to organelles. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 126

>gnl|CDD|176017 cd04052, C2B_Tricalbin-like, C2 domain second repeat present in Tricalbin-like proteins

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 25/102 (24%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 81  SDLNGLADPYVK----GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD 136
               GL  PY +    G+L    + T+ ++KT +P W+      ++     + + + V+D
Sbjct: 7   ESKTGLLSPYAELYLNGKL---VYTTRVKKKTNNPSWNASTEFLVTDRRK-SRVTVVVKD 62

Query: 137 KDHFVDDTLGDCTINISDLRD-GQRHDMWIPLQNIKIGRLHL 177
                D  LG  +I+++DL D       W PL     GR+ +
Sbjct: 63  DRDRHDPVLGSVSISLNDLIDATSVGQQWFPLSGNGQGRIRI 104

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|175991 cd04025, C2B_RasA1_RasA4, C2 domain second repeat present in RasA1 and RasA4

 Score = 48.3 bits (115), Expect = 6e-07
 Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 6/103 (5%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHE--EFNIPISTWDS 126
           R  V+EA D+ P D NG +DP+V+         T   +K+  P+W+E  EF +      +
Sbjct: 3   RCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG---A 59

Query: 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168
            + L +EV D D    +D LG    +I  L+  ++ + W  L 
Sbjct: 60  DSPLSVEVWDWDLVSKNDFLGKVVFSIQTLQQAKQEEGWFRLL 102

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 123

>gnl|CDD|175993 cd04027, C2B_Munc13, C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 48.3 bits (115), Expect = 7e-07
 Identities = 34/109 (31%), Positives = 52/109 (47%), Gaps = 12/109 (11%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF---------NIP 120
           + VV A  +   D  G +DPYV  Q+G  + RTKT  + L+P W+E+F          I 
Sbjct: 5   ITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHNSSDRIK 64

Query: 121 ISTWDSPNVLVIEVRDK-DHFVDDTLGDCTINISDLRDGQRHDMWIPLQ 168
           +  WD  + +   ++ K     DD LG   I +  L  G+  D+W  L+
Sbjct: 65  VRVWDEDDDIKSRLKQKFTRESDDFLGQTIIEVRTL-SGEM-DVWYNLE 111

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 127

>gnl|CDD|176050 cd08405, C2B_Synaptotagmin-7, C2 domain second repeat present in Synaptotagmin 7

 Score = 48.2 bits (115), Expect = 7e-07
 Identities = 28/78 (35%), Positives = 44/78 (56%), Gaps = 12/78 (15%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQL--GPYRF---RTKTQRKTLSPKWHEEF--NIPIS 122
           V +++A ++K  D+NG +DPYVK  L     R    +T  +++TL+P ++E F  NIP  
Sbjct: 19  VNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIP-- 76

Query: 123 TWDS--PNVLVIEVRDKD 138
             +      L+I V DKD
Sbjct: 77  -LERLRETTLIITVMDKD 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176009 cd04044, C2A_Tricalbin-like, C2 domain first repeat present in Tricalbin-like proteins

 Score = 47.2 bits (113), Expect = 1e-06
 Identities = 28/92 (30%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 70  VEVVEASDMKPSD-LNGLADPYVKGQLGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDS 126
           V +  A  +K SD + G  DPYV   +   R   RTK ++ T +P W+E   I +++   
Sbjct: 6   VTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNSLTE 65

Query: 127 PNVLVIEVRDK-DHFVDDTLGDCTINISDLRD 157
           P  L + V D  D   D  +G    ++S L  
Sbjct: 66  P--LNLTVYDFNDKRKDKLIGTAEFDLSSLLQ 95

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-II topology. Length = 124

>gnl|CDD|176010 cd04045, C2C_Tricalbin-like, C2 domain third repeat present in Tricalbin-like proteins

 Score = 46.4 bits (111), Expect = 2e-06
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 68  ARVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 126
            R+ + +A+D+K  +  G  DPYV+  + G  + RT T   TL+P W E   +P++   S
Sbjct: 3   LRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVT---S 59

Query: 127 PN-VLVIEVRDKDHFVDD-TLGDCTINISDL 155
           PN  + +EV D +    D +LG   IN+SDL
Sbjct: 60  PNQKITLEVMDYEKVGKDRSLGSVEINVSDL 90

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176058 cd08676, C2A_Munc13-like, C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 36/136 (26%)

Query: 62  KEPVAYARVEVVEASDMKPSDLNGLADPY---------------------------VKGQ 94
           + P+   +V V+EA  +   D+NG +DPY                           V   
Sbjct: 24  EPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKD 83

Query: 95  LGPYRF--RTKTQRKTLSPKWHEEFNIPISTWDSPN-VLVIEVRDKDHFVDDTLGDCTIN 151
             P +    T+ + +TL+P W+E F   +   D  N  L +++ D D   DD LG   I 
Sbjct: 84  TVPAKSIKVTEVKPQTLNPVWNETFRFEVE--DVSNDQLHLDIWDHD---DDFLGCVNIP 138

Query: 152 ISDLRDGQRHDMWIPL 167
           + DL      D W  L
Sbjct: 139 LKDLP-SCGLDSWFKL 153

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 153

>gnl|CDD|176024 cd08378, C2B_MCTP_PRT_plant, C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 29/95 (30%), Positives = 45/95 (47%), Gaps = 11/95 (11%)

Query: 67  YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDS 126
           Y  V VV+A  +         DP V+ +LG Y+  TK   +T +P+W++ F     + D 
Sbjct: 1   YLYVRVVKARGLPA----NSNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAF---SKDR 53

Query: 127 P--NVLVIEVRDKDHFVDDTLGDCTINISD--LRD 157
              + L + V DKD   DD LG    ++S+   R 
Sbjct: 54  LQGSTLEVSVWDKDKAKDDFLGGVCFDLSEVPTRV 88

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 121

>gnl|CDD|176047 cd08402, C2B_Synaptotagmin-1, C2 domain second repeat present in Synaptotagmin 1

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 31/103 (30%), Positives = 51/103 (49%), Gaps = 9/103 (8%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFR-----TKTQRKTLSPKWHEEFNIPISTW 124
           V ++EA ++K  D+ GL+DPYVK  L     R     T  +++TL+P ++E F+  +   
Sbjct: 19  VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFE 78

Query: 125 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH--DM 163
               V L++ V D D    +D +G   +  +      RH  DM
Sbjct: 79  QIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAELRHWSDM 121

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 136

>gnl|CDD|176046 cd08401, C2A_RasA2_RasA3, C2 domain first repeat present in RasA2 and RasA3

 Score = 44.3 bits (105), Expect = 1e-05
 Identities = 28/88 (31%), Positives = 40/88 (45%), Gaps = 12/88 (13%)

Query: 100 FRTKTQRKTLSPKWHEE--FNIPISTWDSPNVLVIEVRDKDHFVDDT-LGDCTINISDLR 156
           FRTKT  K+L P + E+  F IP +       L   + D+D    D+ +G   I   DL 
Sbjct: 36  FRTKTVEKSLCPFFGEDFYFEIPRTF----RHLSFYIYDRDVLRRDSVIGKVAIKKEDLH 91

Query: 157 DGQRHDMWIPLQNIKI-----GRLHLAI 179
                D W PLQ +       G++HL +
Sbjct: 92  KYYGKDTWFPLQPVDADSEVQGKVHLEL 119

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 121

>gnl|CDD|176014 cd04049, C2_putative_Elicitor-responsive_gene, C2 domain present in the putative elicitor-responsive gene

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 27/95 (28%), Positives = 49/95 (51%), Gaps = 14/95 (14%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLS------PKWHEE--FNIPI 121
           V ++ A  ++ +D  G  DPYV  Q      RT+ ++  ++      P+W+E+  F +  
Sbjct: 5   VLLISAKGLQDTDFLGKIDPYVIIQ-----CRTQERKSKVAKGDGRNPEWNEKFKFTVEY 59

Query: 122 STWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL 155
             W     L++ + DKD+F  DD +G+ TI++  L
Sbjct: 60  PGWGGDTKLILRIMDKDNFSDDDFIGEATIHLKGL 94

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members have a type-II topology. Length = 124

>gnl|CDD|176057 cd08675, C2B_RasGAP, C2 domain second repeat of Ras GTPase activating proteins (GAPs)

 Score = 43.5 bits (103), Expect = 3e-05
 Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 20/119 (16%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRF----RTKTQRKTLSPKWHE--EFNIPIS 122
            V V+E  D+     NG  DP+ +  L         RTK ++KT +P++ E   F + I 
Sbjct: 2   SVRVLECRDLALKS-NGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIG 60

Query: 123 T---------WD---SPNVLVIEVRDKDHFVDDT-LGDCTINISDLRDGQRHDMWIPLQ 168
                      +     + L +E+        D  LG+  I +  L+    H  W  LQ
Sbjct: 61  FSYEKKSFKVEEEDLEKSELRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQ 119

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Members here have a type-I topology. Length = 137

>gnl|CDD|176025 cd08379, C2D_MCTP_PRT_plant, C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

 Score = 42.4 bits (100), Expect = 6e-05
 Identities = 29/114 (25%), Positives = 49/114 (42%), Gaps = 15/114 (13%)

Query: 78  MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK 137
           ++  D  G  D Y   + GP   RT+T   + +P+W+E++  P+  +D   VL + V D 
Sbjct: 15  LRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPV--YDPCTVLTVGVFDN 72

Query: 138 DHFVDDT-------LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLA 178
                         +G   I +S L D + +    PL ++      K+G L  A
Sbjct: 73  SQSHWKEAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELECA 126

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 126

>gnl|CDD|176034 cd08388, C2A_Synaptotagmin-4-11, C2A domain first repeat present in Synaptotagmins 4 and 11

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 19/100 (19%)

Query: 69  RVEVVEASDMKPSDL-NGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTW 124
            V ++E  D+   D  +G +DPYVK QL P   ++ +T+  RKT +P + E F      +
Sbjct: 19  LVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPY 78

Query: 125 DSPNVLVIEVRDKDHFV---------DDTLGDCTINISDL 155
           +    L +      HF          DD +G+    ++  
Sbjct: 79  NQLQDLSL------HFAVLSFDRYSRDDVIGEVVCPLAGA 112

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 128

>gnl|CDD|176004 cd04039, C2_PSD, C2 domain present in Phosphatidylserine decarboxylase (PSD)

 Score = 41.9 bits (99), Expect = 7e-05
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 1/76 (1%)

Query: 88  DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF-VDDTLG 146
           DP+V    G   FRT  +R TL+P ++E     +   +    +  +V DKD F  +D + 
Sbjct: 27  DPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFSFNDYVA 86

Query: 147 DCTINISDLRDGQRHD 162
             ++++ +L +     
Sbjct: 87  TGSLSVQELLNAAPQP 102

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 108

>gnl|CDD|175996 cd04030, C2C_KIAA1228, C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

 Score = 41.9 bits (99), Expect = 9e-05
 Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 9/108 (8%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V +  ++ P D + + DPYV+  L P      R +T  ++  L+P + E F  P+S  
Sbjct: 20  VTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLE 79

Query: 125 DSPN-VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQ 168
           +     L + V++   F+      LG   I++SDL   +    W  L 
Sbjct: 80  ELKRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT 127

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 127

>gnl|CDD|176070 cd08688, C2_KIAA0528-like, C2 domain found in the Human KIAA0528 cDNA clone

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 9/107 (8%)

Query: 69  RVEVVEASDMKPSD-LNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEE---FNIPISTW 124
           +V VV A D+   D  + L D +V+ + G   ++T   +K+L+P W+ E   F +     
Sbjct: 2   KVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEEL 61

Query: 125 DSPNVLVIEVRDKDHF-VDDTLGDCTINISDL-RDGQRHDM--WIPL 167
                L I V D D +  +D +G   I+++ L        +  W P+
Sbjct: 62  QD-EPLQIRVMDHDTYSANDAIGKVYIDLNPLLLKDSVSQISGWFPI 107

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 110

>gnl|CDD|175978 cd04011, C2B_Ferlin, C2 domain second repeat in Ferlin

 Score = 41.0 bits (97), Expect = 1e-04
 Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 15/111 (13%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 128
           RV V+EA  +      G  DP VK ++G  +  T  ++ T  P ++E F       +SP+
Sbjct: 7   RVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFH--ESPD 60

Query: 129 VL-----VIEVRDKDHFVDDTL-GDCTINISDLRDGQRHDM---WIPLQNI 170
            L      I V D      DTL G   +++  + D   H     W+ L + 
Sbjct: 61  ELFDKIIKISVYDSRSLRSDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTDP 111

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-II topology. Length = 111

>gnl|CDD|176048 cd08403, C2B_Synaptotagmin-3-5-6-9-10, C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 30/103 (29%), Positives = 55/103 (53%), Gaps = 11/103 (10%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQL---GPY--RFRTKTQRKTLSPKWHEE--FNIPIS 122
           + +++A ++K  D+ G +DPYVK  L   G    + +T  ++ TL+P ++E   F++P  
Sbjct: 18  LTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPE 77

Query: 123 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMW 164
             D+ + L+I V D D    ++ +G C   +    DGQ  + W
Sbjct: 78  NVDNVS-LIIAVVDYDRVGHNELIGVC--RVGPNADGQGREHW 117

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 134

>gnl|CDD|176015 cd04050, C2B_Synaptotagmin-like, C2 domain second repeat present in Synaptotagmin-like proteins

 Score = 39.9 bits (94), Expect = 3e-04
 Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 7/70 (10%)

Query: 88  DPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV--LVIEVRDKDHFVDDTL 145
            PYV+  +G    ++K + +T +P W E F   +    +P    L IEV+D       +L
Sbjct: 22  SPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVR---NPENQELEIEVKDDKT--GKSL 76

Query: 146 GDCTINISDL 155
           G  T+ +S+L
Sbjct: 77  GSLTLPLSEL 86

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the second C2 repeat, C2B, and has a type-I topology. Length = 105

>gnl|CDD|176041 cd08395, C2C_Munc13, C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 11/108 (10%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQL-GPY------RFRTKTQRKTLSPKWHEEFNIPIS 122
           V+VV A+D+K     G+  P+V+  L GP+      +F TK++    SPK++E F   + 
Sbjct: 4   VKVVAANDLK-WQTTGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILG 62

Query: 123 TWDSPNVLVIEVRDKDH-FV--DDTLGDCTINISDLRDGQRHDMWIPL 167
             D P    + +  KD+ F   D  +G   + + D+        W+PL
Sbjct: 63  NEDDPESYELHICVKDYCFARDDRLVGVTVLQLRDIAQAGSCACWLPL 110

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevin, and synaptotagmin suggesting a role for these as scaffolding proteins.C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the third C2 repeat, C2C, and has a type-II topology. Length = 120

>gnl|CDD|176036 cd08390, C2A_Synaptotagmin-15-17, C2A domain first repeat present in Synaptotagmins 15 and 17

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 5/90 (5%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP--YRFR-TKTQRKTLSP 111
           WFSV          V +++A ++ P   +    DP+VK  L P   R   +K +RKT +P
Sbjct: 4   WFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNP 63

Query: 112 KWHEEFNIPISTWDSPN-VLVIEVRDKDHF 140
            + E F   +S  +     L + V D D F
Sbjct: 64  NFDETFVFQVSFKELQRRTLRLSVYDVDRF 93

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the first C2 repeat, C2A, and has a type-I topology. Length = 123

>gnl|CDD|175984 cd04017, C2D_Ferlin, C2 domain fourth repeat in Ferlin

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 10/79 (12%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHE-----EFNIP--I 121
           R  + +A D+  +D +GL+DP+ +         T+  ++TLSP W +     E  +    
Sbjct: 4   RAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSP 63

Query: 122 STW--DSPNVLVIEVRDKD 138
                + P V V+E+ D+D
Sbjct: 64  EEIAQNPPLV-VVELFDQD 81

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. This cd contains the fourth C2 repeat, C2D, and has a type-II topology. Length = 135

>gnl|CDD|175982 cd04015, C2_plant_PLD, C2 domain present in plant phospholipase D (PLD)

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)

Query: 88  DPYVKGQLGPYRF-RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG 146
           DPY    L   R  RT+    + +P W+E F+I  + + S   +   V+D D      +G
Sbjct: 59  DPYATVDLAGARVARTRVIENSENPVWNESFHIYCAHYASH--VEFTVKDNDVVGAQLIG 116

Query: 147 DCTINISDLRDGQRHDMWIPL 167
              I + DL  G+  + W+P+
Sbjct: 117 RAYIPVEDLLSGEPVEGWLPI 137

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions. Length = 158

>gnl|CDD|178585 PLN03008, PLN03008, Phospholipase D delta

 Score = 40.1 bits (93), Expect = 0.004
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 87  ADPYVKGQLGPYRF-RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTL 145
           +DPYV   +      RT+  + +  P W E+FNI I+       L  +V+D D F    +
Sbjct: 77  SDPYVTVVVPQATLARTRVLKNSQEPLWDEKFNISIA--HPFAYLEFQVKDDDVFGAQII 134

Query: 146 GDCTINISDLRDGQRHDMWIPL 167
           G   I + D+  G+R   W P+
Sbjct: 135 GTAKIPVRDIASGERISGWFPV 156

Length = 868

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	558
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	100.0
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.9
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	99.88
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.87
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	99.87
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.86
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	99.86
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	99.86
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.85
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	99.85
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	99.85
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	99.85
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	99.85
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	99.85
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	99.84
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	99.84
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	99.84
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	99.84
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.84
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	99.84
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	99.84
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	99.83
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	99.83
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	99.83
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	99.83
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	99.83
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	99.83
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	99.83
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.83
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.83
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	99.83
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	99.83
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	99.82
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	99.81
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	99.81
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	99.81
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	99.81
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.8
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	99.8
cd08407	138	C2B_Synaptotagmin-13 C2 domain second repeat prese	99.8
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	99.8
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	99.8
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	99.8
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	99.8
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.79
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.79
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	99.79
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	99.78
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	99.78
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	99.78
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	99.78
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.77
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.77
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	99.77
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.77
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	99.77
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.77
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	99.76
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.76
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	99.76
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	99.76
cd08406	136	C2B_Synaptotagmin-12 C2 domain second repeat prese	99.76
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.76
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	99.76
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	99.75
cd08692	135	C2B_Tac2-N C2 domain second repeat found in Tac2-N	99.75
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	99.75
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	99.75
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	99.75
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.75
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	99.75
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	99.74
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	99.74
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	99.73
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	99.73
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	99.71
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	99.7
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	99.7
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	99.7
cd08409	137	C2B_Synaptotagmin-15 C2 domain second repeat prese	99.69
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	99.69
KOG0696	683	consensus Serine/threonine protein kinase [Signal	99.69
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	99.69
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	99.69
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	99.69
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	99.68
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	99.67
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	99.67
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	99.66
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	99.66
cd08408	138	C2B_Synaptotagmin-14_16 C2 domain second repeat pr	99.65
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	99.65
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	99.65
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	99.64
PLN03008	868	Phospholipase D delta	99.64
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	99.62
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	99.62
cd08410	135	C2B_Synaptotagmin-17 C2 domain second repeat prese	99.61
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	99.59
cd08402	136	C2B_Synaptotagmin-1 C2 domain second repeat presen	99.58
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	99.57
cd08403	134	C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repe	99.57
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	99.55
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.55
cd08404	136	C2B_Synaptotagmin-4 C2 domain second repeat presen	99.54
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	99.52
cd08405	136	C2B_Synaptotagmin-7 C2 domain second repeat presen	99.52
cd08384	133	C2B_Rabphilin_Doc2 C2 domain second repeat present	99.49
cd08677	118	C2A_Synaptotagmin-13 C2 domain. Synaptotagmin is a	99.47
KOG1028	421	consensus Ca2+-dependent phospholipid-binding prot	99.46
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	99.42
cd00276	134	C2B_Synaptotagmin C2 domain second repeat present	99.38
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	99.35
cd00030	102	C2 C2 domain. The C2 domain was first identified i	99.34
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	99.32
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	99.29
cd04020	162	C2B_SLP_1-2-3-4 C2 domain second repeat present in	99.21
COG5038	1227	Ca2+-dependent lipid-binding protein, contains C2	99.15
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	99.14
PLN02270	808	phospholipase D alpha	99.09
cd04029	125	C2A_SLP-4_5 C2 domain first repeat present in Syna	99.07
PLN02223	537	phosphoinositide phospholipase C	99.07
cd08393	125	C2A_SLP-1_2 C2 domain first repeat present in Syna	99.04
cd08392	128	C2A_SLP-3 C2 domain first repeat present in Synapt	99.02
cd08680	124	C2_Kibra C2 domain found in Human protein Kibra. K	98.99
PLN02952	599	phosphoinositide phospholipase C	98.99
KOG1328	1103	consensus Synaptic vesicle protein BAIAP3, involve	98.98
cd08381	122	C2B_PI3K_class_II C2 domain second repeat present	98.96
cd04028	146	C2B_RIM1alpha C2 domain second repeat contained in	98.94
PLN02230	598	phosphoinositide phospholipase C 4	98.92
cd08388	128	C2A_Synaptotagmin-4-11 C2A domain first repeat pre	98.89
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	98.87
PLN02222	581	phosphoinositide phospholipase C 2	98.87
KOG0169	746	consensus Phosphoinositide-specific phospholipase	98.87
cd08385	124	C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repe	98.86
cd04031	125	C2A_RIM1alpha C2 domain first repeat contained in	98.85
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	98.84
PLN02228	567	Phosphoinositide phospholipase C	98.83
cd04030	127	C2C_KIAA1228 C2 domain third repeat present in unc	98.82
KOG2059	800	consensus Ras GTPase-activating protein [Signal tr	98.8
cd08387	124	C2A_Synaptotagmin-8 C2A domain first repeat presen	98.79
cd08685	119	C2_RGS-like C2 domain of the Regulator Of G-Protei	98.73
cd08395	120	C2C_Munc13 C2 domain third repeat in Munc13 (mamma	98.73
cd08521	123	C2A_SLP C2 domain first repeat present in Synaptot	98.72
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	98.69
cd08389	124	C2A_Synaptotagmin-14_16 C2A domain first repeat pr	98.67
KOG1013	362	consensus Synaptic vesicle protein rabphilin-3A [I	98.66
cd08386	125	C2A_Synaptotagmin-7 C2A domain first repeat presen	98.64
cd08390	123	C2A_Synaptotagmin-15-17 C2A domain first repeat pr	98.61
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	98.6
KOG0696	683	consensus Serine/threonine protein kinase [Signal	98.58
cd08690	155	C2_Freud-1 C2 domain found in 5' repressor element	98.57
cd04035	123	C2A_Rabphilin_Doc2 C2 domain first repeat present	98.53
cd04009	133	C2B_Munc13-like C2 domain second repeat in Munc13	98.52
KOG1327	529	consensus Copine [Signal transduction mechanisms]	98.46
cd04041	111	C2A_fungal C2 domain first repeat; fungal group. C	98.46
cd08691	137	C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-li	98.34
cd04037	124	C2E_Ferlin C2 domain fifth repeat in Ferlin. Ferli	98.34
PLN02352	758	phospholipase D epsilon	98.34
cd08682	126	C2_Rab11-FIP_classI C2 domain found in Rab11-famil	98.33
cd08686	118	C2_ABR C2 domain in the Active BCR (Breakpoint clu	98.32
cd04010	148	C2B_RasA3 C2 domain second repeat present in RAS p	98.3
cd04039	108	C2_PSD C2 domain present in Phosphatidylserine dec	98.28
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	98.28
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.27
cd04032	127	C2_Perforin C2 domain of Perforin. Perforin contai	98.26
cd04011	111	C2B_Ferlin C2 domain second repeat in Ferlin. Ferl	98.26
cd04017	135	C2D_Ferlin C2 domain fourth repeat in Ferlin. Ferl	98.24
cd04026	131	C2_PKC_alpha_gamma C2 domain in Protein Kinase C (	98.2
cd04048	120	C2A_Copine C2 domain first repeat in Copine. There	98.18
cd04018	151	C2C_Ferlin C2 domain third repeat in Ferlin. Ferli	98.18
cd08375	136	C2_Intersectin C2 domain present in Intersectin. A	98.16
cd08688	110	C2_KIAA0528-like C2 domain found in the Human KIAA	98.12
cd08675	137	C2B_RasGAP C2 domain second repeat of Ras GTPase a	98.1
KOG1326	1105	consensus Membrane-associated protein FER-1 and re	98.09
cd04050	105	C2B_Synaptotagmin-like C2 domain second repeat pre	98.08
cd04015	158	C2_plant_PLD C2 domain present in plant phospholip	98.08
KOG1011	1283	consensus Neurotransmitter release regulator, UNC-	98.07
cd08379	126	C2D_MCTP_PRT_plant C2 domain fourth repeat found i	98.06
cd04047	110	C2B_Copine C2 domain second repeat in Copine. Ther	98.04
cd08401	121	C2A_RasA2_RasA3 C2 domain first repeat present in	98.02
cd04019	150	C2C_MCTP_PRT_plant C2 domain third repeat found in	98.0
cd08383	117	C2A_RasGAP C2 domain (first repeat) of Ras GTPase	97.99
cd08378	121	C2B_MCTP_PRT_plant C2 domain second repeat found i	97.98
cd04016	121	C2_Tollip C2 domain present in Toll-interacting pr	97.97
cd04022	127	C2A_MCTP_PRT_plant C2 domain first repeat found in	97.96
cd04036	119	C2_cPLA2 C2 domain present in cytosolic PhosphoLip	97.96
cd08678	126	C2_C21orf25-like C2 domain found in the Human chro	97.95
cd04014	132	C2_PKC_epsilon C2 domain in Protein Kinase C (PKC)	97.94
KOG1030	168	consensus Predicted Ca2+-dependent phospholipid-bi	97.93
cd08681	118	C2_fungal_Inn1p-like C2 domain found in fungal Ing	97.91
cd08373	127	C2A_Ferlin C2 domain first repeat in Ferlin. Ferli	97.91
cd04038	145	C2_ArfGAP C2 domain present in Arf GTPase Activati	97.9
cd08376	116	C2B_MCTP_PRT C2 domain second repeat found in Mult	97.89
cd08400	126	C2_Ras_p21A1 C2 domain present in RAS p21 protein	97.88
cd08382	123	C2_Smurf-like C2 domain present in Smad ubiquitina	97.86
cd08391	121	C2A_C2C_Synaptotagmin_like C2 domain first and thi	97.85
cd04024	128	C2A_Synaptotagmin-like C2 domain first repeat pres	97.84
cd04042	121	C2A_MCTP_PRT C2 domain first repeat found in Multi	97.83
cd04054	121	C2A_Rasal1_RasA4 C2 domain first repeat present in	97.79
PLN02964	644	phosphatidylserine decarboxylase	97.79
cd04025	123	C2B_RasA1_RasA4 C2 domain second repeat present in	97.77
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	97.76
cd04052	111	C2B_Tricalbin-like C2 domain second repeat present	97.75
cd04043	126	C2_Munc13_fungal C2 domain in Munc13 (mammalian un	97.75
cd04033	133	C2_NEDD4_NEDD4L C2 domain present in the Human neu	97.75
cd04027	127	C2B_Munc13 C2 domain second repeat in Munc13 (mamm	97.73
cd08676	153	C2A_Munc13-like C2 domain first repeat in Munc13 (	97.7
cd04046	126	C2_Calpain C2 domain present in Calpain proteins.	97.7
cd08374	133	C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferli	97.68
cd04045	120	C2C_Tricalbin-like C2 domain third repeat present	97.67
cd04044	124	C2A_Tricalbin-like C2 domain first repeat present	97.67
cd08377	119	C2C_MCTP_PRT C2 domain third repeat found in Multi	97.65
cd08394	127	C2A_Munc13 C2 domain first repeat in Munc13 (mamma	97.6
cd04049	124	C2_putative_Elicitor-responsive_gene C2 domain pre	97.59
cd04021	125	C2_E3_ubiquitin_ligase C2 domain present in E3 ubi	97.46
cd04040	115	C2D_Tricalbin-like C2 domain fourth repeat present	97.43
cd08683	143	C2_C2cd3 C2 domain found in C2 calcium-dependent d	97.36
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	97.32
PLN03008	868	Phospholipase D delta	97.27
cd00275	128	C2_PLC_like C2 domain present in Phosphoinositide-	97.1
KOG0905	1639	consensus Phosphoinositide 3-kinase [Signal transd	97.09
cd04051	125	C2_SRC2_like C2 domain present in Soybean genes Re	97.05
PF00168	85	C2: C2 domain; InterPro: IPR000008 The C2 domain i	97.01
KOG3837	523	consensus Uncharacterized conserved protein, conta	96.87
KOG1327	529	consensus Copine [Signal transduction mechanisms]	96.67
smart00239	101	C2 Protein kinase C conserved region 2 (CalB). Ca2	96.55
cd04013	146	C2_SynGAP_like C2 domain present in Ras GTPase act	96.31
PF15627	156	CEP76-C2: CEP76 C2 domain	96.2
cd08684	103	C2A_Tac2-N C2 domain first repeat found in Tac2-N	96.0
KOG1265	1189	consensus Phospholipase C [Lipid transport and met	95.9
cd00030	102	C2 C2 domain. The C2 domain was first identified i	95.85
PLN02223	537	phosphoinositide phospholipase C	95.59
PF12416	340	DUF3668: Cep120 protein; InterPro: IPR022136 This	95.55
KOG2060	405	consensus Rab3 effector RIM1 and related proteins,	95.36
cd08693	173	C2_PI3K_class_I_beta_delta C2 domain present in cl	95.19
PLN02952	599	phosphoinositide phospholipase C	95.05
cd08398	158	C2_PI3K_class_I_alpha C2 domain present in class I	94.73
PLN02230	598	phosphoinositide phospholipase C 4	94.29
PLN02222	581	phosphoinositide phospholipase C 2	94.01
cd08689	109	C2_fungal_Pkc1p C2 domain found in protein kinase	93.99
KOG1452	442	consensus Predicted Rho GTPase-activating protein	93.87
PF10358	143	NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins;	93.84
cd08380	156	C2_PI3K_like C2 domain present in phosphatidylinos	93.66
cd08397	159	C2_PI3K_class_III C2 domain present in class III p	92.46
KOG1031	1169	consensus Predicted Ca2+-dependent phospholipid-bi	91.89
cd04012	171	C2A_PI3K_class_II C2 domain first repeat present i	91.76
PLN02228	567	Phosphoinositide phospholipase C	91.54
cd08399	178	C2_PI3K_class_I_gamma C2 domain present in class I	90.96
KOG1264	1267	consensus Phospholipase C [Lipid transport and met	90.46
cd08687	98	C2_PKN-like C2 domain in Protein kinase C-like (PK	90.21
cd08695	189	C2_Dock-B C2 domains found in Dedicator Of CytoKin	87.64
smart00142	100	PI3K_C2 Phosphoinositide 3-kinase, region postulat	87.05
cd08694	196	C2_Dock-A C2 domains found in Dedicator Of CytoKin	86.91
PF00792	142	PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: I	86.56
PLN02964	644	phosphatidylserine decarboxylase	85.55
PF14429	184	DOCK-C2: C2 domain in Dock180 and Zizimin proteins	85.13
cd08697	185	C2_Dock-D C2 domains found in Dedicator Of CytoKin	83.81
KOG4269	1112	consensus Rac GTPase-activating protein BCR/ABR [S	82.67
cd08679	178	C2_DOCK180_related C2 domains found in Dedicator O	81.0

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=5.2e-40  Score=352.38  Aligned_cols=236  Identities=24%  Similarity=0.348  Sum_probs=207.5

Q ss_pred             CCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           50 SPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        50 s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      ...|.+.|++.|+.....|.|+|++|++|++++..|.+||||+++|.|   .+++|+++++|+||+|||+|.|.|...+ 
T Consensus       151 ~~~G~l~fsl~Yd~~~~~L~V~V~qa~~Lp~~d~~g~sdpyVK~~llPdk~~k~kT~v~r~tlnP~fnEtf~f~v~~~~l  230 (421)
T KOG1028|consen  151 KAVGNLQFSLQYDFELNLLTVRVIQAHDLPAKDRGGTSDPYVKVYLLPDKKGKFKTRVHRKTLNPVFNETFRFEVPYEEL  230 (421)
T ss_pred             eeeeeEEEEEEecccCCEEEEEEEEecCCCcccCCCCCCCeeEEEEcCCCCCcceeeeeecCcCCccccceEeecCHHHh
Confidence            346789999999999999999999999999999778899999999988   5689999999999999999999977533 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEeccCCC----------
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAKQ----------  188 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~~~~l----------  188 (558)
                      ..++|.|.|||+|+|+ |++||++.++|..+........|++|...      ..|+|+++|+|++.++++          
T Consensus       231 ~~~~L~l~V~~~drfsr~~~iGev~~~l~~~~~~~~~~~w~~l~~~~~~~~~~~gel~~sL~Y~p~~g~ltv~v~kar~L  310 (421)
T KOG1028|consen  231 SNRVLHLSVYDFDRFSRHDFIGEVILPLGEVDLLSTTLFWKDLQPSSTDSEELAGELLLSLCYLPTAGRLTVVVIKARNL  310 (421)
T ss_pred             ccCEEEEEEEecCCcccccEEEEEEecCccccccccceeeeccccccCCcccccceEEEEEEeecCCCeEEEEEEEecCC
Confidence            5679999999999998 99999999999999888888899999762      237999999999998762          


Q ss_pred             ------CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEecc--Ccccc-ce
Q 008661          189 ------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE--GQQET-GI  258 (558)
Q Consensus       189 ------~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~d--G~~e~-Gv  258 (558)
                            +++|||||+++   ...+++++|+||.++++++||+|| |+|.|. +.++++.++++++|||++  |.++. |.
T Consensus       311 ~~~~~~~~~d~~Vk~~l---~~~~~~~~kkkT~~~~~~~npv~n-esf~F~vp~~~l~~~~l~l~V~d~d~~~~~~~iG~  386 (421)
T KOG1028|consen  311 KSMDVGGLSDPYVKVTL---LDGDKRLSKKKTSVKKKTLNPVFN-ETFVFDVPPEQLAEVSLELTVWDHDTLGSNDLIGR  386 (421)
T ss_pred             CcccCCCCCCccEEEEE---ecCCceeeeeeeecccCCCCCccc-ccEEEeCCHHHhheeEEEEEEEEcccccccceeeE
Confidence                  34899999999   555799999999999999999999 999999 999999999999999999  55554 64


Q ss_pred             E-EecCC-ccccccCccccCCCCCcccceeecC
Q 008661          259 W-VHQPG-SEVAQTWEPRKGKNRRLDTLVRRVP  289 (558)
Q Consensus       259 ~-v~~pg-t~~~~hW~~~l~~~r~~~~q~~~~~  289 (558)
                      + ++.-+ ....+||.+|+.+||+|+++||.+.
T Consensus       387 ~~lG~~~~~~~~~hW~~m~~~p~~pv~~wh~l~  419 (421)
T KOG1028|consen  387 CILGSDSTGEEVRHWQEMLNSPRKPVAQWHSLR  419 (421)
T ss_pred             EEecCCCCchHHHHHHHHHhCccCceeeeEecc
Confidence            4 33332 2335999999999999999999876

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.90  E-value=2.6e-23  Score=187.82  Aligned_cols=112  Identities=21%  Similarity=0.413  Sum_probs=100.3

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~  127 (558)
                      +.++|+|.|++..+.|+|+|++|++|+   ..|.+||||+++|.+    .+++|+++++|+||+|||+|.|.++..+ ..
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~---~~g~sDPYVKv~L~~~~k~~k~kT~v~rktlnPvfnE~f~F~v~~~~l~~   77 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENIS---VDAGCECYISGCVSVSEGQKEAQTALKKLALHTQWEEELVFPLPEEESLD   77 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCC---CCCCCCeEEEEEEcCCcCccEEEcceecCCCCCccccEEEEeCCHHHhCC
Confidence            357899999999999999999999998   346799999999976    5779999999999999999999998544 45


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeec
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL  167 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L  167 (558)
                      .+|.|+|||+|+++ +++||++.++|.++..+...++|.+|
T Consensus        78 ~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~~  118 (118)
T cd08677          78 GTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVDL  118 (118)
T ss_pred             cEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhcC
Confidence            69999999999998 99999999999998777778889765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=99.88  E-value=7.8e-22  Score=178.76  Aligned_cols=113  Identities=23%  Similarity=0.405  Sum_probs=101.7

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikk-TlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      |.|.|+|++|++|+..+ .|.+||||++.++.++++|+++.+ ++||+|||+|.|.+..  ....|.|+|||+|.++ |+
T Consensus         2 g~L~v~v~~Ak~l~~~~-~g~sDPYv~i~lg~~~~kT~v~~~~~~nP~WNe~F~f~v~~--~~~~l~~~V~d~d~~~~dd   78 (121)
T cd04016           2 GRLSITVVQAKLVKNYG-LTRMDPYCRIRVGHAVYETPTAYNGAKNPRWNKTIQCTLPE--GVDSIYIEIFDERAFTMDE   78 (121)
T ss_pred             cEEEEEEEEccCCCcCC-CCCCCceEEEEECCEEEEeEEccCCCCCCccCeEEEEEecC--CCcEEEEEEEeCCCCcCCc
Confidence            78999999999998777 789999999999999999999875 8999999999999975  3468999999999998 89


Q ss_pred             ccEEEEEecc-cccCCCceeeeeecCC----CCceEEEEEEEE
Q 008661          144 TLGDCTINIS-DLRDGQRHDMWIPLQN----IKIGRLHLAITV  181 (558)
Q Consensus       144 fIGev~IpL~-eL~~~~~~e~W~~L~~----k~~GeL~LsL~y  181 (558)
                      +||.+.++|. .+..++..+.|++|.+    ...|+|+|+|+|
T Consensus        79 ~iG~~~i~l~~~~~~g~~~~~W~~L~~~~~~~~~g~i~l~l~y  121 (121)
T cd04016          79 RIAWTHITIPESVFNGETLDDWYSLSGKQGEDKEGMINLVFSY  121 (121)
T ss_pred             eEEEEEEECchhccCCCCccccEeCcCccCCCCceEEEEEEeC
Confidence            9999999996 5777777899999986    456999999987

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.87  E-value=4.4e-22  Score=179.94  Aligned_cols=116  Identities=25%  Similarity=0.440  Sum_probs=104.6

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      |+++|+|.|+...+.|.|+|++|+||++++.. |.+||||++++.+     .+++|+++++++||+|||+|.|.+...+ 
T Consensus         2 G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~~~~~~~~kT~v~~~t~nP~~nE~f~f~v~~~~l   81 (125)
T cd08393           2 GSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPDKSNRGKRKTSVKKKTLNPVFNETLRYKVEREEL   81 (125)
T ss_pred             cEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcCCCccccccCccCcCCCCCccCceEEEECCHHHh
Confidence            67899999999999999999999999999975 8999999999965     3579999999999999999999987432 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ....|.|+|||++.++ +++||++.|+|.++...+....||+|+
T Consensus        82 ~~~~L~~~V~d~~~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~  125 (125)
T cd08393          82 PTRVLNLSVWHRDSLGRNSFLGEVEVDLGSWDWSNTQPTWYPLQ  125 (125)
T ss_pred             CCCEEEEEEEeCCCCCCCcEeEEEEEecCccccCCCCcceEECc
Confidence            3468999999999987 899999999999998888889999985

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=99.87  E-value=7.7e-22  Score=177.93  Aligned_cols=114  Identities=30%  Similarity=0.373  Sum_probs=101.9

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEee-ccCC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPI-STWD  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V-~~~e  125 (558)
                      +|+++|+|.|+  .+.|.|+|++|++|++++ .+.+||||++++.+     .+++|+++++++||+|||+|.|.+ ...+
T Consensus         1 ~G~l~~~l~y~--~~~L~V~Vi~A~~L~~~~-~~~~DpyVkv~l~~~~~~~~~~kT~v~~~~~nP~wnE~F~f~~~~~~~   77 (122)
T cd08381           1 GGQVKLSISYK--NGTLFVMVMHAKNLPLLD-GSDPDPYVKTYLLPDPQKTTKRKTKVVRKTRNPTFNEMLVYDGLPVED   77 (122)
T ss_pred             CCeEEEEEEEe--CCEEEEEEEEeeCCCCCC-CCCCCCEEEEEEeeCCccCCceeCCccCCCCCCCcccEEEEecCChHH
Confidence            36889999999  789999999999999999 89999999999975     468999999999999999999997 3211


Q ss_pred             -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                       ....|.|+|||++.++ +++||++.|+|.++...+....||+|.
T Consensus        78 l~~~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~  122 (122)
T cd08381          78 LQQRVLQVSVWSHDSLVENEFLGGVCIPLKKLDLSQETEKWYPLG  122 (122)
T ss_pred             hCCCEEEEEEEeCCCCcCCcEEEEEEEeccccccCCCccceEECc
Confidence             3568999999999998 999999999999999888889999873

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.86  E-value=1.8e-21  Score=176.26  Aligned_cols=116  Identities=25%  Similarity=0.360  Sum_probs=104.3

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~-~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      |+++|+|.|+...+.|.|+|++|+||++.+. .+.+||||++++.+     .++||+++++++||+|||+|.|.+...+ 
T Consensus         2 G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~~l   81 (125)
T cd04029           2 GEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPDKSRQSKRKTSIKRNTTNPVYNETLKYSISHSQL   81 (125)
T ss_pred             cEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcCCccccceEeeeeeCCCCCcccceEEEECCHHHh
Confidence            6789999999999999999999999998875 58899999999965     3579999999999999999999987533 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ....|.|.|||++.++ +++||++.|+|..+......+.|++|+
T Consensus        82 ~~~~L~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~~~w~~l~  125 (125)
T cd04029          82 ETRTLQLSVWHYDRFGRNTFLGEVEIPLDSWNFDSQHEECLPLH  125 (125)
T ss_pred             CCCEEEEEEEECCCCCCCcEEEEEEEeCCcccccCCcccEEECc
Confidence            3458999999999987 899999999999999988899999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=99.86  E-value=3.1e-21  Score=173.64  Aligned_cols=113  Identities=28%  Similarity=0.501  Sum_probs=100.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccC----CCCceEEEEEeecCCCC-C
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW----DSPNVLVIEVRDKDHFV-D  142 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~----e~~~tL~V~V~D~D~~s-D  142 (558)
                      ++|+|++|++|+.++..|.+||||+|++++.+++|+++++++||+|||+|.|.+...    .....|.|.|||++.++ |
T Consensus         1 ~~V~V~~A~~L~~~d~~g~~dpYv~v~l~~~~~kT~v~~~t~nP~Wne~f~F~v~~~~~~~~~~~~l~~~v~d~~~~~~d   80 (126)
T cd08682           1 VQVTVLQARGLLCKGKSGTNDAYVIIQLGKEKYSTSVKEKTTSPVWKEECSFELPGLLSGNGNRATLQLTVMHRNLLGLD   80 (126)
T ss_pred             CEEEEEECcCCcCCCCCcCCCceEEEEECCeeeeeeeecCCCCCEeCceEEEEecCcccCCCcCCEEEEEEEEccccCCC
Confidence            579999999999999999999999999999999999999999999999999998752    23568999999999987 9


Q ss_pred             CccEEEEEeccccc--CCCceeeeeecCC------CCceEEEEEEE
Q 008661          143 DTLGDCTINISDLR--DGQRHDMWIPLQN------IKIGRLHLAIT  180 (558)
Q Consensus       143 DfIGev~IpL~eL~--~~~~~e~W~~L~~------k~~GeL~LsL~  180 (558)
                      ++||++.|+|.++.  .+.....||+|.+      +..|+|+|+++
T Consensus        81 ~~iG~~~i~l~~l~~~~~~~~~~W~~L~~~~~~~~~~~Gei~l~~~  126 (126)
T cd08682          81 KFLGQVSIPLNDLDEDKGRRRTRWFKLESKPGKDDKERGEIEVDIQ  126 (126)
T ss_pred             ceeEEEEEEHHHhhccCCCcccEEEECcCCCCCCccccceEEEEeC
Confidence            99999999999987  5566789999975      24699999873

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=99.86  E-value=3.8e-21  Score=172.24  Aligned_cols=117  Identities=26%  Similarity=0.524  Sum_probs=106.2

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP  127 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~  127 (558)
                      .|++.|+|.|++..+.|.|+|++|++|++++..|.+||||++++.+   ..++|+++++++||+|||+|.|.+...+ ..
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~~   81 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPDRSNTKQSKIHKKTLNPEFDESFVFEVPPQELPK   81 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecCCCCcEeCceEcCCCCCCcccEEEEeCCHHHhCC
Confidence            3678899999999999999999999999999999999999999954   4689999999999999999999987532 24


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ..|.|+|||++.++ +++||++.++|.++..++..+.||+|+
T Consensus        82 ~~l~i~V~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08387          82 RTLEVLLYDFDQFSRDECIGVVELPLAEVDLSEKLDLWRKIQ  123 (124)
T ss_pred             CEEEEEEEECCCCCCCceeEEEEEecccccCCCCcceEEECc
Confidence            58999999999987 999999999999999888899999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.85  E-value=3.7e-21  Score=175.40  Aligned_cols=116  Identities=19%  Similarity=0.270  Sum_probs=102.7

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      |+++|+|.|+...+.|.|+|++|+||++++.. |.+||||++++.+     .++||+++++++||+|||+|.|.+...+ 
T Consensus         2 G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~~~~~~k~kT~v~~~t~nPvfNE~F~f~v~~~~l   81 (128)
T cd08392           2 GEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPDKSHNSKRKTAVKKGTVNPVFNETLKYVVEADLL   81 (128)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeCCcccceeecccccCCCCCccceEEEEEcCHHHh
Confidence            67899999999999999999999999999875 9999999999976     3679999999999999999999987533 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCC---CceeeeeecC
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG---QRHDMWIPLQ  168 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~---~~~e~W~~L~  168 (558)
                      ....|.|.|||++.++ +++||++.|+|.++...   .....||+|.
T Consensus        82 ~~~~L~v~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~~~W~~l~  128 (128)
T cd08392          82 SSRQLQVSVWHSRTLKRRVFLGEVLIPLADWDFEDTDSQRFLWYPLN  128 (128)
T ss_pred             CCcEEEEEEEeCCCCcCcceEEEEEEEcCCcccCCCCccccceEECc
Confidence            3469999999999987 89999999999999664   3567899983

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=99.85  E-value=4.3e-21  Score=174.49  Aligned_cols=114  Identities=20%  Similarity=0.312  Sum_probs=102.3

Q ss_pred             CceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           54 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        54 ~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      +++|+|.|++..+.|.|+|++|+||++++..+.+||||+++|.|      .+++|+++++++||+|||+|.|.+...+ .
T Consensus         2 ~i~~sL~Y~~~~~~L~V~V~~arnL~~~~~~~~~dpyVKv~Llp~~~~~~~~~kT~v~~~t~nPvfnE~F~f~v~~~~L~   81 (124)
T cd08680           2 QVQIGLRYDSGDSSLVISVEQLRNLSALSIPENSKVYVRVALLPCSSSTSCLFRTKALEDQDKPVFNEVFRVPISSTKLY   81 (124)
T ss_pred             eEEEEEEECCCCCEEEEEEeEecCCcccccCCCCCeEEEEEEccCCCCCCceEEcCccCCCCCCccccEEEEECCHHHhh
Confidence            57899999999999999999999999998889999999999975      3679999999999999999999988544 4


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCC-ceeeeeec
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPL  167 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~-~~e~W~~L  167 (558)
                      ..+|.|+|||++.++ +++||++.|+|.++.... ....||.|
T Consensus        82 ~~~L~~~V~~~~~~~~~~~lG~~~i~L~~~~~~~~~~~~Wy~l  124 (124)
T cd08680          82 QKTLQVDVCSVGPDQQEECLGGAQISLADFESSEEMSTKWYNL  124 (124)
T ss_pred             cCEEEEEEEeCCCCCceeEEEEEEEEhhhccCCCccccccccC
Confidence            569999999999987 999999999999996554 57889976

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=1.3e-20  Score=166.56  Aligned_cols=114  Identities=37%  Similarity=0.612  Sum_probs=104.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL  145 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI  145 (558)
                      +|+|+|++|++|+.++..+.+||||+++++..+++|+++++|+||.|||+|.|.+... ....|.|+|||++.++ +++|
T Consensus         1 ~~~V~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~v~v~d~~~~~~~~~i   79 (116)
T cd08376           1 VVTIVLVEGKNLPPMDDNGLSDPYVKFRLGNEKYKSKVCSKTLNPQWLEQFDLHLFDD-QSQILEIEVWDKDTGKKDEFI   79 (116)
T ss_pred             CEEEEEEEEECCCCCCCCCCCCcEEEEEECCEeEecccccCCCCCceeEEEEEEecCC-CCCEEEEEEEECCCCCCCCeE
Confidence            3789999999999999889999999999999999999999999999999999998753 3679999999999987 9999


Q ss_pred             EEEEEecccccCCCceeeeeecCCCCceEEEEEEEEE
Q 008661          146 GDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL  182 (558)
Q Consensus       146 Gev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~  182 (558)
                      |.+.++|.++..+...+.|++|++. .|+|++.+.|.
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~~-~G~~~~~~~~~  115 (116)
T cd08376          80 GRCEIDLSALPREQTHSLELELEDG-EGSLLLLLTLT  115 (116)
T ss_pred             EEEEEeHHHCCCCCceEEEEEccCC-CcEEEEEEEec
Confidence            9999999999988889999999864 69999999885

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.85  E-value=8.9e-21  Score=177.26  Aligned_cols=115  Identities=24%  Similarity=0.240  Sum_probs=102.6

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      -|+++|+|.|.  .+.|.|+|++|+||++++ ..|.+||||+++|.+     .+.||+++++|+||+|||+|.|.+..  
T Consensus        17 ~G~l~lsl~y~--~~~L~V~Vi~ArnL~~~~~~~g~sDPYVKv~Llp~~~~~~k~KT~v~kktlnPvfNE~F~f~v~l--   92 (146)
T cd04028          17 MGDIQLGLYDK--KGQLEVEVIRARGLVQKPGSKVLPAPYVKVYLLEGKKCIAKKKTKIARKTLDPLYQQQLVFDVSP--   92 (146)
T ss_pred             cceEEEEEEeC--CCEEEEEEEEeeCCCcccCCCCCcCCeEEEEEECCCccccceeceecCCCCCCccCCeEEEEEcC--
Confidence            57899999994  789999999999999875 578899999999966     37799999999999999999999983  


Q ss_pred             CCceEEEEEe-ecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          126 SPNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       126 ~~~tL~V~V~-D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      ...+|.|+|| |++.++ +++||++.|+|..+..+.....||+|.+.
T Consensus        93 ~~~~L~v~V~~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~Wy~L~~~  139 (146)
T cd04028          93 TGKTLQVIVWGDYGRMDKKVFMGVAQILLDDLDLSNLVIGWYKLFPT  139 (146)
T ss_pred             CCCEEEEEEEeCCCCCCCCceEEEEEEEcccccCCCCceeEEecCCc
Confidence            5779999999 688876 89999999999999888888999999863

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.85  E-value=1.5e-20  Score=167.91  Aligned_cols=115  Identities=29%  Similarity=0.511  Sum_probs=104.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT  144 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf  144 (558)
                      +|+|+|++|++|+..+..|.+||||+++++. ..++|+++++++||.|||+|.|.+..  ....|.|+|||++.++ +++
T Consensus         1 ~L~v~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~~~v~D~d~~~~~~~   78 (121)
T cd04042           1 QLDIHLKEGRNLAARDRGGTSDPYVKFKYGGKTVYKSKTIYKNLNPVWDEKFTLPIED--VTQPLYIKVFDYDRGLTDDF   78 (121)
T ss_pred             CeEEEEEEeeCCCCcCCCCCCCCeEEEEECCEEEEEeeeccCCCCCccceeEEEEecC--CCCeEEEEEEeCCCCCCCcc
Confidence            4899999999999999999999999999987 67899999999999999999999875  3578999999999996 999


Q ss_pred             cEEEEEecccccCCCceeeeeecCCC----CceEEEEEEEEEe
Q 008661          145 LGDCTINISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLE  183 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~e~W~~L~~k----~~GeL~LsL~y~p  183 (558)
                      ||.+.++|.++..+...+.|++|.+.    ..|+|+|.++|.|
T Consensus        79 iG~~~~~l~~l~~~~~~~~~~~L~~~~~~~~~G~l~l~~~~~~  121 (121)
T cd04042          79 MGSAFVDLSTLELNKPTEVKLKLEDPNSDEDLGYISLVVTLTP  121 (121)
T ss_pred             eEEEEEEHHHcCCCCCeEEEEECCCCCCccCceEEEEEEEECC
Confidence            99999999999988889999999753    4699999999865

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=99.85  E-value=7.2e-21  Score=170.22  Aligned_cols=116  Identities=31%  Similarity=0.509  Sum_probs=105.2

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CCc
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN  128 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~  128 (558)
                      |+++|++.|+...+.|+|+|++|++|+.++..+.+||||++++.+   .+++|+++++++||+|||+|.|.+...+ ...
T Consensus         3 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~~~   82 (124)
T cd08385           3 GKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPDKKKKFETKVHRKTLNPVFNETFTFKVPYSELGNK   82 (124)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcCCCCceecccCcCCCCCceeeeEEEeCCHHHhCCC
Confidence            678899999999999999999999999999889999999999965   4679999999999999999999987422 246


Q ss_pred             eEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          129 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       129 tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      .|.|+|||++.++ +++||++.++|.++..+...+.|++|.
T Consensus        83 ~l~~~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~~~W~~l~  123 (124)
T cd08385          83 TLVFSVYDFDRFSKHDLIGEVRVPLLTVDLGHVTEEWRDLE  123 (124)
T ss_pred             EEEEEEEeCCCCCCCceeEEEEEecCcccCCCCcceEEEcc
Confidence            8999999999987 899999999999998888889999986

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=99.84  E-value=9.7e-21  Score=171.10  Aligned_cols=116  Identities=20%  Similarity=0.288  Sum_probs=104.8

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEe-eccCC-CC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~-V~~~e-~~  127 (558)
                      |+++|++.|+...+.|.|+|++|+||++++..+.+||||++++.+   .+++|+++++ +||+|||+|.|. +...+ ..
T Consensus         3 G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~~~~~~kTkv~~~-~nP~fnE~F~f~~i~~~~l~~   81 (124)
T cd08389           3 GDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPSKKQRAKTKVQRG-PNPVFNETFTFSRVEPEELNN   81 (124)
T ss_pred             EEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccCCcceeecccccC-CCCcccCEEEECCCCHHHhcc
Confidence            678999999999999999999999999999889999999999866   5779999888 999999999998 65322 35


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      .+|.|+|||++.++ +++||++.|+|.++..+.....|++|++
T Consensus        82 ~~L~~~V~~~~~~~~~~~lG~~~i~L~~l~~~~~~~~w~~L~p  124 (124)
T cd08389          82 MALRFRLYGVERMRKERLIGEKVVPLSQLNLEGETTVWLTLEP  124 (124)
T ss_pred             CEEEEEEEECCCcccCceEEEEEEeccccCCCCCceEEEeCCC
Confidence            68999999999988 9999999999999998888999999974

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=99.84  E-value=1.3e-20  Score=171.26  Aligned_cols=117  Identities=26%  Similarity=0.315  Sum_probs=102.3

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEe-eccCC-C
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-S  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~-V~~~e-~  126 (558)
                      |+++|+|.|+...+.|+|+|++|++|+..+.. +.+||||++++.+   .+.||+++++++||+|||+|.|. +...+ .
T Consensus         3 G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~~~~~~kT~v~~~t~nP~wnE~F~f~~~~~~~~~   82 (128)
T cd08388           3 GTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPEKEHKVKTRVLRKTRNPVYDETFTFYGIPYNQLQ   82 (128)
T ss_pred             eEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCCcCceeeccEEcCCCCCceeeEEEEcccCHHHhC
Confidence            67899999999999999999999999998876 8999999999965   46799999999999999999994 54322 3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCC--CceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDG--QRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~--~~~e~W~~L~~  169 (558)
                      ...|.|.|||+|.++ +++||++.|+|.++...  +....|++|++
T Consensus        83 ~~~L~~~V~d~d~~~~d~~lG~~~i~L~~l~~~~~~~~~~~~~~~~  128 (128)
T cd08388          83 DLSLHFAVLSFDRYSRDDVIGEVVCPLAGADLLNEGELLVSREIQP  128 (128)
T ss_pred             CCEEEEEEEEcCCCCCCceeEEEEEeccccCCCCCceEEEEEeccC
Confidence            457999999999987 99999999999999665  56788999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=99.84  E-value=1.2e-20  Score=167.17  Aligned_cols=115  Identities=26%  Similarity=0.376  Sum_probs=103.0

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCc
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT  144 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVik-kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDf  144 (558)
                      |.|+|+|++|++|+..+..+.+||||+++++..+.+|+++. +++||+|||.|.|.+.. +..+.|.|+|||++..++++
T Consensus         1 g~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~-~~~~~l~i~v~d~~~~~~~~   79 (118)
T cd08681           1 GTLVVVVLKARNLPNKRKLDKQDPYCVLRIGGVTKKTKTDFRGGQHPEWDEELRFEITE-DKKPILKVAVFDDDKRKPDL   79 (118)
T ss_pred             CEEEEEEEEccCCCCCCcCCCCCceEEEEECCCccccccccCCCCCCccCceEEEEecC-CCCCEEEEEEEeCCCCCCcc
Confidence            67999999999999999999999999999999889999875 58999999999999985 34568999999999877899


Q ss_pred             cEEEEEecccccCCCceeeeeecCCC--CceEEEEEEEE
Q 008661          145 LGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITV  181 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~e~W~~L~~k--~~GeL~LsL~y  181 (558)
                      ||++.++|.++..+.....|++|...  ..|+|+|+++|
T Consensus        80 iG~~~~~l~~~~~~~~~~~w~~L~~~~~~~G~i~l~l~f  118 (118)
T cd08681          80 IGDTEVDLSPALKEGEFDDWYELTLKGRYAGEVYLELTF  118 (118)
T ss_pred             eEEEEEecHHHhhcCCCCCcEEeccCCcEeeEEEEEEEC
Confidence            99999999998777778999999753  56999999986

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=99.84  E-value=1.7e-20  Score=168.04  Aligned_cols=117  Identities=25%  Similarity=0.419  Sum_probs=105.3

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      .|+++|+|.|+...+.|+|+|++|++|+..+..+.+||||++++.+     .+++|+++++++||+|||+|.|.+...+ 
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~~~nP~wne~f~f~i~~~~l   81 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPDKSKSTRRKTSVKKDNLNPVFDETFEFPVSLEEL   81 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcCCCCCceEecccccCCCCCEECeEEEEecCHHHh
Confidence            4788999999999999999999999999999889999999999964     5789999999999999999999987422 


Q ss_pred             CCceEEEEEeecCCC--C-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 SPNVLVIEVRDKDHF--V-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~--s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ....|.|.|||++.+  + +++||++.++|.++..+.....||+|.
T Consensus        82 ~~~~l~i~v~~~~~~~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~  127 (127)
T cd04030          82 KRRTLDVAVKNSKSFLSREKKLLGQVLIDLSDLDLSKGFTQWYDLT  127 (127)
T ss_pred             cCCEEEEEEEECCcccCCCCceEEEEEEecccccccCCccceEECc
Confidence            246899999999885  4 899999999999998888889999984

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.84  E-value=1.8e-21  Score=179.71  Aligned_cols=110  Identities=9%  Similarity=-0.022  Sum_probs=89.2

Q ss_pred             EEEEEEEEEeccCCCC----------------CCCCcceEEecccCCCCceeeEEEeEecCCCC-CCccCCCceeec-CC
Q 008661          174 RLHLAITVLEESAKQG----------------VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFA-NETTDKGSFSSV-SS  235 (558)
Q Consensus       174 eL~LsL~y~p~~~~l~----------------lsDPyVKv~L~~~~~~~krlkKKKT~VkK~Tl-NPvwN~E~F~Fe-p~  235 (558)
                      +|+|+|+|.|.++++.                ..|||||++|   +..+++++||||+++++|+ ||+|| |+|.|. +.
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L---~~~~k~~~KkKT~v~k~t~~~P~fN-EsF~Fdv~~   77 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGM---FSTGGLLYKKKTRLVKSSNGQVKWG-ETMIFPVTQ   77 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEE---EECCCcceeecCccEECCCCCceec-ceEEEeCCc
Confidence            6889999999887622                2578999999   4558899999999999996 69999 999999 55


Q ss_pred             CCCCCCceEEEEEeccC--cccc-ceEEecC---CccccccCccccCCCCCcccceeec
Q 008661          236 EKSPKVADNFEPINIEG--QQET-GIWVHQP---GSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       236 e~l~~v~leveV~D~dG--~~e~-Gv~v~~p---gt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      + +..+++.++|||++.  .++. |.++.++   +.+..+||.+|+.+||||+||||.+
T Consensus        78 ~-~~~v~l~v~v~d~~~~~~n~~IG~v~lG~~~~~~~~~~hW~~m~~~pr~~ia~WH~L  135 (135)
T cd08692          78 Q-EHGIQFLIKLYSRSSVRRKHFLGQVWISSDSSSSEAVEQWKDTIANPEKVVTKWHSL  135 (135)
T ss_pred             h-hheeEEEEEEEeCCCCcCCceEEEEEECCccCCchhhhhHHHHHhCCCCeeeEeecC
Confidence            4 567999999999985  5665 7663333   3334699999999999999999964

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=99.84  E-value=3.2e-20  Score=166.00  Aligned_cols=117  Identities=26%  Similarity=0.502  Sum_probs=104.9

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC--CC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~  127 (558)
                      |++.|++.|....+.|.|+|++|++|+.++..+.+||||++++.+   .+.+|+++++++||.|||+|.|.+...+  ..
T Consensus         3 G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~~P~Wne~f~f~~~~~~~l~~   82 (125)
T cd08386           3 GRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKLQQ   82 (125)
T ss_pred             cEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCCCCcceeeeeecCCCCCccceeEEEcccCHHHhCC
Confidence            678899999999999999999999999999899999999999954   5789999999999999999999854321  24


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ..|.|+|||++.++ +++||++.++|.++..+.....|+.|++
T Consensus        83 ~~l~~~v~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~l~~  125 (125)
T cd08386          83 RVLYLQVLDYDRFSRNDPIGEVSLPLNKVDLTEEQTFWKDLKP  125 (125)
T ss_pred             CEEEEEEEeCCCCcCCcEeeEEEEecccccCCCCcceEEecCC
Confidence            58999999999987 8999999999999998888999999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.84  E-value=2.5e-20  Score=165.81  Aligned_cols=115  Identities=23%  Similarity=0.361  Sum_probs=103.1

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      |+++|+|.|+...+.|.|+|++|++|+.++ ..+.+||||++++.+     .+.+|+++++++||+|||+|.|.+...+ 
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~i~~~~l   80 (123)
T cd08521           1 GEIEFSLSYNYKTGSLEVHIKECRNLAYADEKKKRSNPYVKVYLLPDKSKQSKRKTSVKKNTTNPVFNETLKYHISKSQL   80 (123)
T ss_pred             CeEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCcEEEEEEecCCCcCceeeccccCCCCCCcccceEEEeCCHHHh
Confidence            568899999999999999999999999998 788999999999954     4679999999999999999999987532 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeec
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL  167 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L  167 (558)
                      ....|.|.|||++.++ +++||++.++|.++..+.....||+|
T Consensus        81 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~w~~l  123 (123)
T cd08521          81 ETRTLQLSVWHHDRFGRNTFLGEVEIPLDSWDLDSQQSEWYPL  123 (123)
T ss_pred             CCCEEEEEEEeCCCCcCCceeeEEEEecccccccCCCccEEEC
Confidence            2458999999999887 89999999999999888788999987

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=99.83  E-value=4.5e-20  Score=164.34  Aligned_cols=113  Identities=29%  Similarity=0.443  Sum_probs=103.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCc
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT  144 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDf  144 (558)
                      |+|+|++|++|+..+..+.+||||++++++   .+++|+++++++||+|||+|.|.+... ....|.|+|||++.+++++
T Consensus         2 L~V~vi~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~vv~~t~nP~Wne~f~f~i~~~-~~~~l~v~v~d~d~~~~~~   80 (119)
T cd04036           2 LTVRVLRATNITKGDLLSTPDCYVELWLPTASDEKKRTKTIKNSINPVWNETFEFRIQSQ-VKNVLELTVMDEDYVMDDH   80 (119)
T ss_pred             eEEEEEEeeCCCccCCCCCCCcEEEEEEcCCCCccCccceecCCCCCccceEEEEEeCcc-cCCEEEEEEEECCCCCCcc
Confidence            789999999999999889999999999964   678999999999999999999998753 4568999999999888899


Q ss_pred             cEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661          145 LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV  181 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y  181 (558)
                      ||++.++|.++..+.....|++|.++..|+|++++.+
T Consensus        81 iG~~~~~l~~l~~g~~~~~~~~L~~~~~g~l~~~~~~  117 (119)
T cd04036          81 LGTVLFDVSKLKLGEKVRVTFSLNPQGKEELEVEFLL  117 (119)
T ss_pred             cEEEEEEHHHCCCCCcEEEEEECCCCCCceEEEEEEe
Confidence            9999999999999989999999998889999998876

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=99.83  E-value=6.3e-20  Score=168.82  Aligned_cols=120  Identities=28%  Similarity=0.503  Sum_probs=107.2

Q ss_pred             ecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC
Q 008661           61 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF  140 (558)
Q Consensus        61 Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~  140 (558)
                      .....|.|+|+|++|++|+..+..|.+||||+++++...++|+++++++||.|||+|.|.+... ....|.|+|||++.+
T Consensus        10 ~~~~~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~~~~kT~vi~~t~nP~Wne~f~f~v~~~-~~~~l~i~V~D~d~~   88 (136)
T cd08375          10 RASGIGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGSQEHKTKVVSDTLNPKWNSSMQFFVKDL-EQDVLCITVFDRDFF   88 (136)
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECCEeeeccccCCCCCCccCceEEEEecCc-cCCEEEEEEEECCCC
Confidence            3457899999999999999999999999999999999999999999999999999999999752 356899999999998


Q ss_pred             C-CCccEEEEEecccccC-----CCceeeeeecCCCCceEEEEEEEE
Q 008661          141 V-DDTLGDCTINISDLRD-----GQRHDMWIPLQNIKIGRLHLAITV  181 (558)
Q Consensus       141 s-DDfIGev~IpL~eL~~-----~~~~e~W~~L~~k~~GeL~LsL~y  181 (558)
                      + |++||++.++|.++..     ......|+.|.....|+|+|++++
T Consensus        89 ~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~g~i~l~~~~  135 (136)
T cd08375          89 SPDDFLGRTEIRVADILKETKESKGPITKRLLLHEVPTGEVVVKLDL  135 (136)
T ss_pred             CCCCeeEEEEEEHHHhccccccCCCcEEEEeccccccceeEEEEEEe
Confidence            7 9999999999999876     334567888888889999999986

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=3.1e-20  Score=167.38  Aligned_cols=116  Identities=27%  Similarity=0.345  Sum_probs=102.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEeecCCC--CC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHF--VD  142 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~D~~--sD  142 (558)
                      .|+|+|++|++|++.+..+.+||||++++++++++|+++++++||+|||.|.|.+....  ....|.|+|||++.+  ++
T Consensus         1 ~L~V~vi~A~~L~~~d~~g~~dpyv~v~~~~~~~rT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~~~~~~~d   80 (127)
T cd04022           1 KLVVEVVDAQDLMPKDGQGSSSAYVELDFDGQKKRTRTKPKDLNPVWNEKLVFNVSDPSRLSNLVLEVYVYNDRRSGRRR   80 (127)
T ss_pred             CeEEEEEEeeCCCCCCCCCCcCcEEEEEECCEEecceeEcCCCCCccceEEEEEccCHHHccCCeEEEEEeeCCCCcCCC
Confidence            38999999999999998899999999999999999999999999999999999987422  235899999999987  48


Q ss_pred             CccEEEEEeccccc-CCCceeeeeecCCC-----CceEEEEEEEEE
Q 008661          143 DTLGDCTINISDLR-DGQRHDMWIPLQNI-----KIGRLHLAITVL  182 (558)
Q Consensus       143 DfIGev~IpL~eL~-~~~~~e~W~~L~~k-----~~GeL~LsL~y~  182 (558)
                      ++||++.++|.++. .+.....||+|+..     .+|+|+|++.+.
T Consensus        81 ~~lG~v~i~l~~l~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~~  126 (127)
T cd04022          81 SFLGRVRISGTSFVPPSEAVVQRYPLEKRGLFSRVRGEIGLKVYIT  126 (127)
T ss_pred             CeeeEEEEcHHHcCCCCCccceEeEeeeCCCCCCccEEEEEEEEEc
Confidence            99999999999987 45667899999863     579999999875

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=99.83  E-value=2.9e-20  Score=165.81  Aligned_cols=115  Identities=31%  Similarity=0.439  Sum_probs=100.6

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccC-C-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW-D-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~-e-  125 (558)
                      |+++++|.|+...+.|+|+|++|++|+.++..+.+||||++++.+     .+++|+++++++||+|||+|.|.+... + 
T Consensus         3 G~l~~~l~~~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~l   82 (125)
T cd04031           3 GRIQIQLWYDKVTSQLIVTVLQARDLPPRDDGSLRNPYVKVYLLPDRSEKSKRRTKTVKKTLNPEWNQTFEYSNVRRETL   82 (125)
T ss_pred             EEEEEEEEEeCCCCEEEEEEEEecCCCCcCCCCCCCCEEEEEEccCCCccccccccccCCCCCCccccEEEEcccCHHHh
Confidence            678899999999999999999999999999889999999999975     577999999999999999999986431 1 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ....|.|+|||++.++ +++||++.++|.+.. ......||+|+
T Consensus        83 ~~~~l~~~V~d~~~~~~~~~iG~~~i~l~~~~-~~~~~~W~~L~  125 (125)
T cd04031          83 KERTLEVTVWDYDRDGENDFLGEVVIDLADAL-LDDEPHWYPLQ  125 (125)
T ss_pred             CCCEEEEEEEeCCCCCCCcEeeEEEEeccccc-ccCCcceEECc
Confidence            3468999999999987 899999999999843 33457899985

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=99.83  E-value=1.7e-20  Score=168.75  Aligned_cols=112  Identities=22%  Similarity=0.369  Sum_probs=97.7

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~  127 (558)
                      |++.|++.|  ..+.|.|+|++|+||++++ .|.+||||+++|.+     .+.+|+++++++||+|||+|.|.+...+..
T Consensus         1 G~l~l~~~~--~~~~L~V~Vi~ar~L~~~~-~g~~dpYVkv~l~p~~~~~~~~kT~v~~~t~~P~~nE~F~f~v~~~~~~   77 (119)
T cd08685           1 GQLKLSIEG--QNRKLTLHVLEAKGLRSTN-SGTCNSYVKISLSPDKEVRFRQKTSTVPDSANPLFHETFSFDVNERDYQ   77 (119)
T ss_pred             CEEEEEEEE--cCCEEEEEEEEEECCCCCC-CCCCCeeEEEEEEeCCCCcceEeCccccCCCCCccccEEEEEcChHHhC
Confidence            356677776  6789999999999999998 88999999999976     366999999999999999999998754445


Q ss_pred             ceEEEEEeecCCCC--CCccEEEEEecccccCCCceeeeeec
Q 008661          128 NVLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPL  167 (558)
Q Consensus       128 ~tL~V~V~D~D~~s--DDfIGev~IpL~eL~~~~~~e~W~~L  167 (558)
                      ..|.|.|||++...  +++||++.|+|.++..+.....||.|
T Consensus        78 ~~l~v~V~~~~~~~~~~~~lG~~~i~l~~~~~~~~~~~Wy~l  119 (119)
T cd08685          78 KRLLVTVWNKLSKSRDSGLLGCMSFGVKSIVNQKEISGWYYL  119 (119)
T ss_pred             CEEEEEEECCCCCcCCCEEEEEEEecHHHhccCccccceEeC
Confidence            67999999999874  68999999999999877778999986

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=99.83  E-value=5e-20  Score=164.11  Aligned_cols=117  Identities=26%  Similarity=0.400  Sum_probs=105.0

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~  127 (558)
                      |+++++|.|+...+.|.|+|++|++|+.++ ..+.+||||++++.+   ...+|+++++++||+|||+|.|.+.... ..
T Consensus         1 G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~~dpyV~v~l~~~~~~~~~T~v~~~~~~P~wne~f~f~i~~~~l~~   80 (123)
T cd08390           1 GRLWFSVQYDLEEEQLTVSLIKARNLPPRTKDVAHCDPFVKVCLLPDERRSLQSKVKRKTQNPNFDETFVFQVSFKELQR   80 (123)
T ss_pred             CEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCCcEEEEEEeeCCCCceEeeeEcCCCCCccceEEEEEcCHHHhcc
Confidence            568899999999999999999999999998 688999999999954   4679999999999999999999987532 23


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ..|.|.|||++.++ +++||++.++|.++........|++|++
T Consensus        81 ~~l~i~v~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~w~~L~~  123 (123)
T cd08390          81 RTLRLSVYDVDRFSRHCIIGHVLFPLKDLDLVKGGVVWRDLEP  123 (123)
T ss_pred             cEEEEEEEECCcCCCCcEEEEEEEeccceecCCCceEEEeCCC
Confidence            58999999999987 8999999999999999888899999973

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=99.83  E-value=6.5e-20  Score=162.16  Aligned_cols=115  Identities=34%  Similarity=0.613  Sum_probs=104.0

Q ss_pred             eEEEEEEEEecCCCCCCC------CCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC
Q 008661           66 AYARVEVVEASDMKPSDL------NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH  139 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~------~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~  139 (558)
                      |.|+|+|++|++|+.++.      .|.+||||++++++..++|+++++++||.|||+|.|.+... ..+.|.|+|||++.
T Consensus         1 g~l~v~v~~a~~L~~~d~~~~~~~~g~~dPyv~v~~~~~~~kT~~~~~t~~P~W~e~f~~~v~~~-~~~~l~i~v~d~~~   79 (121)
T cd08391           1 GVLRIHVIEAQDLVAKDKFVGGLVKGKSDPYVIVRVGAQTFKSKVIKENLNPKWNEVYEAVVDEV-PGQELEIELFDEDP   79 (121)
T ss_pred             CeEEEEEEEccCCcccccccccCCCCCcCCEEEEEECCEeEEccccCCCCCCcccceEEEEeCCC-CCCEEEEEEEecCC
Confidence            579999999999998875      36899999999999999999999999999999999998742 45799999999998


Q ss_pred             CCCCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661          140 FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV  181 (558)
Q Consensus       140 ~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y  181 (558)
                      .++++||.+.++|.++..+...+.||+|.+...|+|+|.+.+
T Consensus        80 ~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~~~G~~~~~~~~  121 (121)
T cd08391          80 DKDDFLGRLSIDLGSVEKKGFIDEWLPLEDVKSGRLHLKLEW  121 (121)
T ss_pred             CCCCcEEEEEEEHHHhcccCccceEEECcCCCCceEEEEEeC
Confidence            888999999999999988777899999998788999998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.83  E-value=4.6e-21  Score=177.47  Aligned_cols=112  Identities=19%  Similarity=0.162  Sum_probs=92.6

Q ss_pred             ceEEEEEEEEEeccCCC------------------CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec
Q 008661          172 IGRLHLAITVLEESAKQ------------------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~l------------------~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe  233 (558)
                      .|+|+|+|+|.+.++++                  ..+|||||++|   +.++++++|+||.++++++||+|| |.|.|.
T Consensus         1 ~Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l---~~~~~k~~kkkT~v~k~t~nPvfN-E~f~F~   76 (138)
T cd08407           1 TGEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTL---KHQNAKLKKKQTKRAKHKINPVWN-EMIMFE   76 (138)
T ss_pred             CCEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEE---EcCCcccceeccceeeCCCCCccc-cEEEEE
Confidence            48999999998877651                  11699999999   445678899999999999999999 999999


Q ss_pred             -CCCCCCCCceEEEEEeccCc--ccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661          234 -SSEKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       234 -p~e~l~~v~leveV~D~dG~--~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                       +.+++...++.++|||+++.  ++. |..   ....|.+ .+||.+|+.+||+|+||||.+
T Consensus        77 v~~~~L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~~g~~-~~hW~~ml~~p~~~va~WH~L  137 (138)
T cd08407          77 LPSELLAASSVELEVLNQDSPGQSLPLGRCSLGLHTSGTE-RQHWEEMLDNPRRQIAMWHQL  137 (138)
T ss_pred             CCHHHhCccEEEEEEEeCCCCcCcceeceEEecCcCCCcH-HHHHHHHHhCCCCchhEEEEC
Confidence             98999999999999999943  443 544   2333443 589999999999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.83  E-value=9.6e-20  Score=208.62  Aligned_cols=230  Identities=17%  Similarity=0.343  Sum_probs=178.0

Q ss_pred             eeeec--cCCCCCccCCccHHHHHHHHHHHHHHhccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCC
Q 008661            2 TVKPI--FTHGLDVTEFPGIAGWLDKLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMK   79 (558)
Q Consensus         2 tlkPl--~t~G~DVm~iPGLs~fl~~lI~~al~~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~   79 (558)
                      .++|+  .++|+|||+||||+.||+++|..+++.|+++|++++|++.+...+.        -..+.|+|.|+|.+|++|.
T Consensus       378 ~l~Plg~~~~g~dI~~iPGL~~fI~~~i~~~l~pml~~Pnsl~idi~~~m~~~--------s~~aIGVv~vkI~sa~~lk  449 (1227)
T COG5038         378 ILVPLGGDFFGVDIFAIPGLSRFIQEIINSTLGPMLLPPNSLTIDISQIMAGD--------SGTAIGVVEVKIKSAEGLK  449 (1227)
T ss_pred             EEEEcCCCccceeEecCccHHHHHHHHHHhhcCCeeeCCceEEEcHHHhhccc--------cCCeeEEEEEEEeeccCcc
Confidence            67899  5679999999999999999999999999999999999999877662        3457899999999999999


Q ss_pred             CCC--CCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCccEEEEEecccc
Q 008661           80 PSD--LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL  155 (558)
Q Consensus        80 ~~D--~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL  155 (558)
                      ..+  .++..|||+.+.+.. ...+|+++++++||+|||+|.+.+..  ..+.|.|+|||++.++ |.++|.+.++|..|
T Consensus       450 ~~d~~i~~~vDpyit~~~~~r~~gkT~v~~nt~nPvwNEt~Yi~lns--~~d~L~LslyD~n~~~sd~vvG~~~l~L~~L  527 (1227)
T COG5038         450 KSDSTINGTVDPYITVTFSDRVIGKTRVKKNTLNPVWNETFYILLNS--FTDPLNLSLYDFNSFKSDKVVGSTQLDLALL  527 (1227)
T ss_pred             cccccccCCCCceEEEEeccccCCccceeeccCCccccceEEEEecc--cCCceeEEEEeccccCCcceeeeEEechHHh
Confidence            888  689999999999755 45699999999999999999999986  4678999999988887 99999999999998


Q ss_pred             cCCCcee-eeeecC--CCCceEEEEEEEEEeccCCCC--------CCCC-------------------------cceEEe
Q 008661          156 RDGQRHD-MWIPLQ--NIKIGRLHLAITVLEESAKQG--------VDSP-------------------------CDGGTL  199 (558)
Q Consensus       156 ~~~~~~e-~W~~L~--~k~~GeL~LsL~y~p~~~~l~--------lsDP-------------------------yVKv~L  199 (558)
                      ....... ..+.+.  .+..|+|...+.|.|..+...        +.|.                         ++.+++
T Consensus       528 ~~~~~~~ne~~e~~~~~k~vGrL~yDl~ffp~~e~k~~~~~s~e~~ed~n~GI~k~tl~~~~~l~~~~~~~~~~~a~l~~  607 (1227)
T COG5038         528 HQNPVKKNELYEFLRNTKNVGRLTYDLRFFPVIEDKKELKGSVEPLEDSNTGILKVTLREVKALDELSSKKDNKSAELYT  607 (1227)
T ss_pred             hhccccccceeeeeccCccceEEEEeeeeecccCCccccccccCCcccCCcceeEEEeeccccccCccccccceeEEEEe
Confidence            7654432 233332  346799999999988754310        0111                         133333


Q ss_pred             cccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661          200 NKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI  250 (558)
Q Consensus       200 ~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~  250 (558)
                      +.     +  ..+-|...+.+-+|.|| +.+... -.......+.+.+.|.
T Consensus       608 ~~-----k--eV~st~~~k~t~~~~wn-~~~~~~-v~~~~ns~~~~~~~d~  649 (1227)
T COG5038         608 NA-----K--EVYSTGKLKFTNHPSWN-LQYNVL-VTDRKNSSIKVVTFDV  649 (1227)
T ss_pred             cc-----e--EEeccceeeeccCCcee-eecceE-eccCcceeEEEEeccc
Confidence            21     1  22234556888999999 554433 5555667777776664

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.83  E-value=6.2e-20  Score=167.54  Aligned_cols=109  Identities=28%  Similarity=0.472  Sum_probs=98.2

Q ss_pred             EEEEEEEEecC---CCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC---
Q 008661           67 YARVEVVEASD---MKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF---  140 (558)
Q Consensus        67 ~L~VtVieArd---L~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~---  140 (558)
                      .|.|+|++|++   |+.+|..|.+||||+|.+++++.+|+++++++||+|||+|.|.+..  ....|.|+|||++.+   
T Consensus         1 ~L~v~v~~A~~~~~l~~~d~~g~sDPYv~i~~g~~~~rTk~~~~~~nP~WnE~f~f~v~~--~~~~l~v~V~d~d~~~~~   78 (126)
T cd08379           1 ILEVGILGAQGLDVLRAKDGRGSTDAYCVAKYGPKWVRTRTVEDSSNPRWNEQYTWPVYD--PCTVLTVGVFDNSQSHWK   78 (126)
T ss_pred             CeEEEEEEeECCccccccccCCCCCeeEEEEECCEEeEcCcccCCCCCcceeEEEEEecC--CCCEEEEEEEECCCcccc
Confidence            38999999999   8889999999999999999999999999999999999999999975  345899999999987   


Q ss_pred             ----CCCccEEEEEecccccCCCceeeeeecCC------CCceEEEE
Q 008661          141 ----VDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHL  177 (558)
Q Consensus       141 ----sDDfIGev~IpL~eL~~~~~~e~W~~L~~------k~~GeL~L  177 (558)
                          +|++||++.|+|..+..+.....||+|..      +..|+|++
T Consensus        79 ~~~~~dd~lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~g~l~~  125 (126)
T cd08379          79 EAVQPDVLIGKVRIRLSTLEDDRVYAHSYPLLSLNPSGVKKMGELEC  125 (126)
T ss_pred             ccCCCCceEEEEEEEHHHccCCCEEeeEEEeEeCCCCCccCCcEEEe
Confidence                59999999999999999888899999984      34577764

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=99.83  E-value=9.3e-20  Score=164.18  Aligned_cols=112  Identities=30%  Similarity=0.513  Sum_probs=99.5

Q ss_pred             EEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661           68 ARVEVVEASDMKPSD-LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT  144 (558)
Q Consensus        68 L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf  144 (558)
                      |+|+|++|++|++++ ..|.+||||+++++.. .++|+++++|+||+|||+|.|.+..  ....|.|.|||++.++ +++
T Consensus         2 l~v~v~~a~~L~~~~~~~g~sDpYv~v~l~~~~~~kT~v~~kt~~P~WnE~F~f~v~~--~~~~l~~~v~d~~~~~~~~~   79 (121)
T cd08401           2 LKIKIGEAKNLPPRSGPNKMRDCYCTVNLDQEEVFRTKTVEKSLCPFFGEDFYFEIPR--TFRHLSFYIYDRDVLRRDSV   79 (121)
T ss_pred             eEEEEEEccCCCCCCCCCCCcCcEEEEEECCccEEEeeEEECCCCCccCCeEEEEcCC--CCCEEEEEEEECCCCCCCce
Confidence            789999999999974 4678999999999764 6899999999999999999999985  3469999999999997 999


Q ss_pred             cEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661          145 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV  181 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y  181 (558)
                      ||.+.++|+++..+...+.||+|++.     ..|+|+|++++
T Consensus        80 iG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~G~i~l~~~~  121 (121)
T cd08401          80 IGKVAIKKEDLHKYYGKDTWFPLQPVDADSEVQGKVHLELRL  121 (121)
T ss_pred             EEEEEEEHHHccCCCCcEeeEEEEccCCCCcccEEEEEEEEC
Confidence            99999999999888888999999863     37999999864

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=99.82  E-value=1e-19  Score=162.62  Aligned_cols=115  Identities=35%  Similarity=0.593  Sum_probs=102.6

Q ss_pred             eEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661           66 AYARVEVVEASDMKPSDL--NGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D  142 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~--~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D  142 (558)
                      |.|+|+|++|++|+..+.  .+.+||||+++++..+++|+++++++||.|||+|.|.+.. ...+.|.|+|||++.++ +
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~~~dPyv~v~~~~~~~kT~~~~~t~~P~Wne~f~~~~~~-~~~~~l~i~v~d~~~~~~~   79 (128)
T cd04024           1 GVLRVHVVEAKDLAAKDRSGKGKSDPYAILSVGAQRFKTQTIPNTLNPKWNYWCEFPIFS-AQNQLLKLILWDKDRFAGK   79 (128)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCcCCeEEEEECCEEEecceecCCcCCccCCcEEEEecC-CCCCEEEEEEEECCCCCCC
Confidence            679999999999999998  8899999999999999999999999999999999999985 24579999999999986 9


Q ss_pred             CccEEEEEecccccC---CCceeeeeecCCC-------CceEEEEEEEE
Q 008661          143 DTLGDCTINISDLRD---GQRHDMWIPLQNI-------KIGRLHLAITV  181 (558)
Q Consensus       143 DfIGev~IpL~eL~~---~~~~e~W~~L~~k-------~~GeL~LsL~y  181 (558)
                      ++||++.++|.++..   ......||+|.+.       ..|+|+|+++|
T Consensus        80 ~~lG~~~i~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~~~G~i~l~~~~  128 (128)
T cd04024          80 DYLGEFDIALEEVFADGKTGQSDKWITLKSTRPGKTSVVSGEIHLQFSW  128 (128)
T ss_pred             CcceEEEEEHHHhhcccccCccceeEEccCcccCccccccceEEEEEEC
Confidence            999999999999873   3446899999864       47999999874

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=3.3e-21  Score=197.21  Aligned_cols=235  Identities=21%  Similarity=0.223  Sum_probs=189.9

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccC--
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW--  124 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~--  124 (558)
                      .+.+||.+.|+.....+.++|..|.+|++++.++..|||+++.+++     .+++|++..+++||.|+|+..+.....  
T Consensus        79 lg~~~~~~~y~~~~~~~~~tl~~a~~lk~~~~~~~~d~~~~~~llpga~kl~slr~~t~~n~lN~~w~etev~~~i~~~~  158 (362)
T KOG1013|consen   79 LGALEFELLYDSESRMLDTTLDRAKGLKPMDINGLADPYVKLHLLPGAGKLNSLRTKTTRNTLNPEWNETEVYEGITDDD  158 (362)
T ss_pred             ccchhhhhhhhhhhhhcceeechhcccchhhhhhhcchHHhhhcccchhhhhhhhHHhhccCcCcceeccceecccccch
Confidence            5678999999999999999999999999999999999999999988     457899999999999998866654321  


Q ss_pred             CCCceEEEEEeecCCCC-CCccEEEEEecccccCCCce--eeeeecCC----------CCceEEEEEEEEEeccCC----
Q 008661          125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN----------IKIGRLHLAITVLEESAK----  187 (558)
Q Consensus       125 e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~--e~W~~L~~----------k~~GeL~LsL~y~p~~~~----  187 (558)
                      -..+.+++.|+|.+.+. ++++|+..++|..|...+..  ..||.-.-          ..+|+|.+++.|-.....    
T Consensus       159 ~~~K~~Rk~vcdn~~~~~~~sqGq~r~~lkKl~p~q~k~f~~cl~~~lp~~rad~~~~E~rg~i~isl~~~s~~~~l~vt  238 (362)
T KOG1013|consen  159 THLKVLRKVVCDNDKKTHNESQGQSRVSLKKLKPLQRKSFNICLEKSLPSERADRDEDEERGAILISLAYSSTTPGLIVT  238 (362)
T ss_pred             hhhhhhheeeccCcccccccCcccchhhhhccChhhcchhhhhhhccCCcccccccchhhccceeeeeccCcCCCceEEE
Confidence            13568999999999998 89999999999998766542  33443211          357999999998665433    


Q ss_pred             ------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEecc-C-
Q 008661          188 ------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE-G-  252 (558)
Q Consensus       188 ------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~d-G-  252 (558)
                                  -+-+||||+.++.   .+..+.-|+||.+.|+|+||.|| +.|.|+ ....|....+.+.|||++ | 
T Consensus       239 ~iRc~~l~ssDsng~sDpyvS~~l~---pdv~~~fkkKt~~~K~t~~p~fd-~~~~~~i~pgdLa~~kv~lsvgd~~~G~  314 (362)
T KOG1013|consen  239 IIRCSHLASSDSNGYSDPYVSQRLS---PDVGKKFKKKTQQKKKTLNPEFD-EEFFYDIGPGDLAYKKVALSVGDYDIGK  314 (362)
T ss_pred             EEEeeeeeccccCCCCCccceeecC---CCcchhhcccCcchhccCCcccc-ccccccCCccchhcceEEEeecccCCCc
Confidence                        1228999999995   45677778899999999999999 888888 778889999999999998 4 


Q ss_pred             cccc-ceE--EecCCccccccCccccCCCCCcccceeecCC
Q 008661          253 QQET-GIW--VHQPGSEVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       253 ~~e~-Gv~--v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                      .+.. |..  ....-+++.+||-.++.+++-+...|||+..
T Consensus       315 s~d~~GG~~~g~~rr~~v~~h~gr~~~~~~a~~~~ss~l~~  355 (362)
T KOG1013|consen  315 SNDSIGGSMLGGYRRGEVHKHWGRCLFDQDANFERSSGLET  355 (362)
T ss_pred             CccCCCcccccccccchhhcCcccccccccccccccccccc
Confidence            3333 332  1223334569999999999999999999984

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.81  E-value=2e-19  Score=168.38  Aligned_cols=117  Identities=30%  Similarity=0.507  Sum_probs=102.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT  144 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikk-TlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf  144 (558)
                      .|+|+|++|++|++++..|.+||||+++++++..+|+++.+ |+||+|||.|.|.+.. .....|.|+|||++..+ +++
T Consensus         1 ~L~V~Vi~A~~L~~~d~~g~sDPYV~v~l~~~~~kTk~~~~~t~nP~WNE~F~f~v~~-~~~~~l~v~V~d~~~~~~dd~   79 (150)
T cd04019           1 YLRVTVIEAQDLVPSDKNRVPEVFVKAQLGNQVLRTRPSQTRNGNPSWNEELMFVAAE-PFEDHLILSVEDRVGPNKDEP   79 (150)
T ss_pred             CEEEEEEEeECCCCCCCCCCCCeEEEEEECCEEeeeEeccCCCCCCcccCcEEEEecC-ccCCeEEEEEEEecCCCCCCe
Confidence            38999999999999999999999999999999999999876 6999999999999874 23468999999999886 999


Q ss_pred             cEEEEEecccccCC----CceeeeeecCCC-----------CceEEEEEEEEEec
Q 008661          145 LGDCTINISDLRDG----QRHDMWIPLQNI-----------KIGRLHLAITVLEE  184 (558)
Q Consensus       145 IGev~IpL~eL~~~----~~~e~W~~L~~k-----------~~GeL~LsL~y~p~  184 (558)
                      ||++.|+|.++..+    .....||+|.+.           ..|+|+|+|+|...
T Consensus        80 lG~v~i~L~~l~~~~~~~~~~~~W~~L~~~~~~~~~~k~~k~~g~l~l~i~~~~~  134 (150)
T cd04019          80 LGRAVIPLNDIERRVDDRPVPSRWFSLERPGGAMEQKKKRKFASRIHLRLCLDGG  134 (150)
T ss_pred             EEEEEEEHHHCcccCCCCccCCceEECcCCCCcccccccCcccccEEEEEEecCc
Confidence            99999999998643    446899999863           23999999999754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=99.81  E-value=3.4e-19  Score=160.62  Aligned_cols=114  Identities=23%  Similarity=0.406  Sum_probs=102.1

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT  144 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp--~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf  144 (558)
                      |.|+|++|++|+.  ..|.+||||+++++.  .+++|+++++|+||.|||.|.|.+..  ....|.|+|||++.++ +++
T Consensus         1 l~v~v~~A~~L~~--~~g~~dpyv~v~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~~~~~~~   76 (126)
T cd08678           1 LLVKNIKANGLSE--AAGSSNPYCVLEMDEPPQKYQSSTQKNTSNPFWDEHFLFELSP--NSKELLFEVYDNGKKSDSKF   76 (126)
T ss_pred             CEEEEEEecCCCC--CCCCcCCEEEEEECCCCcEEEeEEEecCCCCccCceEEEEeCC--CCCEEEEEEEECCCCCCCce
Confidence            6799999999987  678999999999974  67899999999999999999999864  3568999999999987 999


Q ss_pred             cEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEecc
Q 008661          145 LGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEES  185 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~~  185 (558)
                      ||++.++|.++........|++|.+.      ..|+|+|.+.|.+.+
T Consensus        77 lG~~~i~l~~l~~~~~~~~~~~L~~~~~~~~~~~G~l~l~~~~~~~~  123 (126)
T cd08678          77 LGLAIVPFDELRKNPSGRQIFPLQGRPYEGDSVSGSITVEFLFMEPA  123 (126)
T ss_pred             EEEEEEeHHHhccCCceeEEEEecCCCCCCCCcceEEEEEEEEeccc
Confidence            99999999999988888899999853      479999999998765

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=99.81  E-value=2.8e-19  Score=159.94  Aligned_cols=112  Identities=29%  Similarity=0.518  Sum_probs=100.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL  145 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI  145 (558)
                      +|+|+|++|++|+.++..+.+||||+++++...++|+++++++||.|||+|.|.+... ....|.|+|||++.++ +++|
T Consensus         1 ~L~v~vi~a~~L~~~d~~~~~DPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~-~~~~l~~~v~d~~~~~~~~~i   79 (123)
T cd04025           1 RLRCHVLEARDLAPKDRNGTSDPFVRVFYNGQTLETSVVKKSCYPRWNEVFEFELMEG-ADSPLSVEVWDWDLVSKNDFL   79 (123)
T ss_pred             CEEEEEEEeeCCCCCCCCCCcCceEEEEECCEEEeceeecCCCCCccCcEEEEEcCCC-CCCEEEEEEEECCCCCCCcEe
Confidence            4899999999999999889999999999999899999999999999999999999853 3568999999999987 8999


Q ss_pred             EEEEEecccccCCCceeeeeecCC---------CCceEEEEEE
Q 008661          146 GDCTINISDLRDGQRHDMWIPLQN---------IKIGRLHLAI  179 (558)
Q Consensus       146 Gev~IpL~eL~~~~~~e~W~~L~~---------k~~GeL~LsL  179 (558)
                      |++.++|.++..+.....||.|.+         ...|.|+|.|
T Consensus        80 G~~~~~l~~l~~~~~~~~w~~L~~~~~~~~~~~~~~G~l~~~~  122 (123)
T cd04025          80 GKVVFSIQTLQQAKQEEGWFRLLPDPRAEEESGGNLGSLRLKV  122 (123)
T ss_pred             EEEEEEHHHcccCCCCCCEEECCCCCCCCccccCceEEEEEEe
Confidence            999999999987777899999975         2458888876

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.80  E-value=6.9e-20  Score=169.01  Aligned_cols=115  Identities=18%  Similarity=0.198  Sum_probs=100.3

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      |+++|+|.|++..+.|.|+|++|++|++++..|.+||||+++|.+     .+.+|+++++++||+|||+|.|.+...+ .
T Consensus         2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~~~~~~~k~kT~v~k~t~nP~~nE~f~F~v~~~~l~   81 (136)
T cd08406           2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQDGRKISKKKTSVKRDDTNPIFNEAMIFSVPAIVLQ   81 (136)
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCccccccCCccccCCCCCeeceeEEEECCHHHhC
Confidence            678999999999999999999999999999899999999999965     2568999999999999999999987533 3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ...|.|+|||+|.++ +++||++.|+...  .++..++|..+..
T Consensus        82 ~~~l~~~V~~~d~~~~~~~iG~v~lg~~~--~g~~~~hW~~ml~  123 (136)
T cd08406          82 DLSLRVTVAESTEDGKTPNVGHVIIGPAA--SGMGLSHWNQMLA  123 (136)
T ss_pred             CcEEEEEEEeCCCCCCCCeeEEEEECCCC--CChhHHHHHHHHH
Confidence            568999999999987 9999999998764  4555777877754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.80  E-value=3e-19  Score=161.74  Aligned_cols=102  Identities=29%  Similarity=0.486  Sum_probs=90.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEe-C---C---eEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEeec
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQL-G---P---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDK  137 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~L-g---p---~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~  137 (558)
                      .|+|+|++|++|+..+ .|.+||||+|++ +   +   ++++|+++++|+||+|||+|.|.+...+  ....|.|+|||+
T Consensus         1 kL~V~Vi~A~~L~~~d-~g~~DPYVkV~l~g~~~~~k~~k~kTkv~~~tlnPvwNE~f~F~v~~~~~~~~~~L~~~V~D~   79 (120)
T cd08395           1 KVTVKVVAANDLKWQT-TGMFRPFVEVNLIGPHLSDKKRKFATKSKNNNWSPKYNETFQFILGNEDDPESYELHICVKDY   79 (120)
T ss_pred             CEEEEEEECcCCCccc-CCCCCCEEEEEEecCCCcccccEeeeEEecCCCCCccCcEEEEEeeCcCCCceeEEEEEEEEe
Confidence            3899999999999988 499999999998 3   1   3578999999999999999999998522  345799999999


Q ss_pred             CCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          138 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       138 D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      |..+ +++||++.++|..+..++....|++|..
T Consensus        80 d~~~~dd~IG~~~l~l~~~~~~~~~~~w~~L~~  112 (120)
T cd08395          80 CFARDDRLVGVTVLQLRDIAQAGSCACWLPLGR  112 (120)
T ss_pred             cccCCCCEEEEEEEEHHHCcCCCcEEEEEECcC
Confidence            9887 8999999999999999998999999975

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08407 C2B_Synaptotagmin-13 C2 domain second repeat present in Synaptotagmin 13

Probab=99.80  E-value=1.1e-19  Score=168.21  Aligned_cols=114  Identities=19%  Similarity=0.281  Sum_probs=98.3

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCC--CCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDL--NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~--~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      |++.|+|.|.+..+.|.|.|++|+||++++.  .+.+||||+|+|.+     .+.||+++++++||+|||+|.|.++..+
T Consensus         2 Gel~~sL~Y~~~~~~L~V~V~karnL~~~d~~~~~~~DpYVKv~l~~~~~k~~kkkT~v~k~t~nPvfNE~f~F~v~~~~   81 (138)
T cd08407           2 GEVLLSISYLPAANRLLVVVIKAKNLHSDQLKLLLGIDVSVKVTLKHQNAKLKKKQTKRAKHKINPVWNEMIMFELPSEL   81 (138)
T ss_pred             CEEEEEEEEeCCCCeEEEEEEEecCCCccccCCCCCCCeEEEEEEEcCCcccceeccceeeCCCCCccccEEEEECCHHH
Confidence            6789999999999999999999999999984  35599999999976     3569999999999999999999998533


Q ss_pred             -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                       ...+|.|+|||+|.++ +++||++.+++..  .+...++|..+.
T Consensus        82 L~~~~L~~~V~d~d~~~~~d~iG~v~lg~~~--~g~~~~hW~~ml  124 (138)
T cd08407          82 LAASSVELEVLNQDSPGQSLPLGRCSLGLHT--SGTERQHWEEML  124 (138)
T ss_pred             hCccEEEEEEEeCCCCcCcceeceEEecCcC--CCcHHHHHHHHH
Confidence             3558999999999998 9999999999985  444566777664

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recy

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=99.80  E-value=1.2e-18  Score=157.72  Aligned_cols=115  Identities=27%  Similarity=0.428  Sum_probs=98.2

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D  142 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D  142 (558)
                      ...|+|+|++|++|+..   +.+||||+|+++. ...+|+++ +++||.|||+|.|.+... ....|.|.|||++.++ +
T Consensus         3 ~~~L~V~Vi~A~~L~~~---~~~DPYv~v~l~~~~~~kT~v~-~~~nP~WnE~f~f~~~~~-~~~~l~v~v~d~~~~~~d   77 (126)
T cd08400           3 VRSLQLNVLEAHKLPVK---HVPHPYCVISLNEVKVARTKVR-EGPNPVWSEEFVFDDLPP-DVNSFTISLSNKAKRSKD   77 (126)
T ss_pred             eeEEEEEEEEeeCCCCC---CCCCeeEEEEECCEeEEEeecC-CCCCCccCCEEEEecCCC-CcCEEEEEEEECCCCCCC
Confidence            35799999999999874   4789999999987 44688875 689999999999986542 2357999999999987 9


Q ss_pred             CccEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEec
Q 008661          143 DTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEE  184 (558)
Q Consensus       143 DfIGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~  184 (558)
                      ++||++.|+|..+..+...+.||+|.+.      ..|+|+|+|+|.+.
T Consensus        78 ~~iG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~~~~G~i~l~l~~~~~  125 (126)
T cd08400          78 SEIAEVTVQLSKLQNGQETDEWYPLSSASPLKGGEWGSLRIRARYSHE  125 (126)
T ss_pred             CeEEEEEEEHhHccCCCcccEeEEcccCCCCCCCcCcEEEEEEEEEcc
Confidence            9999999999999988888999999753      35999999999864

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=99.80  E-value=1e-18  Score=164.83  Aligned_cols=116  Identities=22%  Similarity=0.371  Sum_probs=102.4

Q ss_pred             ceEEEEEEEEecCCCCCC------------------------------CCCCCCcEEEEEeCCe-EEEeeeecCCCCCcc
Q 008661           65 VAYARVEVVEASDMKPSD------------------------------LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKW  113 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D------------------------------~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvW  113 (558)
                      .|.|.|+|++|++|+.+|                              ..|.+||||+|+++.. ..+|+++++++||.|
T Consensus         6 hG~L~v~I~eA~~L~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~sDPYv~V~l~~~~~~rT~v~~~~~nP~W   85 (158)
T cd04015           6 HGTLDVTIYEADNLPNMDMFSEKLRRFFSKLVGCSEPTLKRPSSHRHVGKITSDPYATVDLAGARVARTRVIENSENPVW   85 (158)
T ss_pred             eeeeEEEEEEeccCCCcccccchhhHHHHHHHhhcccccccccccccCCCCCcCeEEEEEECCeEeeEEEEeCCCCCCcc
Confidence            589999999999999988                              2467999999999875 469999999999999


Q ss_pred             ceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeecCC------CCceEEEEEEEEE
Q 008661          114 HEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGRLHLAITVL  182 (558)
Q Consensus       114 nEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~------k~~GeL~LsL~y~  182 (558)
                      ||+|.|.+..  ..+.|.|.|||+|.+++++||.+.++|.++..+...+.|++|.+      ...|.|+|+++|.
T Consensus        86 nE~F~~~~~~--~~~~l~~~V~d~d~~~~~~IG~~~i~l~~l~~g~~~~~w~~L~~~~~~~~~~~~~l~v~~~f~  158 (158)
T cd04015          86 NESFHIYCAH--YASHVEFTVKDNDVVGAQLIGRAYIPVEDLLSGEPVEGWLPILDSNGKPPKPGAKIRVSLQFT  158 (158)
T ss_pred             ceEEEEEccC--CCCEEEEEEEeCCCcCCcEEEEEEEEhHHccCCCCcceEEECcCCCCCCCCCCCEEEEEEEEC
Confidence            9999999864  34689999999999888999999999999998888999999964      2358999999883

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=99.80  E-value=5.8e-19  Score=159.01  Aligned_cols=110  Identities=30%  Similarity=0.465  Sum_probs=96.9

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccE
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG  146 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIG  146 (558)
                      +|+|+|++|++|+.+    .+||||+++++..+.+|+++++++||+|||+|.|.+... ....|.|+|||++.+++++||
T Consensus         1 ~L~V~Vi~a~~L~~~----~~Dpyv~v~l~~~~~kT~v~~~t~nP~Wne~F~f~~~~~-~~~~L~~~v~d~d~~~~~~lG   75 (121)
T cd08378           1 YLYVRVVKARGLPAN----SNDPVVEVKLGNYKGSTKAIERTSNPEWNQVFAFSKDRL-QGSTLEVSVWDKDKAKDDFLG   75 (121)
T ss_pred             CEEEEEEEecCCCcc----cCCCEEEEEECCccccccccCCCCCCccceEEEEEcCCC-cCCEEEEEEEeCCCCcCceee
Confidence            489999999999887    799999999999999999999999999999999998642 456899999999988899999


Q ss_pred             EEEEecccccCCC-----ceeeeeecCCC----CceEEEEEEEE
Q 008661          147 DCTINISDLRDGQ-----RHDMWIPLQNI----KIGRLHLAITV  181 (558)
Q Consensus       147 ev~IpL~eL~~~~-----~~e~W~~L~~k----~~GeL~LsL~y  181 (558)
                      ++.++|.++....     ....||+|...    ..|+|+|+|+|
T Consensus        76 ~~~i~l~~l~~~~~~~~~~~~~W~~L~~~~~~~~~G~i~l~~~~  119 (121)
T cd08378          76 GVCFDLSEVPTRVPPDSPLAPQWYRLEDKKGGRVGGELMLAVWF  119 (121)
T ss_pred             eEEEEhHhCcCCCCCCCCCCcceEEccCCCCCccceEEEEEEEe
Confidence            9999999986532     35689999874    35999999987

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=99.80  E-value=5.4e-19  Score=159.74  Aligned_cols=114  Identities=33%  Similarity=0.473  Sum_probs=99.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH  139 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-------k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~  139 (558)
                      .|+|+|++|++|+.++..+.+||||++++.+.       .++|+++++|+||.|||+|.|.+..  ....|.|+|||++.
T Consensus         1 ~L~v~Vi~a~~L~~~d~~~~~Dpyv~v~~~~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~~~v~d~~~   78 (133)
T cd04033           1 ILRVKVLAGIDLAKKDIFGASDPYVKISLYDPDGNGEIDSVQTKTIKKTLNPKWNEEFFFRVNP--REHRLLFEVFDENR   78 (133)
T ss_pred             CEEEEEEEeECCCcccCCCCcCcEEEEEEECCCCCCcccceeeeEEcCCCCCcEeeEEEEEEcC--CCCEEEEEEEECCC
Confidence            38999999999999998899999999999654       5799999999999999999999875  34689999999999


Q ss_pred             CC-CCccEEEEEecccccCCCc------eeeeeecCCC-----CceEEEEEEEEE
Q 008661          140 FV-DDTLGDCTINISDLRDGQR------HDMWIPLQNI-----KIGRLHLAITVL  182 (558)
Q Consensus       140 ~s-DDfIGev~IpL~eL~~~~~------~e~W~~L~~k-----~~GeL~LsL~y~  182 (558)
                      ++ +++||++.+++.++.....      ...||+|++.     ..|+|+|++.|+
T Consensus        79 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~G~l~~~~~~~  133 (133)
T cd04033          79 LTRDDFLGQVEVPLNNLPTETPGNERRYTFKDYLLRPRSSKSRVKGHLRLYMAYL  133 (133)
T ss_pred             CCCCCeeEEEEEEHHHCCCcCccccccccchheeeeecCCCCcceeEEEEEEeeC
Confidence            87 8999999999999876543      4689999852     479999999884

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.79  E-value=3.3e-19  Score=161.56  Aligned_cols=114  Identities=29%  Similarity=0.438  Sum_probs=99.7

Q ss_pred             CceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661           54 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP  127 (558)
Q Consensus        54 ~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~  127 (558)
                      +++|+|.|+...+.|.|+|++|++|++++..+.+||||++++.+     .+.+|+++++++||.|||+|.|.+...+ ..
T Consensus         1 ~i~~~l~y~~~~~~L~V~Vi~a~~L~~~d~~~~~DpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~l~~   80 (133)
T cd08384           1 KILVSLMYNTQRRGLIVGIIRCVNLAAMDANGYSDPFVKLYLKPDAGKKSKHKTQVKKKTLNPEFNEEFFYDIKHSDLAK   80 (133)
T ss_pred             CEEEEEEEcCCCCEEEEEEEEEcCCCCcCCCCCCCcEEEEEEEcCCCccCCceeeeEeccCCCCcccEEEEECCHHHhCC
Confidence            35799999999999999999999999999889999999999964     3679999999999999999999987432 24


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ..|.|+|||++..+ +++||++.+++..  .++....|+++..
T Consensus        81 ~~l~~~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~~l~  121 (133)
T cd08384          81 KTLEITVWDKDIGKSNDYIGGLQLGINA--KGERLRHWLDCLK  121 (133)
T ss_pred             CEEEEEEEeCCCCCCccEEEEEEEecCC--CCchHHHHHHHHh
Confidence            68999999999887 8999999999986  3456678998854

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.79  E-value=7.7e-19  Score=166.33  Aligned_cols=117  Identities=21%  Similarity=0.288  Sum_probs=102.5

Q ss_pred             CCceeEeeecC------------CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccce
Q 008661           53 PGNWFSVDVKE------------PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE  115 (558)
Q Consensus        53 ~~l~fSL~Yd~------------~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnE  115 (558)
                      |.+.|+|.|.+            ..+.|.|+|++|++|+..+..+.+||||++++.+     .+++|+++++|+||+|||
T Consensus         2 G~l~~~l~y~~~~~~~~~~~~~~~~g~L~V~Vi~A~nL~~~d~~g~~DPYVkv~l~~~~~~~~~~kT~vi~~t~nP~WnE   81 (162)
T cd04020           2 GELKVALKYVPPESEGALKSKKPSTGELHVWVKEAKNLPALKSGGTSDSFVKCYLLPDKSKKSKQKTPVVKKSVNPVWNH   81 (162)
T ss_pred             ceEEEEEEecCccccccccccCCCCceEEEEEEeeeCCCCCCCCCCCCCEEEEEEEcCCCCCcceeCCccCCCCCCCCCC
Confidence            57889999998            5589999999999999999899999999999843     578999999999999999


Q ss_pred             EEEEeeccC-C-CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          116 EFNIPISTW-D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       116 tF~F~V~~~-e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      +|.|.+... + ....|.|+|||++.++ +++||++.+++.++......+.|+.|.+
T Consensus        82 ~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l~~~~~~~~~~~w~~~~~  138 (162)
T cd04020          82 TFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGLGTGKSYGQAVDWMDSTG  138 (162)
T ss_pred             EEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeCCccccCCCccccccCCh
Confidence            999985421 1 2458999999999998 9999999999999987777888998865

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=99.79  E-value=2.5e-18  Score=152.11  Aligned_cols=112  Identities=30%  Similarity=0.569  Sum_probs=100.0

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT  144 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf  144 (558)
                      |.|.|+|++|++|+.++..+.+||||+++++...++|+++++++||.|||+|.|.+..  ....|.|+|||++.++ +++
T Consensus         1 g~l~v~v~~a~~L~~~~~~~~~dPyv~v~~~~~~~~T~~~~~t~nP~W~e~f~~~~~~--~~~~l~~~v~d~~~~~~~~~   78 (119)
T cd08377           1 GFLQVKVIRASGLAAADIGGKSDPFCVLELVNARLQTHTIYKTLNPEWNKIFTFPIKD--IHDVLEVTVYDEDKDKKPEF   78 (119)
T ss_pred             CEEEEEEEeeeCCCCCCCCCCCCcEEEEEECCEeeecceecCCcCCccCcEEEEEecC--cCCEEEEEEEECCCCCCCce
Confidence            6799999999999999989999999999999888999999999999999999999864  3579999999999876 999


Q ss_pred             cEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661          145 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV  181 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y  181 (558)
                      ||++.++|.++..+  ...|+.|...     ..|+|+|++.+
T Consensus        79 iG~~~~~l~~~~~~--~~~~~~l~~~~~~~~~~G~i~l~~~~  118 (119)
T cd08377          79 LGKVAIPLLSIKNG--ERKWYALKDKKLRTRAKGSILLEMDV  118 (119)
T ss_pred             eeEEEEEHHHCCCC--CceEEECcccCCCCceeeEEEEEEEe
Confidence            99999999998755  4679999753     47999999875

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=99.78  E-value=3.2e-18  Score=155.31  Aligned_cols=115  Identities=32%  Similarity=0.561  Sum_probs=101.7

Q ss_pred             ceEEEEEEEEecCCCCCCCC----------CCCCcEEEEEeCCeE-EEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661           65 VAYARVEVVEASDMKPSDLN----------GLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE  133 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~----------G~sDPYVkV~Lgp~k-~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~  133 (558)
                      .|.|+|+|++|++|+..+..          +.+||||+++++..+ .+|+++++|+||.|||+|.|.+..   ...|.|.
T Consensus         3 ~g~l~V~v~~a~~L~~~d~~~~~~~~~~~~g~~dpyv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~---~~~l~~~   79 (132)
T cd04014           3 TGTLKIKICEAVDLKPTDWSTRHAVPKKGSQLLDPYVSIDVDDTHIGKTSTKPKTNSPVWNEEFTTEVHN---GRNLELT   79 (132)
T ss_pred             ceEEEEEEEEecCCCCCCchhhhcccccCccCcCcEEEEEECCEEEeEEeEcCCCCCCCcceeEEEEcCC---CCEEEEE
Confidence            47899999999999988863          689999999998854 699999999999999999999973   4689999


Q ss_pred             EeecCCCC-CCccEEEEEecccccC--CCceeeeeecCCCCceEEEEEEEEEec
Q 008661          134 VRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQNIKIGRLHLAITVLEE  184 (558)
Q Consensus       134 V~D~D~~s-DDfIGev~IpL~eL~~--~~~~e~W~~L~~k~~GeL~LsL~y~p~  184 (558)
                      |||++.++ +++||.+.++|.++..  +...+.|++|+  ..|+|+|.++|...
T Consensus        80 v~d~~~~~~~~~iG~~~i~l~~l~~~~~~~~~~w~~L~--~~G~l~l~~~~~~~  131 (132)
T cd04014          80 VFHDAAIGPDDFVANCTISFEDLIQRGSGSFDLWVDLE--PQGKLHVKIELKGS  131 (132)
T ss_pred             EEeCCCCCCCceEEEEEEEhHHhcccCCCcccEEEEcc--CCcEEEEEEEEecC
Confidence            99999887 8999999999999987  56689999998  47999999998753

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=99.78  E-value=1.9e-18  Score=155.06  Aligned_cols=111  Identities=26%  Similarity=0.505  Sum_probs=97.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL  145 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI  145 (558)
                      |.|+|++|++|++++..|.+||||+++++.. ..+|+++++++||.|||.|.|.+..  ....|.|.|||++.++ +++|
T Consensus         2 l~v~vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~--~~~~l~v~v~d~~~~~~d~~i   79 (121)
T cd04054           2 LYIRIVEGKNLPAKDITGSSDPYCIVKVDNEVIIRTATVWKTLNPFWGEEYTVHLPP--GFHTVSFYVLDEDTLSRDDVI   79 (121)
T ss_pred             EEEEEEEeeCCcCCCCCCCCCceEEEEECCEeeeeeeeEcCCCCCcccceEEEeeCC--CCCEEEEEEEECCCCCCCCEE
Confidence            8899999999999999999999999999774 4799999999999999999999874  3468999999999987 9999


Q ss_pred             EEEEEecccccCC-CceeeeeecCCC-----CceEEEEEEE
Q 008661          146 GDCTINISDLRDG-QRHDMWIPLQNI-----KIGRLHLAIT  180 (558)
Q Consensus       146 Gev~IpL~eL~~~-~~~e~W~~L~~k-----~~GeL~LsL~  180 (558)
                      |++.+++..+... ...+.|++|++.     ..|+|+|.++
T Consensus        80 G~~~~~~~~~~~~~~~~~~W~~L~~~~~~~~~~G~i~l~~~  120 (121)
T cd04054          80 GKVSLTREVISAHPRGIDGWMNLTEVDPDEEVQGEIHLELS  120 (121)
T ss_pred             EEEEEcHHHhccCCCCCCcEEECeeeCCCCccccEEEEEEE
Confidence            9999999988654 347899999763     3799998875

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=99.78  E-value=4.9e-18  Score=153.41  Aligned_cols=117  Identities=23%  Similarity=0.325  Sum_probs=102.0

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCC
Q 008661           64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD  143 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDD  143 (558)
                      +..+|+|+|++|++|+..+..|.+||||+++++.+.++|+++++++||+|||.|.|.+..  ....|.|+|||++.++|+
T Consensus         1 ~~~~~~V~v~~A~~L~~~d~~g~~dPyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~--~~~~l~i~V~d~~~~~d~   78 (126)
T cd04046           1 PQVVTQVHVHSAEGLSKQDSGGGADPYVIIKCEGESVRSPVQKDTLSPEFDTQAIFYRKK--PRSPIKIQVWNSNLLCDE   78 (126)
T ss_pred             CcEEEEEEEEeCcCCCCCCCCCCcCccEEEEECCEEEEeCccCCCCCCcccceEEEEecC--CCCEEEEEEEECCCCCCC
Confidence            357899999999999999989999999999999999999999999999999999998875  467899999999988899


Q ss_pred             ccEEEEEecccccCCCceeeeeecCC-------CCceEEEEEEEEEec
Q 008661          144 TLGDCTINISDLRDGQRHDMWIPLQN-------IKIGRLHLAITVLEE  184 (558)
Q Consensus       144 fIGev~IpL~eL~~~~~~e~W~~L~~-------k~~GeL~LsL~y~p~  184 (558)
                      +||.+.+++..+..  ....|++|+.       ...|+|.|.+.+.+.
T Consensus        79 ~lG~~~~~l~~~~~--~~~~~~~l~~~~~~~~~~~~G~i~~~~~~~~~  124 (126)
T cd04046          79 FLGQATLSADPNDS--QTLRTLPLRKRGRDAAGEVPGTISVKVTSSDD  124 (126)
T ss_pred             ceEEEEEecccCCC--cCceEEEcccCCCCCCCCCCCEEEEEEEEccc
Confidence            99999999998643  4456777742       356999999988764

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=99.78  E-value=2.5e-18  Score=152.69  Aligned_cols=117  Identities=24%  Similarity=0.378  Sum_probs=100.6

Q ss_pred             ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC--eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661           65 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV  141 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp--~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s  141 (558)
                      .|.|+|+|++|++|+..+ ..+.+||||+++++.  ..++|+++++++||.|||.|.|.+..  ..+.|.|+|||++.++
T Consensus         1 ~g~l~v~v~~a~~L~~~~~~~~~~dpyv~v~~~~~~~~~kT~~~~~~~~P~Wne~~~~~v~~--~~~~l~~~v~d~~~~~   78 (124)
T cd04044           1 IGVLAVTIKSARGLKGSDIIGGTVDPYVTFSISNRRELARTKVKKDTSNPVWNETKYILVNS--LTEPLNLTVYDFNDKR   78 (124)
T ss_pred             CeEEEEEEEcccCCCcccccCCCCCCeEEEEECCCCcceEeeeecCCCCCcceEEEEEEeCC--CCCEEEEEEEecCCCC
Confidence            378999999999999765 456799999999987  78999999999999999999999873  4679999999999986


Q ss_pred             -CCccEEEEEecccccCCCcee-eeeecC--CCCceEEEEEEEEEe
Q 008661          142 -DDTLGDCTINISDLRDGQRHD-MWIPLQ--NIKIGRLHLAITVLE  183 (558)
Q Consensus       142 -DDfIGev~IpL~eL~~~~~~e-~W~~L~--~k~~GeL~LsL~y~p  183 (558)
                       +++||.+.++|.++....... .|+.|.  ++..|+|+++|+|.|
T Consensus        79 ~d~~iG~~~~~l~~l~~~~~~~~~~~~~~~~~k~~G~i~~~l~~~p  124 (124)
T cd04044          79 KDKLIGTAEFDLSSLLQNPEQENLTKNLLRNGKPVGELNYDLRFFP  124 (124)
T ss_pred             CCceeEEEEEEHHHhccCccccCcchhhhcCCccceEEEEEEEeCC
Confidence             999999999999998776654 444443  356899999999975

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.77  E-value=6.9e-19  Score=160.59  Aligned_cols=115  Identities=24%  Similarity=0.344  Sum_probs=101.1

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      |++++++.|+...+.|.|+|++|++|+.++..|.+||||++++.+     .+.+|+++++++||.|||+|.|.+.... .
T Consensus         2 G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~k~t~nP~w~e~F~f~v~~~~~~   81 (136)
T cd08404           2 GELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYYGKKRISKKKTHVKKCTLNPVFNESFVFDIPSEELE   81 (136)
T ss_pred             CeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEcCCceeeeEcCccccCCCCCccCceEEEECCHHHhC
Confidence            678899999999999999999999999999999999999999954     3578999999999999999999987432 3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ...|.|+|||++.++ +++||++.+++..  .+.....|++|..
T Consensus        82 ~~~l~~~v~d~d~~~~~~~iG~~~~~~~~--~~~~~~~w~~l~~  123 (136)
T cd08404          82 DISVEFLVLDSDRVTKNEVIGRLVLGPKA--SGSGGHHWKEVCN  123 (136)
T ss_pred             CCEEEEEEEECCCCCCCccEEEEEECCcC--CCchHHHHHHHHh
Confidence            458999999999997 9999999999998  3556788998864

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.77  E-value=7.4e-19  Score=160.21  Aligned_cols=116  Identities=25%  Similarity=0.404  Sum_probs=100.2

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~-  126 (558)
                      |++.|+|.|.+..+.|.|+|++|++|+.++..+.+||||+|++.+     .+++|+++++++||.|||+|.|.+...+. 
T Consensus         2 G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~l~   81 (136)
T cd08402           2 GDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKRTLNPYYNESFSFEVPFEQIQ   81 (136)
T ss_pred             cEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEECCcccceeeccceeCCCCCcccceEEEECCHHHhC
Confidence            678899999999999999999999999999999999999999953     35789999999999999999999874222 


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      ...|.|+|||++.++ +++||++.|++...  +.....|++|...
T Consensus        82 ~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~--~~~~~~W~~~~~~  124 (136)
T cd08402          82 KVHLIVTVLDYDRIGKNDPIGKVVLGCNAT--GAELRHWSDMLAS  124 (136)
T ss_pred             CCEEEEEEEeCCCCCCCceeEEEEECCccC--ChHHHHHHHHHhC
Confidence            348999999999988 89999999999864  4456778887643

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=99.77  E-value=6.3e-18  Score=154.44  Aligned_cols=118  Identities=25%  Similarity=0.420  Sum_probs=99.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC--------CCceEEEEEeecC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--------SPNVLVIEVRDKD  138 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e--------~~~tL~V~V~D~D  138 (558)
                      +|+|+|++|++|+.+|..|.+||||+++++..+.+|+++++|+||.|||.|.|.+....        ....|.|+|||+|
T Consensus         2 ~l~v~V~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d   81 (135)
T cd04017           2 QLRAYIYQARDLLAADKSGLSDPFARVSFLNQSQETEVIKETLSPTWDQTLIFDEVELYGSPEEIAQNPPLVVVELFDQD   81 (135)
T ss_pred             EEEEEEEEeecCcCCCCCCCCCCEEEEEECCeeeEeeeEcCCCCCccCcEEEEeeeeccCChHHhhcCCCEEEEEEEeCc
Confidence            68999999999999999999999999999999999999999999999999999754211        2357999999999


Q ss_pred             CCC-CCccEEEEE-eccccc---CCCceeeeeecCC--CCceEEEEEEEEEec
Q 008661          139 HFV-DDTLGDCTI-NISDLR---DGQRHDMWIPLQN--IKIGRLHLAITVLEE  184 (558)
Q Consensus       139 ~~s-DDfIGev~I-pL~eL~---~~~~~e~W~~L~~--k~~GeL~LsL~y~p~  184 (558)
                      .++ |++||++.+ ++..+.   .......|++|..  ...|+|+|++.+.+.
T Consensus        82 ~~~~d~~iG~~~i~~~~~~~~~~~~~~~~~W~~L~~~~~~~Geil~~~~~~~~  134 (135)
T cd04017          82 SVGKDEFLGRSVAKPLVKLDLEEDFPPKLQWFPIYKGGQSAGELLAAFELIEV  134 (135)
T ss_pred             CCCCCccceEEEeeeeeecccCCCCCCCceEEEeecCCCchhheeEEeEEEEe
Confidence            987 899999987 444443   2456789999974  357999999999874

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.77  E-value=8.4e-19  Score=161.89  Aligned_cols=116  Identities=20%  Similarity=0.367  Sum_probs=99.8

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      ++++++|.|+...+.|.|+|++|+||+.++..+.+||||++++.+      .+++|+++++++||+|||+|.|.+...+ 
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~~~~~~~~~kT~v~~~t~nPvfnEtF~f~i~~~~l   81 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNSDGQEISKSKTSIRRGQPDPEFKETFVFQVALFQL   81 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeCCCcceeeccceeecCCCCCcEeeeEEEECCHHHh
Confidence            467899999999999999999999999999999999999999965      2569999999999999999999998533 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ...+|.|.|||++.++ +++||++.+++..... ...++|+.+..
T Consensus        82 ~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~-~~~~hW~~~l~  125 (138)
T cd08408          82 SEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGE-EEEEHWNEMKE  125 (138)
T ss_pred             CccEEEEEEEECCCCCCCcEEEEEEECCcCCCc-hHHHHHHHHHh
Confidence            3569999999999887 9999999999885432 23467887753

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=99.77  E-value=2.3e-18  Score=161.25  Aligned_cols=101  Identities=30%  Similarity=0.363  Sum_probs=88.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeec------------cC-C-CC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIS------------TW-D-SP  127 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~------------~~-e-~~  127 (558)
                      .|+|+|++|++|+.  .+|.+||||+|++.+     .+.+|+++++|+||+|||+|.|.+.            .. + ..
T Consensus         1 kL~V~Vi~ArnL~~--~~g~sDPYV~V~l~~~~~k~~~~kT~v~~~t~nP~wNE~F~F~v~~~~~~~~~~~~~~~~~~~~   78 (148)
T cd04010           1 KLSVRVIECSDLAL--KNGTCDPYASVTLIYSNKKQDTKRTKVKKKTNNPQFDEAFYFDVTIDSSPEKKQFEMPEEDAEK   78 (148)
T ss_pred             CEEEEEEeCcCCCC--CCCCCCceEEEEEeCCcccCcccCCccEeCCCCCccceEEEEEEecccccccccccCCcccccE
Confidence            38999999999988  578999999999976     5779999999999999999999984            11 1 23


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCC-CceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDG-QRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~-~~~e~W~~L~~  169 (558)
                      ..|.|.|||++.++ ++|||++.|+|..+..+ .....||+|++
T Consensus        79 ~~L~i~V~d~~~~~~ddfLG~v~i~l~~l~~~~~~~~~W~~L~~  122 (148)
T cd04010          79 LELRVDLWHASMGGGDVFLGEVRIPLRGLDLQAGSHQAWYFLQP  122 (148)
T ss_pred             EEEEEEEEcCCCCCCCceeEEEEEecccccccCCcCcceeecCC
Confidence            57999999999986 99999999999999876 56789999975

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.77  E-value=1.1e-18  Score=158.64  Aligned_cols=115  Identities=24%  Similarity=0.432  Sum_probs=98.6

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      |+++|++.|.+..+.|+|+|++|++|++++..|.+||||++++.+     .+.+|+++++++||.|||+|.|.+.... .
T Consensus         1 g~l~~~~~y~~~~~~L~V~v~~A~~L~~~d~~g~~dpyvkv~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~i~~~~~~   80 (134)
T cd08403           1 GELMFSLCYLPTAGRLTLTIIKARNLKAMDITGFSDPYVKVSLMCEGRRLKKKKTSVKKNTLNPTYNEALVFDVPPENVD   80 (134)
T ss_pred             CeEEEEEEEcCCCCEEEEEEEEeeCCCccccCCCCCceEEEEEEeCCcccceecCCcccCCCCCcccceEEEECCHHHhC
Confidence            568899999999999999999999999999999999999999853     3679999999999999999999986422 2


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ...|.|+|||++.++ +++||++.+++..  .+.....|+++..
T Consensus        81 ~~~l~~~v~d~~~~~~~~~IG~~~l~~~~--~~~~~~~w~~~~~  122 (134)
T cd08403          81 NVSLIIAVVDYDRVGHNELIGVCRVGPNA--DGQGREHWNEMLA  122 (134)
T ss_pred             CCEEEEEEEECCCCCCCceeEEEEECCCC--CCchHHHHHHHHH
Confidence            347999999999998 9999999999873  3445677887743

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=99.76  E-value=1e-17  Score=150.07  Aligned_cols=115  Identities=29%  Similarity=0.501  Sum_probs=100.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D  142 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D  142 (558)
                      .|+|+|++|++|+..+..+.+||||++++.+   ..++|+++++++||.|||+|.|.+... ....|.|+|||++.++ +
T Consensus         2 ~~~V~v~~a~~L~~~~~~~~~Dpyv~v~~~~~~~~~~kT~~~~~t~~P~Wne~f~f~i~~~-~~~~L~i~v~d~d~~~~~   80 (126)
T cd04043           2 LFTIRIVRAENLKADSSNGLSDPYVTLVDTNGKRRIAKTRTIYDTLNPRWDEEFELEVPAG-EPLWISATVWDRSFVGKH   80 (126)
T ss_pred             EEEEEEEEeECCCCCCCCCCCCceEEEEECCCCeeeecccEecCCCCCcccceEEEEcCCC-CCCEEEEEEEECCCCCCC
Confidence            5899999999999999999999999999864   467999999999999999999999853 4568999999999986 8


Q ss_pred             CccEEEEEecccccC---CCceeeeeecCCCCceEEEEEEEEEec
Q 008661          143 DTLGDCTINISDLRD---GQRHDMWIPLQNIKIGRLHLAITVLEE  184 (558)
Q Consensus       143 DfIGev~IpL~eL~~---~~~~e~W~~L~~k~~GeL~LsL~y~p~  184 (558)
                      ++||++.++|..+..   +...+.|++|.+  .|+|+|.++|...
T Consensus        81 ~~iG~~~i~l~~~~~~~~~~~~~~w~~l~~--~g~i~l~~~~~~~  123 (126)
T cd04043          81 DLCGRASLKLDPKRFGDDGLPREIWLDLDT--QGRLLLRVSMEGE  123 (126)
T ss_pred             ceEEEEEEecCHHHcCCCCCCceEEEEcCC--CCeEEEEEEEeee
Confidence            999999999998643   345789999985  7999999998654

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.76  E-value=1.1e-18  Score=159.01  Aligned_cols=115  Identities=26%  Similarity=0.390  Sum_probs=99.4

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      |+++|+|.|++..+.|.|+|++|++|+.++..+.+||||++++.+     .+++|+++++++||.|||+|.|.+.... .
T Consensus         2 G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~~~kT~v~~~t~~P~wne~F~f~i~~~~~~   81 (136)
T cd08405           2 GELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMYKDKRVEKKKTVIKKRTLNPVFNESFIFNIPLERLR   81 (136)
T ss_pred             cEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEeCCCccccccCcceeCCCCCcccceEEEeCCHHHhC
Confidence            678999999999999999999999999999899999999999843     3578999999999999999999986422 2


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ...|.|+|||++.++ +++||++.+++...  +...+.|++|..
T Consensus        82 ~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~--~~~~~~w~~~~~  123 (136)
T cd08405          82 ETTLIITVMDKDRLSRNDLIGKIYLGWKSG--GLELKHWKDMLS  123 (136)
T ss_pred             CCEEEEEEEECCCCCCCcEeEEEEECCccC--CchHHHHHHHHh
Confidence            458999999999987 89999999999986  444667777653

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=99.76  E-value=2.9e-18  Score=162.30  Aligned_cols=97  Identities=34%  Similarity=0.587  Sum_probs=89.7

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-C
Q 008661           64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-D  142 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-D  142 (558)
                      ..|.|+|+|++|.+|..+|..+++||||.+.+++++.+|+++.+++||+|||.|.|.+..  ....|.+.|||+|.++ |
T Consensus         4 ~vGLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~q~lkT~~v~~n~NPeWNe~ltf~v~d--~~~~lkv~VyD~D~fs~d   81 (168)
T KOG1030|consen    4 LVGLLRVRVKRGKNLAIRDFLGSSDPYVVLELGNQKLKTRVVYKNLNPEWNEELTFTVKD--PNTPLKVTVYDKDTFSSD   81 (168)
T ss_pred             cceEEEEEEEeecCeeeeccccCCCCeEEEEECCeeeeeeeecCCCCCcccceEEEEecC--CCceEEEEEEeCCCCCcc
Confidence            468899999999999999988999999999999999999999999999999999999996  5679999999999999 9


Q ss_pred             CccEEEEEecccccCCCcee
Q 008661          143 DTLGDCTINISDLRDGQRHD  162 (558)
Q Consensus       143 DfIGev~IpL~eL~~~~~~e  162 (558)
                      ||||++.|+|..+...+...
T Consensus        82 D~mG~A~I~l~p~~~~~~~~  101 (168)
T KOG1030|consen   82 DFMGEATIPLKPLLEAQKMD  101 (168)
T ss_pred             cccceeeeccHHHHHHhhhh
Confidence            99999999999987654443

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=99.76  E-value=5.3e-18  Score=153.30  Aligned_cols=120  Identities=38%  Similarity=0.549  Sum_probs=105.6

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~  127 (558)
                      |.+.+++.|..  +.|+|+|++|++|+..+..+.+||||++++.+     ..++|++++++++|.|||+|.|.+...+..
T Consensus         2 g~~~~~~~~~~--~~l~v~i~~a~nL~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~wne~f~~~~~~~~~~   79 (131)
T cd04026           2 GRIYLKISVKD--NKLTVEVREAKNLIPMDPNGLSDPYVKLKLIPDPKNETKQKTKTIKKTLNPVWNETFTFDLKPADKD   79 (131)
T ss_pred             cEEEEEEEECC--CEEEEEEEEeeCCCCcCCCCCCCCcEEEEEEcCCCCCceecceeecCCCCCCccceEEEeCCchhcC
Confidence            56678888877  88999999999999988888999999999964     678999999999999999999998753345


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCceEE
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL  175 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL  175 (558)
                      ..|.|+|||++.++ +++||++.++|.++... ..+.||+|.+...|+.
T Consensus        80 ~~l~v~v~d~~~~~~~~~iG~~~~~l~~l~~~-~~~~w~~L~~~~~~~~  127 (131)
T cd04026          80 RRLSIEVWDWDRTTRNDFMGSLSFGVSELIKM-PVDGWYKLLNQEEGEY  127 (131)
T ss_pred             CEEEEEEEECCCCCCcceeEEEEEeHHHhCcC-ccCceEECcCcccccc
Confidence            68999999999886 89999999999999754 6789999998888864

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd08406 C2B_Synaptotagmin-12 C2 domain second repeat present in Synaptotagmin 12

Probab=99.76  E-value=4.1e-19  Score=163.87  Aligned_cols=112  Identities=10%  Similarity=0.120  Sum_probs=89.5

Q ss_pred             eEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661          173 GRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS  235 (558)
Q Consensus       173 GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~  235 (558)
                      |+|+|+|+|.+...+                .+.+|||||++|.+   .+++..|+||.++++++||+|| |.|.|. +.
T Consensus         2 G~i~~sL~Y~~~~~~L~V~Vi~A~nL~~~~~~g~~DpyVkv~l~~---~~~~~~k~kT~v~k~t~nP~~n-E~f~F~v~~   77 (136)
T cd08406           2 GEILLSLSYLPTAERLTVVVVKARNLVWDNGKTTADPFVKVYLLQ---DGRKISKKKTSVKRDDTNPIFN-EAMIFSVPA   77 (136)
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEe---CCccccccCCccccCCCCCeec-eeEEEECCH
Confidence            788888888876654                23379999999954   3566778899999999999999 999999 88


Q ss_pred             CCCCCCceEEEEEeccC--cccc-ceEEecC--CccccccCccccCCCCCcccceeec
Q 008661          236 EKSPKVADNFEPINIEG--QQET-GIWVHQP--GSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       236 e~l~~v~leveV~D~dG--~~e~-Gv~v~~p--gt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      +++....+.|+|||++.  ..+. |-.+.++  .++..+||.+|+.+||+++++||.+
T Consensus        78 ~~l~~~~l~~~V~~~d~~~~~~~iG~v~lg~~~~g~~~~hW~~ml~~~~~~v~~WH~l  135 (136)
T cd08406          78 IVLQDLSLRVTVAESTEDGKTPNVGHVIIGPAASGMGLSHWNQMLASLRKPVAMWHPL  135 (136)
T ss_pred             HHhCCcEEEEEEEeCCCCCCCCeeEEEEECCCCCChhHHHHHHHHHCCCCeeeEeeec
Confidence            88999999999999984  3333 5442222  1233589999999999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 12, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 13, do not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycl

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.76  E-value=1.9e-18  Score=158.88  Aligned_cols=116  Identities=17%  Similarity=0.225  Sum_probs=101.1

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~-  126 (558)
                      |++.++|.|++..+.|.|+|++|+||++.+ .+.+||||++++.+     .+++|+++++++||+|||+|.|.+...+. 
T Consensus         2 G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~-~~~~d~yVkv~l~~~~~~~~~~kT~v~~~~~nP~fnE~F~f~i~~~~l~   80 (137)
T cd08409           2 GDIQISLTYNPTLNRLTVVVLRARGLRQLD-HAHTSVYVKVSLMIHNKVVKTKKTEVVDGAASPSFNESFSFKVTSRQLD   80 (137)
T ss_pred             cEEEEEEEECCCCCeEEEEEEEecCCCccc-CCCCCeEEEEEEEECCEEeeeeecccEeCCCCCcccceEEEECCHHHhC
Confidence            568899999999999999999999999998 78899999999965     36699999999999999999999975333 


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ...|.|+|||++.++ +++||++.|+......+...++|..+..
T Consensus        81 ~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~  124 (137)
T cd08409          81 TASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLS  124 (137)
T ss_pred             ccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHh
Confidence            368999999999887 9999999999876666666788887754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=99.76  E-value=6.8e-18  Score=147.56  Aligned_cols=100  Identities=26%  Similarity=0.382  Sum_probs=90.4

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccE
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLG  146 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIG  146 (558)
                      .|.|+|++|++|+..+..+.+||||+++++.+.++|+++++|+||+|||.|.|.+... ....|.|+|||++.  +++||
T Consensus         1 ~L~V~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~v~v~d~~~--~~~iG   77 (105)
T cd04050           1 LLFVYLDSAKNLPLAKSTKEPSPYVELTVGKTTQKSKVKERTNNPVWEEGFTFLVRNP-ENQELEIEVKDDKT--GKSLG   77 (105)
T ss_pred             CEEEEEeeecCCCCcccCCCCCcEEEEEECCEEEeCccccCCCCCcccceEEEEeCCC-CCCEEEEEEEECCC--CCccE
Confidence            3899999999999999889999999999999999999999999999999999999863 35689999999987  88999


Q ss_pred             EEEEecccccCCC--ceeeeeecCC
Q 008661          147 DCTINISDLRDGQ--RHDMWIPLQN  169 (558)
Q Consensus       147 ev~IpL~eL~~~~--~~e~W~~L~~  169 (558)
                      ++.++|.++....  ..+.||+|.+
T Consensus        78 ~~~i~l~~l~~~~~~~~~~w~~L~~  102 (105)
T cd04050          78 SLTLPLSELLKEPDLTLDQPFPLDN  102 (105)
T ss_pred             EEEEEHHHhhccccceeeeeEecCC
Confidence            9999999987654  5789999985

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=99.75  E-value=5.9e-18  Score=150.00  Aligned_cols=95  Identities=23%  Similarity=0.359  Sum_probs=84.2

Q ss_pred             eEEEEEEEEecCCCCCCCC----CCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661           66 AYARVEVVEASDMKPSDLN----GLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV  141 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~----G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s  141 (558)
                      |+|.|+|++|++|++.+..    +.+||||+|+++..++||+++++++||+|||.|.|.+...+....|.|+|||++.++
T Consensus         1 g~l~v~v~~A~~L~~~~~~~~~~~~~DPYv~v~~~~~~~kT~v~~~t~nPvWne~f~f~v~~~~~~~~L~~~V~D~d~~~   80 (108)
T cd04039           1 GVVFMEIKSITDLPPLKNMTRTGFDMDPFVIISFGRRVFRTSWRRHTLNPVFNERLAFEVYPHEKNFDIQFKVLDKDKFS   80 (108)
T ss_pred             CEEEEEEEeeeCCCCccccCCCCCccCceEEEEECCEeEeeeeecCCCCCcccceEEEEEeCccCCCEEEEEEEECCCCC
Confidence            6899999999999988732    358999999999999999999999999999999999875444568999999999997


Q ss_pred             -CCccEEEEEecccccCCCc
Q 008661          142 -DDTLGDCTINISDLRDGQR  160 (558)
Q Consensus       142 -DDfIGev~IpL~eL~~~~~  160 (558)
                       |++||++.++|.+|..++.
T Consensus        81 ~dd~IG~~~l~L~~l~~~~~  100 (108)
T cd04039          81 FNDYVATGSLSVQELLNAAP  100 (108)
T ss_pred             CCcceEEEEEEHHHHHhhCC
Confidence             9999999999999876543

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>cd08692 C2B_Tac2-N C2 domain second repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=99.75  E-value=2.7e-18  Score=158.62  Aligned_cols=114  Identities=14%  Similarity=0.212  Sum_probs=96.7

Q ss_pred             CceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCC-CCccceEEEEeeccCCCC
Q 008661           54 GNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTL-SPKWHEEFNIPISTWDSP  127 (558)
Q Consensus        54 ~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTl-NPvWnEtF~F~V~~~e~~  127 (558)
                      ++.|+|.|.+..+.|+|.|++|+||+++...+.+||||+|+|..     .+.||+++++|+ ||+|||+|.|.++..+..
T Consensus         2 el~~sL~Y~p~~~rLtV~VikarnL~~~~~~~~~dpYVKV~L~~~~k~~~KkKT~v~k~t~~~P~fNEsF~Fdv~~~~~~   81 (135)
T cd08692           2 ELQLGTCFQAVNSRIQLQILEAQNLPSSSTPLTLSFFVKVGMFSTGGLLYKKKTRLVKSSNGQVKWGETMIFPVTQQEHG   81 (135)
T ss_pred             eEEEEeeecCcCCeEEEEEEEccCCCcccCCCCCCcEEEEEEEECCCcceeecCccEECCCCCceecceEEEeCCchhhe
Confidence            57899999999999999999999999986677789999999943     578999999996 699999999999864445


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ..|.|+|||++..+ +++||++.++.... .+...++|.++.
T Consensus        82 v~l~v~v~d~~~~~~n~~IG~v~lG~~~~-~~~~~~hW~~m~  122 (135)
T cd08692          82 IQFLIKLYSRSSVRRKHFLGQVWISSDSS-SSEAVEQWKDTI  122 (135)
T ss_pred             eEEEEEEEeCCCCcCCceEEEEEECCccC-CchhhhhHHHHH
Confidence            58999999999987 99999999999864 233456777664

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polypho

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=99.75  E-value=5.1e-18  Score=149.74  Aligned_cols=102  Identities=27%  Similarity=0.521  Sum_probs=90.8

Q ss_pred             EEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCcc-ceEEEEeeccCC-CCceEEEEEeecCCCC-CC
Q 008661           68 ARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKW-HEEFNIPISTWD-SPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        68 L~VtVieArdL~~~D~-~G~sDPYVkV~Lgp~k~KTkVikkTlNPvW-nEtF~F~V~~~e-~~~tL~V~V~D~D~~s-DD  143 (558)
                      |.|+|++|++|+.++. .+.+||||++++++.+++|+++++++||.| ||+|.|.+...+ ....|.|+|||++.++ ++
T Consensus         1 l~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~kT~v~~~~~nP~W~ne~f~f~i~~~~l~~~~l~i~V~d~d~~~~~~   80 (110)
T cd08688           1 LKVRVVAARDLPVMDRSSDLTDAFVEVKFGSTTYKTDVVKKSLNPVWNSEWFRFEVDDEELQDEPLQIRVMDHDTYSAND   80 (110)
T ss_pred             CEEEEEEEECCCccccCCCCCCceEEEEECCeeEecceecCCCCCcccCcEEEEEcChHHcCCCeEEEEEEeCCCCCCCC
Confidence            6899999999999884 789999999999999999999999999999 999999997533 2468999999999987 89


Q ss_pred             ccEEEEEecccccC---CCceeeeeecCC
Q 008661          144 TLGDCTINISDLRD---GQRHDMWIPLQN  169 (558)
Q Consensus       144 fIGev~IpL~eL~~---~~~~e~W~~L~~  169 (558)
                      +||++.++|.++..   ......||+|.+
T Consensus        81 ~iG~~~~~l~~l~~~~~~~~~~~w~~l~~  109 (110)
T cd08688          81 AIGKVYIDLNPLLLKDSVSQISGWFPIYD  109 (110)
T ss_pred             ceEEEEEeHHHhcccCCccccCCeEEccc
Confidence            99999999999977   345789999864

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=99.75  E-value=2e-17  Score=148.91  Aligned_cols=116  Identities=22%  Similarity=0.364  Sum_probs=102.6

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccC-CCCceEEEEEeecCCCC-CCccEEEE
Q 008661           72 VVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV-DDTLGDCT  149 (558)
Q Consensus        72 VieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~-e~~~tL~V~V~D~D~~s-DDfIGev~  149 (558)
                      |++|++|+.  ..+.+||||+|+++..+++|+++++++||+|||+|.|.+... .....|.|+|||++.++ +++||++.
T Consensus         2 vi~a~~L~~--~~g~~Dpyv~v~~~~~~~kT~v~~~~~nP~Wne~f~f~~~~~~~~~~~l~~~v~d~~~~~~d~~iG~~~   79 (127)
T cd08373           2 VVSLKNLPG--LKGKGDRIAKVTFRGVKKKTRVLENELNPVWNETFEWPLAGSPDPDESLEIVVKDYEKVGRNRLIGSAT   79 (127)
T ss_pred             eEEeeCCcc--cCCCCCCEEEEEECCEeeecceeCCCcCCcccceEEEEeCCCcCCCCEEEEEEEECCCCCCCceEEEEE
Confidence            789999988  678999999999998899999999999999999999999753 24679999999999987 89999999


Q ss_pred             EecccccCCCceeeeeecCCC----CceEEEEEEEEEeccCCCC
Q 008661          150 INISDLRDGQRHDMWIPLQNI----KIGRLHLAITVLEESAKQG  189 (558)
Q Consensus       150 IpL~eL~~~~~~e~W~~L~~k----~~GeL~LsL~y~p~~~~l~  189 (558)
                      ++|.++..+.....|++|.+.    ..|+|+++++|.+.....+
T Consensus        80 ~~l~~l~~~~~~~~~~~L~~~~~~~~~~~l~l~~~~~~~~~~~~  123 (127)
T cd08373          80 VSLQDLVSEGLLEVTEPLLDSNGRPTGATISLEVSYQPPDGAVG  123 (127)
T ss_pred             EEhhHcccCCceEEEEeCcCCCCCcccEEEEEEEEEeCCCCccC
Confidence            999999988888999999642    3589999999999875443

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=99.75  E-value=1.2e-17  Score=149.51  Aligned_cols=115  Identities=32%  Similarity=0.412  Sum_probs=100.7

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeecc-CC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST-WD-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~-~e-  125 (558)
                      |+++++|.|+...+.|+|+|++|++|+..+..+.+||||++++.+     .+.+|+++++++||.|||+|.|.... .+ 
T Consensus         2 G~~~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~~~~~~~~~~~~rT~v~~~~~~P~Wne~f~f~~~~~~~~   81 (123)
T cd04035           2 GTLEFTLLYDPANSALHCTIIRAKGLKAMDANGLSDPYVKLNLLPGASKATKLRTKTVHKTRNPEFNETLTYYGITEEDI   81 (123)
T ss_pred             cEEEEEEEEeCCCCEEEEEEEEeeCCCCCCCCCCCCceEEEEEecCCCCCCceeeeeecCCCCCCccceEEEcCCCHHHh
Confidence            678899999999999999999999999999889999999999853     46899999999999999999996332 11 


Q ss_pred             CCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeec
Q 008661          126 SPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL  167 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L  167 (558)
                      ....|.|+|||++.+++++||++.++|.+|..++..+.|+.|
T Consensus        82 ~~~~l~~~v~d~~~~~~~~iG~~~i~l~~l~~~~~~~~~~~~  123 (123)
T cd04035          82 QRKTLRLLVLDEDRFGNDFLGETRIPLKKLKPNQTKQFNICL  123 (123)
T ss_pred             CCCEEEEEEEEcCCcCCeeEEEEEEEcccCCCCcceEeeccC
Confidence            246899999999988888999999999999988888877754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.75  E-value=3.7e-18  Score=153.50  Aligned_cols=117  Identities=26%  Similarity=0.409  Sum_probs=103.1

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      |+++|+|.|+...+.|.|+|++|++|+..+..+.+||||++++.+     .+++|++++++.||.|||+|.|.+.... .
T Consensus         1 G~i~~~l~y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyv~v~l~~~~~~~~~~~T~~~~~~~~P~wne~f~f~i~~~~l~   80 (134)
T cd00276           1 GELLLSLSYLPTAERLTVVVLKARNLPPSDGKGLSDPYVKVSLLQGGKKLKKKKTSVKKGTLNPVFNEAFSFDVPAEQLE   80 (134)
T ss_pred             CeEEEEEEeeCCCCEEEEEEEEeeCCCCccCCCCCCcEEEEEEEcCCeEeeeecCcceecCCCCeeeeeEEEECCHHHhC
Confidence            567899999999999999999999999998889999999999965     3679999999999999999999987532 2


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK  171 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~  171 (558)
                      ...|.|+|||.+.++ +++||.+.++|.+  .+...+.|++|....
T Consensus        81 ~~~l~~~v~d~~~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~~~  124 (134)
T cd00276          81 EVSLVITVVDKDSVGRNEVIGQVVLGPDS--GGEELEHWNEMLASP  124 (134)
T ss_pred             CcEEEEEEEecCCCCCCceeEEEEECCCC--CCcHHHHHHHHHhCC
Confidence            468999999999876 8999999999999  566789999997654

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.75  E-value=3.1e-18  Score=156.75  Aligned_cols=116  Identities=21%  Similarity=0.287  Sum_probs=97.3

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~-  126 (558)
                      |+++|+|.|.+..+.|.|+|++|++|+.++..|.+||||++++.+     .+.+|+++++|+||.|||+|.|.+...+. 
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~F~f~i~~~~l~   80 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVHGLKLIKTKKTSCMRGTIDPFYNESFSFKVPQEELE   80 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEcCCcccceEcCccccCCCCCccceeEEEeCCHHHhC
Confidence            568899999999999999999999999999999999999999843     35799999999999999999999864222 


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ...|.|+|||++..+ +++||++.|....... ...++|+.|..
T Consensus        81 ~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~-~~~~~W~~l~~  123 (135)
T cd08410          81 NVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGP-SETNHWRRMLN  123 (135)
T ss_pred             CCEEEEEEEeCCCCCCCcEEEEEEEcCccCCc-hHHHHHHHHHh
Confidence            347999999999887 9999999876543322 23577888765

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.75  E-value=1.6e-17  Score=150.22  Aligned_cols=109  Identities=33%  Similarity=0.534  Sum_probs=95.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC------
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF------  140 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~------  140 (558)
                      .|+|+|++|++|+..|..|.+||||+++++...++|+++++++||.|||+|.|.+..  ....|.|+|||+|..      
T Consensus         2 ~L~V~vi~a~~L~~~d~~g~~DPyv~v~~~~~~~kT~~v~~t~~P~Wne~f~f~~~~--~~~~l~i~v~d~d~~~~~~~~   79 (127)
T cd04027           2 KISITVVCAQGLIAKDKTGTSDPYVTVQVGKTKKRTKTIPQNLNPVWNEKFHFECHN--SSDRIKVRVWDEDDDIKSRLK   79 (127)
T ss_pred             eEEEEEEECcCCcCCCCCCCcCcEEEEEECCEeeecceecCCCCCccceEEEEEecC--CCCEEEEEEEECCCCcccccc
Confidence            689999999999999988999999999999889999999999999999999998864  246899999999852      


Q ss_pred             ------CCCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEE
Q 008661          141 ------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAI  179 (558)
Q Consensus       141 ------sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL  179 (558)
                            .+++||++.++|.++.  .....||.|++.     ..|+|+|++
T Consensus        80 ~~~~~~~~~~iG~~~i~l~~~~--~~~~~w~~L~~~~~~~~~~G~i~~~~  127 (127)
T cd04027          80 QKFTRESDDFLGQTIIEVRTLS--GEMDVWYNLEKRTDKSAVSGAIRLHI  127 (127)
T ss_pred             eeccccCCCcceEEEEEhHHcc--CCCCeEEECccCCCCCcEeEEEEEEC
Confidence                  3899999999999875  346789999862     468988864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=99.74  E-value=9.2e-18  Score=148.30  Aligned_cols=100  Identities=27%  Similarity=0.533  Sum_probs=87.7

Q ss_pred             eEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEeecCC
Q 008661           66 AYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDH  139 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~D~  139 (558)
                      |+|+|+|++|++|+..+.. +.+||||+|++.+   ..++|+++++|+||+|||+|.|.+...+  ....|.|+|||+|.
T Consensus         1 G~L~V~v~~a~~L~~~d~~~~~~Dpyv~v~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~~~~~~~~~~~~l~~~V~d~d~   80 (111)
T cd04041           1 GVLVVTIHRATDLPKADFGTGSSDPYVTASFAKFGKPLYSTRIIRKDLNPVWEETWFVLVTPDEVKAGERLSCRLWDSDR   80 (111)
T ss_pred             CEEEEEEEEeeCCCcccCCCCCCCccEEEEEccCCCccEeeeeECCCCCCccceeEEEEeCchhccCCCEEEEEEEeCCC
Confidence            6899999999999999987 8999999999854   4689999999999999999999886432  34689999999999


Q ss_pred             CC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          140 FV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       140 ~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ++ |++||++.++|.++..   ...|++++
T Consensus        81 ~~~dd~lG~~~i~l~~l~~---~~~~~~~~  107 (111)
T cd04041          81 FTADDRLGRVEIDLKELIE---DRNWMGRR  107 (111)
T ss_pred             CCCCCcceEEEEEHHHHhc---CCCCCccc
Confidence            97 9999999999999973   45688876

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.74  E-value=1.2e-17  Score=152.29  Aligned_cols=106  Identities=26%  Similarity=0.385  Sum_probs=94.9

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCccceEEEEeeccC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTW  124 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-------~k~KTkVikkTlNPvWnEtF~F~V~~~  124 (558)
                      .|++.+++.|+...+.|+|+|++|++|+.++..+.+||||+|++.+       ..++|+++++|+||+|||+|.|.+...
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~i~~~   81 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHLFPDVPTPKTQVKKKTLFPLFDESFEFNVPPE   81 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCcCccccccccccCcCCCCCccCCEEEEEechh
Confidence            3678899999999999999999999999999889999999999963       468999999999999999999998742


Q ss_pred             C---CCceEEEEEeecCCCC-CCccEEEEEecccccC
Q 008661          125 D---SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRD  157 (558)
Q Consensus       125 e---~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~  157 (558)
                      +   ....|.|+|||++.++ +++||++.++|.++..
T Consensus        82 ~~~~~~~~l~~~V~d~d~~~~d~~iG~~~i~l~~l~~  118 (133)
T cd04009          82 QCSVEGALLLFTVKDYDLLGSNDFEGEAFLPLNDIPG  118 (133)
T ss_pred             hcccCCCEEEEEEEecCCCCCCcEeEEEEEeHHHCCc
Confidence            1   2458999999999998 9999999999999864

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=99.73  E-value=3.2e-17  Score=147.55  Aligned_cols=109  Identities=24%  Similarity=0.432  Sum_probs=94.6

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeC-CeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC---CC
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLG-PYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV---DD  143 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lg-p~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s---DD  143 (558)
                      |+|+|++|++|+.++..+.+||||++++. ...++|+++++++||.|||+|.|.+..   .+.|.|+|||++.++   ++
T Consensus         2 l~v~v~~A~~L~~~~~~~~~dpyv~v~~~~~~~~kT~v~~~t~nP~Wne~f~~~~~~---~~~l~i~V~d~~~~~~~~d~   78 (123)
T cd08382           2 VRLTVLCADGLAKRDLFRLPDPFAVITVDGGQTHSTDVAKKTLDPKWNEHFDLTVGP---SSIITIQVFDQKKFKKKDQG   78 (123)
T ss_pred             eEEEEEEecCCCccCCCCCCCcEEEEEECCccceEccEEcCCCCCcccceEEEEeCC---CCEEEEEEEECCCCCCCCCc
Confidence            89999999999999989999999999996 578899999999999999999999974   579999999999886   47


Q ss_pred             ccEEEEEecccccCCC-ceeeeeecCCC-------CceEEEEEE
Q 008661          144 TLGDCTINISDLRDGQ-RHDMWIPLQNI-------KIGRLHLAI  179 (558)
Q Consensus       144 fIGev~IpL~eL~~~~-~~e~W~~L~~k-------~~GeL~LsL  179 (558)
                      +||++.+++.++.... ....|++|+..       ..|+|.+.+
T Consensus        79 ~lG~~~i~l~~l~~~~~~~~~~~~l~~~~~~~~~~~~G~v~~~~  122 (123)
T cd08382          79 FLGCVRIRANAVLPLKDTGYQRLDLRKLKKSDNLSVRGKIVVSL  122 (123)
T ss_pred             eEeEEEEEHHHccccCCCccceeEeecCCCCCCceEeeEEEEEe
Confidence            9999999999986544 34779999642       258888775

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=99.73  E-value=1.6e-17  Score=182.59  Aligned_cols=176  Identities=26%  Similarity=0.358  Sum_probs=149.9

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      ..|.|.|.+|+||++.+..|.+||||.|.+.. ...+|.++.+++.|.|.|+|.|.++.  .-+.|.|.|||.| ++ |+
T Consensus         5 ~sl~vki~E~knL~~~~~~g~~D~yC~v~lD~E~v~RT~tv~ksL~PF~gEe~~~~iP~--~F~~l~fYv~D~d-~~~D~   81 (800)
T KOG2059|consen    5 QSLKVKIGEAKNLPSYGPSGMRDCYCTVNLDQEEVCRTATVEKSLCPFFGEEFYFEIPR--TFRYLSFYVWDRD-LKRDD   81 (800)
T ss_pred             cceeEEEeecccCCCCCCCCCcCcceEEeecchhhhhhhhhhhhcCCccccceEEecCc--ceeeEEEEEeccc-ccccc
Confidence            46899999999999999999999999999988 67899999999999999999999986  5679999999999 76 99


Q ss_pred             ccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEEeccCCC-----------------CCCCCcceEEecc
Q 008661          144 TLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQ-----------------GVDSPCDGGTLNK  201 (558)
Q Consensus       144 fIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~~~~l-----------------~lsDPyVKv~L~~  201 (558)
                      .||.+.|.-.+|......+.|+.|+..     ..|+|+|+|.+.+....-                 +-.|||+++..- 
T Consensus        82 ~IGKvai~re~l~~~~~~d~W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~~~~~dp~~~v~~~-  160 (800)
T KOG2059|consen   82 IIGKVAIKREDLHMYPGKDTWFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPIINGQCDPFARVTLC-  160 (800)
T ss_pred             ccceeeeeHHHHhhCCCCccceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCceeCCCCCcceEEeec-
Confidence            999999999999887788999999863     469999999998865331                 117999999882 


Q ss_pred             cCCCCceeeEEEeEecCCCCCCccCCCceeec-CCC-------------CCCCCceEEEEEe
Q 008661          202 EGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSE-------------KSPKVADNFEPIN  249 (558)
Q Consensus       202 ~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e-------------~l~~v~leveV~D  249 (558)
                         ++.+.+.++|.++++|.||.|| |.|+|+ -.+             +.....+.+++|+
T Consensus       161 ---g~~~~~~~~T~~~kkt~~p~~~-Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~  218 (800)
T KOG2059|consen  161 ---GPSKLKEKKTKVKKKTTNPQFD-EVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWN  218 (800)
T ss_pred             ---ccchhhccccceeeeccCcchh-hheeeeeccccccccchhcCcccCCceeeEEEeecc
Confidence               3455666899999999999999 999999 221             2245677888887

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=99.71  E-value=1.2e-16  Score=146.23  Aligned_cols=99  Identities=24%  Similarity=0.332  Sum_probs=86.9

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCc
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT  144 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDf  144 (558)
                      ++.|.|+|++|++|+..+   ..||||+|.++.++.+|+++++ .||.|||+|.|.+..  ....|.|+|||+|.++||+
T Consensus         1 m~~L~V~Vv~Ar~L~~~~---~~dPYV~Ik~g~~k~kT~v~~~-~nP~WnE~F~F~~~~--~~~~L~v~V~dkd~~~DD~   74 (127)
T cd08394           1 MSLLCVLVKKAKLDGAPD---KFNTYVTLKVQNVKSTTIAVRG-SQPCWEQDFMFEINR--LDLGLVIELWNKGLIWDTL   74 (127)
T ss_pred             CceEEEEEEEeeCCCCCC---CCCCeEEEEECCEEeEeeECCC-CCCceeeEEEEEEcC--CCCEEEEEEEeCCCcCCCc
Confidence            368999999999997644   4699999999999999999988 499999999999975  3456999999999888999


Q ss_pred             cEEEEEecccccCCCce--eeeeecCC
Q 008661          145 LGDCTINISDLRDGQRH--DMWIPLQN  169 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~--e~W~~L~~  169 (558)
                      ||++.|+|.++..+...  ..||+|.+
T Consensus        75 lG~v~i~L~~v~~~~~~~~~~Wy~L~~  101 (127)
T cd08394          75 VGTVWIPLSTIRQSNEEGPGEWLTLDS  101 (127)
T ss_pred             eEEEEEEhHHcccCCCCCCCccEecCh
Confidence            99999999999866554  88999986

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=99.70  E-value=6.7e-17  Score=151.92  Aligned_cols=107  Identities=21%  Similarity=0.347  Sum_probs=89.9

Q ss_pred             EEEEEEEEecCCCCCCCCC--------------CCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEE
Q 008661           67 YARVEVVEASDMKPSDLNG--------------LADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVI  132 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G--------------~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V  132 (558)
                      .|.|+|++|++|+.+|..+              .+||||+|.+++.+.+|+++++++||+|||+|.|.+......+.|.|
T Consensus         1 ~~~V~V~~A~dLp~~d~~~~~~~~~~~~~~~~~~~DPYV~V~~~g~~~kT~v~~~t~nPvWNE~f~f~v~~p~~~~~l~~   80 (151)
T cd04018           1 RFIFKIYRAEDLPQMDSGIMANVKKAFLGEKKELVDPYVEVSFAGQKVKTSVKKNSYNPEWNEQIVFPEMFPPLCERIKI   80 (151)
T ss_pred             CeEEEEEEeCCCCccChhhhccceeccccCCCCCcCcEEEEEECCEeeecceEcCCCCCCcceEEEEEeeCCCcCCEEEE
Confidence            3789999999999998543              68999999999999999999999999999999999764334679999


Q ss_pred             EEeecCCCC-CCccEEEEEecccccCCCc-------eeeeeecCCCCce
Q 008661          133 EVRDKDHFV-DDTLGDCTINISDLRDGQR-------HDMWIPLQNIKIG  173 (558)
Q Consensus       133 ~V~D~D~~s-DDfIGev~IpL~eL~~~~~-------~e~W~~L~~k~~G  173 (558)
                      +|||+|..+ |++||.+.++|.++...+.       ...|+.|.+..++
T Consensus        81 ~v~D~d~~~~dd~iG~~~l~l~~l~~~~~~~~lp~~~p~W~~lyg~~~~  129 (151)
T cd04018          81 QIRDWDRVGNDDVIGTHFIDLSKISNSGDEGFLPTFGPSFVNLYGSPRE  129 (151)
T ss_pred             EEEECCCCCCCCEEEEEEEeHHHhccCCccccCCccCceEEEeecCccc
Confidence            999999996 9999999999999876542       2467776554444

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=99.70  E-value=2.2e-16  Score=141.42  Aligned_cols=105  Identities=25%  Similarity=0.396  Sum_probs=94.7

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecC-CCCCccceEEEEeeccCC--CCceEEEEEeecCCCC-
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRK-TLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikk-TlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~D~~s-  141 (558)
                      |.|.|+|++|++|+..+..+.+||||+++++...++|+++++ ++||.|||+|.|.+....  ....|.|+|||.+.++ 
T Consensus         1 g~L~V~V~~A~~L~~~~~~~~~dpyv~v~~~~~~~~T~~~~~~t~nP~Wne~f~f~v~~~~~~~~~~l~v~V~d~~~~~~   80 (124)
T cd04049           1 GTLEVLLISAKGLQDTDFLGKIDPYVIIQCRTQERKSKVAKGDGRNPEWNEKFKFTVEYPGWGGDTKLILRIMDKDNFSD   80 (124)
T ss_pred             CeEEEEEEecCCCCCCCCCCCcCceEEEEECCEeeeeeEcCCCCCCCcccceEEEEecCcccCCCCEEEEEEEECccCCC
Confidence            679999999999999998899999999999988889999884 999999999999998632  2468999999999987 


Q ss_pred             CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          142 DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      +++||.+.++|.++..++..+.|+.|.+.
T Consensus        81 d~~iG~~~i~l~~l~~~~~~~~~~~l~p~  109 (124)
T cd04049          81 DDFIGEATIHLKGLFEEGVEPGTAELVPA  109 (124)
T ss_pred             CCeEEEEEEEhHHhhhCCCCcCceEeecc
Confidence            99999999999999888888999999873

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=99.70  E-value=8.3e-17  Score=144.17  Aligned_cols=111  Identities=23%  Similarity=0.372  Sum_probs=95.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeec-CCCCCccceEEEEeeccCC---CCceEEEEEeecCCCC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQR-KTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV  141 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVik-kTlNPvWnEtF~F~V~~~e---~~~tL~V~V~D~D~~s  141 (558)
                      +|+|+|++|++|+..+..+.+||||+|++++ .+++|+++. ++.||.|||.|.|.+....   ....|.|+|||++.++
T Consensus         1 ~L~V~V~sA~~L~~~~~~~~~dpYv~v~~~~~~~~~T~~~~~~~~~P~Wne~f~f~v~~~~~~~~~~~l~~~v~d~~~~~   80 (125)
T cd04051           1 TLEITIISAEDLKNVNLFGKMKVYAVVWIDPSHKQSTPVDRDGGTNPTWNETLRFPLDERLLQQGRLALTIEVYCERPSL   80 (125)
T ss_pred             CEEEEEEEcccCCCCCcccCCceEEEEEECCCcccccccccCCCCCCCCCCEEEEEcChHhcccCccEEEEEEEECCCCC
Confidence            4899999999999998889999999999988 888999975 6899999999999998632   2578999999999976


Q ss_pred             -CCccEEEEEecccccCCCc-----eeeeeecCC---CCceEEEE
Q 008661          142 -DDTLGDCTINISDLRDGQR-----HDMWIPLQN---IKIGRLHL  177 (558)
Q Consensus       142 -DDfIGev~IpL~eL~~~~~-----~e~W~~L~~---k~~GeL~L  177 (558)
                       +++||++.++|.++..+..     ...||+|..   +..|.|+|
T Consensus        81 ~~~~lG~~~i~l~~l~~~~~~~~~~~~~~~~l~~~~g~~~G~~~~  125 (125)
T cd04051          81 GDKLIGEVRVPLKDLLDGASPAGELRFLSYQLRRPSGKPQGVLNF  125 (125)
T ss_pred             CCCcEEEEEEEHHHhhcccCCCCcceeEEEEeECCCCCcCeEEeC
Confidence             9999999999999986654     378999975   35688764

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>cd08409 C2B_Synaptotagmin-15 C2 domain second repeat present in Synaptotagmin 15

Probab=99.69  E-value=2e-17  Score=152.02  Aligned_cols=114  Identities=17%  Similarity=0.192  Sum_probs=88.5

Q ss_pred             ceEEEEEEEEEeccCC---------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661          172 IGRLHLAITVLEESAK---------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS  235 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~---------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~  235 (558)
                      .|+|+|+|+|.+..++               .+..|||||+++...   +++.+++||.++++++||+|| |.|.|. +.
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~V~~a~nL~~~~~~~~d~yVkv~l~~~---~~~~~~~kT~v~~~~~nP~fn-E~F~f~i~~   76 (137)
T cd08409           1 LGDIQISLTYNPTLNRLTVVVLRARGLRQLDHAHTSVYVKVSLMIH---NKVVKTKKTEVVDGAASPSFN-ESFSFKVTS   76 (137)
T ss_pred             CcEEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCeEEEEEEEEC---CEEeeeeecccEeCCCCCccc-ceEEEECCH
Confidence            3778888887765543               123799999999543   456678899999999999999 999999 77


Q ss_pred             CCCCCCceEEEEEeccCccc--c-ceEEecC----CccccccCccccCCCCCcccceeecC
Q 008661          236 EKSPKVADNFEPINIEGQQE--T-GIWVHQP----GSEVAQTWEPRKGKNRRLDTLVRRVP  289 (558)
Q Consensus       236 e~l~~v~leveV~D~dG~~e--~-Gv~v~~p----gt~~~~hW~~~l~~~r~~~~q~~~~~  289 (558)
                      +++....+.|+||++++...  . |-...++    .+...+||.+|+.+||+++++||.+|
T Consensus        77 ~~l~~~~L~~~V~~~~~~~~~~~lG~v~ig~~~~~~~~~~~hW~~~~~~p~~~i~~WH~l~  137 (137)
T cd08409          77 RQLDTASLSLSVMQSGGVRKSKLLGRVVLGPFMYARGKELEHWNDMLSKPKELIKRWHALG  137 (137)
T ss_pred             HHhCccEEEEEEEeCCCCCCcceEEEEEECCcccCCChHHHHHHHHHhCCCCceeEEEeCC
Confidence            88888999999999985333  2 5443332    12334899999999999999999875

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 id

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=99.69  E-value=1.1e-16  Score=150.72  Aligned_cols=102  Identities=32%  Similarity=0.559  Sum_probs=90.5

Q ss_pred             ecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-----------------------------EEEeeeecCCCCC
Q 008661           61 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-----------------------------RFRTKTQRKTLSP  111 (558)
Q Consensus        61 Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-----------------------------k~KTkVikkTlNP  111 (558)
                      +.++.+.|.|+|++|++|+++|..|.+||||+|++.+.                             .++|+++++|+||
T Consensus        23 ~~~~~~~L~V~vi~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP  102 (153)
T cd08676          23 AEPPIFVLKVTVIEAKGLLAKDVNGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNP  102 (153)
T ss_pred             cCCCeEEEEEEEEeccCCcccCCCCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCC
Confidence            56788999999999999999999999999999999641                             3689999999999


Q ss_pred             ccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeec
Q 008661          112 KWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPL  167 (558)
Q Consensus       112 vWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L  167 (558)
                      .|||+|.|.+... ....|.|+|||++   +++||++.++|.++.. ...+.||+|
T Consensus       103 ~WnE~F~f~v~~~-~~~~L~i~V~D~d---d~~IG~v~i~l~~l~~-~~~d~W~~L  153 (153)
T cd08676         103 VWNETFRFEVEDV-SNDQLHLDIWDHD---DDFLGCVNIPLKDLPS-CGLDSWFKL  153 (153)
T ss_pred             ccccEEEEEeccC-CCCEEEEEEEecC---CCeEEEEEEEHHHhCC-CCCCCeEeC
Confidence            9999999999753 3568999999998   8999999999999984 457999987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=99.69  E-value=1.1e-17  Score=176.19  Aligned_cols=118  Identities=34%  Similarity=0.517  Sum_probs=105.5

Q ss_pred             eEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEE
Q 008661           57 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLV  131 (558)
Q Consensus        57 fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~  131 (558)
                      +-|........|+|+|.+|+||.+||.+|.+||||++.|-|     .+++|++++.||||+|||+|.|.+.+.+..+.|.
T Consensus       171 l~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliPD~~~~sKqKTkTik~~LNP~wNEtftf~Lkp~DkdrRls  250 (683)
T KOG0696|consen  171 LYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIKATLNPVWNETFTFKLKPSDKDRRLS  250 (683)
T ss_pred             EEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEeccCCcchhhhhhhhhhhhcCccccceeEEecccccccceeE
Confidence            44444557789999999999999999999999999999966     4779999999999999999999999877888999


Q ss_pred             EEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCceEE
Q 008661          132 IEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL  175 (558)
Q Consensus       132 V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL  175 (558)
                      |+|||||+.+ +||||...+.+++|... +.+.||.|..+..|+-
T Consensus       251 iEvWDWDrTsRNDFMGslSFgisEl~K~-p~~GWyKlLsqeEGEy  294 (683)
T KOG0696|consen  251 IEVWDWDRTSRNDFMGSLSFGISELQKA-PVDGWYKLLSQEEGEY  294 (683)
T ss_pred             EEEecccccccccccceecccHHHHhhc-chhhHHHHhhhhcCce
Confidence            9999999998 99999999999999765 6789999988777763

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=99.69  E-value=2.2e-16  Score=139.16  Aligned_cols=101  Identities=24%  Similarity=0.348  Sum_probs=87.4

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC---CCceEEEEEeecCCCC
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD---SPNVLVIEVRDKDHFV  141 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e---~~~tL~V~V~D~D~~s  141 (558)
                      ...|+|+|++|++|+    .+.+||||++++++++++|+++++++||.|||+|.|.+....   ....|.|+|||++.++
T Consensus         3 ~~~l~V~v~~a~~L~----~~~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~~l~~~~l~i~V~d~~~~~   78 (111)
T cd04011           3 DFQVRVRVIEARQLV----GGNIDPVVKVEVGGQKKYTSVKKGTNCPFYNEYFFFNFHESPDELFDKIIKISVYDSRSLR   78 (111)
T ss_pred             cEEEEEEEEEcccCC----CCCCCCEEEEEECCEeeeeeEEeccCCCccccEEEEecCCCHHHHhcCeEEEEEEcCcccc
Confidence            457999999999998    578999999999999999999999999999999999975321   2458999999999987


Q ss_pred             -CCccEEEEEecccccCCC---ceeeeeecCC
Q 008661          142 -DDTLGDCTINISDLRDGQ---RHDMWIPLQN  169 (558)
Q Consensus       142 -DDfIGev~IpL~eL~~~~---~~e~W~~L~~  169 (558)
                       +++||++.++|..+..+.   ....|++|..
T Consensus        79 ~~~~iG~~~i~l~~v~~~~~~~~~~~w~~L~~  110 (111)
T cd04011          79 SDTLIGSFKLDVGTVYDQPDHAFLRKWLLLTD  110 (111)
T ss_pred             cCCccEEEEECCccccCCCCCcceEEEEEeeC
Confidence             899999999999996653   3578999863

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=99.69  E-value=3.2e-16  Score=138.00  Aligned_cols=108  Identities=38%  Similarity=0.621  Sum_probs=94.8

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL  145 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI  145 (558)
                      |+|+|++|++|+..+..+.+||||++++.. ..++|+++.++++|.|||+|.|.+... ..+.|.|+|||++.++ +++|
T Consensus         1 l~v~vi~a~~L~~~~~~~~~dpyv~v~~~~~~~~~T~v~~~~~~P~Wne~f~~~~~~~-~~~~l~~~v~d~~~~~~~~~i   79 (115)
T cd04040           1 LTVDVISAENLPSADRNGKSDPFVKFYLNGEKVFKTKTIKKTLNPVWNESFEVPVPSR-VRAVLKVEVYDWDRGGKDDLL   79 (115)
T ss_pred             CEEEEEeeeCCCCCCCCCCCCCeEEEEECCCcceeeceecCCCCCcccccEEEEeccC-CCCEEEEEEEeCCCCCCCCce
Confidence            579999999999998888999999999965 557999999999999999999998752 4578999999999987 9999


Q ss_pred             EEEEEecccccCCCceeeeeecCCC---CceEEE
Q 008661          146 GDCTINISDLRDGQRHDMWIPLQNI---KIGRLH  176 (558)
Q Consensus       146 Gev~IpL~eL~~~~~~e~W~~L~~k---~~GeL~  176 (558)
                      |++.+++.++..+.....|++|.+.   ..|.|.
T Consensus        80 G~~~~~l~~l~~~~~~~~~~~L~~~g~~~~~~~~  113 (115)
T cd04040          80 GSAYIDLSDLEPEETTELTLPLDGQGGGKLGAVF  113 (115)
T ss_pred             EEEEEEHHHcCCCCcEEEEEECcCCCCccCceEE
Confidence            9999999999888889999999853   345554

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=99.69  E-value=3.5e-16  Score=140.76  Aligned_cols=107  Identities=30%  Similarity=0.419  Sum_probs=94.5

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      |.|+|+|++|++|+..+..+.+||||+++++. ...+|++++++.||.|||+|.|.+..  ..+.|.|+|||++.++ ++
T Consensus         1 g~L~V~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~kT~~~~~t~~P~Wne~f~~~v~~--~~~~L~v~v~d~~~~~~d~   78 (120)
T cd04045           1 GVLRLHIRKANDLKNLEGVGKIDPYVRVLVNGIVKGRTVTISNTLNPVWDEVLYVPVTS--PNQKITLEVMDYEKVGKDR   78 (120)
T ss_pred             CeEEEEEEeeECCCCccCCCCcCCEEEEEECCEEeeceeEECCCcCCccCceEEEEecC--CCCEEEEEEEECCCCCCCC
Confidence            67999999999999999889999999999976 57899999999999999999998875  3468999999999987 88


Q ss_pred             ccEEEEEecccccCCCceeeeeecCCCCceEE
Q 008661          144 TLGDCTINISDLRDGQRHDMWIPLQNIKIGRL  175 (558)
Q Consensus       144 fIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL  175 (558)
                      +||++.++|.++..+ ..+.||.|-+...+.+
T Consensus        79 ~IG~~~~~l~~l~~~-~~~~~~~~~~~~~~~~  109 (120)
T cd04045          79 SLGSVEINVSDLIKK-NEDGKYVEYDDEEERL  109 (120)
T ss_pred             eeeEEEEeHHHhhCC-CCCceEEecCCCccee
Confidence            999999999999876 6688888876555544

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04032 C2_Perforin C2 domain of Perforin

Probab=99.68  E-value=2.5e-16  Score=144.08  Aligned_cols=94  Identities=27%  Similarity=0.349  Sum_probs=83.6

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661           62 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV  141 (558)
Q Consensus        62 d~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s  141 (558)
                      ....+.|+|+|++|++|+ .+..+.+||||+|+++..+++|+++++++||+|||+|.|..........|.|+|||++.++
T Consensus        24 ~~~~~~L~V~V~~A~~L~-~d~~g~~DPYVkV~~~~~~~kT~vi~~t~nPvWNE~F~f~~~~~~~~~~L~v~V~D~d~~s  102 (127)
T cd04032          24 RRGLATLTVTVLRATGLW-GDYFTSTDGYVKVFFGGQEKRTEVIWNNNNPRWNATFDFGSVELSPGGKLRFEVWDRDNGW  102 (127)
T ss_pred             cCCcEEEEEEEEECCCCC-cCcCCCCCeEEEEEECCccccCceecCCCCCcCCCEEEEecccCCCCCEEEEEEEeCCCCC
Confidence            456799999999999997 4677889999999999899999999999999999999997544345679999999999997


Q ss_pred             -CCccEEEEEeccccc
Q 008661          142 -DDTLGDCTINISDLR  156 (558)
Q Consensus       142 -DDfIGev~IpL~eL~  156 (558)
                       |++||++.++|....
T Consensus       103 ~dd~IG~~~i~l~~~~  118 (127)
T cd04032         103 DDDLLGTCSVVPEAGV  118 (127)
T ss_pred             CCCeeEEEEEEecCCc
Confidence             999999999999655

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=2.7e-16  Score=144.83  Aligned_cols=102  Identities=28%  Similarity=0.438  Sum_probs=91.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeC----CeEEEeeeecCCCCCccceEEEEeeccCC--------------CCce
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLG----PYRFRTKTQRKTLSPKWHEEFNIPISTWD--------------SPNV  129 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lg----p~k~KTkVikkTlNPvWnEtF~F~V~~~e--------------~~~t  129 (558)
                      |+|+|++|++|+.+ ..+.+||||+++++    ..+++|++++++.||.|||+|.|.+....              ....
T Consensus         1 L~V~Vi~A~~L~~~-~~g~~dPyv~v~~~~~~~~~~~rT~vv~~t~nP~Wne~f~f~~~~~~~~~~~~~~~~~~~~~~~~   79 (137)
T cd08675           1 LSVRVLECRDLALK-SNGTCDPFARVTLNYSSKTDTKRTKVKKKTNNPRFDEAFYFELTIGFSYEKKSFKVEEEDLEKSE   79 (137)
T ss_pred             CEEEEEEccCCCcc-cCCCCCcEEEEEEecCCcCCeeccceeeCCCCCCcceEEEEEccccccccccccccccccccccE
Confidence            67999999999988 78999999999998    67889999999999999999999987531              3458


Q ss_pred             EEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          130 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       130 L~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      |.|+|||++.++ ++|||++.++|.++........||+|++.
T Consensus        80 l~i~V~d~~~~~~~~~IG~~~i~l~~l~~~~~~~~W~~L~~~  121 (137)
T cd08675          80 LRVELWHASMVSGDDFLGEVRIPLQGLQQAGSHQAWYFLQPR  121 (137)
T ss_pred             EEEEEEcCCcCcCCcEEEEEEEehhhccCCCcccceEecCCc
Confidence            999999999986 99999999999999877788999999874

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=99.67  E-value=6.7e-16  Score=135.96  Aligned_cols=108  Identities=32%  Similarity=0.450  Sum_probs=87.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCC-CceEEEEEeecCCCC-CCc
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFV-DDT  144 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~-~~tL~V~V~D~D~~s-DDf  144 (558)
                      |+|+|++|++|+..   +.+||||+++++.. .++|+++++ +||.|||+|.|.+...+. ...|.|.+||.+... +.+
T Consensus         2 L~v~vi~a~~l~~~---~~~dpyv~v~~~~~~~~kT~~~~~-~~P~Wne~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~   77 (117)
T cd08383           2 LRLRILEAKNLPSK---GTRDPYCTVSLDQVEVARTKTVEK-LNPFWGEEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIV   77 (117)
T ss_pred             eEEEEEEecCCCcC---CCCCceEEEEECCEEeEecceEEC-CCCcccceEEEecCCccccEEEEEEEEEecccCCCeeE
Confidence            78999999999876   78999999999874 579999999 999999999999986332 357888889887665 556


Q ss_pred             cEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661          145 LGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV  181 (558)
Q Consensus       145 IGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y  181 (558)
                      +|.+  +|..+..+...+.||+|++.     ..|+|+|.+.|
T Consensus        78 ~g~v--~l~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~~~~  117 (117)
T cd08383          78 IGKV--ALSKLDLGQGKDEWFPLTPVDPDSEVQGSVRLRARY  117 (117)
T ss_pred             EEEE--EecCcCCCCcceeEEECccCCCCCCcCceEEEEEEC
Confidence            6655  55555557778999999863     36999999976

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=99.66  E-value=6.4e-16  Score=136.73  Aligned_cols=100  Identities=24%  Similarity=0.445  Sum_probs=87.8

Q ss_pred             CCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccC-CCc
Q 008661           83 LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRD-GQR  160 (558)
Q Consensus        83 ~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~-~~~  160 (558)
                      .+|.+||||+++++. ..++|+++++++||.|||.|.|.+... ....|.|.|||++.+++++||.+.++|.++.. ...
T Consensus         9 ~~G~~dPYv~v~v~~~~~~kT~v~~~t~nP~Wne~f~f~v~~~-~~~~l~i~v~d~~~~~d~~iG~~~v~L~~l~~~~~~   87 (111)
T cd04052           9 KTGLLSPYAELYLNGKLVYTTRVKKKTNNPSWNASTEFLVTDR-RKSRVTVVVKDDRDRHDPVLGSVSISLNDLIDATSV   87 (111)
T ss_pred             cCCCCCceEEEEECCEEEEEEeeeccCCCCccCCceEEEecCc-CCCEEEEEEEECCCCCCCeEEEEEecHHHHHhhhhc
Confidence            478899999999987 467999999999999999999998752 45689999999998889999999999999854 344


Q ss_pred             eeeeeecCCCCceEEEEEEEEEe
Q 008661          161 HDMWIPLQNIKIGRLHLAITVLE  183 (558)
Q Consensus       161 ~e~W~~L~~k~~GeL~LsL~y~p  183 (558)
                      ...||+|.+...|+|+|++.|.|
T Consensus        88 ~~~w~~L~~~~~G~i~~~~~~~p  110 (111)
T cd04052          88 GQQWFPLSGNGQGRIRISALWKP  110 (111)
T ss_pred             cceeEECCCCCCCEEEEEEEEec
Confidence            68999999878899999999987

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=99.66  E-value=1.4e-15  Score=143.81  Aligned_cols=117  Identities=23%  Similarity=0.296  Sum_probs=95.4

Q ss_pred             EEEEEEEecC--CCCCCCCCCCCcEEEEEe-----CCeEEEeeeecCCCCCccceEEEEeeccCC-------CCceEEEE
Q 008661           68 ARVEVVEASD--MKPSDLNGLADPYVKGQL-----GPYRFRTKTQRKTLSPKWHEEFNIPISTWD-------SPNVLVIE  133 (558)
Q Consensus        68 L~VtVieArd--L~~~D~~G~sDPYVkV~L-----gp~k~KTkVikkTlNPvWnEtF~F~V~~~e-------~~~tL~V~  133 (558)
                      ..++|..|++  |+..+..+.+||||++++     .+++.||+++++|+||+|||+|.|.+....       ....|.|+
T Consensus         4 ~el~i~~~~~~~l~~~~~~~~~DpYVk~~l~~p~~~~~k~KT~v~k~TlnPvfNE~f~f~I~~~~~~~~R~l~~~~L~~~   83 (155)
T cd08690           4 IELTIVRCIGIPLPSGWNPKDLDTYVKFEFPYPNEEPQSGKTSTIKDTNSPEYNESFKLNINRKHRSFQRVFKRHGLKFE   83 (155)
T ss_pred             eEEEEEEeeccccCCCcCCCCCCeEEEEEEecCCCCCceeecCcccCCCCCcccceEEEEeccccchhhhhccCCcEEEE
Confidence            3445555555  778887889999999997     236899999999999999999999997421       14579999


Q ss_pred             EeecCCC-C-CCccEEEEEecccccCCCceeeeeecCC---CCceEEEEEEEEEec
Q 008661          134 VRDKDHF-V-DDTLGDCTINISDLRDGQRHDMWIPLQN---IKIGRLHLAITVLEE  184 (558)
Q Consensus       134 V~D~D~~-s-DDfIGev~IpL~eL~~~~~~e~W~~L~~---k~~GeL~LsL~y~p~  184 (558)
                      |||++.+ + |++||++.++|..+........|++|..   ...|.|++.++....
T Consensus        84 V~d~~~f~~~D~~iG~~~i~L~~l~~~~~~~~~~~L~~~~k~~Gg~l~v~ir~r~p  139 (155)
T cd08690          84 VYHKGGFLRSDKLLGTAQVKLEPLETKCEIHESVDLMDGRKATGGKLEVKVRLREP  139 (155)
T ss_pred             EEeCCCcccCCCeeEEEEEEcccccccCcceEEEEhhhCCCCcCCEEEEEEEecCC
Confidence            9999986 4 9999999999999988777778999874   346999999988653

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd08408 C2B_Synaptotagmin-14_16 C2 domain second repeat present in Synaptotagmins 14 and 16

Probab=99.65  E-value=7.8e-17  Score=148.79  Aligned_cols=113  Identities=16%  Similarity=0.161  Sum_probs=86.3

Q ss_pred             eEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661          173 GRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS  235 (558)
Q Consensus       173 GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~  235 (558)
                      |+|+++|.|.+..++                .+..|||||+++.+.  .++++.++||.++++++||+|| |.|.|. +.
T Consensus         2 ~ei~~sL~Y~~~~~~L~V~VikarnL~~~~~~~~~dpyVkv~llp~--~~~~~~~~kT~v~~~t~nPvfn-EtF~f~i~~   78 (138)
T cd08408           2 PELLLGLEYNALTGRLSVEVIKGSNFKNLAMNKAPDTYVKLTLLNS--DGQEISKSKTSIRRGQPDPEFK-ETFVFQVAL   78 (138)
T ss_pred             CeEEEEeEEcCCCCeEEEEEEEecCCCccccCCCCCeeEEEEEEeC--CCcceeeccceeecCCCCCcEe-eeEEEECCH
Confidence            456666666554433                234799999999543  2345678899999999999999 999999 88


Q ss_pred             CCCCCCceEEEEEeccC--cccc-ceE-E--ecCCccccccCccccCCCCCcccceeec
Q 008661          236 EKSPKVADNFEPINIEG--QQET-GIW-V--HQPGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       236 e~l~~v~leveV~D~dG--~~e~-Gv~-v--~~pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      +++...++.|+|||+++  .++. |-. +  ...|.+...||.+|+.+||+|+++||.+
T Consensus        79 ~~l~~~~L~~~V~~~~~~~~~~~iG~v~l~~~~~~~~~~~hW~~~l~~~~~~v~~WH~l  137 (138)
T cd08408          79 FQLSEVTLMFSVYNKRKMKRKEMIGWFSLGLNSSGEEEEEHWNEMKESKGQQVCRWHTL  137 (138)
T ss_pred             HHhCccEEEEEEEECCCCCCCcEEEEEEECCcCCCchHHHHHHHHHhCCCCEEeEeeec
Confidence            88999999999999984  3333 533 3  2334444589999999999999999964

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=99.65  E-value=6.5e-16  Score=139.52  Aligned_cols=115  Identities=29%  Similarity=0.391  Sum_probs=92.7

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k--~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      .|+|.|++|++|+.++..+.+||||++++++..  .+|+++++++||.|||+|.|.+.. .....|.|+|||++.++ ++
T Consensus         1 ~lrV~Vi~a~~L~~~d~~g~~DPYv~v~~~~~~~~~kT~~v~~t~nP~Wne~f~f~~~~-~~~~~L~~~V~d~d~~~~dd   79 (124)
T cd04037           1 LVRVYVVRARNLQPKDPNGKSDPYLKIKLGKKKINDRDNYIPNTLNPVFGKMFELEATL-PGNSILKISVMDYDLLGSDD   79 (124)
T ss_pred             CEEEEEEECcCCCCCCCCCCCCcEEEEEECCeeccceeeEEECCCCCccceEEEEEecC-CCCCEEEEEEEECCCCCCCc
Confidence            389999999999999999999999999998854  578889999999999999998764 24568999999999987 99


Q ss_pred             ccEEEEEecccccCCCceeeeeecCC--CCceEEEEEEEEEe
Q 008661          144 TLGDCTINISDLRDGQRHDMWIPLQN--IKIGRLHLAITVLE  183 (558)
Q Consensus       144 fIGev~IpL~eL~~~~~~e~W~~L~~--k~~GeL~LsL~y~p  183 (558)
                      +||++.++|.+... ..+..|.-+..  ...|.++....+.|
T Consensus        80 ~iG~~~i~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (124)
T cd04037          80 LIGETVIDLEDRFF-SKHRATCGLPPTYEESGPNQWRDSLKP  120 (124)
T ss_pred             eeEEEEEeeccccc-chHHHhccCCCcccccCceecCcccCc
Confidence            99999999998764 23333443332  24677777666554

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=99.65  E-value=1.7e-15  Score=141.46  Aligned_cols=92  Identities=32%  Similarity=0.611  Sum_probs=84.8

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCc
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDT  144 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDf  144 (558)
                      |.|+|+|++|++|+..+. +.+||||+++++.+.++|+++++++||+|||+|.|.+..  ....|.|+|||++.++ |++
T Consensus         2 G~L~V~Vi~a~nL~~~d~-~~sDPYV~v~~g~~~~kT~vvk~t~nP~WnE~f~f~i~~--~~~~l~~~V~D~d~~~~dd~   78 (145)
T cd04038           2 GLLKVRVVRGTNLAVRDF-TSSDPYVVLTLGNQKVKTRVIKKNLNPVWNEELTLSVPN--PMAPLKLEVFDKDTFSKDDS   78 (145)
T ss_pred             eEEEEEEEeeECCCCCCC-CCcCcEEEEEECCEEEEeeeEcCCCCCeecccEEEEecC--CCCEEEEEEEECCCCCCCCE
Confidence            789999999999999887 899999999999999999999999999999999999986  3678999999999998 999


Q ss_pred             cEEEEEecccccCCCc
Q 008661          145 LGDCTINISDLRDGQR  160 (558)
Q Consensus       145 IGev~IpL~eL~~~~~  160 (558)
                      ||.+.++|.++.....
T Consensus        79 iG~a~i~l~~l~~~~~   94 (145)
T cd04038          79 MGEAEIDLEPLVEAAK   94 (145)
T ss_pred             EEEEEEEHHHhhhhhh
Confidence            9999999999876543

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=99.64  E-value=2e-15  Score=136.58  Aligned_cols=110  Identities=24%  Similarity=0.437  Sum_probs=91.8

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      .+|.|+|++|+ |...+..+.+||||+++++.. ..+|+++++++||.|||+|.|.+..   ...|.|+|||++.++ ++
T Consensus         2 ~~L~V~i~~a~-l~~~~~~~~~dPyv~v~~~~~~~~kT~v~~~t~~P~Wne~f~~~~~~---~~~l~~~V~d~~~~~~~~   77 (125)
T cd04021           2 SQLQITVESAK-LKSNSKSFKPDPYVEVTVDGQPPKKTEVSKKTSNPKWNEHFTVLVTP---QSTLEFKVWSHHTLKADV   77 (125)
T ss_pred             ceEEEEEEeeE-CCCCCcCCCCCeEEEEEECCcccEEeeeeCCCCCCccccEEEEEeCC---CCEEEEEEEeCCCCCCCc
Confidence            36999999998 555555788999999999876 8999999999999999999999864   468999999999987 99


Q ss_pred             ccEEEEEecccccCCCc-----eeeeeecCCC------CceEEEEEE
Q 008661          144 TLGDCTINISDLRDGQR-----HDMWIPLQNI------KIGRLHLAI  179 (558)
Q Consensus       144 fIGev~IpL~eL~~~~~-----~e~W~~L~~k------~~GeL~LsL  179 (558)
                      +||++.++|.++.....     ...|++|...      ..|+|.+.+
T Consensus        78 ~iG~~~i~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~  124 (125)
T cd04021          78 LLGEASLDLSDILKNHNGKLENVKLTLNLSSENKGSSVKVGELTVIL  124 (125)
T ss_pred             EEEEEEEEHHHhHhhcCCCccceEEEEEEEccCCCcceeeeeEEEEe
Confidence            99999999999875432     3458888643      368887765

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>PLN03008 Phospholipase D delta

Probab=99.64  E-value=1.3e-15  Score=172.83  Aligned_cols=121  Identities=23%  Similarity=0.392  Sum_probs=106.0

Q ss_pred             CceEEEEEEEEecCCCCCCC------------------------------------------CCCCCcEEEEEeCCe-EE
Q 008661           64 PVAYARVEVVEASDMKPSDL------------------------------------------NGLADPYVKGQLGPY-RF  100 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~------------------------------------------~G~sDPYVkV~Lgp~-k~  100 (558)
                      =.|.|.|+|++|++|+.||.                                          .+++||||+|.|+.. ..
T Consensus        12 lhg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tSDPYV~I~Lg~~rv~   91 (868)
T PLN03008         12 LHGDLDLKIVKARRLPNMDMFSEHLRRLFTACNACARPTDTDDVDPRDKGEFGDKNIRSHRKVITSDPYVTVVVPQATLA   91 (868)
T ss_pred             eecccEEEEEEcccCCchhHHHHHHHhhcccccccccccccccccccccccccccccccccccCCCCceEEEEECCccee
Confidence            36899999999999986432                                          246799999999875 56


Q ss_pred             EeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeecCC------CCceE
Q 008661          101 RTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQN------IKIGR  174 (558)
Q Consensus       101 KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~------k~~Ge  174 (558)
                      ||+++++++||+|||+|.|.+..  ....|.|+|||+|.+++++||++.|||.+|..++..+.|++|.+      +..|+
T Consensus        92 RTrVi~n~~NPvWNE~F~f~vah--~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L~~Ge~vd~Wl~Ll~~~~kp~k~~~k  169 (868)
T PLN03008         92 RTRVLKNSQEPLWDEKFNISIAH--PFAYLEFQVKDDDVFGAQIIGTAKIPVRDIASGERISGWFPVLGASGKPPKAETA  169 (868)
T ss_pred             eEEeCCCCCCCCcceeEEEEecC--CCceEEEEEEcCCccCCceeEEEEEEHHHcCCCCceEEEEEccccCCCCCCCCcE
Confidence            99999999999999999999986  34689999999999999999999999999999999999999975      24589


Q ss_pred             EEEEEEEEeccC
Q 008661          175 LHLAITVLEESA  186 (558)
Q Consensus       175 L~LsL~y~p~~~  186 (558)
                      |+|+|.|.|...
T Consensus       170 l~v~lqf~pv~~  181 (868)
T PLN03008        170 IFIDMKFTPFDQ  181 (868)
T ss_pred             EEEEEEEEEccc
Confidence            999999999764

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=99.62  E-value=2e-15  Score=134.90  Aligned_cols=96  Identities=20%  Similarity=0.339  Sum_probs=85.2

Q ss_pred             EEEecCCCCCCCCCCCCcEEEEEeCCe-------EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC----C
Q 008661           72 VVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH----F  140 (558)
Q Consensus        72 VieArdL~~~D~~G~sDPYVkV~Lgp~-------k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~----~  140 (558)
                      .++|++|+..+..|.+||||++++.+.       .++|+++++++||+|||+|.|.+.. +..+.|.|+|||+|.    +
T Consensus         6 ~i~a~~L~~~d~~g~~DPyv~v~~~~~~~~~~~~~~kT~vi~~t~nP~wne~f~f~~~~-~~~~~l~~~V~d~d~~~~~~   84 (120)
T cd04048           6 SISCRNLLDKDVLSKSDPFVVVYVKTGGSGQWVEIGRTEVIKNNLNPDFVTTFTVDYYF-EEVQKLRFEVYDVDSKSKDL   84 (120)
T ss_pred             EEEccCCCCCCCCCCCCcEEEEEEEcCCCCceEEeccEeEeCCCCCCCceEEEEEEEEe-EeeeEEEEEEEEecCCcCCC
Confidence            589999999999999999999999664       4899999999999999999998653 345689999999997    6


Q ss_pred             C-CCccEEEEEecccccCCCceeeeeecC
Q 008661          141 V-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       141 s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      + +++||++.+++.+|..+.....|+.|.
T Consensus        85 ~~~d~iG~~~i~l~~l~~~~~~~~~~~l~  113 (120)
T cd04048          85 SDHDFLGEAECTLGEIVSSPGQKLTLPLK  113 (120)
T ss_pred             CCCcEEEEEEEEHHHHhcCCCcEEEEEcc
Confidence            5 999999999999999888888899994

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=99.62  E-value=6.1e-15  Score=136.53  Aligned_cols=109  Identities=27%  Similarity=0.365  Sum_probs=91.0

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------------eEEEeeeecCCCCCcc-ceEEEEeeccCCCCceEEE
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-------------YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVI  132 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-------------~k~KTkVikkTlNPvW-nEtF~F~V~~~e~~~tL~V  132 (558)
                      .+.|++++|++|+ ++..|.+||||++++.+             ++++|+++++++||+| ||+|.|.+..   .+.|.|
T Consensus         2 ~~~~~~~~A~~L~-~~~fg~~DPyvki~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~W~nE~f~f~v~~---~~~L~v   77 (137)
T cd08691           2 SFSLSGLQARNLK-KGMFFNPDPYVKISIQPGKRHIFPALPHHGQECRTSIVENTINPVWHREQFVFVGLP---TDVLEI   77 (137)
T ss_pred             EEEEEEEEeCCCC-CccCCCCCceEEEEEECCCcccccccccccceeeeeeEcCCCCCceEceEEEEEcCC---CCEEEE
Confidence            4689999999998 77789999999999954             3689999999999999 9999999864   468999


Q ss_pred             EEeecCCCC----CCccEEEEEecccccCCC---ceeeeeecCCC-----CceEEEEEE
Q 008661          133 EVRDKDHFV----DDTLGDCTINISDLRDGQ---RHDMWIPLQNI-----KIGRLHLAI  179 (558)
Q Consensus       133 ~V~D~D~~s----DDfIGev~IpL~eL~~~~---~~e~W~~L~~k-----~~GeL~LsL  179 (558)
                      +|||++..+    +++||++.++|.++..+.   ....|++|...     ..|+|.|.+
T Consensus        78 ~V~D~~~~~~~~~~d~lG~~~i~l~~l~~~~~~~~~~~~~~l~k~~~~s~v~G~~~l~~  136 (137)
T cd08691          78 EVKDKFAKSRPIIRRFLGKLSIPVQRLLERHAIGDQELSYTLGRRTPTDHVSGQLTFRF  136 (137)
T ss_pred             EEEecCCCCCccCCceEEEEEEEHHHhcccccCCceEEEEECCcCCCCCcEEEEEEEEe
Confidence            999986532    689999999999996553   36779999853     358887765

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd08410 C2B_Synaptotagmin-17 C2 domain second repeat present in Synaptotagmin 17

Probab=99.61  E-value=7.8e-16  Score=140.95  Aligned_cols=112  Identities=17%  Similarity=0.168  Sum_probs=85.1

Q ss_pred             eEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC
Q 008661          173 GRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS  235 (558)
Q Consensus       173 GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~  235 (558)
                      |+|+|+|+|.+..+.                .+.+||||++++..   +.+..+++||.++++|+||+|| |.|.|. +.
T Consensus         1 G~i~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~DPyV~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-E~F~f~i~~   76 (135)
T cd08410           1 GELLLSLNYLPSAGRLNVDIIRAKQLLQTDMSQGSDPFVKIQLVH---GLKLIKTKKTSCMRGTIDPFYN-ESFSFKVPQ   76 (135)
T ss_pred             CcEEEEEEECCCCCeEEEEEEEecCCCcccCCCCCCeEEEEEEEc---CCcccceEcCccccCCCCCccc-eeEEEeCCH
Confidence            667777777655432                23489999999833   3455677999999999999999 999999 67


Q ss_pred             CCCCCCceEEEEEeccCc--ccc-ceE-Ee--cCCccccccCccccCCCCCcccceeec
Q 008661          236 EKSPKVADNFEPINIEGQ--QET-GIW-VH--QPGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       236 e~l~~v~leveV~D~dG~--~e~-Gv~-v~--~pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      +++....+.|+|||++..  ++. |-. ++  ..|.....||..|+.+|++|+++||.+
T Consensus        77 ~~l~~~~l~~~V~d~d~~~~~~~iG~~~l~~~~~~~~~~~~W~~l~~~~~~~~~~wh~l  135 (135)
T cd08410          77 EELENVSLVFTVYGHNVKSSNDFIGRIVIGQYSSGPSETNHWRRMLNSQRTAVEQWHSL  135 (135)
T ss_pred             HHhCCCEEEEEEEeCCCCCCCcEEEEEEEcCccCCchHHHHHHHHHhCCCCEeeEeecC
Confidence            778888999999999843  333 533 22  233334589999999999999999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=99.59  E-value=1.9e-14  Score=134.79  Aligned_cols=112  Identities=17%  Similarity=0.276  Sum_probs=95.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE-EEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC-C---
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH-F---  140 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k-~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~-~---  140 (558)
                      ..|.|.|++|++|++++     +|||.|.|+..+ .||+++.++.||.|+|.|.|....  ....|.|.||..+. .   
T Consensus        11 ~sL~v~V~EAk~Lp~~~-----~~Y~~i~Ld~~~vaRT~v~~~~~nP~W~E~F~f~~~~--~~~~l~v~v~k~~~~~~~~   83 (146)
T cd04013          11 NSLKLWIIEAKGLPPKK-----RYYCELCLDKTLYARTTSKLKTDTLFWGEHFEFSNLP--PVSVITVNLYRESDKKKKK   83 (146)
T ss_pred             EEEEEEEEEccCCCCcC-----CceEEEEECCEEEEEEEEEcCCCCCcceeeEEecCCC--cccEEEEEEEEccCccccc
Confidence            57999999999998865     799999999866 599999999999999999997654  34689999986542 2   


Q ss_pred             -CCCccEEEEEecccccCCCceeeeeecCCC-------------CceEEEEEEEEEec
Q 008661          141 -VDDTLGDCTINISDLRDGQRHDMWIPLQNI-------------KIGRLHLAITVLEE  184 (558)
Q Consensus       141 -sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-------------~~GeL~LsL~y~p~  184 (558)
                       ++++||.+.||+..+..+...+.||+|.+.             ..+.|+++++|.+.
T Consensus        84 ~~~~~IG~V~Ip~~~l~~~~~ve~Wfpl~~~~~~~~~~~~~~~~~~~~lrik~rf~~~  141 (146)
T cd04013          84 DKSQLIGTVNIPVTDVSSRQFVEKWYPVSTPKGNGKSGGKEGKGESPSIRIKARYQST  141 (146)
T ss_pred             cCCcEEEEEEEEHHHhcCCCcccEEEEeecCCCCCccccccccCCCCEEEEEEEEEEe
Confidence             378999999999999998889999999752             23689999999875

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>cd08402 C2B_Synaptotagmin-1 C2 domain second repeat present in Synaptotagmin 1

Probab=99.58  E-value=2.6e-15  Score=136.87  Aligned_cols=112  Identities=19%  Similarity=0.251  Sum_probs=85.9

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      .|+|+++|.|.+..+.                .+.+||||++++..   ++++..++||.++++++||+|| |.|.|. +
T Consensus         1 ~G~l~~~l~y~~~~~~l~V~Vi~a~~L~~~d~~g~~dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~i~   76 (136)
T cd08402           1 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ---NGKRLKKKKTTIKKRTLNPYYN-ESFSFEVP   76 (136)
T ss_pred             CcEEEEEeEEcCCCCeEEEEEEEeeCCCcccCCCCCCCeEEEEEEE---CCcccceeeccceeCCCCCccc-ceEEEECC
Confidence            3677777777665543                23489999999943   3456677899999999999999 999999 6


Q ss_pred             CCCCCCCceEEEEEeccC--cccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661          235 SEKSPKVADNFEPINIEG--QQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG--~~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      ..++....+.++|||++.  .++. |-.   +...|.+ ..||.+|+..|+.|++|||..
T Consensus        77 ~~~l~~~~l~~~v~d~~~~~~~~~iG~~~i~~~~~~~~-~~~W~~~~~~~~~~~~~wh~~  135 (136)
T cd08402          77 FEQIQKVHLIVTVLDYDRIGKNDPIGKVVLGCNATGAE-LRHWSDMLASPRRPIAQWHTL  135 (136)
T ss_pred             HHHhCCCEEEEEEEeCCCCCCCceeEEEEECCccCChH-HHHHHHHHhCCCCeeeEEEEc
Confidence            667777889999999984  3443 533   3344443 489999999999999999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of the class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis. It, like synaptotagmin-2, has an N-glycosylated N-terminus. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are:

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=99.57  E-value=3.4e-14  Score=126.82  Aligned_cols=111  Identities=23%  Similarity=0.475  Sum_probs=92.3

Q ss_pred             EEEEEEEEecCCCCCC--CCCCCCcEEEEEeC------CeEEEeeeecCCC-CCccceEEEEeeccCCCCceEEEEEeec
Q 008661           67 YARVEVVEASDMKPSD--LNGLADPYVKGQLG------PYRFRTKTQRKTL-SPKWHEEFNIPISTWDSPNVLVIEVRDK  137 (558)
Q Consensus        67 ~L~VtVieArdL~~~D--~~G~sDPYVkV~Lg------p~k~KTkVikkTl-NPvWnEtF~F~V~~~e~~~tL~V~V~D~  137 (558)
                      .|+|+|++|++|+.++  ..+.+||||++++.      ..+++|+++.++. ||.|||+|.|.+... ....|.|+|||+
T Consensus         3 ~l~v~vi~a~~L~~~~~~~~~~~dpyv~v~l~~~~~~~~~~~kT~~~~~~~~~P~w~e~f~f~~~~~-~~~~l~~~V~d~   81 (128)
T cd00275           3 TLTIKIISGQQLPKPKGDKGSIVDPYVEVEIHGLPADDSAKFKTKVVKNNGFNPVWNETFEFDVTVP-ELAFLRFVVYDE   81 (128)
T ss_pred             EEEEEEEeeecCCCCCCCCCCccCCEEEEEEEeCCCCCCCcEeeeeecCCCcCCccCCcEEEEEeCC-CeEEEEEEEEeC
Confidence            6999999999999888  57889999999993      4568999988765 999999999998842 345799999999


Q ss_pred             CCCCCCccEEEEEecccccCCCceeeeeecCC-----CCceEEEEEEEE
Q 008661          138 DHFVDDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITV  181 (558)
Q Consensus       138 D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~-----k~~GeL~LsL~y  181 (558)
                      +..++++||.+.++|.++..+   ..|++|..     ...|.|.+.+++
T Consensus        82 ~~~~~~~iG~~~~~l~~l~~g---~~~~~l~~~~~~~~~~~~l~v~~~~  127 (128)
T cd00275          82 DSGDDDFLGQACLPLDSLRQG---YRHVPLLDSKGEPLELSTLFVHIDI  127 (128)
T ss_pred             CCCCCcEeEEEEEEhHHhcCc---eEEEEecCCCCCCCcceeEEEEEEE
Confidence            988889999999999998654   35788864     235788888765

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>cd08403 C2B_Synaptotagmin-3-5-6-9-10 C2 domain second repeat present in Synaptotagmins 3, 5, 6, 9, and 10

Probab=99.57  E-value=3.1e-15  Score=136.10  Aligned_cols=95  Identities=16%  Similarity=0.248  Sum_probs=75.3

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEecc--Ccccc-ceE-E--e
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIE--GQQET-GIW-V--H  261 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~d--G~~e~-Gv~-v--~  261 (558)
                      +.+||||++++..   .+++.+++||.++++++||+|| |.|.|. +.+.+....+.|+|||++  |.++. |.+ +  .
T Consensus        33 g~~dpyvkv~l~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~i~~~~~~~~~l~~~v~d~~~~~~~~~IG~~~l~~~  108 (134)
T cd08403          33 GFSDPYVKVSLMC---EGRRLKKKKTSVKKNTLNPTYN-EALVFDVPPENVDNVSLIIAVVDYDRVGHNELIGVCRVGPN  108 (134)
T ss_pred             CCCCceEEEEEEe---CCcccceecCCcccCCCCCccc-ceEEEECCHHHhCCCEEEEEEEECCCCCCCceeEEEEECCC
Confidence            4489999999943   3556778899999999999999 999998 666677778999999998  44444 644 2  2


Q ss_pred             cCCccccccCccccCCCCCcccceeec
Q 008661          262 QPGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       262 ~pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      .++.+ ..||.+|+.+|++|++|||.+
T Consensus       109 ~~~~~-~~~w~~~~~~~~~~~~~wh~~  134 (134)
T cd08403         109 ADGQG-REHWNEMLANPRKPIAQWHQL  134 (134)
T ss_pred             CCCch-HHHHHHHHHCCCCeeeEeecC
Confidence            33333 479999999999999999964

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 3, a member of class 3 synaptotagmins, is located in the brain and localized to the active zone and plasma membrane. It functions as a Ca2+ sensor for fast exocytosis. It, along with synaptotagmins 5,6, and 10, has disulfide bonds at its N-terminus. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and localized to the synaptic vesicles. It is thought to be a Ca2+-sensor for dense-core vesicle exocytosis. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=99.55  E-value=4.5e-14  Score=127.84  Aligned_cols=93  Identities=26%  Similarity=0.381  Sum_probs=75.0

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeec-----
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDK-----  137 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~-----  137 (558)
                      |.|+|++|+||+     +.+||||++++.+     .+++|+++++|+||+|||+|.|.+..   .++|.+.|||+     
T Consensus         1 L~V~V~~A~~L~-----~~sDPYV~l~v~~~~~~~~~~KTk~i~~TlnPvWnE~F~i~l~~---s~~L~~~v~d~~~~~~   72 (118)
T cd08686           1 LNVIVHSAQGFK-----QSANLYCTLEVDSFGYFVKKAKTRVCRDTTEPNWNEEFEIELEG---SQTLRILCYEKCYSKV   72 (118)
T ss_pred             CEEEEEeCCCCC-----CCCCCEEEEEEcCccccceeeeeeeecCCCCCccceEEEEEeCC---CCEEEEEEEEcccccc
Confidence            689999999995     5699999999965     35899999999999999999999863   67999999998     


Q ss_pred             --CCCC-CCccEEEEEeccc--ccCCCceeeeeecC
Q 008661          138 --DHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ  168 (558)
Q Consensus       138 --D~~s-DDfIGev~IpL~e--L~~~~~~e~W~~L~  168 (558)
                        |..+ |++||.+.+.|+.  +.....+...+.|.
T Consensus        73 ~~d~~~~d~~~G~g~i~Ld~~~~~~~~~~~~~~~~~  108 (118)
T cd08686          73 KLDGEGTDAIMGKGQIQLDPQSLQTKKWQEKVISMN  108 (118)
T ss_pred             cccccCcccEEEEEEEEECHHHhccCCeeEEEEEec
Confidence              4555 9999888887764  33334455556554

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.55  E-value=1.3e-14  Score=177.05  Aligned_cols=119  Identities=22%  Similarity=0.248  Sum_probs=106.4

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV  141 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s  141 (558)
                      .-.|.|+|+|++|.||.  +..|.+||||++.++++ +.||++++++.||+|||+|.|.+...+..+.|+|+|||+|.|+
T Consensus      1977 ~~~G~L~V~V~~a~nl~--~~~~~sdPyv~l~~g~~~~~kTkvvk~~~nP~Wne~f~~~~~~p~~~~~l~iev~d~d~f~ 2054 (2102)
T PLN03200       1977 CLPGSLTVTIKRGNNLK--QSMGNTNAFCKLTLGNGPPRQTKVVSHSSSPEWKEGFTWAFDSPPKGQKLHISCKSKNTFG 2054 (2102)
T ss_pred             hCCcceEEEEeeccccc--cccCCCCCeEEEEECCCCcccccccCCCCCCCcccceeeeecCCCCCCceEEEEEecCccC
Confidence            34699999999999998  44789999999999975 7899999999999999999988886555678999999999999


Q ss_pred             CCccEEEEEecccccCCCceeeeeecCC--CCceE---EEEEEEEEe
Q 008661          142 DDTLGDCTINISDLRDGQRHDMWIPLQN--IKIGR---LHLAITVLE  183 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~~~~e~W~~L~~--k~~Ge---L~LsL~y~p  183 (558)
                      ++.||.+.|+|.++..++....||+|.+  .+.|+   |++.+.|.+
T Consensus      2055 kd~~G~~~i~l~~vv~~~~~~~~~~L~~~~~k~G~~~~~~~e~~w~~ 2101 (2102)
T PLN03200       2055 KSSLGKVTIQIDRVVMEGTYSGEYSLNPESNKDGSSRTLEIEFQWSN 2101 (2102)
T ss_pred             CCCCceEEEEHHHHhcCceeeeeeecCcccccCCCcceEEEEEEecC
Confidence            8899999999999999999999999987  56788   999998864

>cd08404 C2B_Synaptotagmin-4 C2 domain second repeat present in Synaptotagmin 4

Probab=99.54  E-value=9.3e-15  Score=133.41  Aligned_cols=112  Identities=20%  Similarity=0.242  Sum_probs=85.9

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      +|+|.|+++|.+....                .+.+||||++++..   ++++..++||.++++++||+|| |.|.|. +
T Consensus         1 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~d~~g~~Dpyv~v~l~~---~~~~~~~~kT~v~k~t~nP~w~-e~F~f~v~   76 (136)
T cd08404           1 RGELLLSLCYQPTTNRLTVVVLKARHLPKMDVSGLADPYVKVNLYY---GKKRISKKKTHVKKCTLNPVFN-ESFVFDIP   76 (136)
T ss_pred             CCeEEEEEEEeCCCCeEEEEEEEeeCCCccccCCCCCeEEEEEEEc---CCceeeeEcCccccCCCCCccC-ceEEEECC
Confidence            4677777777654332                23479999999943   3556678899999999999999 999999 7


Q ss_pred             CCCCCCCceEEEEEeccCc--ccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661          235 SEKSPKVADNFEPINIEGQ--QET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG~--~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      ..++....++|+|||++..  .+. |-.   +...+. ...||.++...|++|+++||.+
T Consensus        77 ~~~~~~~~l~~~v~d~d~~~~~~~iG~~~~~~~~~~~-~~~~w~~l~~~~~~~i~~Wh~l  135 (136)
T cd08404          77 SEELEDISVEFLVLDSDRVTKNEVIGRLVLGPKASGS-GGHHWKEVCNPPRRQIAEWHML  135 (136)
T ss_pred             HHHhCCCEEEEEEEECCCCCCCccEEEEEECCcCCCc-hHHHHHHHHhCCCCeeeEEEec
Confidence            7777888999999999843  333 533   333333 3589999999999999999975

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 4, a member of class 4 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmin-11, has an Asp to Ser substitution in its C2A domain. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling s

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=99.52  E-value=5.8e-14  Score=123.07  Aligned_cols=90  Identities=24%  Similarity=0.422  Sum_probs=76.3

Q ss_pred             EEEEEEecCCCCCCCCCCCCcEEEEEeCCe------EEEeeeecCCCCCccceEEEEeeccC---CCCceEEEEEeecCC
Q 008661           69 RVEVVEASDMKPSDLNGLADPYVKGQLGPY------RFRTKTQRKTLSPKWHEEFNIPISTW---DSPNVLVIEVRDKDH  139 (558)
Q Consensus        69 ~VtVieArdL~~~D~~G~sDPYVkV~Lgp~------k~KTkVikkTlNPvWnEtF~F~V~~~---e~~~tL~V~V~D~D~  139 (558)
                      .+-.++|++|+.++..+.+||||+|++.+.      .++|+++++++||+|| +|.|.+...   +....|.|+|||++.
T Consensus         3 ~~~~i~a~~L~~~d~~~~~DPyv~v~~~~~~~~~~~~~kT~vi~~t~nP~Wn-~f~~~~~~l~~~~~~~~l~~~V~d~d~   81 (110)
T cd04047           3 VELQFSGKKLDKKDFFGKSDPFLEISRQSEDGTWVLVYRTEVIKNTLNPVWK-PFTIPLQKLCNGDYDRPIKIEVYDYDS   81 (110)
T ss_pred             EEEEEEeCCCCCCCCCCCCCeeEEEEEECCCCCEEEEEeeeEeccCCCCceE-EEEEEHHHhcCCCcCCEEEEEEEEeCC
Confidence            344679999999999999999999998542      5899999999999999 788876532   225799999999999


Q ss_pred             CC-CCccEEEEEecccccCCC
Q 008661          140 FV-DDTLGDCTINISDLRDGQ  159 (558)
Q Consensus       140 ~s-DDfIGev~IpL~eL~~~~  159 (558)
                      ++ |++||++.++|.+|...+
T Consensus        82 ~~~d~~iG~~~~~l~~l~~~~  102 (110)
T cd04047          82 SGKHDLIGEFETTLDELLKSS  102 (110)
T ss_pred             CCCCcEEEEEEEEHHHHhcCC
Confidence            97 999999999999998543

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08405 C2B_Synaptotagmin-7 C2 domain second repeat present in Synaptotagmin 7

Probab=99.52  E-value=9e-15  Score=133.37  Aligned_cols=112  Identities=17%  Similarity=0.165  Sum_probs=84.9

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      +|+|+|+|+|.+....                .+.+||||++++..   ++.+..++||.++++++||+|| |.|.|. +
T Consensus         1 ~G~l~~sl~y~~~~~~L~v~vi~a~~L~~~~~~g~~dpyV~v~l~~---~~~~~~~~kT~v~~~t~~P~wn-e~F~f~i~   76 (136)
T cd08405           1 RGELLLSLCYNPTANRITVNIIKARNLKAMDINGTSDPYVKVWLMY---KDKRVEKKKTVIKKRTLNPVFN-ESFIFNIP   76 (136)
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCccccCCCCCceEEEEEEe---CCCccccccCcceeCCCCCccc-ceEEEeCC
Confidence            3677777777665433                23489999999943   3445567899999999999999 999999 6


Q ss_pred             CCCCCCCceEEEEEeccC--cccc-ceE---EecCCccccccCccccCCCCCcccceeec
Q 008661          235 SEKSPKVADNFEPINIEG--QQET-GIW---VHQPGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG--~~e~-Gv~---v~~pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      .+.+....+.|+|||++.  .++. |-.   +...|. ..+||.+|+..|.+|+++||..
T Consensus        77 ~~~~~~~~l~~~v~d~~~~~~~~~lG~~~i~~~~~~~-~~~~w~~~~~~~~~~~~~wh~l  135 (136)
T cd08405          77 LERLRETTLIITVMDKDRLSRNDLIGKIYLGWKSGGL-ELKHWKDMLSKPRQPVAQWHRL  135 (136)
T ss_pred             HHHhCCCEEEEEEEECCCCCCCcEeEEEEECCccCCc-hHHHHHHHHhCCCCchhEEEec
Confidence            667777889999999984  3443 543   233333 3589999999999999999974

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08384 C2B_Rabphilin_Doc2 C2 domain second repeat present in Rabphilin and Double C2 domain

Probab=99.49  E-value=3.5e-14  Score=128.67  Aligned_cols=96  Identities=10%  Similarity=0.064  Sum_probs=74.1

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC--cccc-ceE-EecC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GIW-VHQP  263 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG--~~e~-Gv~-v~~p  263 (558)
                      +.+||||++++...   +.+..++||.++++++||+|| |.|.|. +..++....+.|+|||++.  .++. |.. +...
T Consensus        32 ~~~DpyV~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~~~~~~l~~~~l~~~V~d~d~~~~~~~lG~~~i~l~  107 (133)
T cd08384          32 GYSDPFVKLYLKPD---AGKKSKHKTQVKKKTLNPEFN-EEFFYDIKHSDLAKKTLEITVWDKDIGKSNDYIGGLQLGIN  107 (133)
T ss_pred             CCCCcEEEEEEEcC---CCccCCceeeeEeccCCCCcc-cEEEEECCHHHhCCCEEEEEEEeCCCCCCccEEEEEEEecC
Confidence            45899999999543   344567899999999999999 999999 6566777899999999883  3333 544 3222


Q ss_pred             Cc-cccccCccccCCCCCcccceeec
Q 008661          264 GS-EVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       264 gt-~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      .. +...||-+|+.+|++|+++||.+
T Consensus       108 ~~~~~~~~W~~~l~~~~~~~~~wh~l  133 (133)
T cd08384         108 AKGERLRHWLDCLKNPDKKIEAWHTL  133 (133)
T ss_pred             CCCchHHHHHHHHhCCCCChheeecC
Confidence            22 23489999999999999999963

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domai

>cd08677 C2A_Synaptotagmin-13 C2 domain

Probab=99.47  E-value=7.2e-14  Score=126.58  Aligned_cols=96  Identities=10%  Similarity=0.084  Sum_probs=71.1

Q ss_pred             eEEEEEEEEEeccCC-------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCC
Q 008661          173 GRLHLAITVLEESAK-------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKS  238 (558)
Q Consensus       173 GeL~LsL~y~p~~~~-------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l  238 (558)
                      |+|+++|+|.+..++             .+.+|||||++|.+   ..+ .+|+||.|+++|+||+|| |.|.|. +.+++
T Consensus         1 ~~l~fsL~Y~~~~~~L~V~vikA~~L~~~g~sDPYVKv~L~~---~~k-~~k~kT~v~rktlnPvfn-E~f~F~v~~~~l   75 (118)
T cd08677           1 PKLHYSLSYDKQKAELHVNILEAENISVDAGCECYISGCVSV---SEG-QKEAQTALKKLALHTQWE-EELVFPLPEEES   75 (118)
T ss_pred             CeEEEEEEEcCcCCEEEEEEEEecCCCCCCCCCeEEEEEEcC---CcC-ccEEEcceecCCCCCccc-cEEEEeCCHHHh
Confidence            456777777666543             23389999999943   233 457799999999999999 999999 99999


Q ss_pred             CCCceEEEEEecc--Ccccc-ceE-EecC---CccccccCcc
Q 008661          239 PKVADNFEPINIE--GQQET-GIW-VHQP---GSEVAQTWEP  273 (558)
Q Consensus       239 ~~v~leveV~D~d--G~~e~-Gv~-v~~p---gt~~~~hW~~  273 (558)
                      +..++.++|||+|  +.++. |-. +...   .+...+||.+
T Consensus        76 ~~~tL~~~V~d~Drfs~~d~IG~v~l~l~~~~~~~~~~~W~~  117 (118)
T cd08677          76 LDGTLTLTLRCCDRFSRHSTLGELRLKLADVSMMLGAAQWVD  117 (118)
T ss_pred             CCcEEEEEEEeCCCCCCCceEEEEEEccccccCCccccchhc
Confidence            9999999999999  44554 543 2211   1223479976

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 13, a member of class 6 synaptotagmins, is located in the brain. It functions are unknown. It, like synaptotagmins 8 and 12, does not have any consensus Ca2+ binding sites. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domain

>KOG1028 consensus Ca2+-dependent phospholipid-binding protein Synaptotagmin, required for synaptic vesicle and secretory granule exocytosis [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.46  E-value=1.4e-13  Score=148.59  Aligned_cols=113  Identities=27%  Similarity=0.426  Sum_probs=97.4

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~-  126 (558)
                      |++.|+|.|.+..|.|+|.|++|++|+.++..+.+||||++++..     .+.+|.++++++||+|||+|.|.|+.... 
T Consensus       285 gel~~sL~Y~p~~g~ltv~v~kar~L~~~~~~~~~d~~Vk~~l~~~~~~~~kkkT~~~~~~~npv~nesf~F~vp~~~l~  364 (421)
T KOG1028|consen  285 GELLLSLCYLPTAGRLTVVVIKARNLKSMDVGGLSDPYVKVTLLDGDKRLSKKKTSVKKKTLNPVFNETFVFDVPPEQLA  364 (421)
T ss_pred             ceEEEEEEeecCCCeEEEEEEEecCCCcccCCCCCCccEEEEEecCCceeeeeeeecccCCCCCcccccEEEeCCHHHhh
Confidence            689999999999999999999999999999999999999999954     46799999999999999999999985433 


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeec
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL  167 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L  167 (558)
                      ...|.|+|||+|.++ +++||.|.+....  .+....+|..+
T Consensus       365 ~~~l~l~V~d~d~~~~~~~iG~~~lG~~~--~~~~~~hW~~m  404 (421)
T KOG1028|consen  365 EVSLELTVWDHDTLGSNDLIGRCILGSDS--TGEEVRHWQEM  404 (421)
T ss_pred             eeEEEEEEEEcccccccceeeEEEecCCC--CchHHHHHHHH
Confidence            348999999999998 8899999998876  22234455544

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=99.42  E-value=4.8e-13  Score=109.23  Aligned_cols=81  Identities=35%  Similarity=0.644  Sum_probs=72.7

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      |+|+|++|++|+..+..+.++|||++++..   ..++|++++++.+|.|+|+|.|.+...+ ...|.|+|||++.++ ++
T Consensus         1 L~v~I~~a~~L~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~~~V~~~~~~~~~~   79 (85)
T PF00168_consen    1 LTVTIHSARNLPSKDSNGKPDPYVRVSVNGSESTKYKTKVKKNTSNPVWNEEFEFPLDDPD-LDSLSFEVWDKDSFGKDE   79 (85)
T ss_dssp             EEEEEEEEESSSSSSTTSSBEEEEEEEEETTTCEEEEECCBSSBSSEEEEEEEEEEESHGC-GTEEEEEEEEETSSSSEE
T ss_pred             CEEEEEEEECCCCcccCCcccccceeecceeeeeeeeeeeeeccccceeeeeeeeeeeccc-ccceEEEEEECCCCCCCC
Confidence            789999999999988888999999999977   6799999999999999999999977533 345999999999998 99


Q ss_pred             ccEEEE
Q 008661          144 TLGDCT  149 (558)
Q Consensus       144 fIGev~  149 (558)
                      +||++.
T Consensus        80 ~iG~~~   85 (85)
T PF00168_consen   80 LIGEVK   85 (85)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999974

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>cd00276 C2B_Synaptotagmin C2 domain second repeat present in Synaptotagmin

Probab=99.38  E-value=4.3e-13  Score=120.62  Aligned_cols=94  Identities=15%  Similarity=0.199  Sum_probs=73.8

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC--cccc-ceE---Eec
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GIW---VHQ  262 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG--~~e~-Gv~---v~~  262 (558)
                      ..||||++++...   +....++||.+++++.||+|| |.|.|. +...+....+.|+|||++.  .++. |.+   +..
T Consensus        34 ~~dpyv~v~l~~~---~~~~~~~~T~~~~~~~~P~wn-e~f~f~i~~~~l~~~~l~~~v~d~~~~~~~~~lG~~~i~l~~  109 (134)
T cd00276          34 LSDPYVKVSLLQG---GKKLKKKKTSVKKGTLNPVFN-EAFSFDVPAEQLEEVSLVITVVDKDSVGRNEVIGQVVLGPDS  109 (134)
T ss_pred             CCCcEEEEEEEcC---CeEeeeecCcceecCCCCeee-eeEEEECCHHHhCCcEEEEEEEecCCCCCCceeEEEEECCCC
Confidence            4799999999443   455677899999999999999 999999 5556667889999999885  3333 544   333


Q ss_pred             CCccccccCccccCCCCCcccceeec
Q 008661          263 PGSEVAQTWEPRKGKNRRLDTLVRRV  288 (558)
Q Consensus       263 pgt~~~~hW~~~l~~~r~~~~q~~~~  288 (558)
                      .+. ...||.+++.+|+.++++||++
T Consensus       110 ~~~-~~~~W~~l~~~~~~~~~~wh~~  134 (134)
T cd00276         110 GGE-ELEHWNEMLASPRKPIARWHKL  134 (134)
T ss_pred             CCc-HHHHHHHHHhCCCCceEEeeeC
Confidence            222 3489999999999999999984

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. There are several classes of Synaptotagmins. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distin

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=4.2e-13  Score=146.46  Aligned_cols=189  Identities=23%  Similarity=0.375  Sum_probs=145.8

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC-----
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF-----  140 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~-----  140 (558)
                      ..++++|+.|++|.++|..|.+||||.+.++..+.+|+++...+||+|||.|.|...+  ....+.+.|||.|.-     
T Consensus       295 akitltvlcaqgl~akdktg~sdpyvt~qv~ktkrrtrti~~~lnpvw~ekfhfechn--stdrikvrvwded~dlkskl  372 (1283)
T KOG1011|consen  295 AKITLTVLCAQGLIAKDKTGKSDPYVTAQVGKTKRRTRTIHQELNPVWNEKFHFECHN--STDRIKVRVWDEDNDLKSKL  372 (1283)
T ss_pred             eeeEEeeeecccceecccCCCCCCcEEEeecccchhhHhhhhccchhhhhheeeeecC--CCceeEEEEecCcccHHHHH
Confidence            4689999999999999999999999999999999999999999999999999999987  567899999998742     


Q ss_pred             -------CCCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEEeccCCCCCCCCcceEEecccCCCCce
Q 008661          141 -------VDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKE  208 (558)
Q Consensus       141 -------sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~kr  208 (558)
                             +|||||+..|.+..|..  ..+.||.|+.+     ..|.|+|.|...-..+..  .-||...|-         
T Consensus       373 rqkl~resddflgqtvievrtlsg--emdvwynlekrtdksavsgairlhisveikgeek--vapyhvqyt---------  439 (1283)
T KOG1011|consen  373 RQKLTRESDDFLGQTVIEVRTLSG--EMDVWYNLEKRTDKSAVSGAIRLHISVEIKGEEK--VAPYHVQYT---------  439 (1283)
T ss_pred             HHHhhhcccccccceeEEEEeccc--chhhhcchhhccchhhccceEEEEEEEEEcCccc--cccceeeeh---------
Confidence                   38999999999998764  47899999863     468888888776543321  126665322         


Q ss_pred             eeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCccccceEEecCCccccccCccccC---------CCC
Q 008661          209 DQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQPGSEVAQTWEPRKG---------KNR  279 (558)
Q Consensus       209 lkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e~Gv~v~~pgt~~~~hW~~~l~---------~~r  279 (558)
                            ....         .-|.|. .+.     -++.+-+..|...+.+|....++++...+..|.|         +--
T Consensus       440 ------clhe---------nlfh~~-~~~-----~~vkip~argddawkv~fdetaqeivdefamrygiesiyqamthfa  498 (1283)
T KOG1011|consen  440 ------CLHE---------NLFHAH-TDD-----GEVKIPKARGDDAWKVYFDETAQEIVDEFAMRYGIESIYQAMTHFA  498 (1283)
T ss_pred             ------hHhh---------hhHHhh-hcc-----cceeCCccCCCccceehhhhhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence                  1111         223333 111     2344456667777789988999998888888887         457


Q ss_pred             CcccceeecCC
Q 008661          280 RLDTLVRRVPN  290 (558)
Q Consensus       280 ~~~~q~~~~~~  290 (558)
                      |+.+++.|+|-
T Consensus       499 cl~skymcpgv  509 (1283)
T KOG1011|consen  499 CLSSKYMCPGV  509 (1283)
T ss_pred             HHhhcccCCCc
Confidence            88899999883

>cd00030 C2 C2 domain

Probab=99.34  E-value=9e-12  Score=102.12  Aligned_cols=99  Identities=44%  Similarity=0.831  Sum_probs=87.4

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCcc
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTL  145 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfI  145 (558)
                      |.|.|++|++|........++|||.+.+.. ..++|.++.++.||.|++.|.|.+... ....|.|+||+.+... +.+|
T Consensus         1 l~v~i~~~~~l~~~~~~~~~~~~v~v~~~~~~~~~T~~~~~~~~P~w~~~~~~~~~~~-~~~~l~i~v~~~~~~~~~~~i   79 (102)
T cd00030           1 LRVTVIEARNLPAKDLNGKSDPYVKVSLGGKQKFKTKVVKNTLNPVWNETFEFPVLDP-ESDTLTVEVWDKDRFSKDDFL   79 (102)
T ss_pred             CEEEEEeeeCCCCcCCCCCCCcEEEEEeccCceEecceeCCCCCCcccceEEEEccCC-CCCEEEEEEEecCCCCCCcee
Confidence            578999999998876678899999999988 889999999999999999999998852 3568999999999887 8899


Q ss_pred             EEEEEeccccc-CCCceeeeeec
Q 008661          146 GDCTINISDLR-DGQRHDMWIPL  167 (558)
Q Consensus       146 Gev~IpL~eL~-~~~~~e~W~~L  167 (558)
                      |.+.+++..+. .......|++|
T Consensus        80 g~~~~~l~~l~~~~~~~~~~~~l  102 (102)
T cd00030          80 GEVEIPLSELLDSGKEGELWLPL  102 (102)
T ss_pred             EEEEEeHHHhhhcCCcCcceecC
Confidence            99999999998 66667888875

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=99.32  E-value=1.3e-11  Score=102.37  Aligned_cols=94  Identities=39%  Similarity=0.614  Sum_probs=82.2

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~---k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      |.|.|++|++|......+..+|||++++...   ..+|+++.++.||.|||+|.|.+.... ...|.|+|||.+..+ +.
T Consensus         2 l~i~i~~~~~l~~~~~~~~~~~yv~v~~~~~~~~~~~T~~~~~~~~P~w~e~~~~~~~~~~-~~~l~i~v~~~~~~~~~~   80 (101)
T smart00239        2 LTVKIISARNLPKKDKKGKSDPYVKVSLDGDPKEKKKTKVVKNTLNPVWNETFEFEVPPPE-LAELEIEVYDKDRFGRDD   80 (101)
T ss_pred             eEEEEEEeeCCCCCCCCCCCCceEEEEEeCCccceEeeeEecCCCCCcccceEEEEecCcc-cCEEEEEEEecCCccCCc
Confidence            7899999999988776678999999999875   799999999999999999999998632 679999999999887 88


Q ss_pred             ccEEEEEecccccCCCcee
Q 008661          144 TLGDCTINISDLRDGQRHD  162 (558)
Q Consensus       144 fIGev~IpL~eL~~~~~~e  162 (558)
                      +||.+.++|.++..+....
T Consensus        81 ~~G~~~~~l~~~~~~~~~~   99 (101)
T smart00239       81 FIGQVTIPLSDLLLGGRHE   99 (101)
T ss_pred             eeEEEEEEHHHcccCcccc
Confidence            9999999999987765443

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=99.29  E-value=1.5e-11  Score=113.78  Aligned_cols=93  Identities=30%  Similarity=0.471  Sum_probs=78.8

Q ss_pred             EEEEEEEecCCCCCC--CCC--CCCcEEEEEeCC---eEEEeeeecCCCC--CccceEEEEeeccCC-------------
Q 008661           68 ARVEVVEASDMKPSD--LNG--LADPYVKGQLGP---YRFRTKTQRKTLS--PKWHEEFNIPISTWD-------------  125 (558)
Q Consensus        68 L~VtVieArdL~~~D--~~G--~sDPYVkV~Lgp---~k~KTkVikkTlN--PvWnEtF~F~V~~~e-------------  125 (558)
                      |+|.|.+|++++..+  ..|  .+||||++.|.+   .+++|.|+++++|  |.||+.|.|.+....             
T Consensus         2 LRViIw~~~~v~~~~~~~~g~~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~~~~~~~~~~~~~~~~~~~   81 (133)
T cd08374           2 LRVIVWNTRDVLNDDTNITGEKMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFPFDYLPAEKKIVVIKKEHF   81 (133)
T ss_pred             EEEEEEECcCCcccccccCCccccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEeeecCCccceeEEEeeccc
Confidence            899999999976544  356  499999999965   5789999999999  999999999876411             


Q ss_pred             ---------CCceEEEEEeecCCCC-CCccEEEEEecccccCCCc
Q 008661          126 ---------SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR  160 (558)
Q Consensus       126 ---------~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~  160 (558)
                               ....|.|+|||.|.++ |++||+++++|..+..+..
T Consensus        82 ~~~~~~e~~~~~~L~lqvwD~D~~s~dd~iG~~~l~l~~l~~~~~  126 (133)
T cd08374          82 WSLDETEYKIPPKLTLQVWDNDKFSPDDFLGSLELDLSILPRPAK  126 (133)
T ss_pred             cccCcceEecCcEEEEEEEECcccCCCCcceEEEEEhhhcccccc
Confidence                     2458999999999998 9999999999999876644

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04020 C2B_SLP_1-2-3-4 C2 domain second repeat present in Synaptotagmin-like proteins 1-4

Probab=99.21  E-value=1.4e-11  Score=116.83  Aligned_cols=91  Identities=11%  Similarity=0.054  Sum_probs=67.7

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc--ccc-ceE-Eec
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ--QET-GIW-VHQ  262 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~--~e~-Gv~-v~~  262 (558)
                      +.+||||++++..   .+....++||.++++++||+|| |.|.|.  +.+++....+.|+|||++..  ++. |-. +..
T Consensus        46 g~~DPYVkv~l~~---~~~~~~~~kT~vi~~t~nP~Wn-E~f~f~~~~~~~l~~~~L~i~V~d~d~~~~d~~lG~v~i~l  121 (162)
T cd04020          46 GTSDSFVKCYLLP---DKSKKSKQKTPVVKKSVNPVWN-HTFVYDGVSPEDLSQACLELTVWDHDKLSSNDFLGGVRLGL  121 (162)
T ss_pred             CCCCCEEEEEEEc---CCCCCcceeCCccCCCCCCCCC-CEEEEecCCHHHhCCCEEEEEEEeCCCCCCCceEEEEEEeC
Confidence            4589999999943   3445567899999999999999 999997  45567778899999998843  332 533 221


Q ss_pred             C--------------CccccccCccccCCCCCccc
Q 008661          263 P--------------GSEVAQTWEPRKGKNRRLDT  283 (558)
Q Consensus       263 p--------------gt~~~~hW~~~l~~~r~~~~  283 (558)
                      .              .++...||..|+.+|++++.
T Consensus       122 ~~~~~~~~~~~w~~~~~~~~~~w~~~~~~p~~~~~  156 (162)
T cd04020         122 GTGKSYGQAVDWMDSTGEEILLWQKMLDNPNSWVE  156 (162)
T ss_pred             CccccCCCccccccCChHHHHHHHHHHhCCCCeEE
Confidence            1              12335899999999998875

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involvin

>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]

Probab=99.15  E-value=9.6e-11  Score=135.74  Aligned_cols=108  Identities=35%  Similarity=0.550  Sum_probs=96.9

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV  141 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s  141 (558)
                      .+.|.|.|.+..|.||+..|.+|.+||||++.+... .++|+++++|+||+|||+|.++|.. .....|.|.|+|||...
T Consensus      1037 ~nsG~l~I~~~~~~nl~~~d~ng~sDpfv~~~ln~k~vyktkv~KktlNPvwNEe~~i~v~~-r~~D~~~i~v~Dwd~~~ 1115 (1227)
T COG5038        1037 ENSGYLTIMLRSGENLPSSDENGYSDPFVKLFLNEKSVYKTKVVKKTLNPVWNEEFTIEVLN-RVKDVLTINVNDWDSGE 1115 (1227)
T ss_pred             cccCcEEEEEeccCCCcccccCCCCCceEEEEecceecccccchhccCCCCccccceEeeec-cccceEEEEEeecccCC
Confidence            467999999999999999999999999999999774 8999999999999999999999985 24568999999999987


Q ss_pred             -CCccEEEEEecccccCCCceeeeeecCCCC
Q 008661          142 -DDTLGDCTINISDLRDGQRHDMWIPLQNIK  171 (558)
Q Consensus       142 -DDfIGev~IpL~eL~~~~~~e~W~~L~~k~  171 (558)
                       ++.||.+.++|..|..+.....-++|.++.
T Consensus      1116 knd~lg~~~idL~~l~~~~~~n~~i~ldgk~ 1146 (1227)
T COG5038        1116 KNDLLGTAEIDLSKLEPGGTTNSNIPLDGKT 1146 (1227)
T ss_pred             CccccccccccHhhcCcCCccceeeeccCcc
Confidence             999999999999999888777777777643

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=99.14  E-value=3.2e-11  Score=133.61  Aligned_cols=105  Identities=29%  Similarity=0.370  Sum_probs=93.9

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-------~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      |.+.....|......|.|.|+.|+++.+.|.+|.+||||.|.++|       ...+|+|+.+|+||+|+|+|.|.|+..+
T Consensus       934 g~lsvr~~y~~n~q~L~veVlhA~diipLD~NGlSDPFVviEl~P~~~fp~v~~q~T~V~~rtLnPVfDE~FeFsVp~e~ 1013 (1103)
T KOG1328|consen  934 GVLSVRAYYNGNAQTLVVEVLHAKDIIPLDSNGLSDPFVVIELIPKFRFPAVPVQKTKVVSRTLNPVFDETFEFSVPPEP 1013 (1103)
T ss_pred             CceEEEEEeeccccchhhhhhccccccccCCCCCCCCeEEEEeccccccccchhhhhhhhhccccchhhhheeeecCccc
Confidence            445667789999999999999999999999999999999999998       3469999999999999999999999643


Q ss_pred             -C--CceEEEEEeecCCCC-CCccEEEEEecccccC
Q 008661          126 -S--PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD  157 (558)
Q Consensus       126 -~--~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~  157 (558)
                       .  ...|.|+|+|+|-++ +||-|++.+.|.++..
T Consensus      1014 c~te~Am~~FTVMDHD~L~sNDFaGEA~L~Lg~vpG 1049 (1103)
T KOG1328|consen 1014 CSTETAMLHFTVMDHDYLRSNDFAGEAFLELGDVPG 1049 (1103)
T ss_pred             cccccceEEEEeeccceecccccchHHHHhhCCCCC
Confidence             2  347999999999998 9999999999998864

>PLN02270 phospholipase D alpha

Probab=99.09  E-value=8.1e-10  Score=126.04  Aligned_cols=120  Identities=18%  Similarity=0.346  Sum_probs=103.0

Q ss_pred             ceEEEEEEEEecCCCCCC------------------CCCCCCcEEEEEeCC-eEEEeeeecCC-CCCccceEEEEeeccC
Q 008661           65 VAYARVEVVEASDMKPSD------------------LNGLADPYVKGQLGP-YRFRTKTQRKT-LSPKWHEEFNIPISTW  124 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D------------------~~G~sDPYVkV~Lgp-~k~KTkVikkT-lNPvWnEtF~F~V~~~  124 (558)
                      .|.|.|+|++|++|+.++                  ..+++||||.|.++. ...+|+++.+. .||+|+|.|.+.+.. 
T Consensus         7 hg~l~~~i~ea~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~a~v~rtr~~~~~~~~p~w~e~f~i~~ah-   85 (808)
T PLN02270          7 HGTLHATIYEVDKLHSGGGPGFLGKLVANVEETVGVGKGESQLYATIDLEKARVGRTRKIENEPKNPRWYESFHIYCAH-   85 (808)
T ss_pred             ecceEEEEEEcccCCCcchhhHHHHHHhccchhccCCCCCCCceEEEEeCCcEEEEEeecCCCCCCCccccceEEeecc-
Confidence            589999999999998642                  125789999999987 56799999884 699999999999986 


Q ss_pred             CCCceEEEEEeecCCCCCCccEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEeccC
Q 008661          125 DSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESA  186 (558)
Q Consensus       125 e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~~~  186 (558)
                       ....+.|.|.|.|.++..+||.+.||+.+|..+...+.||++.+.      ....|+|++.|.+...
T Consensus        86 -~~~~v~f~vkd~~~~g~~~ig~~~~p~~~~~~g~~i~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~~  152 (808)
T PLN02270         86 -MASNIIFTVKDDNPIGATLIGRAYIPVEEILDGEEVDRWVEILDNDKNPIHGGSKIHVKLQYFEVTK  152 (808)
T ss_pred             -CcceEEEEEecCCccCceEEEEEEEEHHHhcCCCccccEEeccCCCCCcCCCCCEEEEEEEEEEccc
Confidence             357899999999999988999999999999999999999999652      2348999999998653

>cd04029 C2A_SLP-4_5 C2 domain first repeat present in Synaptotagmin-like proteins 4 and 5

Probab=99.07  E-value=2.2e-10  Score=103.92  Aligned_cols=77  Identities=9%  Similarity=0.110  Sum_probs=61.1

Q ss_pred             ceEEEEEEEEEeccCC-----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          172 IGRLHLAITVLEESAK-----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~-----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      .|+|+|+|.|.+..+.                 .+.+||||++++.+.   +.+..++||.++++++||+|| |.|.|. 
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyVkv~l~p~---~~~~~~~kT~v~~~t~nP~wn-E~f~f~i   76 (125)
T cd04029           1 SGEILFSLSYDYKTQSLNVHVKECRNLAYGDEAKKRSNPYVKTYLLPD---KSRQSKRKTSIKRNTTNPVYN-ETLKYSI   76 (125)
T ss_pred             CcEEEEEEEEECCCCeEEEEEEEecCCCccCCCCCCCCcEEEEEEEcC---CccccceEeeeeeCCCCCccc-ceEEEEC
Confidence            3777777777655433                 134899999999543   445677899999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccC
Q 008661          234 SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG  252 (558)
                      +.+++....+.|+|||++.
T Consensus        77 ~~~~l~~~~L~~~V~d~~~   95 (125)
T cd04029          77 SHSQLETRTLQLSVWHYDR   95 (125)
T ss_pred             CHHHhCCCEEEEEEEECCC
Confidence            6667888899999999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp4/granuphilin promotes dense-core vesicle exocytosis. The C2A domain of Slp4 is Ca2+ dependent. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2

>PLN02223 phosphoinositide phospholipase C

Probab=99.07  E-value=1e-09  Score=120.80  Aligned_cols=113  Identities=22%  Similarity=0.309  Sum_probs=87.7

Q ss_pred             ceEEEEEEEEecCCCCC-----CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEE
Q 008661           65 VAYARVEVVEASDMKPS-----DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEV  134 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~-----D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V  134 (558)
                      ...|.|+|+.|++|+..     +.....||||+|.+..     ..++|.+..++.||+|||+|.|.+...+ -..|+|+|
T Consensus       408 ~~~L~V~Visgq~~~~~~~k~~~~~s~~DpyV~VeI~Gvp~D~~~~kT~v~nNg~nPvWne~F~F~i~~PE-LAlLrf~V  486 (537)
T PLN02223        408 VKILKVKIYMGDGWIVDFKKRIGRLSKPDLYVRISIAGVPHDEKIMKTTVKNNEWKPTWGEEFTFPLTYPD-LALISFEV  486 (537)
T ss_pred             ceEEEEEEEEcccccCCcccccCCCCCCCeEEEEEEeeccCCcceeEEEeCCCCcCceecceeEEEEEccC-ceEEEEEE
Confidence            46799999999998521     2235689999999943     4568888889999999999999998533 44799999


Q ss_pred             eecCCCC-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661          135 RDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV  181 (558)
Q Consensus       135 ~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y  181 (558)
                      ||+|... ++|||++.+|+..|..|.+   +++|.+.     ..-.|.+++.|
T Consensus       487 ~D~D~~~~ddfiGQ~~LPv~~Lr~GyR---~VpL~~~~g~~l~~~~Ll~~f~~  536 (537)
T PLN02223        487 YDYEVSTADAFCGQTCLPVSELIEGIR---AVPLYDERGKACSSTMLLTRFKW  536 (537)
T ss_pred             EecCCCCCCcEEEEEecchHHhcCCce---eEeccCCCcCCCCCceEEEEEEe
Confidence            9999877 8999999999999998864   4566542     22356666554

>cd08393 C2A_SLP-1_2 C2 domain first repeat present in Synaptotagmin-like proteins 1 and 2

Probab=99.04  E-value=3.5e-10  Score=102.33  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=61.3

Q ss_pred             ceEEEEEEEEEeccCC----------------C-CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          172 IGRLHLAITVLEESAK----------------Q-GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l-~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      +|+|+|+|.|.+...+                . +.+||||++++.+.   ..+..++||.++++++||+|| |.|.|. 
T Consensus         1 ~G~i~~sl~y~~~~~~L~V~vi~a~~L~~~d~~~g~~dpyVkv~l~p~---~~~~~~~kT~v~~~t~nP~~n-E~f~f~v   76 (125)
T cd08393           1 QGSVQFALDYDPKLRELHVHVIQCQDLAAADPKKQRSDPYVKTYLLPD---KSNRGKRKTSVKKKTLNPVFN-ETLRYKV   76 (125)
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEeCCCCCcCCCCCCCCcEEEEEEEcC---CCccccccCccCcCCCCCccC-ceEEEEC
Confidence            4777777777766422                2 45899999999543   344567899999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccC
Q 008661          234 SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG  252 (558)
                      +.+++....+.++|||++.
T Consensus        77 ~~~~l~~~~L~~~V~d~~~   95 (125)
T cd08393          77 EREELPTRVLNLSVWHRDS   95 (125)
T ss_pred             CHHHhCCCEEEEEEEeCCC
Confidence            6667888899999999984

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike Slp3 and Slp4/granuphilin which are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety

>cd08392 C2A_SLP-3 C2 domain first repeat present in Synaptotagmin-like protein 3

Probab=99.02  E-value=4.9e-10  Score=102.37  Aligned_cols=78  Identities=9%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             ceEEEEEEEEEeccCC-----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          172 IGRLHLAITVLEESAK-----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~-----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      +|+|+|+|+|.+....                 .+..|||||+++.+.   .....++||.++++++||+|| |.|.|. 
T Consensus         1 ~G~i~~sl~Y~~~~~~L~V~V~~a~nL~~~d~~~g~~dpYVkv~llp~---~~~~~k~kT~v~~~t~nPvfN-E~F~f~v   76 (128)
T cd08392           1 TGEIEFALHYNFRTSCLEITIKACRNLAYGDEKKKKCHPYVKVCLLPD---KSHNSKRKTAVKKGTVNPVFN-ETLKYVV   76 (128)
T ss_pred             CcEEEEEEEEeCCCCEEEEEEEecCCCCccCCCCCCCCeEEEEEEEeC---CcccceeecccccCCCCCccc-eEEEEEc
Confidence            3777777777665433                 144799999999544   344567899999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccCc
Q 008661          234 SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+++....+.++|||++..
T Consensus        77 ~~~~l~~~~L~v~V~~~~~~   96 (128)
T cd08392          77 EADLLSSRQLQVSVWHSRTL   96 (128)
T ss_pred             CHHHhCCcEEEEEEEeCCCC
Confidence            77788889999999999843

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. SHD of Slp (except for the Slp4-SHD) function as a specific Rab27A/B-binding domain. In addition to Slp, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. Little is known about the expression or localization of Slp3. The C2A domain of Slp3 is Ca2+ dependent. It has been demonstrated that Slp3 promotes dense-core vesicle exocytosis. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids

>cd08680 C2_Kibra C2 domain found in Human protein Kibra

Probab=98.99  E-value=7.5e-10  Score=100.93  Aligned_cols=61  Identities=10%  Similarity=-0.075  Sum_probs=52.4

Q ss_pred             CCCCCcceEEecccCCCCce-eeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKE-DQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~kr-lkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+|||||++|.+.   .++ ..++||.++++++||+|| |.|.|. +.+++...++.++||++++.
T Consensus        33 ~~~dpyVKv~Llp~---~~~~~~~~kT~v~~~t~nPvfn-E~F~f~v~~~~L~~~~L~~~V~~~~~~   95 (124)
T cd08680          33 ENSKVYVRVALLPC---SSSTSCLFRTKALEDQDKPVFN-EVFRVPISSTKLYQKTLQVDVCSVGPD   95 (124)
T ss_pred             CCCCeEEEEEEccC---CCCCCceEEcCccCCCCCCccc-cEEEEECCHHHhhcCEEEEEEEeCCCC
Confidence            34899999999544   433 357899999999999999 999999 89999999999999999843

Kibra is thought to be a regulator of the Salvador (Sav)/Warts (Wts)/Hippo (Hpo) (SWH) signaling network, which limits tissue growth by inhibiting cell proliferation and promoting apoptosis. The core of the pathway consists of a MST and LATS family kinase cascade that ultimately phosphorylates and inactivates the YAP/Yorkie (Yki) transcription coactivator. The FERM domain proteins Merlin (Mer) and Expanded (Ex) are part of the upstream regulation controlling pathway mechanism. Kibra colocalizes and associates with Mer and Ex and is thought to transduce an extracellular signal via the SWH network. The apical scaffold machinery that contains Hpo, Wts, and Ex recruits Yki to the apical membrane facilitating its inhibitory phosphorlyation by Wts. Since Kibra associates with Ex and is apically located it is hypothesized that KIBRA is part of the scaffold, helps in the Hpo/Wts complex, and helps recruit Yki for inactivation that prom

>PLN02952 phosphoinositide phospholipase C

Probab=98.99  E-value=3.6e-09  Score=118.44  Aligned_cols=101  Identities=30%  Similarity=0.412  Sum_probs=83.2

Q ss_pred             ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661           65 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE  133 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~------D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~  133 (558)
                      ...|.|+|+.|.+|+..      +.....||||+|.+..     .+.+|+++.++.||+|||+|.|.+...+ -..|+|.
T Consensus       469 ~~~L~V~VisGq~l~lp~~~~~~~~~~~~D~yV~V~i~G~p~D~~~~kTkvi~nN~nPvWnE~F~F~i~~PE-LAllrf~  547 (599)
T PLN02952        469 KKTLKVKVYLGDGWRLDFSHTHFDSYSPPDFYTKMYIVGVPADNAKKKTKIIEDNWYPAWNEEFSFPLTVPE-LALLRIE  547 (599)
T ss_pred             cceEEEEEEECcccCCCCccccCCccCCCCceEEEEEeccCCCCcceeeeeccCCCCcccCCeeEEEEEcCC-ccEEEEE
Confidence            46799999999988531      1123469999999843     5679999999999999999999988533 3479999


Q ss_pred             EeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      |||+|..+ ++|+|++.+||..|..|.+   |++|.+
T Consensus       548 V~D~D~~~~ddfiGq~~lPv~~Lr~GyR---~VpL~~  581 (599)
T PLN02952        548 VREYDMSEKDDFGGQTCLPVSELRPGIR---SVPLHD  581 (599)
T ss_pred             EEecCCCCCCCeEEEEEcchhHhcCCce---eEeCcC
Confidence            99999987 9999999999999998864   888874

>KOG1328 consensus Synaptic vesicle protein BAIAP3, involved in vesicle priming/regulation [Intracellular trafficking, secretion, and vesicular transport; Signal transduction mechanisms]

Probab=98.98  E-value=1.2e-10  Score=129.19  Aligned_cols=123  Identities=26%  Similarity=0.477  Sum_probs=102.2

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-------------------------------EEEeeeecCCCCC
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-------------------------------RFRTKTQRKTLSP  111 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-------------------------------k~KTkVikkTlNP  111 (558)
                      +|..-|.|.+.+|++|.++|.+|.+|||+++.+.+.                               ..-|.|+++|+||
T Consensus       111 ~P~~~l~is~~~ak~l~akd~ngfSdP~~m~g~~p~~~~~~~pra~~eqrdgl~~~~~~~GpiPAKlIkatsvk~~TLnP  190 (1103)
T KOG1328|consen  111 PPSVLLNISLLEAKDLIAKDVNGFSDPFAMMGVVPGTRKENSPRALHEQRDGLMHRFQDTGPIPAKLIKATSVKKKTLNP  190 (1103)
T ss_pred             CCcHHHHHHHHHhcCccccCCCCCCChhhhhccccccccccChhhhhhhhhhhhhccccCCCCcHHHhhhcccccccCCc
Confidence            355567889999999999999999999999988540                               1247899999999


Q ss_pred             ccceEEEEeeccCCCCceEEEEEeecCC---------------------------------CC----CCccEEEEEeccc
Q 008661          112 KWHEEFNIPISTWDSPNVLVIEVRDKDH---------------------------------FV----DDTLGDCTINISD  154 (558)
Q Consensus       112 vWnEtF~F~V~~~e~~~tL~V~V~D~D~---------------------------------~s----DDfIGev~IpL~e  154 (558)
                      +|+|.|.|.|.+. ...++++-+||+|-                                 .+    |||||++.|||.+
T Consensus       191 kW~EkF~F~IeDv-~tDqfHlDIWDHDDe~sv~dAvs~LNeV~G~kG~GRyFKqv~qSARans~d~tDDFLGciNipl~E  269 (1103)
T KOG1328|consen  191 KWSEKFQFTIEDV-QTDQFHLDIWDHDDEESVLDAVSSLNEVTGFKGIGRYFKQVTQSARANSDDCTDDFLGCINIPLAE  269 (1103)
T ss_pred             chhhheeeehhcc-ccceeeeecccCCccHHHHHHHHHHhhhhcchhHHHHHHHHHHHHhcCCCccccccccccccchhc
Confidence            9999999999863 46689999999871                                 11    7899999999999


Q ss_pred             ccCCCceeeeeecCCC-----CceEEEEEEEEEeccCC
Q 008661          155 LRDGQRHDMWIPLQNI-----KIGRLHLAITVLEESAK  187 (558)
Q Consensus       155 L~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~~~~  187 (558)
                      +... ..++||.|+++     ..|.++|.|++......
T Consensus       270 iP~~-Gld~WFkLepRS~~S~VqG~~~LklwLsT~e~~  306 (1103)
T KOG1328|consen  270 IPPD-GLDQWFKLEPRSDKSKVQGQVKLKLWLSTKEEG  306 (1103)
T ss_pred             CCcc-hHHHHhccCcccccccccceEEEEEEEeeeccc
Confidence            9865 58999999874     46999999999876543

>cd08381 C2B_PI3K_class_II C2 domain second repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=98.96  E-value=9.6e-10  Score=99.29  Aligned_cols=61  Identities=10%  Similarity=-0.001  Sum_probs=51.5

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+|||||+++.+.   ..+..++||.++++++||+|| |.|.|.  +.+.+....+.++|||++..
T Consensus        31 ~~~DpyVkv~l~~~---~~~~~~~kT~v~~~~~nP~wn-E~F~f~~~~~~~l~~~~L~~~V~d~d~~   93 (122)
T cd08381          31 SDPDPYVKTYLLPD---PQKTTKRKTKVVRKTRNPTFN-EMLVYDGLPVEDLQQRVLQVSVWSHDSL   93 (122)
T ss_pred             CCCCCEEEEEEeeC---CccCCceeCCccCCCCCCCcc-cEEEEecCChHHhCCCEEEEEEEeCCCC
Confidence            45899999999543   345578899999999999999 999998  56778889999999999854

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permut

>cd04028 C2B_RIM1alpha C2 domain second repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=98.94  E-value=5.7e-09  Score=97.95  Aligned_cols=59  Identities=12%  Similarity=-0.053  Sum_probs=48.8

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE-eccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~-D~dG~  253 (558)
                      +.+|||||++|.+   .+++..|+||.++++|+||+|| |.|.|...  +....+.++|| |++..
T Consensus        49 g~sDPYVKv~Llp---~~~~~~k~KT~v~kktlnPvfN-E~F~f~v~--l~~~~L~v~V~~d~~~~  108 (146)
T cd04028          49 VLPAPYVKVYLLE---GKKCIAKKKTKIARKTLDPLYQ-QQLVFDVS--PTGKTLQVIVWGDYGRM  108 (146)
T ss_pred             CCcCCeEEEEEEC---CCccccceeceecCCCCCCccC-CeEEEEEc--CCCCEEEEEEEeCCCCC
Confidence            3589999999944   3555678999999999999999 99999933  67889999999 56643

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>PLN02230 phosphoinositide phospholipase C 4

Probab=98.92  E-value=6.9e-09  Score=116.10  Aligned_cols=113  Identities=26%  Similarity=0.362  Sum_probs=87.6

Q ss_pred             ceEEEEEEEEecCCCCC------CCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661           65 VAYARVEVVEASDMKPS------DLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE  133 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~------D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~  133 (558)
                      ..+|.|+|+.|.+++..      +.....||||+|.+-.     .+.+|++..++.||+|||+|.|.+...+ -..|+|.
T Consensus       468 ~~~L~V~VisGq~~~l~~~k~~~~~~s~~DpyV~Vei~Gvp~D~~~~kT~v~~n~~nP~Wneef~F~l~vPE-LAllRf~  546 (598)
T PLN02230        468 KKTLKVKVCMGDGWLLDFKKTHFDSYSPPDFFVRVGIAGAPVDEVMEKTKIEYDTWTPIWNKEFIFPLAVPE-LALLRVE  546 (598)
T ss_pred             CcEEEEEEEEccCccCCCccccCCCCCCCCceEEEEEEECCCCCcccceeccCCCCCCccCCeeEEEEEcCc-eeEEEEE
Confidence            46899999999987521      2234579999999932     4578999999999999999999988533 4589999


Q ss_pred             EeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCC-----ceEEEEEEEE
Q 008661          134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITV  181 (558)
Q Consensus       134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~-----~GeL~LsL~y  181 (558)
                      |||+|... ++|||+..+|+..|..|.++   ++|.+..     .-.|.+++.+
T Consensus       547 V~d~d~~~~ddfiGQ~~lPv~~Lr~GyR~---V~L~~~~G~~l~~~~Ll~~f~~  597 (598)
T PLN02230        547 VHEHDINEKDDFGGQTCLPVSEIRQGIHA---VPLFNRKGVKYSSTRLLMRFEF  597 (598)
T ss_pred             EEECCCCCCCCEEEEEEcchHHhhCccce---EeccCCCcCCCCCCeeEEEEEe
Confidence            99999876 99999999999999988663   5665421     2356666554

>cd08388 C2A_Synaptotagmin-4-11 C2A domain first repeat present in Synaptotagmins 4 and 11

Probab=98.89  E-value=3.5e-09  Score=96.40  Aligned_cols=76  Identities=17%  Similarity=0.246  Sum_probs=57.9

Q ss_pred             ceEEEEEEEEEeccCC----------------C-CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          172 IGRLHLAITVLEESAK----------------Q-GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l-~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      +|+|.|+|.|.+....                . +.+||||++++.+.     +.+++||.++++++||+|| |.|.|. 
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~a~~L~~~~~~~~~~DpyV~v~l~~~-----~~~~~kT~v~~~t~nP~wn-E~F~f~~   75 (128)
T cd08388           2 LGTLFFSLRYNSEKKALLVNIIECRDLPAMDEQSGTSDPYVKLQLLPE-----KEHKVKTRVLRKTRNPVYD-ETFTFYG   75 (128)
T ss_pred             CeEEEEEEEEECCCCEEEEEEEEeECCCCCCCCCCCcCCEEEEEEeCC-----cCceeeccEEcCCCCCcee-eEEEEcc
Confidence            5777777777665432                2 44799999999432     2345789999999999999 999994 


Q ss_pred             -CCCCCCCCceEEEEEeccCc
Q 008661          234 -SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 -p~e~l~~v~leveV~D~dG~  253 (558)
                       +.+++....+.++|||++..
T Consensus        76 ~~~~~~~~~~L~~~V~d~d~~   96 (128)
T cd08388          76 IPYNQLQDLSLHFAVLSFDRY   96 (128)
T ss_pred             cCHHHhCCCEEEEEEEEcCCC
Confidence             55677778899999998843

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmins 4 and 11, class 4 synaptotagmins, are located in the brain. Their functions are unknown. They are distinguished from the other synaptotagmins by having and Asp to Ser substitution in their C2A domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=98.87  E-value=2e-09  Score=124.39  Aligned_cols=116  Identities=21%  Similarity=0.196  Sum_probs=99.4

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      +|...+++.|.  .++|.|-|..|++|+-..-+..+||||+.||.|     .+.||+++++|.||.|||.+.+.-.+-+ 
T Consensus      1512 ggqV~LsIsY~--~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlPdp~k~sKRKTKvvrkt~~PTfnE~LvY~g~p~~~ 1589 (1639)
T KOG0905|consen 1512 GGQVKLSISYN--NGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLPDPRKTSKRKTKVVRKTRNPTFNEMLVYDGFPKEI 1589 (1639)
T ss_pred             CceEEEEEEEc--CceEEEEhhhhcccccccCCCCCCcceeEEecCCchHhhhhhhccccccCCCchhhheeecCCchhh
Confidence            45677888887  899999999999997666677899999999987     4679999999999999999988733222 


Q ss_pred             -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                       .++.|.++||..+.+. +.|+|.+.|+|.++...+....||.|..
T Consensus      1590 l~qReLQ~sVls~~~~~en~~lg~v~i~L~~~~l~kE~~~Wy~lg~ 1635 (1639)
T KOG0905|consen 1590 LQQRELQVSVLSNGGLLENVFLGGVNIPLLKVDLLKESVGWYNLGA 1635 (1639)
T ss_pred             hhhheeeeeeecccceeeeeeeeeeecchhhcchhhhhcceeeccc
Confidence             3578999999999888 8999999999999988877779999974

>PLN02222 phosphoinositide phospholipase C 2

Probab=98.87  E-value=1.7e-08  Score=112.87  Aligned_cols=113  Identities=24%  Similarity=0.321  Sum_probs=86.9

Q ss_pred             ceEEEEEEEEecCCC----C--CCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEE
Q 008661           65 VAYARVEVVEASDMK----P--SDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIE  133 (558)
Q Consensus        65 ~G~L~VtVieArdL~----~--~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~  133 (558)
                      ...|.|+|+.|.+++    .  .+.....||||+|.+..     .+.+|+++.++.||+|||+|.|.+...+ -..|+|.
T Consensus       451 ~~~L~V~Visgq~~~l~~~~~~~~~~~~~dpyV~Vei~G~p~D~~~~rTk~v~nn~nP~W~e~f~F~i~~Pe-LAllRf~  529 (581)
T PLN02222        451 KTTLRVTIYMGEGWYFDFRHTHFDQYSPPDFYTRVGIAGVPGDTVMKKTKTLEDNWIPAWDEVFEFPLTVPE-LALLRLE  529 (581)
T ss_pred             cceEEEEEEEcccccCCCCccccCCCCCCCeeEEEEEeccCCCcceeeeEecCCCCCcccCCeeEEEEEcCc-eeEEEEE
Confidence            357999999998853    1  11234579999999942     5679999999999999999999987533 4589999


Q ss_pred             EeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEE
Q 008661          134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITV  181 (558)
Q Consensus       134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y  181 (558)
                      |||+|... ++|||++.+|+..|..|.++   ++|.+.     ..-.|.+++.+
T Consensus       530 V~d~D~~~~ddfigq~~lPv~~Lr~GyR~---V~L~~~~g~~l~~a~Lfv~~~~  580 (581)
T PLN02222        530 VHEYDMSEKDDFGGQTCLPVWELSQGIRA---FPLHSRKGEKYKSVKLLVKVEF  580 (581)
T ss_pred             EEECCCCCCCcEEEEEEcchhhhhCccce---EEccCCCcCCCCCeeEEEEEEe
Confidence            99999876 99999999999999988663   556442     12356666554

>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]

Probab=98.87  E-value=8.8e-09  Score=115.93  Aligned_cols=115  Identities=24%  Similarity=0.432  Sum_probs=88.7

Q ss_pred             EEEEEEEEecCCCCCC----CCCCCCcEEEEEeCC-----eEEEee-eecCCCCCccceEEEEeeccCCCCceEEEEEee
Q 008661           67 YARVEVVEASDMKPSD----LNGLADPYVKGQLGP-----YRFRTK-TQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD  136 (558)
Q Consensus        67 ~L~VtVieArdL~~~D----~~G~sDPYVkV~Lgp-----~k~KTk-VikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D  136 (558)
                      +|.|.|+.|.++++.-    .+..+||||.|.+..     ...+|+ |..++.||.|+|+|.|.+...+ -..|+|.|+|
T Consensus       617 tL~IkI~sGq~~~~~~~~~~~~~~~dP~v~VeI~Gvp~D~~~~~Tk~v~~NgfnP~W~e~f~F~l~vPE-LAliRF~V~d  695 (746)
T KOG0169|consen  617 TLKIKIISGQGWLPDFGKTKFGEISDPDVYVEIAGVPADCAEQKTKVVKNNGFNPIWDEEFEFQLSVPE-LALIRFEVHD  695 (746)
T ss_pred             eeEEEEEecCcccCCCCCCcccccCCCCEEEEEcccccchhhhhceeeccCCcCcccCCeEEEEEeccc-eeEEEEEEEe
Confidence            7999999999776533    235689999999844     467899 5669999999999999998644 3489999999


Q ss_pred             cCCCC-CCccEEEEEecccccCCCceeeeeecCCC--CceEEEEEEEEE
Q 008661          137 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAITVL  182 (558)
Q Consensus       137 ~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k--~~GeL~LsL~y~  182 (558)
                      +|..+ |||+|+..+|+..|..|.++-.-+..++.  ..-+|.+.+.+.
T Consensus       696 ~d~~~~ddF~GQ~tlP~~~L~~GyRhVpL~~~~G~~~~~asLfv~i~~~  744 (746)
T KOG0169|consen  696 YDYIGKDDFIGQTTLPVSELRQGYRHVPLLSREGEALSSASLFVRIAIV  744 (746)
T ss_pred             cCCCCcccccceeeccHHHhhCceeeeeecCCCCccccceeEEEEEEEe
Confidence            99998 99999999999999988776333332221  234566666654

>cd08385 C2A_Synaptotagmin-1-5-6-9-10 C2A domain first repeat present in Synaptotagmins 1, 5, 6, 9, and 10

Probab=98.86  E-value=3.2e-09  Score=95.02  Aligned_cols=76  Identities=12%  Similarity=0.152  Sum_probs=57.4

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      .|+|.|+|.|.+..+.                .+.+||||++++.+.     ..+++||.++++++||+|| |.|.|. +
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~~~~dpyv~v~l~~~-----~~~~~kT~v~~~t~nP~wn-e~f~f~i~   75 (124)
T cd08385           2 LGKLQFSLDYDFQSNQLTVGIIQAADLPAMDMGGTSDPYVKVYLLPD-----KKKKFETKVHRKTLNPVFN-ETFTFKVP   75 (124)
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEeeCCCCccCCCCCCCEEEEEEEcC-----CCCceecccCcCCCCCcee-eeEEEeCC
Confidence            4667777766554332                234799999999433     1246799999999999999 999999 5


Q ss_pred             CCCCCCCceEEEEEeccCc
Q 008661          235 SEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG~  253 (558)
                      ..++....+.|+|||++..
T Consensus        76 ~~~l~~~~l~~~V~d~d~~   94 (124)
T cd08385          76 YSELGNKTLVFSVYDFDRF   94 (124)
T ss_pred             HHHhCCCEEEEEEEeCCCC
Confidence            5566678899999999843

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 1, a member of class 1 synaptotagmins, is located in the brain and endocranium and localized to the synaptic vesicles and secretory granules. It functions as a Ca2+ sensor for fast exocytosis as do synaptotagmins 5, 6, and 10. It is distinguished from the other synaptotagmins by having an N-glycosylated N-terminus. Synaptotagmins 5, 6, and 10, members of class 3 synaptotagmins, are located primarily in the brain and localized to the active zone and plasma membrane. They is distinguished from the other synaptotagmins by having disulfide bonds at its N-terminus. Synaptotagmin 6 also regulates the acrosome reaction, a unique Ca2+-regulated exocytosis, in sperm. Synaptotagmin 9, a class 5 synaptotagmins, is located in the brain and

>cd04031 C2A_RIM1alpha C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins

Probab=98.85  E-value=5.4e-09  Score=93.22  Aligned_cols=61  Identities=10%  Similarity=0.067  Sum_probs=48.9

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+||||++++...   +....++||.++++++||+|| |.|.|.  +.+++....+.++|||++..
T Consensus        35 ~~~dpyv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~~~~~~~l~~~~l~~~V~d~~~~   97 (125)
T cd04031          35 SLRNPYVKVYLLPD---RSEKSKRRTKTVKKTLNPEWN-QTFEYSNVRRETLKERTLEVTVWDYDRD   97 (125)
T ss_pred             CCCCCEEEEEEccC---CCccccccccccCCCCCCccc-cEEEEcccCHHHhCCCEEEEEEEeCCCC
Confidence            34899999999432   334567899999999999999 999997  33566778999999999853

RIMs are believed to organize specialized sites of the plasma membrane called active zones. They also play a role in controlling neurotransmitter release, plasticity processes, as well as memory and learning. RIM contains an N-terminal zinc finger domain, a PDZ domain, and two C-terminal C2 domains (C2A, C2B). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=98.84  E-value=7.8e-09  Score=112.68  Aligned_cols=115  Identities=23%  Similarity=0.432  Sum_probs=98.0

Q ss_pred             eEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCCeEEEeeeecCCCCCccc-eEEEEeeccCC-CCceEEEEEeecCCCC-
Q 008661           66 AYARVEVVEASDMKPSDL-NGLADPYVKGQLGPYRFRTKTQRKTLSPKWH-EEFNIPISTWD-SPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~-~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWn-EtF~F~V~~~e-~~~tL~V~V~D~D~~s-  141 (558)
                      |.|-|.|..|++||.||. ....|.||.+.+++..++|.|..+++||.|| +.|.|.|.+.+ ....|+|.++|+|..+ 
T Consensus         3 gkl~vki~a~r~lpvmdkasd~tdafveik~~n~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dtysa   82 (1169)
T KOG1031|consen    3 GKLGVKIKAARHLPVMDKASDLTDAFVEIKFANTTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDTYSA   82 (1169)
T ss_pred             CcceeEEEeccCCcccccccccchheeEEEecccceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEeccccccc
Confidence            678999999999999996 4678999999999999999999999999999 56999998655 3458999999999999 


Q ss_pred             CCccEEEEEecccccCC----------CceeeeeecCCC---CceEEEEEEE
Q 008661          142 DDTLGDCTINISDLRDG----------QRHDMWIPLQNI---KIGRLHLAIT  180 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~----------~~~e~W~~L~~k---~~GeL~LsL~  180 (558)
                      +|-||.+.|+++.|...          .....||++.+.   -+|+|.+-+.
T Consensus        83 ndaigkv~i~idpl~~e~aaqavhgkgtvisgw~pifdtihgirgeinvivk  134 (1169)
T KOG1031|consen   83 NDAIGKVNIDIDPLCLEEAAQAVHGKGTVISGWFPIFDTIHGIRGEINVIVK  134 (1169)
T ss_pred             ccccceeeeccChHHHHhHHhhhcCCceEEeeeeecceecccccceeEEEEE
Confidence            99999999999988543          235689999763   4688776555

>PLN02228 Phosphoinositide phospholipase C

Probab=98.83  E-value=2.1e-08  Score=111.77  Aligned_cols=115  Identities=21%  Similarity=0.317  Sum_probs=89.4

Q ss_pred             eEEEEEEEEecCCCC---CC---CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCcc-ceEEEEeeccCCCCceEEEE
Q 008661           66 AYARVEVVEASDMKP---SD---LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKW-HEEFNIPISTWDSPNVLVIE  133 (558)
Q Consensus        66 G~L~VtVieArdL~~---~D---~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvW-nEtF~F~V~~~e~~~tL~V~  133 (558)
                      ..|+|+|+.|++|+.   .+   .....||||+|.+..     .+++|+++.++.||+| ||+|.|.+...+ -..|+|.
T Consensus       431 ~~L~I~ViSGq~l~lp~~~~~~~~~~~~DpyV~Vei~G~p~D~~~~rTk~~~n~~nP~W~~e~f~F~~~~pE-LA~lRf~  509 (567)
T PLN02228        431 TTLKVKIYTGEGWDLDFHLTHFDQYSPPDFFVKIGIAGVPRDTVSYRTETAVDQWFPIWGNDEFLFQLRVPE-LALLWFK  509 (567)
T ss_pred             ceEEEEEEECCccCCCCCCCCCCCCCCCCcEEEEEEEecCCCCCcceeeccCCCCCceECCCeEEEEEEcCc-eeEEEEE
Confidence            479999999998731   11   223489999999833     4679999999999999 999999988533 4489999


Q ss_pred             EeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEEec
Q 008661          134 VRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE  184 (558)
Q Consensus       134 V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~  184 (558)
                      |+|+|..+ ++|||++.|||..|..|.++   ++|.+.     ...+|.+++.+.+.
T Consensus       510 V~D~d~~~~d~figq~~lPv~~Lr~GYR~---VpL~~~~G~~l~~atLfv~~~~~~~  563 (567)
T PLN02228        510 VQDYDNDTQNDFAGQTCLPLPELKSGVRA---VRLHDRAGKAYKNTRLLVSFALDPP  563 (567)
T ss_pred             EEeCCCCCCCCEEEEEEcchhHhhCCeeE---EEccCCCCCCCCCeEEEEEEEEcCc
Confidence            99999876 99999999999999887664   455442     23567777777553

>cd04030 C2C_KIAA1228 C2 domain third repeat present in uncharacterized human KIAA1228-like proteins

Probab=98.82  E-value=6.5e-09  Score=93.10  Aligned_cols=77  Identities=18%  Similarity=0.224  Sum_probs=60.0

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      .|+|.|+|.|.+..+.                .+.+||||++++...   +....++||.++++++||+|| |.|.|. .
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~vi~a~~L~~~~~~~~~dpyv~v~l~~~---~~~~~~~kT~v~~~~~nP~wn-e~f~f~i~   77 (127)
T cd04030           2 LGRIQLTIRYSSQRQKLIVTVHKCRNLPPCDSSDIPDPYVRLYLLPD---KSKSTRRKTSVKKDNLNPVFD-ETFEFPVS   77 (127)
T ss_pred             CeEEEEEEEEeCCCCEEEEEEEEEECCCCccCCCCCCceEEEEEEcC---CCCCceEecccccCCCCCEEC-eEEEEecC
Confidence            4666777766664432                234899999999443   345678899999999999999 999999 6


Q ss_pred             CCCCCCCceEEEEEeccC
Q 008661          235 SEKSPKVADNFEPINIEG  252 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG  252 (558)
                      ..++....+.++|||.+.
T Consensus        78 ~~~l~~~~l~i~v~~~~~   95 (127)
T cd04030          78 LEELKRRTLDVAVKNSKS   95 (127)
T ss_pred             HHHhcCCEEEEEEEECCc
Confidence            667777899999999874

KIAA proteins are uncharacterized human proteins. They were compiled by the Kazusa mammalian cDNA project which identified more than 2000 human genes. They are identified by 4 digit codes that precede the KIAA designation. Many KIAA genes are still functionally uncharacterized including KIAA1228. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1

>KOG2059 consensus Ras GTPase-activating protein [Signal transduction mechanisms]

Probab=98.80  E-value=7.2e-09  Score=115.37  Aligned_cols=147  Identities=20%  Similarity=0.265  Sum_probs=110.1

Q ss_pred             cCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCc
Q 008661           37 EPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPK  112 (558)
Q Consensus        37 ~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp----~k~KTkVikkTlNPv  112 (558)
                      |-+.-.+|-...+++.-.+...+.-..+...+.+.+++++++.+.+ ++.+||||.+.+..    ...+|+++++|.+|.
T Consensus       102 W~~L~~VD~dsEVQG~v~l~l~~~e~~~~~~~~c~~L~~r~~~P~~-~~~~dp~~~v~~~g~~~~~~~~T~~~kkt~~p~  180 (800)
T KOG2059|consen  102 WFSLQPVDPDSEVQGKVHLELALTEAIQSSGLVCHVLKTRQGLPII-NGQCDPFARVTLCGPSKLKEKKTKVKKKTTNPQ  180 (800)
T ss_pred             ceeccccCCChhhceeEEEEEEeccccCCCcchhhhhhhcccCcee-CCCCCcceEEeecccchhhccccceeeeccCcc
Confidence            3344445555556555444444444455566778888888887776 55699999999854    346999999999999


Q ss_pred             cceEEEEeeccCC--------------CCceEEEEEee-cCCCC-CCccEEEEEecccccCCCceeeeeecCCC------
Q 008661          113 WHEEFNIPISTWD--------------SPNVLVIEVRD-KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------  170 (558)
Q Consensus       113 WnEtF~F~V~~~e--------------~~~tL~V~V~D-~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k------  170 (558)
                      |+|.|.|.+....              ....|++++|+ ++... ++|+|++.+++..+........||.|++.      
T Consensus       181 ~~Ev~~f~~~~~~~~s~ks~~~~~~e~~~l~irv~lW~~~~~~~~~~FlGevrv~v~~~~~~s~p~~W~~Lqp~~~g~~~  260 (800)
T KOG2059|consen  181 FDEVFYFEVTREESYSKKSLFMPEEEDDMLEIRVDLWNDLNLVINDVFLGEVRVPVDVLRQKSSPAAWYYLQPRPNGEKS  260 (800)
T ss_pred             hhhheeeeeccccccccchhcCcccCCceeeEEEeeccchhhhhhhhhceeEEeehhhhhhccCccceEEEecCCCcccC
Confidence            9999999987530              12368999998 45554 99999999999999877778999999863      


Q ss_pred             ----CceEEEEEEEEEec
Q 008661          171 ----KIGRLHLAITVLEE  184 (558)
Q Consensus       171 ----~~GeL~LsL~y~p~  184 (558)
                          ..|.+++.++|...
T Consensus       261 ~~~~~lGslrl~v~y~~D  278 (800)
T KOG2059|consen  261 SDGGDLGSLRLNVTYTED  278 (800)
T ss_pred             CCCCCccceeeeEEeeec
Confidence                34889999998764

>cd08387 C2A_Synaptotagmin-8 C2A domain first repeat present in Synaptotagmin 8

Probab=98.79  E-value=8.5e-09  Score=92.36  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=57.9

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      +|+|+++|.|.+..+.                .+.+|||+++++.+.   +  .+++||.++++++||+|| |.|.|. +
T Consensus         2 ~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~--~~~~kT~v~~~t~~P~wn-e~f~f~v~   75 (124)
T cd08387           2 RGELHFSLEYDKDMGILNVKLIQARNLQPRDFSGTADPYCKVRLLPD---R--SNTKQSKIHKKTLNPEFD-ESFVFEVP   75 (124)
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEeeCCCCCCCCCCCCCeEEEEEecC---C--CCcEeCceEcCCCCCCcc-cEEEEeCC
Confidence            4666666666654432                234899999999432   1  245799999999999999 999999 6


Q ss_pred             CCCCCCCceEEEEEeccCc
Q 008661          235 SEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG~  253 (558)
                      ..++....+.++|||++..
T Consensus        76 ~~~l~~~~l~i~V~d~~~~   94 (124)
T cd08387          76 PQELPKRTLEVLLYDFDQF   94 (124)
T ss_pred             HHHhCCCEEEEEEEECCCC
Confidence            6777788999999999843

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involv

>cd08685 C2_RGS-like C2 domain of the Regulator Of G-Protein Signaling (RGS) family

Probab=98.73  E-value=1.6e-08  Score=91.11  Aligned_cols=60  Identities=15%  Similarity=0.000  Sum_probs=48.1

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+||||+++|.+.   ..+..++||.++++++||+|| |.|.|. +.++++. .+.++|||+++.
T Consensus        30 g~~dpYVkv~l~p~---~~~~~~~kT~v~~~t~~P~~n-E~F~f~v~~~~~~~-~l~v~V~~~~~~   90 (119)
T cd08685          30 GTCNSYVKISLSPD---KEVRFRQKTSTVPDSANPLFH-ETFSFDVNERDYQK-RLLVTVWNKLSK   90 (119)
T ss_pred             CCCCeeEEEEEEeC---CCCcceEeCccccCCCCCccc-cEEEEEcChHHhCC-EEEEEEECCCCC
Confidence            34799999999543   445567899999999999999 999999 5555544 578999998854

This CD contains members of the regulator of G-protein signaling (RGS) family. RGS is a GTPase activating protein which inhibits G-protein mediated signal transduction. The protein is largely cytosolic, but G-protein activation leads to translocation of this protein to the plasma membrane. A nuclear form of this protein has also been described, but its sequence has not been identified. There are multiple alternatively spliced transcript variants in this family with some members having additional domains (ex. PDZ and RGS) downstream of the C2 domain. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind pho

>cd08395 C2C_Munc13 C2 domain third repeat in Munc13 (mammalian uncoordinated) proteins

Probab=98.73  E-value=5.3e-08  Score=88.48  Aligned_cols=69  Identities=9%  Similarity=0.024  Sum_probs=52.5

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCC-CCCCCceEEEEEecc--Ccccc-ceE
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSE-KSPKVADNFEPINIE--GQQET-GIW  259 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e-~l~~v~leveV~D~d--G~~e~-Gv~  259 (558)
                      +.+||||+++|... ..+.+.+++||.++.+|+||+|| |.|.|. +.+ .+....+.|.|||++  +.++. |..
T Consensus        18 g~~DPYVkV~l~g~-~~~~k~~k~kTkv~~~tlnPvwN-E~f~F~v~~~~~~~~~~L~~~V~D~d~~~~dd~IG~~   91 (120)
T cd08395          18 GMFRPFVEVNLIGP-HLSDKKRKFATKSKNNNWSPKYN-ETFQFILGNEDDPESYELHICVKDYCFARDDRLVGVT   91 (120)
T ss_pred             CCCCCEEEEEEecC-CCcccccEeeeEEecCCCCCccC-cEEEEEeeCcCCCceeEEEEEEEEecccCCCCEEEEE
Confidence            66899999999421 11244556799999999999999 999999 543 677788999999997  33443 544

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd08521 C2A_SLP C2 domain first repeat present in Synaptotagmin-like proteins

Probab=98.72  E-value=2.1e-08  Score=89.14  Aligned_cols=60  Identities=8%  Similarity=0.064  Sum_probs=49.0

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG  252 (558)
                      +..||||++++.+.   +....++||.++++++||+|| |.|.|. +..++....+.++|||++.
T Consensus        34 ~~~dpyv~v~l~~~---~~~~~~~kT~v~~~t~~P~wn-e~f~f~i~~~~l~~~~l~i~v~d~~~   94 (123)
T cd08521          34 KRSNPYVKVYLLPD---KSKQSKRKTSVKKNTTNPVFN-ETLKYHISKSQLETRTLQLSVWHHDR   94 (123)
T ss_pred             CCCCcEEEEEEecC---CCcCceeeccccCCCCCCccc-ceEEEeCCHHHhCCCEEEEEEEeCCC
Confidence            35899999999433   333457899999999999999 999999 6566677889999999874

All Slp members basically share an N-terminal Slp homology domain (SHD) and C-terminal tandem C2 domains (named the C2A domain and the C2B domain) with the SHD and C2 domains being separated by a linker sequence of various length. Slp1/JFC1 and Slp2/exophilin 4 promote granule docking to the plasma membrane. Additionally, their C2A domains are both Ca2+ independent, unlike the case in Slp3 and Slp4/granuphilin in which their C2A domains are Ca2+ dependent. It is thought that SHD (except for the Slp4-SHD) functions as a specific Rab27A/B-binding domain. In addition to Slps, rabphilin, Noc2, and Munc13-4 also function as Rab27-binding proteins. It has been demonstrated that Slp3 and Slp4/granuphilin promote dense-core vesicle exocytosis. Slp5 mRNA has been shown to be restricted to human placenta and liver suggesting a role in Rab27A-dependent membrane trafficking in specific tissues. C2 domains fold into

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=98.69  E-value=5e-08  Score=87.04  Aligned_cols=84  Identities=24%  Similarity=0.366  Sum_probs=71.1

Q ss_pred             EEEEEEEecCCCCCC---CCCCCCcEEEEEeCCe-EEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCC
Q 008661           68 ARVEVVEASDMKPSD---LNGLADPYVKGQLGPY-RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDD  143 (558)
Q Consensus        68 L~VtVieArdL~~~D---~~G~sDPYVkV~Lgp~-k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDD  143 (558)
                      |.|+|..|++|.-.+   +.+.+||||.|+++.. +.+|++.   .||.|||+|.|.+.   ....+.|.|||...-..-
T Consensus         1 L~I~V~~~RdvdH~~~~~~~~~~etyV~IKved~~kaRTr~s---rnd~WnE~F~i~Vd---k~nEiel~VyDk~~~~~~   74 (109)
T cd08689           1 LTITITSARDVDHIASPRFSKRPETYVSIKVEDVERARTKPS---RNDRWNEDFEIPVE---KNNEEEVIVYDKGGDQPV   74 (109)
T ss_pred             CEEEEEEEecCccccchhhccCCCcEEEEEECCEEEEeccCC---CCCcccceEEEEec---CCcEEEEEEEeCCCCeec
Confidence            679999999998777   5788999999999884 8888874   79999999999995   467999999998654456


Q ss_pred             ccEEEEEecccccC
Q 008661          144 TLGDCTINISDLRD  157 (558)
Q Consensus       144 fIGev~IpL~eL~~  157 (558)
                      .||..-+.|.+|..
T Consensus        75 Pi~llW~~~sdi~E   88 (109)
T cd08689          75 PVGLLWLRLSDIAE   88 (109)
T ss_pred             ceeeehhhHHHHHH
Confidence            78999999888753

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>cd08389 C2A_Synaptotagmin-14_16 C2A domain first repeat present in Synaptotagmins 14 and 16

Probab=98.67  E-value=2.6e-08  Score=90.10  Aligned_cols=75  Identities=20%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--  233 (558)
                      .|+|+|+|.|.+...+                .+..||||++++.+.     +.+++||.++++ +||+|| |.|.|.  
T Consensus         2 ~G~l~~sl~Y~~~~~~L~V~Vi~a~nL~~~~~~~~~d~yVk~~llp~-----~~~~~kTkv~~~-~nP~fn-E~F~f~~i   74 (124)
T cd08389           2 CGDLDVAFEYDPSARKLTVTVIRAQDIPTKDRGGASSWQVHLVLLPS-----KKQRAKTKVQRG-PNPVFN-ETFTFSRV   74 (124)
T ss_pred             CEEEEEEEEECCCCCEEEEEEEEecCCCchhcCCCCCcEEEEEEccC-----CcceeecccccC-CCCccc-CEEEECCC
Confidence            5888888888776544                133789999988443     235689999888 999999 999996  


Q ss_pred             CCCCCCCCceEEEEEeccCc
Q 008661          234 SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+++....+.++|||++..
T Consensus        75 ~~~~l~~~~L~~~V~~~~~~   94 (124)
T cd08389          75 EPEELNNMALRFRLYGVERM   94 (124)
T ss_pred             CHHHhccCEEEEEEEECCCc
Confidence            56788899999999999843

Synaptotagmin 14 and 16 are membrane-trafficking proteins in specific tissues outside the brain. Both of these contain C-terminal tandem C2 repeats, but only Synaptotagmin 14 has an N-terminal transmembrane domain and a putative fatty-acylation site. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium and this is indeed the case here. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicle

>KOG1013 consensus Synaptic vesicle protein rabphilin-3A [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.66  E-value=2.9e-08  Score=102.91  Aligned_cols=102  Identities=27%  Similarity=0.433  Sum_probs=89.9

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      .+....+|.|......|.|++++|..|..+|.+|.+||||+.++.+     .+.+|.+.++|++|.||+.|.|.+.+.. 
T Consensus       219 rg~i~isl~~~s~~~~l~vt~iRc~~l~ssDsng~sDpyvS~~l~pdv~~~fkkKt~~~K~t~~p~fd~~~~~~i~pgdL  298 (362)
T KOG1013|consen  219 RGAILISLAYSSTTPGLIVTIIRCSHLASSDSNGYSDPYVSQRLSPDVGKKFKKKTQQKKKTLNPEFDEEFFYDIGPGDL  298 (362)
T ss_pred             ccceeeeeccCcCCCceEEEEEEeeeeeccccCCCCCccceeecCCCcchhhcccCcchhccCCccccccccccCCccch
Confidence            4567789999999999999999999999999999999999999976     4679999999999999999999998654 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecc
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINIS  153 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~  153 (558)
                      ....+.|.|||++..+ .+++|-+...+-
T Consensus       299 a~~kv~lsvgd~~~G~s~d~~GG~~~g~~  327 (362)
T KOG1013|consen  299 AYKKVALSVGDYDIGKSNDSIGGSMLGGY  327 (362)
T ss_pred             hcceEEEeecccCCCcCccCCCccccccc
Confidence            3558999999999986 889987766544

>cd08386 C2A_Synaptotagmin-7 C2A domain first repeat present in Synaptotagmin 7

Probab=98.64  E-value=5.6e-08  Score=86.91  Aligned_cols=75  Identities=12%  Similarity=0.171  Sum_probs=55.3

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--  233 (558)
                      .|+|+|++.|.+....                .+.+||||++++...   +  ..++||.++++++||+|| |.|.|.  
T Consensus         2 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~---~--~~~~kT~v~~~t~~P~Wn-e~f~f~~~   75 (125)
T cd08386           2 LGRIQFSVSYDFQESTLTLKILKAVELPAKDFSGTSDPFVKIYLLPD---K--KHKLETKVKRKNLNPHWN-ETFLFEGF   75 (125)
T ss_pred             ccEEEEEEEECCCCCEEEEEEEEecCCCCccCCCCCCceEEEEECCC---C--CcceeeeeecCCCCCccc-eeEEEccc
Confidence            4666677666544322                234899999999432   1  235799999999999999 999996  


Q ss_pred             CCCCCCCCceEEEEEeccC
Q 008661          234 SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG  252 (558)
                      +.+.+....+.++|||++.
T Consensus        76 ~~~~l~~~~l~~~v~d~d~   94 (125)
T cd08386          76 PYEKLQQRVLYLQVLDYDR   94 (125)
T ss_pred             CHHHhCCCEEEEEEEeCCC
Confidence            4555667789999999884

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Synaptotagmin 7, a member of class 2 synaptotagmins, is located in presynaptic plasma membranes in neurons, dense-core vesicles in endocrine cells, and lysosomes in fibroblasts. It has been shown to play a role in regulation of Ca2+-dependent lysosomal exocytosis in fibroblasts and may also function as a vesicular Ca2+-sensor. It is distinguished from the other synaptotagmins by having over 12 splice forms. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic ves

>cd08390 C2A_Synaptotagmin-15-17 C2A domain first repeat present in Synaptotagmins 15 and 17

Probab=98.61  E-value=4.7e-08  Score=87.05  Aligned_cols=58  Identities=12%  Similarity=0.087  Sum_probs=47.7

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      ..||||++++.+.   +  .+++||.++++++||+|| |.|.|. +..+++...+.|+|||+++.
T Consensus        35 ~~dpyV~v~l~~~---~--~~~~~T~v~~~~~~P~wn-e~f~f~i~~~~l~~~~l~i~v~d~~~~   93 (123)
T cd08390          35 HCDPFVKVCLLPD---E--RRSLQSKVKRKTQNPNFD-ETFVFQVSFKELQRRTLRLSVYDVDRF   93 (123)
T ss_pred             CCCcEEEEEEeeC---C--CCceEeeeEcCCCCCccc-eEEEEEcCHHHhcccEEEEEEEECCcC
Confidence            4799999999433   2  234789999999999999 999999 66677778999999998854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. It is thought to be involved in the trafficking and exocytosis of secretory vesicles in non-neuronal tissues and is Ca2+ independent. Human synaptotagmin 15 has 2 alternatively spliced forms that encode proteins with different C-termini. The larger, SYT15a, contains a N-terminal TM region, a putative fatty-acylation site, and 2 tandem C terminal C2 domains. The smaller, SYT15b, lacks the C-terminal portion of the second C2 domain. Unlike most other synaptotagmins it is nearly absent in the brain and rather is found in the heart, lungs, skeletal muscle, and testis. Synaptotagmin 17 is located in the brain, kidney, and prostate and is thought to be a peripheral membrane protein. Previously all synaptotagmins were thought to be calcium sensors in the regulat

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=98.60  E-value=2e-07  Score=105.05  Aligned_cols=116  Identities=23%  Similarity=0.338  Sum_probs=90.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEE-EeeeecCCCCCccc-eEEEEeeccCCCCceEEEEEeecC
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRF-RTKTQRKTLSPKWH-EEFNIPISTWDSPNVLVIEVRDKD  138 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~-KTkVikkTlNPvWn-EtF~F~V~~~e~~~tL~V~V~D~D  138 (558)
                      -.|.|.|+.|++|+... .|.+.|||.|.+..     .++ +|.|..+++||+|| |.|+|.|... .-..|+|.|||.|
T Consensus      1065 ~~lsv~vigaRHL~k~g-r~i~cPfVevEiiGa~~Dt~~~~t~~V~dNGlnPiWn~e~ftFeI~nP-e~A~lRF~V~eeD 1142 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLG-RSIACPFVEVEIIGAEYDTNKFKTTVVNDNGLNPIWNPEKFTFEIYNP-EFAFLRFVVYEED 1142 (1267)
T ss_pred             eEEEEEEeeccccccCC-CCccCCcEEEEEeccccCCCceEEEEeccCCCCCCCCCcceEEEeeCC-ceEEEEEEEeccc
Confidence            46889999999998443 45677999999843     344 55567799999999 9999999974 3458999999999


Q ss_pred             CCC-CCccEEEEEecccccCCCceeeeeecCCCC-----ceEEEEEEEEEeccC
Q 008661          139 HFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-----IGRLHLAITVLEESA  186 (558)
Q Consensus       139 ~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~-----~GeL~LsL~y~p~~~  186 (558)
                      .++ ..|||++.+|+..+..+-+   -++|++..     ...|++.+...+..+
T Consensus      1143 mfs~~~FiaqA~yPv~~ik~GfR---sVpLkN~ySEdlELaSLLv~i~m~~~~~ 1193 (1267)
T KOG1264|consen 1143 MFSDPNFLAQATYPVKAIKSGFR---SVPLKNGYSEDLELASLLVFIEMRPVLE 1193 (1267)
T ss_pred             ccCCcceeeeeecchhhhhccce---eeecccCchhhhhhhhheeeeEeccccC
Confidence            999 6699999999999987643   36776642     356667776666544

>KOG0696 consensus Serine/threonine protein kinase [Signal transduction mechanisms]

Probab=98.58  E-value=5.2e-08  Score=104.02  Aligned_cols=82  Identities=15%  Similarity=0.155  Sum_probs=63.3

Q ss_pred             CceEEEEEEEEEecc---------C-----CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCC
Q 008661          171 KIGRLHLAITVLEES---------A-----KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSE  236 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~---------~-----~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e  236 (558)
                      .+|+|.|.+......         +     .-+++|||||+.|.+   ..+-..|+||..++.||||+|| |.|.|++..
T Consensus       167 ~RGrl~l~~~~~~~~l~v~i~ea~NLiPMDpNGlSDPYvk~kliP---D~~~~sKqKTkTik~~LNP~wN-Etftf~Lkp  242 (683)
T KOG0696|consen  167 RRGRLYLEAHIKRDVLTVTIKEAKNLIPMDPNGLSDPYVKLKLIP---DPKNESKQKTKTIKATLNPVWN-ETFTFKLKP  242 (683)
T ss_pred             hcceEEEEEEecCceEEEEehhhccccccCCCCCCCcceeEEecc---CCcchhhhhhhhhhhhcCcccc-ceeEEeccc
Confidence            468877776653321         1     135699999999955   4666788899999999999999 999999666


Q ss_pred             CCCCCceEEEEEeccCcccc
Q 008661          237 KSPKVADNFEPINIEGQQET  256 (558)
Q Consensus       237 ~l~~v~leveV~D~dG~~e~  256 (558)
                      +.....+.++|||||.....
T Consensus       243 ~DkdrRlsiEvWDWDrTsRN  262 (683)
T KOG0696|consen  243 SDKDRRLSIEVWDWDRTSRN  262 (683)
T ss_pred             ccccceeEEEEecccccccc
Confidence            66677888999999965543

>cd08690 C2_Freud-1 C2 domain found in 5' repressor element under dual repression binding protein-1 (Freud-1)

Probab=98.57  E-value=1.5e-07  Score=89.32  Aligned_cols=77  Identities=14%  Similarity=0.005  Sum_probs=57.8

Q ss_pred             ceEEEEEEEEE---eccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCC------CCCCC
Q 008661          172 IGRLHLAITVL---EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSE------KSPKV  241 (558)
Q Consensus       172 ~GeL~LsL~y~---p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e------~l~~v  241 (558)
                      .|+|.+..+--   +..-.-+.+|||||+++   .+.+....+.||.++++|+||+|| |.|.|. ...      .+...
T Consensus         3 ~~el~i~~~~~~~l~~~~~~~~~DpYVk~~l---~~p~~~~~k~KT~v~k~TlnPvfN-E~f~f~I~~~~~~~~R~l~~~   78 (155)
T cd08690           3 SIELTIVRCIGIPLPSGWNPKDLDTYVKFEF---PYPNEEPQSGKTSTIKDTNSPEYN-ESFKLNINRKHRSFQRVFKRH   78 (155)
T ss_pred             ceEEEEEEeeccccCCCcCCCCCCeEEEEEE---ecCCCCCceeecCcccCCCCCccc-ceEEEEeccccchhhhhccCC
Confidence            45666555432   22222334899999998   444567788999999999999999 999999 443      46678


Q ss_pred             ceEEEEEeccC
Q 008661          242 ADNFEPINIEG  252 (558)
Q Consensus       242 ~leveV~D~dG  252 (558)
                      ++.++|||+++
T Consensus        79 ~L~~~V~d~~~   89 (155)
T cd08690          79 GLKFEVYHKGG   89 (155)
T ss_pred             cEEEEEEeCCC
Confidence            89999999986

Freud-1 is a novel calcium-regulated repressor that negatively regulates basal 5-HT1A receptor expression in neurons. It may also play a role in the altered regulation of 5-HT1A receptors associated with anxiety or major depression. Freud-1 contains two DM-14 basic repeats, a helix-loop-helix DNA binding domain, and a C2 domain. The Freud-1 C2 domain is thought to be calcium insensitive and it lacks several acidic residues that mediate calcium binding of the PKC C2 domain. In addition, it contains a poly-basic insert that is not present in calcium-dependent C2 domains and may function as a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules tha

>cd04035 C2A_Rabphilin_Doc2 C2 domain first repeat present in Rabphilin and Double C2 domain

Probab=98.53  E-value=1.9e-07  Score=83.54  Aligned_cols=61  Identities=8%  Similarity=0.052  Sum_probs=48.4

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+|||+++++...   .....++||.++++++||+|| +.|.|.  +..++....+.+++||++..
T Consensus        34 ~~~dpyv~v~~~~~---~~~~~~~rT~v~~~~~~P~Wn-e~f~f~~~~~~~~~~~~l~~~v~d~~~~   96 (123)
T cd04035          34 GLSDPYVKLNLLPG---ASKATKLRTKTVHKTRNPEFN-ETLTYYGITEEDIQRKTLRLLVLDEDRF   96 (123)
T ss_pred             CCCCceEEEEEecC---CCCCCceeeeeecCCCCCCcc-ceEEEcCCCHHHhCCCEEEEEEEEcCCc
Confidence            45899999999433   334567899999999999999 999996  44556667899999998754

Rabphilin is found neurons and in neuroendrocrine cells, while Doc2 is found not only in the brain but in tissues, including mast cells, chromaffin cells, and osteoblasts. Rabphilin and Doc2s share highly homologous tandem C2 domains, although their N-terminal structures are completely different: rabphilin contains an N-terminal Rab-binding domain (RBD),7 whereas Doc2 contains an N-terminal Munc13-1-interacting domain (MID). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04009 C2B_Munc13-like C2 domain second repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=98.52  E-value=2.1e-07  Score=84.96  Aligned_cols=80  Identities=13%  Similarity=0.027  Sum_probs=56.8

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      .|+|.+++.|.+....                .+.+||||++++..... .....++||.++++|+||+|| |.|.|. .
T Consensus         2 ~G~l~~~l~y~~~~~~L~V~Vi~A~~L~~~~~~g~~dPyv~v~l~~~~~-~~~~~~~kT~v~~~t~nP~wn-E~f~f~i~   79 (133)
T cd04009           2 YGVLTVKAYYRASEQSLRVEILNARNLLPLDSNGSSDPFVKVELLPRHL-FPDVPTPKTQVKKKTLFPLFD-ESFEFNVP   79 (133)
T ss_pred             ceEEEEEEEEcCCCCEEEEEEEEeeCCCCcCCCCCCCCEEEEEEECCCc-CccccccccccCcCCCCCccC-CEEEEEec
Confidence            4666666666553322                23489999999943210 013467899999999999999 999999 3


Q ss_pred             C--CCCCCCceEEEEEeccCc
Q 008661          235 S--EKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       235 ~--e~l~~v~leveV~D~dG~  253 (558)
                      .  ..+....+.++|||++..
T Consensus        80 ~~~~~~~~~~l~~~V~d~d~~  100 (133)
T cd04009          80 PEQCSVEGALLLFTVKDYDLL  100 (133)
T ss_pred             hhhcccCCCEEEEEEEecCCC
Confidence            3  234567899999998743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, s

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=98.46  E-value=9.9e-07  Score=97.10  Aligned_cols=155  Identities=15%  Similarity=0.117  Sum_probs=113.2

Q ss_pred             eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC----C-CCccEEEEEecccccCCCceeeeeecCC---
Q 008661           98 YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----V-DDTLGDCTINISDLRDGQRHDMWIPLQN---  169 (558)
Q Consensus        98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~----s-DDfIGev~IpL~eL~~~~~~e~W~~L~~---  169 (558)
                      ...+|.++++.+||.|-+.|.+... ++..+.|+|.++|.+..    . .+|+|++...|..+........-+-|++   
T Consensus        41 e~~rte~i~~~~~p~f~~~~~l~y~-fE~vQ~l~~~~~~~~~~~~~l~~~dflg~~~c~l~~ivs~~~~~~~l~~~~~~~  119 (529)
T KOG1327|consen   41 EVGRTEVIRNVLNPFFTKKFLLQYR-FEKVQLLRFEVYDIDSRTPDLSSADFLGTAECTLSQIVSSSGLTGPLLLKPGKN  119 (529)
T ss_pred             cccceeeeeccCCccceeeechhhe-eeeeeeEEEEEeecCCccCCcchhcccceeeeehhhhhhhhhhhhhhhcccCcc
Confidence            3458999999999999999988877 46788999999998765    2 7899999999998876544333333332   


Q ss_pred             CCceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec
Q 008661          170 IKIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV  233 (558)
Q Consensus       170 k~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe  233 (558)
                      ...|+|.+.+.-......                .+.+|||..++-...  .+....-++|++.++|+||.|-.......
T Consensus       120 ~~~g~iti~aee~~~~~~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~--d~s~~~~~~tEv~~n~l~p~w~~~~i~~~  197 (529)
T KOG1327|consen  120 AGSGTITISAEEDESDNDVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVD--DGSTQMLYRTEVVKNTLNPQWAPFSISLQ  197 (529)
T ss_pred             CCcccEEEEeecccccCceeeeeeeeeecCcccccccCCcceEEEEecC--CCceeeccccceeccCCCCcccccccchh
Confidence            356777776664332211                233899998887332  56677789999999999999984444444


Q ss_pred             -CCCCCCCCceEEEEEeccCccc
Q 008661          234 -SSEKSPKVADNFEPINIEGQQE  255 (558)
Q Consensus       234 -p~e~l~~v~leveV~D~dG~~e  255 (558)
                       .+......++.+++||++....
T Consensus       198 ~l~~~~~~~~~~i~~~d~~~~~~  220 (529)
T KOG1327|consen  198 SLCSKDGNRPIQIECYDYDSNGK  220 (529)
T ss_pred             hhcccCCCCceEEEEeccCCCCC
Confidence             5565667888999999985544

>cd04041 C2A_fungal C2 domain first repeat; fungal group

Probab=98.46  E-value=7.4e-07  Score=78.76  Aligned_cols=59  Identities=8%  Similarity=0.032  Sum_probs=46.0

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCC-CCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEK-SPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~-l~~v~leveV~D~dG~  253 (558)
                      +.+|||+++++...   +  ..++||.++++++||+|| |.|.|. ...+ .....+.++|||++..
T Consensus        21 ~~~Dpyv~v~~~~~---~--~~~~kT~v~~~t~nP~Wn-e~f~f~~~~~~~~~~~~l~~~V~d~d~~   81 (111)
T cd04041          21 GSSDPYVTASFAKF---G--KPLYSTRIIRKDLNPVWE-ETWFVLVTPDEVKAGERLSCRLWDSDRF   81 (111)
T ss_pred             CCCCccEEEEEccC---C--CccEeeeeECCCCCCccc-eeEEEEeCchhccCCCEEEEEEEeCCCC
Confidence            56899999999432   2  245799999999999999 999997 3333 3456899999999843

C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligan

>cd08691 C2_NEDL1-like C2 domain present in NEDL1 (NEDD4-like ubiquitin protein ligase-1)

Probab=98.34  E-value=2.1e-06  Score=79.72  Aligned_cols=99  Identities=14%  Similarity=0.047  Sum_probs=62.8

Q ss_pred             CCCCCCcceEEecccCCCCce--------eeEEEeEecCCCCCCcc-CCCceeec-CCCCCCCCceEEEEEeccCccc--
Q 008661          188 QGVDSPCDGGTLNKEGMGNKE--------DQSNKEDIRESFANETT-DKGSFSSV-SSEKSPKVADNFEPINIEGQQE--  255 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~kr--------lkKKKT~VkK~TlNPvw-N~E~F~Fe-p~e~l~~v~leveV~D~dG~~e--  255 (558)
                      .+.+|||+++.+...   .+.        .+++||.++++++||+| | |.|.|. +.+    -.+.++|||+++...  
T Consensus        18 fg~~DPyvki~~~~~---~~~~~~~~~~~~~~~kT~v~~~tlnP~W~n-E~f~f~v~~~----~~L~v~V~D~~~~~~~~   89 (137)
T cd08691          18 FFNPDPYVKISIQPG---KRHIFPALPHHGQECRTSIVENTINPVWHR-EQFVFVGLPT----DVLEIEVKDKFAKSRPI   89 (137)
T ss_pred             CCCCCceEEEEEECC---CcccccccccccceeeeeeEcCCCCCceEc-eEEEEEcCCC----CEEEEEEEecCCCCCcc
Confidence            355899999999433   222        35789999999999999 7 999998 322    368999999875422  


Q ss_pred             ---c-ceEEecCCccccccCccccCCCCCcccceeecCCCCccCCCCCCCCCC
Q 008661          256 ---T-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSL  304 (558)
Q Consensus       256 ---~-Gv~v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~~~~~~~~~~~~~~~  304 (558)
                         . |-+ .-+-+.+.      .+.-.....+|+++.   +.++.+.++|.+
T Consensus        90 ~~d~lG~~-~i~l~~l~------~~~~~~~~~~~~~l~---k~~~~s~v~G~~  132 (137)
T cd08691          90 IRRFLGKL-SIPVQRLL------ERHAIGDQELSYTLG---RRTPTDHVSGQL  132 (137)
T ss_pred             CCceEEEE-EEEHHHhc------ccccCCceEEEEECC---cCCCCCcEEEEE
Confidence               1 332 22232221      111233467788776   445566665544

NEDL1 (AKA HECW1(HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1)) is a newly identified HECT-type E3 ubiquitin protein ligase highly expressed in favorable neuroblastomas. In vertebrates it is found primarily in neuronal tissues, including the spinal cord. NEDL1 is thought to normally function in the quality control of cellular proteins by eliminating misfolded proteins. This is thought to be accomplished via a mechanism analogous to that of ER-associated degradation by forming tight complexes and aggregating misfolded proteins that have escaped ubiquitin-mediated degradation. NEDL1, is composed of a C2 domain, two WW domains, and a ubiquitin ligase Hect domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are C

>cd04037 C2E_Ferlin C2 domain fifth repeat in Ferlin

Probab=98.34  E-value=1.4e-06  Score=78.82  Aligned_cols=86  Identities=8%  Similarity=0.005  Sum_probs=59.6

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC--cccc-ceE-EecC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VHQP  263 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG--~~e~-Gv~-v~~p  263 (558)
                      .+.+|||+++++.      ....++||.++++++||+|| |.|.|. ........+.++|||++.  .++. |-. +...
T Consensus        18 ~g~~DPYv~v~~~------~~~~~~kT~~v~~t~nP~Wn-e~f~f~-~~~~~~~~L~~~V~d~d~~~~dd~iG~~~i~l~   89 (124)
T cd04037          18 NGKSDPYLKIKLG------KKKINDRDNYIPNTLNPVFG-KMFELE-ATLPGNSILKISVMDYDLLGSDDLIGETVIDLE   89 (124)
T ss_pred             CCCCCcEEEEEEC------CeeccceeeEEECCCCCccc-eEEEEE-ecCCCCCEEEEEEEECCCCCCCceeEEEEEeec
Confidence            4568999999992      22244678888899999999 999997 222345678999999984  3333 544 3222


Q ss_pred             CccccccCccccCCCCCc
Q 008661          264 GSEVAQTWEPRKGKNRRL  281 (558)
Q Consensus       264 gt~~~~hW~~~l~~~r~~  281 (558)
                      .-...+||..|+..+..+
T Consensus        90 ~~~~~~~~~~~~~~~~~~  107 (124)
T cd04037          90 DRFFSKHRATCGLPPTYE  107 (124)
T ss_pred             ccccchHHHhccCCCccc
Confidence            222358999999888666

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PLN02352 phospholipase D epsilon

Probab=98.34  E-value=3e-06  Score=97.06  Aligned_cols=114  Identities=14%  Similarity=0.181  Sum_probs=88.2

Q ss_pred             ceEEEEEEEEecCCCCC----CC-CCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecC
Q 008661           65 VAYARVEVVEASDMKPS----DL-NGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD  138 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~----D~-~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D  138 (558)
                      .|.|.++|++|+-+...    .. ....||||.|.++. ...+|   .+.-||+|+|.|.+.+... ....+.|.|.|  
T Consensus         9 hg~l~~~i~~~~~~~~~~~~~~~~~~~~~~y~tv~~~~~~v~rt---~~~~~p~w~e~f~i~~ah~-~~~~~~f~vk~--   82 (758)
T PLN02352          9 HGTLEATIFDATPYTPPFPFNCIFLNGKATYVTIKIGNKKVAKT---SHEYDRVWNQTFQILCAHP-LDSTITITLKT--   82 (758)
T ss_pred             ccceEEEEEEeeehhhcccccccccCCCCceEEEEeCCcEEecC---CCCCCCccccceeEEeeee-cCCcEEEEEec--
Confidence            68999999999843221    11 11239999999987 45688   5566999999999999862 22579999988  


Q ss_pred             CCCCCccEEEEEecccccCCCc-eeeeeecCCCC----c-eEEEEEEEEEeccC
Q 008661          139 HFVDDTLGDCTINISDLRDGQR-HDMWIPLQNIK----I-GRLHLAITVLEESA  186 (558)
Q Consensus       139 ~~sDDfIGev~IpL~eL~~~~~-~e~W~~L~~k~----~-GeL~LsL~y~p~~~  186 (558)
                        +..+||.+.||+.+|..+.. .+.||++.+..    . ..|+++|.|.+...
T Consensus        83 --~~~~ig~~~~p~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~  134 (758)
T PLN02352         83 --KCSILGRFHIQAHQIVTEASFINGFFPLIMENGKPNPELKLRFMLWFRPAEL  134 (758)
T ss_pred             --CCeEEEEEEEEHHHhhCCCcccceEEEcccCCCCCCCCCEEEEEEEEEEhhh
Confidence              46799999999999988866 89999996521    3 48999999998754

>cd08682 C2_Rab11-FIP_classI C2 domain found in Rab11-family interacting proteins (FIP) class I

Probab=98.33  E-value=1.5e-06  Score=78.35  Aligned_cols=57  Identities=7%  Similarity=0.010  Sum_probs=46.1

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC---CCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS---EKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~---e~l~~v~leveV~D~dG~  253 (558)
                      .+.+||||++.+.        ..++||.++++++||+|| |.|.|. +.   +++....+.++|||++..
T Consensus        17 ~g~~dpYv~v~l~--------~~~~kT~v~~~t~nP~Wn-e~f~F~v~~~~~~~~~~~~l~~~v~d~~~~   77 (126)
T cd08682          17 SGTNDAYVIIQLG--------KEKYSTSVKEKTTSPVWK-EECSFELPGLLSGNGNRATLQLTVMHRNLL   77 (126)
T ss_pred             CcCCCceEEEEEC--------CeeeeeeeecCCCCCEeC-ceEEEEecCcccCCCcCCEEEEEEEEcccc
Confidence            4458999999992        145799999999999999 999998 33   346677899999999843

Rab GTPases recruit various effector proteins to organelles and vesicles. Rab11-family interacting proteins (FIPs) are involved in mediating the role of Rab11. FIPs can be divided into three classes: class I FIPs (Rip11a, Rip11b, RCP, and FIP2) which contain a C2 domain after N-terminus of the protein, class II FIPs (FIP3 and FIP4) which contain two EF-hands and a proline rich region, and class III FIPs (FIP1) which exhibits no homology to known protein domains. All FIP proteins contain a highly conserved, 20-amino acid motif at the C-terminus of the protein, known as Rab11/25 binding domain (RBD). Class I FIPs are thought to bind to endocytic membranes via their C2 domain, which interacts directly with phospholipids. Class II FIPs do not have any membrane binding domains leaving much to speculate about the mechanism involving FIP3 and FIP4 interactions with endocytic membranes. The member

>cd08686 C2_ABR C2 domain in the Active BCR (Breakpoint cluster region) Related protein

Probab=98.32  E-value=1.9e-06  Score=78.45  Aligned_cols=66  Identities=5%  Similarity=-0.144  Sum_probs=49.4

Q ss_pred             EEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661          179 ITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE  251 (558)
Q Consensus       179 L~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d  251 (558)
                      +......+-.+.+||||++.++..   +....+.||.++++|+||+|| |.|.|+..   ...++.+.|||+.
T Consensus         3 V~V~~A~~L~~~sDPYV~l~v~~~---~~~~~~~KTk~i~~TlnPvWn-E~F~i~l~---~s~~L~~~v~d~~   68 (118)
T cd08686           3 VIVHSAQGFKQSANLYCTLEVDSF---GYFVKKAKTRVCRDTTEPNWN-EEFEIELE---GSQTLRILCYEKC   68 (118)
T ss_pred             EEEEeCCCCCCCCCCEEEEEEcCc---cccceeeeeeeecCCCCCccc-eEEEEEeC---CCCEEEEEEEEcc
Confidence            444444444556899999999543   233467899999999999999 99999932   2448999999983

The ABR protein is similar to the breakpoint cluster region protein. It has homology to guanine nucleotide exchange proteins and GTPase-activating proteins (GAPs). ABR is expressed primarily in the brain, but also includes non-neuronal tissues such as the heart. It has been associated with human diseases such as Miller-Dieker syndrome in which mental retardation and malformations of the heart are present. ABR contains a RhoGEF domain and a PH-like domain upstream of its C2 domain and a RhoGAP domain downstream of this domain. A few members also contain a Bcr-Abl oncoprotein oligomerization domain at the very N-terminal end. Splice variants of ABR have been identified. ABR is found in a wide variety of organisms including chimpanzee, dog, mouse, rat, fruit fly, and mosquito. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arr

>cd04010 C2B_RasA3 C2 domain second repeat present in RAS p21 protein activator 3 (RasA3)

Probab=98.30  E-value=2.1e-06  Score=80.73  Aligned_cols=61  Identities=18%  Similarity=0.208  Sum_probs=48.4

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C-------------CCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S-------------SEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p-------------~e~l~~v~leveV~D~dG~  253 (558)
                      +.+||||++++..   ...+..++||.++++|+||+|| |.|.|. .             .+++....+.++|||++..
T Consensus        17 g~sDPYV~V~l~~---~~~k~~~~kT~v~~~t~nP~wN-E~F~F~v~~~~~~~~~~~~~~~~~~~~~~L~i~V~d~~~~   91 (148)
T cd04010          17 GTCDPYASVTLIY---SNKKQDTKRTKVKKKTNNPQFD-EAFYFDVTIDSSPEKKQFEMPEEDAEKLELRVDLWHASMG   91 (148)
T ss_pred             CCCCceEEEEEeC---CcccCcccCCccEeCCCCCccc-eEEEEEEecccccccccccCCcccccEEEEEEEEEcCCCC
Confidence            4589999999943   2344567899999999999999 999998 2             2345567899999998854

RasA3 are members of GTPase activating protein 1 (GAP1), a Ras-specific GAP, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA3 contains an N-terminal C2 domain, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain

>cd04039 C2_PSD C2 domain present in Phosphatidylserine decarboxylase (PSD)

Probab=98.28  E-value=3.1e-06  Score=75.17  Aligned_cols=54  Identities=7%  Similarity=0.018  Sum_probs=43.8

Q ss_pred             CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      +|||+++++.      +  +++||.++++++||+|| |.|.|..........+.|+|||++..
T Consensus        26 ~DPYv~v~~~------~--~~~kT~v~~~t~nPvWn-e~f~f~v~~~~~~~~L~~~V~D~d~~   79 (108)
T cd04039          26 MDPFVIISFG------R--RVFRTSWRRHTLNPVFN-ERLAFEVYPHEKNFDIQFKVLDKDKF   79 (108)
T ss_pred             cCceEEEEEC------C--EeEeeeeecCCCCCccc-ceEEEEEeCccCCCEEEEEEEECCCC
Confidence            7999999982      2  35689999999999999 99999843434457899999999843

PSD is involved in the biosynthesis of aminophospholipid by converting phosphatidylserine (PtdSer) to phosphatidylethanolamine (PtdEtn). There is a single C2 domain present and it is thought to confer PtdSer binding motif that is common to PKC and synaptotagmin. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.28  E-value=5e-07  Score=95.23  Aligned_cols=136  Identities=24%  Similarity=0.270  Sum_probs=106.8

Q ss_pred             cHHHHHHHHHHHH--HHhccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCCCCC-CCCCCcEEEEE
Q 008661           18 GIAGWLDKLLSIA--FEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQ   94 (558)
Q Consensus        18 GLs~fl~~lI~~a--l~~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~-~G~sDPYVkV~   94 (558)
                      -+..|++.+-...  -.+++..|+|-.|.+..              ....|.|.|.|++|++|..+.. ...++|||+||
T Consensus       233 ~~~~FvDglGP~q~VgRq~la~P~mg~iq~~~--------------~d~~g~l~vEii~ar~l~~k~~~k~~~apyVkVY  298 (405)
T KOG2060|consen  233 PRGDFVDGLGPAQLVGRQTLAAPNMGDIQIAL--------------MDSKGDLEVEIIRARGLVVKPGSKSLPAPYVKVY  298 (405)
T ss_pred             chhhhhcccCchhhhhhhhhcCcccccchhhh--------------hcccCceeEEEEecccccccCCcccccCceeEEE
Confidence            3456777776443  34457777776555442              3467899999999999987653 33699999999


Q ss_pred             eCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEe-ecCCCC-CCccEEEEEecccccCCC-ceeeeee
Q 008661           95 LGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIP  166 (558)
Q Consensus        95 Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~-D~D~~s-DDfIGev~IpL~eL~~~~-~~e~W~~  166 (558)
                      +..     .+.+|+..++|+.|.|.....|.-.+  ....|.+.|| |+.++- +.|+|.+++-|.+|.... ....||+
T Consensus       299 lL~~g~c~ak~ktk~A~kT~~plyqq~l~f~~sp--~~k~Lq~tv~gdygRmd~k~fmg~aqi~l~eL~ls~~~~igwyK  376 (405)
T KOG2060|consen  299 LLENGFCIAKKKTKSARKTLDPLYQQQLSFDQSP--PGKYLQGTVWGDYGRMDHKSFMGVAQIMLDELNLSSSPVIGWYK  376 (405)
T ss_pred             EcCCCceecccccccccccCchhhhhhhhhccCC--CccEEEEEEeccccccchHHHhhHHHHHhhhhccccccceeeee
Confidence            966     46799999999999999888887664  5779999999 677776 789999999999998776 6789999


Q ss_pred             cCC
Q 008661          167 LQN  169 (558)
Q Consensus       167 L~~  169 (558)
                      |.+
T Consensus       377 lfg  379 (405)
T KOG2060|consen  377 LFG  379 (405)
T ss_pred             ccC
Confidence            985

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.27  E-value=5.1e-07  Score=103.93  Aligned_cols=91  Identities=37%  Similarity=0.487  Sum_probs=80.7

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE--EEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF  140 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k--~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~  140 (558)
                      +....++|+|++|.+|.+.|.+|.+||||++.++...  -++..+.+|+||+|.+.|.+.... +..+.|.+.|||+|.+
T Consensus       610 pi~~LvrVyvv~A~~L~p~D~ng~adpYv~l~lGk~~~~d~~~yip~tlnPVfgkmfel~~~l-p~ek~l~v~vyd~D~~  688 (1105)
T KOG1326|consen  610 PIKCLVRVYVVEAFSLQPSDGNGDADPYVKLLLGKKRTLDRAHYIPNTLNPVFGKMFELECLL-PFEKDLIVEVYDHDLE  688 (1105)
T ss_pred             cceeeEEEEEEEeeeccccCCCCCcCceeeeeeccchhhhhhhcCcCCCCcHHHHHHHhhccc-chhhcceeEEEEeecc
Confidence            4456778999999999999999999999999999865  477789999999999999988773 4577899999999999


Q ss_pred             C-CCccEEEEEeccc
Q 008661          141 V-DDTLGDCTINISD  154 (558)
Q Consensus       141 s-DDfIGev~IpL~e  154 (558)
                      + |+.||+..++|+.
T Consensus       689 ~~d~~iget~iDLEn  703 (1105)
T KOG1326|consen  689 AQDEKIGETTIDLEN  703 (1105)
T ss_pred             cccchhhceehhhhh
Confidence            8 9999999999885

>cd04032 C2_Perforin C2 domain of Perforin

Probab=98.26  E-value=2.7e-06  Score=78.12  Aligned_cols=74  Identities=12%  Similarity=0.039  Sum_probs=51.8

Q ss_pred             CceEEEEEEEEEecc--CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661          171 KIGRLHLAITVLEES--AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI  248 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~--~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~  248 (558)
                      ..|.|.|.|.--..-  ...+.+|||+++++.     ++   ++||.++++++||+|| |.|.|..........+.|+||
T Consensus        26 ~~~~L~V~V~~A~~L~~d~~g~~DPYVkV~~~-----~~---~~kT~vi~~t~nPvWN-E~F~f~~~~~~~~~~L~v~V~   96 (127)
T cd04032          26 GLATLTVTVLRATGLWGDYFTSTDGYVKVFFG-----GQ---EKRTEVIWNNNNPRWN-ATFDFGSVELSPGGKLRFEVW   96 (127)
T ss_pred             CcEEEEEEEEECCCCCcCcCCCCCeEEEEEEC-----Cc---cccCceecCCCCCcCC-CEEEEecccCCCCCEEEEEEE
Confidence            345555555432211  224458999999982     22   7899999999999999 999996222235678999999


Q ss_pred             eccCc
Q 008661          249 NIEGQ  253 (558)
Q Consensus       249 D~dG~  253 (558)
                      |++..
T Consensus        97 D~d~~  101 (127)
T cd04032          97 DRDNG  101 (127)
T ss_pred             eCCCC
Confidence            99843

Perforin contains a single copy of a C2 domain in its C-terminus and plays a role in lymphocyte-mediated cytotoxicity. Mutations in perforin leads to familial hemophagocytic lymphohistiocytosis type 2. The function of perforin is calcium dependent and the C2 domain is thought to confer this binding to target cell membranes. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few

>cd04011 C2B_Ferlin C2 domain second repeat in Ferlin

Probab=98.26  E-value=4e-06  Score=73.88  Aligned_cols=70  Identities=10%  Similarity=0.045  Sum_probs=51.1

Q ss_pred             EEEEEEEEeccCC-CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec---CCCCCCCCceEEEEEec
Q 008661          175 LHLAITVLEESAK-QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV---SSEKSPKVADNFEPINI  250 (558)
Q Consensus       175 L~LsL~y~p~~~~-l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe---p~e~l~~v~leveV~D~  250 (558)
                      ..|++.......- .+..||||++.+..        +++||.++++++||+|| |.|.|.   +..++....+.++|||+
T Consensus         4 ~~l~V~v~~a~~L~~~~~dpyv~v~~~~--------~~~kT~~~~~t~nP~wn-e~f~f~~~~~~~~l~~~~l~i~V~d~   74 (111)
T cd04011           4 FQVRVRVIEARQLVGGNIDPVVKVEVGG--------QKKYTSVKKGTNCPFYN-EYFFFNFHESPDELFDKIIKISVYDS   74 (111)
T ss_pred             EEEEEEEEEcccCCCCCCCCEEEEEECC--------EeeeeeEEeccCCCccc-cEEEEecCCCHHHHhcCeEEEEEEcC
Confidence            3445554443321 34589999999931        35789999999999999 999997   33445567899999999


Q ss_pred             cCc
Q 008661          251 EGQ  253 (558)
Q Consensus       251 dG~  253 (558)
                      +..
T Consensus        75 ~~~   77 (111)
T cd04011          75 RSL   77 (111)
T ss_pred             ccc
Confidence            853

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04017 C2D_Ferlin C2 domain fourth repeat in Ferlin

Probab=98.24  E-value=5.8e-06  Score=75.63  Aligned_cols=87  Identities=13%  Similarity=0.010  Sum_probs=58.9

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec---CCC---CC--CCCceEEEEEeccCcc--cc-
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV---SSE---KS--PKVADNFEPINIEGQQ--ET-  256 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe---p~e---~l--~~v~leveV~D~dG~~--e~-  256 (558)
                      .+.+|||+++.+.        ..++||.++++|+||+|| |.|.|.   +..   .+  ....+.++|||++...  +. 
T Consensus        19 ~g~~dpyv~v~~~--------~~~~kT~v~~~t~nP~Wn-e~~~f~~~~~~~~~~~~~~~~~~l~v~V~d~d~~~~d~~i   89 (135)
T cd04017          19 SGLSDPFARVSFL--------NQSQETEVIKETLSPTWD-QTLIFDEVELYGSPEEIAQNPPLVVVELFDQDSVGKDEFL   89 (135)
T ss_pred             CCCCCCEEEEEEC--------CeeeEeeeEcCCCCCccC-cEEEEeeeeccCChHHhhcCCCEEEEEEEeCcCCCCCccc
Confidence            4568999999992        136789999999999999 999986   111   12  1246889999998543  33 


Q ss_pred             ceEEecCCccccccCccccCCCCCcccceeecC
Q 008661          257 GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVP  289 (558)
Q Consensus       257 Gv~v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~  289 (558)
                      |-....|......-|      ++.+.+|||.+-
T Consensus        90 G~~~i~~~~~~~~~~------~~~~~~~W~~L~  116 (135)
T cd04017          90 GRSVAKPLVKLDLEE------DFPPKLQWFPIY  116 (135)
T ss_pred             eEEEeeeeeecccCC------CCCCCceEEEee
Confidence            543222332222112      788999999774

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangeme

>cd04026 C2_PKC_alpha_gamma C2 domain in Protein Kinase C (PKC) alpha and gamma

Probab=98.20  E-value=6.6e-06  Score=74.36  Aligned_cols=61  Identities=13%  Similarity=0.096  Sum_probs=46.5

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      +..||||++.+...   +....++||.++++++||.|| |.|.|..........+.++|||++..
T Consensus        32 ~~~dpyv~v~~~~~---~~~~~~~rT~v~~~~~~P~wn-e~f~~~~~~~~~~~~l~v~v~d~~~~   92 (131)
T cd04026          32 GLSDPYVKLKLIPD---PKNETKQKTKTIKKTLNPVWN-ETFTFDLKPADKDRRLSIEVWDWDRT   92 (131)
T ss_pred             CCCCCcEEEEEEcC---CCCCceecceeecCCCCCCcc-ceEEEeCCchhcCCEEEEEEEECCCC
Confidence            45899999999432   223456899999999999999 99999833332456799999998743

A single C2 domain is found in PKC alpha and gamma. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1(alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transd

>cd04048 C2A_Copine C2 domain first repeat in Copine

Probab=98.18  E-value=2.8e-06  Score=75.88  Aligned_cols=61  Identities=11%  Similarity=0.081  Sum_probs=46.8

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG  252 (558)
                      .+.+|||+++++.... .++...++||.++++++||+|| |.|.|. ..+..  ..+.++|||++.
T Consensus        18 ~g~~DPyv~v~~~~~~-~~~~~~~~kT~vi~~t~nP~wn-e~f~f~~~~~~~--~~l~~~V~d~d~   79 (120)
T cd04048          18 LSKSDPFVVVYVKTGG-SGQWVEIGRTEVIKNNLNPDFV-TTFTVDYYFEEV--QKLRFEVYDVDS   79 (120)
T ss_pred             CCCCCcEEEEEEEcCC-CCceEEeccEeEeCCCCCCCce-EEEEEEEEeEee--eEEEEEEEEecC
Confidence            4568999999995431 1245677899999999999999 899997 33333  368899999874

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 doma

>cd04018 C2C_Ferlin C2 domain third repeat in Ferlin

Probab=98.18  E-value=3.6e-06  Score=79.52  Aligned_cols=83  Identities=11%  Similarity=0.088  Sum_probs=57.5

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc--ccc-ceE------
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIW------  259 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~--~e~-Gv~------  259 (558)
                      +.+||||++.+.     +   ++.||.++++++||+|| |.|.|..........+.++|||+|..  ++. |..      
T Consensus        33 ~~~DPYV~V~~~-----g---~~~kT~v~~~t~nPvWN-E~f~f~v~~p~~~~~l~~~v~D~d~~~~dd~iG~~~l~l~~  103 (151)
T cd04018          33 ELVDPYVEVSFA-----G---QKVKTSVKKNSYNPEWN-EQIVFPEMFPPLCERIKIQIRDWDRVGNDDVIGTHFIDLSK  103 (151)
T ss_pred             CCcCcEEEEEEC-----C---EeeecceEcCCCCCCcc-eEEEEEeeCCCcCCEEEEEEEECCCCCCCCEEEEEEEeHHH
Confidence            358999999982     2   24689999999999999 99999722222345789999999853  333 533      


Q ss_pred             EecCCcc-----ccccCccccCCCCC
Q 008661          260 VHQPGSE-----VAQTWEPRKGKNRR  280 (558)
Q Consensus       260 v~~pgt~-----~~~hW~~~l~~~r~  280 (558)
                      +...+.+     ..-||-.+.+.||.
T Consensus       104 l~~~~~~~~lp~~~p~W~~lyg~~~~  129 (151)
T cd04018         104 ISNSGDEGFLPTFGPSFVNLYGSPRE  129 (151)
T ss_pred             hccCCccccCCccCceEEEeecCccc
Confidence            2222222     12488888888876

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd08375 C2_Intersectin C2 domain present in Intersectin

Probab=98.16  E-value=1.1e-05  Score=74.37  Aligned_cols=71  Identities=15%  Similarity=0.133  Sum_probs=51.5

Q ss_pred             ceEEEEEEEEEecc---CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661          172 IGRLHLAITVLEES---AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI  248 (558)
Q Consensus       172 ~GeL~LsL~y~p~~---~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~  248 (558)
                      .|.|.+.+.--..-   ...+.+|||+++++..        .++||.++++++||+|| |.|.|.. ..+....+.++||
T Consensus        14 ~G~L~V~Vi~A~~L~~~d~~g~~DPYv~v~~~~--------~~~kT~vi~~t~nP~Wn-e~f~f~v-~~~~~~~l~i~V~   83 (136)
T cd08375          14 IGRLMVVIVEGRDLKPCNSNGKSDPYCEVSMGS--------QEHKTKVVSDTLNPKWN-SSMQFFV-KDLEQDVLCITVF   83 (136)
T ss_pred             cEEEEEEEEEeeCCCCCCCCCCcCcEEEEEECC--------EeeeccccCCCCCCccC-ceEEEEe-cCccCCEEEEEEE
Confidence            47766665432222   2245689999999921        35899999999999999 9999983 2344567899999


Q ss_pred             eccC
Q 008661          249 NIEG  252 (558)
Q Consensus       249 D~dG  252 (558)
                      |++.
T Consensus        84 D~d~   87 (136)
T cd08375          84 DRDF   87 (136)
T ss_pred             ECCC
Confidence            9884

A single instance of the C2 domain is located C terminally in the intersectin protein. Intersectin functions as a scaffolding protein, providing a link between the actin cytoskeleton and the components of endocytosis and plays a role in signal transduction. In addition to C2, intersectin contains several additional domains including: Eps15 homology domains, SH3 domains, a RhoGEF domain, and a PH domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking pro

>cd08688 C2_KIAA0528-like C2 domain found in the Human KIAA0528 cDNA clone

Probab=98.12  E-value=3.6e-06  Score=74.24  Aligned_cols=55  Identities=9%  Similarity=0.037  Sum_probs=46.8

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCcc-CCCceeec-CCCCCCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSV-SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvw-N~E~F~Fe-p~e~l~~v~leveV~D~dG  252 (558)
                      +.+|||+++++.     +   .++||.++++++||+| | |.|.|. +..++....+.++|||++.
T Consensus        19 ~~~Dpyv~v~~~-----~---~~~kT~v~~~~~nP~W~n-e~f~f~i~~~~l~~~~l~i~V~d~d~   75 (110)
T cd08688          19 DLTDAFVEVKFG-----S---TTYKTDVVKKSLNPVWNS-EWFRFEVDDEELQDEPLQIRVMDHDT   75 (110)
T ss_pred             CCCCceEEEEEC-----C---eeEecceecCCCCCcccC-cEEEEEcChHHcCCCeEEEEEEeCCC
Confidence            458999999992     1   6789999999999999 8 999999 6666677899999999884

The members of this CD are named after the Human KIAA0528 cDNA clone. All members here contain a single C2 repeat. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/a

>cd08675 C2B_RasGAP C2 domain second repeat of Ras GTPase activating proteins (GAPs)

Probab=98.10  E-value=1.4e-05  Score=73.88  Aligned_cols=102  Identities=18%  Similarity=0.120  Sum_probs=66.0

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CC-------------CCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SS-------------EKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~-------------e~l~~v~leveV~D~dG~  253 (558)
                      .+..||||++++...    ....++||.++++++||+|| |.|.|. ..             +.+....+.++|||++..
T Consensus        16 ~g~~dPyv~v~~~~~----~~~~~~rT~vv~~t~nP~Wn-e~f~f~~~~~~~~~~~~~~~~~~~~~~~~l~i~V~d~~~~   90 (137)
T cd08675          16 NGTCDPFARVTLNYS----SKTDTKRTKVKKKTNNPRFD-EAFYFELTIGFSYEKKSFKVEEEDLEKSELRVELWHASMV   90 (137)
T ss_pred             CCCCCcEEEEEEecC----CcCCeeccceeeCCCCCCcc-eEEEEEccccccccccccccccccccccEEEEEEEcCCcC
Confidence            345899999999432    22356899999999999999 999999 22             244778899999998854


Q ss_pred             --ccc-ceEEecCCccccccCccccCCCCCcccceeecCCCCccCCCCCCCCCC
Q 008661          254 --QET-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSL  304 (558)
Q Consensus       254 --~e~-Gv~v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~~~~~~~~~~~~~~~  304 (558)
                        ++- |.... +-.+..         .+.+..+|+.+......-.+++..|||
T Consensus        91 ~~~~~IG~~~i-~l~~l~---------~~~~~~~W~~L~~~~~~~~~~~~~~~~  134 (137)
T cd08675          91 SGDDFLGEVRI-PLQGLQ---------QAGSHQAWYFLQPREAPGTRSSNDGSL  134 (137)
T ss_pred             cCCcEEEEEEE-ehhhcc---------CCCcccceEecCCcCCCCCCccccCCC
Confidence              332 44321 222221         345668888777553322333444444

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin

>KOG1326 consensus Membrane-associated protein FER-1 and related ferlins, contain multiple C2 domains [Cell wall/membrane/envelope biogenesis]

Probab=98.09  E-value=3e-06  Score=97.76  Aligned_cols=188  Identities=17%  Similarity=0.137  Sum_probs=128.3

Q ss_pred             ceeEeeecC-CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEee---ccC-----C
Q 008661           55 NWFSVDVKE-PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI---STW-----D  125 (558)
Q Consensus        55 l~fSL~Yd~-~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V---~~~-----e  125 (558)
                      ..||..|.. ....|+++|.+|+.|.+.+..+.+|||+.+.+..+...|.++.+|+||.|+.+..|.-   ...     .
T Consensus       194 p~~Sc~~~e~~~~~lR~yiyQar~L~a~dk~~~sdp~a~v~f~~qs~~T~~v~~tl~ptwdq~~~f~~~ei~ge~~~~~~  273 (1105)
T KOG1326|consen  194 PEFSCYLSEVIHSPLRSYIYQARALGAPDKDDESDPDAAVEFCGQSKETEVVPGTLNPTWDQTIIFDEVEIYGEAHLVLK  273 (1105)
T ss_pred             CceEEecchhhhhhhHHHHHHHHhhcCCCcccCCCchhhhhcccccceeEeecCcCCCCccceeeccceeecCccchhhc
Confidence            346665544 4567899999999999999999999999999999999999999999999999988842   210     1


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC--CceEEEEEE--------------------EEE
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI--KIGRLHLAI--------------------TVL  182 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k--~~GeL~LsL--------------------~y~  182 (558)
                      ....+.|+|||.++.+ ++|+|.+.....-... .+.-.|+++...  -.|++.++.                    ..+
T Consensus       274 ~ppi~v~e~yd~dr~g~~ef~gr~~~~p~V~~~-~p~lkw~p~~rg~~l~gd~l~a~eliq~~~~i~~p~~~~~~~~~~v  352 (1105)
T KOG1326|consen  274 NPPIRVFEVYDLDRSGINEFKGRKKQRPYVMVQ-CPALKWVPTMRGAFLDGDVLIAAELIQIGKPIPQPPPQREIIFSLV  352 (1105)
T ss_pred             CCCeEEEEeehhhhhchHHhhcccccceEEEec-CCccceEEeecccccccchhHHHHHHhhcCCCCCCCcccccceecc
Confidence            2347899999999998 9999997665442222 455667777432  123333222                    122


Q ss_pred             eccCC--------------------CCC---CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec----CC
Q 008661          183 EESAK--------------------QGV---DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV----SS  235 (558)
Q Consensus       183 p~~~~--------------------l~l---sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe----p~  235 (558)
                      |...+                    .++   ..|-+.+.+     ++.++.  .-.+....-||.|+ ..|.+-    |.
T Consensus       353 p~~iRp~~q~~~~evl~wgLrn~k~~~m~~~~~P~~~~e~-----g~e~v~--s~~I~~~k~npnf~-s~~~~~~v~lpd  424 (1105)
T KOG1326|consen  353 PKKIRPKTQIGKAELLMWGLRNPKKSGMASTFSPALLVEF-----GGERVS--SFSIFNRKKNPNFP-SRVLGRLVILPD  424 (1105)
T ss_pred             ccCCCcceeeeeeehhhhhhcccccccccccCCcceeEee-----CCceEe--eeeehhhhhCCCCc-eeEEEEEEeccc
Confidence            22211                    111   234333333     344443  34445555788888 676554    88


Q ss_pred             CCCCCCceEEEEEecc
Q 008661          236 EKSPKVADNFEPINIE  251 (558)
Q Consensus       236 e~l~~v~leveV~D~d  251 (558)
                      +++..-.+.+.|+|.+
T Consensus       425 ~e~Y~ppl~akvvd~~  440 (1105)
T KOG1326|consen  425 EELYMPPLNAKVVDLR  440 (1105)
T ss_pred             hHhhCccceeEEEecc
Confidence            8888889999999876

>cd04050 C2B_Synaptotagmin-like C2 domain second repeat present in Synaptotagmin-like proteins

Probab=98.08  E-value=1.2e-05  Score=70.34  Aligned_cols=55  Identities=15%  Similarity=0.125  Sum_probs=43.9

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      .+.+|||+++.+.     +   +++||.++++++||+|| |.|.|... ......+.++|+|.+.
T Consensus        18 ~~~~dpyv~v~~~-----~---~~~kT~v~~~t~nP~Wn-e~f~f~v~-~~~~~~l~v~v~d~~~   72 (105)
T cd04050          18 TKEPSPYVELTVG-----K---TTQKSKVKERTNNPVWE-EGFTFLVR-NPENQELEIEVKDDKT   72 (105)
T ss_pred             CCCCCcEEEEEEC-----C---EEEeCccccCCCCCccc-ceEEEEeC-CCCCCEEEEEEEECCC
Confidence            4568999999992     2   57889999999999999 99999922 2233468999999877

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd04015 C2_plant_PLD C2 domain present in plant phospholipase D (PLD)

Probab=98.08  E-value=1.7e-05  Score=75.08  Aligned_cols=84  Identities=15%  Similarity=0.142  Sum_probs=54.9

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC--ccccceE-E--ec
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQETGIW-V--HQ  262 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG--~~e~Gv~-v--~~  262 (558)
                      .+.+||||++.+...       +..||.++++++||+|| |.|.|.....  ...+.|+|+|++.  .+.-|.. +  ..
T Consensus        55 ~g~sDPYv~V~l~~~-------~~~rT~v~~~~~nP~Wn-E~F~~~~~~~--~~~l~~~V~d~d~~~~~~IG~~~i~l~~  124 (158)
T cd04015          55 KITSDPYATVDLAGA-------RVARTRVIENSENPVWN-ESFHIYCAHY--ASHVEFTVKDNDVVGAQLIGRAYIPVED  124 (158)
T ss_pred             CCCcCeEEEEEECCe-------EeeEEEEeCCCCCCccc-eEEEEEccCC--CCEEEEEEEeCCCcCCcEEEEEEEEhHH
Confidence            445899999999321       34689999999999999 9999972222  2468899999873  3222543 1  11


Q ss_pred             -CCccccccCccccCCCCCc
Q 008661          263 -PGSEVAQTWEPRKGKNRRL  281 (558)
Q Consensus       263 -pgt~~~~hW~~~l~~~r~~  281 (558)
                       ...+...+|-+.....++|
T Consensus       125 l~~g~~~~~w~~L~~~~~~~  144 (158)
T cd04015         125 LLSGEPVEGWLPILDSNGKP  144 (158)
T ss_pred             ccCCCCcceEEECcCCCCCC
Confidence             1222346788877655554

PLD hydrolyzes terminal phosphodiester bonds in diester glycerophospholipids resulting in the degradation of phospholipids. In vitro PLD transfers phosphatidic acid to primary alcohols. In plants PLD plays a role in germination, seedling growth, phosphatidylinositol metabolism, and changes in phospholipid composition. There is a single Ca(2+)/phospholipid-binding C2 domain in PLD. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins whic

>KOG1011 consensus Neurotransmitter release regulator, UNC-13 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=1.4e-05  Score=88.71  Aligned_cols=104  Identities=27%  Similarity=0.451  Sum_probs=88.4

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEe-CC------eEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEe
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQL-GP------YRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVR  135 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~L-gp------~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~  135 (558)
                      ...++|.|+.|.+|+-. ..|.--|||.+.+ ||      .++.|+++.++-.|.|||+|.|.+....  ..-.|.|+|-
T Consensus      1124 ehkvtvkvvaandlkwq-tsgmFrPFVEV~ivGP~lsDKKRK~~TKtKsnnWaPKyNEtF~f~Lg~e~~Pe~YEL~~~VK 1202 (1283)
T KOG1011|consen 1124 EHKVTVKVVAANDLKWQ-TSGMFRPFVEVHIVGPHLSDKKRKFSTKTKSNNWAPKYNETFHFFLGNEGGPEHYELQFCVK 1202 (1283)
T ss_pred             cceEEEEEEecccccch-hccccccceEEEEecCcccchhhhccccccCCCcCcccCceeEEEeccCCCCceEEEEEeeh
Confidence            34788999999999754 3677889999998 54      4678999999999999999999987533  2347999999


Q ss_pred             ecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          136 DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       136 D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      |+...+ |..+|-+.++|.++...+....|++|..
T Consensus      1203 DYCFAReDRvvGl~VlqL~~va~kGS~a~W~pLgr 1237 (1283)
T KOG1011|consen 1203 DYCFAREDRVVGLAVLQLRSVADKGSCACWVPLGR 1237 (1283)
T ss_pred             hheeecccceeeeeeeehhhHhhcCceeEeeeccc
Confidence            999888 8899999999999988888999999975

>cd08379 C2D_MCTP_PRT_plant C2 domain fourth repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.06  E-value=1.4e-05  Score=73.21  Aligned_cols=55  Identities=5%  Similarity=-0.043  Sum_probs=43.3

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+||||.+.+..        ++.||.++++++||+|| |.|.|...+.  ...+.|+|||++..
T Consensus        21 ~g~sDPYv~i~~g~--------~~~rTk~~~~~~nP~Wn-E~f~f~v~~~--~~~l~v~V~d~d~~   75 (126)
T cd08379          21 RGSTDAYCVAKYGP--------KWVRTRTVEDSSNPRWN-EQYTWPVYDP--CTVLTVGVFDNSQS   75 (126)
T ss_pred             CCCCCeeEEEEECC--------EEeEcCcccCCCCCcce-eEEEEEecCC--CCEEEEEEEECCCc
Confidence            35589999999821        35689999999999999 9999983332  23799999998863

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04047 C2B_Copine C2 domain second repeat in Copine

Probab=98.04  E-value=1.5e-05  Score=69.74  Aligned_cols=62  Identities=10%  Similarity=0.014  Sum_probs=45.9

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec---CCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV---SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe---p~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++..+  .++...++||.++++++||+||  .|.|.   .........+.++|||++..
T Consensus        18 ~~~~DPyv~v~~~~~--~~~~~~~~kT~vi~~t~nP~Wn--~f~~~~~~l~~~~~~~~l~~~V~d~d~~   82 (110)
T cd04047          18 FGKSDPFLEISRQSE--DGTWVLVYRTEVIKNTLNPVWK--PFTIPLQKLCNGDYDRPIKIEVYDYDSS   82 (110)
T ss_pred             CCCCCeeEEEEEECC--CCCEEEEEeeeEeccCCCCceE--EEEEEHHHhcCCCcCCEEEEEEEEeCCC
Confidence            456899999998432  2245677999999999999999  46665   22333367899999999843

There are 2 copies of the C2 domain present in copine, a protein involved in membrane trafficking, protein-protein interactions, and perhaps even cell division and growth. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 dom

>cd08401 C2A_RasA2_RasA3 C2 domain first repeat present in RasA2 and RasA3

Probab=98.02  E-value=8.7e-06  Score=73.48  Aligned_cols=55  Identities=7%  Similarity=-0.117  Sum_probs=43.5

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      +.+|||+++.+..       .+++||.++++|+||+|| |.|.|...+.  ...+.|.|||++..
T Consensus        20 g~sDpYv~v~l~~-------~~~~kT~v~~kt~~P~Wn-E~F~f~v~~~--~~~l~~~v~d~~~~   74 (121)
T cd08401          20 KMRDCYCTVNLDQ-------EEVFRTKTVEKSLCPFFG-EDFYFEIPRT--FRHLSFYIYDRDVL   74 (121)
T ss_pred             CCcCcEEEEEECC-------ccEEEeeEEECCCCCccC-CeEEEEcCCC--CCEEEEEEEECCCC
Confidence            3589999999922       135789999999999999 9999993332  35889999999854

RasA2 and RasA3 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA2 and RasA3 are both inositol 1,3,4,5-tetrakisphosphate-binding proteins and contain an N-terminal C2 domain, a Ras-GAP domain, a pleckstrin-homology (PH) domain which localizes it to the plasma membrane, and Bruton's Tyrosine Kinase (BTK) a zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular p

>cd04019 C2C_MCTP_PRT_plant C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=98.00  E-value=3e-05  Score=72.91  Aligned_cols=87  Identities=15%  Similarity=0.089  Sum_probs=56.7

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCC-CCCCccCCCceeecCCCCCCCCceEEEEEeccCc--ccc-ceEEecC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ--QET-GIWVHQP  263 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~-TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~--~e~-Gv~v~~p  263 (558)
                      .+.+||||++.+.     +   +++||.+.++ ++||+|| |.|.|...+ .....+.++|+|+++.  ++. |... -|
T Consensus        18 ~g~sDPYV~v~l~-----~---~~~kTk~~~~~t~nP~WN-E~F~f~v~~-~~~~~l~v~V~d~~~~~~dd~lG~v~-i~   86 (150)
T cd04019          18 NRVPEVFVKAQLG-----N---QVLRTRPSQTRNGNPSWN-EELMFVAAE-PFEDHLILSVEDRVGPNKDEPLGRAV-IP   86 (150)
T ss_pred             CCCCCeEEEEEEC-----C---EEeeeEeccCCCCCCccc-CcEEEEecC-ccCCeEEEEEEEecCCCCCCeEEEEE-EE
Confidence            4569999999992     2   4567777766 6999999 999998322 2235788999998864  333 5432 22


Q ss_pred             CccccccCccccCCCCCcccceeecCC
Q 008661          264 GSEVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       264 gt~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                      -..+..     ...++.+..+|+.+-+
T Consensus        87 L~~l~~-----~~~~~~~~~~W~~L~~  108 (150)
T cd04019          87 LNDIER-----RVDDRPVPSRWFSLER  108 (150)
T ss_pred             HHHCcc-----cCCCCccCCceEECcC
Confidence            222211     1245667888997763

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd08383 C2A_RasGAP C2 domain (first repeat) of Ras GTPase activating proteins (GAPs)

Probab=97.99  E-value=3.4e-05  Score=67.78  Aligned_cols=79  Identities=13%  Similarity=0.085  Sum_probs=54.1

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCcccc-ceE---E--e
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQET-GIW---V--H  261 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~~e~-Gv~---v--~  261 (558)
                      +.+|||+++.+..       .+++||.++++ +||+|| |.|.|. +..++....+.+.+||.++.... |+.   +  .
T Consensus        16 ~~~dpyv~v~~~~-------~~~~kT~~~~~-~~P~Wn-e~f~f~v~~~~~~~~~l~i~v~d~~~~~~~~~~g~v~l~~~   86 (117)
T cd08383          16 GTRDPYCTVSLDQ-------VEVARTKTVEK-LNPFWG-EEFVFDDPPPDVTFFTLSFYNKDKRSKDRDIVIGKVALSKL   86 (117)
T ss_pred             CCCCceEEEEECC-------EEeEecceEEC-CCCccc-ceEEEecCCccccEEEEEEEEEecccCCCeeEEEEEEecCc
Confidence            4589999999932       23468888888 999999 999999 65566667888888887754332 332   1  1


Q ss_pred             cCCccccccCccccCC
Q 008661          262 QPGSEVAQTWEPRKGK  277 (558)
Q Consensus       262 ~pgt~~~~hW~~~l~~  277 (558)
                      .. .+...+|-++..+
T Consensus        87 ~~-~~~~~~w~~L~~~  101 (117)
T cd08383          87 DL-GQGKDEWFPLTPV  101 (117)
T ss_pred             CC-CCcceeEEECccC
Confidence            11 2234677776544

RasGAPs suppress Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. The proteins here all contain either a single C2 domain or two tandem C2 domains, a Ras-GAP domain, and a pleckstrin homology (PH)-like domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2

>cd08378 C2B_MCTP_PRT_plant C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=97.98  E-value=1.8e-05  Score=71.36  Aligned_cols=54  Identities=9%  Similarity=0.046  Sum_probs=44.9

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+|||+++++..        .++||.++++++||+|| |.|.|. ...+....+.++|||.+..
T Consensus        16 ~~Dpyv~v~l~~--------~~~kT~v~~~t~nP~Wn-e~F~f~-~~~~~~~~L~~~v~d~d~~   69 (121)
T cd08378          16 SNDPVVEVKLGN--------YKGSTKAIERTSNPEWN-QVFAFS-KDRLQGSTLEVSVWDKDKA   69 (121)
T ss_pred             cCCCEEEEEECC--------ccccccccCCCCCCccc-eEEEEE-cCCCcCCEEEEEEEeCCCC
Confidence            589999999931        36799999999999999 999998 3445677899999999854

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphate

>cd04016 C2_Tollip C2 domain present in Toll-interacting protein (Tollip)

Probab=97.97  E-value=2.8e-05  Score=70.82  Aligned_cols=68  Identities=10%  Similarity=0.008  Sum_probs=46.9

Q ss_pred             eEEEEEEEEEeccCC--CCCCCCcceEEecccCCCCceeeEEEeEecCC-CCCCccCCCceeecCCCCCCCCceEEEEEe
Q 008661          173 GRLHLAITVLEESAK--QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPIN  249 (558)
Q Consensus       173 GeL~LsL~y~p~~~~--l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~-TlNPvwN~E~F~Fep~e~l~~v~leveV~D  249 (558)
                      |.|++.+.--.....  ++.+|||+++.+..        .+.||.+.++ ++||+|| |.|.|.....  ...+.|+|||
T Consensus         2 g~L~v~v~~Ak~l~~~~~g~sDPYv~i~lg~--------~~~kT~v~~~~~~nP~WN-e~F~f~v~~~--~~~l~~~V~d   70 (121)
T cd04016           2 GRLSITVVQAKLVKNYGLTRMDPYCRIRVGH--------AVYETPTAYNGAKNPRWN-KTIQCTLPEG--VDSIYIEIFD   70 (121)
T ss_pred             cEEEEEEEEccCCCcCCCCCCCceEEEEECC--------EEEEeEEccCCCCCCccC-eEEEEEecCC--CcEEEEEEEe
Confidence            555555543322211  45589999999922        3458888765 7999999 9999983222  2468999999


Q ss_pred             cc
Q 008661          250 IE  251 (558)
Q Consensus       250 ~d  251 (558)
                      .|
T Consensus        71 ~d   72 (121)
T cd04016          71 ER   72 (121)
T ss_pred             CC
Confidence            88

Tollip is a part of the Interleukin-1 receptor (IL-1R) signaling pathway. Tollip is proposed to link serine/threonine kinase IRAK to IL-1Rs as well as inhibiting phosphorylation of IRAK. There is a single C2 domain present in Tollip. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice varian

>cd04022 C2A_MCTP_PRT_plant C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP); plant subset

Probab=97.96  E-value=1.2e-05  Score=72.59  Aligned_cols=57  Identities=12%  Similarity=0.020  Sum_probs=45.6

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C-CCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S-SEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p-~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++..        .++||.++++++||+|| |.|.|. . ...+....+.++|||.+..
T Consensus        18 ~g~~dpyv~v~~~~--------~~~rT~v~~~t~nP~Wn-e~f~f~~~~~~~~~~~~l~~~V~d~~~~   76 (127)
T cd04022          18 QGSSSAYVELDFDG--------QKKRTRTKPKDLNPVWN-EKLVFNVSDPSRLSNLVLEVYVYNDRRS   76 (127)
T ss_pred             CCCcCcEEEEEECC--------EEecceeEcCCCCCccc-eEEEEEccCHHHccCCeEEEEEeeCCCC
Confidence            34589999999832        35789999999999999 999999 3 3345567899999998754

MCTPs are involved in Ca2+ signaling at the membrane. Plant-MCTPs are composed of a variable N-terminal sequence, four C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates

>cd04036 C2_cPLA2 C2 domain present in cytosolic PhosphoLipase A2 (cPLA2)

Probab=97.96  E-value=1.2e-05  Score=71.51  Aligned_cols=59  Identities=8%  Similarity=-0.035  Sum_probs=44.8

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+||||++++...     ...++||.++++++||+|| |.|.|..... ....+.|+|||++..
T Consensus        18 ~~~~Dpyv~v~~~~~-----~~~~~kT~vv~~t~nP~Wn-e~f~f~i~~~-~~~~l~v~v~d~d~~   76 (119)
T cd04036          18 LSTPDCYVELWLPTA-----SDEKKRTKTIKNSINPVWN-ETFEFRIQSQ-VKNVLELTVMDEDYV   76 (119)
T ss_pred             CCCCCcEEEEEEcCC-----CCccCccceecCCCCCccc-eEEEEEeCcc-cCCEEEEEEEECCCC
Confidence            355899999998321     1346799999999999999 9999982222 334689999998865

A single copy of the C2 domain is present in cPLA2 which releases arachidonic acid from membranes initiating the biosynthesis of potent inflammatory mediators such as prostaglandins, leukotrienes, and platelet-activating factor. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants o

>cd08678 C2_C21orf25-like C2 domain found in the Human chromosome 21 open reading frame 25 (C21orf25) protein

Probab=97.95  E-value=1.6e-05  Score=71.66  Aligned_cols=58  Identities=16%  Similarity=0.073  Sum_probs=45.3

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCcc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQ  254 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~  254 (558)
                      .+.+|||+++++.      ...+++||+++++|+||+|| |.|.|....  ....+.|+|||++...
T Consensus        15 ~g~~dpyv~v~~~------~~~~~~kT~v~~~t~nP~Wn-e~f~f~~~~--~~~~l~~~v~d~~~~~   72 (126)
T cd08678          15 AGSSNPYCVLEMD------EPPQKYQSSTQKNTSNPFWD-EHFLFELSP--NSKELLFEVYDNGKKS   72 (126)
T ss_pred             CCCcCCEEEEEEC------CCCcEEEeEEEecCCCCccC-ceEEEEeCC--CCCEEEEEEEECCCCC
Confidence            3468999999993      12346899999999999999 999998322  2457899999998653

The members in this cd are named after the Human C21orf25 which contains a single C2 domain. Several other members contain a C1 domain downstream of the C2 domain. No other information on this protein is currently known. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a

>cd04014 C2_PKC_epsilon C2 domain in Protein Kinase C (PKC) epsilon

Probab=97.94  E-value=6.5e-05  Score=68.20  Aligned_cols=76  Identities=8%  Similarity=0.069  Sum_probs=51.7

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC--cccc-ceE-Ee---
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG--QQET-GIW-VH---  261 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG--~~e~-Gv~-v~---  261 (558)
                      +..|||+++.+..     +  +..||.++++|+||.|| |.|.|...   ....+.|+|||.+.  ..+. |.+ +.   
T Consensus        33 g~~dpyv~v~~~~-----~--~~~kT~~~~~t~~P~Wn-e~f~~~v~---~~~~l~~~v~d~~~~~~~~~iG~~~i~l~~  101 (132)
T cd04014          33 QLLDPYVSIDVDD-----T--HIGKTSTKPKTNSPVWN-EEFTTEVH---NGRNLELTVFHDAAIGPDDFVANCTISFED  101 (132)
T ss_pred             cCcCcEEEEEECC-----E--EEeEEeEcCCCCCCCcc-eeEEEEcC---CCCEEEEEEEeCCCCCCCceEEEEEEEhHH
Confidence            3589999999932     2  33688899999999999 99999832   34678899998763  3333 544 21   


Q ss_pred             -cC-CccccccCcccc
Q 008661          262 -QP-GSEVAQTWEPRK  275 (558)
Q Consensus       262 -~p-gt~~~~hW~~~l  275 (558)
                       .. +.+....|-+..
T Consensus       102 l~~~~~~~~~~w~~L~  117 (132)
T cd04014         102 LIQRGSGSFDLWVDLE  117 (132)
T ss_pred             hcccCCCcccEEEEcc
Confidence             12 133346787664

A single C2 domain is found in PKC epsilon. The PKC family of serine/threonine kinases regulates apoptosis, proliferation, migration, motility, chemo-resistance, and differentiation. There are 3 groups: group 1 (alpha, betaI, beta II, gamma) which require phospholipids and calcium, group 2 (delta, epsilon, theta, eta) which do not require calcium for activation, and group 3 (xi, iota/lambda) which are atypical and can be activated in the absence of diacylglycerol and calcium. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1030 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=97.93  E-value=2.8e-05  Score=74.60  Aligned_cols=73  Identities=12%  Similarity=0.038  Sum_probs=51.4

Q ss_pred             eEEEEEEEEEeccCC--C-CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEe
Q 008661          173 GRLHLAITVLEESAK--Q-GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPIN  249 (558)
Q Consensus       173 GeL~LsL~y~p~~~~--l-~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D  249 (558)
                      |-|.+.+..-..-..  . +-+||||.+.+..        ++.||.+.++++||+|| |.|+|...+.  ...+.++|||
T Consensus         6 GLL~v~v~~g~~L~~rD~~~sSDPyVVl~lg~--------q~lkT~~v~~n~NPeWN-e~ltf~v~d~--~~~lkv~VyD   74 (168)
T KOG1030|consen    6 GLLRVRVKRGKNLAIRDFLGSSDPYVVLELGN--------QKLKTRVVYKNLNPEWN-EELTFTVKDP--NTPLKVTVYD   74 (168)
T ss_pred             eEEEEEEEeecCeeeeccccCCCCeEEEEECC--------eeeeeeeecCCCCCccc-ceEEEEecCC--CceEEEEEEe
Confidence            555555543322211  2 4499999999922        35778899999999999 9999984443  4678899999


Q ss_pred             ccCcccc
Q 008661          250 IEGQQET  256 (558)
Q Consensus       250 ~dG~~e~  256 (558)
                      +|.-...
T Consensus        75 ~D~fs~d   81 (168)
T KOG1030|consen   75 KDTFSSD   81 (168)
T ss_pred             CCCCCcc
Confidence            9954443

>cd08681 C2_fungal_Inn1p-like C2 domain found in fungal Ingression 1 (Inn1) proteins

Probab=97.91  E-value=3.2e-05  Score=68.42  Aligned_cols=56  Identities=9%  Similarity=-0.028  Sum_probs=41.7

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEec-CCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~Vk-K~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++.+..        .++||+++ +.++||+|| |.|.|..... ....+.++|||++..
T Consensus        19 ~~~~dpyv~v~~~~--------~~~kT~~~~~~~~nP~Wn-e~f~f~v~~~-~~~~l~i~v~d~~~~   75 (118)
T cd08681          19 LDKQDPYCVLRIGG--------VTKKTKTDFRGGQHPEWD-EELRFEITED-KKPILKVAVFDDDKR   75 (118)
T ss_pred             CCCCCceEEEEECC--------CccccccccCCCCCCccC-ceEEEEecCC-CCCEEEEEEEeCCCC
Confidence            44589999999932        34677776 458999999 9999992222 346789999998854

Saccharomyces cerevisiae Inn1 associates with the contractile actomyosin ring at the end of mitosis and is needed for cytokinesis. The C2 domain of Inn1, located at the N-terminus, is required for ingression of the plasma membrane. The C-terminus is relatively unstructured and contains eight PXXP motifs that are thought to mediate interaction of Inn1 with other proteins with SH3 domains in the cytokinesis proteins Hof1 (an F-BAR protein) and Cyk3 (whose overexpression can restore primary septum formation in Inn1Delta cells) as well as recruiting Inn1 to the bud-neck by binding to Cyk3. Inn1 and Cyk3 appear to cooperate in activating chitin synthase Chs2 for primary septum formation, which allows coordination of actomyosin ring contraction with ingression of the cleavage furrow. It is thought that the C2 domain of Inn1 helps to preserve the link between the actomyosin ring and the plasma membrane, contr

>cd08373 C2A_Ferlin C2 domain first repeat in Ferlin

Probab=97.91  E-value=2.3e-05  Score=70.60  Aligned_cols=57  Identities=14%  Similarity=0.089  Sum_probs=45.6

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++..        .++||.++++++||+|| |.|.|. .........+.++|||++..
T Consensus        12 ~g~~Dpyv~v~~~~--------~~~kT~v~~~~~nP~Wn-e~f~f~~~~~~~~~~~l~~~v~d~~~~   69 (127)
T cd08373          12 KGKGDRIAKVTFRG--------VKKKTRVLENELNPVWN-ETFEWPLAGSPDPDESLEIVVKDYEKV   69 (127)
T ss_pred             CCCCCCEEEEEECC--------EeeecceeCCCcCCccc-ceEEEEeCCCcCCCCEEEEEEEECCCC
Confidence            44589999999921        35799999999999999 999998 32225678899999999854

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04038 C2_ArfGAP C2 domain present in Arf GTPase Activating Proteins (GAP)

Probab=97.90  E-value=4.4e-05  Score=71.60  Aligned_cols=53  Identities=13%  Similarity=0.062  Sum_probs=43.2

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      +.+|||+++.+.        .+++||.++++++||+|| |.|.|...+.  ...+.++|||++.
T Consensus        20 ~~sDPYV~v~~g--------~~~~kT~vvk~t~nP~Wn-E~f~f~i~~~--~~~l~~~V~D~d~   72 (145)
T cd04038          20 TSSDPYVVLTLG--------NQKVKTRVIKKNLNPVWN-EELTLSVPNP--MAPLKLEVFDKDT   72 (145)
T ss_pred             CCcCcEEEEEEC--------CEEEEeeeEcCCCCCeec-ccEEEEecCC--CCEEEEEEEECCC
Confidence            458999999992        146899999999999999 8999993222  6678999999983

ArfGAP is a GTPase activating protein which regulates the ADP ribosylation factor Arf, a member of the Ras superfamily of GTP-binding proteins. The GTP-bound form of Arf is involved in Golgi morphology and is involved in recruiting coat proteins. ArfGAP is responsible for the GDP-bound form of Arf which is necessary for uncoating the membrane and allowing the Golgi to fuse with an acceptor compartment. These proteins contain an N-terminal ArfGAP domain containing the characteristic zinc finger motif (Cys-x2-Cys-x(16,17)-x2-Cys) and C-terminal C2 domain. C2 domains were first identified in Protein Kinase C (PKC). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances i

>cd08376 C2B_MCTP_PRT C2 domain second repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=97.89  E-value=2.4e-05  Score=69.00  Aligned_cols=56  Identities=13%  Similarity=0.051  Sum_probs=44.3

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++..        .++||.++++|+||+|| |.|.|...+ .....+.++|||++..
T Consensus        18 ~~~~dPyv~v~~~~--------~~~kT~v~~~t~nP~Wn-e~f~f~~~~-~~~~~l~v~v~d~~~~   73 (116)
T cd08376          18 NGLSDPYVKFRLGN--------EKYKSKVCSKTLNPQWL-EQFDLHLFD-DQSQILEIEVWDKDTG   73 (116)
T ss_pred             CCCCCcEEEEEECC--------EeEecccccCCCCCcee-EEEEEEecC-CCCCEEEEEEEECCCC
Confidence            35589999999921        45789999999999999 899998322 2456889999998853

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protei

>cd08400 C2_Ras_p21A1 C2 domain present in RAS p21 protein activator 1 (RasA1)

Probab=97.88  E-value=0.00011  Score=66.50  Aligned_cols=67  Identities=15%  Similarity=0.044  Sum_probs=43.6

Q ss_pred             EEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661          175 LHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       175 L~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG  252 (558)
                      |.+.+.--..-...+.+|||+++.+..       .+++||.++ +++||+|| |.|.|. ....+  ..+.+.|||++.
T Consensus         6 L~V~Vi~A~~L~~~~~~DPYv~v~l~~-------~~~~kT~v~-~~~nP~Wn-E~f~f~~~~~~~--~~l~v~v~d~~~   73 (126)
T cd08400           6 LQLNVLEAHKLPVKHVPHPYCVISLNE-------VKVARTKVR-EGPNPVWS-EEFVFDDLPPDV--NSFTISLSNKAK   73 (126)
T ss_pred             EEEEEEEeeCCCCCCCCCeeEEEEECC-------EeEEEeecC-CCCCCccC-CEEEEecCCCCc--CEEEEEEEECCC
Confidence            444443332222344589999999922       234678874 68999999 999997 32222  356788898873

RasA1 is a GAP1 (GTPase activating protein 1), a Ras-specific GAP member, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. RasA1 contains a C2 domain, a Ras-GAP domain, a pleckstrin homology (PH)-like domain, a SH3 domain, and 2 SH2 domains. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficki

>cd08382 C2_Smurf-like C2 domain present in Smad ubiquitination-related factor (Smurf)-like proteins

Probab=97.86  E-value=4.3e-05  Score=68.83  Aligned_cols=55  Identities=9%  Similarity=0.070  Sum_probs=44.1

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||++++++.       ..++||.++++++||+|| |.|.|....   ...+.++|||++..
T Consensus        18 ~~~~dpyv~v~~~~-------~~~~kT~v~~~t~nP~Wn-e~f~~~~~~---~~~l~i~V~d~~~~   72 (123)
T cd08382          18 FRLPDPFAVITVDG-------GQTHSTDVAKKTLDPKWN-EHFDLTVGP---SSIITIQVFDQKKF   72 (123)
T ss_pred             CCCCCcEEEEEECC-------ccceEccEEcCCCCCccc-ceEEEEeCC---CCEEEEEEEECCCC
Confidence            34589999999932       345799999999999999 999999322   56899999998743

A single C2 domain is found in Smurf proteins, C2-WW-HECT-domain E3s, which play an important role in the downregulation of the TGF-beta signaling pathway. Smurf proteins also regulate cell shape, motility, and polarity by degrading small guanosine triphosphatases (GTPases). C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are

>cd08391 C2A_C2C_Synaptotagmin_like C2 domain first and third repeat in Synaptotagmin-like proteins

Probab=97.85  E-value=6e-05  Score=66.54  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=43.7

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      +.+|||+++.+.     +   +++||.++++++||+|| |.|.|.. .......+.++|||++..
T Consensus        26 g~~dPyv~v~~~-----~---~~~kT~~~~~t~~P~W~-e~f~~~v-~~~~~~~l~i~v~d~~~~   80 (121)
T cd08391          26 GKSDPYVIVRVG-----A---QTFKSKVIKENLNPKWN-EVYEAVV-DEVPGQELEIELFDEDPD   80 (121)
T ss_pred             CCcCCEEEEEEC-----C---EeEEccccCCCCCCccc-ceEEEEe-CCCCCCEEEEEEEecCCC
Confidence            458999999992     1   56899999999999999 8899882 222456889999998754

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular

>cd04024 C2A_Synaptotagmin-like C2 domain first repeat present in Synaptotagmin-like proteins

Probab=97.84  E-value=6.6e-05  Score=67.04  Aligned_cols=56  Identities=9%  Similarity=-0.108  Sum_probs=44.4

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++.+..        .++||.++++++||+|| |.|.|...+ .....+.++|||++..
T Consensus        21 ~~~~dPyv~v~~~~--------~~~kT~~~~~t~~P~Wn-e~f~~~~~~-~~~~~l~i~v~d~~~~   76 (128)
T cd04024          21 KGKSDPYAILSVGA--------QRFKTQTIPNTLNPKWN-YWCEFPIFS-AQNQLLKLILWDKDRF   76 (128)
T ss_pred             CCCcCCeEEEEECC--------EEEecceecCCcCCccC-CcEEEEecC-CCCCEEEEEEEECCCC
Confidence            45689999999821        35799999999999999 899998322 4456899999998854

Synaptotagmin is a membrane-trafficking protein characterized by a N-terminal transmembrane region, a linker, and 2 C-terminal C2 domains. Previously all synaptotagmins were thought to be calcium sensors in the regulation of neurotransmitter release and hormone secretion, but it has been shown that not all of them bind calcium. Of the 17 identified synaptotagmins only 8 bind calcium (1-3, 5-7, 9, 10). The function of the two C2 domains that bind calcium are: regulating the fusion step of synaptic vesicle exocytosis (C2A) and binding to phosphatidyl-inositol-3,4,5-triphosphate (PIP3) in the absence of calcium ions and to phosphatidylinositol bisphosphate (PIP2) in their presence (C2B). C2B also regulates also the recycling step of synaptic vesicles. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permu

>cd04042 C2A_MCTP_PRT C2 domain first repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=97.83  E-value=4.5e-05  Score=68.12  Aligned_cols=56  Identities=11%  Similarity=0.008  Sum_probs=43.9

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++.+.     +  ...+||.++++++||+|| |.|.|... .+ ...+.++|||++..
T Consensus        18 ~g~~Dpyv~v~~~-----~--~~~~kT~~~~~t~nP~Wn-e~f~f~v~-~~-~~~l~~~v~D~d~~   73 (121)
T cd04042          18 GGTSDPYVKFKYG-----G--KTVYKSKTIYKNLNPVWD-EKFTLPIE-DV-TQPLYIKVFDYDRG   73 (121)
T ss_pred             CCCCCCeEEEEEC-----C--EEEEEeeeccCCCCCccc-eeEEEEec-CC-CCeEEEEEEeCCCC
Confidence            3568999999983     2  245789999999999999 99999832 22 35799999999854

MCTPs are involved in Ca2+ signaling at the membrane. MCTP is composed of a variable N-terminal sequence, three C2 domains, two transmembrane regions (TMRs), and a short C-terminal sequence. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular protein

>cd04054 C2A_Rasal1_RasA4 C2 domain first repeat present in RasA1 and RasA4

Probab=97.79  E-value=0.00011  Score=66.06  Aligned_cols=55  Identities=9%  Similarity=-0.028  Sum_probs=42.2

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      .+.+|||+++.+.     ++  ...||.++++++||+|| |.|.|.....  ...+.|+|||++.
T Consensus        18 ~g~~DPYv~v~~~-----~~--~~~kT~v~~~t~nP~Wn-e~f~~~~~~~--~~~l~v~v~d~~~   72 (121)
T cd04054          18 TGSSDPYCIVKVD-----NE--VIIRTATVWKTLNPFWG-EEYTVHLPPG--FHTVSFYVLDEDT   72 (121)
T ss_pred             CCCCCceEEEEEC-----CE--eeeeeeeEcCCCCCccc-ceEEEeeCCC--CCEEEEEEEECCC
Confidence            4458999999982     22  34689999999999999 9999983222  2578899999874

Rasal1 and RasA4 are both members of GAP1 (GTPase activating protein 1). Rasal1 responds to repetitive Ca2+ signals by associating with the plasma membrane and deactivating Ras. RasA4 suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both of these proteins contains two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins.

>PLN02964 phosphatidylserine decarboxylase

Probab=97.79  E-value=2e-05  Score=89.51  Aligned_cols=92  Identities=21%  Similarity=0.373  Sum_probs=76.2

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcE-EEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC
Q 008661           62 KEPVAYARVEVVEASDMKPSDLNGLADPY-VKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF  140 (558)
Q Consensus        62 d~~~G~L~VtVieArdL~~~D~~G~sDPY-VkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~  140 (558)
                      +.=.|.+.++|++|+    |+   ..||| +.+.+|.+.++|.+.++|+||+||+...|.+.+.+ ....+|.|||.+++
T Consensus        50 ~~~~~~~~~~~~~~~----~~---~~~~~~~~~~~g~~~f~t~~~~~~~~p~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  121 (644)
T PLN02964         50 EDFSGIALLTLVGAE----MK---FKDKWLACVSFGEQTFRTETSDSTDKPVWNSEKKLLLEKNG-PHLARISVFETNRL  121 (644)
T ss_pred             ccccCeEEEEeehhh----hc---cCCcEEEEEEecceeeeeccccccCCcccchhhceEeccCC-cceEEEEEEecCCC
Confidence            444689999999996    33   35886 55677889999999999999999999999998643 44579999999999


Q ss_pred             C-CCccEEEEEecccccCCCce
Q 008661          141 V-DDTLGDCTINISDLRDGQRH  161 (558)
Q Consensus       141 s-DDfIGev~IpL~eL~~~~~~  161 (558)
                      + ++++|.|.++|.++...+..
T Consensus       122 s~n~lv~~~e~~~t~f~~kqi~  143 (644)
T PLN02964        122 SKNTLVGYCELDLFDFVTQEPE  143 (644)
T ss_pred             CHHHhhhheeecHhhccHHHHH
Confidence            9 99999999999888765543

>cd04025 C2B_RasA1_RasA4 C2 domain second repeat present in RasA1 and RasA4

Probab=97.77  E-value=6.5e-05  Score=67.17  Aligned_cols=54  Identities=13%  Similarity=0.028  Sum_probs=42.6

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      +.+|||+++++..        .++||.++++++||+|| |.|.|.... .....+.|+|||++.
T Consensus        19 ~~~DPyv~v~~~~--------~~~kT~v~~~t~nP~Wn-e~f~f~~~~-~~~~~l~~~v~d~~~   72 (123)
T cd04025          19 GTSDPFVRVFYNG--------QTLETSVVKKSCYPRWN-EVFEFELME-GADSPLSVEVWDWDL   72 (123)
T ss_pred             CCcCceEEEEECC--------EEEeceeecCCCCCccC-cEEEEEcCC-CCCCEEEEEEEECCC
Confidence            4589999999821        34789999999999999 999998222 225678999999874

RasA1 and RasA4 are GAP1s (GTPase activating protein 1s ), Ras-specific GAP members, which suppresses Ras function by enhancing the GTPase activity of Ras proteins resulting in the inactive GDP-bound form of Ras. In this way it can control cellular proliferation and differentiation. Both proteins contain two C2 domains, a Ras-GAP domain, a plextrin homology (PH)-like domain, and a Bruton's Tyrosine Kinase (BTK) zinc binding domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such a

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=97.76  E-value=2.5e-05  Score=67.97  Aligned_cols=95  Identities=20%  Similarity=0.420  Sum_probs=71.2

Q ss_pred             EEEEEEecCCCCCCC-CCCCCcEEEEEe---CCeEEEeeeecCCCCCccceEEEEeeccCCC-CceEEEEEeecCCCC-C
Q 008661           69 RVEVVEASDMKPSDL-NGLADPYVKGQL---GPYRFRTKTQRKTLSPKWHEEFNIPISTWDS-PNVLVIEVRDKDHFV-D  142 (558)
Q Consensus        69 ~VtVieArdL~~~D~-~G~sDPYVkV~L---gp~k~KTkVikkTlNPvWnEtF~F~V~~~e~-~~tL~V~V~D~D~~s-D  142 (558)
                      -|+|+.|++|.-... ...+--|++--+   .+-.+||.+.+...||+|+|+|.|.+..++. .-+|.|.|+.  ... .
T Consensus         2 witv~~c~d~s~~~~~~e~~~i~ikg~~tl~kpv~~KsS~rrgs~d~~f~ETFVFqi~l~qL~~V~L~fsv~~--~~~RK   79 (103)
T cd08684           2 WITVLKCKDLSWPSSCGENPTIYIKGILTLPKPVHFKSSAKEGSNDIEFMETFVFAIKLQNLQTVRLVFKIQT--QTPRK   79 (103)
T ss_pred             EEEEEEecccccccccCcCCeeEEEEEEecCCCccccchhhcCCCChhHHHHHHHHHHHhhccceEEEEEeec--cCCcc
Confidence            478999999964332 233455776655   2367899999999999999999999986553 3489999998  444 8


Q ss_pred             CccEEEEEecccccCCCceeeeee
Q 008661          143 DTLGDCTINISDLRDGQRHDMWIP  166 (558)
Q Consensus       143 DfIGev~IpL~eL~~~~~~e~W~~  166 (558)
                      ..||.|.+.|..+... ...+|.+
T Consensus        80 e~iG~~sL~l~s~gee-E~~HW~e  102 (103)
T cd08684          80 RTIGECSLSLRTLSTQ-ETDHWLE  102 (103)
T ss_pred             ceeeEEEeecccCCHH-Hhhhhhc
Confidence            8999999999987543 4566765

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>cd04052 C2B_Tricalbin-like C2 domain second repeat present in Tricalbin-like proteins

Probab=97.75  E-value=5.7e-05  Score=66.81  Aligned_cols=58  Identities=17%  Similarity=0.089  Sum_probs=44.1

Q ss_pred             CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          187 KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       187 ~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      ..+.+|||+++++..     +  ..+||.++++++||+|| |.|.|.. .......++|+|+|.+..
T Consensus         9 ~~G~~dPYv~v~v~~-----~--~~~kT~v~~~t~nP~Wn-e~f~f~v-~~~~~~~l~i~v~d~~~~   66 (111)
T cd04052           9 KTGLLSPYAELYLNG-----K--LVYTTRVKKKTNNPSWN-ASTEFLV-TDRRKSRVTVVVKDDRDR   66 (111)
T ss_pred             cCCCCCceEEEEECC-----E--EEEEEeeeccCCCCccC-CceEEEe-cCcCCCEEEEEEEECCCC
Confidence            356689999999922     1  34688888999999999 9999982 233456688999998754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04043 C2_Munc13_fungal C2 domain in Munc13 (mammalian uncoordinated) proteins; fungal group

Probab=97.75  E-value=7.7e-05  Score=66.77  Aligned_cols=59  Identities=10%  Similarity=-0.075  Sum_probs=44.6

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++..     ...+++||.++++++||+|| |.|.|..... ....+.|+|||++..
T Consensus        19 ~~~~Dpyv~v~~~~-----~~~~~~kT~~~~~t~~P~Wn-e~f~f~i~~~-~~~~L~i~v~d~d~~   77 (126)
T cd04043          19 NGLSDPYVTLVDTN-----GKRRIAKTRTIYDTLNPRWD-EEFELEVPAG-EPLWISATVWDRSFV   77 (126)
T ss_pred             CCCCCceEEEEECC-----CCeeeecccEecCCCCCccc-ceEEEEcCCC-CCCEEEEEEEECCCC
Confidence            34589999998732     22345799999999999999 9999993332 356788999998743

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synap

>cd04033 C2_NEDD4_NEDD4L C2 domain present in the Human neural precursor cell-expressed, developmentally down-regulated 4 (NEDD4) and NEDD4-like (NEDD4L/NEDD42)

Probab=97.75  E-value=7.3e-05  Score=67.53  Aligned_cols=62  Identities=18%  Similarity=0.093  Sum_probs=45.8

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++.... .+....++||.++++|+||+|| |.|.|.....  ...+.++|||++..
T Consensus        18 ~~~~Dpyv~v~~~~~~-~~~~~~~~kT~v~~~t~nP~Wn-e~f~f~~~~~--~~~l~~~v~d~~~~   79 (133)
T cd04033          18 FGASDPYVKISLYDPD-GNGEIDSVQTKTIKKTLNPKWN-EEFFFRVNPR--EHRLLFEVFDENRL   79 (133)
T ss_pred             CCCcCcEEEEEEECCC-CCCcccceeeeEEcCCCCCcEe-eEEEEEEcCC--CCEEEEEEEECCCC
Confidence            4568999999995321 2234456799999999999999 9999982221  34688999998843

Nedd4 and Nedd4-2 are two of the nine members of the Human Nedd4 family. All vertebrates appear to have both Nedd4 and Nedd4-2 genes. They are thought to participate in the regulation of epithelial Na+ channel (ENaC) activity. They also have identical specificity for ubiquitin conjugating enzymes (E2). Nedd4 and Nedd4-2 are composed of a C2 domain, 2-4 WW domains, and a ubiquitin ligase Hect domain. Their WW domains can bind PPxY (PY) or LPSY motifs, and in vitro studies suggest that WW3 and WW4 of both proteins bind PY motifs in the key substrates, with WW3 generally exhibiting higher affinity. Most Nedd4 family members, especially Nedd4-2, also have multiple splice variants, which might play different roles in regulating their substrates. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04027 C2B_Munc13 C2 domain second repeat in Munc13 (mammalian uncoordinated) proteins

Probab=97.73  E-value=0.00015  Score=65.62  Aligned_cols=54  Identities=9%  Similarity=0.041  Sum_probs=41.8

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      .+.+|||+++++..        .++||.++++++||.|| |.|.|.....  ...+.++|||+|.
T Consensus        19 ~g~~DPyv~v~~~~--------~~~kT~~v~~t~~P~Wn-e~f~f~~~~~--~~~l~i~v~d~d~   72 (127)
T cd04027          19 TGTSDPYVTVQVGK--------TKKRTKTIPQNLNPVWN-EKFHFECHNS--SDRIKVRVWDEDD   72 (127)
T ss_pred             CCCcCcEEEEEECC--------EeeecceecCCCCCccc-eEEEEEecCC--CCEEEEEEEECCC
Confidence            45589999999821        35789999999999999 9999972222  3468999999873

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrev

>cd08676 C2A_Munc13-like C2 domain first repeat in Munc13 (mammalian uncoordinated)-like proteins

Probab=97.70  E-value=0.00012  Score=69.30  Aligned_cols=62  Identities=8%  Similarity=0.057  Sum_probs=45.2

Q ss_pred             CCCCCCcceEEecccCCCCc---------------------eeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEE
Q 008661          188 QGVDSPCDGGTLNKEGMGNK---------------------EDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFE  246 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~k---------------------rlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leve  246 (558)
                      .+.+|||+++.+........                     ....+||.++++++||+|| |.|.|.. ..+....+.|+
T Consensus        46 ~g~~DPyv~v~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kT~v~~~tlnP~Wn-E~F~f~v-~~~~~~~L~i~  123 (153)
T cd08676          46 NGFSDPYCMLGIVPASRERNSEKSKKRKSHRKKAVLKDTVPAKSIKVTEVKPQTLNPVWN-ETFRFEV-EDVSNDQLHLD  123 (153)
T ss_pred             CCCCCceEEEEEcccccccccccccccccccccccccccccccccEecceecCCCCCccc-cEEEEEe-ccCCCCEEEEE
Confidence            45699999999943211100                     0134789999999999999 9999983 33345789999


Q ss_pred             EEecc
Q 008661          247 PINIE  251 (558)
Q Consensus       247 V~D~d  251 (558)
                      |||++
T Consensus       124 V~D~d  128 (153)
T cd08676         124 IWDHD  128 (153)
T ss_pred             EEecC
Confidence            99987

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, sy

>cd04046 C2_Calpain C2 domain present in Calpain proteins

Probab=97.70  E-value=0.00013  Score=66.00  Aligned_cols=55  Identities=11%  Similarity=0.006  Sum_probs=43.3

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++.+..        ++.||.++++++||+|| |.|.|....  ....+.|+|||++..
T Consensus        21 ~g~~dPyv~v~~~~--------~~~kT~v~~~t~nP~Wn-e~f~f~~~~--~~~~l~i~V~d~~~~   75 (126)
T cd04046          21 GGGADPYVIIKCEG--------ESVRSPVQKDTLSPEFD-TQAIFYRKK--PRSPIKIQVWNSNLL   75 (126)
T ss_pred             CCCcCccEEEEECC--------EEEEeCccCCCCCCccc-ceEEEEecC--CCCEEEEEEEECCCC
Confidence            34589999998822        25799999999999999 899997322  256899999998743

A single C2 domain is found in calpains (EC 3.4.22.52, EC 3.4.22.53), calcium-dependent, non-lysosomal cysteine proteases. Caplains are classified as belonging to Clan CA by MEROPS and include six families: C1, C2, C10, C12, C28, and C47. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of pic

>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin

Probab=97.68  E-value=2.8e-05  Score=72.20  Aligned_cols=57  Identities=12%  Similarity=0.032  Sum_probs=49.2

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCC--CccCCCceeec-CC---------------------CCCCCCceEE
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFAN--ETTDKGSFSSV-SS---------------------EKSPKVADNF  245 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlN--PvwN~E~F~Fe-p~---------------------e~l~~v~lev  245 (558)
                      ++|||||++|.+.     ...++||.|+.+++|  |+|| +.|.|. +.                     +.+....+.+
T Consensus        24 ~sD~yVK~~L~~~-----~~~kqkTDVHyrslnG~~~FN-wRfvF~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~L~l   97 (133)
T cd08374          24 MSDIYVKGWLDGL-----EEDKQKTDVHYRSLDGEGNFN-WRFVFPFDYLPAEKKIVVIKKEHFWSLDETEYKIPPKLTL   97 (133)
T ss_pred             ccCeEEEEEEccC-----cccccccceEEecCCCCcEEe-EEEEEeeecCCccceeEEEeeccccccCcceEecCcEEEE
Confidence            4899999999543     577899999999999  9999 999988 44                     6678899999


Q ss_pred             EEEeccC
Q 008661          246 EPINIEG  252 (558)
Q Consensus       246 eV~D~dG  252 (558)
                      +|||+|.
T Consensus        98 qvwD~D~  104 (133)
T cd08374          98 QVWDNDK  104 (133)
T ss_pred             EEEECcc
Confidence            9999984

Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>cd04045 C2C_Tricalbin-like C2 domain third repeat present in Tricalbin-like proteins

Probab=97.67  E-value=0.00018  Score=64.82  Aligned_cols=56  Identities=13%  Similarity=-0.004  Sum_probs=42.8

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++.     +  ..++||.++++++||.|| |.|.|.....  ...+.|+|||++..
T Consensus        19 ~g~~DPYv~v~~~-----~--~~~~kT~~~~~t~~P~Wn-e~f~~~v~~~--~~~L~v~v~d~~~~   74 (120)
T cd04045          19 VGKIDPYVRVLVN-----G--IVKGRTVTISNTLNPVWD-EVLYVPVTSP--NQKITLEVMDYEKV   74 (120)
T ss_pred             CCCcCCEEEEEEC-----C--EEeeceeEECCCcCCccC-ceEEEEecCC--CCEEEEEEEECCCC
Confidence            3458999999992     1  256889999999999999 8888872222  24789999998743

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd04044 C2A_Tricalbin-like C2 domain first repeat present in Tricalbin-like proteins

Probab=97.67  E-value=0.00015  Score=64.34  Aligned_cols=55  Identities=7%  Similarity=0.070  Sum_probs=44.0

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+|||+++.+...      .+++||.++++++||+|| |.|.|...  .....+.++|||++..
T Consensus        23 ~~dpyv~v~~~~~------~~~~kT~~~~~~~~P~Wn-e~~~~~v~--~~~~~l~~~v~d~~~~   77 (124)
T cd04044          23 TVDPYVTFSISNR------RELARTKVKKDTSNPVWN-ETKYILVN--SLTEPLNLTVYDFNDK   77 (124)
T ss_pred             CCCCeEEEEECCC------CcceEeeeecCCCCCcce-EEEEEEeC--CCCCEEEEEEEecCCC
Confidence            4799999999431      356899999999999999 99999832  3356789999998754

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08377 C2C_MCTP_PRT C2 domain third repeat found in Multiple C2 domain and Transmembrane region Proteins (MCTP)

Probab=97.65  E-value=0.00019  Score=63.43  Aligned_cols=53  Identities=9%  Similarity=-0.066  Sum_probs=41.7

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      +.+|||+++++..        .+.||.++++++||.|| |.|.|...+ + ...+.++|||++.
T Consensus        20 ~~~dPyv~v~~~~--------~~~~T~~~~~t~nP~W~-e~f~~~~~~-~-~~~l~~~v~d~~~   72 (119)
T cd08377          20 GKSDPFCVLELVN--------ARLQTHTIYKTLNPEWN-KIFTFPIKD-I-HDVLEVTVYDEDK   72 (119)
T ss_pred             CCCCcEEEEEECC--------EeeecceecCCcCCccC-cEEEEEecC-c-CCEEEEEEEECCC
Confidence            4489999999932        23689999999999999 899998322 2 3578899999874

MCTPs are involved in Ca2+ signaling at the membrane. The cds in this family contain multiple C2 domains as well as a C-terminal PRT domain. It is one of four protein classes that are anchored to membranes via a transmembrane region; the others being synaptotagmins, extended synaptotagmins, and ferlins. MCTPs are the only membrane-bound C2 domain proteins that contain two functional TMRs. MCTPs are unique in that they bind Ca2+ but not phospholipids. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal tran

>cd08394 C2A_Munc13 C2 domain first repeat in Munc13 (mammalian uncoordinated) proteins

Probab=97.60  E-value=0.00041  Score=64.10  Aligned_cols=68  Identities=6%  Similarity=-0.119  Sum_probs=47.6

Q ss_pred             eEEEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          173 GRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       173 GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      |.|++++.--......+..+|||.+.+.      .  .|.||.+.++ .||.|| |.|.|...+ . ...+.++|||.+-
T Consensus         2 ~~L~V~Vv~Ar~L~~~~~~dPYV~Ik~g------~--~k~kT~v~~~-~nP~Wn-E~F~F~~~~-~-~~~L~v~V~dkd~   69 (127)
T cd08394           2 SLLCVLVKKAKLDGAPDKFNTYVTLKVQ------N--VKSTTIAVRG-SQPCWE-QDFMFEINR-L-DLGLVIELWNKGL   69 (127)
T ss_pred             ceEEEEEEEeeCCCCCCCCCCeEEEEEC------C--EEeEeeECCC-CCCcee-eEEEEEEcC-C-CCEEEEEEEeCCC
Confidence            4566666544443334446899999991      1  4578888887 499999 999998433 2 2339999999873

C2-like domains are thought to be involved in phospholipid binding in a Ca2+ independent manner in both Unc13 and Munc13. Caenorabditis elegans Unc13 has a central domain with sequence similarity to PKC, which includes C1 and C2-related domains. Unc13 binds phorbol esters and DAG with high affinity in a phospholipid manner. Mutations in Unc13 results in abnormal neuronal connections and impairment in cholinergic neurotransmission in the nematode. Munc13 is the mammalian homolog which are expressed in the brain. There are 3 isoforms (Munc13-1, -2, -3) and are thought to play a role in neurotransmitter release and are hypothesized to be high-affinity receptors for phorbol esters. Unc13 and Munc13 contain both C1 and C2 domains. There are two C2 related domains present, one central and one at the carboxyl end. Munc13-1 contains a third C2-like domain. Munc13 interacts with syntaxin, synaptobrevi

>cd04049 C2_putative_Elicitor-responsive_gene C2 domain present in the putative elicitor-responsive gene

Probab=97.59  E-value=0.00028  Score=63.19  Aligned_cols=55  Identities=11%  Similarity=0.009  Sum_probs=40.8

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeec-CCCC-CCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSV-SSEK-SPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fe-p~e~-l~~v~leveV~D~dG  252 (558)
                      +..|||+++.+..        .+++|.+.+ +++||.|| |.|.|. ...+ .....+.|+|||.+.
T Consensus        20 ~~~dpyv~v~~~~--------~~~~T~~~~~~t~nP~Wn-e~f~f~v~~~~~~~~~~l~v~V~d~~~   77 (124)
T cd04049          20 GKIDPYVIIQCRT--------QERKSKVAKGDGRNPEWN-EKFKFTVEYPGWGGDTKLILRIMDKDN   77 (124)
T ss_pred             CCcCceEEEEECC--------EeeeeeEcCCCCCCCccc-ceEEEEecCcccCCCCEEEEEEEECcc
Confidence            4589999999821        246777777 48999999 999998 3222 234678899999874

In plants elicitor-responsive proteins are triggered in response to specific elicitor molecules such as glycolproteins, peptides, carbohydrates and lipids. A host of defensive responses are also triggered resulting in localized cell death. Antimicrobial secondary metabolites, such as phytoalexins, or defense-related proteins, including pathogenesis-related (PR) proteins are also produced. There is a single C2 domain present here. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contai

>cd04021 C2_E3_ubiquitin_ligase C2 domain present in E3 ubiquitin ligase

Probab=97.46  E-value=0.00046  Score=62.46  Aligned_cols=55  Identities=13%  Similarity=0.178  Sum_probs=43.3

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+..|||+++++.     +.  .++||.++++++||+|| |.|.|...   ....+.|+|||++..
T Consensus        19 ~~~~dPyv~v~~~-----~~--~~~kT~v~~~t~~P~Wn-e~f~~~~~---~~~~l~~~V~d~~~~   73 (125)
T cd04021          19 SFKPDPYVEVTVD-----GQ--PPKKTEVSKKTSNPKWN-EHFTVLVT---PQSTLEFKVWSHHTL   73 (125)
T ss_pred             CCCCCeEEEEEEC-----Cc--ccEEeeeeCCCCCCccc-cEEEEEeC---CCCEEEEEEEeCCCC
Confidence            4458999999993     22  46899999999999999 89999822   235789999998754

E3 ubiquitin ligase is part of the ubiquitylation mechanism responsible for controlling surface expression of membrane proteins. The sequential action of several enzymes are involved: ubiquitin-activating enzyme E1, ubiquitin-conjugating enzyme E2, and ubiquitin-protein ligase E3 which is responsible for substrate recognition and promoting the transfer of ubiquitin to the target protein. E3 ubiquitin ligase is composed of an N-terminal C2 domain, 4 WW domains, and a HECTc domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction e

>cd04040 C2D_Tricalbin-like C2 domain fourth repeat present in Tricalbin-like proteins

Probab=97.43  E-value=0.00038  Score=61.21  Aligned_cols=57  Identities=16%  Similarity=0.107  Sum_probs=44.0

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+..|||+++.+..       .+.++|.++.+++||+|| |.|.|...+. ....+.+++||++..
T Consensus        17 ~~~~dpyv~v~~~~-------~~~~~T~v~~~~~~P~Wn-e~f~~~~~~~-~~~~l~~~v~d~~~~   73 (115)
T cd04040          17 NGKSDPFVKFYLNG-------EKVFKTKTIKKTLNPVWN-ESFEVPVPSR-VRAVLKVEVYDWDRG   73 (115)
T ss_pred             CCCCCCeEEEEECC-------CcceeeceecCCCCCccc-ccEEEEeccC-CCCEEEEEEEeCCCC
Confidence            34589999999932       244789999999999999 9999983222 456788999998743

5 to 6 copies of the C2 domain are present in Tricalbin, a yeast homolog of Synaptotagmin, which is involved in membrane trafficking and sorting. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain.

>cd08683 C2_C2cd3 C2 domain found in C2 calcium-dependent domain containing 3 (C2cd3) proteins

Probab=97.36  E-value=0.0002  Score=66.35  Aligned_cols=100  Identities=22%  Similarity=0.355  Sum_probs=74.7

Q ss_pred             EEEEEEEecCCCCCC-----------C--CCCCCcEEEEEe--CC--eEEEeeeecCCCCCccceEEEEeeccC------
Q 008661           68 ARVEVVEASDMKPSD-----------L--NGLADPYVKGQL--GP--YRFRTKTQRKTLSPKWHEEFNIPISTW------  124 (558)
Q Consensus        68 L~VtVieArdL~~~D-----------~--~G~sDPYVkV~L--gp--~k~KTkVikkTlNPvWnEtF~F~V~~~------  124 (558)
                      |.|.|++|.+|+...           .  .-.-++||++.+  .+  ...+|+++-++..|.|+..|+|.++-.      
T Consensus         1 lsv~I~RA~GLqaAA~~la~~~~~l~y~a~VGVN~yv~i~lSFl~~~e~r~TrtVArSFcPeF~Hh~Efpc~lv~~~~~G   80 (143)
T cd08683           1 LSVQIHRASGLQAAARALAEQDPSLQYSATVGVNSYVTIHLSFLPEKELRRTRTVARSFCPEFNHHVEFPCNLVVQRNSG   80 (143)
T ss_pred             CeEEeehhhhHHHHHHHHhhhCcccccceecccceEEEEEeccCCCCceeeccchhhhcCCCccceEEEecccEEEcCCC
Confidence            468899999997532           0  112589999996  33  678999999999999999999987610      


Q ss_pred             C--------CCceEEEEEeecCCC-----------CCCccEEEEEecccccCC-Cceeeeeec
Q 008661          125 D--------SPNVLVIEVRDKDHF-----------VDDTLGDCTINISDLRDG-QRHDMWIPL  167 (558)
Q Consensus       125 e--------~~~tL~V~V~D~D~~-----------sDDfIGev~IpL~eL~~~-~~~e~W~~L  167 (558)
                      +        ....+.|+||+...-           +|-+||.+.||+.+|... .....||++
T Consensus        81 e~~sLAElLe~~eiil~vwHr~~~s~~~~~~~~~~~DilLG~v~IPl~~Ll~~rsGitGW~pi  143 (143)
T cd08683          81 EAISLAELLESAEIILEVWHRNPKSAGDTIKIETSGDILLGTVKIPLRDLLTKRSGITGWYPI  143 (143)
T ss_pred             ccccHHHHhhcceEEeeeeecCCccccceeccCcCCcEEEEEEEeeHHHHhhcccCccccccC
Confidence            0        134689999997542           145899999999998654 457889975

C2cd3 is a novel C2 domain-containing protein specific to vertebrates. C2cd3 functions in regulator of cilia formation, Hedgehog signaling, and mouse embryonic development. Mutations in C2cd3 mice resulted in lethality in some cases and exencephaly, a twisted body axis, and pericardial edema in others. The presence of calcium-dependent lipid-binding domains in C2cd3 suggests a potential role in vesicular transport. C2cd3 is also an interesting candidate for ciliopathy because of its orthology to certain cilia-related genetic disease loci on chromosome. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances inc

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=97.32  E-value=0.00032  Score=88.05  Aligned_cols=72  Identities=10%  Similarity=0.008  Sum_probs=52.6

Q ss_pred             ceEEEEEEEEEecc-CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661          172 IGRLHLAITVLEES-AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI  250 (558)
Q Consensus       172 ~GeL~LsL~y~p~~-~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~  250 (558)
                      .|.|.+++.--..- +.++.+|||+++.+..       -.++||.+++++.||+|| |.|.|...+......+.++|||+
T Consensus      1979 ~G~L~V~V~~a~nl~~~~~~sdPyv~l~~g~-------~~~~kTkvvk~~~nP~Wn-e~f~~~~~~p~~~~~l~iev~d~ 2050 (2102)
T PLN03200       1979 PGSLTVTIKRGNNLKQSMGNTNAFCKLTLGN-------GPPRQTKVVSHSSSPEWK-EGFTWAFDSPPKGQKLHISCKSK 2050 (2102)
T ss_pred             CcceEEEEeeccccccccCCCCCeEEEEECC-------CCcccccccCCCCCCCcc-cceeeeecCCCCCCceEEEEEec
Confidence            47877776633222 3356689999999932       245799999999999999 88886622333445699999998


Q ss_pred             c
Q 008661          251 E  251 (558)
Q Consensus       251 d  251 (558)
                      |
T Consensus      2051 d 2051 (2102)
T PLN03200       2051 N 2051 (2102)
T ss_pred             C
Confidence            7

>PLN03008 Phospholipase D delta

Probab=97.27  E-value=0.00048  Score=80.01  Aligned_cols=89  Identities=12%  Similarity=0.097  Sum_probs=61.8

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCcccc--ceE-E----e
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQET--GIW-V----H  261 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e~--Gv~-v----~  261 (558)
                      ..+||||++.|..       .++.||.|+++++||+|| |.|.|....  ....+.|+|+|+|.-...  |.. +    .
T Consensus        75 ~tSDPYV~I~Lg~-------~rv~RTrVi~n~~NPvWN-E~F~f~vah--~~s~L~f~VkD~D~~gaD~IG~a~IPL~~L  144 (868)
T PLN03008         75 ITSDPYVTVVVPQ-------ATLARTRVLKNSQEPLWD-EKFNISIAH--PFAYLEFQVKDDDVFGAQIIGTAKIPVRDI  144 (868)
T ss_pred             CCCCceEEEEECC-------cceeeEEeCCCCCCCCcc-eeEEEEecC--CCceEEEEEEcCCccCCceeEEEEEEHHHc
Confidence            4489999999922       234589999999999999 999998222  245899999998844333  533 1    2


Q ss_pred             cCCccccccCccccCCCCCcc---cceeec
Q 008661          262 QPGSEVAQTWEPRKGKNRRLD---TLVRRV  288 (558)
Q Consensus       262 ~pgt~~~~hW~~~l~~~r~~~---~q~~~~  288 (558)
                      .+|.. ...|.+.+...++|.   +++|..
T Consensus       145 ~~Ge~-vd~Wl~Ll~~~~kp~k~~~kl~v~  173 (868)
T PLN03008        145 ASGER-ISGWFPVLGASGKPPKAETAIFID  173 (868)
T ss_pred             CCCCc-eEEEEEccccCCCCCCCCcEEEEE
Confidence            34433 368998877655544   677654

>cd00275 C2_PLC_like C2 domain present in Phosphoinositide-specific phospholipases C (PLC)

Probab=97.10  E-value=0.0011  Score=59.11  Aligned_cols=61  Identities=8%  Similarity=0.015  Sum_probs=44.8

Q ss_pred             CCCCCCcceEEecccCCCCc-eeeEEEeEecCCCC-CCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNK-EDQSNKEDIRESFA-NETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~k-rlkKKKT~VkK~Tl-NPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+..|||+++++...   .. ...++||.+.+++. ||.|| |.|.|... ......+.++|||.+..
T Consensus        22 ~~~~dpyv~v~l~~~---~~~~~~~~kT~~~~~~~~~P~w~-e~f~f~~~-~~~~~~l~~~V~d~~~~   84 (128)
T cd00275          22 GSIVDPYVEVEIHGL---PADDSAKFKTKVVKNNGFNPVWN-ETFEFDVT-VPELAFLRFVVYDEDSG   84 (128)
T ss_pred             CCccCCEEEEEEEeC---CCCCCCcEeeeeecCCCcCCccC-CcEEEEEe-CCCeEEEEEEEEeCCCC
Confidence            345899999999443   22 45678999887775 99999 99999922 22234688999998864

PLCs are involved in the hydrolysis of phosphatidylinositol-4,5-bisphosphate (PIP2) to d-myo-inositol-1,4,5-trisphosphate (1,4,5-IP3) and sn-1,2-diacylglycerol (DAG). 1,4,5-IP3 and DAG are second messengers in eukaryotic signal transduction cascades. PLC is composed of a N-terminal PH domain followed by a series of EF hands, a catalytic TIM barrel and a C-terminal C2 domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking

>KOG0905 consensus Phosphoinositide 3-kinase [Signal transduction mechanisms]

Probab=97.09  E-value=0.00038  Score=82.07  Aligned_cols=81  Identities=15%  Similarity=0.130  Sum_probs=66.5

Q ss_pred             ceEEEEEEEEEeccCC------CCC--------CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CC
Q 008661          172 IGRLHLAITVLEESAK------QGV--------DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SS  235 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~------l~l--------sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~  235 (558)
                      .|+|.|+|.|....-.      .++        +|||||.||.+   ..++..|+||.|..+|.||+|| |...+.  |.
T Consensus      1512 ggqV~LsIsY~~~~LtImV~H~K~L~~Lqdg~~P~pyVK~YLlP---dp~k~sKRKTKvvrkt~~PTfn-E~LvY~g~p~ 1587 (1639)
T KOG0905|consen 1512 GGQVKLSISYNNGTLTIMVMHAKGLALLQDGQDPDPYVKTYLLP---DPRKTSKRKTKVVRKTRNPTFN-EMLVYDGFPK 1587 (1639)
T ss_pred             CceEEEEEEEcCceEEEEhhhhcccccccCCCCCCcceeEEecC---CchHhhhhhhccccccCCCchh-hheeecCCch
Confidence            5799999999743311      111        78999999954   4777888999999999999999 888877  88


Q ss_pred             CCCCCCceEEEEEeccCcccc
Q 008661          236 EKSPKVADNFEPINIEGQQET  256 (558)
Q Consensus       236 e~l~~v~leveV~D~dG~~e~  256 (558)
                      +.++...++++||..+|..+.
T Consensus      1588 ~~l~qReLQ~sVls~~~~~en 1608 (1639)
T KOG0905|consen 1588 EILQQRELQVSVLSNGGLLEN 1608 (1639)
T ss_pred             hhhhhheeeeeeecccceeee
Confidence            999999999999998887665

>cd04051 C2_SRC2_like C2 domain present in Soybean genes Regulated by Cold 2 (SRC2)-like proteins

Probab=97.05  E-value=0.0017  Score=58.03  Aligned_cols=57  Identities=9%  Similarity=-0.046  Sum_probs=42.8

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeec-CCCC--CCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSV-SSEK--SPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fe-p~e~--l~~v~leveV~D~dG  252 (558)
                      .+..|||+++++..       ..++||.+.+ .+.||+|| |.|.|. +...  .....+.|+|||++.
T Consensus        18 ~~~~dpYv~v~~~~-------~~~~~T~~~~~~~~~P~Wn-e~f~f~v~~~~~~~~~~~l~~~v~d~~~   78 (125)
T cd04051          18 FGKMKVYAVVWIDP-------SHKQSTPVDRDGGTNPTWN-ETLRFPLDERLLQQGRLALTIEVYCERP   78 (125)
T ss_pred             ccCCceEEEEEECC-------CcccccccccCCCCCCCCC-CEEEEEcChHhcccCccEEEEEEEECCC
Confidence            34489999999933       2457888865 58999999 999999 3332  246789999999873

SRC2 production is a response to pathogen infiltration. The initial response of increased Ca2+ concentrations are coupled to downstream signal transduction pathways via calcium binding proteins. SRC2 contains a single C2 domain which localizes to the plasma membrane and is involved in Ca2+ dependent protein binding. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such

>PF00168 C2: C2 domain; InterPro: IPR000008 The C2 domain is a Ca2+-dependent membrane-targeting module found in many cellular proteins involved in signal transduction or membrane trafficking

Probab=97.01  E-value=0.001  Score=53.91  Aligned_cols=58  Identities=14%  Similarity=0.165  Sum_probs=44.9

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      .+..+||+++.+...   ..  .+++|.+++.+.||.|| +.|.|. .......  +.|+|||++..
T Consensus        17 ~~~~~~yv~v~~~~~---~~--~~~~T~~~~~~~~P~w~-e~~~~~~~~~~~~~--l~~~V~~~~~~   75 (85)
T PF00168_consen   17 NGKPDPYVRVSVNGS---ES--TKYKTKVKKNTSNPVWN-EEFEFPLDDPDLDS--LSFEVWDKDSF   75 (85)
T ss_dssp             TSSBEEEEEEEEETT---TC--EEEEECCBSSBSSEEEE-EEEEEEESHGCGTE--EEEEEEEETSS
T ss_pred             CCcccccceeeccee---ee--eeeeeeeeeccccceee-eeeeeeeecccccc--eEEEEEECCCC
Confidence            334789999999443   11  67899999999999999 999998 4444433  99999998743

C2 domains are unique among membrane targeting domains in that they show wide range of lipid selectivity for the major components of cell membranes, including phosphatidylserine and phosphatidylcholine. This C2 domain is about 116 amino-acid residues and is located between the two copies of the C1 domain in Protein Kinase C (that bind phorbol esters and diacylglycerol) (see PDOC00379 from PROSITEDOC) and the protein kinase catalytic domain (see PDOC00100 from PROSITEDOC). Regions with significant homology [] to the C2-domain have been found in many proteins. The C2 domain is thought to be involved in calcium-dependent phospholipid binding [] and in membrane targetting processes such as subcellular localisation. The 3D structure of the C2 domain of synaptotagmin has been reported [], the domain forms an eight-stranded beta sandwich constructed around a conserved 4-stranded motif, designated a C2 key []. Calcium binds in a cup-shaped depression formed by the N- and C-terminal loops of the C2-key motif. Structural analyses of several C2 domains have shown them to consist of similar ternary structures in which three Ca2+-binding loops are located at the end of an 8 stranded antiparallel beta sandwich. ; GO: 0005515 protein binding; PDB: 1RSY_A 1BYN_A 3NSJ_A 3QR1_D 3HN8_C 1DQV_A 3M7F_B 3KWU_A 3KWT_A 1V27_A ....

>KOG3837 consensus Uncharacterized conserved protein, contains DM14 and C2 domains [General function prediction only]

Probab=96.87  E-value=0.00096  Score=71.71  Aligned_cols=121  Identities=17%  Similarity=0.200  Sum_probs=93.6

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCccceEEEEeeccCC----------CC
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD----------SP  127 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg-----p~k~KTkVikkTlNPvWnEtF~F~V~~~e----------~~  127 (558)
                      .....|.+.|+++.+++........|-||++.+.     .++.+|.+++.|..|.|+|.|.+.+....          ..
T Consensus       364 l~d~elel~ivrg~~~pvp~gp~hld~fvr~efpl~nD~~qk~kt~vik~t~SPdfde~fklni~rg~~~nr~fqR~fkr  443 (523)
T KOG3837|consen  364 LKDQELELAIVRGQKNPVPGGPMHLDQFVRLEFPLENDSRQKLKTDVIKVTPSPDFDEDFKLNIRRGPGLNREFQRRFKR  443 (523)
T ss_pred             cchhHhHHHHhhcccCCCCCCchhHHhhhcccccccccccccCccceeeCCCCCCcccceeeeccCCCcccHHHHHHHHh
Confidence            3456677888999888754323346789988872     26779999999999999999999987522          12


Q ss_pred             ceEEEEEeecCCCC--CCccEEEEEecccccCCCceeeeeecCCC---CceEEEEEEEEEe
Q 008661          128 NVLVIEVRDKDHFV--DDTLGDCTINISDLRDGQRHDMWIPLQNI---KIGRLHLAITVLE  183 (558)
Q Consensus       128 ~tL~V~V~D~D~~s--DDfIGev~IpL~eL~~~~~~e~W~~L~~k---~~GeL~LsL~y~p  183 (558)
                      ..+.|++|....|-  |.++|.|.+.|..|...-.....++|.+.   ..|.|.+.++...
T Consensus       444 ~g~kfeifhkggf~rSdkl~gt~nikle~Len~cei~e~~~l~DGRK~vGGkLevKvRiR~  504 (523)
T KOG3837|consen  444 LGKKFEIFHKGGFNRSDKLTGTGNIKLEILENMCEICEYLPLKDGRKAVGGKLEVKVRIRQ  504 (523)
T ss_pred             cCeeEEEeeccccccccceeceeeeeehhhhcccchhhceeccccccccCCeeEEEEEEec
Confidence            36899999998774  89999999999988776667778888763   4688888887654

>KOG1327 consensus Copine [Signal transduction mechanisms]

Probab=96.67  E-value=0.0047  Score=68.77  Aligned_cols=90  Identities=26%  Similarity=0.429  Sum_probs=71.8

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeC--C----eEEEeeeecCCCCCccceEEEEeecc---CCCCceEEEEEeec
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLG--P----YRFRTKTQRKTLSPKWHEEFNIPIST---WDSPNVLVIEVRDK  137 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lg--p----~k~KTkVikkTlNPvWnEtF~F~V~~---~e~~~tL~V~V~D~  137 (558)
                      ....-.++|++|..+|..+++|||..++--  .    ..++|.+++++++|.|-+ |.+....   .+....+.+.|||+
T Consensus       137 ~~~~~~~~~~~ld~kd~f~ksd~~l~~~~~~~d~s~~~~~~tEv~~n~l~p~w~~-~~i~~~~l~~~~~~~~~~i~~~d~  215 (529)
T KOG1327|consen  137 DVVQFSFRAKNLDPKDFFSKSDPYLEFYKRVDDGSTQMLYRTEVVKNTLNPQWAP-FSISLQSLCSKDGNRPIQIECYDY  215 (529)
T ss_pred             ceeeeeeeeeecCcccccccCCcceEEEEecCCCceeeccccceeccCCCCcccc-cccchhhhcccCCCCceEEEEecc
Confidence            344445678999999999999999998863  2    467999999999999985 4444332   22456899999999


Q ss_pred             CCCC-CCccEEEEEecccccC
Q 008661          138 DHFV-DDTLGDCTINISDLRD  157 (558)
Q Consensus       138 D~~s-DDfIGev~IpL~eL~~  157 (558)
                      +..+ +++||.+..++..+..
T Consensus       216 ~~~~~~~~ig~~~tt~~~~~~  236 (529)
T KOG1327|consen  216 DSNGKHDLIGKFQTTLSELQE  236 (529)
T ss_pred             CCCCCcCceeEecccHHHhcc
Confidence            9988 7999999999998864

>smart00239 C2 Protein kinase C conserved region 2 (CalB)

Probab=96.55  E-value=0.0086  Score=49.12  Aligned_cols=58  Identities=12%  Similarity=0.116  Sum_probs=44.1

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      ...+||+++.+...   +  ...++|.+..++.||.|| +.|.|..... ....+.++|||....
T Consensus        19 ~~~~~yv~v~~~~~---~--~~~~~T~~~~~~~~P~w~-e~~~~~~~~~-~~~~l~i~v~~~~~~   76 (101)
T smart00239       19 GKSDPYVKVSLDGD---P--KEKKKTKVVKNTLNPVWN-ETFEFEVPPP-ELAELEIEVYDKDRF   76 (101)
T ss_pred             CCCCceEEEEEeCC---c--cceEeeeEecCCCCCccc-ceEEEEecCc-ccCEEEEEEEecCCc
Confidence            34789999999433   1  456899999999999999 8999982221 177888999998754

Ca2+-binding motif present in phospholipases, protein kinases C, and synaptotamins (among others). Some do not appear to contain Ca2+-binding sites. Particular C2s appear to bind phospholipids, inositol polyphosphates, and intracellular proteins. Unusual occurrence in perforin. Synaptotagmin and PLC C2s are permuted in sequence with respect to N- and C-terminal beta strands. SMART detects C2 domains using one or both of two profiles.

>cd04013 C2_SynGAP_like C2 domain present in Ras GTPase activating protein (GAP) family

Probab=96.31  E-value=0.021  Score=53.94  Aligned_cols=66  Identities=9%  Similarity=-0.048  Sum_probs=45.8

Q ss_pred             EEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661          176 HLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE  251 (558)
Q Consensus       176 ~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d  251 (558)
                      .|.|+.....+.....++|+.+.|+..       +..||.++.++.||.|| |.|.|.  .......+.|.|+..+
T Consensus        12 sL~v~V~EAk~Lp~~~~~Y~~i~Ld~~-------~vaRT~v~~~~~nP~W~-E~F~f~--~~~~~~~l~v~v~k~~   77 (146)
T cd04013          12 SLKLWIIEAKGLPPKKRYYCELCLDKT-------LYARTTSKLKTDTLFWG-EHFEFS--NLPPVSVITVNLYRES   77 (146)
T ss_pred             EEEEEEEEccCCCCcCCceEEEEECCE-------EEEEEEEEcCCCCCcce-eeEEec--CCCcccEEEEEEEEcc
Confidence            455555554443334689999999443       44689999999999999 999997  1112355778887544

SynGAP, GAP1, RasGAP, and neurofibromin are all members of the Ras-specific GAP (GTPase-activating protein) family. SynGAP regulates the MAP kinase signaling pathway and is critical for cognition and synapse function. Mutations in this gene causes mental retardation in humans. SynGAP contains a PH-like domain, a C2 domain, and a Ras-GAP domain. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at leas

>PF15627 CEP76-C2: CEP76 C2 domain

Probab=96.20  E-value=0.053  Score=51.94  Aligned_cols=124  Identities=15%  Similarity=0.178  Sum_probs=87.1

Q ss_pred             cCCceEEEEEEEEecCCCCCCC--CCCCCcEEE--EEeCCeEEEeeeecCCCCCccceEEEEeeccCC------------
Q 008661           62 KEPVAYARVEVVEASDMKPSDL--NGLADPYVK--GQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------------  125 (558)
Q Consensus        62 d~~~G~L~VtVieArdL~~~D~--~G~sDPYVk--V~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e------------  125 (558)
                      ++....|+|.|+.++-+...-.  .+..+....  +.+++++++|+.+..+.+|.|+|.|.|.+....            
T Consensus         5 ~~~~~yL~l~vlgGkAFld~l~~~~~~~~s~~~l~l~f~~QRF~S~~Vp~~~eP~f~e~Flf~l~~~~~~~~~~~~~lls   84 (156)
T PF15627_consen    5 DPGRRYLHLRVLGGKAFLDHLQEPEGQVCSTFTLHLHFRGQRFRSKPVPCACEPDFNEEFLFELPRDSFGAGSTATTLLS   84 (156)
T ss_pred             CCCceEEEEEEeCchhHhhhhhccCCCCceEEEEEEEecCceEecCCcccccCCCCCCcEEEEecccccccccchhHhhc
Confidence            3456689999999985532111  134444444  445889999999999999999999999988532            


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEecccccCCCce--eeeeecCC------CCceEEEEEEEEEecc
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH--DMWIPLQN------IKIGRLHLAITVLEES  185 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~--e~W~~L~~------k~~GeL~LsL~y~p~~  185 (558)
                      ..+.|++.|.--|..+ ..++|.-.+.-..+...+..  ..-+.|.+      ...|-|.|++.++|..
T Consensus        85 ~~~pihivli~~d~~~~~~Lv~s~~ldWR~vL~s~~~~~~~~vEL~G~~~e~kv~~GiL~l~lELlP~~  153 (156)
T PF15627_consen   85 ISDPIHIVLIRTDPSGETTLVGSHFLDWRKVLCSGNGSTSFTVELCGVGPESKVPVGILDLRLELLPNL  153 (156)
T ss_pred             CCCceEEEEEEecCCCceEeeeeceehHHHHhccCCCccceeEEEeccCCCCccceeEEEEEEEeecCC
Confidence            2346788888777766 57888888888877665544  33334432      2468999999988864

>cd08684 C2A_Tac2-N C2 domain first repeat found in Tac2-N (Tandem C2 protein in Nucleus)

Probab=96.00  E-value=0.0025  Score=55.70  Aligned_cols=77  Identities=13%  Similarity=0.087  Sum_probs=58.4

Q ss_pred             CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCcccc-ceE---EecCCc
Q 008661          191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQET-GIW---VHQPGS  265 (558)
Q Consensus       191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~~e~-Gv~---v~~pgt  265 (558)
                      +..|+|..+.-.     +--..||+++....||+|+ |.|.|. -..+++.+.+.|.|+..-...+. |-+   +...|.
T Consensus        21 ~~i~ikg~~tl~-----kpv~~KsS~rrgs~d~~f~-ETFVFqi~l~qL~~V~L~fsv~~~~~RKe~iG~~sL~l~s~ge   94 (103)
T cd08684          21 PTIYIKGILTLP-----KPVHFKSSAKEGSNDIEFM-ETFVFAIKLQNLQTVRLVFKIQTQTPRKRTIGECSLSLRTLST   94 (103)
T ss_pred             CeeEEEEEEecC-----CCccccchhhcCCCChhHH-HHHHHHHHHhhccceEEEEEeeccCCccceeeEEEeecccCCH
Confidence            446777655222     2334799999999999999 999999 88899999999999985455555 655   445666


Q ss_pred             cccccCcc
Q 008661          266 EVAQTWEP  273 (558)
Q Consensus       266 ~~~~hW~~  273 (558)
                      +...||.+
T Consensus        95 eE~~HW~e  102 (103)
T cd08684          95 QETDHWLE  102 (103)
T ss_pred             HHhhhhhc
Confidence            77799986

Tac2-N contains two C2 domains and a short C-terminus including a WHXL motif, which are key in stabilizing transport vesicles to the plasma membrane by binding to a plasma membrane. However unlike the usual carboxyl-terminal-type (C-type) tandem C2 proteins, it lacks a transmembrane domain, a Slp-homology domain, and a Munc13-1-interacting domain. Homology search analysis indicate that no known protein motifs are located in its N-terminus, making Tac2-N a novel class of Ca2+-independent, C-type tandem C2 proteins. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphos

>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]

Probab=95.90  E-value=0.025  Score=65.87  Aligned_cols=88  Identities=24%  Similarity=0.371  Sum_probs=68.1

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEeC--C-----eEEEeeeec-CCCCCccceE-EEEeeccCCCCceEEEEEee
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQLG--P-----YRFRTKTQR-KTLSPKWHEE-FNIPISTWDSPNVLVIEVRD  136 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg--p-----~k~KTkVik-kTlNPvWnEt-F~F~V~~~e~~~tL~V~V~D  136 (558)
                      ++|.|+||+|.-|-.++    ...||.|.+-  |     ..++|+++. +++||+|+|. |.|.-.-.+.-..|+|.||+
T Consensus       703 ~t~sV~VISgqFLSdrk----vgtyVEVdmfgLP~Dt~Rk~~rtrt~~~n~~npvy~eepfvF~KVvLpeLA~lRiavye  778 (1189)
T KOG1265|consen  703 ATLSVTVISGQFLSDRK----VGTYVEVDMFGLPTDTIRKEFRTRTVQGNSFNPVYEEEPFVFRKVVLPELASLRIAVYE  778 (1189)
T ss_pred             eeEEEEEEeeeeccccc----cCceEEEEecCCCchhhhhhhhhccccCCCCCcccccCCcccceecccchhheeeeeec
Confidence            68899999999997655    4489999983  3     457888876 8999999976 77753322234589999998


Q ss_pred             cCCCCCCccEEEEEecccccCCCc
Q 008661          137 KDHFVDDTLGDCTINISDLRDGQR  160 (558)
Q Consensus       137 ~D~~sDDfIGev~IpL~eL~~~~~  160 (558)
                      ..   ..|||+-.+|+..|..+..
T Consensus       779 Eg---gK~ig~RIlpvd~l~~GYr  799 (1189)
T KOG1265|consen  779 EG---GKFIGQRILPVDGLNAGYR  799 (1189)
T ss_pred             cC---CceeeeeccchhcccCcce
Confidence            64   4699999999999887754

>cd00030 C2 C2 domain

Probab=95.85  E-value=0.034  Score=44.95  Aligned_cols=56  Identities=14%  Similarity=0.077  Sum_probs=43.4

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      ...+||+.+.+..       ....+|.+...+.||.|| +.|.|.... .....+.++|++....
T Consensus        18 ~~~~~~v~v~~~~-------~~~~~T~~~~~~~~P~w~-~~~~~~~~~-~~~~~l~i~v~~~~~~   73 (102)
T cd00030          18 GKSDPYVKVSLGG-------KQKFKTKVVKNTLNPVWN-ETFEFPVLD-PESDTLTVEVWDKDRF   73 (102)
T ss_pred             CCCCcEEEEEecc-------CceEecceeCCCCCCccc-ceEEEEccC-CCCCEEEEEEEecCCC
Confidence            3488999999943       355789999999999999 999998222 1566789999997754

The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that contain a single C2 domain, such as protein kinase C, or membrane trafficking proteins which contain at least two C2 domains, such as synaptotagmin 1. However, there are a few exceptions to this including RIM isoforms and some splice variants of piccolo/aczonin and intersectin which only have a single C2 domain. C2 domains with a calcium binding region have negatively charged residues, primarily aspartates, that serve as ligands for calcium ions.

>PLN02223 phosphoinositide phospholipase C

Probab=95.59  E-value=0.021  Score=64.10  Aligned_cols=60  Identities=10%  Similarity=-0.057  Sum_probs=43.6

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      ...||||++.+.....+.   .++||.|..+..||+|| |.|.|. .....-..+.|+|+|+|..
T Consensus       433 s~~DpyV~VeI~Gvp~D~---~~~kT~v~nNg~nPvWn-e~F~F~-i~~PELAlLrf~V~D~D~~  492 (537)
T PLN02223        433 SKPDLYVRISIAGVPHDE---KIMKTTVKNNEWKPTWG-EEFTFP-LTYPDLALISFEVYDYEVS  492 (537)
T ss_pred             CCCCeEEEEEEeeccCCc---ceeEEEeCCCCcCceec-ceeEEE-EEccCceEEEEEEEecCCC
Confidence            347899999995432222   34567788888999999 889998 2334456788999999843

>PF12416 DUF3668: Cep120 protein; InterPro: IPR022136 This domain family is found in eukaryotes, and is typically between 75 and 114 amino acids in length

Probab=95.55  E-value=0.12  Score=55.37  Aligned_cols=115  Identities=12%  Similarity=0.215  Sum_probs=90.5

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC------CCceEEEEEeecCCC-
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD------SPNVLVIEVRDKDHF-  140 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e------~~~tL~V~V~D~D~~-  140 (558)
                      +.|+|++|++++...   ...-+|...+......|..+..+-.|.||-.+...+....      .+..|++++|-.|.. 
T Consensus         2 ivl~i~egr~F~~~~---~~~~vv~a~~ng~~l~TDpv~~~~~p~f~teL~WE~Dr~~l~~~r~~~tPiKl~c~a~~~~~   78 (340)
T PF12416_consen    2 IVLSILEGRNFPQRP---RHPIVVEAKFNGESLETDPVPHTESPQFNTELAWECDRKALKQHRLQRTPIKLQCFAVDGST   78 (340)
T ss_pred             EEEEEecccCCCCCC---CccEEEEEEeCCceeeecCCCCCCCceeecceeeeccHHHHHHhhccCCceEEEEEEecCCC
Confidence            678999999998652   3456788889999999999999999999999988776311      345799999999843 


Q ss_pred             C-CCccEEEEEecccc---cCC--CceeeeeecCCC------CceEEEEEEEEEecc
Q 008661          141 V-DDTLGDCTINISDL---RDG--QRHDMWIPLQNI------KIGRLHLAITVLEES  185 (558)
Q Consensus       141 s-DDfIGev~IpL~eL---~~~--~~~e~W~~L~~k------~~GeL~LsL~y~p~~  185 (558)
                      + .+.||.+.++|..+   ..+  .....||+|..-      ..-+|.|.|......
T Consensus        79 ~~re~iGyv~LdLRsa~~~~~~~~~~~~~W~~LL~~~~~y~~~KPEl~l~l~ie~~~  135 (340)
T PF12416_consen   79 GKRESIGYVVLDLRSAVVPQEKNQKQKPKWYKLLSSSSKYKKHKPELLLSLSIEDDS  135 (340)
T ss_pred             CcceeccEEEEEccccccccccccccCCCeeEccccccccccCCccEEEEEEEeccc
Confidence            3 78999999999998   444  456789999753      356888888877654

>KOG2060 consensus Rab3 effector RIM1 and related proteins, contain PDZ and C2 domains [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.084  Score=56.64  Aligned_cols=114  Identities=10%  Similarity=-0.083  Sum_probs=79.7

Q ss_pred             eccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCccccceEEec
Q 008661          183 EESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQETGIWVHQ  262 (558)
Q Consensus       183 p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e~Gv~v~~  262 (558)
                      ...+...+.+||||+|+..+   +.-.-|+||....+|+.|-|- ....|+  +.++...+.++||--=|.-+...|+. 
T Consensus       283 ~k~~~k~~~apyVkVYlL~~---g~c~ak~ktk~A~kT~~plyq-q~l~f~--~sp~~k~Lq~tv~gdygRmd~k~fmg-  355 (405)
T KOG2060|consen  283 VKPGSKSLPAPYVKVYLLEN---GFCIAKKKTKSARKTLDPLYQ-QQLSFD--QSPPGKYLQGTVWGDYGRMDHKSFMG-  355 (405)
T ss_pred             ccCCcccccCceeEEEEcCC---CceecccccccccccCchhhh-hhhhhc--cCCCccEEEEEEeccccccchHHHhh-
Confidence            33344447899999999544   666788899999999999887 666776  44556778889985335555444432 


Q ss_pred             CCccccccCccccCCCCCcccceeecCCCCccCCCCCCCCCCCCCC
Q 008661          263 PGSEVAQTWEPRKGKNRRLDTLVRRVPNGSFNSTNSAASGSLNNDS  308 (558)
Q Consensus       263 pgt~~~~hW~~~l~~~r~~~~q~~~~~~~~~~~~~~~~~~~~~~~~  308 (558)
                          +.+|-.+-|...--|.+-||.+...+.-.| ++.+.-..+.|
T Consensus       356 ----~aqi~l~eL~ls~~~~igwyKlfgsssl~~-~t~~~~Trr~s  396 (405)
T KOG2060|consen  356 ----VAQIMLDELNLSSSPVIGWYKLFGSSSLVP-PTLGHLTRRQS  396 (405)
T ss_pred             ----HHHHHhhhhccccccceeeeeccCCccCCC-cccCcceeecc
Confidence                456777778888889999999998877777 44433333333

>cd08693 C2_PI3K_class_I_beta_delta C2 domain present in class I beta and delta phosphatidylinositol 3-kinases (PI3Ks)

Probab=95.19  E-value=0.11  Score=50.32  Aligned_cols=104  Identities=15%  Similarity=0.210  Sum_probs=70.0

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeec
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDK  137 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~  137 (558)
                      ..++|+|+.+.+|...  ....+-||++.|  |..    ...|+.+.-...+.|||.+.|.+.-  .+....|.|.||+.
T Consensus         8 ~~f~i~i~~~~~~~~~--~~~~~l~V~~~lyhG~~~L~~p~~T~~~~~~~~~~Wnewl~F~I~i~dLPr~ArLciti~~~   85 (173)
T cd08693           8 EKFSITLHKISNLNAA--ERTMKVGVQAGLFHGGESLCKTVKTSEVSGKNDPVWNETLEFDINVCDLPRMARLCFAIYEV   85 (173)
T ss_pred             CCEEEEEEEeccCccC--CCCceEEEEEEEEECCEEccCceEccccCCCCccccceeEEcccchhcCChhHeEEEEEEEe
Confidence            3689999999999762  234667888755  543    3356555555679999999997763  33456899999997


Q ss_pred             CCCC-----------------CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEE
Q 008661          138 DHFV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL  182 (558)
Q Consensus       138 D~~s-----------------DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~  182 (558)
                      ....                 ...||.+.++|-+...        .|   .+|...|.++..
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~ig~~n~~LFd~~~--------~L---r~G~~~L~lW~~  136 (173)
T cd08693          86 SKKAKGKRSRKNQTKKKKKKDDNPIAWVNTMVFDYKG--------QL---KTGDHTLYMWTY  136 (173)
T ss_pred             cccccccccccccccccccCcceEEEEEeEEEEcccc--------hh---hcCCeEEEecCC
Confidence            5321                 3577888777765332        12   257777777643

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, beta and delta isoforms of PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Ty

>PLN02952 phosphoinositide phospholipase C

Probab=95.05  E-value=0.061  Score=61.33  Aligned_cols=58  Identities=10%  Similarity=-0.110  Sum_probs=42.2

Q ss_pred             CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .||||++.+..-...   ..++||.++.++.||+|| |.|.|. .....-.-+.|+|+|+|..
T Consensus       497 ~D~yV~V~i~G~p~D---~~~~kTkvi~nN~nPvWn-E~F~F~-i~~PELAllrf~V~D~D~~  554 (599)
T PLN02952        497 PDFYTKMYIVGVPAD---NAKKKTKIIEDNWYPAWN-EEFSFP-LTVPELALLRIEVREYDMS  554 (599)
T ss_pred             CCceEEEEEeccCCC---CcceeeeeccCCCCcccC-CeeEEE-EEcCCccEEEEEEEecCCC
Confidence            589999999543222   245689999999999999 789998 1123345778899998743

>cd08398 C2_PI3K_class_I_alpha C2 domain present in class I alpha phosphatidylinositol 3-kinases (PI3Ks)

Probab=94.73  E-value=0.18  Score=48.24  Aligned_cols=104  Identities=18%  Similarity=0.262  Sum_probs=71.4

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeec
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDK  137 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~  137 (558)
                      ..++|+|+.+.++...   ..++-||.+.+  +..    ...|+.+.. .++.|||...|.+.-  .+....|.|+||+.
T Consensus         8 ~~~~v~i~~~~~~~~~---~~~~l~V~v~l~~g~~~L~~pv~T~~v~~-~~~~WnEwL~fpI~i~dLPr~ArL~iti~~~   83 (158)
T cd08398           8 SNLRIKILCATYVNVN---DIDKIYVRTGIYHGGEPLCDNVNTQRVPC-SNPRWNEWLDYDIYIPDLPRSARLCLSICSV   83 (158)
T ss_pred             CCeEEEEEeeccCCCC---CcCeEEEEEEEEECCEEccCeeEecccCC-CCCccceeEEcccchhcCChhheEEEEEEEE
Confidence            3588999999999754   34688988866  442    224444433 579999999997763  33456899999997


Q ss_pred             CCCC-----CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEEec
Q 008661          138 DHFV-----DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEE  184 (558)
Q Consensus       138 D~~s-----DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p~  184 (558)
                      ...+     ...||.+.++|-+...        .|   .+|...|.++..+.
T Consensus        84 ~~~~~~k~~~~~iG~~ni~LFd~~~--------~L---r~G~~~L~lW~~~~  124 (158)
T cd08398          84 KGRKGAKEEHCPLAWGNINLFDYTD--------TL---VSGKMALNLWPVPH  124 (158)
T ss_pred             ecccCCCCceEEEEEEEEEEECCCC--------hh---hCCCEEEEEEcCCc
Confidence            6421     2469999999886432        12   26888888876443

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, alpha isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a c

>PLN02230 phosphoinositide phospholipase C 4

Probab=94.29  E-value=0.065  Score=61.05  Aligned_cols=58  Identities=7%  Similarity=-0.174  Sum_probs=43.0

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      ..||||++.|.......   .++||.+..+..||+|| |.|.|. .....-..+.|+|+|+|.
T Consensus       495 ~~DpyV~Vei~Gvp~D~---~~~kT~v~~n~~nP~Wn-eef~F~-l~vPELAllRf~V~d~d~  552 (598)
T PLN02230        495 PPDFFVRVGIAGAPVDE---VMEKTKIEYDTWTPIWN-KEFIFP-LAVPELALLRVEVHEHDI  552 (598)
T ss_pred             CCCceEEEEEEECCCCC---cccceeccCCCCCCccC-CeeEEE-EEcCceeEEEEEEEECCC
Confidence            47999999995432111   34578888899999999 889998 223446778899999875

>PLN02222 phosphoinositide phospholipase C 2

Probab=94.01  E-value=0.073  Score=60.51  Aligned_cols=58  Identities=9%  Similarity=-0.167  Sum_probs=42.6

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      ..||||++.|..-.. +  ..++||.+++++.||+|| |.|.|. .....-.-+.|.|+|+|.
T Consensus       478 ~~dpyV~Vei~G~p~-D--~~~~rTk~v~nn~nP~W~-e~f~F~-i~~PeLAllRf~V~d~D~  535 (581)
T PLN02222        478 PPDFYTRVGIAGVPG-D--TVMKKTKTLEDNWIPAWD-EVFEFP-LTVPELALLRLEVHEYDM  535 (581)
T ss_pred             CCCeeEEEEEeccCC-C--cceeeeEecCCCCCcccC-CeeEEE-EEcCceeEEEEEEEECCC
Confidence            478999999943211 1  244689999999999999 899998 223445778899999873

>cd08689 C2_fungal_Pkc1p C2 domain found in protein kinase C (Pkc1p) in Saccharomyces cerevisiae

Probab=93.99  E-value=0.21  Score=45.19  Aligned_cols=51  Identities=10%  Similarity=0.056  Sum_probs=37.6

Q ss_pred             CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCccc
Q 008661          191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQQE  255 (558)
Q Consensus       191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~~e  255 (558)
                      ++|||.+.+...       .+.||..   +.||.|| |.|.|.. +  ....++++|||..|..-
T Consensus        23 ~etyV~IKved~-------~kaRTr~---srnd~Wn-E~F~i~V-d--k~nEiel~VyDk~~~~~   73 (109)
T cd08689          23 PETYVSIKVEDV-------ERARTKP---SRNDRWN-EDFEIPV-E--KNNEEEVIVYDKGGDQP   73 (109)
T ss_pred             CCcEEEEEECCE-------EEEeccC---CCCCccc-ceEEEEe-c--CCcEEEEEEEeCCCCee
Confidence            799999999433       3566644   5899999 7799884 3  46788999999765444

This family is named after the protein kinase C in Saccharomyces cerevisiae, Pkc1p. Protein kinase C is a member of a family of Ser/Thr phosphotransferases that are involved in many cellular signaling pathways. PKC has two antiparallel coiled-coiled regions (ACC finger domain) (AKA PKC homology region 1 (HR1)/ Rho binding domain) upstream of the C2 domain and two C1 domains downstream. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular permutation involving their N- and C-terminal beta strands. Many C2 domains, like those of PKC, are Ca2+-dependent membrane-targeting modules that bind a wide variety of substances including bind phospholipids, inositol polyphosphates, and intracellular proteins. Most C2 domain proteins are either signal transduction enzymes that

>KOG1452 consensus Predicted Rho GTPase-activating protein [Signal transduction mechanisms]

Probab=93.87  E-value=0.11  Score=54.72  Aligned_cols=118  Identities=12%  Similarity=0.018  Sum_probs=77.2

Q ss_pred             eecCCceEEEEEEEEecCCCCCC--CCCCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEee
Q 008661           60 DVKEPVAYARVEVVEASDMKPSD--LNGLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD  136 (558)
Q Consensus        60 ~Yd~~~G~L~VtVieArdL~~~D--~~G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D  136 (558)
                      ....-.|+|.++++.+++|.-..  .+-+-+-||.+.... .+.+|.+......-.|.|+|...+..   ...|.+-||.
T Consensus        45 ~~~s~tGiL~~H~~~GRGLr~~p~~kglt~~~ycVle~drqh~aRt~vrs~~~~f~w~e~F~~Dvv~---~~vl~~lvyS  121 (442)
T KOG1452|consen   45 RLVSSTGILYFHAYNGRGLRMTPQQKGLTVCFYCVLEPDRQHPARTRVRSSGPGFAWAEDFKHDVVN---IEVLHYLVYS  121 (442)
T ss_pred             eeecccceEEEEEecccccccChhccCceeeeeeeeeecccCccccccccCCCCccchhhceeeccc---ceeeeEEEee
Confidence            34556799999999999997543  255678899988765 45577776666777899999998875   4688999999


Q ss_pred             cCCCC-CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661          137 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV  181 (558)
Q Consensus       137 ~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y  181 (558)
                      |+... +.+.=.-.+.+..+.. +.-+..+.|.-..+|++-+++.+
T Consensus       122 W~pq~RHKLC~~g~l~~~~v~r-qspd~~~Al~lePrgq~~~r~~~  166 (442)
T KOG1452|consen  122 WPPQRRHKLCHLGLLEAFVVDR-QSPDRVVALYLEPRGQPPLRLPL  166 (442)
T ss_pred             cCchhhccccccchhhhhhhhh-cCCcceeeeecccCCCCceeccc
Confidence            98765 5432111222222222 22233333333457777776654

>PF10358 NT-C2: N-terminal C2 in EEIG1 and EHBP1 proteins; InterPro: IPR019448 This entry represents the N-terminal 150 residues of a family of conserved proteins which are induced by oestrogen []

Probab=93.84  E-value=1.3  Score=40.55  Aligned_cols=117  Identities=20%  Similarity=0.287  Sum_probs=80.0

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe---EEEeeeec-CCCCCccceEEEEeeccCC-------CCceEEEE
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQR-KTLSPKWHEEFNIPISTWD-------SPNVLVIE  133 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~---k~KTkVik-kTlNPvWnEtF~F~V~~~e-------~~~tL~V~  133 (558)
                      .-.+.|+|.+..+++.    ...--||+...+..   ..+|.... ..-.-.|||.|.+.+.-..       ....|.|.
T Consensus         6 kf~~~l~i~~l~~~p~----~~~~v~v~wkr~~~~~~~~~t~~~~~~~~~v~w~e~~~~~~tl~~~~k~~~~~~K~~~~~   81 (143)
T PF10358_consen    6 KFQFDLTIHELENLPS----SNGKVFVKWKRGDKSKGSGTTSRANVKNGKVQWNEEFSFPCTLYRDKKSKEFQPKELKFS   81 (143)
T ss_pred             eEEEEEEEEEeECcCC----CCCEEEEEEEECCCCccceeeeeeeccccEEEEeeEEEEEEEEEEcCCCCcEeeEEEEEE
Confidence            3468889999999976    22445666666654   34554433 4455789999998765211       23478999


Q ss_pred             EeecCCCCC-CccEEEEEecccccCC--CceeeeeecCCC--CceEEEEEEEEEecc
Q 008661          134 VRDKDHFVD-DTLGDCTINISDLRDG--QRHDMWIPLQNI--KIGRLHLAITVLEES  185 (558)
Q Consensus       134 V~D~D~~sD-DfIGev~IpL~eL~~~--~~~e~W~~L~~k--~~GeL~LsL~y~p~~  185 (558)
                      |+....-+. ..||.+.|+|.++...  .....-++|...  ....|.|.|.+....
T Consensus        82 v~~~~~~~~k~~lG~~~inLaey~~~~~~~~~~~~~l~~~~~~~a~L~isi~~~~~~  138 (143)
T PF10358_consen   82 VFEVDGSGKKKVLGKVSINLAEYANEDEEPITVRLLLKKCKKSNATLSISISLSELR  138 (143)
T ss_pred             EEEecCCCccceEEEEEEEHHHhhCcCCCcEEEEEeCccCCCCCcEEEEEEEEEECc
Confidence            998754443 5899999999998764  456667777653  346788888877654

Proteins in this entry are usually annotated as Fam102A, Fam102B, or Eeig1 (early oestrogen-responsive gene product 1).

>cd08380 C2_PI3K_like C2 domain present in phosphatidylinositol 3-kinases (PI3Ks)

Probab=93.66  E-value=0.37  Score=45.30  Aligned_cols=103  Identities=19%  Similarity=0.217  Sum_probs=68.1

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeec--cCCCCceEEEEEeecC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRDKD  138 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~--~~e~~~tL~V~V~D~D  138 (558)
                      .++|.|....++...+ ....+-||.+.|  +..    ...|.......++.|||...|.+.  ..+....|.|.||+..
T Consensus         9 ~~~i~i~~~~~~~~~~-~~~~~l~V~~~l~~g~~~l~~~~~t~~~~~~~~~~Wne~l~F~i~~~~LP~~arL~itl~~~~   87 (156)
T cd08380           9 NLRIKIHGITNINLLD-SEDLKLYVRVQLYHGGEPLCPPQSTKKVPFSTSVTWNEWLTFDILISDLPREARLCLSIYAVS   87 (156)
T ss_pred             CeEEEEEeeccccccC-CCceeEEEEEEEEECCEEccCceeccCCcCCCCCcccceeEccchhhcCChhheEEEEEEEEe
Confidence            4778888888876521 234667777765  442    224444434468999999999865  3334568999999986


Q ss_pred             CCC---CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661          139 HFV---DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV  181 (558)
Q Consensus       139 ~~s---DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y  181 (558)
                      ..+   +..||.+.++|-+...        .|   ..|...|.++-
T Consensus        88 ~~~~~~~~~iG~~~~~lFd~~~--------~L---~~G~~~l~lW~  122 (156)
T cd08380          88 EPGSKKEVPLGWVNVPLFDYKG--------KL---RQGMITLNLWP  122 (156)
T ss_pred             cCCCCcceEEEEEeEEeEcccC--------cE---ecCCEEEeccC
Confidence            553   4789999999887432        12   25777677664

C2 domain present in all classes of PI3Ks. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a circular perm

>cd08397 C2_PI3K_class_III C2 domain present in class III phosphatidylinositol 3-kinases (PI3Ks)

Probab=92.46  E-value=0.42  Score=45.78  Aligned_cols=89  Identities=20%  Similarity=0.202  Sum_probs=61.5

Q ss_pred             CCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeeccC--CCCceEEEEEeecCCCC-CCccEEEEEecccc
Q 008661           85 GLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPISTW--DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL  155 (558)
Q Consensus        85 G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~~--e~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL  155 (558)
                      ..++-||.+.|  +..    ..+|..+.-+..+.|||...|+|.-.  +....|.|+||+....+ ...||.+.++|-+-
T Consensus        28 ~~~~l~V~~~l~~~~~~L~~pv~T~~~~f~~~~~WnEwl~fpI~i~dLP~~a~L~iti~~~~~~~~~~~vg~~~~~lFd~  107 (159)
T cd08397          28 PNSDLFVTCQVFDDGKPLTLPVQTSYKPFKNRRNWNEWLTLPIKYSDLPRNSQLAITIWDVSGTGKAVPFGGTTLSLFNK  107 (159)
T ss_pred             CCCCEEEEEEEEECCEeccCcEEccccCCCCCcccceeEEcccchhcCChhheEEEEEEEecCCCCceEEEEEEEeeECC
Confidence            44777877766  332    23555555556788999999987632  34568999999987654 66899999998864


Q ss_pred             cCCCceeeeeecCCCCceEEEEEEEEEec
Q 008661          156 RDGQRHDMWIPLQNIKIGRLHLAITVLEE  184 (558)
Q Consensus       156 ~~~~~~e~W~~L~~k~~GeL~LsL~y~p~  184 (558)
                      ..      +  |   ..|...|.++....
T Consensus       108 ~g------~--L---r~G~~~l~lw~~~~  125 (159)
T cd08397         108 DG------T--L---RRGRQKLRVWPDVE  125 (159)
T ss_pred             CC------c--E---ecCCEEEEEEeCCC
Confidence            21      1  2   26888788775443

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. These are the only domains identified in the class III PI3Ks present in this cd. In addition some PI3Ks contain a Ras-binding domain and/or a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Ty

>KOG1031 consensus Predicted Ca2+-dependent phospholipid-binding protein [General function prediction only]

Probab=91.89  E-value=0.19  Score=56.53  Aligned_cols=56  Identities=7%  Similarity=-0.025  Sum_probs=48.6

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG  252 (558)
                      .+.|.||.+.+..        ...||.|..+.|||.||-+-|.|+ -..+++.-++.+.++|+|.
T Consensus        23 d~tdafveik~~n--------~t~ktdvf~kslnp~wnsdwfkfevddadlqdeplqi~lld~dt   79 (1169)
T KOG1031|consen   23 DLTDAFVEIKFAN--------TTFKTDVFLKSLNPQWNSDWFKFEVDDADLQDEPLQIRLLDHDT   79 (1169)
T ss_pred             ccchheeEEEecc--------cceehhhhhhhcCCcccccceEEecChhhhccCCeeEEEecccc
Confidence            4578999988832        358999999999999998889999 8889999999999999983

>cd04012 C2A_PI3K_class_II C2 domain first repeat present in class II phosphatidylinositol 3-kinases (PI3Ks)

Probab=91.76  E-value=0.64  Score=44.71  Aligned_cols=109  Identities=21%  Similarity=0.273  Sum_probs=73.3

Q ss_pred             eEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCeE----EEeeeec----CCCCCccceEEEEeecc--CCCCceEEEE
Q 008661           66 AYARVEVVEASDMKPSDLNGLADPYVKGQL--GPYR----FRTKTQR----KTLSPKWHEEFNIPIST--WDSPNVLVIE  133 (558)
Q Consensus        66 G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~k----~KTkVik----kTlNPvWnEtF~F~V~~--~e~~~tL~V~  133 (558)
                      ..+.|+|..+.+++........+-||.+.|  +.+.    ..|+...    -...+.|||...|.+.-  .+....|.|.
T Consensus         8 ~~~~i~v~~~h~~~~~~~~~~~~~~v~~~l~~g~~~L~~~~~T~~~~~~~~f~~~~~Wnewl~F~i~i~~LPrearL~it   87 (171)
T cd04012           8 DLLSVTVSSLHRIPPTWVQSFEDFYLSCSLYHGGRLLCSPVTTKPVKITKSFFPRVVWDEWIEFPIPVCQLPRESRLVLT   87 (171)
T ss_pred             ccEEEEEEEeecCChHHhhccccEEEEEEEEECCEECcCceeccccccccCccccccccceEECccchhcCChhHEEEEE
Confidence            458899999999987665556888988866  4432    2443221    12357799999988763  2345689999


Q ss_pred             EeecCCCC----------CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEEecc
Q 008661          134 VRDKDHFV----------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEES  185 (558)
Q Consensus       134 V~D~D~~s----------DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p~~  185 (558)
                      ||+.....          ...||.+.++|-+...        .|   ..|...|.|+.....
T Consensus        88 l~~~~~~~~~~~~~~~~~~~~lG~~~~~LFd~~~--------~L---~~G~~~L~lW~~~~~  138 (171)
T cd04012          88 LYGTTSSPDGGSNKQRMGPEELGWVSLPLFDFRG--------VL---RQGSLLLGLWPPSKD  138 (171)
T ss_pred             EEEEecCCccccccccccceEEEEEeEeeEcchh--------hh---ccCCEEEEeccCCcc
Confidence            99976543          3588998888876322        12   257888888765443

There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a N-terminal C2 domain, a PIK domain, and a kinase catalytic domain. Unlike class I and class III, class II PI3Ks have additionally a PX domain and a C-terminal C2 domain containing a nuclear localization signal both of which bind phospholipids though in a slightly different fashion. Class II PIK3s act downstream of receptors for growth factors, integrins, and chemokines. PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. C2 domains fold into an 8-standed beta-sandwich that c

>PLN02228 Phosphoinositide phospholipase C

Probab=91.54  E-value=0.22  Score=56.60  Aligned_cols=58  Identities=5%  Similarity=-0.191  Sum_probs=42.2

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCcc-CCCceeecCCCCCCCCceEEEEEeccC
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETT-DKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvw-N~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      ..||||++.+..-..+   ..++||.+.+++.||+| | |.|.|. .....-.-+.|.|+|+|.
T Consensus       457 ~~DpyV~Vei~G~p~D---~~~~rTk~~~n~~nP~W~~-e~f~F~-~~~pELA~lRf~V~D~d~  515 (567)
T PLN02228        457 PPDFFVKIGIAGVPRD---TVSYRTETAVDQWFPIWGN-DEFLFQ-LRVPELALLWFKVQDYDN  515 (567)
T ss_pred             CCCcEEEEEEEecCCC---CCcceeeccCCCCCceECC-CeEEEE-EEcCceeEEEEEEEeCCC
Confidence            4789999999543222   24468888888899999 7 899998 222335677899999873

>cd08399 C2_PI3K_class_I_gamma C2 domain present in class I gamma phosphatidylinositol 3-kinases (PI3Ks)

Probab=90.96  E-value=1.4  Score=43.16  Aligned_cols=106  Identities=16%  Similarity=0.120  Sum_probs=63.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe---EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeecCC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQL--GPY---RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKDH  139 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~---k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~D~  139 (558)
                      .++|+|+.+..+ ..+......-||++.|  +..   ..+|....-+.++.|||.+.|.+.-  .+....|.|.||+...
T Consensus        11 ~friki~~~~~~-~~~~~~~~~l~V~~~Ly~g~~~l~~~~T~~~~~~~~~~WnEwL~f~I~~~dLP~~arLc~ti~~~~~   89 (178)
T cd08399          11 KFRVKILGIDIP-VLPRNTDLTVFVEANIQHGQQVLCQRRTSPKPFTEEVLWNTWLEFDIKIKDLPKGALLNLQIYCGKA   89 (178)
T ss_pred             CEEEEEEeeccc-CcCCCCceEEEEEEEEEECCeecccceeeccCCCCCccccccEECccccccCChhhEEEEEEEEEec
Confidence            477788887633 3322223345666644  432   2256666666789999999898763  2345689999999732


Q ss_pred             CC-----------------CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEEec
Q 008661          140 FV-----------------DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEE  184 (558)
Q Consensus       140 ~s-----------------DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p~  184 (558)
                      .+                 +..||.+.+.|-+...        .|   ..|...|.++-.+.
T Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~l~wvn~~LFD~~~--------~L---r~G~~~L~~W~~~~  140 (178)
T cd08399          90 PALSSKKSAESPSSESKGKHQLLYYVNLLLIDHRF--------LL---RTGEYVLHMWQISG  140 (178)
T ss_pred             CcccccccccccccccccccceEEEEEEEEEcCCC--------ce---ecCCEEEEEecCCC
Confidence            11                 2345555555554221        11   35788777776553

PI3Ks (AKA phosphatidylinositol (PtdIns) 3-kinases) regulate cell processes such as cell growth, differentiation, proliferation, and motility. PI3Ks work on phosphorylation of phosphatidylinositol, phosphatidylinositide (4)P (PtdIns (4)P),2 or PtdIns(4,5)P2. Specifically they phosphorylate the D3 hydroxyl group of phosphoinositol lipids on the inositol ring. There are 3 classes of PI3Ks based on structure, regulation, and specificity. All classes contain a C2 domain, a PIK domain, and a kinase catalytic domain. The members here are class I, gamma isoform PI3Ks and contain both a Ras-binding domain and a p85-binding domain. Class II PI3Ks contain both of these as well as a PX domain, and a C-terminal C2 domain containing a nuclear localization signal. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangements: Type I and Type II, distinguished by a cir

>KOG1264 consensus Phospholipase C [Lipid transport and metabolism]

Probab=90.46  E-value=0.85  Score=53.35  Aligned_cols=74  Identities=9%  Similarity=0.046  Sum_probs=49.2

Q ss_pred             EEEEEEEEeccCC----CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661          175 LHLAITVLEESAK----QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI  250 (558)
Q Consensus       175 L~LsL~y~p~~~~----l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~  250 (558)
                      +.|++.++....-    .++..|||.+.+..--+...  +++.|.|.-+-+||+||++.|.|+ .-..+-.-+.|.|+|-
T Consensus      1065 ~~lsv~vigaRHL~k~gr~i~cPfVevEiiGa~~Dt~--~~~t~~V~dNGlnPiWn~e~ftFe-I~nPe~A~lRF~V~ee 1141 (1267)
T KOG1264|consen 1065 MTLSVKVLGARHLPKLGRSIACPFVEVEIIGAEYDTN--KFKTTVVNDNGLNPIWNPEKFTFE-IYNPEFAFLRFVVYEE 1141 (1267)
T ss_pred             eEEEEEEeeccccccCCCCccCCcEEEEEeccccCCC--ceEEEEeccCCCCCCCCCcceEEE-eeCCceEEEEEEEecc
Confidence            5566665543311    23467999999855444432  334455667779999999999999 3344556778888876


Q ss_pred             c
Q 008661          251 E  251 (558)
Q Consensus       251 d  251 (558)
                      |
T Consensus      1142 D 1142 (1267)
T KOG1264|consen 1142 D 1142 (1267)
T ss_pred             c
Confidence            5

>cd08687 C2_PKN-like C2 domain in Protein kinase C-like (PKN) proteins

Probab=90.21  E-value=2.6  Score=37.41  Aligned_cols=85  Identities=18%  Similarity=0.202  Sum_probs=61.0

Q ss_pred             CCCCcEEEEEeCC-eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCccEEEEEecccccCCCceee
Q 008661           85 GLADPYVKGQLGP-YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDM  163 (558)
Q Consensus        85 G~sDPYVkV~Lgp-~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDfIGev~IpL~eL~~~~~~e~  163 (558)
                      |.++-.+.+.+.+ ...+|.-... .+..|++.|.|.+..   .+.|.|.||=.|-  ..+.|-..+.|.+..    +..
T Consensus         7 ~~~eV~avLklDn~~VgqT~Wk~~-s~q~WDQ~Fti~LdR---sRELEI~VywrD~--RslCav~~lrLEd~~----~~~   76 (98)
T cd08687           7 GCSEVSAVLKLDNTVVGQTQWKPK-SNQAWDQSFTLELER---SRELEIAVYWRDW--RSLCAVKFLKLEDER----HEV   76 (98)
T ss_pred             cccceEEEEEEcCeEEeecccccc-ccccccceeEEEeec---ccEEEEEEEEecc--hhhhhheeeEhhhhc----ccc
Confidence            3367788899887 5567765544 478999999999875   6799999986654  345677778888732    233


Q ss_pred             eeecCCCCceEEEEEEEE
Q 008661          164 WIPLQNIKIGRLHLAITV  181 (558)
Q Consensus       164 W~~L~~k~~GeL~LsL~y  181 (558)
                      -++|.  +.|.|...++|
T Consensus        77 ~~~le--pqg~l~~ev~f   92 (98)
T cd08687          77 QLDME--PQLCLVAELTF   92 (98)
T ss_pred             eeccc--cccEEEEEEEe
Confidence            45555  46888888887

PKN is a lipid-activated serine/threonine kinase. It is a member of the protein kinase C (PKC) superfamily, but lacks a C1 domain. There are at least 3 different isoforms of PKN (PRK1/PKNalpha/PAK1; PKNbeta, and PRK2/PAK2/PKNgamma). The C-terminal region contains the Ser/Thr type protein kinase domain, while the N-terminal region of PKN contains three antiparallel coiled-coil (ACC) finger domains which are relatively rich in charged residues and contain a leucine zipper-like sequence. These domains binds to the small GTPase RhoA. Following these domains is a C2-like domain. Its C-terminal part functions as an auto-inhibitory region. PKNs are not activated by classical PKC activators such as diacylglycerol, phorbol ester or Ca2+, but instead are activated by phospholipids and unsaturated fatty acids. The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 struct

>cd08695 C2_Dock-B C2 domains found in Dedicator Of CytoKinesis (Dock) class B proteins

Probab=87.64  E-value=4.2  Score=40.27  Aligned_cols=56  Identities=20%  Similarity=0.295  Sum_probs=41.4

Q ss_pred             eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCCC---CCccEEEEEecc
Q 008661           98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV---DDTLGDCTINIS  153 (558)
Q Consensus        98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~s---DDfIGev~IpL~  153 (558)
                      ..++|-|...+.+|.|+|++.+.++... ....|.|+++......   ...+|.+.+||-
T Consensus        53 se~~S~V~yH~~~P~W~EtiKi~lP~~~~~~~HL~FtfrH~S~~~k~~~~pfg~s~lpL~  112 (189)
T cd08695          53 SEYRSFVLYHNNSPRWNETIKLPIPIDKFRGSHLRFEFRHCSTKDKGEKKLFGFSFVPLM  112 (189)
T ss_pred             ceEEEEEEEcCCCCCCceeEEEecChhhCCCeeEEEEEEEeeeccCCCCCceEEEEEeec
Confidence            3568999999999999999999998533 3458999888754322   245777777764

Dock-B is one of 4 classes of Dock family proteins. The members here include: Dock3/MOCA (modifier of cell adhesion) and Dock4. Most of these members have been shown to be GEFs specific for Rac, although Dock4 has also been shown to interact indirectly with the Ras family GTPase Rap1, probably through Rap regulatory proteins. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-B members contain a SH3 domain upstream of the C2 domain and a proline-rich region downstream. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold int

>smart00142 PI3K_C2 Phosphoinositide 3-kinase, region postulated to contain C2 domain

Probab=87.05  E-value=3.4  Score=36.29  Aligned_cols=71  Identities=21%  Similarity=0.216  Sum_probs=46.9

Q ss_pred             EEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeecc--CCCCceEEEEEeecC
Q 008661           68 ARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIST--WDSPNVLVIEVRDKD  138 (558)
Q Consensus        68 L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~~--~e~~~tL~V~V~D~D  138 (558)
                      +.+.+....++........++-||.+.|  +..    ...|+.+.-...+.|||...|.+.-  .+....|.|.||+..
T Consensus        13 ~~~~~~~~~~~~l~~~~~~~~l~v~~~l~~g~~~l~~pv~t~~~~~~~~~~Wnewl~f~i~i~~LPr~a~L~~~i~~~~   91 (100)
T smart00142       13 LVITIALIHGIPLNWSRDYSDLYVEIQLYHGGKLLCLPVSTSYKPFFPSVKWNEWLTFPIQISDLPREARLCITIYEVK   91 (100)
T ss_pred             eEEEEEEeeCCCcccccCcceEEEEEEEEECCEEccCcEEecccCCCCCcccceeEEccCchhcCChhhEEEEEEEEee
Confidence            5566777776654433333578888866  442    3355555555568999999987763  234568999999864

Outlier of C2 family.

>cd08694 C2_Dock-A C2 domains found in Dedicator Of CytoKinesis (Dock) class A proteins

Probab=86.91  E-value=5.3  Score=39.85  Aligned_cols=56  Identities=14%  Similarity=0.305  Sum_probs=41.3

Q ss_pred             eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCCC-----CCccEEEEEecc
Q 008661           98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV-----DDTLGDCTINIS  153 (558)
Q Consensus        98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~s-----DDfIGev~IpL~  153 (558)
                      ..++|-|...+.+|.|+|++.+.++... ....|.|+++......     ...+|.+.+||-
T Consensus        53 se~~S~V~Yh~~~P~W~EtIKl~lP~~~~~~~HL~FtfrH~S~~~~kd~~e~pfg~s~lpL~  114 (196)
T cd08694          53 DEYKSVIYYQVDKPKWFETFKVAIPIEDFKSSHLRFTFKHRSSNEAKDKSEKPFALSFVKLM  114 (196)
T ss_pred             eeEEEEEEeecCCCCCceeEEEecChhhCCCeEEEEEEEeeccccccCCCCCceEEEEEeee
Confidence            4678999889999999999999998533 3558999998764321     235666666664

Dock-A is one of 4 classes of Dock family proteins. The members here include: Dock180/Dock1, Dock2, and Dock5. Most of these members have been shown to be GEFs specific for Rac. Dock5 has not been well characterized to date, but most likely also is a GEF specific for Rac. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-A members contain a proline-rich region and a SH3 domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The C2 domain was first identified in PKC. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen

>PF00792 PI3K_C2: Phosphoinositide 3-kinase C2; InterPro: IPR002420 Phosphatidylinositol 3-kinase (PI3-kinase) (2

Probab=86.56  E-value=2.5  Score=39.16  Aligned_cols=70  Identities=23%  Similarity=0.285  Sum_probs=47.8

Q ss_pred             EeeeecCC-CCCccceEEEEeec--cCCCCceEEEEEeecCCCC-C----CccEEEEEecccccCCCceeeeeecCCCCc
Q 008661          101 RTKTQRKT-LSPKWHEEFNIPIS--TWDSPNVLVIEVRDKDHFV-D----DTLGDCTINISDLRDGQRHDMWIPLQNIKI  172 (558)
Q Consensus       101 KTkVikkT-lNPvWnEtF~F~V~--~~e~~~tL~V~V~D~D~~s-D----DfIGev~IpL~eL~~~~~~e~W~~L~~k~~  172 (558)
                      .|....-+ .++.|||.+.|.+.  ..+....|.|.||..+... .    ..||.+.++|-+...        .|   ..
T Consensus        23 ~T~~~~~~~~~~~W~e~l~F~i~i~~LPr~a~L~~~l~~~~~~~~~~~~~~~lgw~n~~lFd~~~--------~L---~~   91 (142)
T PF00792_consen   23 STSYVPFSFSRPKWDEWLTFPIPISDLPREARLCFTLYGVDSKKKSKKKKVPLGWVNLPLFDYRG--------QL---RQ   91 (142)
T ss_dssp             E-S-EESS-SSEEEEEEEEEEEEGGGS-TTEEEEEEEEEEECSTTT--EEEEEEEEEEESB-TTS--------BB---EE
T ss_pred             eccccccccccceEeeEEEeecChHHCChhHeEEEEEEEecCCCccccceeEEEEEEEEeECCCC--------cc---cC
Confidence            56655555 79999999888865  3345669999999988766 3    689999999887532        12   25


Q ss_pred             eEEEEEEEE
Q 008661          173 GRLHLAITV  181 (558)
Q Consensus       173 GeL~LsL~y  181 (558)
                      |...|.++-
T Consensus        92 G~~~L~lW~  100 (142)
T PF00792_consen   92 GPQKLSLWP  100 (142)
T ss_dssp             EEEEEE-EE
T ss_pred             CCEEEEEEc
Confidence            777777743

7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The usually N-terminal C2 domain interacts mainly with the scaffolding helical domain of the enzyme, and exhibits only minor interactions with the catalytic domain []. The domain consists of two four-stranded antiparallel beta-sheets that form a beta-sandwich. Isolated C2 domain binds multilamellar phospholipid vesicles which suggests that this domain could play a role in membrane association. Membrane attachment by C2 domains is typically mediated by the loops connecting beta-strand regions that in other C2 domain-containing proteins are calcium-binding region; GO: 0016303 1-phosphatidylinositol-3-kinase activity, 0046854 phosphatidylinositol phosphorylation, 0048015 phosphatidylinositol-mediated signaling, 0005942 phosphatidylinositol 3-kinase complex; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 3L54_A 1E8Z_A 2CHX_A 3ML8_A 3OAW_A ....

>PLN02964 phosphatidylserine decarboxylase

Probab=85.55  E-value=1.4  Score=51.01  Aligned_cols=59  Identities=5%  Similarity=-0.041  Sum_probs=41.8

Q ss_pred             CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCccc
Q 008661          187 KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQQE  255 (558)
Q Consensus       187 ~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~~e  255 (558)
                      .+.+.|+|..+.-..+       +..||.+.++|+||+|| +.-.|+ -..++.-  ..+.|||++.-..
T Consensus        64 ~~~~~~~~~~~~~~g~-------~~f~t~~~~~~~~p~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~s~  123 (644)
T PLN02964         64 EMKFKDKWLACVSFGE-------QTFRTETSDSTDKPVWN-SEKKLLLEKNGPHL--ARISVFETNRLSK  123 (644)
T ss_pred             hhccCCcEEEEEEecc-------eeeeeccccccCCcccc-hhhceEeccCCcce--EEEEEEecCCCCH
Confidence            3666788766544222       56899999999999999 777777 3344433  4899999886443

>PF14429 DOCK-C2: C2 domain in Dock180 and Zizimin proteins; PDB: 3L4C_A

Probab=85.13  E-value=3  Score=40.38  Aligned_cols=76  Identities=12%  Similarity=0.218  Sum_probs=42.8

Q ss_pred             eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCCC--C--CccEEEEEecccccCCCceeeeeecCCCCc
Q 008661           98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHFV--D--DTLGDCTINISDLRDGQRHDMWIPLQNIKI  172 (558)
Q Consensus        98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~s--D--DfIGev~IpL~eL~~~~~~e~W~~L~~k~~  172 (558)
                      ..+.|.+..++.+|.|+|+|.+.++... ....|.|++++...-.  +  ..+|.+.+||-+ . +..      +   ..
T Consensus        59 ~~~~S~v~yh~k~P~f~deiKi~LP~~l~~~~HLlFtf~h~s~~~~~~~~~~~g~a~lpL~~-~-g~~------i---~d  127 (184)
T PF14429_consen   59 TSYYSSVYYHNKNPQFNDEIKIQLPPDLFPKHHLLFTFYHVSCKESKEKSKPFGYAFLPLMD-N-GTI------I---QD  127 (184)
T ss_dssp             S-EE----TT-SS-EEEEEEEEEE-CCCCTTEEEEEEEEE---SSSS-SS-EEEEEEEESB--T-S-B-----------S
T ss_pred             eEEEEEEEecCCCCCccEEEEEEcCchhcccEEEEEEEEeeccccccCccceeEEEEEEeee-C-CeE------e---cC
Confidence            3567888889999999999999998533 3458999999876543  2  689999999987 3 211      1   24


Q ss_pred             eEEEEEEEEEec
Q 008661          173 GRLHLAITVLEE  184 (558)
Q Consensus       173 GeL~LsL~y~p~  184 (558)
                      |+..|-|.....
T Consensus       128 g~~~L~v~~~~~  139 (184)
T PF14429_consen  128 GEHELPVYKYDK  139 (184)
T ss_dssp             EEEEEEEEE--H
T ss_pred             CCEEEEEEEccc
Confidence            666666665443

>cd08697 C2_Dock-D C2 domains found in Dedicator Of CytoKinesis (Dock) class C proteins

Probab=83.81  E-value=19  Score=35.61  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=62.5

Q ss_pred             hccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecC
Q 008661           33 QTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRK  107 (558)
Q Consensus        33 ~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikk  107 (558)
                      ..+|.|..+.++-.+...-           ...=.++|.+....+-.       ..|.-.|+.+.     ....|.|...
T Consensus         4 ~LYVYP~~l~~~~~k~~~k-----------aRNI~V~V~lrd~D~~~-------~~~l~~I~~g~g~~~~~~~~s~V~yh   65 (185)
T cd08697           4 HLYVYPLHLKYDSQKTFAK-----------ARNIAVCIEFRDSDEED-------AKPLKCIYYGPGGGFTTSAYAAVLHH   65 (185)
T ss_pred             eEEEcccEEEecccccccc-----------cccEEEEEEEEeCCCCc-------CccceEEecCCCCCcceEEEEEEEEc
Confidence            4578888877665552211           12223556665543211       11222222222     4568889888


Q ss_pred             CCCCccceEEEEeeccCC-CCceEEEEEeecCCC------C----CCccEEEEEeccc
Q 008661          108 TLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF------V----DDTLGDCTINISD  154 (558)
Q Consensus       108 TlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~------s----DDfIGev~IpL~e  154 (558)
                      +.+|.|.|++.+.++... ....|.|++|+..-.      .    ...+|.+.+||-.
T Consensus        66 ~k~P~f~dEiKI~LP~~l~~~hHLlFtFyHvsc~~~~k~~~~~~~e~~~Gys~lPLl~  123 (185)
T cd08697          66 NQNPEFYDEIKIELPTQLHEKHHLLFTFYHVSCDINKKGKKKDGVETPVGYAWLPLLK  123 (185)
T ss_pred             CCCCccceeEEEecCCcCCCCeeEEEEEEeeccccccccccCCCccceEEEEEEeeec
Confidence            999999999999998532 345899999987521      0    2356777777654

Dock-D is one of 4 classes of Dock family proteins. The members here include: Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Dock-D are Cdc42-specific GEFs. In addition to the C2 domain (AKA Dock homology region (DHR)-1, CED-5, Dock180, MBC-zizimin homology (CZH) 1) and the DHR-2 (AKA CZH2, or Docker), which all Dock180-related proteins have, Dock-D members contain a functionally uncharacterized domain and a PH domain upstream of the C2 domain. DHR-2 has the catalytic activity for Rac and/or Cdc42, but is structurally unrelated to the DH domain. The C2/DHR-1 domains of Dock180 and Dock4 have been shown to bind phosphatidylinositol-3, 4, 5-triphosphate (PtdIns(3,4,5)P3). The PH domain broadly binds to phospholipids and is thought to be involved in targeting the plasma membrane. The C2 domain was first identified in PKC. C2 domains fold into an 8-stande

>KOG4269 consensus Rac GTPase-activating protein BCR/ABR [Signal transduction mechanisms]

Probab=82.67  E-value=0.53  Score=55.38  Aligned_cols=68  Identities=19%  Similarity=0.340  Sum_probs=53.6

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecC
Q 008661           64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD  138 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D  138 (558)
                      -.|.+.+.+.+|..|..     ...-||...+..     .+.+|.++.+|..|.||++|+..+..   .+.+++..++.+
T Consensus       757 ~ygflh~~vhsat~lkq-----s~~lY~Td~v~e~~~~~s~~st~~iadT~~~~~npe~hv~~~~---sqS~r~~~~ek~  828 (1112)
T KOG4269|consen  757 LYGFLHVIVHSATGLKQ-----SRNLYCTDEVDEFGYFVSKASTRVIADTAEPQWNPEKHVPVIE---SQSSRLEKTEKS  828 (1112)
T ss_pred             cccceeeeecccccccc-----ccceeeehhhhhhccccccccceeeecccCCCCChhcccchhh---ccccchhhhccc
Confidence            45889999999999964     345788776633     56799999999999999999988764   567778888765


Q ss_pred             C
Q 008661          139 H  139 (558)
Q Consensus       139 ~  139 (558)
                      .
T Consensus       829 ~  829 (1112)
T KOG4269|consen  829 T  829 (1112)
T ss_pred             c
Confidence            4

>cd08679 C2_DOCK180_related C2 domains found in Dedicator Of CytoKinesis 1 (DOCK 180) and related proteins

Probab=81.00  E-value=17  Score=35.12  Aligned_cols=55  Identities=11%  Similarity=0.193  Sum_probs=40.3

Q ss_pred             EEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCC-----C-CCccEEEEEeccc
Q 008661           99 RFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF-----V-DDTLGDCTINISD  154 (558)
Q Consensus        99 k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~-----s-DDfIGev~IpL~e  154 (558)
                      .+.|-+..+ .+|.|+|+|.+.++... ....|.|++|+...-     . ...+|.+.+||-+
T Consensus        54 ~~~sv~~~~-k~p~f~deiKi~LP~~l~~~~HLlFtf~hv~~~~~~~~~~~~~~g~a~lpL~~  115 (178)
T cd08679          54 EYTSVVYYH-KNPVFNDEIKIQLPADLTPQHHLLFTFYHVSSKKKQGDKEETPFGYAFLPLMD  115 (178)
T ss_pred             eEEEEEEcC-CCCCCceeEEEecCCccCCCeEEEEEEEccccccccCCCccceEEEEEEeccc
Confidence            445555555 89999999999997432 356899999987532     2 4578888888875

Dock180 was first identified as an 180kd proto-oncogene product c-Crk-interacting protein involved in actin cytoskeletal changes. It is now known that it has Rac-specific GEF activity, but lacks the conventional Dbl homology (DH) domain. There are 10 additional related proteins that can be divided into four classes based on sequence similarity and domain organization: Dock-A which includes Dock180/Dock1, Dock2, and Dock5; Dock-B which includes Dock3/MOCA (modifier of cell adhesion) and Dock4; Dock-C which includes Dock6/Zir1, Dock7/Zir2, and Dock8/Zir3; and Dock-D, which includes Dock9/Zizimin1, Dock10/Zizimin3, and Dock11/Zizimin2/ACG (activated Cdc42-associated GEF). Most of members of classes Dock-A and Dock-B are the GEFs specific for Rac. Those of Dock-D are Cdc42-specific GEFs while those of Dock-C are the GEFs for both. All Dock180-related proteins have two common homolo

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	558
2ep6_A	133	Solution Structure Of The Second C2 Domain From Hum		5e-09
2chd_A	142	Crystal Structure Of The C2a Domain Of Rabphilin-3a		2e-08
2k3h_A	140	Structural Determinants For Ca2+ And Pip2 Binding B		2e-08
3gpe_A	137	Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain		4e-08
1dsy_A	139	C2 Domain From Protein Kinase C (Alpha) Complexed W		4e-08
4dnl_A	140	Crystal Structure Of A C2 Domain Of A Protein Kinas		8e-08
3jzy_A	510	Crystal Structure Of Human Intersectin 2 C2 Domain		1e-07
2uzp_A	144	Crystal Structure Of The C2 Domain Of Human Protein		3e-07
2r83_A	284	Crystal Structure Analysis Of Human Synaptotagmin 1		4e-07
3pfq_A	674	Crystal Structure And Allosteric Activation Of Prot		6e-07
2d8k_A	141	Solution Structure Of The First C2 Domain Of Synapt		6e-07
2nsq_A	155	Crystal Structure Of The C2 Domain Of The Human E3		7e-07
1rsy_A	152	Structure Of The First C2-domain Of Synaptotagmin I		1e-06
1a25_A	149	C2 Domain From Protein Kinase C (Beta) Length = 149		1e-06
3f04_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Len		1e-06
1byn_A	128	Solution Structure Of The Calcium-Bound First C2-Do		1e-06
3f00_A	143	Crystal Structure Of Synaptotagmin I C2a Domain Wit		2e-06
1dqv_A	296	Crystal Structure Of Synaptotagmin Iii C2aC2B Lengt		4e-06
3hn8_A	296	Crystal Structure Of Synaptotagmin Length = 296		4e-06
1rh8_A	142	Three-Dimensional Structure Of The Calcium-Free Pic		7e-05
3kwt_A	148	Munc13-1 C2b-Domain, Calcium-Free Length = 148		1e-04
3rpb_A	140	The C2b-Domain Of Rabphilin: Structural Variations		2e-04
1gmi_A	136	Structure Of The C2 Domain From Novel Protein Kinas		2e-04
2cm6_A	166	Crystal Structure Of The C2b Domain Of Rabphilin3a		3e-04
2cm5_A	166	Crystal Structure Of The C2b Domain Of Rabphilin Le		3e-04
1cjy_A	749	Human Cytosolic Phospholipase A2 Length = 749		4e-04

>pdb|2EP6|A Chain A, Solution Structure Of The Second C2 Domain From Human Mctp2 Protein Length = 133

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/103 (37%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 58  SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF 117
           S DVK+ V   +V+V++A+D+  +D +G +DP+   +LG  R +T T  K L+P+W++ F
Sbjct: 6   SGDVKD-VGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVF 64
Query: 118 NIPISTWDSPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQ 159
             PI   D  +VL + V D+D     D LG   I +  +RDGQ
Sbjct: 65  TFPIK--DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQ 105

>pdb|2CHD|A Chain A, Crystal Structure Of The C2a Domain Of Rabphilin-3a Length = 142

Iteration: 1
 Score = 57.4 bits (137), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 8/122 (6%)
Query: 57  FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSP 111
           FS+   +  +  +  ++ A  +KP D NGLADPYVK  L P      + RTKT R T +P
Sbjct: 20  FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP 79
Query: 112 KWHEEFNIPISTWD--SPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 168
            W+E       T +      L I V D+D F  ++ +G+   ++  L+  QR +  I L+
Sbjct: 80  VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 139
Query: 169 NI 170
            +
Sbjct: 140 RV 141

>pdb|2K3H|A Chain A, Structural Determinants For Ca2+ And Pip2 Binding By The C2a Domain Of Rabphilin-3a Length = 140

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 62/122 (50%), Gaps = 8/122 (6%)
Query: 57  FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSP 111
           FS+   +  +  +  ++ A  +KP D NGLADPYVK  L P      + RTKT R T +P
Sbjct: 18  FSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNP 77
Query: 112 KWHEEFNIP-ISTWDSP-NVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 168
            W+E      I+  D     L I V D+D F  ++ +G+   ++  L+  QR +  I L+
Sbjct: 78  VWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLE 137
Query: 169 NI 170
            +
Sbjct: 138 RV 139

>pdb|3GPE|A Chain A, Crystal Structure Analysis Of Pkc (Alpha)-C2 Domain Complexed With Ca2+ And Ptdins(4,5)p2 Length = 137

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V +A ++ P D NGL+DPYVK +L P      + +TKT R TL+P+W+E F   +   
Sbjct: 20  VTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS 79
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 155
           D    L +E+ D D    +D +G  +  +S+L
Sbjct: 80  DKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 111

>pdb|1DSY|A Chain A, C2 Domain From Protein Kinase C (Alpha) Complexed With Ca2+ And Phosphatidylserine Length = 139

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 52/92 (56%), Gaps = 6/92 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V +A ++ P D NGL+DPYVK +L P      + +TKT R TL+P+W+E F   +   
Sbjct: 21  VTVRDAKNLIPMDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS 80
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 155
           D    L +E+ D D    +D +G  +  +S+L
Sbjct: 81  DKDRRLSVEIWDWDRTTRNDFMGSLSFGVSEL 112

>pdb|4DNL|A Chain A, Crystal Structure Of A C2 Domain Of A Protein Kinase C Alpha (Prkca) From Homo Sapiens At 1.90 A Resolution Length = 140

Iteration: 1
 Score = 55.5 bits (132), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/92 (36%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V +A ++ P D NGL+DPYVK +L P      + +TKT R TL+P+W+E F   +   
Sbjct: 22  VTVRDAKNLIPXDPNGLSDPYVKLKLIPDPKNESKQKTKTIRSTLNPQWNESFTFKLKPS 81
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 155
           D    L +E+ D D    +D  G  +  +S+L
Sbjct: 82  DKDRRLSVEIWDWDRTTRNDFXGSLSFGVSEL 113

>pdb|3JZY|A Chain A, Crystal Structure Of Human Intersectin 2 C2 Domain Length = 510

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 52/92 (56%), Gaps = 4/92 (4%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD-SPN 128
           V V+EA+++K    NG ++PY +  +G   + T+T + TL+PKW+  FN      D   +
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWN--FNCQFFIKDLYQD 448
Query: 129 VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ 159
           VL + + D+D F  DD LG   I ++ +R  Q
Sbjct: 449 VLCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQ 480

>pdb|2UZP|A Chain A, Crystal Structure Of The C2 Domain Of Human Protein Kinase C Gamma. Length = 144

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 41/127 (32%), Positives = 64/127 (50%), Gaps = 8/127 (6%)
Query: 57  FSVDVKEPVA-YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLS 110
             ++++ P A    V V EA ++ P D NGL+DPYVK +L P      + +T+T + TL+
Sbjct: 10  LQLEIRAPTADEIHVTVGEARNLIPMDPNGLSDPYVKLKLIPDPRNLTKQKTRTVKATLN 69
Query: 111 PKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169
           P W+E F   +   D    L +EV D D    +D +G  +  +S+L      D W  L N
Sbjct: 70  PVWNETFVFNLKPGDVERRLSVEVWDWDRTSRNDFMGAMSFGVSELLKAPV-DGWYKLLN 128
Query: 170 IKIGRLH 176
            + G  +
Sbjct: 129 QEEGEYY 135

>pdb|2R83|A Chain A, Crystal Structure Analysis Of Human Synaptotagmin 1 C2a-c2b Length = 284

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 35/106 (33%), Positives = 59/106 (55%), Gaps = 7/106 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 124
           V +++A+++   D+ G +DPYVK  L P    +F TK  RKTL+P ++E+F   +P S  
Sbjct: 23  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 82
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169
            +   LV+ V D D F   D +G+  + ++ +  G   + W  LQ+
Sbjct: 83  -AGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 127

>pdb|3PFQ|A Chain A, Crystal Structure And Allosteric Activation Of Protein Kinase C Beta Ii Length = 674

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 56/104 (53%), Gaps = 7/104 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V +A ++ P D NGL+DPYVK +L P      + +TKT + +L+P+W+E F   +   
Sbjct: 176 VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKES 235
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPL 167
           D    L +E+ D D    +D +G  +  IS+L+     D W  L
Sbjct: 236 DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKL 278

>pdb|2D8K|A Chain A, Solution Structure Of The First C2 Domain Of Synaptotagmin Vii Length = 141

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 6/114 (5%)
Query: 57  FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKW 113
           FSV      +   V++++A ++   D +G +DP+VK  L P   ++  TK +RK L+P W
Sbjct: 17  FSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHW 76
Query: 114 HEEFNIPISTWDS--PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMW 164
           +E F      ++     +L ++V D D F  +D +G+ +I ++ +   Q    W
Sbjct: 77  NETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFW 130

>pdb|2NSQ|A Chain A, Crystal Structure Of The C2 Domain Of The Human E3 Ubiquitin-Protein Ligase Nedd4-Like Protein Length = 155

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 36/95 (37%), Positives = 52/95 (54%), Gaps = 10/95 (10%)
Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPY-------RFRTKTQRKTLSPKWHEEFNIPI 121
           RV+VV   D+   D+ G +DPYVK  L            +TKT +KTL+PKW+EEF   +
Sbjct: 24  RVKVVSGIDLAKKDIFGASDPYVKLSLYVADENRELALVQTKTIKKTLNPKWNEEFYFRV 83
Query: 122 STWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL 155
           +   S + L+ EV D++    DD LG   + +S L
Sbjct: 84  NP--SNHRLLFEVFDENRLTRDDFLGQVDVPLSHL 116

>pdb|1RSY|A Chain A, Structure Of The First C2-domain Of Synaptotagmin I: A Novel Ca2+(slash)phospholipid Binding Fold Length = 152

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 124
           V +++A+++   D+ G +DPYVK  L P    +F TK  RKTL+P ++E+F   +P S  
Sbjct: 46  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 105
Query: 125 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 169
                LV+ V D D F   D +G+  + ++ +  G   + W  LQ+
Sbjct: 106 GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 150

>pdb|1A25|A Chain A, C2 Domain From Protein Kinase C (Beta) Length = 149

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 53/93 (56%), Gaps = 6/93 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V +A ++ P D NGL+DPYVK +L P      + +TKT + +L+P+W+E F   +   
Sbjct: 35  VVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKES 94
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTINISDLR 156
           D    L +E+ D D    +D +G  +  IS+L+
Sbjct: 95  DKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQ 127

>pdb|3F04|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain Length = 143

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 124
           V +++A+++   D+ G +DPYVK  L P    +F TK  RKTL+P ++E+F   +P S  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 125 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 169
                LV+ V D D F   D +G+  + ++ +  G   + W  LQ+
Sbjct: 98  GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>pdb|1BYN|A Chain A, Solution Structure Of The Calcium-Bound First C2-Domain Of Synaptotagmin I Length = 128

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 124
           V +++A+++   D+ G +DPYVK  L P    +F TK  RKTL+P ++E+F   +P S  
Sbjct: 21  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 80
Query: 125 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 169
                LV+ V D D F   D +G+  + ++ +  G   + W  LQ+
Sbjct: 81  GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 125

>pdb|3F00|A Chain A, Crystal Structure Of Synaptotagmin I C2a Domain With Cu(Ii) Length = 143

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 58/106 (54%), Gaps = 7/106 (6%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFN--IPISTW 124
           V +++A+++   D+ G +DPYVK  L P    +F TK  RKTL+P ++E+F   +P S  
Sbjct: 38  VGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSEL 97
Query: 125 DSPNVLVIEVRDKDHFVD-DTLGDCTINISDLRDGQRHDMWIPLQN 169
                LV+ V D D F   D +G+  + ++ +  G   + W  LQ+
Sbjct: 98  GG-KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>pdb|1DQV|A Chain A, Crystal Structure Of Synaptotagmin Iii C2aC2B Length = 296

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHE--EFNIPISTW 124
           V +++A D+   D NG +DPYVK  L P R   F+TK  RKTL+P ++E  +F++P++  
Sbjct: 24  VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 83
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTIN 151
            +   L   V D D F   D +G   ++
Sbjct: 84  -AQRKLHFSVYDFDRFSRHDLIGQVVLD 110

>pdb|3HN8|A Chain A, Crystal Structure Of Synaptotagmin Length = 296

Iteration: 1
 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 7/88 (7%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPKWHE--EFNIPISTW 124
           V +++A D+   D NG +DPYVK  L P R   F+TK  RKTL+P ++E  +F++P++  
Sbjct: 25  VRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAEL 84
Query: 125 DSPNVLVIEVRDKDHFV-DDTLGDCTIN 151
            +   L   V D D F   D +G   ++
Sbjct: 85  -AQRKLHFSVYDFDRFSRHDLIGQVVLD 111

>pdb|1RH8|A Chain A, Three-Dimensional Structure Of The Calcium-Free Piccolo C2a- Domain Length = 142

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 17/116 (14%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWHE 115
           + +++A ++ P D NG +DP+VK  L P              Y+ RTK  +K+L+P+W++
Sbjct: 22  IHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQ 81
Query: 116 EFNIPISTWDS--PNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 168
                  + +      L + V D D F  +D LG+  I++S          W PL+
Sbjct: 82  TVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLK 137

>pdb|3KWT|A Chain A, Munc13-1 C2b-Domain, Calcium-Free Length = 148

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 16/114 (14%)
Query: 66  AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD 125
           A   + VV A  ++  D  G +DPYV  Q+G  + RTKT    L+P W E F+      +
Sbjct: 17  AKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECH--N 74
Query: 126 SPNVLVIEVRDKDHFV------------DDTLGDCTINISDLRDGQRHDMWIPL 167
           S + + + V D+D  +            DD LG   I +  L      D+W  L
Sbjct: 75  SSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNL 126

>pdb|3RPB|A Chain A, The C2b-Domain Of Rabphilin: Structural Variations In A Janus-Faced Domain Length = 140

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++    +   D NG +DP+VK  L P      + +T+ ++KTL+P+++EEF   I   
Sbjct: 19  VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 78
Query: 125 D-SPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMW---IPLQNIKIGRLH 176
           D +   L I V D D    +D +G C + IS    G+R   W   +  ++ KI R H
Sbjct: 79  DLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKKIERWH 133

>pdb|1GMI|A Chain A, Structure Of The C2 Domain From Novel Protein Kinase C Epsilon Length = 136

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 16/114 (14%)
Query: 69  RVEVVEASDMKPS-----DLNG------LADPYVKGQLGPYRF-RTKTQRKTLSPKWHEE 116
           ++++ EA  +KP+     D  G      L DPY+   +   R  +T T++KT SP WH+E
Sbjct: 9   KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68
Query: 117 FNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISD-LRDGQRH-DMWIPLQ 168
           F   +   +   + +    D     DD + +CTI   + L++G RH + WI L+
Sbjct: 69  FVTDVC--NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE 120

>pdb|2CM6|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin3a Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++    +   D NG +DP+VK  L P      + +T+ ++KTL+P+++EEF   I   
Sbjct: 41  VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 125 D-SPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMW---IPLQNIKIGRLH 176
           D +   L I V D D    +D +G C + IS    G+R   W   +  ++ KI R H
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKKIERWH 155

>pdb|2CM5|A Chain A, Crystal Structure Of The C2b Domain Of Rabphilin Length = 166

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 59/117 (50%), Gaps = 12/117 (10%)
Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++    +   D NG +DP+VK  L P      + +T+ ++KTL+P+++EEF   I   
Sbjct: 41  VGIIRCVHLAAXDANGYSDPFVKLWLKPDXGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100
Query: 125 D-SPNVLVIEVRDKD-HFVDDTLGDCTINISDLRDGQRHDMW---IPLQNIKIGRLH 176
           D +   L I V D D    +D +G C + IS    G+R   W   +  ++ KI R H
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGIS--AKGERLKHWYECLKNKDKKIERWH 155

>pdb|1CJY|A Chain A, Human Cytosolic Phospholipase A2 Length = 749

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 35/141 (24%), Positives = 63/141 (44%), Gaps = 12/141 (8%)
Query: 82  DLNGLADPYVKGQLGPY---RFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD 138
           D+    DPYV+  +      R RT+     ++P W+E F   +   +  NVL I + D +
Sbjct: 37  DMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP-NQENVLEITLMDAN 95
Query: 139 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEESAKQGVDSPCDGGT 198
           + +D+TLG  T  +S ++ G++ ++      +    L +++ V      +   + CD   
Sbjct: 96  YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVCSCPDLRFSMALCDQEK 155
Query: 199 LNKEGMGNKEDQSNKEDIRES 219
             +        Q  KE IRES
Sbjct: 156 TFR--------QQRKEHIRES 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	558
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	5e-33
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	1e-32
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	1e-28
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	3e-28
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	1e-26
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	6e-25
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	2e-24
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	8e-24
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	2e-22
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	5e-22
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	6e-22
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	9e-22
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	2e-21
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	2e-21
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	4e-21
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	3e-20
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	7e-20
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	8e-20
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	1e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-19
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	2e-18
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	3e-19
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	6e-19
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	2e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	5e-18
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	2e-15
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	8e-18
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	2e-17
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	3e-17
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	5e-17
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	1e-16
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	2e-16
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	4e-16
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	4e-16
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	1e-15
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	4e-15
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	6e-15
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	7e-15
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	1e-14
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	3e-14
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	2e-12
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	1e-08
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	9e-08
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	2e-06
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	2e-06
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	8e-06
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	4e-04

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1 Length = 126

 Score =  121 bits (306), Expect = 5e-33
 Identities = 29/119 (24%), Positives = 56/119 (47%), Gaps = 7/119 (5%)

Query: 69  RVEVVEASDMK---PSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIS 122
            V V+ A+ +      D+    DPYV+  +      R RT+     ++P W+E F   + 
Sbjct: 6   TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILD 65

Query: 123 TWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181
                NVL I + D ++ +D+TLG  T  +S ++ G++ ++      +    L +++ V
Sbjct: 66  PNQE-NVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEV 123

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1 Length = 133

 Score =  120 bits (304), Expect = 1e-32
 Identities = 39/129 (30%), Positives = 69/129 (53%), Gaps = 6/129 (4%)

Query: 58  SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEF 117
           S    + V   +V+V++A+D+  +D +G +DP+   +LG  R +T T  K L+P+W++ F
Sbjct: 5   SSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVF 64

Query: 118 NIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWI---PLQNIKIG 173
             PI   D  +VL + V D+D     D LG   I +  +RDGQ +   +    L+    G
Sbjct: 65  TFPIK--DIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPNCYVLKNKDLEQAFKG 122

Query: 174 RLHLAITVL 182
            ++L + ++
Sbjct: 123 VIYLEMDLI 131

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1 Length = 136

 Score =  109 bits (275), Expect = 1e-28
 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 20/133 (15%)

Query: 69  RVEVVEASDMKPSDL-----------NGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEE 116
           ++++ EA  +KP+               L DPY+   +   R  +T T++KT SP WH+E
Sbjct: 9   KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68

Query: 117 FNIPISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIG 173
           F   +    +   + + V        DD + +CTI   +L        + WI L+    G
Sbjct: 69  FVTDVC---NGRKIELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEG 123

Query: 174 RLHLAITVLEESA 186
           ++++ I +   S 
Sbjct: 124 KVYVIIDLSGSSG 136

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} PDB: 3kwt_A* Length = 148

 Score =  109 bits (273), Expect = 3e-28
 Identities = 38/137 (27%), Positives = 57/137 (41%), Gaps = 21/137 (15%)

Query: 62  KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPI 121
            +  A   + VV A  ++  D  G +DPYV  Q+G  + RTKT    L+P W E F+   
Sbjct: 13  SKWSAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFEC 72

Query: 122 STWDSPNVLVIEVRDKDHFV------------DDTLGDCTINISDLRDGQRHDMWIPLQN 169
              +S + + + V D+D  +            DD LG   I +  L      D+W  L  
Sbjct: 73  H--NSSDRIKVRVLDEDDDIKSRVKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDK 128

Query: 170 IKI-----GRLHLAITV 181
                   G + L I+V
Sbjct: 129 RTDKSAVSGAIRLHISV 145

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens} Length = 157

 Score =  104 bits (261), Expect = 1e-26
 Identities = 32/148 (21%), Positives = 60/148 (40%), Gaps = 21/148 (14%)

Query: 49  ASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDL----------NGLADPYVKGQLGPY 98
           +   P    S    +   Y RV + EA  ++P+            + L DPY+   +   
Sbjct: 12  SGLVPRGSMSSGTMKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQV 71

Query: 99  R-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLR 156
           R  +T T++KT  P ++EEF   ++       L + V  +     D  + +CT+   +L 
Sbjct: 72  RVGQTSTKQKTNKPTYNEEFCANVT---DGGHLELAVFHETPLGYDHFVANCTLQFQELL 128

Query: 157 DGQR----HDMWIPLQNIKIGRLHLAIT 180
                    + W+ L+    G++ + IT
Sbjct: 129 RTTGASDTFEGWVDLE--PEGKVFVVIT 154

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 140

 Score = 99.4 bits (248), Expect = 6e-25
 Identities = 29/122 (23%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST--WDS 126
           RV V  AS++ P    G  DP V       + +TK     L+P W+E     +     D 
Sbjct: 10  RVIVESASNI-PKTKFGKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDF 68

Query: 127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK-------IGRLHLA 178
            + L I V+D +    +  +G  T+ + DL   Q   +   L ++           + L 
Sbjct: 69  SSSLGIIVKDFETIGQNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLV 128

Query: 179 IT 180
           I 
Sbjct: 129 IG 130

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A Length = 153

 Score = 98.3 bits (245), Expect = 2e-24
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 20/137 (14%)

Query: 62  KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR------FRTKTQRKTLSPKWHE 115
           +E     RV V+    +   D+ G +DPYV+  L           +TKT +K+L+PKW+E
Sbjct: 16  EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNE 75

Query: 116 EFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM------WIPLQ 168
           E    +      + L+ EV D++    DD LG   + +  L                 L 
Sbjct: 76  EILFRVH--PQQHRLLFEVFDENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLH 133

Query: 169 -----NIKIGRLHLAIT 180
                +   G L L +T
Sbjct: 134 PRSHKSRVKGYLRLKMT 150

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2 Length = 136

 Score = 96.3 bits (240), Expect = 8e-24
 Identities = 27/128 (21%), Positives = 53/128 (41%), Gaps = 7/128 (5%)

Query: 58  SVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEE 116
           S     P     V +V A  ++ +D     DPYV+        ++   +    +P+W+E 
Sbjct: 2   SSGSSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNET 61

Query: 117 FNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL-RDGQRHDMWIPLQNIKI-- 172
           F   +S  +    L  ++ DKD    DD +G+ TI +  +  +G        +   +   
Sbjct: 62  FIFTVS--EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYK 119

Query: 173 GRLHLAIT 180
           G + +A++
Sbjct: 120 GEIWVALS 127

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1 Length = 173

 Score = 92.2 bits (229), Expect = 5e-22
 Identities = 22/120 (18%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 128
           ++ V+ A   +         PYV+  +     +T+    T SPKW +   + ++     +
Sbjct: 39  QITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVT---PVS 95

Query: 129 VLVIEVRDKDHFV-DDTLGDCTINISDL---RDGQRHDMWIPLQN-------IKIGRLHL 177
            L   V        D  LG   ++I +     + +  ++ + LQ          IG L +
Sbjct: 96  KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 155

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus} Length = 176

 Score = 92.3 bits (229), Expect = 6e-22
 Identities = 34/147 (23%), Positives = 59/147 (40%), Gaps = 20/147 (13%)

Query: 62  KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY------RFRTKTQRKTLSPKWHE 115
            +     RV+V+    +   D+ G +DPYV+  L           +TKT +K+L+PKW+E
Sbjct: 4   NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNE 63

Query: 116 EFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDM------WIPLQ 168
           E    +      + ++ EV D++    DD LG   + +  L                 L 
Sbjct: 64  EILFRVL--PQRHRILFEVFDENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLH 121

Query: 169 -----NIKIGRLHLAITVLEESAKQGV 190
                +   G L L +T L ++  +  
Sbjct: 122 PRSHKSRVKGYLRLKMTYLPKNGSEDE 148

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2 Length = 149

 Score = 90.9 bits (226), Expect = 9e-22
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 123
            V V +A ++ P D NGL+DPYVK +L P      + +TKT + +L+P+W+E F   +  
Sbjct: 34  IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 93

Query: 124 WDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 173
            D    L +E+ D D    +D +G  +  IS+L      D W  L + + G
Sbjct: 94  SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISEL-QKAGVDGWFKLLSQEEG 143

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A Length = 142

 Score = 90.1 bits (224), Expect = 2e-21
 Identities = 39/122 (31%), Positives = 60/122 (49%), Gaps = 8/122 (6%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLS 110
            FS+   +  +  +  ++ A  +KP D NGLADPYVK  L P      + RTKT R T +
Sbjct: 19  EFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRN 78

Query: 111 PKWHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPL 167
           P W+E       T +      L I V D+D F  ++ +G+   ++  L+  QR +  I L
Sbjct: 79  PVWNETLQYHGITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICL 138

Query: 168 QN 169
           + 
Sbjct: 139 ER 140

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A* Length = 143

 Score = 89.3 bits (222), Expect = 2e-21
 Identities = 35/119 (29%), Positives = 61/119 (51%), Gaps = 5/119 (4%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 112
            +S+D         V +++A+++   D+ G +DPYVK  L P +   F TK  RKTL+P 
Sbjct: 24  QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 83

Query: 113 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQN 169
           ++E+F   +   +     LV+ V D D F   D +G+  + ++ +  G   + W  LQ+
Sbjct: 84  FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2 Length = 152

 Score = 89.0 bits (221), Expect = 4e-21
 Identities = 35/121 (28%), Positives = 62/121 (51%), Gaps = 5/121 (4%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 112
            +S+D         V +++A+++   D+ G +DPYVK  L P +   F TK  RKTL+P 
Sbjct: 32  QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 91

Query: 113 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNI 170
           ++E+F   +   +     LV+ V D D F   D +G+  + ++ +  G   + W  LQ+ 
Sbjct: 92  FNEQFTFKVPYSELGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSA 151

Query: 171 K 171
           +
Sbjct: 152 E 152

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A Length = 749

 Score = 93.9 bits (232), Expect = 3e-20
 Identities = 27/121 (22%), Positives = 51/121 (42%), Gaps = 7/121 (5%)

Query: 62  KEPVAYARVEVVEASD---MKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHE 115
            +      V V+ A+        D+    DPYV+  +      R RT+     ++P W+E
Sbjct: 14  HQYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNE 73

Query: 116 EFNIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL 175
            F   +       VL I + D ++ +D+TLG  T  +S ++ G++ ++      +    L
Sbjct: 74  TFEFILDPNQEN-VLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVL 132

Query: 176 H 176
            
Sbjct: 133 E 133

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A Length = 132

 Score = 84.7 bits (210), Expect = 7e-20
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 10/112 (8%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYR--FRTKTQRKTLSPKWHEEFNIPISTWDS 126
           R+ V+ A ++   D   L DP+ K  +        T T + TL PKW++ +++ +     
Sbjct: 8   RLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYV---GK 64

Query: 127 PNVLVIEVRDKDHFVDDT----LGDCTINISDLRDGQRHDMWIPLQNIKIGR 174
            + + I V +            LG   +  + +   +    +  L   K+  
Sbjct: 65  TDSITISVWNHKKIHKKQGAGFLGCVRLLSNAISRLKDTG-YQRLDLCKLNP 115

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2 Length = 142

 Score = 85.1 bits (211), Expect = 8e-20
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWH 114
            + +++A ++ P D NG +DP+VK  L P              Y+ RTK  +K+L+P+W+
Sbjct: 21  IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80

Query: 115 EEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQN 169
           +       + +      L + V D D F  +D LG+  I++S          W PL+ 
Sbjct: 81  QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 141

 Score = 84.3 bits (209), Expect = 1e-19
 Identities = 33/119 (27%), Positives = 61/119 (51%), Gaps = 6/119 (5%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPK 112
            FSV      +   V++++A ++   D +G +DP+VK  L P   ++  TK +RK L+P 
Sbjct: 16  QFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPH 75

Query: 113 WHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 168
           W+E F      ++     +L ++V D D F  +D +G+ +I ++ +   Q    W  L+
Sbjct: 76  WNETFLFEGFPYEKVVQRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLK 134

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 87.6 bits (217), Expect = 2e-19
 Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 5/118 (4%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY---RFRTKTQRKTLSPK 112
            +S+D         V +++A+++   D+ G +DPYVK  L P    +F TK  RKTL+P 
Sbjct: 9   QYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPV 68

Query: 113 WHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 168
           ++E+F   +   +     LV+ V D D F   D +G+  + ++ +  G   + W  LQ
Sbjct: 69  FNEQFTFKVPYSELAGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQ 126

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2 Length = 284

 Score = 84.5 bits (209), Expect = 2e-18
 Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 19/174 (10%)

Query: 25  KLLSIAFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN 84
            + ++ F     E   L     +         FS+          V ++EA ++K  D+ 
Sbjct: 109 PMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVG 168

Query: 85  GLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV-LVIEVRDKD 138
           GL+DPYVK  L        + +T  ++ TL+P ++E F+  +       V +V+ V D D
Sbjct: 169 GLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQIQKVQVVVTVLDYD 228

Query: 139 HFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQNIKIGRLHLAI 179
               +D +G   +  +      RH              W  LQ  +     LA+
Sbjct: 229 KIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEEEVDAMLAV 282

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 83.2 bits (206), Expect = 3e-19
 Identities = 23/119 (19%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSP 111
            + +D     A   V  +EA      + +G  D YV+G +         +T  +++ L  
Sbjct: 16  HYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT 72

Query: 112 KWHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQ 168
            W E   +P++  + P   L + +R  D F      G+  + +           W  L+
Sbjct: 73  TWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} Length = 153

 Score = 82.8 bits (205), Expect = 6e-19
 Identities = 27/120 (22%), Positives = 45/120 (37%), Gaps = 10/120 (8%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           + ++E   +      G  DPYVK  L P        +T+T      P +HE F  P+   
Sbjct: 31  LHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE 89

Query: 125 DSPNVLVIEVRDKDHF--VDDTLGDCTINISDLRD-GQRHDMWIPLQNIKIGR-LHLAIT 180
           D    L++ V ++         +G  +  +  L    +    W  L    +GR  HL + 
Sbjct: 90  DDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLGRTKHLKVA 149

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2 Length = 129

 Score = 80.8 bits (200), Expect = 2e-18
 Identities = 28/109 (25%), Positives = 44/109 (40%), Gaps = 11/109 (10%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++ A D+   +     +PYVK    P      + RTKT +KTL PKW++ F       
Sbjct: 22  VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 81

Query: 125 DSPN--VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQ 168
                 +L I + D+    +   + LG+  I +           W  LQ
Sbjct: 82  REFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 129

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 83.7 bits (207), Expect = 5e-18
 Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 12/144 (8%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPK 112
            F++          V +++A D+   D NG +DPYVK  L P    +F+TK  RKTL+P 
Sbjct: 10  SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI 69

Query: 113 WHEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTI-NISDLRDGQRH-DMWIPLQ 168
           ++E F   +   +     L   V D D F   D +G   + N+ +L +      +W  + 
Sbjct: 70  FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 129

Query: 169 -----NIKIGRLHLAITVLEESAK 187
                   +G L+ ++  L  +  
Sbjct: 130 EGGSEKADLGELNFSLCYLPTAGL 153

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A Length = 296

 Score = 76.0 bits (187), Expect = 2e-15
 Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 20/121 (16%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 123
            V +++AS++K  DL G +DPYVK  L        + +T  ++ TL+P ++E     ++ 
Sbjct: 155 TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 214

Query: 124 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRD-------------GQRHDMWIPLQ 168
               NV L I V D D    ++ +G C +                     +  + W  L 
Sbjct: 215 ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 274

Query: 169 N 169
            
Sbjct: 275 E 275

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus} Length = 138

 Score = 79.3 bits (196), Expect = 8e-18
 Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 21/119 (17%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE--EFNIPIS 122
           V +++A ++K  D+ G +DPYVK  L        + +T T+++ L+P ++E   F+IP  
Sbjct: 20  VNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTE 79

Query: 123 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQ 168
                  ++I V DKD    +D +G   ++        +H              W  L+
Sbjct: 80  KLRET-TIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK 137

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 141

 Score = 78.1 bits (193), Expect = 2e-17
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 11/110 (10%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++ A D+   +     +PYVK    P      + RTKT +KTL PKW++ F       
Sbjct: 25  VTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHR 84

Query: 125 DSPN--VLVIEVRDKDHFVD---DTLGDCTINISDLRDGQRHDMWIPLQN 169
                 +L I + D+    +   + LG+  I +           W  LQ 
Sbjct: 85  REFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQT 133

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A* Length = 159

 Score = 78.2 bits (193), Expect = 3e-17
 Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 19/129 (14%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++EA ++K  D+ GL+DPYVK  L        + +T  ++ TL+P ++E F+  +   
Sbjct: 29  VVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFE 88

Query: 125 DSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQNI 170
               V +V+ V D D    +D +G   +  +      RH              W  LQ  
Sbjct: 89  QIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE 148

Query: 171 KIGRLHLAI 179
           +     LA+
Sbjct: 149 EEVDAMLAV 157

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens} Length = 148

 Score = 77.4 bits (191), Expect = 5e-17
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 8/107 (7%)

Query: 70  VEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 123
           V V E   +  +D     ++PYVK  L P      + +T  +R T++P + E     I  
Sbjct: 27  VHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPE 86

Query: 124 WDSPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168
                  L   V     F  +  LG+  I +   +  ++ D  +PL 
Sbjct: 87  SLLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLH 133

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens} Length = 155

 Score = 76.3 bits (188), Expect = 1e-16
 Identities = 19/109 (17%), Positives = 47/109 (43%), Gaps = 9/109 (8%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPIST 123
           + +++ S++            ++  + P        FRT+    + +  ++E F + +S 
Sbjct: 47  ILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSY 106

Query: 124 WDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDL-RDGQRHDMWIPLQN 169
                  L ++V   D   +++ LG   I+++++ R G+R   W  L +
Sbjct: 107 PALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLLS 155

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 142

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 24/108 (22%), Positives = 45/108 (41%), Gaps = 10/108 (9%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V V    ++     +G +DPYV+  L P      R +T   +KTL+P + + F+  +S  
Sbjct: 28  VVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLP 86

Query: 125 DSPN-VLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 168
           +     L + V++   F+      LG   + ++     +    W  L 
Sbjct: 87  EVQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLT 134

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A Length = 153

 Score = 74.7 bits (184), Expect = 4e-16
 Identities = 26/120 (21%), Positives = 50/120 (41%), Gaps = 21/120 (17%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHE--EFNIPIS 122
           V V++A  +  SD++GL+DPYVK  L        + +T  ++ T +  ++E   F+IP  
Sbjct: 34  VVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCE 93

Query: 123 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 169
           + +    +   V D +    ++ +G   +  +    G  H              W  L +
Sbjct: 94  SLEEI-SVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD 152

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A Length = 166

 Score = 75.1 bits (185), Expect = 4e-16
 Identities = 35/119 (29%), Positives = 55/119 (46%), Gaps = 19/119 (15%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           V ++    +   D NG +DP+VK  L P      + +T+ ++KTL+P+++EEF   I   
Sbjct: 41  VGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHS 100

Query: 125 DSPNV-LVIEVRDKDHF-VDDTLGDCTINISDLRDGQRH------------DMWIPLQN 169
           D     L I V D D    +D +G C + IS   +  +H            + W  LQN
Sbjct: 101 DLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 159

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 147

 Score = 73.2 bits (180), Expect = 1e-15
 Identities = 29/126 (23%), Positives = 50/126 (39%), Gaps = 12/126 (9%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKP-------SDLNGLADPYVKGQLGPYR---FRTKTQ 105
            FS        +  V V+EA D+ P             ++PYVK  L P +    +T  +
Sbjct: 16  HFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVK 75

Query: 106 RKTLSPKWHEEFNIPISTWDSPN-VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDM 163
           RKT  P + E +   I   ++    L++ V D D F     +G  ++ + ++   +    
Sbjct: 76  RKTQKPVFEERYTFEIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHW 135

Query: 164 WIPLQN 169
           W  L  
Sbjct: 136 WKALIP 141

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus} Length = 540

 Score = 76.9 bits (188), Expect = 4e-15
 Identities = 26/119 (21%), Positives = 44/119 (36%), Gaps = 9/119 (7%)

Query: 64  PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPIST 123
            +A+  V    A  +         D Y+K   G   FRT       +P+W ++ +     
Sbjct: 392 GLAHLVVSNFRAEHLWGDYTTA-TDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVL 450

Query: 124 WDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181
             +   L ++V D D+   DD LG C         G  H++   L +   GR+  +   
Sbjct: 451 LSTGGPLRVQVWDADYGWDDDLLGSCDR---SPHSGF-HEVTCELNH---GRVKFSYHA 502

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2 Length = 138

 Score = 70.8 bits (174), Expect = 6e-15
 Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 8/121 (6%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGL-ADPYVKGQLGPY---RFRTKTQRKTLSP 111
           +FS++         V + EA  +   D   + +DPY+K  + P    + +T+  RKTL P
Sbjct: 12  FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP 71

Query: 112 KWHEEFNIPISTWDSPN--VLVIEVRDKDHF-VDDTLGDCTINISDLRDGQ-RHDMWIPL 167
            + E F      +       L   +   D F  DD +G+  I +S +   + +  M   +
Sbjct: 72  AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREI 131

Query: 168 Q 168
            
Sbjct: 132 I 132

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus} Length = 134

 Score = 70.8 bits (174), Expect = 7e-15
 Identities = 24/107 (22%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW 124
           + V+   D+   D     +PYVK  L P      + +TK  RKT +P ++E       + 
Sbjct: 24  IMVMHIKDLVTED-GADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSK 82

Query: 125 DSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168
           ++     L + V   +    +  LG  T+ + D    +    W  L 
Sbjct: 83  ETLRQRELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLT 129

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1 Length = 131

 Score = 70.0 bits (171), Expect = 1e-14
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 8/105 (7%)

Query: 66  AYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD 125
           +   V V +A      +     + YV  ++   +  T    +   P W ++F   I+   
Sbjct: 5   SLLCVGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIA-VRGSQPSWEQDFMFEIN--R 58

Query: 126 SPNVLVIEVRDKDHFVDDTLGDCTINISDL--RDGQRHDMWIPLQ 168
               L +EV +K    D  +G   I +  +   + +    W+ L 
Sbjct: 59  LDLGLTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 103

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus} Length = 171

 Score = 69.8 bits (171), Expect = 3e-14
 Identities = 25/107 (23%), Positives = 35/107 (32%), Gaps = 10/107 (9%)

Query: 70  VEVVEASDMKPSDL-NGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPIST 123
           VEV+ A  +           PYVK  L          +T+  RKTL P + +      S 
Sbjct: 34  VEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDES- 92

Query: 124 WDSPNVLVIEV-RDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168
                VL + V  D         +G   I + +L        W  L 
Sbjct: 93  -PQGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLF 138

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1 Length = 167

 Score = 64.6 bits (157), Expect = 2e-12
 Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 8/101 (7%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
           V V +A      +     + YV  ++      T    +   P W ++F   I+  D    
Sbjct: 18  VGVKKAKFDGAQEKF---NTYVTLKVQNVESTTIA-VRGSQPSWEQDFMFEINRLDLG-- 71

Query: 130 LVIEVRDKDHFVDDTLGDCTINISDL--RDGQRHDMWIPLQ 168
           L +EV +K    D  +G   I +  +   + +    W+ L 
Sbjct: 72  LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 112

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B Length = 510

 Score = 56.2 bits (135), Expect = 1e-08
 Identities = 30/93 (32%), Positives = 50/93 (53%), Gaps = 2/93 (2%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
           V V+EA+++K    NG ++PY +  +G   + T+T + TL+PKW+      I      +V
Sbjct: 391 VHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKDLY-QDV 449

Query: 130 LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH 161
           L + + D+D F  DD LG   I ++ +R  Q  
Sbjct: 450 LCLTLFDRDQFSPDDFLGRTEIPVAKIRTEQES 482

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus} Length = 483

 Score = 53.8 bits (128), Expect = 9e-08
 Identities = 20/132 (15%), Positives = 40/132 (30%), Gaps = 12/132 (9%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQL-GPYRFRTKTQRKTLSPK---WHEEF--NIPIS 122
           ++ ++EA ++ P         Y +  L      RT ++ ++ S     W E F  N   +
Sbjct: 14  KLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA 68

Query: 123 TWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181
                  L  +   K        +G  T+ ++ L      + W P+           +  
Sbjct: 69  VRALRLHLYRDSDKKRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGS 128

Query: 182 LEESAKQGVDSP 193
                  G    
Sbjct: 129 GGGGGSGGGSGG 140

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A Length = 126

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 19/129 (14%), Positives = 49/129 (37%), Gaps = 18/129 (13%)

Query: 66  AYARVEVVEASDMKPSDLNGLADPY----VKGQLGPYRFRTKTQR-KTLSPKWHEEFNIP 120
            + R+             +    P+    +K  L   R +T  Q+  T+ P+W   F+  
Sbjct: 6   PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAH 65

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL-----RDGQRHDMWIPLQNIKIGRL 175
           I       ++++         ++ + + T+ +S L     ++  + + W+ LQ     ++
Sbjct: 66  IYEGRVIQIVLM------RAAEEPVSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKV 117

Query: 176 HLAITVLEE 184
            +++    E
Sbjct: 118 LMSVQYFLE 126

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens} Length = 138

 Score = 46.6 bits (110), Expect = 2e-06
 Identities = 21/132 (15%), Positives = 48/132 (36%), Gaps = 19/132 (14%)

Query: 66  AYARVEVVEASDMKPSDLNG-LADPYV-----KGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
            + R+ +            G   +PY      +            ++ T+ P W   F+ 
Sbjct: 10  PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDA 69

Query: 120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDL-----RDGQRHDMWIPLQNIKIGR 174
            I   +   V+ I V+ K+    D + + T+ +  L     ++  + ++W+ L+    GR
Sbjct: 70  HI---NKGRVMQIIVKGKN---VDLISETTVELYSLAERCRKNNGKTEIWLELK--PQGR 121

Query: 175 LHLAITVLEESA 186
           + +      E +
Sbjct: 122 MLMNARYFLEMS 133

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus} Length = 144

 Score = 45.0 bits (106), Expect = 8e-06
 Identities = 18/116 (15%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSP-KWHEEFNIPISTWDSP 127
            V +   S+++     G AD   K       F ++          + E F  P+++    
Sbjct: 24  IVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDR 78

Query: 128 N-VLVIEVRDKDH-FVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV 181
           N VL I++ +    F +  +G   + +  + +  R ++   L +     +  ++++
Sbjct: 79  NEVLEIQIFNYSKVFSNKLIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSM 134

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A Length = 624

 Score = 42.2 bits (98), Expect = 4e-04
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 13/119 (10%)

Query: 69  RVEVVEASDMKPSDLNG--LADPYVKGQLG-----PYRFRTKT-QRKTLSPKWHEEFNIP 120
           RV ++    +   + N   + DP V  ++          +T        +P+W  EF   
Sbjct: 500 RVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE 559

Query: 121 ISTWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 178
           ++  D   ++   V D D    +D +G  TI  + L+ G RH   + L +    +   A
Sbjct: 560 VTVPDL-ALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYRH---VHLLSKNGDQHPSA 614

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	558
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	100.0
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	100.0
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	99.88
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	99.86
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	99.86
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	99.86
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	99.86
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	99.86
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	99.85
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	99.85
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	99.85
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	99.85
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.85
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	99.85
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	99.85
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	99.85
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	99.84
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	99.84
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	99.84
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	99.84
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	99.84
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	99.84
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	99.84
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	99.83
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	99.83
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	99.83
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	99.83
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	99.83
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	99.82
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.82
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.82
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	99.82
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.81
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.8
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	99.79
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	99.72
2r83_A	284	Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cel	99.7
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	99.68
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	99.64
1dqv_A	296	Synaptotagmin III; beta sandwich, calcium ION, C2	99.63
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	99.61
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	99.59
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	99.56
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	99.54
3n5a_A	138	Synaptotagmin-7; calcium/phospholipid binding prot	99.51
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	99.49
1w15_A	153	Synaptotagmin IV; metal binding protein, endocytos	99.48
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	99.46
1tjx_A	159	Similar to synaptotagmini/P65; C2B domain, calcium	99.45
2cm5_A	166	Rabphilin-3A; protein transport, zinc-finger, Ca2+	99.38
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	99.19
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.17
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	99.16
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	99.06
1wfm_A	138	Synaptotagmin XIII; C2 domain, exocytosis, neurotr	99.02
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	99.02
2z0u_A	155	WW domain-containing protein 1; C2 domain, alterna	98.97
2dmg_A	142	KIAA1228 protein; beta-sandwich, structural genomi	98.89
3fbk_A	153	RGS3, RGP3, regulator of G-protein signaling 3; al	98.88
1ugk_A	138	Synaptotagmin IV, KIAA1342; beta sandwich, structu	98.86
2chd_A	142	Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium	98.86
3fdw_A	148	Synaptotagmin-like protein 4; structural genomics,	98.82
1v27_A	141	Regulating synaptic membrane exocytosis protein 2;	98.82
2bwq_A	129	Regulating synaptic membrane exocytosis protein 2;	98.75
3f04_A	143	Synaptotagmin-1; C2A, calcium, cell junction, cyto	98.74
1rsy_A	152	Synaptotagmin I; calcium/phospholipid binding prot	98.73
2d8k_A	141	Synaptotagmin VII; exocytosis, calcium binding, ly	98.73
2enp_A	147	B/K protein; C2 type 1,beta sandwich, structural g	98.63
3rdl_A	137	Protein kinase C alpha type; protein kinase PKC, t	98.53
1a25_A	149	CALB, protein kinase C (beta); calcium++/phospholi	98.46
1rh8_A	142	Piccolo protein; beta-sandwich, metal binding prot	98.43
2b3r_A	134	Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA	98.42
2q3x_A	171	Regulating synaptic membrane exocytosis protein 1;	98.41
1rlw_A	126	Phospholipase A2, CALB domain; hydrolase, C2 domai	98.29
2dmh_A	140	Myoferlin; beta-sandwich, FER-1-like protein 3, mu	98.2
3pyc_A	132	E3 ubiquitin-protein ligase smurf1; phospholipid b	98.18
3b7y_A	153	E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-	98.15
2fk9_A	157	Protein kinase C, ETA type; ATP-binding, metal-bin	98.13
1gmi_A	136	Protein kinase C, epsilon type; PKC, C2 domain, X-	98.13
3m7f_B	176	E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB1	98.08
2ep6_A	133	MCTP2 protein; beta sandwich, Ca2+ binding, membra	98.08
2cjt_A	131	UNC-13 homolog A, MUNC13-1; phorbol-ester binding,	98.04
2nq3_A	173	Itchy homolog E3 ubiquitin protein ligase; C2 doma	98.0
1wfj_A	136	Putative elicitor-responsive gene; C2 domain, rike	97.97
3kwu_A	148	MUNC13-1; calcium binding protein, phospholipid bi	97.94
3nsj_A	540	Perforin-1; pore forming protein, immune system; H	97.8
2cjs_A	167	UNC-13 homolog A, MUNC13-1; neurotransmitter trans	97.73
3l9b_A	144	Otoferlin; C2-domain, beta-sheets, cell membrane,	97.46
3pfq_A	674	PKC-B, PKC-beta, protein kinase C beta type; phosp	97.45
1cjy_A	749	CPLA2, protein (cytosolic phospholipase A2); lipid	97.36
3jzy_A	510	Intersectin 2; C2 domain, structural genomics cons	97.3
1djx_A	624	PLC-D1, phosphoinositide-specific phospholipase C,	97.18
2zkm_X	799	1-phosphatidylinositol-4,5-bisphosphate phosphodie	96.57
3bxj_A	483	RAS GTPase-activating protein syngap; GTPase activ	96.46
3qr0_A	816	Phospholipase C-beta (PLC-beta); PH domain, EF han	96.13
3ohm_B	885	1-phosphatidylinositol-4,5-bisphosphate phosphodi	96.02
1yrk_A	126	NPKC-delta, protein kinase C, delta type; C2 domai	88.36
3l4c_A	220	Dedicator of cytokinesis protein 1; DOCK180, DOCK1	88.1
2wxf_A	940	Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca	85.95
2enj_A	138	NPKC-theta, protein kinase C theta type; beta-sand	84.0
3hhm_A	1091	Phosphatidylinositol-4,5-bisphosphate 3-kinase cat	81.95

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=100.00  E-value=4.8e-37  Score=306.53  Aligned_cols=236  Identities=24%  Similarity=0.352  Sum_probs=200.5

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      ..|+++|++.|+...+.|.|+|++|++|+++|..+.+||||++++++   ..++|+++++|+||+|||+|.|.+...+ .
T Consensus         4 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~T~~~~~~~nP~wne~f~f~v~~~~~~   83 (284)
T 2r83_A            4 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELA   83 (284)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEECCCCCSSSSSCCEEEEEEEETCTTSCEECCCCCSCSSCEEEEEEEECCCGGGCT
T ss_pred             ceeEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCeEEEEEEEcCCCceEeCCcccCCCCCeeCceEEEEechHHhC
Confidence            35789999999999999999999999999999999999999999965   5789999999999999999999987533 3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC------CceEEEEEEEEEeccCC------------
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI------KIGRLHLAITVLEESAK------------  187 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k------~~GeL~LsL~y~p~~~~------------  187 (558)
                      ...|.|+|||+|.++ +++||++.++|..+..+.....|++|...      ..|+|++.+.|.+....            
T Consensus        84 ~~~l~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~w~~L~~~~~~~~~~~G~i~l~l~~~p~~~~l~v~v~~a~~L~  163 (284)
T 2r83_A           84 GKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQSAEKEEQEKLGDICFSLRYVPTAGKLTVVILEAKNLK  163 (284)
T ss_dssp             TCEEEEEEEECCSSSCCCEEEEEEEEGGGCCCSSCEEEEEECBCCSSCCCCCCCEEEEEEEEETTTTEEEEEEEEEESCC
T ss_pred             cCEEEEEEEECCCCCCCceeEEEEEcchhcccCCcceeEEEeeccccccccccccEEEEEEecCcCCceEEEEEEeECCC
Confidence            569999999999997 99999999999999888888999999752      46999999999876543            


Q ss_pred             ----CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC--cccc-ceE
Q 008661          188 ----QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GIW  259 (558)
Q Consensus       188 ----l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG--~~e~-Gv~  259 (558)
                          .+.+||||++++..   .+++..++||.++++|+||+|| |.|.|. +.+++....+.|+|||++.  .++. |..
T Consensus       164 ~~d~~~~~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~l~~~~l~i~V~d~d~~~~~~~iG~~  239 (284)
T 2r83_A          164 KMDVGGLSDPYVKIHLMQ---NGKRLKKKKTTIKKNTLNPYYN-ESFSFEVPFEQIQKVQVVVTVLDYDKIGKNDAIGKV  239 (284)
T ss_dssp             CCSTTSCCCEEEEEEEEE---TTEEEEEEECCCCCSCSSCEEE-EEEEEECCTTTGGGEEEEEEEEECCSSSCCCEEEEE
T ss_pred             CcCCCCCcCeEEEEEEEe---CCcEeeeeccceecCCCCCEEc-eeEEEeCCHHHhCceEEEEEEEeCCCCCCCcEEEEE
Confidence                13479999999954   3567788999999999999999 999999 7777777889999999984  4443 654


Q ss_pred             -EecCCc-cccccCccccCCCCCcccceeecCC
Q 008661          260 -VHQPGS-EVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       260 -v~~pgt-~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                       +..... ...+||.+|+.+||+++++||.+-.
T Consensus       240 ~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~  272 (284)
T 2r83_A          240 FVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  272 (284)
T ss_dssp             EEETTCCHHHHHHHHHHHHSTTSCEEEEEECBC
T ss_pred             EECCCCCCcHHHHHHHHHHCCCCchheeeecCC
Confidence             332222 2349999999999999999998863

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=100.00  E-value=1.1e-36  Score=307.93  Aligned_cols=237  Identities=21%  Similarity=0.345  Sum_probs=194.7

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeC---CeEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG---PYRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg---p~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      ..|.+.|+|.|+...+.|.|+|++|++|+.+|..|.+||||++++.   ..+++|+++++|+||+|||+|.|.+...+ .
T Consensus         5 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dPyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~   84 (296)
T 1dqv_A            5 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA   84 (296)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred             eeeEEEEEEEEeCCCCEEEEEEEEeECCCCcCCCCCcCeEEEEEEEcCCCeeEeCCccCCCCCCcEeeEEEEEecHHHhc
Confidence            3578999999999999999999999999999999999999999994   47889999999999999999999987432 2


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEe-cccccC-CCceeeeeecCC-----CCceEEEEEEEEEeccCC-----------
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTIN-ISDLRD-GQRHDMWIPLQN-----IKIGRLHLAITVLEESAK-----------  187 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~Ip-L~eL~~-~~~~e~W~~L~~-----k~~GeL~LsL~y~p~~~~-----------  187 (558)
                      ...|.|+|||+|.++ +++||++.++ |..+.. ......|++|..     ...|+|++.++|.+..+.           
T Consensus        85 ~~~L~~~V~d~d~~~~~~~iG~~~i~~l~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~vsl~y~~~~~~l~v~v~~a~~L  164 (296)
T 1dqv_A           85 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILEGGSEKADLGELNFSLCYLPTAGLLTVTIIKASNL  164 (296)
T ss_dssp             SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBCCSSCCSCCCEEEEEEEEETTTTEEEEEEEEEESC
T ss_pred             CCEEEEEEEEcCCCCCCceEEEEEeccccccccCCccceeeeccccccccccccceEEEEEEeccccceeEEEEEEeecC
Confidence            458999999999997 9999999996 444433 345678999964     246999999999886543           


Q ss_pred             -----CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC--cccc-ce
Q 008661          188 -----QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG--QQET-GI  258 (558)
Q Consensus       188 -----l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG--~~e~-Gv  258 (558)
                           .+.+||||++++..   ++++.+++||.++++|+||+|| |.|.|. +.+.+....+.|+|||++.  .++. |.
T Consensus       165 ~~~d~~g~~Dpyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~l~~~~L~i~V~d~d~~~~~~~iG~  240 (296)
T 1dqv_A          165 KAMDLTGFSDPYVKASLIS---EGRRLKKRKTSIKKNTLNPTYN-EALVFDVAPESVENVGLSIAVVDYDCIGHNEVIGV  240 (296)
T ss_dssp             CCCSSSSCCCEEEEECCCT---TCCTTSCEECCCCCSCSSCEEE-ECCCCCCCSGGGGSCCCCCEEEECCSSSCCEEEEE
T ss_pred             CccCCCCCCCcEEEEEEEe---CCcCccceecceecCCCCCeEC-ceEEEEcCHHHccCcEEEEEEEeCCCCCCCceEEE
Confidence                 23379999999943   4566788999999999999999 999999 6667777899999999984  4443 54


Q ss_pred             E-E--ecCCccccccCccccCCCCCcccceeecCCC
Q 008661          259 W-V--HQPGSEVAQTWEPRKGKNRRLDTLVRRVPNG  291 (558)
Q Consensus       259 ~-v--~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~~  291 (558)
                      . +  ..-+....+||.+|+.+||+|+++||.+...
T Consensus       241 ~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~~  276 (296)
T 1dqv_A          241 CRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVEE  276 (296)
T ss_dssp             CCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBBC
T ss_pred             EEECCccCCchhHHHHHHHHhCCCCceeEeeeccCc
Confidence            4 2  2222224589999999999999999998854

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=99.88  E-value=3.4e-22  Score=178.52  Aligned_cols=123  Identities=31%  Similarity=0.465  Sum_probs=111.4

Q ss_pred             eEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEee
Q 008661           57 FSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD  136 (558)
Q Consensus        57 fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D  136 (558)
                      .++.|..+.+.|+|+|++|++|++++..|.+||||++++++.+++|+++++|+||+|||+|.|.+..  ....|.|+|||
T Consensus         4 ~s~~~~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~wne~f~f~~~~--~~~~l~i~V~d   81 (133)
T 2ep6_A            4 GSSGDVKDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFD   81 (133)
T ss_dssp             CCCCSCCCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEE
T ss_pred             ccccccCCceEEEEEEEeeECCCCCCCCCCcCeEEEEEECCEEEEeeeecCCCCCccccEEEEEecC--CCCEEEEEEEE
Confidence            3567899999999999999999999999999999999999999999999999999999999999985  35789999999


Q ss_pred             cCCCC-CCccEEEEEecccccCCCceeeeeecCC-----CCceEEEEEEEEEe
Q 008661          137 KDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITVLE  183 (558)
Q Consensus       137 ~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~-----k~~GeL~LsL~y~p  183 (558)
                      +|.++ +++||++.|+|.++..+  ...|++|..     ...|+|+|+++|..
T Consensus        82 ~d~~~~~~~lG~~~i~l~~l~~~--~~~w~~L~~~~~~~~~~G~i~l~i~~~~  132 (133)
T 2ep6_A           82 EDGDKPPDFLGKVAIPLLSIRDG--QPNCYVLKNKDLEQAFKGVIYLEMDLIY  132 (133)
T ss_dssp             EETTEEEEECCBCEEEGGGCCSS--CCEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             CCCCCCCCeeEEEEEEHHHccCC--CceEEEeecCCCCCccceEEEEEEEEEe
Confidence            99997 99999999999999764  358999975     25699999999875

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.86  E-value=3.2e-21  Score=173.14  Aligned_cols=122  Identities=24%  Similarity=0.296  Sum_probs=108.8

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCC--CCceEEEEEeecCCCC
Q 008661           64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWD--SPNVLVIEVRDKDHFV  141 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e--~~~tL~V~V~D~D~~s  141 (558)
                      ..+.|.|+|++|++|+.++. +.+||||+++++..+++|+++++++||+|||+|.|.+...+  ....|.|+|||+|.++
T Consensus         5 ~~g~L~v~v~~a~~L~~~~~-g~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~~~~~l~i~V~d~d~~~   83 (140)
T 2dmh_A            5 SSGMLRVIVESASNIPKTKF-GKPDPIVSVIFKDEKKKTKKVDNELNPVWNEILEFDLRGIPLDFSSSLGIIVKDFETIG   83 (140)
T ss_dssp             BCCEEEEEEEEEESCCCCSS-SCCCEEEEEECSSCEEECCCCCSCSSCEEEEEEEEECSSCCCCTTCEEEEEEEETTCSS
T ss_pred             CCcEEEEEEEEeeCCCCCCC-CCCCeEEEEEECCEeEEeeeecCCCCCccCcEEEEEecccccCCCCEEEEEEEECCCCC
Confidence            46899999999999999998 99999999999999999999999999999999999997432  3579999999999997


Q ss_pred             -CCccEEEEEecccccCCCceeeeee---cCCC----CceEEEEEEEEEeccC
Q 008661          142 -DDTLGDCTINISDLRDGQRHDMWIP---LQNI----KIGRLHLAITVLEESA  186 (558)
Q Consensus       142 -DDfIGev~IpL~eL~~~~~~e~W~~---L~~k----~~GeL~LsL~y~p~~~  186 (558)
                       +++||++.|+|.++..+.....|+.   |.+.    ..|+|+|+++|.+.+.
T Consensus        84 ~~~~lG~~~i~l~~l~~~~~~~~w~~l~~l~~~~~~~~~G~l~l~~~~~p~~~  136 (140)
T 2dmh_A           84 QNKLIGTATVALKDLTGDQSRSLPYKLISLLNEKGQDTGATIDLVIGYDPPSG  136 (140)
T ss_dssp             SCCCCEEEEEEGGGTCSSSCEEEEEEEEEEECTTCCEEEEEEEEEEEECCCBS
T ss_pred             CCceEEEEEEEHHHhccCCCceeEEeeeeccCCCCCCCCCEEEEEEEEECCCC
Confidence             8999999999999988888899988   6442    3599999999998653

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=99.86  E-value=1.3e-21  Score=174.73  Aligned_cols=123  Identities=21%  Similarity=0.321  Sum_probs=110.1

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCccceEEEEeeccCCCCceEEEEEeecCCC
Q 008661           62 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF  140 (558)
Q Consensus        62 d~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVik-kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~  140 (558)
                      ..+.+.|+|+|++|++|+.++..+.+||||++++++.+++|++++ +++||+|||+|.|.+..  ....|.|+|||++.+
T Consensus         6 ~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~~~~nP~Wne~f~f~v~~--~~~~l~~~V~d~~~~   83 (136)
T 1wfj_A            6 SGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDVG   83 (136)
T ss_dssp             CCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSSC
T ss_pred             CCCcEEEEEEEEeccCCCCcccCCCcCceEEEEECCccceeEeccCCCCCCccCcEEEEEECC--CCCEEEEEEEECCCC
Confidence            346799999999999999999999999999999999999999998 99999999999999986  467999999999998


Q ss_pred             C-CCccEEEEEecccc-cCCCceeeeeecC--CCCceEEEEEEEEEeccC
Q 008661          141 V-DDTLGDCTINISDL-RDGQRHDMWIPLQ--NIKIGRLHLAITVLEESA  186 (558)
Q Consensus       141 s-DDfIGev~IpL~eL-~~~~~~e~W~~L~--~k~~GeL~LsL~y~p~~~  186 (558)
                      + |++||++.|+|.++ ..+.....||+|.  ....|+|+|+++|.+...
T Consensus        84 ~~d~~lG~~~i~l~~l~~~~~~~~~w~~L~~~~~~~G~i~l~l~~~p~~~  133 (136)
T 1wfj_A           84 TEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             TTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             CCCceEEEEEEEHHHhccCCCCCcEEEEeecCCccCEEEEEEEEEEeCCC
Confidence            7 99999999999998 4455578899996  235799999999999764

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.86  E-value=1.3e-21  Score=178.96  Aligned_cols=118  Identities=30%  Similarity=0.490  Sum_probs=107.5

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP  127 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~  127 (558)
                      .|+++++|.|+...+.|+|+|++|++|+.++..+.+||||++++.+   .+++|+++++|+||+|||+|.|.+...+ ..
T Consensus        28 ~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~  107 (152)
T 1rsy_A           28 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG  107 (152)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTT
T ss_pred             ceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcCCCceEeccccCCCCCCcCcccEEEeecHHHcCC
Confidence            5789999999999999999999999999999999999999999953   6789999999999999999999986422 25


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ..|.|+|||+|.++ +++||++.|+|..+..+...+.|++|.+
T Consensus       108 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  150 (152)
T 1rsy_A          108 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  150 (152)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEEchhccCCCCcceEEECCC
Confidence            78999999999997 9999999999999988888899999975

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=99.86  E-value=3.2e-22  Score=185.75  Aligned_cols=118  Identities=16%  Similarity=0.228  Sum_probs=105.9

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCccceEEEEeeccC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTW  124 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkVikkTlNPvWnEtF~F~V~~~  124 (558)
                      ..++++|+|.|+...+.|+|+|++|++|+++|.+|.+||||++++.+      .++||+++++|+||+|||+|.|.+...
T Consensus        28 ~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~~~~~~~~~kT~v~~~tlnP~wnE~F~f~v~~~  107 (155)
T 2z0u_A           28 GATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPCSESTTCLFRTRPLDASDTLVFNEVFWVSMSYP  107 (155)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESCSCHHHHEEECCCEECCSSEEEEEEEEEECCHH
T ss_pred             CcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecCCCCCccceeCCcCCCCCCCccccEEEEEcCHH
Confidence            35788999999999999999999999999999999999999999976      278999999999999999999998742


Q ss_pred             C-CCceEEEEEeecCCCC-CCccEEEEEeccccc-CCCceeeeeecC
Q 008661          125 D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLR-DGQRHDMWIPLQ  168 (558)
Q Consensus       125 e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~-~~~~~e~W~~L~  168 (558)
                      + ....|.|+|||+|.++ +++||++.|+|.++. .+.....||+|.
T Consensus       108 ~l~~~~L~~~V~d~d~~~~~d~iG~~~i~l~~l~~~~~~~~~W~~L~  154 (155)
T 2z0u_A          108 ALHQKTLRVDVCTTDRSHLEECLGGAQISLAEVCRSGERSTRWYNLL  154 (155)
T ss_dssp             HHHHCEEEEEEEEECTTSCEEEEEEEEEECTTSCTTCCCEEEEEEEB
T ss_pred             HhCcCEEEEEEEECCCCCCCcEEEEEEEEHHHccCCCCccccceEcc
Confidence            2 2468999999999998 999999999999995 356788999986

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=99.86  E-value=1.4e-21  Score=172.19  Aligned_cols=117  Identities=25%  Similarity=0.419  Sum_probs=103.5

Q ss_pred             ceEEEEEEEEecCCCCC---CCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecC
Q 008661           65 VAYARVEVVEASDMKPS---DLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD  138 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~---D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D  138 (558)
                      .+.|+|+|++|++|+.+   +..|.+||||++++++   .+++|+++++|+||+|||+|.|.+... ....|.|+|||+|
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~-~~~~l~i~V~d~d   80 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCEEEEEEEECC
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccCCCceEEccccCCCCCCcccceEEEEecCC-CCCEEEEEEEECC
Confidence            47899999999999984   5678999999999986   788999999999999999999999642 4679999999999


Q ss_pred             CCCCCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEE
Q 008661          139 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL  182 (558)
Q Consensus       139 ~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~  182 (558)
                      .+++++||++.|+|.++..+.....|++|.+...|.|+|++...
T Consensus        81 ~~~~~~iG~~~i~l~~l~~~~~~~~~~~L~~~~~g~i~~~le~~  124 (126)
T 1rlw_A           81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA  124 (126)
T ss_dssp             SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECC
T ss_pred             CCCCceeEEEEEEHHHccCCCcEEEEEEcCCCceEEEEEEEEeC
Confidence            98899999999999999988889999999987677777776543

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=99.85  E-value=4.6e-21  Score=174.81  Aligned_cols=120  Identities=30%  Similarity=0.429  Sum_probs=99.4

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEe
Q 008661           62 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR  135 (558)
Q Consensus        62 d~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~  135 (558)
                      ....+.|+|+|++|++|+.++..|.+||||++++.+      ..++|+++++|+||+|||+|.|.+..  ....|.|+||
T Consensus        16 ~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--~~~~l~~~V~   93 (153)
T 3b7y_A           16 EENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDPMNGVLTSVQTKTIKKSLNPKWNEEILFRVHP--QQHRLLFEVF   93 (153)
T ss_dssp             CTTCEEEEEEEEEEESCC-------CCEEEEEEEEETTTEEEEEEECCCCSSCSSCCCCEEEEEEECT--TTCEEEEEEE
T ss_pred             CCCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECCCCccceeeeCccccCCCCCCCCCEEEEEecC--CCCEEEEEEE
Confidence            456789999999999999999889999999999974      57899999999999999999999985  3578999999


Q ss_pred             ecCCCC-CCccEEEEEecccccCCCce------eeeeecCCC-----CceEEEEEEEEEe
Q 008661          136 DKDHFV-DDTLGDCTINISDLRDGQRH------DMWIPLQNI-----KIGRLHLAITVLE  183 (558)
Q Consensus       136 D~D~~s-DDfIGev~IpL~eL~~~~~~------e~W~~L~~k-----~~GeL~LsL~y~p  183 (558)
                      |++.++ +++||++.|+|.++..+...      ..||+|...     ..|+|+|+++|.|
T Consensus        94 d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~i~l~l~~~P  153 (153)
T 3b7y_A           94 DENRLTRDDFLGQVDVPLYPLPTENPRLERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLP  153 (153)
T ss_dssp             ECCSSSCCEEEEEEEEECCSCCBCCTTSCCCCCCEEEECBCSSTTCCCCSEEEEEEEECC
T ss_pred             ECCCCcCCCeeEEEEEEHHHcccCCCcccccccccccccccccCCCCcceEEEEEEEEeC
Confidence            999997 99999999999999776543      589999652     4699999999975

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.85  E-value=2.7e-21  Score=174.28  Aligned_cols=119  Identities=28%  Similarity=0.487  Sum_probs=107.2

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC--C
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD--S  126 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e--~  126 (558)
                      .|.+++++.|....+.|+|+|++|++|+.++..+.+||||++++.+   .+++|+++++|+||+|||+|.|.+...+  .
T Consensus        12 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~~~   91 (141)
T 2d8k_A           12 LGRIQFSVGYNFQESTLTVKIMKAQELPAKDFSGTSDPFVKIYLLPDKKHKLETKVKRKNLNPHWNETFLFEGFPYEKVV   91 (141)
T ss_dssp             CCEEEEEEEECSSSCCEEEEEEEEESCCCCSSSSCCCEEEEEEEESCCSSEEECCCCTTCSSCCCCEEEEECSCCHHHHT
T ss_pred             eeEEEEEEEEeCCCCEEEEEEEEeECCCCCCCCCCCCcEEEEEEECCCCccEeCceEcCCCCCccccEEEECccCHHHcc
Confidence            5789999999999999999999999999999999999999999953   6889999999999999999999863211  3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      ...|.|+|||++.++ +++||++.|+|.++..+.....|++|.+.
T Consensus        92 ~~~l~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  136 (141)
T 2d8k_A           92 QRILYLQVLDYDRFSRNDPIGEVSIPLNKVDLTQMQTFWKDLKPS  136 (141)
T ss_dssp             TSEEEEEEEECCSSSSCEEEEEEEEETTTSCTTSCEEEEECCEEC
T ss_pred             cCEEEEEEEECCCCCCCcEEEEEEEEhhhhcCCCCccEEEECcCC
Confidence            568999999999987 99999999999999988888999999864

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=99.85  E-value=1.3e-20  Score=170.91  Aligned_cols=114  Identities=33%  Similarity=0.511  Sum_probs=103.3

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCC----
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHF----  140 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~----  140 (558)
                      .+.|+|+|++|++|+++|..|.+||||+++++..+++|+++++|+||.|||+|.|.+..  ....|.|+|||+|.+    
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~kT~~~~~t~nP~Wne~f~f~v~~--~~~~l~~~v~d~d~~~~~~   93 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGKTKKRTKTIYGNLNPVWEENFHFECHN--SSDRIKVRVLDEDDDIKSR   93 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCCSCSSCEEEEEEEEEECS--TTCEEEEEEEECCCSHHHH
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECCEEEECCccCCCCCCCcccEEEEEecC--CCCEEEEEEEECCCCcccc
Confidence            58999999999999999999999999999999999999999999999999999999975  347899999999986    


Q ss_pred             -------C-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEE
Q 008661          141 -------V-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL  182 (558)
Q Consensus       141 -------s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~  182 (558)
                             + +++||++.|+|.++  ......|++|...     ..|+|+|+|+|.
T Consensus        94 ~~~~~~~~~~~~lG~~~i~l~~l--~~~~~~w~~L~~~~~~~~~~G~i~l~l~~e  146 (148)
T 3kwu_A           94 VKQRFKRESDDFLGQTIIEVRTL--SGEMDVWYNLDKRTDKSAVSGAIRLHISVE  146 (148)
T ss_dssp             HHTTTSSCSSEEEEEEEEEGGGC--CSEEEEEEECBCSSTTCCCCCEEEEEEEEE
T ss_pred             ccccccCCCCccEEEEEEEHHHC--cCCCCEEEEcccCCCCCCCceEEEEEEEEE
Confidence                   5 99999999999998  3457899999852     469999999985

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=99.85  E-value=2.2e-21  Score=175.07  Aligned_cols=118  Identities=30%  Similarity=0.490  Sum_probs=107.5

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP  127 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~  127 (558)
                      .+++.+++.|....+.|.|+|++|++|+.++..+.+||||++++.+   .+++|+++++|+||+|||+|.|.+...+ ..
T Consensus        20 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l~~   99 (143)
T 3f04_A           20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG   99 (143)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESCCSCCEECCCCCSCSSCEEEEEEEECCCHHHHTT
T ss_pred             eEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECCCCccEECccCcCCCCCcCcCeEEEeecHhhcCC
Confidence            5788999999999999999999999999999889999999999943   5889999999999999999999987422 34


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ..|.|+|||+|.++ +++||++.|+|..+..+...+.|++|++
T Consensus       100 ~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~  142 (143)
T 3f04_A          100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGCCTTSCEEEEEECBC
T ss_pred             CEEEEEEEeCCCCCCCceEEEEEEEHHHccCCCCcceEEECcC
Confidence            69999999999997 9999999999999998888999999975

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.85  E-value=5.2e-21  Score=172.85  Aligned_cols=116  Identities=21%  Similarity=0.341  Sum_probs=103.8

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-  126 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp----~k~KTkVikkTlNPvWnEtF~F~V~~~e~-  126 (558)
                      .|+++|+|.|+...+.|+|+|++|+   ++|.+|.+||||++++.+    .+++|+++++|+||+|||+|.|.+...+. 
T Consensus        12 ~G~l~~sl~y~~~~~~L~V~v~~a~---~~d~~g~sDPyv~v~l~~~~~~~~~kT~v~~~tlnP~wnE~f~f~v~~~~l~   88 (138)
T 1wfm_A           12 APKLHYCLDYDCQKAELFVTRLEAV---TSNHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP   88 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEE---CCCCSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSST
T ss_pred             ceEEEEEEEEeCCCCEEEEEEEEEE---cCCCCCCcceEEEEEEEcCCCcccEecccCcCCCCCcCCceEEEEecHHHcC
Confidence            5789999999999999999999999   467889999999999953    36899999999999999999999875332 


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      ...|.|+|||+|.++ +++||++.|+|.++..+.....|++|.+.
T Consensus        89 ~~~L~~~V~d~d~~~~dd~lG~~~i~l~~l~~~~~~~~W~~L~~~  133 (138)
T 1wfm_A           89 TATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             TCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             CCEEEEEEEECCCCCCCcEEEEEEEEcccccCcccccceeeCcCC
Confidence            468999999999998 99999999999999877788999999864

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=99.85  E-value=2.9e-21  Score=180.79  Aligned_cols=116  Identities=26%  Similarity=0.455  Sum_probs=102.8

Q ss_pred             cCCceEEEEEEEEecCCCCCCC----------CCCCCcEEEEEeCCeE-EEeeeecCCCCCccceEEEEeeccCCCCceE
Q 008661           62 KEPVAYARVEVVEASDMKPSDL----------NGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVL  130 (558)
Q Consensus        62 d~~~G~L~VtVieArdL~~~D~----------~G~sDPYVkV~Lgp~k-~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL  130 (558)
                      ....|.|+|+|++|++|+++|.          .|.+||||+|+++..+ .+|+++++|+||+|||+|.|.+..   ...|
T Consensus        25 ~~~~g~L~V~VieA~~L~~~D~~~~~~~f~~~~g~sDPYv~v~l~~~~~~kT~v~~ktlnP~WNE~F~f~v~~---~~~L  101 (157)
T 2fk9_A           25 MKFNGYLRVRIGEAVGLQPTRWSLRHSLFKKGHQLLDPYLTVSVDQVRVGQTSTKQKTNKPTYNEEFCANVTD---GGHL  101 (157)
T ss_dssp             CCEEEEEEEEEEEEECCCCCHHHHHTTTSSSSCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEE
T ss_pred             ccCccEEEEEEEEEECCCCccccccccccccCCCCCCeEEEEEECCEeeEEeeecCCCCCCccCcEEEEEcCC---CCEE
Confidence            3457999999999999999883          3679999999998855 699999999999999999999875   4589


Q ss_pred             EEEEeecCCCC-CCccEEEEEecccccCC----CceeeeeecCCCCceEEEEEEEEE
Q 008661          131 VIEVRDKDHFV-DDTLGDCTINISDLRDG----QRHDMWIPLQNIKIGRLHLAITVL  182 (558)
Q Consensus       131 ~V~V~D~D~~s-DDfIGev~IpL~eL~~~----~~~e~W~~L~~k~~GeL~LsL~y~  182 (558)
                      .|+|||+|.++ |++||.+.|+|.++..+    ...+.||+|++  .|+|+|+++|.
T Consensus       102 ~~~V~D~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~~~W~~L~~--~G~i~l~l~~~  156 (157)
T 2fk9_A          102 ELAVFHETPLGYDHFVANCTLQFQELLRTTGASDTFEGWVDLEP--EGKVFVVITLT  156 (157)
T ss_dssp             EEEEEECCSSSSCEEEEEEEEEHHHHHHHHTTCSEEEEEEECBS--SCEEEEEEEEC
T ss_pred             EEEEEECCCCCCCCEEEEEEEEHHHhhcccCCCCcccEEEECCC--CcEEEEEEEEE
Confidence            99999999998 99999999999998754    66899999985  89999999873

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=99.85  E-value=4.1e-21  Score=176.13  Aligned_cols=123  Identities=20%  Similarity=0.341  Sum_probs=106.9

Q ss_pred             CCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccC
Q 008661           50 SPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW  124 (558)
Q Consensus        50 s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~  124 (558)
                      .+.|++.|+|.|....+.|.|+|++|++|++++ .|.+||||++++.+     .+++|+++++|+||+|||+|.|.+...
T Consensus        11 ~~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d-~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   89 (153)
T 3fbk_A           11 KVQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQ-PGTCDPYVKISLIPEDSRLRHQKTQTVPDCRDPAFHEHFFFPVQEE   89 (153)
T ss_dssp             --CCCCEEEEEEEESSSEEEEEEEEEESCCCCS-SSCCCEEEEEEEESCSCCTTCEECCCCTTCSSCEEEEEEEEECCGG
T ss_pred             CCCCEEEEEEEEECCCCEEEEEEEEeeCCCCCC-CCCCCEEEEEEEEcCCCCccEEeccccCCCCCCccccEEEEecccH
Confidence            357889999999999999999999999999999 69999999999943     578999999999999999999999643


Q ss_pred             CCCceEEEEEeecCCCC--CCccEEEEEecccccC-CCceeeeeecCCCCce
Q 008661          125 DSPNVLVIEVRDKDHFV--DDTLGDCTINISDLRD-GQRHDMWIPLQNIKIG  173 (558)
Q Consensus       125 e~~~tL~V~V~D~D~~s--DDfIGev~IpL~eL~~-~~~~e~W~~L~~k~~G  173 (558)
                      +....|.|+|||++.++  +++||++.|+|.++.. +.....||+|.+...|
T Consensus        90 ~~~~~L~i~V~d~d~~~~~d~~lG~~~i~l~~l~~~~~~~~~W~~L~~~~~g  141 (153)
T 3fbk_A           90 DDQKRLLVTVWNRASQSRQSGLIGCMSFGVKSLLTPDKEISGWYYLLGEHLG  141 (153)
T ss_dssp             GTTSEEEEEEEECCSSGGGCEEEEEEEEEHHHHTC--CCEEEEEECBCTTGG
T ss_pred             HhCCEEEEEEEeCCCCCCCCcEEEEEEEEHHHhcCCCCccccEEECCChhhc
Confidence            34567999999999974  8999999999999984 6778999999876544

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.85  E-value=4.4e-21  Score=169.60  Aligned_cols=116  Identities=23%  Similarity=0.284  Sum_probs=99.7

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg-----p~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      .|++.+++.|....+.|.|+|++|++|+.++..|.+||||++++.     ..+++|+++++|+||+|||+|.|.+...+ 
T Consensus         4 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~~   83 (129)
T 2bwq_A            4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE   83 (129)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGG
T ss_pred             eEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecCCCCCcceecccccCCCCCccccEEEEccCCHHH
Confidence            467899999999999999999999999999999999999999993     37899999999999999999999953211 


Q ss_pred             -CCceEEEEEeecCCCC---CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 -SPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s---DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                       ....|.|+|||++.++   +++||++.++|.++.... ...||+|+
T Consensus        84 ~~~~~l~~~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~Lq  129 (129)
T 2bwq_A           84 FRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  129 (129)
T ss_dssp             GGGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             hcCCeEEEEEEECCcCcCcCCceeEEEEEEccccCCCc-CCccEECc
Confidence             3469999999999986   889999999999987754 88999985

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=99.84  E-value=1.7e-21  Score=177.31  Aligned_cols=120  Identities=23%  Similarity=0.315  Sum_probs=108.0

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSD-LNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTW  124 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~  124 (558)
                      ..|++.+++.|....+.|.|+|++|++|+.++ ..+.+||||++++.+     .+++|+++++|+||+|||+|.|.+...
T Consensus         8 ~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~   87 (148)
T 3fdw_A            8 VTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPDKSRQGKRKTSIKRDTVNPLYDETLRYEIPES   87 (148)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETCCSGGGEEECCCCSSCSSCEEEEEEEEECCST
T ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcCCcccCccccccCCCCCCCcEeeEEEEEeChh
Confidence            35789999999999999999999999999988 589999999999974     478999999999999999999998753


Q ss_pred             C-CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          125 D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       125 e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      + ....|.|+|||+|.++ +++||++.|+|.++..+.....||+|+++
T Consensus        88 ~~~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~W~~L~~~  135 (148)
T 3fdw_A           88 LLAQRTLQFSVWHHGRFGRNTFLGEAEIQMDSWKLDKKLDHCLPLHGK  135 (148)
T ss_dssp             TGGGCEEEEEEEEECGGGCEEEEEEEEEEHHHHHHHCCSEEEEECBCC
T ss_pred             HhCceEEEEEEEECCCCcCCcEEEEEEEEcccccccCCccceEECcCc
Confidence            3 2457999999999997 89999999999999887788999999874

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=99.84  E-value=6.6e-21  Score=171.57  Aligned_cols=117  Identities=21%  Similarity=0.234  Sum_probs=101.6

Q ss_pred             ceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCccceEEEEe-eccCC-CC
Q 008661           55 NWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIP-ISTWD-SP  127 (558)
Q Consensus        55 l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg-----p~k~KTkVikkTlNPvWnEtF~F~-V~~~e-~~  127 (558)
                      ..|.+.|+...+.|.|+|++|++|+. +.++.+||||++++.     ..+++|+++++|+||+|||+|.|. +...+ ..
T Consensus         9 ~~~~~~~~~~~~~L~V~V~~a~~L~~-~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wnE~f~f~~v~~~~l~~   87 (134)
T 2b3r_A            9 GAVKLSVSYRNGTLFIMVMHIKDLVT-EDGADPNPYVKTYLLPDTHKTSKRKTKISRKTRNPTFNEMLVYSGYSKETLRQ   87 (134)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEECCCC-TTSCCCCEEEEEEEESCSSSCCCEECCCCCSCSSCEEEEEEEEESCCHHHHTT
T ss_pred             EEEEEEEeecCCEEEEEEEEeeCCCC-CCCCCCCeEEEEEEEcCCCCCceecCCcCcCCCCCCCccEEEECCcCHHHhCc
Confidence            34788888899999999999999997 778999999999993     367899999999999999999999 76322 35


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCc
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKI  172 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~  172 (558)
                      ..|.|+|||+|.++ +++||++.|+|.++..+.....||+|.+...
T Consensus        88 ~~L~~~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~~  133 (134)
T 2b3r_A           88 RELQLSVLSAESLRENFFLGGITLPLKDFNLSKETVKWYQLTAATY  133 (134)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGSCTTSCEEEEEECBC---
T ss_pred             CEEEEEEEECCCCCCCcEEEEEEEEhhhccCCCCcceeEECCCccC
Confidence            69999999999998 8999999999999998888999999987543

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.84  E-value=5e-21  Score=171.48  Aligned_cols=121  Identities=23%  Similarity=0.279  Sum_probs=106.4

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg-----p~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      .|++.+++.|....+.|.|+|++|++|+.++..+.+||||++++.     ..+++|+++++|+||+|||+|.|.+...+ 
T Consensus         7 ~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~~~~~~~   86 (141)
T 1v27_A            7 GGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRRE   86 (141)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSCCSSSSCCBCCCCSSCSSCCCCCCCEECSCCTTG
T ss_pred             ccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecCCCCCcceeCccccCCCCCccccEEEEccCCHHH
Confidence            578899999999999999999999999999999999999999994     36789999999999999999999953222 


Q ss_pred             -CCceEEEEEeecCCCC---CCccEEEEEecccccCCCceeeeeecCCCCce
Q 008661          126 -SPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG  173 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s---DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~G  173 (558)
                       ....|.|+|||++.++   +++||++.|+|.++.... ...||+|.+...|
T Consensus        87 ~~~~~l~i~V~d~d~~~~~~~~~lG~~~i~l~~l~~~~-~~~W~~L~~~~~g  137 (141)
T 1v27_A           87 FRERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQTHDSG  137 (141)
T ss_dssp             GGTCEEEEEEEEBCSSSSCCBCCCEEEEEEGGGCCCSS-EEEEEECBCCSSC
T ss_pred             hcCCEEEEEEEECCCCcCCCCceEEEEEEEccccCCCC-CCceEECcccccC
Confidence             3469999999999986   789999999999987654 8899999876554

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=99.84  E-value=1.3e-20  Score=176.69  Aligned_cols=121  Identities=28%  Similarity=0.439  Sum_probs=99.6

Q ss_pred             cCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEe
Q 008661           62 KEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVR  135 (558)
Q Consensus        62 d~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~  135 (558)
                      ....|.|+|+|++|++|+.++..|.+||||++++++      .+++|+++++++||+|||+|.|.+..  ....|.|+||
T Consensus         4 ~~~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~~kT~v~~~t~nP~Wne~f~f~v~~--~~~~L~~~V~   81 (176)
T 3m7f_B            4 NDDTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDPMSGILTSVQTKTIKKSLNPKWNEEILFRVLP--QRHRILFEVF   81 (176)
T ss_dssp             CTTCEEEEEEEEEEESCC---CCCCCCEEEEEEEEETTTEEEEEEECCCCSSCSSCEEEEEEEEEECT--TTCEEEEEEE
T ss_pred             CCCcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECCCCCcccceeCceECCCCCCcccceEEEEEcC--CCCEEEEEEE
Confidence            456799999999999999999999999999999975      57899999999999999999999985  3568999999


Q ss_pred             ecCCCC-CCccEEEEEecccccCCCce-e-----eeeecCCC-----CceEEEEEEEEEec
Q 008661          136 DKDHFV-DDTLGDCTINISDLRDGQRH-D-----MWIPLQNI-----KIGRLHLAITVLEE  184 (558)
Q Consensus       136 D~D~~s-DDfIGev~IpL~eL~~~~~~-e-----~W~~L~~k-----~~GeL~LsL~y~p~  184 (558)
                      |++.++ +++||++.|+|..+...... +     .||+|...     ..|+|+|+|+|.|.
T Consensus        82 d~d~~~~d~~lG~~~i~l~~l~~~~~~~~~~~~~~w~~L~~~~~~~~~~G~l~l~l~~~p~  142 (176)
T 3m7f_B           82 DENRLTRDDFLGQVDVPLYPLPTENPRMERPYTFKDFVLHPRSHKSRVKGYLRLKMTYLPK  142 (176)
T ss_dssp             ECC----CEEEEEEEEESCSCCBC------CCCCEEEECBCSSTTCCCCSEEEEEEEECC-
T ss_pred             ECCCCCCCcEEEEEEEEHHHccccCCcccccccccEEEccccCCCCccCEEEEEEEEEEeC
Confidence            999997 99999999999999876443 2     79999752     46999999999986

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=99.84  E-value=6.1e-21  Score=171.51  Aligned_cols=116  Identities=27%  Similarity=0.467  Sum_probs=102.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCCC-----------CCcEEEEEeCCeE-EEeeeecCCCCCccceEEEEeeccCCCCceEEE
Q 008661           65 VAYARVEVVEASDMKPSDLNGL-----------ADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVI  132 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~-----------sDPYVkV~Lgp~k-~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V  132 (558)
                      .|.|+|+|++|++|+++|..+.           +||||+++++... .+|+++++|+||+|||+|.|.+..   ...|.|
T Consensus         5 ~g~L~v~v~~a~~L~~~d~~~~~~~g~~~~~~~~DPyv~v~l~~~~~~~T~~~~~t~nP~WnE~f~f~v~~---~~~L~~   81 (136)
T 1gmi_A            5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN---GRKIEL   81 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEEE
T ss_pred             ceEEEEEEEeCcCCCCcccccccccccccCCcCcCcEEEEEECCeEeeeeeEECCCcCCccCCEEEEEecC---CCEEEE
Confidence            5899999999999999885443           9999999998754 699999999999999999999975   279999


Q ss_pred             EEeecCCCC-CCccEEEEEecccccCCC--ceeeeeecCCCCceEEEEEEEEEecc
Q 008661          133 EVRDKDHFV-DDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIGRLHLAITVLEES  185 (558)
Q Consensus       133 ~V~D~D~~s-DDfIGev~IpL~eL~~~~--~~e~W~~L~~k~~GeL~LsL~y~p~~  185 (558)
                      +|||+|.++ |++||++.|+|.++..+.  ..+.|++|++  .|+|+|+++|....
T Consensus        82 ~V~d~d~~~~dd~iG~~~i~l~~l~~~~~~~~~~w~~L~~--~G~i~l~l~~~~~~  135 (136)
T 1gmi_A           82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEEE
T ss_pred             EEEeCCCCCCCCEEEEEEEEHHHhcccCCCCccEEEEcCC--CeEEEEEEEEEecC
Confidence            999999988 999999999999997653  3589999985  89999999998754

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=99.84  E-value=5.9e-21  Score=172.01  Aligned_cols=119  Identities=34%  Similarity=0.510  Sum_probs=107.1

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEe-eccC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIP-ISTW  124 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~-V~~~  124 (558)
                      ..|.+.+++.|....+.|.|+|++|++|+.++..|.+||||++++.+     .+++|+++++|+||+|||+|.|. +...
T Consensus        14 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   93 (142)
T 2chd_A           14 TLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLPGASKSNKLRTKTLRNTRNPVWNETLQYHGITEE   93 (142)
T ss_dssp             CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEESCCSGGGEEECCCCCSCSSCEEEEEEEEESCCHH
T ss_pred             ccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEcCCCCcceeeCCcCCCCCCCcCcCEEEEcccCHH
Confidence            35788999999999999999999999999999999999999999976     68899999999999999999998 5431


Q ss_pred             CC-CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          125 DS-PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       125 e~-~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      +. ...|.|+|||++.++ +++||++.|+|.++..++....|++|+.
T Consensus        94 ~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~  140 (142)
T 2chd_A           94 DMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLER  140 (142)
T ss_dssp             HHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBC
T ss_pred             HccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEeccc
Confidence            11 368999999999997 8999999999999998888999999975

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=9.1e-21  Score=170.80  Aligned_cols=119  Identities=21%  Similarity=0.330  Sum_probs=105.1

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      ..|++++++.|....+.|.|+|++|++|++++..+ +||||++++.+     .+++|+++++|+||+|||+|.|.+...+
T Consensus         9 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   87 (142)
T 2dmg_A            9 PLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPDKRRSGRRKTHVSKKTLNPVFDQSFDFSVSLPE   87 (142)
T ss_dssp             SSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESCCCSSSCEECCCCCSCSSCEEEEEEEECCCHHH
T ss_pred             CcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcCCCCCCcccCCccCCCCCCCcCceEEEEecHHH
Confidence            35788999999999999999999999999999888 99999999954     5789999999999999999999986422


Q ss_pred             -CCceEEEEEeecCCCC---CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          126 -SPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s---DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                       ....|.|+|||++.++   +++||++.|+|..+..+.....|++|.+.
T Consensus        88 l~~~~L~i~V~d~d~~~~~~~~~iG~~~i~l~~~~~~~~~~~W~~L~~~  136 (142)
T 2dmg_A           88 VQRRTLDVAVKNSGGFLSKDKGLLGKVLVALASEELAKGWTQWYDLTED  136 (142)
T ss_dssp             HHHCEEEEEEEECCCSSCCSCCCCEEEEEECCCSTTTTCBCCBCCCBCS
T ss_pred             hCcCEEEEEEEECCCccccCCcEEEEEEEecccccccccccceeeccCC
Confidence             2358999999999875   36999999999999887788999999864

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.83  E-value=2.9e-20  Score=167.00  Aligned_cols=120  Identities=24%  Similarity=0.291  Sum_probs=104.9

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCC-CCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEe-eccCC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLN-GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTWD  125 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~-G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~-V~~~e  125 (558)
                      ..|.+.+++.|....+.|.|+|++|++|+.++.. +.+||||++++.+   .+++|+++++|+||+|||+|.|. +...+
T Consensus         7 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~~~~~~kT~v~~~t~nP~wne~f~f~~v~~~~   86 (138)
T 1ugk_A            7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYTQ   86 (138)
T ss_dssp             CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCSTT
T ss_pred             ccEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecCCCceEecCcCcCCCCCcEeeEEEEcCcCHHH
Confidence            3578999999999999999999999999999985 8999999999964   78999999999999999999995 65422


Q ss_pred             -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCc-eeeeeecCCC
Q 008661          126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQR-HDMWIPLQNI  170 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~-~e~W~~L~~k  170 (558)
                       ....|.|+|||+|.++ +++||++.|+|.++..+.. ...|++|++.
T Consensus        87 ~~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~~~~~l~~~  134 (138)
T 1ugk_A           87 IQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREIISG  134 (138)
T ss_dssp             GGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECBSS
T ss_pred             hccCEEEEEEEECCCCCCCcEEEEEEEehhHccCCCCcchhhhhhhcC
Confidence             2458999999999997 8999999999999987644 4678999864

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=5e-21  Score=174.38  Aligned_cols=121  Identities=31%  Similarity=0.495  Sum_probs=105.6

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS  126 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~  126 (558)
                      .+.+.+++.|.  .+.|+|+|++|++|+.++..+.+||||++++.+     .+++|+++++|+||+|||+|.|.+...+.
T Consensus        19 ~G~l~~~l~~~--~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~   96 (149)
T 1a25_A           19 RGRIYIQAHID--REVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDK   96 (149)
T ss_dssp             TCEEEEEEEES--SSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGG
T ss_pred             ceEEEEEEEec--CCEEEEEEEEeeCCCCCCCCCCcCeEEEEEEECCCCCcceEecceeCCCCCCcCCcEEEEEeccccC
Confidence            46788888884  578999999999999999999999999999963     67899999999999999999999975334


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCceEE
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRL  175 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL  175 (558)
                      ...|.|+|||+|.++ +++||++.|+|.++..+ ..+.||+|.+...|++
T Consensus        97 ~~~L~i~V~d~d~~~~~~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g~~  145 (149)
T 1a25_A           97 DRRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEGEY  145 (149)
T ss_dssp             GCEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHHTT
T ss_pred             CCEEEEEEEECCCCCCCCEEEEEEEEHHHhCcC-ccCCeEEccCCCCCcc
Confidence            568999999999997 99999999999999876 5789999987655543

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=99.83  E-value=2.8e-21  Score=173.84  Aligned_cols=118  Identities=28%  Similarity=0.461  Sum_probs=104.0

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe--------------EEEeeeecCCCCCccceEE
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY--------------RFRTKTQRKTLSPKWHEEF  117 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~--------------k~KTkVikkTlNPvWnEtF  117 (558)
                      .|++.+++.|.  .+.|.|+|++|++|++++..|.+||||++++.+.              +++|+++++|+||+|||+|
T Consensus         6 ~G~i~~~l~y~--~~~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T 1rh8_A            6 TGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             CCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             ceEEEEEEEEc--CCEEEEEEEEecCCCCCCCCCCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCCCEE
Confidence            57788999998  7899999999999999999999999999999762              4789999999999999999


Q ss_pred             EEe-eccCC-CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCC
Q 008661          118 NIP-ISTWD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIK  171 (558)
Q Consensus       118 ~F~-V~~~e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~  171 (558)
                      .|. +...+ ....|.|+|||+|.++ +++||++.|+|..+..+.....||+|.+..
T Consensus        84 ~f~~v~~~~l~~~~l~i~V~d~d~~~~~~~lG~~~i~l~~l~~~~~~~~W~~L~~~~  140 (142)
T 1rh8_A           84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQT  140 (142)
T ss_dssp             EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCCC
T ss_pred             EECCcCHHHccCCEEEEEEEECCCCCCCceEEEEEEeccccccCCCCCeEEECCccC
Confidence            997 54311 3569999999999997 899999999999998777789999998643

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.83  E-value=1.5e-20  Score=170.64  Aligned_cols=121  Identities=24%  Similarity=0.325  Sum_probs=105.5

Q ss_pred             CCCCCceeEeeecCCceEEEEEEEEecCCCCC-CCC------CCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEE
Q 008661           50 SPQPGNWFSVDVKEPVAYARVEVVEASDMKPS-DLN------GLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNI  119 (558)
Q Consensus        50 s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~-D~~------G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F  119 (558)
                      ...|+++|++.|.+..+.|.|+|++|++|+.+ +.+      +.+||||+|++.+   .+++|+++++|+||+|||+|.|
T Consensus        10 ~~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~~d~~g~~~~~~~~dpyv~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f   89 (147)
T 2enp_A           10 YQLGMLHFSTQYDLLHNHLTVRVIEARDLPPPISHDGSRQDMAHSNPYVKICLLPDQKNSKQTGVKRKTQKPVFEERYTF   89 (147)
T ss_dssp             CCCCEEEEEEEEETTTTEEEEEEEEEECCCCSCSSCCSSCTTCCCCCEEEEEEETCCSSCEECCCCCSCSSCCCCBCCEE
T ss_pred             CcceEEEEEEEEcCCCCEEEEEEEEEeCCCCccccccccccCCCCCcEEEEEEEeCCCcceEeecccCCCCCeEeeeEEE
Confidence            34678999999999999999999999999984 443      5899999999974   5789999999999999999999


Q ss_pred             eeccCC-CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          120 PISTWD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       120 ~V~~~e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      .+...+ ....|.|+|||+|.++ +++||++.|+|.++........|+.|+++
T Consensus        90 ~v~~~~l~~~~L~~~V~d~d~~~~~~~iG~~~i~l~~l~~~~~~~~w~~L~~~  142 (147)
T 2enp_A           90 EIPFLEAQRRTLLLTVVDFDKFSRHCVIGKVSVPLCEVDLVKGGHWWKALIPS  142 (147)
T ss_dssp             CCCHHHHHHSEEEEEEECCSTTCCSCCCEEEEEETTTSCTTTCCCEEECCBCC
T ss_pred             EeChHHhccCEEEEEEEECCCCcCCcEEEEEEEechhcCCCCCccEEEEeecC
Confidence            987422 2358999999999997 89999999999999887777899999864

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=99.82  E-value=3.2e-20  Score=173.80  Aligned_cols=115  Identities=22%  Similarity=0.207  Sum_probs=103.2

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCC-CCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDL-NGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~-~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      .|.+.+++.|  ..+.|.|+|++|++|+++|. .|.+||||+|++.+     .+++|+++++|+||+|||+|.|.+..  
T Consensus        18 ~G~l~~~l~y--~~~~L~V~v~~a~~L~~~d~~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~--   93 (171)
T 2q3x_A           18 MGDIQIGMED--KKGQLEVEVIRARSLTQKPGSKSTPAPYVKVYLLENGACIAKKKTRIARKTLDPLYQQSLVFDESP--   93 (171)
T ss_dssp             CCEEEEEEEE--ETTEEEEEEEEEESCCCCC---CCCEEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEECSSCC--
T ss_pred             ccEEEEEEEE--CCCEEEEEEEEeeCCCCCCcCCCCCCceEEEEEECCCccccceeCccCCCCCCCCCCcEEEEEecC--
Confidence            5788999999  68999999999999999995 79999999999965     37899999999999999999999864  


Q ss_pred             CCceEEEEEe-ecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          126 SPNVLVIEVR-DKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       126 ~~~tL~V~V~-D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      ....|.|+|| |+|.++ +++||++.|+|.++..+.....||+|.+.
T Consensus        94 ~~~~L~~~V~~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~W~~L~~~  140 (171)
T 2q3x_A           94 QGKVLQVIVWGDYGRMDHKCFMGVAQILLEELDLSSMVIGWYKLFPP  140 (171)
T ss_dssp             TTEEEEEEEEEECSTTCSSEEEEEEEECGGGSCTTSCEEEEEECBCG
T ss_pred             CCCEEEEEEEEcCCCCCCCCEEEEEEEEHHHcccCCCcceeEECCCc
Confidence            3579999999 999998 89999999999999888889999999874

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.82  E-value=4.1e-20  Score=164.63  Aligned_cols=105  Identities=26%  Similarity=0.387  Sum_probs=94.2

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      .|++.+++.|....+.|.|+|++|++|+.++..|.+||||++++.+     .+++|+++++|+||+|||+|.|.+...+ 
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~~~~~t~nP~wne~f~f~v~~~~l   81 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYKDKRVEKKKTVTKKRNLNPIFNESFAFDIPTEKL   81 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEETTEEEEEEECCCCSSCSSCEEEEEEEEECCGGGG
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeCCCccceEeCccccCCCCCcCcceEEEECChhhc
Confidence            3678899999999999999999999999999999999999999964     4789999999999999999999987532 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEeccccc
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLR  156 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~  156 (558)
                      ....|.|+|||+|.++ +++||++.|+|..+.
T Consensus        82 ~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~  113 (138)
T 3n5a_A           82 RETTIIITVMDKDKLSRNDVIGKIYLSWKSGP  113 (138)
T ss_dssp             GGEEEEEEEEECCSSSCCEEEEEEEESSSSCH
T ss_pred             CceEEEEEEEECCCCCCCcEEEEEEEccccCC
Confidence            2358999999999997 999999999999753

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.82  E-value=6.8e-20  Score=168.56  Aligned_cols=121  Identities=25%  Similarity=0.363  Sum_probs=104.8

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      ..|++.++|.|.+..+.|.|+|++|++|+.++..|.+||||++++.+     .+++|+++++|+||+|||+|.|.+...+
T Consensus        10 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~   89 (159)
T 1tjx_A           10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQ   89 (159)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             cCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeCCceeceeeCceecCCCCCcccceEEEEcCHHH
Confidence            35789999999999999999999999999999999999999999964     4789999999999999999999987432


Q ss_pred             C-CceEEEEEeecCCCC-CCccEEEEEecccc------------cCCCceeeeeecCCCC
Q 008661          126 S-PNVLVIEVRDKDHFV-DDTLGDCTINISDL------------RDGQRHDMWIPLQNIK  171 (558)
Q Consensus       126 ~-~~tL~V~V~D~D~~s-DDfIGev~IpL~eL------------~~~~~~e~W~~L~~k~  171 (558)
                      . ...|.|+|||+|.++ +++||++.|+|..+            ..+.....|++|.+..
T Consensus        90 l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~~~  149 (159)
T 1tjx_A           90 IQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVEE  149 (159)
T ss_dssp             GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCHH
T ss_pred             hCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcCcc
Confidence            2 458999999999997 99999999999964            2345678899998643

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=99.82  E-value=1e-19  Score=162.24  Aligned_cols=114  Identities=19%  Similarity=0.322  Sum_probs=98.8

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC--eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP--YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp--~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-  141 (558)
                      ...|+|+|++|++|+++|..|.+||||++++.+  ..++|+++++|+||+|||+|.|.+...   ..|.|+|||+|.++ 
T Consensus         4 ~~~L~V~v~~a~~L~~~d~~g~sDpyv~v~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~---~~l~~~v~d~d~~~~   80 (132)
T 3pyc_A            4 FIKIRLTVLCAKNLAKKDFFRLPDPFAKIVVDGSGQCHSTDTVKNTLDPKWNQHYDLYVGKT---DSITISVWNHKKIHK   80 (132)
T ss_dssp             EEEEEEEEEEEESCCCCSTTCCCCEEEEEEETTTCCEEECCCCSSCSSCEEEEEEEEEEETT---CCEEEEEEEGGGTTS
T ss_pred             eEEEEEEEEEeECCCCCCCCCCcCeEEEEEECCCCceEECCccCCCCCCCccCEEEEEeCCC---CEEEEEEEECCCCCC
Confidence            467999999999999999999999999999975  789999999999999999999999752   35999999999886 


Q ss_pred             ---CCccEEEEEecccc-cCCCceeeeeecCCC-------CceEEEEEEEE
Q 008661          142 ---DDTLGDCTINISDL-RDGQRHDMWIPLQNI-------KIGRLHLAITV  181 (558)
Q Consensus       142 ---DDfIGev~IpL~eL-~~~~~~e~W~~L~~k-------~~GeL~LsL~y  181 (558)
                         |++||++.|+|..+ ........|++|...       ..|+|+|+|++
T Consensus        81 ~~~d~~lG~~~i~l~~l~~~~~~~~~~~~L~~~~~~~~~~~~G~i~v~l~~  131 (132)
T 3pyc_A           81 KQGAGFLGCVRLLSNAISRLKDTGYQRLDLCKLNPSDTDAVRGQIVVSLQT  131 (132)
T ss_dssp             STTTTEEEEEEECHHHHHHHTTSCCEEEECBCSSTTCCCCCCSEEEEEEEE
T ss_pred             CCCCCceEEEEEeHHHhhcccccCcEEEeeeecCCCCCCceeEEEEEEEEc
Confidence               68999999999988 333445678998753       37999999875

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.81  E-value=1.4e-19  Score=167.86  Aligned_cols=116  Identities=28%  Similarity=0.403  Sum_probs=100.6

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      ..|++.+++.|....+.|.|+|++|++|+.++.+|.+||||++++.+     .+++|+++++|+||+|||+|.|.+...+
T Consensus        22 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  101 (166)
T 2cm5_A           22 ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSD  101 (166)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGG
T ss_pred             ccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECCCCccceEeCCcccCCCCCcccceEEEEcchHh
Confidence            45789999999999999999999999999999999999999999976     6889999999999999999999987432


Q ss_pred             -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                       ....|.|+|||+|.++ +++||++.|+|..+.  .....|++|.
T Consensus       102 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~--~~~~~W~~l~  144 (166)
T 2cm5_A          102 LAKKSLDISVWDYDIGKSNDYIGGCQLGISAKG--ERLKHWYECL  144 (166)
T ss_dssp             GGGCEEEEEEEECCSSSCCEEEEEEEEETTCCH--HHHHHHHHHH
T ss_pred             cCCCEEEEEEEECCCCCCCcEEEeEEEecccCC--chhHHHHHHH
Confidence             2469999999999997 899999999999863  2334455554

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.80  E-value=1e-19  Score=166.13  Aligned_cols=116  Identities=21%  Similarity=0.277  Sum_probs=94.1

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS  126 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~  126 (558)
                      .|.+.+++.|.+..+.|.|+|++|++|+.++..|.+||||++++.+     .+++|+++++|+||+|||+|.|.+...+.
T Consensus        16 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l   95 (153)
T 1w15_A           16 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESL   95 (153)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSS
T ss_pred             ccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEeCCeEeceEecCcccCCCCCeecceEEEECCHHHh
Confidence            5788999999999999999999999999999999999999999943     26799999999999999999999875332


Q ss_pred             -CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          127 -PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       127 -~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                       ...|.|+|||+|.++ +++||++.|+|..  .+.....|++|..
T Consensus        96 ~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~--~~~~~~~W~~l~~  138 (153)
T 1w15_A           96 EEISVEFLVLDSERGSRNEVIGRLVLGATA--EGSGGGHWKEICD  138 (153)
T ss_dssp             TTEEEEEEEEECCTTSCCEEEEEEEESTTC--CSHHHHHHHHHHH
T ss_pred             CceEEEEEEEeCCCCCCCcEEEEEEECCCC--CchHHHHHHHHHh
Confidence             368999999999997 9999999999998  2334455666543

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=99.79  E-value=3e-19  Score=168.76  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=100.9

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-  141 (558)
                      ...+.|+|+|++|++|+..+..+.+||||+|++++.+++|+++++|+||+|||+|.|.+..   ...|.|+|||+|.++ 
T Consensus        33 ~~~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~~~~~kT~v~~~tlnP~Wne~f~f~v~~---~~~L~~~V~D~d~~~~  109 (173)
T 2nq3_A           33 TMKSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKS  109 (173)
T ss_dssp             SCCEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSC
T ss_pred             CCceEEEEEEEEeECCCCcccCCCCCeEEEEEECCEEeEccccCCCCCCeECCEEEEEeCC---CCEEEEEEEECCCCCC
Confidence            3568899999999999944434459999999999999999999999999999999999853   679999999999997 


Q ss_pred             CCccEEEEEecccccCCC-----ceeeeeecCCC-----CceEEEEEEEEEec
Q 008661          142 DDTLGDCTINISDLRDGQ-----RHDMWIPLQNI-----KIGRLHLAITVLEE  184 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~~-----~~e~W~~L~~k-----~~GeL~LsL~y~p~  184 (558)
                      +++||++.|+|.++..+.     ....|++|...     ..|+|+|.|+|++.
T Consensus       110 dd~lG~~~i~l~~l~~~~~~~~~~~~~~~~L~~~~~~~~~~G~L~v~l~~l~~  162 (173)
T 2nq3_A          110 DVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQL  162 (173)
T ss_dssp             CEEEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEEC
T ss_pred             CceEEEEEEEHHHhcccCCCCcceeEEEEECccCCCCCcccEEEEEEEeeeec
Confidence            899999999999986432     23679999753     46999999999865

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=99.72  E-value=2.1e-17  Score=177.55  Aligned_cols=119  Identities=27%  Similarity=0.482  Sum_probs=106.6

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-  141 (558)
                      ...+.|+|+|++|++|+++|..|.+||||++++++.+++|+++++|+||+|||+|.|.+.. .....|.|+|||+|.++ 
T Consensus       384 ~~~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~~~~~T~~~~~t~nP~w~e~f~f~~~~-~~~~~l~~~v~d~d~~~~  462 (510)
T 3jzy_A          384 SGIGRLMVHVIEATELKACKPNGKSNPYCEISMGSQSYTTRTIQDTLNPKWNFNCQFFIKD-LYQDVLCLTLFDRDQFSP  462 (510)
T ss_dssp             --CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEESC-TTTCEEEEEEEECCSSSS
T ss_pred             CCCceEEEEeceeecCCCCCCCCCCCeEEEEEECCeeccCCccCCCCCCccCceEEEEecC-CCCCEEEEEEEeCCCCCC
Confidence            3568999999999999999999999999999999999999999999999999999999974 34568999999999998 


Q ss_pred             CCccEEEEEecccccCCCc----eeeeeecCCCCceEEEEEEEEE
Q 008661          142 DDTLGDCTINISDLRDGQR----HDMWIPLQNIKIGRLHLAITVL  182 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~~~----~e~W~~L~~k~~GeL~LsL~y~  182 (558)
                      |++||++.++|.++..+..    ...|++|.+...|+|+|.+.+.
T Consensus       463 ~d~lG~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~G~i~l~~~l~  507 (510)
T 3jzy_A          463 DDFLGRTEIPVAKIRTEQESKGPMTRRLLLHEVPTGEVWVRFDLQ  507 (510)
T ss_dssp             CCEEEEEEEEHHHHHHHHHHHCSCCEEEECBSSSSCEEEEEEEEE
T ss_pred             CCceEEEEEEHHHhccccCCCCceeeeecCCCCCCceEEEEEEEE
Confidence            9999999999999876543    7789999988899999988764

>2r83_A Synaptotagmin-1; C2A-C2B, exocytosis, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal-binding palmitate; 2.70A {Homo sapiens} SCOP: b.7.1.2

Probab=99.70  E-value=9.3e-17  Score=159.88  Aligned_cols=119  Identities=25%  Similarity=0.363  Sum_probs=102.7

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS  126 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~  126 (558)
                      .|.+.+++.|.+..+.|.|.|++|++|+.++..|.+||||++++.+     .+++|+++++|+||+|||+|.|.+...+.
T Consensus       136 ~G~i~l~l~~~p~~~~l~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~l  215 (284)
T 2r83_A          136 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI  215 (284)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCTTTG
T ss_pred             cccEEEEEEecCcCCceEEEEEEeECCCCcCCCCCcCeEEEEEEEeCCcEeeeeccceecCCCCCEEceeEEEeCCHHHh
Confidence            5678899999999999999999999999999999999999999953     46799999999999999999999875332


Q ss_pred             -CceEEEEEeecCCCC-CCccEEEEEeccccc------------CCCceeeeeecCCC
Q 008661          127 -PNVLVIEVRDKDHFV-DDTLGDCTINISDLR------------DGQRHDMWIPLQNI  170 (558)
Q Consensus       127 -~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~------------~~~~~e~W~~L~~k  170 (558)
                       ...|.|+|||+|.++ +++||++.|+|..+.            .+.....|++|.+.
T Consensus       216 ~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~~~~~~~~~~~~W~~L~~~  273 (284)
T 2r83_A          216 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  273 (284)
T ss_dssp             GGEEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTSCEEEEEECBCH
T ss_pred             CceEEEEEEEeCCCCCCCcEEEEEEECCCCCCcHHHHHHHHHHCCCCchheeeecCCc
Confidence             347999999999997 999999999998632            23456789999863

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=99.68  E-value=2.1e-16  Score=173.61  Aligned_cols=172  Identities=19%  Similarity=0.186  Sum_probs=124.9

Q ss_pred             eeeeccCCCCCccCCccHHHHHHHHHHHHHHhcccc-----C--ceeEeeccccCCC----CC--CceeEeeecCCceEE
Q 008661            2 TVKPIFTHGLDVTEFPGIAGWLDKLLSIAFEQTLVE-----P--NMLVVDVDKFASP----QP--GNWFSVDVKEPVAYA   68 (558)
Q Consensus         2 tlkPl~t~G~DVm~iPGLs~fl~~lI~~al~~~lV~-----P--n~l~Ipl~k~~s~----~~--~l~fSL~Yd~~~G~L   68 (558)
                      ++.|+..+-   ...+-....|+..|...+.+.-.+     |  |-. .++......    .+  ...-...-....+.|
T Consensus       321 ~l~PI~~Lv---~~~~~kr~nLk~Ai~~Yl~e~~~c~~C~~PC~nn~-~~l~g~~C~C~C~~~~~t~~~~C~~~~~~~~L  396 (540)
T 3nsj_A          321 SLEPLHTLL---EEQNPKREALRQAISHYIMSRARWQNCSRPCRSGQ-HKSSHDSCQCECQDSKVTNQDCCPRQRGLAHL  396 (540)
T ss_dssp             EEEEGGGGS---CTTCTHHHHHHHHHHHHHHHTCBCCCTTSCCBTTE-EECSSCTTCEEESCTTTBCGGGCBSSTTEEEE
T ss_pred             EEEEHHHhc---CCcHHHHHHHHHHHHHHHHhcCchhhhcccccCCC-ccCCCCceEeeCCCCCCcccccccccCcccEE
Confidence            466772221   113566778888888888777555     4  222 123211110    11  000011122347899


Q ss_pred             EEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCccEE
Q 008661           69 RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGD  147 (558)
Q Consensus        69 ~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfIGe  147 (558)
                      +|+|++|++|+. |..|.+||||+|+++..+++|+++++++||+|||+|.|.+......+.|.|+|||+|.++ ||+||.
T Consensus       397 ~V~V~~A~~L~~-D~~g~sDPYV~v~l~~~~~kTkvik~tlNP~Wne~f~f~~~~~~~~~~L~~~V~D~D~~~~dD~LG~  475 (540)
T 3nsj_A          397 VVSNFRAEHLWG-DYTTATDAYLKVFFGGQEFRTGVVWNNNNPRWTDKMDFENVLLSTGGPLRVQVWDADYGWDDDLLGS  475 (540)
T ss_dssp             EEEEEEEESCCC-SSCSCCCEEEEEEETTEEEECCCBCSCSSCBCCCCEEEEEEETTTCCCEEEEEEECCSSSCCEEEEE
T ss_pred             EEEEEEccCCCc-ccCCCcCeEEEEEECCEeeeeeeecCCCCCCCCeEEEEEEecCCCCCEEEEEEEECCCCCCCCEEEE
Confidence            999999999998 999999999999999989999999999999999999998754345678999999999997 899999


Q ss_pred             EEEecccccCCCceeeeeecCCCCceEEEEEEEEEecc
Q 008661          148 CTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLEES  185 (558)
Q Consensus       148 v~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p~~  185 (558)
                      +.++|..    +..+.|++|.   .|.|+++++..-.+
T Consensus       476 ~~~~L~~----g~~~~~~~l~---~G~l~~~~~~~c~p  506 (540)
T 3nsj_A          476 CDRSPHS----GFHEVTCELN---HGRVKFSYHAKCLP  506 (540)
T ss_dssp             EEECCCS----EEEEEEEECS---SSEEEEEEEEEECT
T ss_pred             EEEEeeC----CcEEEEEEcC---CeEEEEEEEEEECC
Confidence            9999982    3478899986   59999988865443

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.64  E-value=1.1e-15  Score=137.78  Aligned_cols=87  Identities=21%  Similarity=0.302  Sum_probs=72.8

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-
Q 008661           64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVik-kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-  141 (558)
                      .++.|+|+|++|++|+.   .|.+||||+++  .+..+|++++ +|+||+|||+|.|.+..  ....|.|+|||+| ++ 
T Consensus         3 ~~~~L~V~V~~A~~l~~---~g~~DPYv~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~   74 (131)
T 2cjt_A            3 VMSLLCVGVKKAKFDGA---QEKFNTYVTLK--VQNVKSTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIW   74 (131)
T ss_dssp             CCEEEEEEEEEEECSSC---GGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEEECC--CSSEEEEEEEECC-SSC
T ss_pred             cceEEEEEEEEeECCCC---CCCcCeEEEEE--ecCEEEeEecCCCCCceECCEEEEEEeC--CCCeEEEEEEECC-CCC
Confidence            35789999999998853   68899999999  3344565554 79999999999999985  3457999999999 66 


Q ss_pred             CCccEEEEEecccccCC
Q 008661          142 DDTLGDCTINISDLRDG  158 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~  158 (558)
                      |++||++.|+|.++...
T Consensus        75 dd~iG~~~i~l~~l~~~   91 (131)
T 2cjt_A           75 DTMVGTVWIPLRTIRQS   91 (131)
T ss_dssp             EEEEEEEEEEGGGSCBC
T ss_pred             CCeEEEEEEEHHHhhhc
Confidence            99999999999998654

>1dqv_A Synaptotagmin III; beta sandwich, calcium ION, C2 domain, endocytosis/exocytosis complex; 3.20A {Rattus rattus} SCOP: b.7.1.2 b.7.1.2 PDB: 3hn8_A

Probab=99.63  E-value=1e-16  Score=161.82  Aligned_cols=119  Identities=24%  Similarity=0.373  Sum_probs=102.1

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      ..|.+.+++.|.+..+.|.|+|++|++|+++|..|.+||||++++.+     .+++|+++++|+||+|||+|.|.+....
T Consensus       137 ~~G~i~vsl~y~~~~~~l~v~v~~a~~L~~~d~~g~~Dpyv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~  216 (296)
T 1dqv_A          137 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES  216 (296)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred             ccceEEEEEEeccccceeEEEEEEeecCCccCCCCCCCcEEEEEEEeCCcCccceecceecCCCCCeECceEEEEcCHHH
Confidence            35788899999999999999999999999999999999999999963     5789999999999999999999987532


Q ss_pred             C-CceEEEEEeecCCCC-CCccEEEEEecccccC-------------CCceeeeeecCC
Q 008661          126 S-PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD-------------GQRHDMWIPLQN  169 (558)
Q Consensus       126 ~-~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~-------------~~~~e~W~~L~~  169 (558)
                      . ...|.|+|||+|.++ +++||.+.|+|..+..             +.....|+.|..
T Consensus       217 l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~~W~~~~~~~~~~~~~w~~L~~  275 (296)
T 1dqv_A          217 VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLVE  275 (296)
T ss_dssp             GGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCBB
T ss_pred             ccCcEEEEEEEeCCCCCCCceEEEEEECCccCCchhHHHHHHHHhCCCCceeEeeeccC
Confidence            2 347999999999997 9999999999997642             334567777765

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=99.61  E-value=2e-15  Score=139.42  Aligned_cols=115  Identities=16%  Similarity=0.230  Sum_probs=101.5

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCccceEEEEeeccC-CCCceEEEEEeecCCCC-CC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTW-DSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVik-kTlNPvWnEtF~F~V~~~-e~~~tL~V~V~D~D~~s-DD  143 (558)
                      .|+|.|.+|.+|+     |.+|||+++.+...+++|++++ +++||+|||.|.|.+... +....|.|+|||+++++ +.
T Consensus        22 sL~V~l~~a~~Lp-----g~~Dp~akv~FRg~k~kTkvi~~~~~npvfnE~F~wpl~~~ld~~e~L~v~V~d~~~v~~nr   96 (144)
T 3l9b_A           22 ALIVHLKTVSELR-----GRADRIAKVTFRGQSFYSRVLENCEDVADFDETFRWPVASSIDRNEVLEIQIFNYSKVFSNK   96 (144)
T ss_dssp             EEEEEEEEEESCC-----SCEEEEEEEEETTEEEECCCEEEECSCEEEEEEEEEEESSCCCTTCEEEEEEEEECTTSCCE
T ss_pred             EEEEEEEEecCCC-----CCCCCeEEEEEeccceeeEEeccCCCCceEcceEEecCCCCCCCCCEEEEEEEECccccCCC
Confidence            5899999999997     5899999999999999999998 699999999999998842 35679999999999998 99


Q ss_pred             ccEEEEEecccccCCCceeeeeecCCCC----ceEEEEEEEEEeccC
Q 008661          144 TLGDCTINISDLRDGQRHDMWIPLQNIK----IGRLHLAITVLEESA  186 (558)
Q Consensus       144 fIGev~IpL~eL~~~~~~e~W~~L~~k~----~GeL~LsL~y~p~~~  186 (558)
                      +||++.++|.++...+....+.+|.+..    .++|+|.|+|.+..+
T Consensus        97 lIG~~~i~Lq~lv~~~~l~l~~~LvD~n~~~~~a~I~l~l~Y~pp~g  143 (144)
T 3l9b_A           97 LIGTFRMVLQKVVEENRVEVSDTLIDDNNAIIKTSLSMEVRYQAADG  143 (144)
T ss_dssp             EEEEEEEESHHHHHHSEEEEEEEEECTTSCEEEEEEEEEEEEEETTC
T ss_pred             EEEEEEEEhHHhccCCeEEEeecccCCCCCccccEEEEEEEecCCCC
Confidence            9999999999998887777787776532    389999999999754

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=99.59  E-value=3.9e-15  Score=140.10  Aligned_cols=87  Identities=21%  Similarity=0.286  Sum_probs=73.7

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-
Q 008661           64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVik-kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-  141 (558)
                      ..+.|+|+|++|++|+   ..+.+||||+++  .+..+|++++ +++||+|||+|.|.+..  ....|.|+|||+| ++ 
T Consensus        12 ~~~~L~V~V~~A~~l~---~~g~~DPYV~v~--~~~~kt~~~~~~t~nP~WnE~f~f~v~~--~~~~L~~~V~D~d-~~~   83 (167)
T 2cjs_A           12 ILSLLCVGVKKAKFDG---AQEKFNTYVTLK--VQNVESTTIAVRGSQPSWEQDFMFEINR--LDLGLTVEVWNKG-LIW   83 (167)
T ss_dssp             CCCEEEEEEEEEECSS---CGGGCEEEEEEE--ETTEEEECCCEESSSCEEEEEEEEECCC--TTSEEEEEEEECC-SSC
T ss_pred             ceEEEEEEEEEEECCC---CCCCCCeEEEEE--ecceEEEEecCCCCCCCCCCEEEEEeeC--CCCEEEEEEEECC-CCC
Confidence            3679999999999884   368899999999  3345677665 79999999999999985  3558999999999 66 


Q ss_pred             CCccEEEEEecccccCC
Q 008661          142 DDTLGDCTINISDLRDG  158 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~  158 (558)
                      |++||++.|+|.++...
T Consensus        84 dd~iG~~~i~L~~l~~~  100 (167)
T 2cjs_A           84 DTMVGTVWIPLRTIRQS  100 (167)
T ss_dssp             CEEEEEEEEEGGGSCBC
T ss_pred             CceEEEEEEEHHHhccc
Confidence            99999999999998654

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=99.56  E-value=4.6e-15  Score=168.27  Aligned_cols=112  Identities=25%  Similarity=0.431  Sum_probs=99.7

Q ss_pred             CCceEEEEEEEEecCCCC---CCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEee
Q 008661           63 EPVAYARVEVVEASDMKP---SDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRD  136 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~---~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D  136 (558)
                      .+.+.|+|+|++|++|+.   +|..|.+||||+|++++   .+++|+++++|+||+|||+|.|.+... ....|.|+|||
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~~~~k~kTkvik~tlNPvWNEtF~F~v~~~-~~~~L~~~V~D   93 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDPN-QENVLEITLMD   93 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECTT-SCCBCEEEEEE
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecCCCCeEecceEcCCCCCeeeeEEEEEecCC-CCCEEEEEEEE
Confidence            467999999999999998   88889999999999984   688999999999999999999999853 45689999999


Q ss_pred             cCCCCCCccEEEEEecccccCCCceeeeeecCCCCceEEEE
Q 008661          137 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL  177 (558)
Q Consensus       137 ~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~L  177 (558)
                      +|.++|++||++.|+|.++..+.....|++|.+.  +++.|
T Consensus        94 ~D~~~ddfIG~v~I~L~~L~~g~~~~~w~~L~~~--~e~~l  132 (749)
T 1cjy_A           94 ANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQV--TEMVL  132 (749)
T ss_dssp             CCSSSCEEEEEECCBSTTSCTTCCCCEEEEETTT--EEEEE
T ss_pred             CCCCCCceeEEEEEEHHHcCCCCceEEEEecCCC--ceEee
Confidence            9998888999999999999888888999999864  44443

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=99.54  E-value=2.5e-14  Score=159.60  Aligned_cols=168  Identities=17%  Similarity=0.174  Sum_probs=119.1

Q ss_pred             cCCCCCc----cCCccHHHHHHHHHHHH--HHhccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCC
Q 008661            7 FTHGLDV----TEFPGIAGWLDKLLSIA--FEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKP   80 (558)
Q Consensus         7 ~t~G~DV----m~iPGLs~fl~~lI~~a--l~~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~   80 (558)
                      +.+|.-|    +..+|..-+|..-+-..  -..+..-|..+.-+.. .+.+...  ..+ .....+.|+|+|++|++|+.
T Consensus       436 W~~G~QmvAlN~Qt~d~~m~ln~g~F~~ng~~GYvlKP~~lr~~~~-~f~p~~~--~~~-~~~~~~~L~V~Vi~A~~L~~  511 (624)
T 1djx_A          436 WNGGCQIVALNFQTPGPEMDVYLGCFQDNGGCGYVLKPAFLRDPNT-TFNSRAL--TQG-PWWRPERLRVRIISGQQLPK  511 (624)
T ss_dssp             HTTTCCEEEECTTCCSHHHHHHHHHHHSGGGCSEEECCGGGGCTTC-CCCTTSC--CSS-TTCCCEEEEEEEEEEESCCC
T ss_pred             hhccceeeeecccCCchHHhHHHHHhhcCCCCccEECCHHHcCCCC-CcCcccc--ccc-CCccceEEEEEEEEcCCCCc
Confidence            6678777    34478877766555432  2232333443321110 0111000  000 12256899999999999999


Q ss_pred             CCC--CCCCCcEEEEEeCC-----eEEEeeeecCC-CCCccceEEEEeeccCCCCceEEEEEeecCCCC-CCccEEEEEe
Q 008661           81 SDL--NGLADPYVKGQLGP-----YRFRTKTQRKT-LSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DDTLGDCTIN  151 (558)
Q Consensus        81 ~D~--~G~sDPYVkV~Lgp-----~k~KTkVikkT-lNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DDfIGev~Ip  151 (558)
                      ++.  .+.+||||+|.+.+     .+++|++++++ +||+|||+|.|.+... ....|+|+|||+|.++ +++||++.|+
T Consensus       512 ~d~~~~~~~DPYV~V~l~g~~~d~~~~kTkvi~~ng~NP~WnE~f~F~v~~~-el~~L~~~V~D~D~~~~dd~iG~~~ip  590 (624)
T 1djx_A          512 VNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDYDSSSKNDFIGQSTIP  590 (624)
T ss_dssp             CSSCSSSCCCEEEEEEEESSGGGCEEEECCCCTTCSSSCEEEEEEEEEESCG-GGCEEEEEEEECCSSSCCEEEEEEEEE
T ss_pred             ccccccCCCCcEEEEEEecCCCCcceeecccccCCCCCCccCceEEEEEecC-CCCEEEEEEEEcCCCCCCceeEEEEEE
Confidence            884  68999999999943     68899999987 9999999999998753 2358999999999997 9999999999


Q ss_pred             cccccCCCceeeeeecCCC-----CceEEEEEEEEE
Q 008661          152 ISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL  182 (558)
Q Consensus       152 L~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~  182 (558)
                      |..|..+.   .|++|.+.     ..|.|++.+.|.
T Consensus       591 l~~L~~G~---r~v~L~d~~g~~~~~~~L~v~i~~~  623 (624)
T 1djx_A          591 WNSLKQGY---RHVHLLSKNGDQHPSATLFVKISIQ  623 (624)
T ss_dssp             GGGBCCEE---EEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             HHHcCCCc---EEEeCCCCCcCCCCceEEEEEEEEE
Confidence            99997753   58888653     247888888774

>3n5a_A Synaptotagmin-7; calcium/phospholipid binding protein, protein transport; 1.44A {Mus musculus}

Probab=99.51  E-value=6.9e-15  Score=130.75  Aligned_cols=114  Identities=15%  Similarity=0.154  Sum_probs=87.0

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      +|+|.+++.|.+..+.                .+.+||||++++...   +.+..++||.++++|+||+|| |.|.|. +
T Consensus         2 ~G~l~~sl~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~~kT~~~~~t~nP~wn-e~f~f~v~   77 (138)
T 3n5a_A            2 RGELLLSLCYNPSANSIIVNIIKARNLKAMDIGGTSDPYVKVWLMYK---DKRVEKKKTVTKKRNLNPIFN-ESFAFDIP   77 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCBTTTBCCEEEEEEEEET---TEEEEEEECCCCSSCSSCEEE-EEEEEECC
T ss_pred             CcEEEEEEEEcCCCCeEEEEEEEeeCCCCcCCCCCcCeEEEEEEEeC---CCccceEeCccccCCCCCcCc-ceEEEECC
Confidence            5778888777665443                234899999999543   456778999999999999999 999999 6


Q ss_pred             CCCCCCCceEEEEEeccCc--ccc-ceE-EecC-CccccccCccccCCCCCcccceeecC
Q 008661          235 SEKSPKVADNFEPINIEGQ--QET-GIW-VHQP-GSEVAQTWEPRKGKNRRLDTLVRRVP  289 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG~--~e~-Gv~-v~~p-gt~~~~hW~~~l~~~r~~~~q~~~~~  289 (558)
                      ...+....+.++|||++..  ++. |-. +... .....+||.+|+.+|++++++||.+.
T Consensus        78 ~~~l~~~~l~~~V~d~~~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~  137 (138)
T 3n5a_A           78 TEKLRETTIIITVMDKDKLSRNDVIGKIYLSWKSGPGEVKHWKDMIARPRQPVAQWHQLK  137 (138)
T ss_dssp             GGGGGGEEEEEEEEECCSSSCCEEEEEEEESSSSCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             hhhcCceEEEEEEEECCCCCCCcEEEEEEEccccCChHHHHHHHHHhCCCCeEEEEeecC
Confidence            6666678899999999843  333 544 3222 22345899999999999999999763

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=99.49  E-value=2.9e-15  Score=162.27  Aligned_cols=114  Identities=17%  Similarity=0.210  Sum_probs=21.2

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCe-EEEeeeecCC---CCCccceEEEEeeccCCCCceEEEEEee-cCC
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPY-RFRTKTQRKT---LSPKWHEEFNIPISTWDSPNVLVIEVRD-KDH  139 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~-k~KTkVikkT---lNPvWnEtF~F~V~~~e~~~tL~V~V~D-~D~  139 (558)
                      .+.|+|+|++|++|+++|     ||||+++++.. ..||+++++|   +||+|||+|.|.+.+.  ...|.|+||| +|.
T Consensus        10 ~~~L~V~VieAk~L~~~d-----dpYv~v~l~~~~~~kT~v~~kt~~glnP~WnE~F~f~~~~~--~~~L~v~V~d~~d~   82 (483)
T 3bxj_A           10 DNVLKLWIIEARELPPKK-----RYYCELCLDDMLYARTTSKPRSASGDTVFWGEHFEFNNLPA--VRALRLHLYRDSDK   82 (483)
T ss_dssp             EECC--------------------------------------------------CCEECC--------------------
T ss_pred             ccEEEEEEEEcCCcCCCC-----CCeEEEEECCeEEeeeeEEeCCCCCCCCccccEEEEecCCC--ccEEEEEEEecCCc
Confidence            478999999999999876     99999999874 6799999999   9999999999997542  4789999999 452


Q ss_pred             ---CC-CCccEEEEEecccccCCCceeeeeecCCC---------------------------CceEEEEEEEEEecc
Q 008661          140 ---FV-DDTLGDCTINISDLRDGQRHDMWIPLQNI---------------------------KIGRLHLAITVLEES  185 (558)
Q Consensus       140 ---~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k---------------------------~~GeL~LsL~y~p~~  185 (558)
                         ++ +++||.+.|+|..+..+...+.||+|...                           ..|.|+|++.|.+..
T Consensus        83 ~~~~~~d~~lG~v~i~l~~l~~~~~~~~W~~L~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~G~lrL~v~~~~~~  159 (483)
T 3bxj_A           83 KRKKDKAGYVGLVTVPVATLAGRHFTEQWYPVTLPTGSGGSGGMGSGGGGGSGGGSGGKGKGGCPAVRLKARYQTMS  159 (483)
T ss_dssp             ------------------------CCEECC--------------------------------------CEEEEEECC
T ss_pred             cccCCCCceEEEEEEEHHHhcCCCCCCeEEECCCCCCccccccccccccccccccccccCCCCCceEEEEEEeeeee
Confidence               44 99999999999999988888999999531                           247888888887653

>1w15_A Synaptotagmin IV; metal binding protein, endocytosis/exocytosis neurotransmitter release, transmembrane; 1.93A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1w16_A

Probab=99.48  E-value=2.6e-14  Score=130.28  Aligned_cols=116  Identities=15%  Similarity=0.170  Sum_probs=86.7

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+|++.|.+....                .+.+||||++++..   .+++..++||.++++|+||+|| |.|.|. 
T Consensus        15 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v   90 (153)
T 1w15_A           15 GRGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYH---AKKRISKKKTHVKKCTPNAVFN-ELFVFDI   90 (153)
T ss_dssp             -CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEE---TTEEEEEEECCCCCSCSSEEEE-EEEEEEC
T ss_pred             cccEEEEEEEEcCCCCEEEEEEEEeECCCCcCCCCCCCeEEEEEEEe---CCeEeceEecCcccCCCCCeec-ceEEEEC
Confidence            45778888777665433                23479999999944   3556678899999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccC--cccc-ceE-EecC-CccccccCccccCCCCCcccceeecCC
Q 008661          234 SSEKSPKVADNFEPINIEG--QQET-GIW-VHQP-GSEVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG--~~e~-Gv~-v~~p-gt~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                      +..++....+.|+|||++.  .++. |.. +... .....+||.+++.+|++++++||.+-+
T Consensus        91 ~~~~l~~~~l~v~V~d~d~~~~~~~lG~~~i~l~~~~~~~~~W~~l~~~p~~~~~~Wh~L~~  152 (153)
T 1w15_A           91 PCESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  152 (153)
T ss_dssp             CSSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CHHHhCceEEEEEEEeCCCCCCCcEEEEEEECCCCCchHHHHHHHHHhCCCCeeeecccccc
Confidence            6667777899999999984  3333 544 2111 222348999999999999999998754

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=99.46  E-value=9e-14  Score=155.66  Aligned_cols=118  Identities=31%  Similarity=0.507  Sum_probs=100.9

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~  127 (558)
                      +.+.+++.|  ..+.|.|+|++|++|+++|.+|.+||||++++.+     .+.+|+++++|+||.|||+|.|.+...+..
T Consensus       161 g~i~~~~~~--~~~~L~V~v~~a~~L~~~d~~g~sDPyvkv~l~p~~~~~~k~kT~v~~~tlnP~wne~f~f~~~~~~~~  238 (674)
T 3pfq_A          161 GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQLKESDKD  238 (674)
T ss_dssp             CEEEEEEEE--CSSEEEEEEEEEESCCCCSTTSSCCEEEEEEEESCSSCCSCEECCCCSSCSSCEEEEEEEEECCSTTTT
T ss_pred             cccccccee--ccceeeeeeecccccCCCCcccccCcccccccccCccccccccccccccccCCCccceeeeecccCCcc
Confidence            344555555  4688999999999999999999999999999933     578999999999999999999999865556


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCce
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG  173 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~G  173 (558)
                      ..|.|+|||+|.++ |++||.+.++|.++.... ...|+.|.....|
T Consensus       239 ~~L~v~v~d~d~~~~dd~iG~~~i~l~~l~~~~-~~~w~~Lls~~~g  284 (674)
T 3pfq_A          239 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKAG-VDGWFKLLSQEEG  284 (674)
T ss_dssp             CEEEEEEEECCSSSCCEECCBCCCBTTHHHHCC-EEEEEECBCTTGG
T ss_pred             ceeeeEEeecccccccccccccccchhhhccCC-cccceeecccccc
Confidence            68999999999998 999999999999997654 5889999765444

>1tjx_A Similar to synaptotagmini/P65; C2B domain, calcium binding, endocytosis-EX complex; HET: GOL; 1.04A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 1tjm_A* 1uov_A 1uow_A 1k5w_A 2lha_A*

Probab=99.45  E-value=5.9e-14  Score=128.86  Aligned_cols=116  Identities=18%  Similarity=0.212  Sum_probs=87.9

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+|+|.|.+..+.                .+.+||||++++...   +++..++||.++++|+||+|| |.|.|. 
T Consensus        10 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~v   85 (159)
T 1tjx_A           10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQN---GKRLKKKKTTIKKNTLNPYYN-ESFSFEV   85 (159)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEET---TEEEEEEECCCCCSCSSCEEE-EEEEEEC
T ss_pred             cCCeEEEEEEEcCCCCEEEEEEEEeeCCCCccCCCCCCeEEEEEEEeC---CceeceeeCceecCCCCCccc-ceEEEEc
Confidence            45777777777665433                234899999999543   556678999999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccCc--ccc-ceE-EecCCc-cccccCccccCCCCCcccceeecCC
Q 008661          234 SSEKSPKVADNFEPINIEGQ--QET-GIW-VHQPGS-EVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~--~e~-Gv~-v~~pgt-~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                      +..++....+.|+|||++..  ++. |.. +..... ...+||.+|+.+|++++++||.+-.
T Consensus        86 ~~~~l~~~~l~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~w~~l~~~~~~~~~~W~~L~~  147 (159)
T 1tjx_A           86 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV  147 (159)
T ss_dssp             CGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             CHHHhCCcEEEEEEEECCCCCCCceEEEEEECCCCCCcHHHHHHHHHHCCCCeeeeEEECcC
Confidence            56666678899999999853  333 544 322211 2348999999999999999998764

>2cm5_A Rabphilin-3A; protein transport, zinc-finger, Ca2+ binding, metal-binding, synaptic exocytosis, C2A-C2B linker fragment, C2B, zinc, synapse; 1.28A {Rattus norvegicus} SCOP: b.7.1.2 PDB: 2cm6_A 3rpb_A

Probab=99.38  E-value=3.3e-13  Score=124.87  Aligned_cols=116  Identities=11%  Similarity=0.110  Sum_probs=86.4

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+|++.|.+....                .+.+||||++++...   ..+..++||.++++|+||+|| |.|.|. 
T Consensus        22 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~v   97 (166)
T 2cm5_A           22 ERGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPD---MGKKAKHKTQIKKKTLNPEFN-EEFFYDI   97 (166)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC------CCEEECCCCCSCSSCEEE-EEEEEEC
T ss_pred             ccceEEEEEEEECCCCEEEEEEEEeECCCCccCCCCCCcEEEEEEECC---CCccceEeCCcccCCCCCccc-ceEEEEc
Confidence            46888888888765433                234899999999543   344678999999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccCc--ccc-ceE-EecCC-ccccccCccccCCCCCcccceeecCC
Q 008661          234 SSEKSPKVADNFEPINIEGQ--QET-GIW-VHQPG-SEVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~--~e~-Gv~-v~~pg-t~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                      +...+....+.|+|||++..  ++. |.. +.... ....+||.+++.+++.++++||.+-.
T Consensus        98 ~~~~l~~~~L~i~V~d~d~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~~~~Wh~L~~  159 (166)
T 2cm5_A           98 KHSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN  159 (166)
T ss_dssp             CGGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECBC
T ss_pred             chHhcCCCEEEEEEEECCCCCCCcEEEeEEEecccCCchhHHHHHHHhCCCCcceEeeECCC
Confidence            55566678999999999843  333 544 22211 22348999999999999999998863

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=99.19  E-value=4.4e-11  Score=137.90  Aligned_cols=163  Identities=19%  Similarity=0.259  Sum_probs=108.8

Q ss_pred             cCCCCCccCC----ccHHHHHHHHHHH--HHHhccccCceeEeeccccCCCCCCceeEeeecCCceEEEEEEEEecCCCC
Q 008661            7 FTHGLDVTEF----PGIAGWLDKLLSI--AFEQTLVEPNMLVVDVDKFASPQPGNWFSVDVKEPVAYARVEVVEASDMKP   80 (558)
Q Consensus         7 ~t~G~DVm~i----PGLs~fl~~lI~~--al~~~lV~Pn~l~Ipl~k~~s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~   80 (558)
                      +.+|.-|.++    +|+.=+|..-+-.  .-.++.+-|..+--+. ..+.|....  .+. ......|.|+|++|++|+.
T Consensus       664 W~~G~QmVALN~QT~d~~m~lN~g~F~~nG~cGYVLKP~~lr~~~-~~f~p~~~~--~~~-~~~~~~L~V~Visaq~L~~  739 (885)
T 3ohm_B          664 WNVGCQLVALNFQTLDVAMQLNAGVFEYNGRSGYLLKPEFMRRPD-KSFDPFTEV--IVD-GIVANALRVKVISGQFLSD  739 (885)
T ss_dssp             HTTTCSEECBCTTCCSHHHHHHHHHHTTGGGCSEEECCGGGTCTT-CCCCTTCSS--CCT-TCCCEEEEEEEEEEESCCS
T ss_pred             cccCceeeeecCCCCCcccchhhhhhccCCceeeeecCHHHcCCC-cCcCCCcCc--ccC-cccceEEEEEEEEeccCcc
Confidence            5667766665    5777666655532  2233345554442111 111110000  000 0123589999999999975


Q ss_pred             CCCCCCCCcEEEEEeCC------eEEEeeeecC-CCCCccce-EEEEe-eccCCCCceEEEEEeecCCCCCCccEEEEEe
Q 008661           81 SDLNGLADPYVKGQLGP------YRFRTKTQRK-TLSPKWHE-EFNIP-ISTWDSPNVLVIEVRDKDHFVDDTLGDCTIN  151 (558)
Q Consensus        81 ~D~~G~sDPYVkV~Lgp------~k~KTkVikk-TlNPvWnE-tF~F~-V~~~e~~~tL~V~V~D~D~~sDDfIGev~Ip  151 (558)
                      .    .+||||+|.+.+      .+++|+++++ ++||+||| +|.|. |... ....|+|+|||+|   ++|||++.||
T Consensus       740 ~----~~DPYV~V~l~g~p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~p-ela~Lrf~V~D~d---ddfiG~~~lp  811 (885)
T 3ohm_B          740 R----KVGIYVEVDMFGLPVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLP-TLASLRIAAFEEG---GKFVGHRILP  811 (885)
T ss_dssp             S----CCCEEEEEEEESSTTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCG-GGCEEEEEEEETT---TEEEEEEEEE
T ss_pred             c----CCCcEEEEEEeCCCcccccceeeEEeeCCCcCCeeccceeEEeeEEcC-CcCEEEEEEEcCC---ccEEeeEEEE
Confidence            3    589999999953      3579999975 69999999 69998 6532 2348999999987   8899999999


Q ss_pred             cccccCCCceeeeeecCCC-----CceEEEEEEEEEec
Q 008661          152 ISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEE  184 (558)
Q Consensus       152 L~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~  184 (558)
                      |..|..+.+   +++|.+.     ..|.|.|.+.+..-
T Consensus       812 L~~L~~GyR---~vpL~~~~g~~l~~atLfv~i~~~~~  846 (885)
T 3ohm_B          812 VSAIRSGYH---YVCLRNEANQPLCLPALLIYTEASDY  846 (885)
T ss_dssp             TTTCCCEEE---EEEEECTTSCEEEEEEEEEEEEEEEC
T ss_pred             HHHcCCCce---EEEecCCCCCccCceEEEEEEEEEec
Confidence            999987654   5666542     35889999988753

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=99.17  E-value=7.2e-11  Score=135.20  Aligned_cols=108  Identities=21%  Similarity=0.321  Sum_probs=84.9

Q ss_pred             CceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEee-eec-CCCCCccce-EEEE-eeccCCCCceEEEE
Q 008661           64 PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTK-TQR-KTLSPKWHE-EFNI-PISTWDSPNVLVIE  133 (558)
Q Consensus        64 ~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTk-Vik-kTlNPvWnE-tF~F-~V~~~e~~~tL~V~  133 (558)
                      ..+.|.|+|++|++|+.    +.+||||+|.+..      .+++|+ +++ +++||+||| +|.| .+...+ ...|+|.
T Consensus       676 ~~~~L~V~Visa~~L~~----~~~DPYV~V~l~g~p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~e-l~~Lr~~  750 (799)
T 2zkm_X          676 VATTLSITVISGQFLSE----RSVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPE-LASLRVA  750 (799)
T ss_dssp             TCEEEEEEEEEEESCCS----SCCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGG-GCEEEEE
T ss_pred             eeeeEEEEEEeccccCc----cCCCcEEEEEEEecCCCcccceeecccccCCCCCCeeecceEEEEEEccCC-ccEEEEE
Confidence            35789999999999975    4689999999932      367999 776 579999999 6999 776422 3489999


Q ss_pred             EeecCCCCCCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEE
Q 008661          134 VRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL  182 (558)
Q Consensus       134 V~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~  182 (558)
                      |||+|   +++||++.|||..|..+.   .|++|.+.     ..+.|.+.+.+.
T Consensus       751 V~D~d---~d~iG~~~ipl~~L~~G~---r~v~L~~~~g~~~~~~~Lfv~i~~~  798 (799)
T 2zkm_X          751 VMEEG---NKFLGHRIIPINALNSGY---HHLCLHSESNMPLTMPALFIFLEMK  798 (799)
T ss_dssp             EEETT---TEEEEEEEEEGGGBCCEE---EEEEEECTTCCEEEEEEEEEEEEEE
T ss_pred             EEEeC---CCccceEeeehhhcCCCc---EEEeccCCCCCCCCceEEEEEEEEE
Confidence            99997   789999999999998764   46777542     236677777663

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=99.16  E-value=1.3e-10  Score=133.12  Aligned_cols=110  Identities=18%  Similarity=0.332  Sum_probs=88.2

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-------eEEEeeeecC-CCCCccceE-EEEe-eccCCCCceEEEEE
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-------YRFRTKTQRK-TLSPKWHEE-FNIP-ISTWDSPNVLVIEV  134 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-------~k~KTkVikk-TlNPvWnEt-F~F~-V~~~e~~~tL~V~V  134 (558)
                      .+.|+|+|++|++|+..    .+||||+|.+..       .+++|+++++ ++||+|||+ |.|. +...+ -..|+|.|
T Consensus       649 ~~~L~V~Visaq~L~~~----~~DPYV~V~l~g~p~d~~~~k~kTkvv~~nglNPvWNE~~F~F~~v~~pe-la~Lrf~V  723 (816)
T 3qr0_A          649 AGTIEIKIISAQFLSDK----QISSYVEVEMYGLPTDTVRKKFKTKIIENNGMDPYYDEKVFVFKKVVLPD-LAVVRIIV  723 (816)
T ss_dssp             CEEEEEEEEEEECCCSS----CCCEEEEEEEESSGGGCEEEEEECCCBCSCSSCCBCCCCCEEEEEESCGG-GCEEEEEE
T ss_pred             ceEEEEEEEEcccCCCC----CCCCeEEEEEeCCCcccccceeeeEEecCCCCCCeEcCceeEEccccCCC-ccEEEEEE
Confidence            47899999999999753    589999999954       5679999885 699999998 9998 65322 35899999


Q ss_pred             eecCCCCCCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEEecc
Q 008661          135 RDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVLEES  185 (558)
Q Consensus       135 ~D~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~p~~  185 (558)
                      ||++   +++||++.|||..|..+.+   +++|.+.     ..+.|.+.+.+....
T Consensus       724 ~D~d---ddfiG~~~ipL~~L~~GyR---~vpL~~~~g~~~~~atLfv~i~~~~~~  773 (816)
T 3qr0_A          724 SEEN---GKFIGHRVMPLDGIKPGYR---HVPLRNESNRPLGLASVFAHIVAKDYV  773 (816)
T ss_dssp             EETT---SCEEEEEEEESTTCCCEEE---EEEEECTTSCEEEEEEEEEEEEEEECC
T ss_pred             EecC---CCeeeEEEEEHHHcCCcce---EEEEeCCCCCCCCceEEEEEEEEEecC
Confidence            9985   7899999999999988754   5677553     237888888876543

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=99.06  E-value=1.8e-09  Score=97.42  Aligned_cols=110  Identities=15%  Similarity=0.321  Sum_probs=87.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeE----EEe-eeecCCCCCccceEEEEeeccCCCCceEEEEEeecCC
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR----FRT-KTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH  139 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k----~KT-kVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~  139 (558)
                      ...|+|.+.++.--+-+......||||.|.+....    .+| .++++|+.|+|||+|.-.+..   .+.|.|.|++...
T Consensus         5 ~~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~~e~g~t~~~K~kT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a~   81 (126)
T 1yrk_A            5 APFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALSTERGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAAE   81 (126)
T ss_dssp             CCEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEEETTEEEEECCSCCBCCCTTCEEEEECCT---TCEEEEEEEEETT
T ss_pred             CccEEeeeccccccccCCccccCCceEEEEeeeeEEcccceeecccCCCCCcCccceEEeeeeC---CEEEEEEEEcCCC
Confidence            35688888666532222234568999999996532    355 778899999999999999986   6799999996554


Q ss_pred             CCCCccEEEEEeccccc-----CCCceeeeeecCCCCceEEEEEEEEE
Q 008661          140 FVDDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVL  182 (558)
Q Consensus       140 ~sDDfIGev~IpL~eL~-----~~~~~e~W~~L~~k~~GeL~LsL~y~  182 (558)
                         +|+..|.|++.+|.     .+...+.|++|++  .|+|++.+.|.
T Consensus        82 ---~fvAn~tV~~edL~~~c~~~~g~~e~WvdLeP--~Gkl~~~i~~~  124 (126)
T 1yrk_A           82 ---EPVSEVTVGVSVLAERCKKNNGKAEFWLDLQP--QAKVLMSVQYF  124 (126)
T ss_dssp             ---EEEEEEEEEHHHHHHHHHTTTTEEEEEEECBS--SCEEEEEEEEE
T ss_pred             ---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEe
Confidence               89999999999997     4556799999995  89999999986

>1wfm_A Synaptotagmin XIII; C2 domain, exocytosis, neurotransmitter release, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=99.02  E-value=1.1e-09  Score=98.55  Aligned_cols=60  Identities=8%  Similarity=0.077  Sum_probs=50.1

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG  252 (558)
                      .+.+||||++++.+.    ....++||.++++|+||+|| |.|.|. +.+++....+.|+|||++.
T Consensus        41 ~g~sDPyv~v~l~~~----~~~~~~kT~v~~~tlnP~wn-E~f~f~v~~~~l~~~~L~~~V~d~d~  101 (138)
T 1wfm_A           41 DGGCDCYVQGSVANR----TGSVEAQTALKKRQLHTTWE-EGLVLPLAEEELPTATLTLTLRTCDR  101 (138)
T ss_dssp             SSCCCEEEEEEEEET----TEEEEEECCCCCCCSSEECS-SCEEEECCTTSSTTCEEEEEEEECCS
T ss_pred             CCCcceEEEEEEEcC----CCcccEecccCcCCCCCcCC-ceEEEEecHHHcCCCEEEEEEEECCC
Confidence            455899999999432    12456899999999999999 999999 7777788899999999984

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=99.02  E-value=2.2e-09  Score=98.18  Aligned_cols=111  Identities=18%  Similarity=0.385  Sum_probs=88.5

Q ss_pred             ceEEEEEEEEecCCCCCC-CCCCCCcEEEEEeCCe----EEEe-eeecCCCCCccceEEEEeeccCCCCceEEEEEeecC
Q 008661           65 VAYARVEVVEASDMKPSD-LNGLADPYVKGQLGPY----RFRT-KTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD  138 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D-~~G~sDPYVkV~Lgp~----k~KT-kVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D  138 (558)
                      ...|+|.+.++.-.+-+. .....||||.|.+...    ..+| .++++|..|+|||+|.-.|..   .+.|.|.|++..
T Consensus         9 ~~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~te~gqtl~~KkkT~~P~Wne~Fd~~V~~---Gr~l~i~Vfh~a   85 (138)
T 2enj_A            9 SPFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVESENGQMYIQKKPTMYPPWDSTFDAHINK---GRVMQIIVKGKN   85 (138)
T ss_dssp             CCCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEEETTEEEEEEEEEEECCCSSSEEEECCCS---SCEEEEEEECSS
T ss_pred             CcceEEEeeccccCCCCCcccccCCceEEEEeeeeeeccCceeecccCCCCCccccceEeeeEEC---CeEEEEEEEcCC
Confidence            356888887765433322 2346899999999652    2677 777889999999999999986   679999999544


Q ss_pred             CCCCCccEEEEEeccccc-----CCCceeeeeecCCCCceEEEEEEEEEe
Q 008661          139 HFVDDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVLE  183 (558)
Q Consensus       139 ~~sDDfIGev~IpL~eL~-----~~~~~e~W~~L~~k~~GeL~LsL~y~p  183 (558)
                      .   +|+..|.|++.+|.     .+...+.|++|++  .|+|++.+.|.-
T Consensus        86 ~---~fVAn~tV~~edL~~~ck~~~g~~e~WvdLeP--~Gkl~v~i~~~~  130 (138)
T 2enj_A           86 V---DLISETTVELYSLAERCRKNNGKTEIWLELKP--QGRMLMNARYFL  130 (138)
T ss_dssp             C---SCCEEEEEESHHHHHHHHHTTTCEEEEEECBS--SCEEEEEEEECC
T ss_pred             C---CeeeEEEEEHHHHHhhhccCCCceEEEEeccc--CcEEEEEEEEEE
Confidence            4   89999999999997     4556799999995  899999999964

>2z0u_A WW domain-containing protein 1; C2 domain, alternative splicing, coiled coil, cytoplasm, phosphorylation, polymorphism, lipid binding protein; 2.20A {Homo sapiens}

Probab=98.97  E-value=1.1e-10  Score=108.00  Aligned_cols=79  Identities=8%  Similarity=-0.068  Sum_probs=59.9

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+++|.|.+....                .+.+||||++++...  .+.+..++||.++++|+||+|| |.|.|. 
T Consensus        28 ~~G~l~~sl~y~~~~~~L~V~Vi~a~~L~~~d~~g~sDPyVkv~l~~~--~~~~~~~~kT~v~~~tlnP~wn-E~F~f~v  104 (155)
T 2z0u_A           28 GATRIQIALKYDEKNKQFAILIIQLSNLSALLQQQDQKVNIRVAVLPC--SESTTCLFRTRPLDASDTLVFN-EVFWVSM  104 (155)
T ss_dssp             CCEEEEEEEEEETTTTEEEEEEEEEECGGGTCCSCCSEEEEEEEEESC--SCHHHHEEECCCEECCSSEEEE-EEEEEEC
T ss_pred             CcEEEEEEEEEcCCCCEEEEEEEEccCcCCcccCCCCCEEEEEEEecC--CCCCccceeCCcCCCCCCCccc-cEEEEEc
Confidence            45777777777654432                234899999999542  2233457899999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccC
Q 008661          234 SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG  252 (558)
                      +.+++....+.|+|||++.
T Consensus       105 ~~~~l~~~~L~~~V~d~d~  123 (155)
T 2z0u_A          105 SYPALHQKTLRVDVCTTDR  123 (155)
T ss_dssp             CHHHHHHCEEEEEEEEECT
T ss_pred             CHHHhCcCEEEEEEEECCC
Confidence            5556667899999999984

>2dmg_A KIAA1228 protein; beta-sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.89  E-value=1e-09  Score=98.36  Aligned_cols=77  Identities=19%  Similarity=0.236  Sum_probs=58.6

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+|++.|.+....                .+ +||||++++...   +++..++||.++++|+||+|| |.|.|. 
T Consensus         9 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g-~dpyv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~v   83 (142)
T 2dmg_A            9 PLGQIQLTIRHSSQRNKLIVVVHACRNLIAFSEDG-SDPYVRMYLLPD---KRRSGRRKTHVSKKTLNPVFD-QSFDFSV   83 (142)
T ss_dssp             SSCEEEEEEEEETTTTEEEEEEEEEECCCCSSTTC-CCEEEEEEEESC---CCSSSCEECCCCCSCSSCEEE-EEEEECC
T ss_pred             CcceEEEEEEEeCCCCEEEEEEEEeECCCCCCCCC-CCeeEEEEEEcC---CCCCCcccCCccCCCCCCCcC-ceEEEEe
Confidence            34667666666544332                34 799999999543   445678899999999999999 999998 


Q ss_pred             CCCCCCCCceEEEEEeccC
Q 008661          234 SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG  252 (558)
                      +.+++....+.|+|||++.
T Consensus        84 ~~~~l~~~~L~i~V~d~d~  102 (142)
T 2dmg_A           84 SLPEVQRRTLDVAVKNSGG  102 (142)
T ss_dssp             CHHHHHHCEEEEEEEECCC
T ss_pred             cHHHhCcCEEEEEEEECCC
Confidence            4455566789999999984

>3fbk_A RGS3, RGP3, regulator of G-protein signaling 3; all beta-sheet fold, structural genomics, PSI-2, protein structure initiative; 2.00A {Homo sapiens} SCOP: b.7.1.0

Probab=98.88  E-value=1.1e-09  Score=100.06  Aligned_cols=106  Identities=12%  Similarity=-0.034  Sum_probs=72.8

Q ss_pred             CceEEEEEEEEEeccCC---------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          171 KIGRLHLAITVLEESAK---------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~---------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      ..|+|.|+|+|.+..+.               .+.+||||++++...   .....++||.++++|+||+|| |.|.|. +
T Consensus        12 ~~G~~~lsL~y~~~~~~L~V~v~~a~~L~~~d~g~~Dpyv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~   87 (153)
T 3fbk_A           12 VQGAGQLRLSIDAQDRVLLLHIIEGKGLISKQPGTCDPYVKISLIPE---DSRLRHQKTQTVPDCRDPAFH-EHFFFPVQ   87 (153)
T ss_dssp             -CCCCEEEEEEEESSSEEEEEEEEEESCCCCSSSCCCEEEEEEEESC---SCCTTCEECCCCTTCSSCEEE-EEEEEECC
T ss_pred             CCCEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCEEEEEEEEcC---CCCccEEeccccCCCCCCccc-cEEEEecc
Confidence            46777788887776544               134799999999543   345577899999999999999 999998 4


Q ss_pred             CCCCCCCceEEEEEeccCcc---cc-ceEEecCCccccccCccccCCCCCcccceeecCC
Q 008661          235 SEKSPKVADNFEPINIEGQQ---ET-GIWVHQPGSEVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG~~---e~-Gv~v~~pgt~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                      ...+.. .+.|+|||++...   +. |-.. -+-.        .+.++..+.++||.+.+
T Consensus        88 ~~~~~~-~L~i~V~d~d~~~~~d~~lG~~~-i~l~--------~l~~~~~~~~~W~~L~~  137 (153)
T 3fbk_A           88 EEDDQK-RLLVTVWNRASQSRQSGLIGCMS-FGVK--------SLLTPDKEISGWYYLLG  137 (153)
T ss_dssp             GGGTTS-EEEEEEEECCSSGGGCEEEEEEE-EEHH--------HHTC--CCEEEEEECBC
T ss_pred             cHHhCC-EEEEEEEeCCCCCCCCcEEEEEE-EEHH--------HhcCCCCccccEEECCC
Confidence            455544 4999999998532   22 4331 1111        14456678889998864

>1ugk_A Synaptotagmin IV, KIAA1342; beta sandwich, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.86  E-value=2.7e-09  Score=95.25  Aligned_cols=76  Identities=16%  Similarity=0.167  Sum_probs=58.3

Q ss_pred             ceEEEEEEEEEeccCC----------------C-CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          172 IGRLHLAITVLEESAK----------------Q-GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l-~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      .|+|+|++.|.+....                . +.+||||++++...   +  ..++||.++++|+||+|| |.|.|. 
T Consensus         8 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~~dpyv~v~~~~~---~--~~~~kT~v~~~t~nP~wn-e~f~f~~   81 (138)
T 1ugk_A            8 LGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE---K--KHKVKTRVLRKTLDPAFD-ETFTFYG   81 (138)
T ss_dssp             CCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT---T--CSEEECCCCSSCSSCEEE-EEEEEEC
T ss_pred             cEEEEEEEEEECCCCEEEEEEEEeeCCCCCCCCCCCCCCEEEEEEecC---C--CceEecCcCcCCCCCcEe-eEEEEcC
Confidence            5677777776554322                1 45899999999542   1  267899999999999999 999994 


Q ss_pred             -CCCCCCCCceEEEEEeccCc
Q 008661          234 -SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 -p~e~l~~v~leveV~D~dG~  253 (558)
                       +.+++....+.|+|||++..
T Consensus        82 v~~~~~~~~~l~i~V~d~d~~  102 (138)
T 1ugk_A           82 IPYTQIQELALHFTILSFDRF  102 (138)
T ss_dssp             CCSTTGGGCEEEEEEEEECSS
T ss_pred             cCHHHhccCEEEEEEEECCCC
Confidence             66777788999999999843

>2chd_A Rabphilin-3A, exophilin-1; C2 domain, C2A, calcium binding, synaptic EXOC metal-binding, protein transport, synapse, transport, zinc-; 1.92A {Rattus norvegicus} PDB: 2k3h_A

Probab=98.86  E-value=8.5e-10  Score=98.86  Aligned_cols=104  Identities=10%  Similarity=0.102  Sum_probs=70.1

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|.+++.|.+....                .+.+||||++++..   ...+..++||.++++++||+|| |.|.|. 
T Consensus        14 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~~   89 (142)
T 2chd_A           14 TLGALEFSLLYDQDNSNLQCTIIRAKGLKPMDSNGLADPYVKLHLLP---GASKSNKLRTKTLRNTRNPVWN-ETLQYHG   89 (142)
T ss_dssp             CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCCTTSCCCEEEEEEEES---CCSGGGEEECCCCCSCSSCEEE-EEEEEES
T ss_pred             ccceEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCCCCEEEEEEEc---CCCCcceeeCCcCCCCCCCcCc-CEEEEcc
Confidence            35777777777544332                23479999999954   2345678899999999999999 899997 


Q ss_pred             CC-CCCCCCceEEEEEeccCc--ccc-ceE-E--ecCCccccccCccccCCC
Q 008661          234 SS-EKSPKVADNFEPINIEGQ--QET-GIW-V--HQPGSEVAQTWEPRKGKN  278 (558)
Q Consensus       234 p~-e~l~~v~leveV~D~dG~--~e~-Gv~-v--~~pgt~~~~hW~~~l~~~  278 (558)
                      .. +.+....+.|+|||++..  ++. |.. +  ..-..+..++|..+|.+|
T Consensus        90 ~~~~~~~~~~l~i~V~d~d~~~~d~~iG~~~i~l~~l~~~~~~~~~~~L~~p  141 (142)
T 2chd_A           90 ITEEDMQRKTLRISVCDEDKFGHNEFIGETRFSLKKLKANQRKNFNICLERV  141 (142)
T ss_dssp             CCHHHHHHCEEEEEEEEECTTSCEEEEEEEEEEGGGCCTTCCEEEEEECBCC
T ss_pred             cCHHHccCCEEEEEEEECCCCCCCcEEEEEEEEHHHcCCCCccEEEEecccC
Confidence            32 334457899999999843  333 543 2  111222346788777665

>3fdw_A Synaptotagmin-like protein 4; structural genomics, phospholipid binding, alternative splicing, cell membrane, cytoplasmic vesicle, membrane; 2.20A {Homo sapiens}

Probab=98.82  E-value=2.4e-09  Score=96.86  Aligned_cols=79  Identities=11%  Similarity=0.116  Sum_probs=61.1

Q ss_pred             CceEEEEEEEEEeccCC-----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec
Q 008661          171 KIGRLHLAITVLEESAK-----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~-----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe  233 (558)
                      ..|+|+|+++|.+..+.                 .+.+||||++++.+.   +.+..++||.++++|+||+|| |.|.|.
T Consensus         8 ~~G~l~~sl~y~~~~~~L~V~v~~a~~L~~~d~~~~~~dpyv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~   83 (148)
T 3fdw_A            8 VTGRIAFSLKYEQQTQSLVVHVKECHQLAYADEAKKRSNPYVKTYLLPD---KSRQGKRKTSIKRDTVNPLYD-ETLRYE   83 (148)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCSBTTTTBCCEEEEEEEETC---CSGGGEEECCCCSSCSSCEEE-EEEEEE
T ss_pred             cceEEEEEEEEeCCCCEEEEEEEEecCCCCcccCCCCCCeEEEEEEEcC---CcccCccccccCCCCCCCcEe-eEEEEE
Confidence            35677777776654332                 234899999999543   445678999999999999999 999999


Q ss_pred             -CCCCCCCCceEEEEEeccCc
Q 008661          234 -SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 -p~e~l~~v~leveV~D~dG~  253 (558)
                       +...+....+.|+|||++..
T Consensus        84 v~~~~~~~~~L~~~V~d~d~~  104 (148)
T 3fdw_A           84 IPESLLAQRTLQFSVWHHGRF  104 (148)
T ss_dssp             CCSTTGGGCEEEEEEEEECGG
T ss_pred             eChhHhCceEEEEEEEECCCC
Confidence             66777778899999999843

>1v27_A Regulating synaptic membrane exocytosis protein 2; RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.7.1.2

Probab=98.82  E-value=4.2e-09  Score=93.72  Aligned_cols=79  Identities=5%  Similarity=-0.027  Sum_probs=59.8

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+|++.|.+....                .+.+||||++++...   .....++||.++++|+||+|| |.|.|. 
T Consensus         6 ~~G~i~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~~~~~~~kT~~~~~t~nP~wn-e~f~f~~   81 (141)
T 1v27_A            6 SGGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD---RSDKNKRRTKTVKKTLEPKWN-QTFIYSP   81 (141)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSCCCCEEEECCCSSC---CSSSSCCBCCCCSSCSSCCCC-CCCEECS
T ss_pred             cccEEEEEEEEeCCCCEEEEEEEEccCCCCcCCCCCCCCEEEEEEecC---CCCCcceeCccccCCCCCccc-cEEEEcc
Confidence            35777777777654432                234799999999432   334567899999999999999 999998 


Q ss_pred             -CCCCCCCCceEEEEEeccCc
Q 008661          234 -SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 -p~e~l~~v~leveV~D~dG~  253 (558)
                       +.+++....+.|+|||++..
T Consensus        82 ~~~~~~~~~~l~i~V~d~d~~  102 (141)
T 1v27_A           82 VHRREFRERMLEITLWDQARV  102 (141)
T ss_dssp             CCTTGGGTCEEEEEEEEBCSS
T ss_pred             CCHHHhcCCEEEEEEEECCCC
Confidence             34566778999999999854

>2bwq_A Regulating synaptic membrane exocytosis protein 2; C2 domain, neurotransmitter release, transport protein; 1.41A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.75  E-value=5.5e-09  Score=91.71  Aligned_cols=78  Identities=5%  Similarity=-0.017  Sum_probs=57.9

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--  233 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--  233 (558)
                      .|+|+|++.|.+....                .+.+|||+++++...   +....++||.++++|+||+|| |.|.|.  
T Consensus         4 ~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~~~~dpyv~v~~~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~~~   79 (129)
T 2bwq_A            4 SGQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD---RSDKNKRRTKTVKKTLEPKWN-QTFIYSPV   79 (129)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS---CSGGGEEECCCCSSBSSCEEE-EEEEECSC
T ss_pred             eEEEEEEEEEccCCCEEEEEEEEeeCCCCCCCCCCCCCEEEEEEecC---CCCCcceecccccCCCCCccc-cEEEEccC
Confidence            4677777777655432                234799999999543   344678899999999999999 999998  


Q ss_pred             CCCCCCCCceEEEEEeccCc
Q 008661          234 SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+.+....+.++|||++..
T Consensus        80 ~~~~~~~~~l~~~V~d~d~~   99 (129)
T 2bwq_A           80 HRREFRERMLEITLWDQARV   99 (129)
T ss_dssp             CGGGGGGCEEEEEEEEC---
T ss_pred             CHHHhcCCeEEEEEEECCcC
Confidence            33566778999999999854

>3f04_A Synaptotagmin-1; C2A, calcium, cell junction, cytoplasmic vesicle, glycoprotein, lipoprotein, membrane, metal- binding, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.7.1.2 PDB: 3f01_A 3f05_A 3f00_A 1byn_A 2k45_A 2k4a_A 2k8m_A 2ki6_A*

Probab=98.74  E-value=3.3e-09  Score=95.16  Aligned_cols=77  Identities=10%  Similarity=0.109  Sum_probs=59.0

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|++++.|.+....                .+.+||||++++...   +  .+++||.++++|+||+|| |.|.|. 
T Consensus        19 ~~G~l~~~l~y~~~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~l~~~---~--~~~~kT~v~~~t~nP~wn-e~f~f~v   92 (143)
T 3f04_A           19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD---K--KKKFETKVHRKTLNPVFN-EQFTFKV   92 (143)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEECCCCBGGGBCCCEEEEEEEESC---C--SCCEECCCCCSCSSCEEE-EEEEECC
T ss_pred             CeEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCcCcEEEEEEECC---C--CccEECccCcCCCCCcCc-CeEEEee
Confidence            46777777777655433                234899999999433   2  247899999999999999 999998 


Q ss_pred             CCCCCCCCceEEEEEeccCc
Q 008661          234 SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~  253 (558)
                      +...+....+.|+|||++..
T Consensus        93 ~~~~l~~~~L~i~V~d~d~~  112 (143)
T 3f04_A           93 PYSELGGKTLVMAVYDFDRF  112 (143)
T ss_dssp             CHHHHTTCEEEEEEEECCSS
T ss_pred             cHhhcCCCEEEEEEEeCCCC
Confidence            55556668899999999853

>1rsy_A Synaptotagmin I; calcium/phospholipid binding protein; 1.90A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.73  E-value=3.7e-09  Score=96.19  Aligned_cols=77  Identities=10%  Similarity=0.109  Sum_probs=59.0

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+++|.|.+....                .+.+||||++++...   +  .+++||.++++|+||+|| |.|.|. 
T Consensus        27 ~~G~l~~~l~y~~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~---~--~~~~kT~v~~~t~nP~wn-e~f~f~v  100 (152)
T 1rsy_A           27 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD---K--KKKFETKVHRKTLNPVFN-EQFTFKV  100 (152)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT---C--CSCEECCCCTTCSSCEEE-EEEEECC
T ss_pred             CceEEEEEEEEeCCCCEEEEEEEEeECCCCccCCCCcCeEEEEEEEcC---C--CceEeccccCCCCCCcCc-ccEEEee
Confidence            45788888887655432                234799999999532   1  256899999999999999 999998 


Q ss_pred             CCCCCCCCceEEEEEeccCc
Q 008661          234 SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~  253 (558)
                      +..++....+.|+|||++..
T Consensus       101 ~~~~l~~~~L~i~V~d~d~~  120 (152)
T 1rsy_A          101 PYSELGGKTLVMAVYDFDRF  120 (152)
T ss_dssp             CHHHHTTCEEEEEEEECCSS
T ss_pred             cHHHcCCCEEEEEEEECCCC
Confidence            54555678899999999853

>2d8k_A Synaptotagmin VII; exocytosis, calcium binding, lysosome, C2 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.73  E-value=7.8e-09  Score=92.59  Aligned_cols=59  Identities=12%  Similarity=0.084  Sum_probs=47.1

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+||||++++...     ...++||.++++++||+|| |.|.|.  +.+.+....+.|+|||++..
T Consensus        45 g~~dpyv~v~~~~~-----~~~~~kT~v~~~t~nP~wn-e~f~f~~~~~~~~~~~~l~i~V~d~d~~  105 (141)
T 2d8k_A           45 GTSDPFVKIYLLPD-----KKHKLETKVKRKNLNPHWN-ETFLFEGFPYEKVVQRILYLQVLDYDRF  105 (141)
T ss_dssp             SCCCEEEEEEEESC-----CSSEEECCCCTTCSSCCCC-EEEEECSCCHHHHTTSEEEEEEEECCSS
T ss_pred             CCCCcEEEEEEECC-----CCccEeCceEcCCCCCccc-cEEEECccCHHHcccCEEEEEEEECCCC
Confidence            34899999999532     1246899999999999999 999997  33455678899999999843

>2enp_A B/K protein; C2 type 1,beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.63  E-value=1.3e-08  Score=91.71  Aligned_cols=57  Identities=7%  Similarity=0.087  Sum_probs=46.5

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccC
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG  252 (558)
                      .+||||++++...   .+  +++||.++++++||+|| |.|.|. +..++....+.|+|||++.
T Consensus        53 ~~dpyv~v~l~~~---~~--~~~kT~v~~~t~nP~wn-e~f~f~v~~~~l~~~~L~~~V~d~d~  110 (147)
T 2enp_A           53 HSNPYVKICLLPD---QK--NSKQTGVKRKTQKPVFE-ERYTFEIPFLEAQRRTLLLTVVDFDK  110 (147)
T ss_dssp             CCCCEEEEEEETC---CS--SCEECCCCCSCSSCCCC-BCCEECCCHHHHHHSEEEEEEECCST
T ss_pred             CCCcEEEEEEEeC---CC--cceEeecccCCCCCeEe-eeEEEEeChHHhccCEEEEEEEECCC
Confidence            5899999999542   11  46899999999999999 999998 4445556789999999984

>1a25_A CALB, protein kinase C (beta); calcium++/phospholipid binding protein, calcium-binding protein; HET: PSE; 2.70A {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.46  E-value=1.1e-07  Score=85.94  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=47.7

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      +.+||||++++...   .....++||.++++|+||+|| |.|.|..........+.|+|||++..
T Consensus        50 g~~dpyv~v~~~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~L~i~V~d~d~~  110 (149)
T 1a25_A           50 GLSDPYVKLKLIPD---PKSESKQKTKTIKCSLNPEWN-ETFRFQLKESDKDRRLSVEIWDWDLT  110 (149)
T ss_dssp             SCCCEEEEEEEESC---TTCSSCEECCCCSSCSSCEEE-EEEEEECCSGGGGCEEEEEEEECCSS
T ss_pred             CCcCeEEEEEEECC---CCCcceEecceeCCCCCCcCC-cEEEEEeccccCCCEEEEEEEECCCC
Confidence            45899999999542   344677899999999999999 99999933322345799999999843

>1rh8_A Piccolo protein; beta-sandwich, metal binding protein; NMR {Rattus norvegicus} SCOP: b.7.1.2

Probab=98.43  E-value=4e-08  Score=87.72  Aligned_cols=64  Identities=11%  Similarity=-0.038  Sum_probs=48.0

Q ss_pred             CCCCCcceEEecccCCC------CceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMG------NKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~------~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG~  253 (558)
                      +.+||||++++......      +....++||.++++|+||+|| |.|.|.  +.+++....+.++|||++..
T Consensus        37 g~~Dpyv~v~~~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn-e~f~f~~v~~~~l~~~~l~i~V~d~d~~  108 (142)
T 1rh8_A           37 GYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN-QTVIYKSISMEQLMKKTLEVTVWDYDRF  108 (142)
T ss_dssp             SCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEE-EEEEECSCCHHHHTTCEEEEEEEEECSS
T ss_pred             CCCCceEEEEEecCCCcccccccccccceeeccccCCCCCCCCC-CEEEECCcCHHHccCCEEEEEEEECCCC
Confidence            45899999999543100      011346789999999999999 999996  34455677999999999853

>2b3r_A Phosphatidylinositol-4-phosphate 3-kinase C2 DOMA containing alpha polypeptide; C2 domain, lipid binding, PI3-kinase, transferase; 2.30A {Mus musculus}

Probab=98.42  E-value=1.7e-07  Score=83.71  Aligned_cols=78  Identities=14%  Similarity=0.118  Sum_probs=56.5

Q ss_pred             ceEEEEEEEEEecc--CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEE
Q 008661          172 IGRLHLAITVLEES--AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEP  247 (558)
Q Consensus       172 ~GeL~LsL~y~p~~--~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV  247 (558)
                      .|.|.+.+.-...-  ...+.+||||++++..   .+....++||.++++|+||+|| |.|.|.  +.+++....+.|+|
T Consensus        19 ~~~L~V~V~~a~~L~~~~~g~~DPyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-E~f~f~~v~~~~l~~~~L~~~V   94 (134)
T 2b3r_A           19 NGTLFIMVMHIKDLVTEDGADPNPYVKTYLLP---DTHKTSKRKTKISRKTRNPTFN-EMLVYSGYSKETLRQRELQLSV   94 (134)
T ss_dssp             TTEEEEEEEEEECCCCTTSCCCCEEEEEEEES---CSSSCCCEECCCCCSCSSCEEE-EEEEEESCCHHHHTTCEEEEEE
T ss_pred             CCEEEEEEEEeeCCCCCCCCCCCeEEEEEEEc---CCCCCceecCCcCcCCCCCCCc-cEEEECCcCHHHhCcCEEEEEE
Confidence            45666555432221  1234589999999953   3445677899999999999999 999997  33455678999999


Q ss_pred             EeccCc
Q 008661          248 INIEGQ  253 (558)
Q Consensus       248 ~D~dG~  253 (558)
                      ||++..
T Consensus        95 ~d~d~~  100 (134)
T 2b3r_A           95 LSAESL  100 (134)
T ss_dssp             EECCSS
T ss_pred             EECCCC
Confidence            999854

>2q3x_A Regulating synaptic membrane exocytosis protein 1; C2 domain dimer, neurotransmitter release, transport protein; HET: MSE; 1.73A {Rattus norvegicus}

Probab=98.41  E-value=1.5e-07  Score=87.58  Aligned_cols=59  Identities=10%  Similarity=-0.090  Sum_probs=47.9

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE-eccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI-NIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~-D~dG~  253 (558)
                      +.+||||++++..   .+++..++||.++++|+||+|| |.|.|...  .....+.|+|| |++..
T Consensus        50 g~~DPyv~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~--~~~~~L~~~V~~d~d~~  109 (171)
T 2q3x_A           50 STPAPYVKVYLLE---NGACIAKKKTRIARKTLDPLYQ-QSLVFDES--PQGKVLQVIVWGDYGRM  109 (171)
T ss_dssp             CCCEEEEEEEEEE---TTEEEEEEECCCCCSCSSCEEE-EEEECSSC--CTTEEEEEEEEEECSTT
T ss_pred             CCCCceEEEEEEC---CCccccceeCccCCCCCCCCCC-cEEEEEec--CCCCEEEEEEEEcCCCC
Confidence            4589999999954   3556678999999999999999 99999832  23578999999 98843

>1rlw_A Phospholipase A2, CALB domain; hydrolase, C2 domain; 2.40A {Homo sapiens} SCOP: b.7.1.1

Probab=98.29  E-value=1.1e-06  Score=76.63  Aligned_cols=75  Identities=7%  Similarity=0.026  Sum_probs=53.5

Q ss_pred             ceEEEEEEEEEeccCC------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEE
Q 008661          172 IGRLHLAITVLEESAK------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNF  245 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~lev  245 (558)
                      .|.|.+.+.-...-..      .+.+||||++++...     ...++||.++++++||+|| |.|.|... ......+.+
T Consensus         2 ~~~L~v~v~~a~~L~~~~~~d~~g~~dpyv~v~~~~~-----~~~~~kT~v~~~t~nP~wn-e~f~f~v~-~~~~~~l~i   74 (126)
T 1rlw_A            2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-----PDSRKRTRHFNNDINPVWN-ETFEFILD-PNQENVLEI   74 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTS-----TTCCEECCCCTTCSSCEEE-EEEEEEEC-TTSCCEEEE
T ss_pred             CcEEEEEEEeeeCCCCCCccccCCCCCCEEEEEEccC-----CCceEEccccCCCCCCccc-ceEEEEec-CCCCCEEEE
Confidence            3666666554333222      255899999999432     1367899999999999999 99999921 123568999


Q ss_pred             EEEeccCc
Q 008661          246 EPINIEGQ  253 (558)
Q Consensus       246 eV~D~dG~  253 (558)
                      +|||++..
T Consensus        75 ~V~d~d~~   82 (126)
T 1rlw_A           75 TLMDANYV   82 (126)
T ss_dssp             EEEECCSS
T ss_pred             EEEECCCC
Confidence            99999843

>2dmh_A Myoferlin; beta-sandwich, FER-1-like protein 3, muscular dystrophy, cardiomyopathy, membrane fusion, dystrophin, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.20  E-value=3.1e-06  Score=75.23  Aligned_cols=73  Identities=11%  Similarity=0.015  Sum_probs=54.0

Q ss_pred             ceEEEEEEEEEeccCC--CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCC-CCCCceEEEE
Q 008661          172 IGRLHLAITVLEESAK--QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEK-SPKVADNFEP  247 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~--l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~-l~~v~leveV  247 (558)
                      .|.|.+.+.--..-..  .+.+||||++++..        .++||.++++++||+|| |.|.|. .... .....+.|+|
T Consensus         6 ~g~L~v~v~~a~~L~~~~~g~~dpyv~v~~~~--------~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~~~l~i~V   76 (140)
T 2dmh_A            6 SGMLRVIVESASNIPKTKFGKPDPIVSVIFKD--------EKKKTKKVDNELNPVWN-EILEFDLRGIPLDFSSSLGIIV   76 (140)
T ss_dssp             CCEEEEEEEEEESCCCCSSSCCCEEEEEECSS--------CEEECCCCCSCSSCEEE-EEEEEECSSCCCCTTCEEEEEE
T ss_pred             CcEEEEEEEEeeCCCCCCCCCCCeEEEEEECC--------EeEEeeeecCCCCCccC-cEEEEEecccccCCCCEEEEEE
Confidence            5777776654332221  15689999999942        35899999999999999 999999 3322 3568899999


Q ss_pred             EeccCc
Q 008661          248 INIEGQ  253 (558)
Q Consensus       248 ~D~dG~  253 (558)
                      ||++..
T Consensus        77 ~d~d~~   82 (140)
T 2dmh_A           77 KDFETI   82 (140)
T ss_dssp             EETTCS
T ss_pred             EECCCC
Confidence            999843

>3pyc_A E3 ubiquitin-protein ligase smurf1; phospholipid binding, membrane associate, lipid binding PROT; 1.96A {Homo sapiens} PDB: 2jqz_A

Probab=98.18  E-value=2.7e-06  Score=75.15  Aligned_cols=55  Identities=7%  Similarity=0.031  Sum_probs=43.6

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+|||+++++...      .+++||.++++|+||+|| |.|.|. ...+    .+.++|||++..
T Consensus        23 ~g~sDpyv~v~~~~~------~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~----~l~~~v~d~d~~   78 (132)
T 3pyc_A           23 FRLPDPFAKIVVDGS------GQCHSTDTVKNTLDPKWN-QHYDLYVGKTD----SITISVWNHKKI   78 (132)
T ss_dssp             TCCCCEEEEEEETTT------CCEEECCCCSSCSSCEEE-EEEEEEEETTC----CEEEEEEEGGGT
T ss_pred             CCCcCeEEEEEECCC------CceEECCccCCCCCCCcc-CEEEEEeCCCC----EEEEEEEECCCC
Confidence            345899999999432      257899999999999999 899998 2221    399999999854

>3b7y_A E3 ubiquitin-protein ligase NEDD4; C2 domain, UBL-conjugation pathway, structural genomics consortium, SGC, cytoplasm; 1.80A {Homo sapiens} PDB: 2nsq_A

Probab=98.15  E-value=5.4e-06  Score=74.88  Aligned_cols=79  Identities=13%  Similarity=-0.068  Sum_probs=54.6

Q ss_pred             CCceEEEEEEEEEeccC---CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEE
Q 008661          170 IKIGRLHLAITVLEESA---KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFE  246 (558)
Q Consensus       170 k~~GeL~LsL~y~p~~~---~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leve  246 (558)
                      ...|.|++.+.--..-.   ..+.+||||++++...  ..+...++||.++++|+||+|| |.|.|....  ....+.++
T Consensus        17 ~~~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~~--~~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~--~~~~l~~~   91 (153)
T 3b7y_A           17 ENSRIVRVRVIAGIGLAKKDILGASDPYVRVTLYDP--MNGVLTSVQTKTIKKSLNPKWN-EEILFRVHP--QQHRLLFE   91 (153)
T ss_dssp             TTCEEEEEEEEEEESCC-------CCEEEEEEEEET--TTEEEEEEECCCCSSCSSCCCC-EEEEEEECT--TTCEEEEE
T ss_pred             CCccEEEEEEEEeeCCCCCCCCCCCCcEEEEEEECC--CCccceeeeCccccCCCCCCCC-CEEEEEecC--CCCEEEEE
Confidence            35677766655333222   2345899999999532  2234678899999999999999 999999322  24678999


Q ss_pred             EEeccCc
Q 008661          247 PINIEGQ  253 (558)
Q Consensus       247 V~D~dG~  253 (558)
                      |||++..
T Consensus        92 V~d~d~~   98 (153)
T 3b7y_A           92 VFDENRL   98 (153)
T ss_dssp             EEECCSS
T ss_pred             EEECCCC
Confidence            9999843

>2fk9_A Protein kinase C, ETA type; ATP-binding, metal-binding, nucleotide-binding, diacylglycerol binding, serine/threonine-protein kinase, transferase; 1.75A {Homo sapiens}

Probab=98.13  E-value=2e-06  Score=80.15  Aligned_cols=53  Identities=6%  Similarity=0.045  Sum_probs=42.4

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      +.+||||++.++..       +..||.++++|+||+|| |.|.|...+   ...++++|||++.
T Consensus        58 g~sDPYv~v~l~~~-------~~~kT~v~~ktlnP~WN-E~F~f~v~~---~~~L~~~V~D~d~  110 (157)
T 2fk9_A           58 QLLDPYLTVSVDQV-------RVGQTSTKQKTNKPTYN-EEFCANVTD---GGHLELAVFHETP  110 (157)
T ss_dssp             CCCCEEEEEEETTE-------EEEECCCCSSCSSCEEE-EEEEEEEEE---ECEEEEEEEECCS
T ss_pred             CCCCeEEEEEECCE-------eeEEeeecCCCCCCccC-cEEEEEcCC---CCEEEEEEEECCC
Confidence            45899999999322       34689999999999999 999998322   3578999999874

>1gmi_A Protein kinase C, epsilon type; PKC, C2 domain, X-RAY, phospholipids, PKC epsilon.; 1.7A {Rattus rattus} SCOP: b.7.1.1

Probab=98.13  E-value=1.7e-06  Score=77.12  Aligned_cols=52  Identities=4%  Similarity=-0.002  Sum_probs=42.0

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      .+||||+++++.       .+..||.++++|+||+|| |.|.|...+.   ..+.++|||++.
T Consensus        37 ~~DPyv~v~l~~-------~~~~~T~~~~~t~nP~Wn-E~f~f~v~~~---~~L~~~V~d~d~   88 (136)
T 1gmi_A           37 LLDPYIALNVDD-------SRIGQTATKQKTNSPAWH-DEFVTDVCNG---RKIELAVFHDAP   88 (136)
T ss_dssp             CCCEEEEEEETT-------EEEEECCCCSSCSSCEEE-EEEEEEEEEE---CEEEEEEEECCS
T ss_pred             CcCcEEEEEECC-------eEeeeeeEECCCcCCccC-CEEEEEecCC---CEEEEEEEeCCC
Confidence            389999999932       244689999999999999 9999993222   679999999984

>3m7f_B E3 ubiquitin-protein ligase NEDD4; C2 domain, GRB10, SH2 domain, phosphoprotein, conjugation pathway, signaling protein-ligase complex; 2.00A {Mus musculus}

Probab=98.08  E-value=7.3e-06  Score=76.19  Aligned_cols=78  Identities=12%  Similarity=-0.069  Sum_probs=55.9

Q ss_pred             CceEEEEEEEEEeccC---CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEE
Q 008661          171 KIGRLHLAITVLEESA---KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEP  247 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~---~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV  247 (558)
                      ..|.|.|.|.-...-.   ..+.+||||++++...  ..++.+++||.++++++||+|| |.|.|....  ....+.|+|
T Consensus         6 ~~g~L~V~v~~a~~L~~~d~~g~~DPyv~v~l~~~--~~~~~~~~kT~v~~~t~nP~Wn-e~f~f~v~~--~~~~L~~~V   80 (176)
T 3m7f_B            6 DTRVVRVKVIAGIGLAKKDILGASDPYVRVTLYDP--MSGILTSVQTKTIKKSLNPKWN-EEILFRVLP--QRHRILFEV   80 (176)
T ss_dssp             TCEEEEEEEEEEESCC---CCCCCCEEEEEEEEET--TTEEEEEEECCCCSSCSSCEEE-EEEEEEECT--TTCEEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCcCCCCCcCcEEEEEEECC--CCCcccceeCceECCCCCCccc-ceEEEEEcC--CCCEEEEEE
Confidence            4677777665433322   2456899999999542  3445578899999999999999 999998222  235789999


Q ss_pred             EeccCc
Q 008661          248 INIEGQ  253 (558)
Q Consensus       248 ~D~dG~  253 (558)
                      ||++..
T Consensus        81 ~d~d~~   86 (176)
T 3m7f_B           81 FDENRL   86 (176)
T ss_dssp             EECC--
T ss_pred             EECCCC
Confidence            998743

>2ep6_A MCTP2 protein; beta sandwich, Ca2+ binding, membrane binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.7.1.1

Probab=98.08  E-value=8.7e-06  Score=71.91  Aligned_cols=72  Identities=11%  Similarity=0.054  Sum_probs=53.4

Q ss_pred             CceEEEEEEEEEeccC---CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEE
Q 008661          171 KIGRLHLAITVLEESA---KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEP  247 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~---~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV  247 (558)
                      ..|.|++.+.--..-.   ..+.+|||+++++..        .++||.++++++||+|| |.|.|...+  ....+.++|
T Consensus        11 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--------~~~kT~~~~~t~nP~wn-e~f~f~~~~--~~~~l~i~V   79 (133)
T 2ep6_A           11 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--------DRLQTHTVYKNLNPEWN-KVFTFPIKD--IHDVLEVTV   79 (133)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--------EEEECCCCSSCSSCCCC-EEEEEEESC--TTCEEEEEE
T ss_pred             CceEEEEEEEeeECCCCCCCCCCcCeEEEEEECC--------EEEEeeeecCCCCCccc-cEEEEEecC--CCCEEEEEE
Confidence            4678877765433322   245689999999932        25799999999999999 999999322  236799999


Q ss_pred             EeccCc
Q 008661          248 INIEGQ  253 (558)
Q Consensus       248 ~D~dG~  253 (558)
                      ||++..
T Consensus        80 ~d~d~~   85 (133)
T 2ep6_A           80 FDEDGD   85 (133)
T ss_dssp             EEEETT
T ss_pred             EECCCC
Confidence            999854

>2cjt_A UNC-13 homolog A, MUNC13-1; phorbol-ester binding, neurotransmitter release, RIM, MUNC13 domains, exocytosis, metal-binding; 1.44A {Rattus norvegicus} SCOP: b.7.1.1

Probab=98.04  E-value=8e-06  Score=73.12  Aligned_cols=67  Identities=9%  Similarity=-0.063  Sum_probs=45.5

Q ss_pred             ceEEEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEec-CCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661          172 IGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIR-ESFANETTDKGSFSSVSSEKSPKVADNFEPINI  250 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~Vk-K~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~  250 (558)
                      .|.|++.+.-.......+.+||||++.. +         +.||.++ ++++||+|| |.|.|....  ....+.++|||+
T Consensus         4 ~~~L~V~V~~A~~l~~~g~~DPYv~v~~-~---------~~kt~~~~~~t~nP~Wn-E~f~f~v~~--~~~~L~~~V~D~   70 (131)
T 2cjt_A            4 MSLLCVGVKKAKFDGAQEKFNTYVTLKV-Q---------NVKSTTIAVRGSQPSWE-QDFMFEINR--LDLGLTVEVWNK   70 (131)
T ss_dssp             CEEEEEEEEEEECSSCGGGCEEEEEEEE-T---------TEEEECCCEESSSCEEE-EEEEEEECC--CSSEEEEEEEEC
T ss_pred             ceEEEEEEEEeECCCCCCCcCeEEEEEe-c---------CEEEeEecCCCCCceEC-CEEEEEEeC--CCCeEEEEEEEC
Confidence            4666666554333223456899999982 2         1345444 479999999 999999322  234699999999


Q ss_pred             c
Q 008661          251 E  251 (558)
Q Consensus       251 d  251 (558)
                      +
T Consensus        71 d   71 (131)
T 2cjt_A           71 G   71 (131)
T ss_dssp             C
T ss_pred             C
Confidence            8

>2nq3_A Itchy homolog E3 ubiquitin protein ligase; C2 domain, UBL conjugation pathway, structural genomics consortium, SGC; 1.80A {Homo sapiens} SCOP: b.7.1.1

Probab=98.00  E-value=9.8e-06  Score=76.07  Aligned_cols=70  Identities=13%  Similarity=0.080  Sum_probs=50.5

Q ss_pred             ceEEEEEEEEEeccC---CCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661          172 IGRLHLAITVLEESA---KQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI  248 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~---~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~  248 (558)
                      .|.|.+.|.--..-.   ..+-+||||++++.     +   +++||.++++|+||+|| |.|.|.. .  ....+.|+||
T Consensus        35 ~~~L~V~V~~A~~L~~~~~~~~sDPYv~v~~~-----~---~~~kT~v~~~tlnP~Wn-e~f~f~v-~--~~~~L~~~V~  102 (173)
T 2nq3_A           35 KSQLQITVISAKLKENKKNWFGPSPYVEVTVD-----G---QSKKTEKCNNTNSPKWK-QPLTVIV-T--PVSKLHFRVW  102 (173)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEET-----T---EEEECCCCSSCSSCEEE-EEEEEEE-C--TTCEEEEEEE
T ss_pred             ceEEEEEEEEeECCCCcccCCCCCeEEEEEEC-----C---EEeEccccCCCCCCeEC-CEEEEEe-C--CCCEEEEEEE
Confidence            466666554322211   12238999999993     2   67899999999999999 9999983 2  2678999999


Q ss_pred             eccCc
Q 008661          249 NIEGQ  253 (558)
Q Consensus       249 D~dG~  253 (558)
                      |++..
T Consensus       103 D~d~~  107 (173)
T 2nq3_A          103 SHQTL  107 (173)
T ss_dssp             ECCSS
T ss_pred             ECCCC
Confidence            99843

>1wfj_A Putative elicitor-responsive gene; C2 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, plant protein; NMR {Arabidopsis thaliana} SCOP: b.7.1.2

Probab=97.97  E-value=1e-05  Score=71.39  Aligned_cols=71  Identities=14%  Similarity=0.054  Sum_probs=52.0

Q ss_pred             CceEEEEEEEEEec---cCCCCCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeecCCCCCCCCceEEE
Q 008661          171 KIGRLHLAITVLEE---SAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFE  246 (558)
Q Consensus       171 ~~GeL~LsL~y~p~---~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fep~e~l~~v~leve  246 (558)
                      ..|.|.+.+.--..   ....+.+|||+++++..        .++||.+++ +++||+|| |.|.|...+  ....+.|+
T Consensus         8 ~~~~L~v~v~~a~~L~~~d~~g~~dpyv~v~~~~--------~~~kT~~~~~~~~nP~Wn-e~f~f~v~~--~~~~l~~~   76 (136)
T 1wfj_A            8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--------QDQKSNVAEGMGTTPEWN-ETFIFTVSE--GTTELKAK   76 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--------CEEECCCCTTCCSSCEEE-EEEEEEEES--SCCEEEEE
T ss_pred             CcEEEEEEEEeccCCCCcccCCCcCceEEEEECC--------ccceeEeccCCCCCCccC-cEEEEEECC--CCCEEEEE
Confidence            35777766643322   22245689999999933        246899998 89999999 999999332  56689999


Q ss_pred             EEeccC
Q 008661          247 PINIEG  252 (558)
Q Consensus       247 V~D~dG  252 (558)
                      |||++.
T Consensus        77 V~d~~~   82 (136)
T 1wfj_A           77 IFDKDV   82 (136)
T ss_dssp             ECCSSS
T ss_pred             EEECCC
Confidence            999984

>3kwu_A MUNC13-1; calcium binding protein, phospholipid binding protein, metal binding protein; HET: GOL; 1.37A {Rattus norvegicus} SCOP: b.7.1.0 PDB: 3kwt_A*

Probab=97.94  E-value=1.7e-05  Score=71.22  Aligned_cols=70  Identities=9%  Similarity=0.099  Sum_probs=51.9

Q ss_pred             ceEEEEEEEEEecc---CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661          172 IGRLHLAITVLEES---AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI  248 (558)
Q Consensus       172 ~GeL~LsL~y~p~~---~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~  248 (558)
                      .|.|.+.+.-...-   ...+.+|||+++++..        .++||.++++|+||+|| |.|.|.....  ...+.++||
T Consensus        16 ~~~L~V~v~~a~~L~~~d~~g~~dpyv~v~~~~--------~~~kT~~~~~t~nP~Wn-e~f~f~v~~~--~~~l~~~v~   84 (148)
T 3kwu_A           16 SAKISITVVCAQGLQAKDKTGSSDPYVTVQVGK--------TKKRTKTIYGNLNPVWE-ENFHFECHNS--SDRIKVRVL   84 (148)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--------EEEECCCCCSCSSCEEE-EEEEEEECST--TCEEEEEEE
T ss_pred             ccEEEEEEEeeeCCCCCCCCCCcCeEEEEEECC--------EEEECCccCCCCCCCcc-cEEEEEecCC--CCEEEEEEE
Confidence            57777766543332   2245689999999921        46799999999999999 8999982221  257999999


Q ss_pred             eccC
Q 008661          249 NIEG  252 (558)
Q Consensus       249 D~dG  252 (558)
                      |++.
T Consensus        85 d~d~   88 (148)
T 3kwu_A           85 DEDD   88 (148)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            9985

>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}

Probab=97.80  E-value=4.2e-05  Score=84.19  Aligned_cols=91  Identities=9%  Similarity=-0.099  Sum_probs=57.8

Q ss_pred             eEEEEEEEEEecc--CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661          173 GRLHLAITVLEES--AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINI  250 (558)
Q Consensus       173 GeL~LsL~y~p~~--~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~  250 (558)
                      |.|.+.+.--..-  ...+.+||||++++.     +   +++||.++++++||+|| |.|.|..........|.|+|||+
T Consensus       394 ~~L~V~V~~A~~L~~D~~g~sDPYV~v~l~-----~---~~~kTkvik~tlNP~Wn-e~f~f~~~~~~~~~~L~~~V~D~  464 (540)
T 3nsj_A          394 AHLVVSNFRAEHLWGDYTTATDAYLKVFFG-----G---QEFRTGVVWNNNNPRWT-DKMDFENVLLSTGGPLRVQVWDA  464 (540)
T ss_dssp             EEEEEEEEEEESCCCSSCSCCCEEEEEEET-----T---EEEECCCBCSCSSCBCC-CCEEEEEEETTTCCCEEEEEEEC
T ss_pred             cEEEEEEEEccCCCcccCCCcCeEEEEEEC-----C---EeeeeeeecCCCCCCCC-eEEEEEEecCCCCCEEEEEEEEC
Confidence            4555544432221  124458999999992     2   24899999999999999 89998721112456789999999


Q ss_pred             cCcc--cc-ceEEecCCccccccCc
Q 008661          251 EGQQ--ET-GIWVHQPGSEVAQTWE  272 (558)
Q Consensus       251 dG~~--e~-Gv~v~~pgt~~~~hW~  272 (558)
                      |...  +- |........+..++|-
T Consensus       465 D~~~~dD~LG~~~~~L~~g~~~~~~  489 (540)
T 3nsj_A          465 DYGWDDDLLGSCDRSPHSGFHEVTC  489 (540)
T ss_dssp             CSSSCCEEEEEEEECCCSEEEEEEE
T ss_pred             CCCCCCCEEEEEEEEeeCCcEEEEE
Confidence            9543  32 6553333333334453

>2cjs_A UNC-13 homolog A, MUNC13-1; neurotransmitter transport, zinc finger, synapto phorbol-ester binding; 1.78A {Rattus norvegicus} SCOP: b.7.1.1

Probab=97.73  E-value=3.9e-05  Score=71.77  Aligned_cols=67  Identities=7%  Similarity=-0.062  Sum_probs=45.5

Q ss_pred             ceEEEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeecCCCCCCCCceEEEEEec
Q 008661          172 IGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFEPINI  250 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~  250 (558)
                      .|.|++.+.-.......+.+||||++.. +.         .||.+++ +++||+|| |.|.|....  ....+.|+|||+
T Consensus        13 ~~~L~V~V~~A~~l~~~g~~DPYV~v~~-~~---------~kt~~~~~~t~nP~Wn-E~f~f~v~~--~~~~L~~~V~D~   79 (167)
T 2cjs_A           13 LSLLCVGVKKAKFDGAQEKFNTYVTLKV-QN---------VESTTIAVRGSQPSWE-QDFMFEINR--LDLGLTVEVWNK   79 (167)
T ss_dssp             CCEEEEEEEEEECSSCGGGCEEEEEEEE-TT---------EEEECCCEESSSCEEE-EEEEEECCC--TTSEEEEEEEEC
T ss_pred             eEEEEEEEEEEECCCCCCCCCeEEEEEe-cc---------eEEEEecCCCCCCCCC-CEEEEEeeC--CCCEEEEEEEEC
Confidence            4566665544332223455899999982 22         4555554 69999999 999999332  234699999999


Q ss_pred             c
Q 008661          251 E  251 (558)
Q Consensus       251 d  251 (558)
                      +
T Consensus        80 d   80 (167)
T 2cjs_A           80 G   80 (167)
T ss_dssp             C
T ss_pred             C
Confidence            8

>3l9b_A Otoferlin; C2-domain, beta-sheets, cell membrane, synaptic V hearing, membrane, synapse, transmembrane, membrane protein; 1.95A {Rattus norvegicus}

Probab=97.46  E-value=0.00012  Score=67.57  Aligned_cols=74  Identities=16%  Similarity=0.082  Sum_probs=55.6

Q ss_pred             EEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeec-CCCCCCCCceEEEEEecc--C
Q 008661          177 LAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSV-SSEKSPKVADNFEPINIE--G  252 (558)
Q Consensus       177 LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~d--G  252 (558)
                      |.+++....+.-+.+|||+++.+        |-.|+||.+++ +.+||+|| |.|.|. ....+..-.|++.|+|++  |
T Consensus        23 L~V~l~~a~~Lpg~~Dp~akv~F--------Rg~k~kTkvi~~~~~npvfn-E~F~wpl~~~ld~~e~L~v~V~d~~~v~   93 (144)
T 3l9b_A           23 LIVHLKTVSELRGRADRIAKVTF--------RGQSFYSRVLENCEDVADFD-ETFRWPVASSIDRNEVLEIQIFNYSKVF   93 (144)
T ss_dssp             EEEEEEEEESCCSCEEEEEEEEE--------TTEEEECCCEEEECSCEEEE-EEEEEEESSCCCTTCEEEEEEEEECTTS
T ss_pred             EEEEEEEecCCCCCCCCeEEEEE--------eccceeeEEeccCCCCceEc-ceEEecCCCCCCCCCEEEEEEEECcccc
Confidence            34433433333356899999999        33678999998 79999999 999999 556677789999999998  4


Q ss_pred             cccc-ceE
Q 008661          253 QQET-GIW  259 (558)
Q Consensus       253 ~~e~-Gv~  259 (558)
                      .+.. |-+
T Consensus        94 ~nrlIG~~  101 (144)
T 3l9b_A           94 SNKLIGTF  101 (144)
T ss_dssp             CCEEEEEE
T ss_pred             CCCEEEEE
Confidence            4544 655

>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A

Probab=97.45  E-value=0.0001  Score=82.53  Aligned_cols=62  Identities=16%  Similarity=0.099  Sum_probs=49.3

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+||||++++.+.   .+...++||.++++|+||+|| |.|.|..........+.++|||+|..
T Consensus       190 ~g~sDPyvkv~l~p~---~~~~~k~kT~v~~~tlnP~wn-e~f~f~~~~~~~~~~L~v~v~d~d~~  251 (674)
T 3pfq_A          190 NGLSDPYVKLKLIPD---PKSESKQKTKTIKSSLNPEWN-ETFRFQLKESDKDRRLSVEIWDWDLT  251 (674)
T ss_dssp             TSSCCEEEEEEEESC---SSCCSCEECCCCSSCSSCEEE-EEEEEECCSTTTTCEEEEEEEECCSS
T ss_pred             ccccCcccccccccC---ccccccccccccccccCCCcc-ceeeeecccCCccceeeeEEeecccc
Confidence            345899999999544   445667899999999999999 99999944444555799999999844

>1cjy_A CPLA2, protein (cytosolic phospholipase A2); lipid-binding, hydrolase; HET: MES; 2.50A {Homo sapiens} SCOP: b.7.1.1 c.19.1.2 PDB: 1bci_A

Probab=97.36  E-value=0.00018  Score=82.05  Aligned_cols=77  Identities=6%  Similarity=0.009  Sum_probs=55.1

Q ss_pred             CCceEEEEEEEEEeccCC------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCce
Q 008661          170 IKIGRLHLAITVLEESAK------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVAD  243 (558)
Q Consensus       170 k~~GeL~LsL~y~p~~~~------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~l  243 (558)
                      ...|.|.+.|.--..-..      .+.+||||++++...     ...++||.++++++||+|| |.|.|.... .....+
T Consensus        15 ~~~g~L~V~Vi~A~nL~~~~~~D~~g~sDPYV~V~l~~~-----~~~k~kTkvik~tlNPvWN-EtF~F~v~~-~~~~~L   87 (749)
T 1cjy_A           15 QYSHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTT-----PDSRKRTRHFNNDINPVWN-ETFEFILDP-NQENVL   87 (749)
T ss_dssp             CCCEEEEEEEEEEECCCSCHHHHHHCCCCEEEEEECTTS-----TTCCEECCCCTTCSSCEEE-EEEEEEECT-TSCCBC
T ss_pred             CCccEEEEEEEEEECCCCccccCCCCCcCeEEEEEEecC-----CCCeEecceEcCCCCCeee-eEEEEEecC-CCCCEE
Confidence            346777776653332222      345899999999432     2267899999999999999 999999222 245589


Q ss_pred             EEEEEeccCc
Q 008661          244 NFEPINIEGQ  253 (558)
Q Consensus       244 eveV~D~dG~  253 (558)
                      .|+|||+|..
T Consensus        88 ~~~V~D~D~~   97 (749)
T 1cjy_A           88 EITLMDANYV   97 (749)
T ss_dssp             EEEEEECCSS
T ss_pred             EEEEEECCCC
Confidence            9999999843

>3jzy_A Intersectin 2; C2 domain, structural genomics consortium (SGC), endocytosis; 1.56A {Homo sapiens} PDB: 3qbv_B* 1ki1_B

Probab=97.30  E-value=0.0003  Score=75.23  Aligned_cols=72  Identities=14%  Similarity=0.048  Sum_probs=51.4

Q ss_pred             ceEEEEEEEEEecc---CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661          172 IGRLHLAITVLEES---AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPI  248 (558)
Q Consensus       172 ~GeL~LsL~y~p~~---~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~  248 (558)
                      .|.|.+.+.-...-   ...+.+||||++++..        .++||.++++|+||+|| |.|.|.. .......+.|+||
T Consensus       386 ~~~l~v~v~~a~~L~~~d~~~~sdpyv~v~~~~--------~~~~T~~~~~t~nP~w~-e~f~f~~-~~~~~~~l~~~v~  455 (510)
T 3jzy_A          386 IGRLMVHVIEATELKACKPNGKSNPYCEISMGS--------QSYTTRTIQDTLNPKWN-FNCQFFI-KDLYQDVLCLTLF  455 (510)
T ss_dssp             CEEEEEEEEEEESCCCCSTTSCCCEEEEEEETT--------EEEECCCCSSCSSCEEE-EEEEEEE-SCTTTCEEEEEEE
T ss_pred             CceEEEEeceeecCCCCCCCCCCCeEEEEEECC--------eeccCCccCCCCCCccC-ceEEEEe-cCCCCCEEEEEEE
Confidence            35655554433222   2245689999999922        46899999999999999 8999982 2334467999999


Q ss_pred             eccCc
Q 008661          249 NIEGQ  253 (558)
Q Consensus       249 D~dG~  253 (558)
                      |+|..
T Consensus       456 d~d~~  460 (510)
T 3jzy_A          456 DRDQF  460 (510)
T ss_dssp             ECCSS
T ss_pred             eCCCC
Confidence            99853

>1djx_A PLC-D1, phosphoinositide-specific phospholipase C, isozyme delta1; phosphoric diester hydrolase, hydrolase, lipid degradation, transducer; HET: I3P; 2.30A {Rattus norvegicus} SCOP: a.39.1.7 b.7.1.1 c.1.18.1 PDB: 1djg_A 1dji_A 1djh_A* 1djw_A* 1djy_A* 1djz_A* 2isd_A 1qas_A 1qat_A

Probab=97.18  E-value=0.00043  Score=77.36  Aligned_cols=60  Identities=10%  Similarity=0.029  Sum_probs=45.6

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCC-CCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESF-ANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~T-lNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+||||++.+...   .....++||.+++++ +||+|| |.|.|. ...+  ...+.|+|||+|..
T Consensus       517 ~~~~DPYV~V~l~g~---~~d~~~~kTkvi~~ng~NP~Wn-E~f~F~v~~~e--l~~L~~~V~D~D~~  578 (624)
T 1djx_A          517 NSIVDPKVIVEIHGV---GRDTGSRQTAVITNNGFNPRWD-MEFEFEVTVPD--LALVRFMVEDYDSS  578 (624)
T ss_dssp             SSCCCEEEEEEEESS---GGGCEEEECCCCTTCSSSCEEE-EEEEEEESCGG--GCEEEEEEEECCSS
T ss_pred             cCCCCcEEEEEEecC---CCCcceeecccccCCCCCCccC-ceEEEEEecCC--CCEEEEEEEEcCCC
Confidence            356899999999432   123456899999998 999999 999998 4333  35789999999843

>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2; phospholipase C, phosphoinositide phospholipase, PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens} SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B

Probab=96.57  E-value=0.0035  Score=72.02  Aligned_cols=75  Identities=5%  Similarity=-0.108  Sum_probs=47.5

Q ss_pred             ceEEEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeE-ecC-CCCCCccCCCceee-c-CCCCCCCCceEEEE
Q 008661          172 IGRLHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKED-IRE-SFANETTDKGSFSS-V-SSEKSPKVADNFEP  247 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~-VkK-~TlNPvwN~E~F~F-e-p~e~l~~v~leveV  247 (558)
                      .|.|.|.|.--..-.. ..+||||++.|...  .....+|+||. +++ +++||+||++.|.| . ...++  ..+.|+|
T Consensus       677 ~~~L~V~Visa~~L~~-~~~DPYV~V~l~g~--p~d~~~k~kTk~vv~~n~~NPvWnEe~f~F~~v~~~el--~~Lr~~V  751 (799)
T 2zkm_X          677 ATTLSITVISGQFLSE-RSVRTYVEVELFGL--PGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPEL--ASLRVAV  751 (799)
T ss_dssp             CEEEEEEEEEEESCCS-SCCCEEEEEEEECC--TTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGG--CEEEEEE
T ss_pred             eeeEEEEEEeccccCc-cCCCcEEEEEEEec--CCCcccceeecccccCCCCCCeeecceEEEEEEccCCc--cEEEEEE
Confidence            4666655543222111 24899999999432  11122357898 665 56999999337999 5 33443  3789999


Q ss_pred             Eecc
Q 008661          248 INIE  251 (558)
Q Consensus       248 ~D~d  251 (558)
                      ||++
T Consensus       752 ~D~d  755 (799)
T 2zkm_X          752 MEEG  755 (799)
T ss_dssp             EETT
T ss_pred             EEeC
Confidence            9986

>3bxj_A RAS GTPase-activating protein syngap; GTPase activation, membrane, phosphoprotein, SH3-binding, signaling protein; 3.00A {Rattus norvegicus}

Probab=96.46  E-value=0.00051  Score=74.31  Aligned_cols=49  Identities=6%  Similarity=-0.166  Sum_probs=5.6

Q ss_pred             CCCcceEEecccCCCCceeeEEEeEecCCC---CCCccCCCceeecCCCCCCCCceEEEEEe
Q 008661          191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESF---ANETTDKGSFSSVSSEKSPKVADNFEPIN  249 (558)
Q Consensus       191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~T---lNPvwN~E~F~Fep~e~l~~v~leveV~D  249 (558)
                      .|||++++++..       ++.||.++++|   +||+|| |.|.|.....  ...+.++|||
T Consensus        27 ddpYv~v~l~~~-------~~~kT~v~~kt~~glnP~Wn-E~F~f~~~~~--~~~L~v~V~d   78 (483)
T 3bxj_A           27 KRYYCELCLDDM-------LYARTTSKPRSASGDTVFWG-EHFEFNNLPA--VRALRLHLYR   78 (483)
T ss_dssp             ----------------------------------------CCEECC----------------
T ss_pred             CCCeEEEEECCe-------EEeeeeEEeCCCCCCCCccc-cEEEEecCCC--ccEEEEEEEe
Confidence            389999999322       34689999999   999999 9999982212  3678899999

>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM barrel domain, hydrolase, calcium binding, phospholipid binding; 2.00A {Sepia officinalis} PDB: 3qr1_A

Probab=96.13  E-value=0.0078  Score=69.29  Aligned_cols=58  Identities=10%  Similarity=-0.132  Sum_probs=41.1

Q ss_pred             CCCCcceEEecccCCCCceeeEEEeEecCC-CCCCccCCCc-eeec--CCCCCCCCceEEEEEecc
Q 008661          190 VDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGS-FSSV--SSEKSPKVADNFEPINIE  251 (558)
Q Consensus       190 lsDPyVKv~L~~~~~~~krlkKKKT~VkK~-TlNPvwN~E~-F~Fe--p~e~l~~v~leveV~D~d  251 (558)
                      .+||||++.|.... .....+++||.++++ ++||+|| |. |.|.  ...+  ...+.|+|||++
T Consensus       666 ~~DPYV~V~l~g~p-~d~~~~k~kTkvv~~nglNPvWN-E~~F~F~~v~~pe--la~Lrf~V~D~d  727 (816)
T 3qr0_A          666 QISSYVEVEMYGLP-TDTVRKKFKTKIIENNGMDPYYD-EKVFVFKKVVLPD--LAVVRIIVSEEN  727 (816)
T ss_dssp             CCCEEEEEEEESSG-GGCEEEEEECCCBCSCSSCCBCC-CCCEEEEEESCGG--GCEEEEEEEETT
T ss_pred             CCCCeEEEEEeCCC-cccccceeeeEEecCCCCCCeEc-CceeEEccccCCC--ccEEEEEEEecC
Confidence            38999999994320 112235779999876 5999999 65 9996  2233  357899999975

>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}

Probab=96.02  E-value=0.0056  Score=71.01  Aligned_cols=74  Identities=7%  Similarity=-0.076  Sum_probs=46.2

Q ss_pred             EEEEEEEeccCC-CCCCCCcceEEecccCCCCceeeEEEeEecCC-CCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661          176 HLAITVLEESAK-QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRES-FANETTDKGSFSSVSSEKSPKVADNFEPINIE  251 (558)
Q Consensus       176 ~LsL~y~p~~~~-l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~-TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d  251 (558)
                      .|.|.+.....- ...+||||++.|...  .....+|+||.++++ ++||+||++.|.|..........|.|+|||++
T Consensus       726 ~L~V~Visaq~L~~~~~DPYV~V~l~g~--p~D~~~k~kTkvi~~NglNPvWnEe~F~F~~V~~pela~Lrf~V~D~d  801 (885)
T 3ohm_B          726 ALRVKVISGQFLSDRKVGIYVEVDMFGL--PVDTRRKYRTRTSQGNSFNPVWDEEPFDFPKVVLPTLASLRIAAFEEG  801 (885)
T ss_dssp             EEEEEEEEEESCCSSCCCEEEEEEEESS--TTTCBCCCCCCCCSSCSSSCBCCCCCEEEEEESCGGGCEEEEEEEETT
T ss_pred             EEEEEEEEeccCcccCCCcEEEEEEeCC--CcccccceeeEEeeCCCcCCeeccceeEEeeEEcCCcCEEEEEEEcCC
Confidence            455555443321 123899999999432  111223468988876 59999993369997111222347999999986

>1yrk_A NPKC-delta, protein kinase C, delta type; C2 domain, protein binding; HET: PTR; 1.70A {Homo sapiens} PDB: 1bdy_A

Probab=88.36  E-value=2  Score=38.69  Aligned_cols=68  Identities=9%  Similarity=0.030  Sum_probs=42.3

Q ss_pred             eEEEEEEEEEeccC---CCCCCCCcceEEecccCCCCceeeEEEe-EecCCCCCCccCCCceeecCCCCCCCCceEEEEE
Q 008661          173 GRLHLAITVLEESA---KQGVDSPCDGGTLNKEGMGNKEDQSNKE-DIRESFANETTDKGSFSSVSSEKSPKVADNFEPI  248 (558)
Q Consensus       173 GeL~LsL~y~p~~~---~l~lsDPyVKv~L~~~~~~~krlkKKKT-~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~  248 (558)
                      +-|++.+.-.....   ...+.|||+.+.++-...    -.+-|| ..+++|..|+|| +.|....   ..-..+++.|+
T Consensus         6 ~flRi~~~~~~~~~~~~~~~~lDPy~aV~vdE~~~----~e~g~t~~~K~kT~~P~Wn-e~Fd~~V---~~Gr~l~i~Vf   77 (126)
T 1yrk_A            6 PFLRIAFNSYELGSLQAEDEANQPFCAVKMKEALS----TERGKTLVQKKPTMYPEWK-STFDAHI---YEGRVIQIVLM   77 (126)
T ss_dssp             CEEEEEEEEEECSSCCCSSSSCCCEEEEEEEEEEE----ETTEEEEECCSCCBCCCTT-CEEEEEC---CTTCEEEEEEE
T ss_pred             ccEEeeeccccccccCCccccCCceEEEEeeeeEE----cccceeecccCCCCCcCcc-ceEEeee---eCCEEEEEEEE
Confidence            45666665444322   223589999999843310    011255 778899999999 8888663   33356667766

>3l4c_A Dedicator of cytokinesis protein 1; DOCK180, DOCK1, phosphoinositide specificity, guanine exchan factor, RHO GTPase, cytoskeleton, cell migration; 2.37A {Homo sapiens}

Probab=88.10  E-value=3.3  Score=40.58  Aligned_cols=56  Identities=13%  Similarity=0.290  Sum_probs=41.5

Q ss_pred             eEEEeeeecCCCCCccceEEEEeeccCC-CCceEEEEEeecCCC----C-CCccEEEEEecc
Q 008661           98 YRFRTKTQRKTLSPKWHEEFNIPISTWD-SPNVLVIEVRDKDHF----V-DDTLGDCTINIS  153 (558)
Q Consensus        98 ~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~~tL~V~V~D~D~~----s-DDfIGev~IpL~  153 (558)
                      ..++|-|...+.+|.|+|++.+.++... ....|.|+++.....    . ...+|.+.+||-
T Consensus        77 se~~S~V~YHnk~P~w~EtIKi~LP~~~~~~~HLlFtFrH~S~~~k~dk~E~pfg~a~lPL~  138 (220)
T 3l4c_A           77 SEYKSVIYYQVKQPRWFETVKVAIPIEDVNRSHLRFTFRHRSSQDSKDKSEKIFALAFVKLM  138 (220)
T ss_dssp             SCEECCCCTTCSSCCCCEEEEEEECTTSSTTEEEEEEEEECCCCSSCCCCCCEEEEEEEESB
T ss_pred             eeEEEEEEEcCCCCCceEeEEEeeChhhcCCeEEEEEEEEecccccccccCCeeEEEEEEcc
Confidence            4578889999999999999999998643 345899999876432    1 235677766664

>2wxf_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit delta isoform; transferase, phosphoprotein, isoform-specific inhibitors; HET: 039; 1.90A {Mus musculus} PDB: 2wxg_A* 2wxh_A* 2wxi_A* 2wxj_A* 2wxk_A* 2wxl_A* 2wxm_A* 2wxn_A* 2wxo_A* 2wxp_A* 2wxq_A* 2wxr_A 2x38_A*

Probab=85.95  E-value=2.5  Score=49.50  Aligned_cols=103  Identities=17%  Similarity=0.183  Sum_probs=68.4

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CCe----EEEeeeecCCCCCccceEEEEeec--cCCCCceEEEEEee
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQL--GPY----RFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRD  136 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp~----k~KTkVikkTlNPvWnEtF~F~V~--~~e~~~tL~V~V~D  136 (558)
                      ...|.|+|..+.++...   ...+-||.+.+  |..    ...|..+.-..+|.|||.+.|.+.  ..+....|.|+||+
T Consensus       216 ~~~f~i~i~~~~~~~~~---~~~~~~V~~~l~~g~~~l~~~~~T~~~~~~~~~~Wne~l~f~i~i~dLPr~a~L~~ti~~  292 (940)
T 2wxf_A          216 EQPFSIELIEGRKVNAD---ERMKLVVQAGLFHGNEMLCKTVSSSEVNVCSEPVWKQRLEFDISVCDLPRMARLCFALYA  292 (940)
T ss_dssp             CSEEEEEEEEEECCCC------CEEEEEEEEEETTEESSCCEECCCEESCSSCEEEEEEEEEEEGGGCCTTCEEEEEEEE
T ss_pred             CCceEEEEEEecccCCC---CCceEEEEEEEEECCEEccCceecccccCCCCcccceEEEcccccccCCcccEEEEEEEE
Confidence            36799999999999653   34678888776  442    334555555678999999888765  34456799999999


Q ss_pred             cCCC-----------C--CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEE
Q 008661          137 KDHF-----------V--DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITV  181 (558)
Q Consensus       137 ~D~~-----------s--DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y  181 (558)
                      ...-           +  +..||.+.++|-+...        .|   ..|...|.++-
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~lFd~~~--------~l---~~G~~~l~lw~  339 (940)
T 2wxf_A          293 VVEKAKKARSTKKKSKKADCPIAWANLMLFDYKD--------QL---KTGERCLYMWP  339 (940)
T ss_dssp             EC----------------CEEEEEEEEESBCTTS--------BB---CCEEEEEECEE
T ss_pred             ecCCccCccccccccccccceEEEEeeeEECCcC--------cc---ccCCEEEEEee
Confidence            6331           1  3478888888775432        11   25777777764

>2enj_A NPKC-theta, protein kinase C theta type; beta-sandwich, phosphotyrosine binding, TCR, T-cell, diacylglycerol, phorbol ester, structural genomics; NMR {Homo sapiens}

Probab=84.00  E-value=2.7  Score=38.40  Aligned_cols=68  Identities=6%  Similarity=-0.039  Sum_probs=42.3

Q ss_pred             eEEEEEEEEEeccCC----CCCCCCcceEEecccCCCCceeeEEEe-EecCCCCCCccCCCceeecCCCCCCCCceEEEE
Q 008661          173 GRLHLAITVLEESAK----QGVDSPCDGGTLNKEGMGNKEDQSNKE-DIRESFANETTDKGSFSSVSSEKSPKVADNFEP  247 (558)
Q Consensus       173 GeL~LsL~y~p~~~~----l~lsDPyVKv~L~~~~~~~krlkKKKT-~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV  247 (558)
                      +-|++.+.-......    -.+.|||+.+.++-...    ..+-|| ..+++|..|+|| +.|...   ...-..+++.|
T Consensus        10 ~flRi~l~~~~~~~~~~~~~~~lDPY~aV~VdE~~~----te~gqtl~~KkkT~~P~Wn-e~Fd~~---V~~Gr~l~i~V   81 (138)
T 2enj_A           10 PFLRIGLSNFDCGSCQSCQGEAVNPYCAVLVKEYVE----SENGQMYIQKKPTMYPPWD-STFDAH---INKGRVMQIIV   81 (138)
T ss_dssp             CCEEEEEEEEECCCCCCSCCCCCCCEEEEEEEEEEE----ETTEEEEEEEEEEECCCSS-SEEEEC---CCSSCEEEEEE
T ss_pred             cceEEEeeccccCCCCCcccccCCceEEEEeeeeee----ccCceeecccCCCCCcccc-ceEeee---EECCeEEEEEE
Confidence            456666654443221    23589999999833211    112455 667788999999 888765   33445677777


Q ss_pred             E
Q 008661          248 I  248 (558)
Q Consensus       248 ~  248 (558)
                      +
T Consensus        82 f   82 (138)
T 2enj_A           82 K   82 (138)
T ss_dssp             E
T ss_pred             E
Confidence            7

>3hhm_A Phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha isoform; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_A 2rd0_A 4a55_A* 2enq_A

Probab=81.95  E-value=5.7  Score=47.12  Aligned_cols=103  Identities=19%  Similarity=0.275  Sum_probs=70.0

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEe--CC----eEEEeeeecCCCCCccceEEEEeec--cCCCCceEEEEEee
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQL--GP----YRFRTKTQRKTLSPKWHEEFNIPIS--TWDSPNVLVIEVRD  136 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~L--gp----~k~KTkVikkTlNPvWnEtF~F~V~--~~e~~~tL~V~V~D  136 (558)
                      ...++|+|+.+.++... .....+-||.+.+  |.    ...+|+.+. ..+|.|||.+.|.+.  ..+....|.|+||+
T Consensus       354 ~~~f~v~i~~~~~~n~~-~~~~~~~~V~~~l~hG~~~L~~~~~T~~~~-~~~~~Wne~l~f~i~i~dLPr~arL~~tl~~  431 (1091)
T 3hhm_A          354 NSALRIKILCATYVNVN-IRDIDKIYVRTGIYHGGEPLCDNVNTQRVP-CSNPRWNEWLNYDIYIPDLPRAARLCLSICS  431 (1091)
T ss_dssp             CSEEEEEEEEESCCCCC-CSSCCCCCEEEEEESSSCSSCCEECCCCCC-TTSCEEEEEEEEEEEGGGCCTTCEEEEEECC
T ss_pred             CCCEEEEEEEecCCCCC-ccccceEEEEEEEEECCEEccCceeccccC-CCCCCCCeeEEecCccccCChhcEEEEEEEE
Confidence            35789999999988643 2334678888887  43    234444333 457889999888775  44456799999998


Q ss_pred             cCCCC-----CCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEE
Q 008661          137 KDHFV-----DDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAIT  180 (558)
Q Consensus       137 ~D~~s-----DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~  180 (558)
                      ....+     +..||.+.++|-+....        |   ..|...|.++
T Consensus       432 ~~~~~~~~~~~~~lg~~n~~lfd~~~~--------L---~~G~~~L~lW  469 (1091)
T 3hhm_A          432 VKGRKGAKEEHCPLAWGNINLFDYTDT--------L---VSGKMALNLW  469 (1091)
T ss_dssp             CCCCC-------CCEEEEEESBCTTCB--------B---CCEEEEEECE
T ss_pred             ecCccCcccccceeEEeeeeeEccCCe--------E---EcCCeEEEee
Confidence            76531     35789999988765321        2   2588777776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	558
d1rlwa_	126	b.7.1.1 (A:) Domain from cytosolic phospholipase A	4e-22
d2ep6a1	126	b.7.1.1 (A:92-217) Multiple C2 and transmembrane d	7e-22
d1rsya_	143	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	6e-21
d1a25a_	132	b.7.1.2 (A:) C2 domain from protein kinase c (beta	1e-20
d2bwqa1	125	b.7.1.2 (A:729-853) Regulating synaptic membrane e	1e-18
d1rh8a_	142	b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [Tax	7e-17
d1w15a_	138	b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegi	1e-16
d1wfja_	136	b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cr	2e-16
d1bdya_	123	b.7.1.1 (A:) Domain from protein kinase C delta {R	3e-16
d1gmia_	136	b.7.1.1 (A:) Domain from protein kinase C epsilon	2e-15
d1uowa_	157	b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicu	4e-15
d2cm5a1	137	b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (	2e-14
d2cjta1	128	b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus no	4e-14
d2nq3a1	133	b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itc	1e-12
d1wfma_	138	b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapie	2e-12
d1qasa2	131	b.7.1.1 (A:626-756) PI-specific phospholipase C is	3e-12
d1ugka_	138	b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens	8e-12
d1dqva2	145	b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus	9e-12
d1dqva1	130	b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus	3e-10
d2zkmx2	122	b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human	2e-08

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.8 bits (222), Expect = 4e-22
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 7/120 (5%)

Query: 69  RVEVVEASDMKP---SDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPIS 122
            V V+ A+ +      D+    DPYV+  +      R RT+     ++P W+E F   I 
Sbjct: 6   TVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFE-FIL 64

Query: 123 TWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVL 182
             +  NVL I + D ++ +D+TLG  T  +S ++ G++ ++      +    L +++ V 
Sbjct: 65  DPNQENVLEITLMDANYVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVA 124

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 126

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (220), Expect = 7e-22
 Identities = 42/129 (32%), Positives = 71/129 (55%), Gaps = 11/129 (8%)

Query: 60  DVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNI 119
           DVK  V   +V+V++A+D+  +D +G +DP+   +LG  R +T T  K L+P+W++ F  
Sbjct: 1   DVK-DVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTF 59

Query: 120 PISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDLRDGQRHDMWIPLQNIKI-----G 173
           PI   D  +VL + V D+D     D LG   I +  +RDGQ +     L+N  +     G
Sbjct: 60  PI--KDIHDVLEVTVFDEDGDKPPDFLGKVAIPLLSIRDGQPN--CYVLKNKDLEQAFKG 115

Query: 174 RLHLAITVL 182
            ++L + ++
Sbjct: 116 VIYLEMDLI 124

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 143

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 87.1 bits (215), Expect = 6e-21
 Identities = 33/106 (31%), Positives = 57/106 (53%), Gaps = 5/106 (4%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD 125
            V +++A+++   D+ G +DPYVK  L P    +F TK  RKTL+P ++E+F   +   +
Sbjct: 37  LVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSE 96

Query: 126 SPN-VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169
                LV+ V D D F   D +G+  + ++ +  G   + W  LQ+
Sbjct: 97  LGGKTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS 142

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 132

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 85.5 bits (211), Expect = 1e-20
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 7/111 (6%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPIST 123
            V V +A ++ P D NGL+DPYVK +L P        +TKT + +L+P+W+E F   +  
Sbjct: 18  IVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKE 77

Query: 124 WDSPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG 173
            D    L +E+ D D    +D +G  +  IS+L+     D W  L + + G
Sbjct: 78  SDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGV-DGWFKLLSQEEG 127

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (197), Expect = 1e-18
 Identities = 29/110 (26%), Positives = 43/110 (39%), Gaps = 11/110 (10%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEFNIPI-- 121
            V ++ A D+   +     +PYVK    P R      RTKT +KTL PKW++ F      
Sbjct: 17  IVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVH 76

Query: 122 STWDSPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ 168
                  +L I + D+        + LG+  I +           W  LQ
Sbjct: 77  RREFRERMLEITLWDQARVREEESEFLGEILIELETA-LLDDEPHWYKLQ 125

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 142

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 75.3 bits (184), Expect = 7e-17
 Identities = 32/118 (27%), Positives = 55/118 (46%), Gaps = 17/118 (14%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWH 114
            + +++A ++ P D NG +DP+VK  L P              Y+ RTK  +K+L+P+W+
Sbjct: 21  IIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN 80

Query: 115 EEFNIPISTWDSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN 169
           +       + +      L + V D D F  +D LG+  I++S          W PL+ 
Sbjct: 81  QTVIYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKE 138

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 74.7 bits (183), Expect = 1e-16
 Identities = 25/119 (21%), Positives = 45/119 (37%), Gaps = 19/119 (15%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 123
            V V++A  +  SD++GL+DPYVK  L        + +T  ++ T +  ++E F   I  
Sbjct: 18  TVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPC 77

Query: 124 WD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQ 168
                  +   V D +    ++ +G   +  +    G  H              W  L 
Sbjct: 78  ESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLC 136

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.0 bits (181), Expect = 2e-16
 Identities = 27/131 (20%), Positives = 52/131 (39%), Gaps = 7/131 (5%)

Query: 64  PVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKT-QRKTLSPKWHEEFNIPIS 122
           P     V +V A  ++ +D     DPYV+        ++   +    +P+W+E F   +S
Sbjct: 8   PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVS 67

Query: 123 TWDSPNVLVIEVRDKDHFV-DDTLGDCTINISDL-RDGQRHDMWIPLQ--NIKIGRLHLA 178
             +    L  ++ DKD    DD +G+ TI +  +  +G        +       G + +A
Sbjct: 68  --EGTTELKAKIFDKDVGTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVA 125

Query: 179 ITVLEESAKQG 189
           ++        G
Sbjct: 126 LSFKPSGPSSG 136

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 123

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.9 bits (178), Expect = 3e-16
 Identities = 15/127 (11%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 63  EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR-----FRTKTQRKTLSPKWHEEF 117
            P         E   ++    +  + P+   ++              ++ T+ P+W   F
Sbjct: 2   APFLRISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTF 59

Query: 118 NIPISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHL 177
           +  I       +++     +D   + T+G   +     ++  + + W+ LQ     ++ +
Sbjct: 60  DAHIYEGRVIQIVL-MRAAEDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLM 116

Query: 178 AITVLEE 184
            +    E
Sbjct: 117 CVQYFLE 123

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]} Length = 136

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

 Score = 71.5 bits (174), Expect = 2e-15
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 20/133 (15%)

Query: 69  RVEVVEASDMKPSDL-----------NGLADPYVKGQLGPYRF-RTKTQRKTLSPKWHEE 116
           ++++ EA  +KP+               L DPY+   +   R  +T T++KT SP WH+E
Sbjct: 9   KIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDE 68

Query: 117 FNIPISTWDSPNVLVIEVRDKDHF-VDDTLGDCTINISDL--RDGQRHDMWIPLQNIKIG 173
           F   +          + V        DD + +CTI   +L     +  + WI L+    G
Sbjct: 69  FVTDVCNGRKI---ELAVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLE--PEG 123

Query: 174 RLHLAITVLEESA 186
           ++++ I +   S 
Sbjct: 124 KVYVIIDLSGSSG 136

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 157

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.6 bits (172), Expect = 4e-15
 Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 19/130 (14%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPIST 123
            V ++EA ++K  D+ GL+DPYVK  L        + +T  ++ TL+P ++E F+  +  
Sbjct: 28  TVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPF 87

Query: 124 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 169
                V +V+ V D D    +D +G   +  +      RH              W  LQ 
Sbjct: 88  EQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQV 147

Query: 170 IKIGRLHLAI 179
            +     LA+
Sbjct: 148 EEEVDAMLAV 157

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 137

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 68.3 bits (166), Expect = 2e-14
 Identities = 35/120 (29%), Positives = 56/120 (46%), Gaps = 19/120 (15%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPIST 123
            V ++    +   D NG +DP+VK  L P      + +T+ ++KTL+P+++EEF   I  
Sbjct: 18  IVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKH 77

Query: 124 WD-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRH------------DMWIPLQN 169
            D +   L I V D D    +D +G C + IS   +  +H            + W  LQN
Sbjct: 78  SDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQN 137

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 128

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 67.1 bits (163), Expect = 4e-14
 Identities = 21/101 (20%), Positives = 39/101 (38%), Gaps = 8/101 (7%)

Query: 70  VEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNV 129
           V V +A      +     + YV  ++   +  T    +   P W ++F   I+  D    
Sbjct: 6   VGVKKAKFDGAQEK---FNTYVTLKVQNVKSTTIAV-RGSQPSWEQDFMFEINRLDLG-- 59

Query: 130 LVIEVRDKDHFVDDTLGDCTINISDLR--DGQRHDMWIPLQ 168
           L +EV +K    D  +G   I +  +R  + +    W+ L 
Sbjct: 60  LTVEVWNKGLIWDTMVGTVWIPLRTIRQSNEEGPGEWLTLD 100

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]} Length = 133

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.2 bits (153), Expect = 1e-12
 Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 14/126 (11%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPN 128
           ++ V+ A   +         PYV+  +     +T+    T SPKW +   + ++     +
Sbjct: 9   QITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTPV---S 65

Query: 129 VLVIEVRDKDHFV-DDTLGDCTINISDL---RDGQRHDMWIPLQ-------NIKIGRLHL 177
            L   V        D  LG   ++I +     + +  ++ + LQ          IG L +
Sbjct: 66  KLHFRVWSHQTLKSDVLLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSI 125

Query: 178 AITVLE 183
            +  L+
Sbjct: 126 CLDGLQ 131

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 2e-12
 Identities = 23/119 (19%), Positives = 46/119 (38%), Gaps = 9/119 (7%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSP 111
            + +D     A   V  +EA      + +G  D YV+G +         +T  +++ L  
Sbjct: 16  HYCLDYDCQKAELFVTRLEAVTS---NHDGGCDCYVQGSVANRTGSVEAQTALKKRQLHT 72

Query: 112 KWHEEFNIPISTWDSP-NVLVIEVRDKDHFVDDTL-GDCTINISDLRDGQRHDMWIPLQ 168
            W E   +P++  + P   L + +R  D F   ++ G+  + +           W  L+
Sbjct: 73  TWEEGLVLPLAEEELPTATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELK 131

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 131

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.7 bits (149), Expect = 3e-12
 Identities = 23/119 (19%), Positives = 45/119 (37%), Gaps = 13/119 (10%)

Query: 69  RVEVVEASDMKP--SDLNGLADPYVKGQLGPYRFRTKTQRKT------LSPKWHEEFNIP 120
           RV ++    +     + N + DP V  ++      T +++         +P+W  EF   
Sbjct: 7   RVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFE 66

Query: 121 ISTWDSPNVLVIEVRDKDHFVDDT-LGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 178
           + T     ++   V D D    +  +G  TI  + L+ G R    + L +    +   A
Sbjct: 67  V-TVPDLALVRFMVEDYDSSSKNDFIGQSTIPWNSLKQGYR---HVHLLSKNGDQHPSA 121

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]} Length = 138

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.9 bits (147), Expect = 8e-12
 Identities = 29/123 (23%), Positives = 51/123 (41%), Gaps = 8/123 (6%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNG-LADPYVKGQLGP---YRFRTKTQRKTLSP 111
           +FS++         V + EA  +   D     +DPY+K  + P   ++ +T+  RKTL P
Sbjct: 12  FFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDP 71

Query: 112 KWHEEFNIPISTWDSPN--VLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ 168
            + E F      +       L   +   D F  DD +G+  I +S +   +   M +  +
Sbjct: 72  AFDETFTFYGIPYTQIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGK-MLMNRE 130

Query: 169 NIK 171
            I 
Sbjct: 131 IIS 133

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 61.0 bits (147), Expect = 9e-12
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 20/123 (16%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGPY-----RFRTKTQRKTLSPKWHEEFNIPIST 123
            V +++AS++K  DL G +DPYVK  L        + +T  ++ TL+P ++E     ++ 
Sbjct: 23  TVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAP 82

Query: 124 WDSPNV-LVIEVRDKDHFV-DDTLGDCTINISDLRD-------------GQRHDMWIPLQ 168
               NV L I V D D    ++ +G C +                     +  + W  L 
Sbjct: 83  ESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV 142

Query: 169 NIK 171
             K
Sbjct: 143 EEK 145

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 130

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (134), Expect = 3e-10
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 7/120 (5%)

Query: 56  WFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYR---FRTKTQRKTLSPK 112
            F++          V +++A D+   D NG +DPYVK  L P R   F+TK  RKTL+P 
Sbjct: 8   SFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPI 67

Query: 113 WHEEFNIPISTWDSPN-VLVIEVRDKDHFV-DDTLGDCTINISD--LRDGQRHDMWIPLQ 168
           ++E F   +   +     L   V D D F   D +G   ++             +W  + 
Sbjct: 68  FNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDIL 127

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.7 bits (121), Expect = 2e-08
 Identities = 21/119 (17%), Positives = 39/119 (32%), Gaps = 19/119 (15%)

Query: 69  RVEVVEASDMKPSDLNGLADPYVKGQLGP--------YRFRTKTQRKTLSPKWHEEFNI- 119
            + V+    +           YV+ +L          YR +      +++P W EE  + 
Sbjct: 4   SITVISGQFLSERS----VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVF 59

Query: 120 PISTWDSPNVLVIEVRDKDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLA 178
                     L + V ++    +  LG   I I+ L  G  H   + L +     L + 
Sbjct: 60  EKILMPELASLRVAVMEEG---NKFLGHRIIPINALNSGYHH---LCLHSESNMPLTMP 112

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	558
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	99.88
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	99.86
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.86
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	99.85
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.84
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	99.84
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	99.82
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	99.82
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	99.82
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	99.81
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.79
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.79
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	99.79
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.79
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	99.78
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.75
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	99.73
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	99.73
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	99.65
d1w15a_	138	Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId:	99.61
d1uowa_	157	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	99.56
d1dqva2	145	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	99.56
d2cm5a1	137	C2b-domain of rabphilin {Rat (Rattus norvegicus) [	99.51
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	99.4
d1dqva1	130	Synaptotagmin III {Rat (Rattus norvegicus) [TaxId:	98.94
d1wfma_	138	Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9	98.89
d2bwqa1	125	Regulating synaptic membrane exocytosis protein, r	98.79
d1rsya_	143	Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10	98.79
d1a25a_	132	C2 domain from protein kinase c (beta) {Rat (Rattu	98.78
d1ugka_	138	Synaptotagmin IV {Human (Homo sapiens) [TaxId: 960	98.74
d1rh8a_	142	Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}	98.4
d1bdya_	123	Domain from protein kinase C delta {Rat (Rattus no	98.11
d2ep6a1	126	Multiple C2 and transmembrane domain-containing pr	98.07
d1rlwa_	126	Domain from cytosolic phospholipase A2 {Human (Hom	98.07
d2zkmx2	122	Phospholipase C-beta-2 {Human (Homo sapiens) [TaxI	97.85
d2nq3a1	133	E3 ubiquitin-protein ligase Itchy {Human (Homo sap	97.82
d1wfja_	136	C2 domain protein At1g63220 {Thale cress (Arabidop	97.81
d1qasa2	131	PI-specific phospholipase C isozyme D1 (PLC-D1), C	97.8
d1gmia_	136	Domain from protein kinase C epsilon {Rat (Rattus	97.7
d2cjta1	128	Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId:	97.3
d1e7ua2	174	Phoshoinositide 3-kinase (PI3K) {Pig (Sus scrofa)	92.61

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2e-22  Score=177.60  Aligned_cols=117  Identities=32%  Similarity=0.518  Sum_probs=104.5

Q ss_pred             CCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-
Q 008661           63 EPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-  141 (558)
Q Consensus        63 ~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-  141 (558)
                      .+.|.|+|+|++|++|+.++..|.+||||++++++.+++|+++++|+||.|||+|.|.+..  ....|.|+|||++.++ 
T Consensus         3 ~~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~~~~~T~~~~~t~nP~wne~f~f~v~~--~~~~L~i~V~d~~~~~~   80 (126)
T d2ep6a1           3 KDVGILQVKVLKAADLLAADFSGKSDPFCLLELGNDRLQTHTVYKNLNPEWNKVFTFPIKD--IHDVLEVTVFDEDGDKP   80 (126)
T ss_dssp             CCSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETTEEEECCCCSSCSSCCCCEEEEEEESC--TTCEEEEEEEEEETTEE
T ss_pred             CccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCCeEEEEEeeCCceeEEEEEEEEEEEec--cCceeEEEEEEccCCcC
Confidence            4679999999999999999999999999999999999999999999999999999999985  3568999999999998 


Q ss_pred             CCccEEEEEecccccCCCceeeeeecCC-----CCceEEEEEEEEEe
Q 008661          142 DDTLGDCTINISDLRDGQRHDMWIPLQN-----IKIGRLHLAITVLE  183 (558)
Q Consensus       142 DDfIGev~IpL~eL~~~~~~e~W~~L~~-----k~~GeL~LsL~y~p  183 (558)
                      |++||++.|+|.++..+.  ..|+.|..     ..+|+|+|++.|..
T Consensus        81 d~~lG~~~i~l~~l~~~~--~~~~~l~~~~~~~~~~G~i~l~~~~i~  125 (126)
T d2ep6a1          81 PDFLGKVAIPLLSIRDGQ--PNCYVLKNKDLEQAFKGVIYLEMDLIY  125 (126)
T ss_dssp             EEECCBCEEEGGGCCSSC--CEECCCBCSCTTSCCSSEEEEEEEEEE
T ss_pred             cceEEEEEEEHHHCCCCC--ceEEEccccCCCCceeEEEEEEEEEEE
Confidence            899999999999997654  45776643     35699999999875

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=7.4e-22  Score=173.18  Aligned_cols=118  Identities=25%  Similarity=0.432  Sum_probs=105.5

Q ss_pred             ceEEEEEEEEecCCCCC---CCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecC
Q 008661           65 VAYARVEVVEASDMKPS---DLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKD  138 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~---D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D  138 (558)
                      .+.|+|+|++|++|+..   |..|.+||||++++++   .+++|+++++++||.|||+|.|.+.. .....|.|+|||++
T Consensus         2 s~~l~V~v~~a~~L~~~~~~d~~~~~Dpyv~v~l~~~~~~~~~T~~~~~t~nP~wne~f~f~i~~-~~~~~L~v~V~d~d   80 (126)
T d1rlwa_           2 SHKFTVVVLRATKVTKGAFGDMLDTPDPYVELFISTTPDSRKRTRHFNNDINPVWNETFEFILDP-NQENVLEITLMDAN   80 (126)
T ss_dssp             CEEEEEEEEEEESCCSCHHHHHHCCCCEEEEEECTTSTTCCEECCCCTTCSSCEEEEEEEEEECT-TSCCEEEEEEEECC
T ss_pred             CcEEEEEEEEccCCCCccccccCCCCCcEEEEEECCcccceeEeeecCCCccceeceeeeecccC-cccCcEEEEEEECC
Confidence            36899999999999874   3468899999999976   67899999999999999999999975 34568999999999


Q ss_pred             CCCCCccEEEEEecccccCCCceeeeeecCCCCceEEEEEEEEEe
Q 008661          139 HFVDDTLGDCTINISDLRDGQRHDMWIPLQNIKIGRLHLAITVLE  183 (558)
Q Consensus       139 ~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k~~GeL~LsL~y~p  183 (558)
                      ..+|++||++.|+|.+|..+.....||+|.+...|+|++.+.+.+
T Consensus        81 ~~~d~~lG~~~i~L~~l~~~~~~~~~~~L~~~~~g~i~~~l~~~~  125 (126)
T d1rlwa_          81 YVMDETLGTATFTVSSMKVGEKKEVPFIFNQVTEMVLEMSLEVAS  125 (126)
T ss_dssp             SSCCEEEEEEEEEGGGSCTTCEEEEEEEETTTEEEEEEEEEECCC
T ss_pred             CCCCCeEEEEEEEHHHccCCCeEEEEEEccCCCeEEEEEEEEEEe
Confidence            888999999999999999888899999999888899999998765

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.86  E-value=1.1e-21  Score=176.65  Aligned_cols=118  Identities=30%  Similarity=0.490  Sum_probs=106.8

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-CC
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-SP  127 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~~  127 (558)
                      .|.++|+|.|+...+.|+|+|++|+||++++..|.+||||++++.+   .+++|+++++|+||.|||+|.|.+...+ ..
T Consensus        20 ~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~~~~~~kT~~~~~t~~P~wne~f~f~i~~~~l~~   99 (143)
T d1rsya_          20 LGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPDKKKKFETKVHRKTLNPVFNEQFTFKVPYSELGG   99 (143)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETTCCSCEECCCCTTCSSCEEEEEEEECCCHHHHTT
T ss_pred             ceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCCCCeeEEEEEeccccCcceeeeeEEEEEeeccCC
Confidence            5788999999999999999999999999999999999999999943   6789999999999999999999986422 35


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCC
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQN  169 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~  169 (558)
                      ..|.|+|||++.++ +++||++.|+|.++..++....||+|+.
T Consensus       100 ~~L~i~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~W~~L~s  142 (143)
T d1rsya_         100 KTLVMAVYDFDRFSKHDIIGEFKVPMNTVDFGHVTEEWRDLQS  142 (143)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEGGGCCCSSCEEEEEECBC
T ss_pred             ceEEEEEEEcCCCCCCcEEEEEEEEchhccCCCCCccEEeCCC
Confidence            68999999999988 8899999999999998888899999974

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.85  E-value=1.5e-21  Score=173.91  Aligned_cols=124  Identities=20%  Similarity=0.277  Sum_probs=107.8

Q ss_pred             ecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeec-CCCCCccceEEEEeeccCCCCceEEEEEeecCC
Q 008661           61 VKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDH  139 (558)
Q Consensus        61 Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVik-kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~  139 (558)
                      +..+.|+|+|+|++|++|+.++..|.+||||++++++..++|++++ +++||+|||+|.|.+..  ....|.|+|||+|.
T Consensus         5 ~~~p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~~~~~t~~~~~~~~nP~Wne~f~f~v~~--~~~~L~v~V~d~d~   82 (136)
T d1wfja_           5 SSGPHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRTQDQKSNVAEGMGTTPEWNETFIFTVSE--GTTELKAKIFDKDV   82 (136)
T ss_dssp             CCCCEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSSCEEECCCCTTCCSSCEEEEEEEEEEES--SCCEEEEEECCSSS
T ss_pred             CCCCcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEeeeeEEEEEEecCCCcEEEeeEEEEEEcC--ccceEEEEEEEecC
Confidence            4567899999999999999999999999999999999999999987 69999999999999985  34579999999999


Q ss_pred             CC-CCccEEEEEecccccCC-CceeeeeecCC--CCceEEEEEEEEEeccC
Q 008661          140 FV-DDTLGDCTINISDLRDG-QRHDMWIPLQN--IKIGRLHLAITVLEESA  186 (558)
Q Consensus       140 ~s-DDfIGev~IpL~eL~~~-~~~e~W~~L~~--k~~GeL~LsL~y~p~~~  186 (558)
                      ++ |++||++.|+|.++... .....|+.|..  ...|+|+|.|+|.|...
T Consensus        83 ~~~d~~iG~~~i~L~~l~~~~~~~~~~~~l~~~~~~~G~i~l~l~~~p~~p  133 (136)
T d1wfja_          83 GTEDDAVGEATIPLEPVFVEGSIPPTAYNVVKDEEYKGEIWVALSFKPSGP  133 (136)
T ss_dssp             CTTTCCSEEEEEESHHHHHHSEEEEEEEEEEETTEEEEEEEEEEEEEECCS
T ss_pred             CCCCCEEEEEEEEhHHhcccCCcCcEEEEecCCCccCEEEEEEEEEEeCCC
Confidence            97 89999999999997543 44577998853  35699999999998653

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=3.7e-21  Score=170.65  Aligned_cols=119  Identities=28%  Similarity=0.408  Sum_probs=102.4

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      +.|+++++|.|++..+.|.|+|++|++|+.++..|.+||||++++.+   .+++|+++++|+||+|||+|.|.+...+ .
T Consensus         3 p~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~~~   82 (130)
T d1dqva1           3 PCGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPDRKKKFQTKVHRKTLNPIFNETFQFSVPLAELA   82 (130)
T ss_dssp             SSCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTSTTSCEECCCCCSCSSCEEEEEEEEECCGGGGS
T ss_pred             CcEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccCCCceEeceeEcCCCCeeeeeEEEEEEchHHcC
Confidence            45789999999999999999999999999999999999999999954   5789999999999999999999987533 3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccC--CCceeeeeecCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRD--GQRHDMWIPLQN  169 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~--~~~~e~W~~L~~  169 (558)
                      ...|.|+|||++.++ +++||++.|++.....  ......|++|.+
T Consensus        83 ~~~L~v~V~d~~~~~~d~~iG~~~i~~~~~l~~~~~~~~~W~~L~~  128 (130)
T d1dqva1          83 QRKLHFSVYDFDRFSRHDLIGQVVLDNLLELAEQPPDRPLWRDILE  128 (130)
T ss_dssp             SCCCEEEEEECCSSSCCCEEEEEECCCTTGGGSSCSSCCCCEECBC
T ss_pred             CCeEEEEEEEcCCCCCCceEEEEEECchhhhhcCCCCCcEEEeccc
Confidence            457999999999987 8999999998654322  234567999975

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2.5e-21  Score=171.78  Aligned_cols=118  Identities=31%  Similarity=0.476  Sum_probs=101.0

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeC-----CeEEEeeeecCCCCCccceEEEEeeccCCCC
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLG-----PYRFRTKTQRKTLSPKWHEEFNIPISTWDSP  127 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lg-----p~k~KTkVikkTlNPvWnEtF~F~V~~~e~~  127 (558)
                      |.+.+++.|  ..+.|+|+|++|++|++++..|.+||||++++.     ..+++|+++++|+||+|||+|.|.+...+..
T Consensus         4 G~i~l~~~~--~~~~L~V~V~~a~~L~~~d~~g~~DpYv~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~f~v~~~~~~   81 (132)
T d1a25a_           4 GRIYIQAHI--DREVLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKCSLNPEWNETFRFQLKESDKD   81 (132)
T ss_dssp             CEEEEEEEE--SSSEEEEEEEEEESCCCCSTTSCCCEEEEEEEESCTTCSSCEECCCCSSCSSCEEEEEEEEECCSGGGG
T ss_pred             cEEEEEEEe--cCCEEEEEEEeeeCCCCCCCCCCcCeEEEEEEccCCCCccccEEeeecCCCCCccceEEEEEeEccccC
Confidence            455666666  468899999999999999999999999999993     3678999999999999999999998754445


Q ss_pred             ceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCCCce
Q 008661          128 NVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNIKIG  173 (558)
Q Consensus       128 ~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k~~G  173 (558)
                      ..|.|+|||+|.++ |++||++.|+|.++..+ ..+.||+|.+...|
T Consensus        82 ~~L~i~V~d~d~~~~d~~iG~~~i~l~~l~~~-~~~~W~~L~~~~~g  127 (132)
T d1a25a_          82 RRLSVEIWDWDLTSRNDFMGSLSFGISELQKA-GVDGWFKLLSQEEG  127 (132)
T ss_dssp             CEEEEEEEECCSSSCCEEEEEEEEEHHHHTTC-CEEEEEECBCHHHH
T ss_pred             CEEeEEEEecCCCCCCcEeEEEEEeHHHcCCC-CCCeEEECCCCCCC
Confidence            68999999999998 89999999999998765 46889999875444

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=1.5e-21  Score=174.25  Aligned_cols=117  Identities=27%  Similarity=0.486  Sum_probs=102.0

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC--------------eEEEeeeecCCCCCccceEE
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP--------------YRFRTKTQRKTLSPKWHEEF  117 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp--------------~k~KTkVikkTlNPvWnEtF  117 (558)
                      .|.+.+++.|+  .+.|.|+|++|+||++++..|.+||||++++.+              .+++|+++++|+||.|||+|
T Consensus         6 ~G~l~lsl~y~--~~~L~V~V~~A~~L~~~d~~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wne~f   83 (142)
T d1rh8a_           6 TGEIQLQINYD--LGNLIIHILQARNLVPRDNNGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWNQTV   83 (142)
T ss_dssp             CCEEEEEEEEE--TTEEEEEEEEEESCCCCSSSSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEEEEE
T ss_pred             ceEEEEEEEEe--CCEEEEEEEEeECCCCcCCCCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeEEEE
Confidence            47888999996  589999999999999999999999999999954              13579999999999999999


Q ss_pred             EEeeccC-C-CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          118 NIPISTW-D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       118 ~F~V~~~-e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      .|.+... + ....|.|+|||+|.++ +++||++.|+|.++..+.....||+|+++
T Consensus        84 ~f~~~~~~~~~~~~L~i~V~d~d~~~~~~~lG~~~i~L~~l~~~~~~~~W~~L~~~  139 (142)
T d1rh8a_          84 IYKSISMEQLMKKTLEVTVWDYDRFSSNDFLGEVLIDLSSTSHLDNTPRWYPLKEQ  139 (142)
T ss_dssp             EECSCCHHHHTTCEEEEEEEEECSSSCEEEEEEEEEETTSCGGGTTCCEEEECBCC
T ss_pred             EEeeecccccCCCEEEEEEEEecCCCCCeeeEEEEEEhHHcCCCCCceEEEECcCc
Confidence            9974321 1 3568999999999988 88999999999999888888999999864

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=3.6e-20  Score=166.01  Aligned_cols=116  Identities=20%  Similarity=0.333  Sum_probs=103.4

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      .++++|+|.|+...+.|.|+|++|++|+   ..+.+||||+++|.+    ..++|++++++.||+|||+|.|.+...+ .
T Consensus        12 ~~~l~~sl~y~~~~~~L~V~v~~a~~L~---~~g~~dpyVkv~l~~~~~~~~~kT~v~~~~~~P~wne~f~f~v~~~~l~   88 (138)
T d1wfma_          12 APKLHYCLDYDCQKAELFVTRLEAVTSN---HDGGCDCYVQGSVANRTGSVEAQTALKKRQLHTTWEEGLVLPLAEEELP   88 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEECCC---CSSCCCEEEEEEEEETTEEEEEECCCCCCCSSEECSSCEEEECCTTSST
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEcCCCC---CCCCcCcEEEEEECCCCCccceeeeEECCCCCceEeeeEEEEeeehhcc
Confidence            4678999999999999999999999995   357899999999965    3578999999999999999999987543 3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecCCC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      ...|.|+|||++.++ +++||++.|+|.++......+.|++|++.
T Consensus        89 ~~~L~~~V~d~~~~~~~~~iG~~~i~L~~l~~~~~~~~W~~L~~~  133 (138)
T d1wfma_          89 TATLTLTLRTCDRFSRHSVAGELRLGLDGTSVPLGAAQWGELKTS  133 (138)
T ss_dssp             TCEEEEEEEECCSSCTTSCSEEEEEESSSSSSCTTCCEEEECCCC
T ss_pred             ceEEEEEEeeecccccceeeeEEEEEhHHccCCCCceEeEeCCCC
Confidence            568999999999998 89999999999999888888999999864

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.6e-20  Score=163.68  Aligned_cols=115  Identities=24%  Similarity=0.337  Sum_probs=96.3

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEe-eccCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIP-ISTWD-  125 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~-V~~~e-  125 (558)
                      |++.++|.|++..+.|.|+|++|+||++++..+.+||||++++.+     .+++|+++++++||.|||+|.|. +...+ 
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~f~~~~~~~l   80 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPDRSDKNKRRTKTVKKTLEPKWNQTFIYSPVHRREF   80 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESSCSGGGEEECCCCSSBSSCEEEEEEEECSCCGGGG
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCCCCCccccccCEEcCCCCCEEccEEEEeeeChhhc
Confidence            467899999999999999999999999999999999999999943     56899999999999999999996 44322 


Q ss_pred             CCceEEEEEeecCCCC---CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 SPNVLVIEVRDKDHFV---DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s---DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ....|.|+|||++.++   +++||++.|+|.++.... ...||+|+
T Consensus        81 ~~~~L~i~v~d~~~~~~~~~~~iG~~~i~l~~~~~~~-~~~Wy~L~  125 (125)
T d2bwqa1          81 RERMLEITLWDQARVREEESEFLGEILIELETALLDD-EPHWYKLQ  125 (125)
T ss_dssp             GGCEEEEEEEEC-------CEEEEEEEEEGGGCCCSS-CEEEEECC
T ss_pred             CCCEEEEEEEECCCCCCCCCeeEEEEEEEchhcCCCC-CCEEEeCc
Confidence            3458999999999874   569999999999987654 46799985

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=99.81  E-value=8e-20  Score=163.66  Aligned_cols=116  Identities=28%  Similarity=0.479  Sum_probs=101.9

Q ss_pred             ceEEEEEEEEecCCCCCC-----------CCCCCCcEEEEEeCCeE-EEeeeecCCCCCccceEEEEeeccCCCCceEEE
Q 008661           65 VAYARVEVVEASDMKPSD-----------LNGLADPYVKGQLGPYR-FRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVI  132 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D-----------~~G~sDPYVkV~Lgp~k-~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V  132 (558)
                      .|.|+|+|++|++|++.+           ..+.+||||+++++... .+|+++.++.||.|||+|.|.+..   .+.|.|
T Consensus         5 ~G~L~v~I~~A~~L~~~~~~~~~~~~~~~~~~~~DPYv~v~l~~~~~~~T~~~~~t~~P~Wne~f~f~v~~---~~~l~i   81 (136)
T d1gmia_           5 NGLLKIKICEAVSLKPTAWSLRDAVGPRPQTFLLDPYIALNVDDSRIGQTATKQKTNSPAWHDEFVTDVCN---GRKIEL   81 (136)
T ss_dssp             EEEEEEEEEEEESCCCCHHHHCC-CCSSCCCCCCCEEEEEEETTEEEEECCCCSSCSSCEEEEEEEEEEEE---ECEEEE
T ss_pred             EEEEEEEEEEeECCCcccccccccccccCCCCCcCcEEEEEeCCCcCcEeeEEcCCCCccCccEEEEEEec---CCceEE
Confidence            589999999999999754           35779999999998855 589999999999999999999975   468999


Q ss_pred             EEeecCCCC-CCccEEEEEecccccCCC--ceeeeeecCCCCceEEEEEEEEEecc
Q 008661          133 EVRDKDHFV-DDTLGDCTINISDLRDGQ--RHDMWIPLQNIKIGRLHLAITVLEES  185 (558)
Q Consensus       133 ~V~D~D~~s-DDfIGev~IpL~eL~~~~--~~e~W~~L~~k~~GeL~LsL~y~p~~  185 (558)
                      +|||++.++ |++||.+.|+|.++....  ..+.|++|++  .|+|+|.+.+.+.+
T Consensus        82 ~V~d~~~~~~d~~iG~~~i~l~~l~~~~~~~~~~w~~L~p--~G~v~l~v~~~~~~  135 (136)
T d1gmia_          82 AVFHDAPIGYDDFVANCTIQFEELLQNGSRHFEDWIDLEP--EGKVYVIIDLSGSS  135 (136)
T ss_dssp             EEEECCSSSSCEEEEEEEEEHHHHTSTTCSEEEEEEECBS--SCEEEEEEEEEEEE
T ss_pred             EEEEecCCCCceeEEEEEEEHHHhhhcCCcceeEEEeCCC--CcEEEEEEEEEeCC
Confidence            999999988 899999999999996554  3678999984  79999999998864

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.5e-19  Score=158.77  Aligned_cols=114  Identities=29%  Similarity=0.410  Sum_probs=97.6

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-C
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-S  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-~  126 (558)
                      |.++++|.|.+..+.|.|+|++|+||+.++..+.+||||++++.+     .+++|++++++.||.|||+|.|.+...+ .
T Consensus         2 G~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~v~~~t~~P~wne~f~f~v~~~~l~   81 (137)
T d2cm5a1           2 GKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKPDMGKKAKHKTQIKKKTLNPEFNEEFFYDIKHSDLA   81 (137)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETC---CCEEECCCCCSCSSCEEEEEEEEECCGGGGG
T ss_pred             cEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEcCCccceeecCEeEcCCCCCccceEEEEEeEHHHcc
Confidence            678899999999999999999999999999899999999999843     5679999999999999999999987533 3


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                      ...|.|.|||++.++ +++||+|.|+|..+..  ....|+.|.
T Consensus        82 ~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~--~~~~W~~l~  122 (137)
T d2cm5a1          82 KKSLDISVWDYDIGKSNDYIGGCQLGISAKGE--RLKHWYECL  122 (137)
T ss_dssp             GCEEEEEEEECCSSSCCEEEEEEEEETTCCHH--HHHHHHHHH
T ss_pred             ccEEEEEeeeCCCCCCCCEEEEEEeCccccCc--chhhhhhHh
Confidence            458999999999987 8999999999986532  234565554

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.2e-19  Score=164.08  Aligned_cols=119  Identities=25%  Similarity=0.369  Sum_probs=102.7

Q ss_pred             CCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC-
Q 008661           52 QPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD-  125 (558)
Q Consensus        52 ~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e-  125 (558)
                      -|+++++|.|++..+.|.|+|++|+||+..+..+.+||||++++.+     ...+|+++++++||+|||+|.|.+...+ 
T Consensus        11 ~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~~~~~~~~~kT~v~~~t~nP~wne~f~F~v~~~~l   90 (157)
T d1uowa_          11 LGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTIKKNTLNPYYNESFSFEVPFEQI   90 (157)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEETTEEEEEEECCCCCSCSSCEEEEEEEEECCGGGG
T ss_pred             eeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEecCCccccceecccccCCCCcccCCeEEEEecHHHc
Confidence            5789999999999999999999999999999999999999999954     3468999999999999999999987543 


Q ss_pred             CCceEEEEEeecCCCC-CCccEEEEEeccccc------------CCCceeeeeecCCC
Q 008661          126 SPNVLVIEVRDKDHFV-DDTLGDCTINISDLR------------DGQRHDMWIPLQNI  170 (558)
Q Consensus       126 ~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~------------~~~~~e~W~~L~~k  170 (558)
                      ....|.|.|||++.++ +++||++.|+|..+.            .......|+.|+..
T Consensus        91 ~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~~~  148 (157)
T d1uowa_          91 QKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQVE  148 (157)
T ss_dssp             GGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECBCH
T ss_pred             CccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCCCC
Confidence            2458999999999998 999999999997642            23456789998753

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.5e-19  Score=158.15  Aligned_cols=119  Identities=25%  Similarity=0.331  Sum_probs=99.9

Q ss_pred             CCCCCceeEeeecCCceEEEEEEEEecCCCCCCCCC-CCCcEEEEEeCC---eEEEeeeecCCCCCccceEEEEe-eccC
Q 008661           50 SPQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNG-LADPYVKGQLGP---YRFRTKTQRKTLSPKWHEEFNIP-ISTW  124 (558)
Q Consensus        50 s~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G-~sDPYVkV~Lgp---~k~KTkVikkTlNPvWnEtF~F~-V~~~  124 (558)
                      .+-|+++|+|.|+...+.|.|+|++|+||+.++..+ .+||||++++.+   .+++|+++++++||.|||+|.|. +...
T Consensus         6 ~~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~~~~~~kT~v~~~t~nP~wne~f~f~~~~~~   85 (138)
T d1ugka_           6 SGLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPEKKHKVKTRVLRKTLDPAFDETFTFYGIPYT   85 (138)
T ss_dssp             CCCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETTTCSEEECCCCSSCSSCEEEEEEEEECCCST
T ss_pred             CCCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCCCCEeEeCeeEeCCCCCceeeEEEEeeeCHH
Confidence            345889999999999999999999999999988665 489999999943   67899999999999999999996 4432


Q ss_pred             C-CCceEEEEEeecCCCC-CCccEEEEEecccccCCC-ceeeeeecC
Q 008661          125 D-SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQ-RHDMWIPLQ  168 (558)
Q Consensus       125 e-~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~-~~e~W~~L~  168 (558)
                      + ....|+|+|||+|.++ +++||++.|+|.++...+ ....|+.+.
T Consensus        86 ~l~~~~L~~~V~d~d~~~~~~~iG~~~i~L~~~~~~~~~~~~~~~~~  132 (138)
T d1ugka_          86 QIQELALHFTILSFDRFSRDDIIGEVLIPLSGIELSEGKMLMNREII  132 (138)
T ss_dssp             TGGGCEEEEEEEEECSSCCCCCCEEEEEECTTCCCTTCCEEEEEECB
T ss_pred             HcccceEEEEEEECCCCCCCcEEEEEEEEcccccCCCCeEEEEeecc
Confidence            2 2458999999999988 999999999999986543 455666654

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.9e-19  Score=159.66  Aligned_cols=103  Identities=21%  Similarity=0.233  Sum_probs=86.4

Q ss_pred             CCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCC-
Q 008661           53 PGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDS-  126 (558)
Q Consensus        53 ~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~-  126 (558)
                      |++.++|.|.+..+.|.|+|++|++|++++..+.+||||++++.+     .+.+|++++++.||.|||+|.|.+...+. 
T Consensus         2 G~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~~~   81 (138)
T d1w15a_           2 GELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYHAKKRISKKKTHVKKCTPNAVFNELFVFDIPCESLE   81 (138)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEETTEEEEEEECCCCCSCSSEEEEEEEEEECCSSSST
T ss_pred             cEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeCCcccCccccceeECCCCCCeECcEEEEEecHHHhC
Confidence            678899999999999999999999999999999999999999933     45689999999999999999999875443 


Q ss_pred             CceEEEEEeecCCCC-CCccEEEEEecccc
Q 008661          127 PNVLVIEVRDKDHFV-DDTLGDCTINISDL  155 (558)
Q Consensus       127 ~~tL~V~V~D~D~~s-DDfIGev~IpL~eL  155 (558)
                      ...|.|.|||++.++ +++||+|.|+|...
T Consensus        82 ~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~  111 (138)
T d1w15a_          82 EISVEFLVLDSERGSRNEVIGRLVLGATAE  111 (138)
T ss_dssp             TEEEEEEEEECCTTSCCEEEEEEEESTTCC
T ss_pred             ccEEEEEEEeCCCCCCCCEEEEEEEcchhC
Confidence            447999999999987 99999999999864

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=3.4e-19  Score=159.14  Aligned_cols=116  Identities=19%  Similarity=0.257  Sum_probs=96.1

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC-CC
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV-DD  143 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s-DD  143 (558)
                      .++|.|+|++|++|+..+..+.+||||++.++++.++|+++++|+||.|||.|.|.+..   ...|.|+|||++.++ |+
T Consensus         5 ~~~L~v~v~~A~~~~~~~~~~~~dpyv~v~~~~~~~kT~v~~~t~nP~wne~f~f~~~~---~~~l~~~V~d~d~~~~d~   81 (133)
T d2nq3a1           5 KSQLQITVISAKLKENKKNWFGPSPYVEVTVDGQSKKTEKCNNTNSPKWKQPLTVIVTP---VSKLHFRVWSHQTLKSDV   81 (133)
T ss_dssp             CEEEEEEEEEEEECCCC--CCCCCEEEEEEETTEEEECCCCSSCSSCEEEEEEEEEECT---TCEEEEEEEECCSSSCCE
T ss_pred             ceEEEEEEEEeECCCcCCCCCCcCeEEEEEECCeEEeeEEEEecccEEEcceEEEEEEe---cceeEEEEEEccCCCCCc
Confidence            37899999999999998888899999999999999999999999999999999999875   458999999999998 89


Q ss_pred             ccEEEEEecccccCC-----CceeeeeecCC-----CCceEEEEEEEEEe
Q 008661          144 TLGDCTINISDLRDG-----QRHDMWIPLQN-----IKIGRLHLAITVLE  183 (558)
Q Consensus       144 fIGev~IpL~eL~~~-----~~~e~W~~L~~-----k~~GeL~LsL~y~p  183 (558)
                      +||++.|+|.++...     .....|+.|..     ...|+|.|.|.+..
T Consensus        82 ~iG~~~i~L~~l~~~~~~~~~~~~~~l~l~~~~~~~~~~G~L~v~l~~~~  131 (133)
T d2nq3a1          82 LLGTAALDIYETLKSNNMKLEEVVVTLQLGGDKEPTETIGDLSICLDGLQ  131 (133)
T ss_dssp             EEEEEEEEHHHHHHHTTTEESSEEEEEEEEESSCTTSEEEEEEEEEESEE
T ss_pred             eEEEEEEEHHHhhhhcCCceeeEEEEEecCCCCCCceEEEEEEEEEeeEE
Confidence            999999999987432     12344555533     24599998887654

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=2.3e-19  Score=161.33  Aligned_cols=117  Identities=24%  Similarity=0.381  Sum_probs=99.1

Q ss_pred             CCCCceeEeeecCCceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCC
Q 008661           51 PQPGNWFSVDVKEPVAYARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWD  125 (558)
Q Consensus        51 ~~~~l~fSL~Yd~~~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e  125 (558)
                      .-|++.|+|.|.+..+.|.|+|++|+||+..+..+.+||||++++.+     .+.+|+++++|+||.|||+|.|.+...+
T Consensus         5 ~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~~~~~~~~~kT~~~~~t~~P~wne~f~F~v~~~~   84 (145)
T d1dqva2           5 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKKNTLNPTYNEALVFDVAPES   84 (145)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCTTCCTTSCEECCCCCSCSSCEEEECCCCCCCSGG
T ss_pred             cceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEccCCccceeecCEEEeCCCCceecceEEEEEehhh
Confidence            35789999999999999999999999999999899999999999966     3578999999999999999999887433


Q ss_pred             -CCceEEEEEeecCCCC-CCccEEEEEecccccCCCceeeeeecC
Q 008661          126 -SPNVLVIEVRDKDHFV-DDTLGDCTINISDLRDGQRHDMWIPLQ  168 (558)
Q Consensus       126 -~~~tL~V~V~D~D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~  168 (558)
                       ....|.|.|||++.++ +++||++.|+|..+... ...+|++|.
T Consensus        85 ~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~-~~~~W~~l~  128 (145)
T d1dqva2          85 VENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPH-GREHWAEML  128 (145)
T ss_dssp             GGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHH-HHHHHHTSS
T ss_pred             cCCCEEEEEEEecCCCCCCcEEEEEEECchHcCch-hhHHHHHHH
Confidence             3457999999999998 88999999999876422 234555553

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.1e-17  Score=148.22  Aligned_cols=113  Identities=20%  Similarity=0.332  Sum_probs=88.5

Q ss_pred             eEEEEEEEEecCCCCC--CCCCCCCcEEEEEeC-----CeEEEeeeec-CCCCCccceEEEEeeccCCCCceEEEEEeec
Q 008661           66 AYARVEVVEASDMKPS--DLNGLADPYVKGQLG-----PYRFRTKTQR-KTLSPKWHEEFNIPISTWDSPNVLVIEVRDK  137 (558)
Q Consensus        66 G~L~VtVieArdL~~~--D~~G~sDPYVkV~Lg-----p~k~KTkVik-kTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~  137 (558)
                      ..|+|+|++|++|+..  +.++.+||||++++.     ..+++|++++ +++||.|||+|.|.+... ....|+|+|||+
T Consensus         4 ~~l~V~Vi~a~~L~~~~~~~~~~~DPyV~v~l~g~~~~~~~~~T~~v~~~~~nP~wne~f~f~~~~~-~~~~L~~~V~D~   82 (131)
T d1qasa2           4 ERLRVRIISGQQLPKVNKNKNSIVDPKVIVEIHGVGRDTGSRQTAVITNNGFNPRWDMEFEFEVTVP-DLALVRFMVEDY   82 (131)
T ss_dssp             EEEEEEEEEEESCCCCC-----CCCEEEEEEEESSTTTCEEEECCCCSSCSSSCEEEEEEEEEESCG-GGCEEEEEEEEC
T ss_pred             EEEEEEEEEeeCCCCCCCCCCCCcCeEEEEEEccCCCCcEEEEEEEEecccCCceEEEEEEEEEEcc-hhceEEEEEEEe
Confidence            4799999999999754  457889999999983     3678999876 558999999999988742 345899999999


Q ss_pred             CCCC-CCccEEEEEecccccCCCceeeeeecCCC-----CceEEEEEEEEE
Q 008661          138 DHFV-DDTLGDCTINISDLRDGQRHDMWIPLQNI-----KIGRLHLAITVL  182 (558)
Q Consensus       138 D~~s-DDfIGev~IpL~eL~~~~~~e~W~~L~~k-----~~GeL~LsL~y~  182 (558)
                      |.++ |++||++.|+|..+..+   ..|++|.+.     ..++|.+.+.+.
T Consensus        83 d~~~~d~~iG~~~i~l~~l~~g---~~~~~L~~~~g~~~~~~~L~v~i~~~  130 (131)
T d1qasa2          83 DSSSKNDFIGQSTIPWNSLKQG---YRHVHLLSKNGDQHPSATLFVKISIQ  130 (131)
T ss_dssp             CTTTCCEEEEEEEEEGGGBCCE---EEEEEEECTTSCEEEEEEEEEEEEEE
T ss_pred             cCCCCCcEEEEEEEEEeccCCC---CEEEECCCCCcCCCCCCEEEEEEEEE
Confidence            9998 88999999999998764   358888653     235677777654

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.3e-17  Score=148.75  Aligned_cols=99  Identities=21%  Similarity=0.318  Sum_probs=86.3

Q ss_pred             ceEEEEEEEEecCCCCCCCCCCCCcEEEEEeCCeEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCCCCc
Q 008661           65 VAYARVEVVEASDMKPSDLNGLADPYVKGQLGPYRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFVDDT  144 (558)
Q Consensus        65 ~G~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~sDDf  144 (558)
                      ++.|.|+|++|++|++++   .+||||++.++..+.+|.+++ +.||.|||+|.|.+..  ....|.|+|||++.++|++
T Consensus         1 ~~~L~V~v~~a~~l~~~~---~~dpYv~l~~~~~k~~T~~~k-~~nP~Wne~f~f~v~~--~~~~L~v~V~d~~~~~d~~   74 (128)
T d2cjta1           1 MSLLCVGVKKAKFDGAQE---KFNTYVTLKVQNVKSTTIAVR-GSQPSWEQDFMFEINR--LDLGLTVEVWNKGLIWDTM   74 (128)
T ss_dssp             CEEEEEEEEEEECSSCGG---GCEEEEEEEETTEEEECCCEE-SSSCEEEEEEEEEECC--CSSEEEEEEEECCSSCEEE
T ss_pred             CeEEEEEEEEEECCCCCC---CcCeEEEEEeCCEEEEEEEec-CCCCeEEEEEEEeecc--ccceEEEEEEeCCCcCCcc
Confidence            367999999999999866   589999999999999999886 4599999999999986  3568999999999888999


Q ss_pred             cEEEEEecccccCC--CceeeeeecCC
Q 008661          145 LGDCTINISDLRDG--QRHDMWIPLQN  169 (558)
Q Consensus       145 IGev~IpL~eL~~~--~~~e~W~~L~~  169 (558)
                      ||++.|+|.++...  .....||+|..
T Consensus        75 lG~~~I~L~~l~~~~~~~~~~W~~L~~  101 (128)
T d2cjta1          75 VGTVWIPLRTIRQSNEEGPGEWLTLDS  101 (128)
T ss_dssp             EEEEEEEGGGSCBCSSCCCCEEEECBC
T ss_pred             eEEEEEEehhhccCCCCCCCeeEECCc
Confidence            99999999998643  34578999964

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=3.2e-16  Score=138.43  Aligned_cols=107  Identities=15%  Similarity=0.352  Sum_probs=87.6

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC-----eEEEeeeecCCCCCccceEEEEeeccCCCCceEEEEEeecCCCC
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP-----YRFRTKTQRKTLSPKWHEEFNIPISTWDSPNVLVIEVRDKDHFV  141 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp-----~k~KTkVikkTlNPvWnEtF~F~V~~~e~~~tL~V~V~D~D~~s  141 (558)
                      .+.|.++.+..++.  .++.+||||+|++.+     ...+|+++++|+||+|||+|.|.+..   .+.|.|.|||+|   
T Consensus         6 ~~~~~~~~~~~~~~--~~~~~dPY~~v~l~~~~~~~~~~~t~~~kkT~nP~WnE~F~~~v~~---~~~l~i~V~d~d---   77 (123)
T d1bdya_           6 RISFNSYELGSLQA--EDDASQPFCAVKMKEALTTDRGKTLVQKKPTMYPEWKSTFDAHIYE---GRVIQIVLMRAA---   77 (123)
T ss_dssp             EEEEEEEECCTTCC--CCCSCCCEEEEEEEEECCGGGTTBEEECSCCBCCCTTCEEEEECCT---TCEEEEEEEEET---
T ss_pred             EEEEEEeecccCCC--CCCCCCCEEEEEEcCccccccceEEEEeCCCCCcccceEEEEEEcc---ccEEEEEEEEcc---
Confidence            34455555555544  578999999999955     24679999999999999999999975   468999999986   


Q ss_pred             CCccEEEEEeccccc-----CCCceeeeeecCCCCceEEEEEEEEEe
Q 008661          142 DDTLGDCTINISDLR-----DGQRHDMWIPLQNIKIGRLHLAITVLE  183 (558)
Q Consensus       142 DDfIGev~IpL~eL~-----~~~~~e~W~~L~~k~~GeL~LsL~y~p  183 (558)
                      ++++|.+.|++..|.     .+...+.|++|+  ..|+|+|.+.|..
T Consensus        78 d~~~g~~~i~l~~l~~~~~~~~~~~~~W~~L~--~~Gkl~l~v~~f~  122 (123)
T d1bdya_          78 EDPMSEVTVGVSVLAERCKKNNGKAEFWLDLQ--PQAKVLMCVQYFL  122 (123)
T ss_dssp             TEEEEEEEEEHHHHHHHHHTTTTEEEEEEECB--SSCEEEEEEEEEE
T ss_pred             ccccCccEEehhheeeccccCCCcccEEEeCC--CCEEEEEEEEEec
Confidence            679999999999884     355688999998  5899999999975

>d1w15a_ b.7.1.2 (A:) Synaptotagmin IV {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.61  E-value=1.8e-16  Score=141.29  Aligned_cols=115  Identities=15%  Similarity=0.166  Sum_probs=90.5

Q ss_pred             ceEEEEEEEEEeccCCC----------------CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAKQ----------------GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~l----------------~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      +|+|+|+|+|.+..+++                +.+||||+++|..   .+.+..++||.+++++.||+|| |.|.|. +
T Consensus         1 rG~l~~sl~Y~~~~~~L~V~v~~a~~L~~~~~~~~~dpyvkv~l~~---~~~~~~~~kT~~~~~t~~P~wn-e~f~F~v~   76 (138)
T d1w15a_           1 RGELLVSLCYQSTTNTLTVVVLKARHLPKSDVSGLSDPYVKVNLYH---AKKRISKKKTHVKKCTPNAVFN-ELFVFDIP   76 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCC------CCCEEEEEEEEE---TTEEEEEEECCCCCSCSSEEEE-EEEEEECC
T ss_pred             CcEEEEEEEEcCCCCEEEEEEEEeECCCCCCCCCCcCEEEEEEEeC---CcccCccccceeECCCCCCeEC-cEEEEEec
Confidence            58899999998876652                2378999999943   4667788899999999999999 999999 7


Q ss_pred             CCCCCCCceEEEEEeccCc--ccc-ceE-EecCCc-cccccCccccCCCCCcccceeecCC
Q 008661          235 SEKSPKVADNFEPINIEGQ--QET-GIW-VHQPGS-EVAQTWEPRKGKNRRLDTLVRRVPN  290 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG~--~e~-Gv~-v~~pgt-~~~~hW~~~l~~~r~~~~q~~~~~~  290 (558)
                      .+.+....+.|+|||++..  ++. |-. +..... ...+||.+|+.+||+|++|||.+-+
T Consensus        77 ~~~~~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~ll~~~~k~i~~Wh~L~~  137 (138)
T d1w15a_          77 CESLEEISVEFLVLDSERGSRNEVIGRLVLGATAEGSGGGHWKEICDFPRRQIAKWHMLCD  137 (138)
T ss_dssp             SSSSTTEEEEEEEEECCTTSCCEEEEEEEESTTCCSHHHHHHHHHHHSTTCCEEEEEECBC
T ss_pred             HHHhCccEEEEEEEeCCCCCCCCEEEEEEEcchhCCchHHHHHHHHhCCCCeeeECeEccc
Confidence            8888889999999999843  333 543 322211 1248999999999999999998754

>d1uowa_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=7.1e-16  Score=140.49  Aligned_cols=115  Identities=18%  Similarity=0.216  Sum_probs=91.2

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|.|+|+|.+..++                .+.+||||+++|..   .+++..++||.++++++||+|| |.|.|. 
T Consensus        10 ~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyV~v~l~~---~~~~~~~~kT~v~~~t~nP~wn-e~f~F~v   85 (157)
T d1uowa_          10 KLGDICFSLRYVPTAGKLTVVILEAKNLKKMDVGGLSDPYVKIHLMQ---NGKRLKKKKTTIKKNTLNPYYN-ESFSFEV   85 (157)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEEE---TTEEEEEEECCCCCSCSSCEEE-EEEEEEC
T ss_pred             eeeEEEEEEEEcCCCCEEEEEEEEEEEcccccCCCCCCeeEEEEEec---CCccccceecccccCCCCcccC-CeEEEEe
Confidence            46888888888887654                23389999999944   4677788899999999999999 999999 


Q ss_pred             CCCCCCCCceEEEEEeccCc--ccc-ceE-EecCCcc-ccccCccccCCCCCcccceeecC
Q 008661          234 SSEKSPKVADNFEPINIEGQ--QET-GIW-VHQPGSE-VAQTWEPRKGKNRRLDTLVRRVP  289 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~--~e~-Gv~-v~~pgt~-~~~hW~~~l~~~r~~~~q~~~~~  289 (558)
                      +..++....+.++|||++..  ++. |-. +.....+ ..+||.+|+.+||+|+++||.+-
T Consensus        86 ~~~~l~~~~l~i~v~d~~~~~~~~~iG~~~i~l~~~~~~~~hW~~~~~~~~~~v~~Wh~L~  146 (157)
T d1uowa_          86 PFEQIQKVQVVVTVLDYDKIGKNDAIGKVFVGYNSTGAELRHWSDMLANPRRPIAQWHTLQ  146 (157)
T ss_dssp             CGGGGGGCEEEEEEEECCSSSCCCEEEEEEEETTCCHHHHHHHHHHHHSTTCCEEEEEECB
T ss_pred             cHHHcCccEEEEEEcccCCCCCCceeEEEEEecccCChhHHHHHHHHhCCCCceeEeEeCC
Confidence            77888889999999999854  333 543 4332222 24899999999999999999875

>d1dqva2 b.7.1.2 (A:425-569) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.56  E-value=2.8e-16  Score=140.88  Aligned_cols=115  Identities=14%  Similarity=0.218  Sum_probs=89.3

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+|+|+|.+..+.                .+.+||||+++|..   ++++..++||.++++++||+|| |.|.|. 
T Consensus         5 ~~G~l~~sl~Y~~~~~~L~V~V~~a~nL~~~~~~~~~dpyv~v~l~~---~~~~~~~~kT~~~~~t~~P~wn-e~f~F~v   80 (145)
T d1dqva2           5 DLGELNFSLCYLPTAGLLTVTIIKASNLKAMDLTGFSDPYVKASLIS---EGRRLKKRKTSIKKNTLNPTYN-EALVFDV   80 (145)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSSSSCCCEEEEECCCT---TCCTTSCEECCCCCSCSSCEEE-ECCCCCC
T ss_pred             cceEEEEEEEEcCCCCEEEEEEEEEeCCCCcCCCCCcCceEEEEEcc---CCccceeecCEEEeCCCCceec-ceEEEEE
Confidence            56888888888876654                22378999999943   4566677899999999999999 999998 


Q ss_pred             CCCCCCCCceEEEEEeccCcccc---ceEEecCC---ccccccCccccCCCCCcccceeecC
Q 008661          234 SSEKSPKVADNFEPINIEGQQET---GIWVHQPG---SEVAQTWEPRKGKNRRLDTLVRRVP  289 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG~~e~---Gv~v~~pg---t~~~~hW~~~l~~~r~~~~q~~~~~  289 (558)
                      +.+.+....+.|+|+|+++....   |.......   ....+||.+|+.+||.|++|||.+.
T Consensus        81 ~~~~~~~~~l~v~v~d~~~~~~~~~iG~~~i~l~~~~~~~~~~W~~l~~~p~~~i~~Wh~L~  142 (145)
T d1dqva2          81 APESVENVGLSIAVVDYDCIGHNEVIGVCRVGPEAADPHGREHWAEMLANPRKPVEHWHQLV  142 (145)
T ss_dssp             CSGGGGSCCCCCEEEECCSSSCCEEEEECCCSSCTTCHHHHHHHHTSSSSSSSCSCSCCCCB
T ss_pred             ehhhcCCCEEEEEEEecCCCCCCcEEEEEEECchHcCchhhHHHHHHHhCCCCeeeEeEECC
Confidence            77788889999999998754332   53321221   2234899999999999999999875

>d2cm5a1 b.7.1.2 (A:541-677) C2b-domain of rabphilin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2b-domain of rabphilin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=3.8e-15  Score=131.39  Aligned_cols=114  Identities=11%  Similarity=0.092  Sum_probs=87.1

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      +|+|+|+|+|.+..++                .+.+||||+++|..   .++...++||.++++++||+|| |.|.|. +
T Consensus         1 rG~l~l~l~Y~~~~~~L~V~v~~a~nL~~~~~~~~~dpyv~v~l~~---~~~~~~~~kT~v~~~t~~P~wn-e~f~f~v~   76 (137)
T d2cm5a1           1 RGKILVSLMYSTQQGGLIVGIIRCVHLAAMDANGYSDPFVKLWLKP---DMGKKAKHKTQIKKKTLNPEFN-EEFFYDIK   76 (137)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEET---C---CCEEECCCCCSCSSCEEE-EEEEEECC
T ss_pred             CcEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCcCeEEEEEEEc---CCccceeecCEeEcCCCCCccc-eEEEEEeE
Confidence            5888888888876654                23388999999943   4666788899999999999999 999999 7


Q ss_pred             CCCCCCCceEEEEEeccC--cccc-ceE-EecCCc-cccccCccccCCCCCcccceeecC
Q 008661          235 SEKSPKVADNFEPINIEG--QQET-GIW-VHQPGS-EVAQTWEPRKGKNRRLDTLVRRVP  289 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG--~~e~-Gv~-v~~pgt-~~~~hW~~~l~~~r~~~~q~~~~~  289 (558)
                      ..++....+.+++||++.  .++. |-. +..... +...||.+|+.+|++|+++||.+-
T Consensus        77 ~~~l~~~~l~v~v~~~~~~~~~~~iG~~~i~l~~~~~~~~~W~~l~~~~~~~v~~Wh~L~  136 (137)
T d2cm5a1          77 HSDLAKKSLDISVWDYDIGKSNDYIGGCQLGISAKGERLKHWYECLKNKDKKIERWHQLQ  136 (137)
T ss_dssp             GGGGGGCEEEEEEEECCSSSCCEEEEEEEEETTCCHHHHHHHHHHHHCTTCCEEEEEECB
T ss_pred             HHHccccEEEEEeeeCCCCCCCCEEEEEEeCccccCcchhhhhhHhhCCCCeeeEceecc
Confidence            778888999999999873  3332 533 333222 234899999999999999999763

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=8.2e-13  Score=116.15  Aligned_cols=93  Identities=25%  Similarity=0.367  Sum_probs=70.3

Q ss_pred             EEEEEEEEecCCCCCCCCCCCCcEEEEEeCC------eEEEeee--ecCCCCCccceE-EEEe-eccCCCCceEEEEEee
Q 008661           67 YARVEVVEASDMKPSDLNGLADPYVKGQLGP------YRFRTKT--QRKTLSPKWHEE-FNIP-ISTWDSPNVLVIEVRD  136 (558)
Q Consensus        67 ~L~VtVieArdL~~~D~~G~sDPYVkV~Lgp------~k~KTkV--ikkTlNPvWnEt-F~F~-V~~~e~~~tL~V~V~D  136 (558)
                      +|+|+|++|++|+..    ..||||+|+|-+      .+.+|++  ..+++||.|||+ |.|. +.. +....|+|.|||
T Consensus         2 tl~V~Visaq~L~~~----~~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~-~~l~~L~f~V~D   76 (122)
T d2zkmx2           2 TLSITVISGQFLSER----SVRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILM-PELASLRVAVME   76 (122)
T ss_dssp             EEEEEEEEEESCCSS----CCCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESS-GGGCEEEEEEEE
T ss_pred             EEEEEEEEeeCCCCC----CCCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCC-CcccEEEEEEEC
Confidence            689999999999764    489999999821      3444544  468999999976 4443 332 233489999999


Q ss_pred             cCCCCCCccEEEEEecccccCCCceeeeeecCCC
Q 008661          137 KDHFVDDTLGDCTINISDLRDGQRHDMWIPLQNI  170 (558)
Q Consensus       137 ~D~~sDDfIGev~IpL~eL~~~~~~e~W~~L~~k  170 (558)
                      +|   +++||++.+||+.+..|.   +|++|.+.
T Consensus        77 ~d---~~~lG~~~ipl~~l~~Gy---R~vpL~~~  104 (122)
T d2zkmx2          77 EG---NKFLGHRIIPINALNSGY---HHLCLHSE  104 (122)
T ss_dssp             TT---TEEEEEEEEEGGGBCCEE---EEEEEECT
T ss_pred             CC---CCEEEEEEEEcccCcCCc---eEEEccCC
Confidence            76   789999999999998764   45677654

>d1dqva1 b.7.1.2 (A:295-424) Synaptotagmin III {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin III
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.94  E-value=2.4e-10  Score=100.06  Aligned_cols=75  Identities=15%  Similarity=0.194  Sum_probs=57.2

Q ss_pred             ceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-C
Q 008661          172 IGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-S  234 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p  234 (558)
                      .|+|+|+|+|.+..++                .+.+||||++++...     ..+++||.++++|+||+|| |.|.|. +
T Consensus         4 ~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyv~v~l~~~-----~~~~~kT~v~~~t~~P~wn-e~f~f~v~   77 (130)
T d1dqva1           4 CGRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-----RKKKFQTKVHRKTLNPIFN-ETFQFSVP   77 (130)
T ss_dssp             SCEEEEEEECCSSSCEEEEEEEEEECCCCCSTTSCCCEEEEEECTTS-----TTSCEECCCCCSCSSCEEE-EEEEEECC
T ss_pred             cEEEEEEEEEECCCCEEEEEEEeeeCCccccCCCCcceEEEEEEccC-----CCceEeceeEcCCCCeeee-eEEEEEEc
Confidence            4666666666554433                334799999999433     2246899999999999999 999999 6


Q ss_pred             CCCCCCCceEEEEEeccC
Q 008661          235 SEKSPKVADNFEPINIEG  252 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG  252 (558)
                      ..++....+.|+|||++.
T Consensus        78 ~~~~~~~~L~v~V~d~~~   95 (130)
T d1dqva1          78 LAELAQRKLHFSVYDFDR   95 (130)
T ss_dssp             GGGGSSCCCEEEEEECCS
T ss_pred             hHHcCCCeEEEEEEEcCC
Confidence            677778889999999984

>d1wfma_ b.7.1.2 (A:) Synaptotagmin XIII {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin XIII
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-09  Score=96.46  Aligned_cols=77  Identities=10%  Similarity=0.097  Sum_probs=59.3

Q ss_pred             ceEEEEEEEEEeccCC-------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-CCCC
Q 008661          172 IGRLHLAITVLEESAK-------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-SSEK  237 (558)
Q Consensus       172 ~GeL~LsL~y~p~~~~-------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-p~e~  237 (558)
                      .|+|+++|.|.....+             .+.+||||+++|.+.    ....++||.++++++||+|| |.|.|. +.++
T Consensus        12 ~~~l~~sl~y~~~~~~L~V~v~~a~~L~~~g~~dpyVkv~l~~~----~~~~~~kT~v~~~~~~P~wn-e~f~f~v~~~~   86 (138)
T d1wfma_          12 APKLHYCLDYDCQKAELFVTRLEAVTSNHDGGCDCYVQGSVANR----TGSVEAQTALKKRQLHTTWE-EGLVLPLAEEE   86 (138)
T ss_dssp             CCEEEEEEEEETTTTEEEEEEEEEECCCCSSCCCEEEEEEEEET----TEEEEEECCCCCCCSSEECS-SCEEEECCTTS
T ss_pred             CCEEEEEEEECCCCCEEEEEEEEcCCCCCCCCcCcEEEEEECCC----CCccceeeeEECCCCCceEe-eeEEEEeeehh
Confidence            3555555555544433             234899999999543    44567899999999999999 999999 7788


Q ss_pred             CCCCceEEEEEeccCc
Q 008661          238 SPKVADNFEPINIEGQ  253 (558)
Q Consensus       238 l~~v~leveV~D~dG~  253 (558)
                      +....|.|+|||++..
T Consensus        87 l~~~~L~~~V~d~~~~  102 (138)
T d1wfma_          87 LPTATLTLTLRTCDRF  102 (138)
T ss_dssp             STTCEEEEEEEECCSS
T ss_pred             ccceEEEEEEeeeccc
Confidence            8899999999998843

>d2bwqa1 b.7.1.2 (A:729-853) Regulating synaptic membrane exocytosis protein, rim2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Regulating synaptic membrane exocytosis protein, rim2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=1.1e-09  Score=94.87  Aligned_cols=76  Identities=5%  Similarity=-0.003  Sum_probs=58.5

Q ss_pred             eEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec--C
Q 008661          173 GRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV--S  234 (558)
Q Consensus       173 GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe--p  234 (558)
                      |+|+|+|+|.+...+                .+.+||||+++|.+.   .....++||.++++++||+|| |.|.|.  +
T Consensus         1 G~l~l~l~y~~~~~~L~V~V~~a~~L~~~~~~~~~dpyVkv~l~~~---~~~~~~~kT~~~~~t~~P~wn-e~f~f~~~~   76 (125)
T d2bwqa1           1 GQLSIKLWFDKVGHQLIVTILGAKDLPSREDGRPRNPYVKIYFLPD---RSDKNKRRTKTVKKTLEPKWN-QTFIYSPVH   76 (125)
T ss_dssp             CEEEEEEEEETTTTEEEEEEEEEESCCCCTTSCCBCEEEEEEEESS---CSGGGEEECCCCSSBSSCEEE-EEEEECSCC
T ss_pred             CEEEEEEEEECCCCEEEEEEEEeECCCCcCCCCCCCEEEEEEEeCC---CCCccccccCEEcCCCCCEEc-cEEEEeeeC
Confidence            677777777665544                233789999999543   344567899999999999999 999996  5


Q ss_pred             CCCCCCCceEEEEEeccC
Q 008661          235 SEKSPKVADNFEPINIEG  252 (558)
Q Consensus       235 ~e~l~~v~leveV~D~dG  252 (558)
                      .+++....+.|+|||++.
T Consensus        77 ~~~l~~~~L~i~v~d~~~   94 (125)
T d2bwqa1          77 RREFRERMLEITLWDQAR   94 (125)
T ss_dssp             GGGGGGCEEEEEEEEC--
T ss_pred             hhhcCCCEEEEEEEECCC
Confidence            667778899999999874

>d1rsya_ b.7.1.2 (A:) Synaptogamin I {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptogamin I
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.79  E-value=1.3e-09  Score=96.54  Aligned_cols=76  Identities=11%  Similarity=0.123  Sum_probs=59.2

Q ss_pred             CceEEEEEEEEEeccCC----------------CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec-
Q 008661          171 KIGRLHLAITVLEESAK----------------QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV-  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe-  233 (558)
                      ..|+|+++|.|.+...+                .+.+||||++++...     ..+++||.++++++||+|| |.|.|. 
T Consensus        19 ~~G~l~~sl~y~~~~~~L~V~V~~a~~L~~~~~~g~~dpyV~v~l~~~-----~~~~~kT~~~~~t~~P~wn-e~f~f~i   92 (143)
T d1rsya_          19 KLGKLQYSLDYDFQNNQLLVGIIQAAELPALDMGGTSDPYVKVFLLPD-----KKKKFETKVHRKTLNPVFN-EQFTFKV   92 (143)
T ss_dssp             CCCEEEEEEEEETTTTEEEEEEEEEESCCCCSTTSCCCEEEEEEEETT-----CCSCEECCCCTTCSSCEEE-EEEEECC
T ss_pred             cceEEEEEEEEeCCCCEEEEEEEEccCCCCCCCCCCCCeEEEEEEcCC-----CCeeEEEEEeccccCccee-eeeEEEE
Confidence            46888888887665443                234799999999443     2245789999999999999 999998 


Q ss_pred             CCCCCCCCceEEEEEeccC
Q 008661          234 SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       234 p~e~l~~v~leveV~D~dG  252 (558)
                      +..++....+.|+|||++.
T Consensus        93 ~~~~l~~~~L~i~V~d~d~  111 (143)
T d1rsya_          93 PYSELGGKTLVMAVYDFDR  111 (143)
T ss_dssp             CHHHHTTCEEEEEEEECCS
T ss_pred             EeeccCCceEEEEEEEcCC
Confidence            5556677889999999874

>d1a25a_ b.7.1.2 (A:) C2 domain from protein kinase c (beta) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain from protein kinase c (beta)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.78  E-value=2.2e-09  Score=93.72  Aligned_cols=61  Identities=15%  Similarity=0.089  Sum_probs=48.2

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG  252 (558)
                      .+.+||||++++...   +....++||.++++|+||+|| |.|.|..........+.|+|||++.
T Consensus        33 ~g~~DpYv~v~l~~~---~~~~~~~kT~v~~~t~nP~wn-e~f~f~v~~~~~~~~L~i~V~d~d~   93 (132)
T d1a25a_          33 NGLSDPYVKLKLIPD---PKSESKQKTKTIKCSLNPEWN-ETFRFQLKESDKDRRLSVEIWDWDL   93 (132)
T ss_dssp             TSCCCEEEEEEEESC---TTCSSCEECCCCSSCSSCEEE-EEEEEECCSGGGGCEEEEEEEECCS
T ss_pred             CCCcCeEEEEEEccC---CCCccccEEeeecCCCCCccc-eEEEEEeEccccCCEEeEEEEecCC
Confidence            345899999999544   445567899999999999999 9999984344445579999999874

>d1ugka_ b.7.1.2 (A:) Synaptotagmin IV {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Synaptotagmin IV
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.4e-09  Score=93.55  Aligned_cols=76  Identities=16%  Similarity=0.192  Sum_probs=59.2

Q ss_pred             CceEEEEEEEEEeccCC----------------CC-CCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeec
Q 008661          171 KIGRLHLAITVLEESAK----------------QG-VDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSV  233 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~~~----------------l~-lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fe  233 (558)
                      ..|+|+++|+|.+..+.                .+ .+||||++++.+.     ...++||.++++++||+|| |.|.|.
T Consensus         7 ~~G~l~~sl~Y~~~~~~L~V~V~~a~~L~~~d~~~~~~dpyV~v~l~~~-----~~~~~kT~v~~~t~nP~wn-e~f~f~   80 (138)
T d1ugka_           7 GLGTLFFSLEYNFERKAFVVNIKEARGLPAMDEQSMTSDPYIKMTILPE-----KKHKVKTRVLRKTLDPAFD-ETFTFY   80 (138)
T ss_dssp             CCCEEEEEEEEEGGGTEEEEEEEEEESCCCCBTTTTBCEEEEEEEEETT-----TCSEEECCCCSSCSSCEEE-EEEEEE
T ss_pred             CCEEEEEEEEEeCCCCEEEEEEEEecCCCCCCCCCCccceEEEEEEcCC-----CCEeEeCeeEeCCCCCcee-eEEEEe
Confidence            35788888888765443                11 2689999999543     2345789999999999999 999995


Q ss_pred             --CCCCCCCCceEEEEEeccC
Q 008661          234 --SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       234 --p~e~l~~v~leveV~D~dG  252 (558)
                        +..++....+.|+|||++.
T Consensus        81 ~~~~~~l~~~~L~~~V~d~d~  101 (138)
T d1ugka_          81 GIPYTQIQELALHFTILSFDR  101 (138)
T ss_dssp             CCCSTTGGGCEEEEEEEEECS
T ss_pred             eeCHHHcccceEEEEEEECCC
Confidence              6677888899999999874

>d1rh8a_ b.7.1.2 (A:) Piccolo {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: Piccolo
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.40  E-value=1.1e-08  Score=89.62  Aligned_cols=64  Identities=11%  Similarity=-0.031  Sum_probs=48.2

Q ss_pred             CCCCCCcceEEecccCCCC------ceeeEEEeEecCCCCCCccCCCceeec--CCCCCCCCceEEEEEeccC
Q 008661          188 QGVDSPCDGGTLNKEGMGN------KEDQSNKEDIRESFANETTDKGSFSSV--SSEKSPKVADNFEPINIEG  252 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~------krlkKKKT~VkK~TlNPvwN~E~F~Fe--p~e~l~~v~leveV~D~dG  252 (558)
                      .+.+||||++++.......      ....++||.++++++||+|| |.|.|.  +.+++....|.++|||++.
T Consensus        36 ~g~~DpyV~v~l~~~~~~~~~~~~~~~~~~~kT~v~~~t~nP~wn-e~f~f~~~~~~~~~~~~L~i~V~d~d~  107 (142)
T d1rh8a_          36 NGYSDPFVKVYLLPGRGQVMVVQNASAEYKRRTKYVQKSLNPEWN-QTVIYKSISMEQLMKKTLEVTVWDYDR  107 (142)
T ss_dssp             SSCSCCEEEEEETTSSCCCEECCCCCHHHHTTTTTTHHHHSCEEE-EEEEECSCCHHHHTTCEEEEEEEEECS
T ss_pred             CCCCCcCEEEEEecCcccccccccCCCceeeeccCCcCCCCceeE-EEEEEeeecccccCCCEEEEEEEEecC
Confidence            3458999999995432111      12234689999999999999 999997  4556778899999999974

>d1bdya_ b.7.1.1 (A:) Domain from protein kinase C delta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C delta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=1.9e-06  Score=74.73  Aligned_cols=57  Identities=7%  Similarity=0.006  Sum_probs=42.5

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE  251 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d  251 (558)
                      .+.+|||++++++...   ...++++|.++++|+||+|| |.|.|...+   ...+++.|||+|
T Consensus        21 ~~~~dPY~~v~l~~~~---~~~~~~~t~~~kkT~nP~Wn-E~F~~~v~~---~~~l~i~V~d~d   77 (123)
T d1bdya_          21 DDASQPFCAVKMKEAL---TTDRGKTLVQKKPTMYPEWK-STFDAHIYE---GRVIQIVLMRAA   77 (123)
T ss_dssp             CCSCCCEEEEEEEEEC---CGGGTTBEEECSCCBCCCTT-CEEEEECCT---TCEEEEEEEEET
T ss_pred             CCCCCCEEEEEEcCcc---ccccceEEEEeCCCCCcccc-eEEEEEEcc---ccEEEEEEEEcc
Confidence            5568999999995431   11233568889999999999 899998332   346889999886

>d2ep6a1 b.7.1.1 (A:92-217) Multiple C2 and transmembrane domain-containing protein 2, MCTP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Multiple C2 and transmembrane domain-containing protein 2, MCTP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=4.3e-06  Score=71.66  Aligned_cols=72  Identities=11%  Similarity=0.060  Sum_probs=51.5

Q ss_pred             CceEEEEEEEEEecc---CCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEE
Q 008661          171 KIGRLHLAITVLEES---AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEP  247 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~---~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV  247 (558)
                      +-|.|.+.+---..-   ...+.+||||++.+..        .++||.++++|+||+|| |.|.|...+.  ...+.++|
T Consensus         4 ~~G~L~V~v~~A~~L~~~d~~g~~Dpyv~v~~~~--------~~~~T~~~~~t~nP~wn-e~f~f~v~~~--~~~L~i~V   72 (126)
T d2ep6a1           4 DVGILQVKVLKAADLLAADFSGKSDPFCLLELGN--------DRLQTHTVYKNLNPEWN-KVFTFPIKDI--HDVLEVTV   72 (126)
T ss_dssp             CSEEEEEEEEEEESCCCSSSSSCCCEEEEEEETT--------EEEECCCCSSCSSCCCC-EEEEEEESCT--TCEEEEEE
T ss_pred             ccEEEEEEEEEeECCCCCCCCCCcCeEEEEEcCC--------eEEEEEeeCCceeEEEE-EEEEEEEecc--CceeEEEE
Confidence            357766666433222   2345689999999932        35799999999999999 9999992221  34789999


Q ss_pred             EeccCc
Q 008661          248 INIEGQ  253 (558)
Q Consensus       248 ~D~dG~  253 (558)
                      ||++..
T Consensus        73 ~d~~~~   78 (126)
T d2ep6a1          73 FDEDGD   78 (126)
T ss_dssp             EEEETT
T ss_pred             EEccCC
Confidence            998743

>d1rlwa_ b.7.1.1 (A:) Domain from cytosolic phospholipase A2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from cytosolic phospholipase A2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.9e-06  Score=73.61  Aligned_cols=58  Identities=7%  Similarity=0.024  Sum_probs=45.4

Q ss_pred             CCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          189 GVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       189 ~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      +.+||||++++..     ...+++||.++++++||+|| |.|.|.. .......+.++|||++..
T Consensus        25 ~~~Dpyv~v~l~~-----~~~~~~~T~~~~~t~nP~wn-e~f~f~i-~~~~~~~L~v~V~d~d~~   82 (126)
T d1rlwa_          25 DTPDPYVELFIST-----TPDSRKRTRHFNNDINPVWN-ETFEFIL-DPNQENVLEITLMDANYV   82 (126)
T ss_dssp             CCCCEEEEEECTT-----STTCCEECCCCTTCSSCEEE-EEEEEEE-CTTSCCEEEEEEEECCSS
T ss_pred             CCCCcEEEEEECC-----cccceeEeeecCCCccceec-eeeeecc-cCcccCcEEEEEEECCCC
Confidence            4589999999932     23456899999999999999 8999982 344456789999998743

>d2zkmx2 b.7.1.1 (X:678-799) Phospholipase C-beta-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Phospholipase C-beta-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=1.1e-05  Score=69.71  Aligned_cols=61  Identities=8%  Similarity=-0.173  Sum_probs=40.9

Q ss_pred             CCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEecc
Q 008661          191 DSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIE  251 (558)
Q Consensus       191 sDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~d  251 (558)
                      .||||++.|.....+..+..+++|.++.+++||+||++.|.|..........+.|.|||++
T Consensus        18 ~dPyV~V~l~g~~~D~~~~~~t~~~~~~n~~nP~wne~~~~~~~~~~~~l~~L~f~V~D~d   78 (122)
T d2zkmx2          18 VRTYVEVELFGLPGDPKRRYRTKLSPSTNSINPVWKEEPFVFEKILMPELASLRVAVMEEG   78 (122)
T ss_dssp             CCEEEEEEEECCTTSCCCCEECCCCSSSCCSSCBCCCCCEEEEEESSGGGCEEEEEEEETT
T ss_pred             CCcEEEEEEECcCCCCCccEEEEEEEeCCeecceEcccEeEEEecCCCcccEEEEEEECCC
Confidence            6899999995422223334444455567889999996656665333444567899999975

>d2nq3a1 b.7.1.1 (A:13-145) E3 ubiquitin-protein ligase Itchy {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: E3 ubiquitin-protein ligase Itchy
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=8.7e-06  Score=70.92  Aligned_cols=54  Identities=13%  Similarity=0.005  Sum_probs=42.4

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+-.||||++.+..        +++||.++++|+||+|| |.|.|....   ...+.|+|||++..
T Consensus        24 ~~~~dpyv~v~~~~--------~~~kT~v~~~t~nP~wn-e~f~f~~~~---~~~l~~~V~d~d~~   77 (133)
T d2nq3a1          24 WFGPSPYVEVTVDG--------QSKKTEKCNNTNSPKWK-QPLTVIVTP---VSKLHFRVWSHQTL   77 (133)
T ss_dssp             CCCCCEEEEEEETT--------EEEECCCCSSCSSCEEE-EEEEEEECT---TCEEEEEEEECCSS
T ss_pred             CCCcCeEEEEEECC--------eEEeeEEEEecccEEEc-ceEEEEEEe---cceeEEEEEEccCC
Confidence            34489999999932        25789999999999999 899998221   24689999999843

>d1wfja_ b.7.1.2 (A:) C2 domain protein At1g63220 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: Synaptotagmin-like (S variant)
domain: C2 domain protein At1g63220
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.81  E-value=1.1e-05  Score=69.92  Aligned_cols=72  Identities=14%  Similarity=0.033  Sum_probs=49.9

Q ss_pred             CceEEEEEEEEEecc---CCCCCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeecCCCCCCCCceEEE
Q 008661          171 KIGRLHLAITVLEES---AKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSVSSEKSPKVADNFE  246 (558)
Q Consensus       171 ~~GeL~LsL~y~p~~---~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fep~e~l~~v~leve  246 (558)
                      ..|.|.+.|.--..-   ...+.+|||+++++..        .+++|++.+ +++||+|| |.|.|...+  ....|.|+
T Consensus         8 p~G~L~V~v~~a~~L~~~d~~g~~Dpyv~v~~~~--------~~~~t~~~~~~~~nP~Wn-e~f~f~v~~--~~~~L~v~   76 (136)
T d1wfja_           8 PHGTLEVVLVSAKGLEDADFLNNMDPYVQLTCRT--------QDQKSNVAEGMGTTPEWN-ETFIFTVSE--GTTELKAK   76 (136)
T ss_dssp             CEEEEEEEEEEEEECSSCCSSCSSCCCEEEESSS--------CEEECCCCTTCCSSCEEE-EEEEEEEES--SCCEEEEE
T ss_pred             CcEEEEEEEEEeeCCCCCCCCCCCCccEEEEEee--------eeEEEEEEecCCCcEEEe-eEEEEEEcC--ccceEEEE
Confidence            457777766543332   2345689999999932        245677765 68999999 899998322  22358999


Q ss_pred             EEeccCc
Q 008661          247 PINIEGQ  253 (558)
Q Consensus       247 V~D~dG~  253 (558)
                      |||++..
T Consensus        77 V~d~d~~   83 (136)
T d1wfja_          77 IFDKDVG   83 (136)
T ss_dssp             ECCSSSC
T ss_pred             EEEecCC
Confidence            9999844

>d1qasa2 b.7.1.1 (A:626-756) PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: PI-specific phospholipase C isozyme D1 (PLC-D1), C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.80  E-value=9.8e-06  Score=70.14  Aligned_cols=60  Identities=10%  Similarity=0.018  Sum_probs=41.6

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecC-CCCCCccCCCceeec-CCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRE-SFANETTDKGSFSSV-SSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK-~TlNPvwN~E~F~Fe-p~e~l~~v~leveV~D~dG~  253 (558)
                      .+.+||||+++|...   .....++||++++ +++||+|| |.|.|. ....  ...+.++|||++..
T Consensus        24 ~~~~DPyV~v~l~g~---~~~~~~~~T~~v~~~~~nP~wn-e~f~f~~~~~~--~~~L~~~V~D~d~~   85 (131)
T d1qasa2          24 NSIVDPKVIVEIHGV---GRDTGSRQTAVITNNGFNPRWD-MEFEFEVTVPD--LALVRFMVEDYDSS   85 (131)
T ss_dssp             --CCCEEEEEEEESS---TTTCEEEECCCCSSCSSSCEEE-EEEEEEESCGG--GCEEEEEEEECCTT
T ss_pred             CCCcCeEEEEEEccC---CCCcEEEEEEEEecccCCceEE-EEEEEEEEcch--hceEEEEEEEecCC
Confidence            345899999999432   1223556787665 55899999 899997 3332  34689999999844

>d1gmia_ b.7.1.1 (A:) Domain from protein kinase C epsilon {Rat (Rattus rattus) [TaxId: 10117]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Domain from protein kinase C epsilon
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=97.70  E-value=2.3e-05  Score=68.35  Aligned_cols=55  Identities=4%  Similarity=-0.058  Sum_probs=42.5

Q ss_pred             CCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          188 QGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       188 l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      .+..|||+++.++..       ..+||.+++++.||+|| |.|.|...   ....+.++|||.+..
T Consensus        35 ~~~~DPYv~v~l~~~-------~~~~T~~~~~t~~P~Wn-e~f~f~v~---~~~~l~i~V~d~~~~   89 (136)
T d1gmia_          35 TFLLDPYIALNVDDS-------RIGQTATKQKTNSPAWH-DEFVTDVC---NGRKIELAVFHDAPI   89 (136)
T ss_dssp             CCCCCEEEEEEETTE-------EEEECCCCSSCSSCEEE-EEEEEEEE---EECEEEEEEEECCSS
T ss_pred             CCCcCcEEEEEeCCC-------cCcEeeEEcCCCCccCc-cEEEEEEe---cCCceEEEEEEecCC
Confidence            345899999999322       44679999999999999 99999822   124688999998854

>d2cjta1 b.7.1.1 (A:1-128) Unc-13 homolog A {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: C2 domain-like
superfamily: C2 domain (Calcium/lipid-binding domain, CaLB)
family: PLC-like (P variant)
domain: Unc-13 homolog A
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.30  E-value=0.00018  Score=62.45  Aligned_cols=67  Identities=7%  Similarity=-0.115  Sum_probs=44.8

Q ss_pred             EEEEEEEEeccCCCCCCCCcceEEecccCCCCceeeEEEeEecCCCCCCccCCCceeecCCCCCCCCceEEEEEeccCc
Q 008661          175 LHLAITVLEESAKQGVDSPCDGGTLNKEGMGNKEDQSNKEDIRESFANETTDKGSFSSVSSEKSPKVADNFEPINIEGQ  253 (558)
Q Consensus       175 L~LsL~y~p~~~~l~lsDPyVKv~L~~~~~~~krlkKKKT~VkK~TlNPvwN~E~F~Fep~e~l~~v~leveV~D~dG~  253 (558)
                      |++.+.--..-...+..||||++.+..        .+.+|.+++ +.||+|| |.|.|...+.  ...+.++|||.+..
T Consensus         4 L~V~v~~a~~l~~~~~~dpYv~l~~~~--------~k~~T~~~k-~~nP~Wn-e~f~f~v~~~--~~~L~v~V~d~~~~   70 (128)
T d2cjta1           4 LCVGVKKAKFDGAQEKFNTYVTLKVQN--------VKSTTIAVR-GSQPSWE-QDFMFEINRL--DLGLTVEVWNKGLI   70 (128)
T ss_dssp             EEEEEEEEECSSCGGGCEEEEEEEETT--------EEEECCCEE-SSSCEEE-EEEEEEECCC--SSEEEEEEEECCSS
T ss_pred             EEEEEEEEECCCCCCCcCeEEEEEeCC--------EEEEEEEec-CCCCeEE-EEEEEeeccc--cceEEEEEEeCCCc
Confidence            444444333333344479999999921        356777775 5699999 9999993222  34689999998643