Citrus Sinensis ID: 008666

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MNLEIRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR
cccEEEEEEEcccccEEEEcccccccEEEcccEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHcccEEEEEEccccccccccccccEEEEEEEcccccEEEEEEEEEHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEHHHcccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccEEEEEEEccccEEEEccccccHHHHcccccccccccccccHHEEEEEEEEEcccc
ccEEEEEEEcccccEEEEEEccccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEcccEEEcccHHHccEEEEEEEEccccccccccccHHHHccccccccccccccccEEEccccccccccccccccccccccEEEEEEHHHHHHHccHHHcccccHHHHcHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHHccccEEEEccccEccccccccccEEEEEEccccEEEEEccEEEHHHHHHHccccccccHccHHHHHHHHHccEEEEEEEEEEcccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccHHHHHHHccccccccHHHccccccccccccccccccccHHHHHHHccccccccHHHHHHccccccccccccccccccccEEEEEEEcccccEEEEccccccHHHHHccccccccccccccHHHHEEEEEcccccc
MNLEIRYRIqsdrkvavcsvhpseqatLQCLGcvkakipvaksyhcspkcfsdawQHHRVLHDRAASavnengneeeELFGRfnstgsgvinaslsgsasnssltngstplypaavtrsggetwfevgrsktytpsaddigHVLKFECVVvdaetklpvghpntlltsrvipapspsprrlfpvngsdmnmmghidsdgrisstgTFSVLSYNILSDVyatsesysycpswaLSWAYRRQNLLREIIGYRADIVCLQEvqndhfeeffapeldkhgyqALYKrktnevyngnphtidgcatffrrdrfshvkKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAkfsnqgadtpgkrQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAasadipmlvcgdfnsvpgsaphallamgkvepvhpdlavdpltilrphtklthqlplvsaysSFARigvglgmehqrrrmdpttneplfthctrdfigTLDYIFYTADSLSVESLLELLdedslrkdtalpspewssDHIALLAEFrckprarr
mnleiryriqsdrkvavCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTytpsaddigHVLKFECVVVDAEtklpvghpntlltsrvipapspspRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRktnevyngnphTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKfsnqgadtpGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLgmehqrrrmdpttneplfthCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTAlpspewssdhiallaefrckprarr
MNLEIRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVnengneeeeLFGRFNSTGSGVINaslsgsasnssltngstPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTAdslsvesllelldedslRKDTALPSPEWSSDHIALLAEFRCKPRARR
******YRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDR*************************************************AAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTS********************************ISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGME**********NEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLD******************HIALLAEF********
**LEIRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLH***********************T**GVINASL******************************EVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNG*******************TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEF*CKPR***
MNLEIRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLS*********NGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR
MNLEIRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNE***********************************GSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGS****MGH***DGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKP****
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MNLEIRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSGGETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q8W0Z9602 Carbon catabolite repress yes no 0.973 0.900 0.777 0.0
Q9M2F8603 Carbon catabolite repress no no 0.980 0.905 0.765 0.0
O74874690 Glucose-repressible alcoh yes no 0.556 0.449 0.336 5e-51
Q4P9T3670 Glucose-repressible alcoh N/A no 0.569 0.473 0.339 7e-51
Q1EA11758 Glucose-repressible alcoh N/A no 0.590 0.434 0.317 6e-49
A2BHJ4559 CCR4-NOT transcription co no no 0.587 0.584 0.331 8e-49
Q6CEJ6705 Glucose-repressible alcoh yes no 0.552 0.436 0.326 1e-47
Q9ULM6557 CCR4-NOT transcription co yes no 0.615 0.615 0.319 5e-47
Q5BJ41552 CCR4-NOT transcription co N/A no 0.642 0.648 0.313 1e-46
Q6AXU9557 CCR4-NOT transcription co yes no 0.635 0.635 0.313 1e-46
>sp|Q8W0Z9|CCR4A_ARATH Carbon catabolite repressor protein 4 homolog 1 OS=Arabidopsis thaliana GN=CCR4-1 PE=2 SV=1 Back     alignment and function desciption
 Score =  863 bits (2231), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/554 (77%), Positives = 487/554 (87%), Gaps = 12/554 (2%)

Query: 7   YRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 66
           +R+QSD+KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAA
Sbjct: 54  FRVQSDKKVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAA 113

Query: 67  SAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVTR---SGGET 123
           SA  E GN+EEEL  R NS+      +     +++ SLTNGS+ +YP+A+T+   +GGET
Sbjct: 114 SAATE-GNDEEEL-PRLNSS-----GSGSGVLSTSVSLTNGSSSVYPSAITQKTGAGGET 166

Query: 124 WFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFP 183
             EVGRSKTYTP ADDI HVLKFECVVV+AETK  VG   T+LTSRVIPAPSPSPRRL  
Sbjct: 167 LVEVGRSKTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLIS 226

Query: 184 VNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLL 243
           ++G+D+   GH+DS+GR  S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLL
Sbjct: 227 ISGTDVT--GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLL 284

Query: 244 REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFF 303
           REI+ YRADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV+ GN +TIDGCATFF
Sbjct: 285 REIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFF 344

Query: 304 RRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 363
           RRDRFSHVKKYEVEFNKAAQSLT+AI+P +QKKNALNRLVKDNVALIVVLEAKF +Q AD
Sbjct: 345 RRDRFSHVKKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVKDNVALIVVLEAKFGSQAAD 404

Query: 364 TPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 423
            PGKRQLLCVANTHVNV  ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN+VP SA
Sbjct: 405 NPGKRQLLCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASA 464

Query: 424 PHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRM 483
           PH LLA+GKV+P+HPDL VDPL ILRPH+KLTHQLPLVSAYS FA++G  +  E QRRR+
Sbjct: 465 PHTLLAVGKVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRL 524

Query: 484 DPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHI 543
           DP ++EPLFT+CTRDFIGTLDYIFYTAD+L+VESLLELLDE+SLRKDTALPSPEWSSDHI
Sbjct: 525 DPASSEPLFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHI 584

Query: 544 ALLAEFRCKPRARR 557
           ALLAEFRC PRARR
Sbjct: 585 ALLAEFRCMPRARR 598
Acts as catalytic component of the CCR4-NOT core complex, which in the nucleus seems to be a general transcription factor, and in the cytoplasm the major mRNA deadenylase involved in mRNA turnover.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: 4
>sp|Q9M2F8|CCR4B_ARATH Carbon catabolite repressor protein 4 homolog 2 OS=Arabidopsis thaliana GN=CCR4-2 PE=2 SV=2 Back     alignment and function description
>sp|O74874|CCR4_SCHPO Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ccr4 PE=3 SV=1 Back     alignment and function description
>sp|Q4P9T3|CCR4_USTMA Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CCR4 PE=3 SV=1 Back     alignment and function description
>sp|Q1EA11|CCR4_COCIM Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Coccidioides immitis (strain RS) GN=CCR4 PE=3 SV=2 Back     alignment and function description
>sp|A2BHJ4|CNO6L_DANRE CCR4-NOT transcription complex subunit 6-like OS=Danio rerio GN=cnot6l PE=2 SV=1 Back     alignment and function description
>sp|Q6CEJ6|CCR4_YARLI Glucose-repressible alcohol dehydrogenase transcriptional effector OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=CCR4 PE=3 SV=1 Back     alignment and function description
>sp|Q9ULM6|CNOT6_HUMAN CCR4-NOT transcription complex subunit 6 OS=Homo sapiens GN=CNOT6 PE=1 SV=2 Back     alignment and function description
>sp|Q5BJ41|CNOT6_XENLA CCR4-NOT transcription complex subunit 6 OS=Xenopus laevis GN=cnot6 PE=2 SV=1 Back     alignment and function description
>sp|Q6AXU9|CNOT6_RAT CCR4-NOT transcription complex subunit 6 OS=Rattus norvegicus GN=Cnot6 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
255580696603 carbon catabolite repressor protein, put 0.985 0.910 0.896 0.0
224139930603 predicted protein [Populus trichocarpa] 0.985 0.910 0.896 0.0
224088166602 predicted protein [Populus trichocarpa] 0.985 0.911 0.892 0.0
225441541603 PREDICTED: carbon catabolite repressor p 0.985 0.910 0.894 0.0
147789110603 hypothetical protein VITISV_044263 [Viti 0.985 0.910 0.894 0.0
449480842603 PREDICTED: carbon catabolite repressor p 0.985 0.910 0.820 0.0
115481988605 Os10g0412100 [Oryza sativa Japonica Grou 0.982 0.904 0.785 0.0
356572657600 PREDICTED: carbon catabolite repressor p 0.978 0.908 0.837 0.0
356505479602 PREDICTED: carbon catabolite repressor p 0.978 0.905 0.837 0.0
115450953607 Os03g0166800 [Oryza sativa Japonica Grou 0.985 0.904 0.789 0.0
>gi|255580696|ref|XP_002531170.1| carbon catabolite repressor protein, putative [Ricinus communis] gi|223529240|gb|EEF31213.1| carbon catabolite repressor protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  998 bits (2580), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 495/552 (89%), Positives = 529/552 (95%), Gaps = 3/552 (0%)

Query: 7   YRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 66
           YRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCS KCFSDAWQHHRVLHDRAA
Sbjct: 54  YRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSTKCFSDAWQHHRVLHDRAA 113

Query: 67  SAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAVT-RSGGETWF 125
           SAV+ENGN+EEE+FGRFNSTGSGV+N SLS SAS +SLTNGS PLYPAAV  RSGGETWF
Sbjct: 114 SAVSENGNDEEEVFGRFNSTGSGVLNTSLSSSASTASLTNGSAPLYPAAVAQRSGGETWF 173

Query: 126 EVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFPVN 185
           EVGRSKTYTPSADDIGHVLKFECVVVDAE+KLPVGHPNT+LTSRVIPAPSP+PRRL PV+
Sbjct: 174 EVGRSKTYTPSADDIGHVLKFECVVVDAESKLPVGHPNTILTSRVIPAPSPTPRRLIPVS 233

Query: 186 GSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLRE 245
           G D+  MGH+DSDGRISS+GTF+VLSYNILSDVYATSE+YSYCPSWALSW YRRQNLLRE
Sbjct: 234 GIDV--MGHLDSDGRISSSGTFTVLSYNILSDVYATSETYSYCPSWALSWPYRRQNLLRE 291

Query: 246 IIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRR 305
           I+GYRADIVCLQEVQNDH+EEFFAPELDKHGYQALYKRKTNEVY+GN  TIDGCATFFRR
Sbjct: 292 IVGYRADIVCLQEVQNDHYEEFFAPELDKHGYQALYKRKTNEVYSGNSPTIDGCATFFRR 351

Query: 306 DRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTP 365
           DRFSHVKKYEVEFNKAAQSLT+A++PSAQ+K ALNRLVKDNVALIVVLEAKFSNQGAD P
Sbjct: 352 DRFSHVKKYEVEFNKAAQSLTEAVVPSAQRKTALNRLVKDNVALIVVLEAKFSNQGADNP 411

Query: 366 GKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPH 425
           GKRQLLCVANTHVN+H +LKDVKLWQV TLLKGLEKIAASADIPMLVCGDFNS+PGSAPH
Sbjct: 412 GKRQLLCVANTHVNIHHDLKDVKLWQVLTLLKGLEKIAASADIPMLVCGDFNSMPGSAPH 471

Query: 426 ALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDP 485
           +LLAMGKV+P+HPDL +DPL ILRPH+KLTHQLPLVSAYSSFAR+GVGLG+E QRRRMDP
Sbjct: 472 SLLAMGKVDPLHPDLVIDPLGILRPHSKLTHQLPLVSAYSSFARLGVGLGLEQQRRRMDP 531

Query: 486 TTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIAL 545
            TNEPLFT+CTRDFIGTLDYIFYTADSL+VESLLELLDE+SLRKDTALPSPEWSSDHIAL
Sbjct: 532 ATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIAL 591

Query: 546 LAEFRCKPRARR 557
           LAEFRCKPR RR
Sbjct: 592 LAEFRCKPRPRR 603

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224139930|ref|XP_002323345.1| predicted protein [Populus trichocarpa] gi|118486421|gb|ABK95050.1| unknown [Populus trichocarpa] gi|222867975|gb|EEF05106.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224088166|ref|XP_002308351.1| predicted protein [Populus trichocarpa] gi|222854327|gb|EEE91874.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225441541|ref|XP_002280990.1| PREDICTED: carbon catabolite repressor protein 4 homolog 1 [Vitis vinifera] gi|297739794|emb|CBI29976.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147789110|emb|CAN73496.1| hypothetical protein VITISV_044263 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449480842|ref|XP_004156011.1| PREDICTED: carbon catabolite repressor protein 4 homolog 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|115481988|ref|NP_001064587.1| Os10g0412100 [Oryza sativa Japonica Group] gi|78708623|gb|ABB47598.1| endonuclease/exonuclease/phosphatase family protein, putative, expressed [Oryza sativa Japonica Group] gi|78708624|gb|ABB47599.1| endonuclease/exonuclease/phosphatase family protein, putative, expressed [Oryza sativa Japonica Group] gi|113639196|dbj|BAF26501.1| Os10g0412100 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|356572657|ref|XP_003554483.1| PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356505479|ref|XP_003521518.1| PREDICTED: carbon catabolite repressor protein 4 homolog 2-like [Glycine max] Back     alignment and taxonomy information
>gi|115450953|ref|NP_001049077.1| Os03g0166800 [Oryza sativa Japonica Group] gi|108706369|gb|ABF94164.1| Endonuclease/Exonuclease/phosphatase family protein, expressed [Oryza sativa Japonica Group] gi|108706370|gb|ABF94165.1| Endonuclease/Exonuclease/phosphatase family protein, expressed [Oryza sativa Japonica Group] gi|113547548|dbj|BAF10991.1| Os03g0166800 [Oryza sativa Japonica Group] gi|125585049|gb|EAZ25713.1| hypothetical protein OsJ_09546 [Oryza sativa Japonica Group] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2076426602 AT3G58560 "AT3G58560" [Arabido 0.973 0.900 0.734 9.1e-219
TAIR|locus:2076446603 AT3G58580 "AT3G58580" [Arabido 0.980 0.905 0.714 1.6e-214
UNIPROTKB|E1C5L3549 CNOT6L "Uncharacterized protei 0.603 0.612 0.327 5.2e-43
ZFIN|ZDB-GENE-050522-302559 cnot6l "CCR4-NOT transcription 0.594 0.592 0.323 1.1e-42
UNIPROTKB|F1S5Q4566 CNOT6 "Uncharacterized protein 0.594 0.584 0.315 1.4e-42
UNIPROTKB|Q96LI5555 CNOT6L "CCR4-NOT transcription 0.606 0.609 0.330 1.8e-42
WB|WBGene00000376677 ccr-4 [Caenorhabditis elegans 0.608 0.500 0.319 1.5e-40
UNIPROTKB|E1BE73422 LOC100849029 "Uncharacterized 0.606 0.800 0.330 4.2e-40
SGD|S000000019837 CCR4 "Component of the CCR4-NO 0.506 0.336 0.335 4.8e-40
MGI|MGI:2443154555 Cnot6l "CCR4-NOT transcription 0.606 0.609 0.328 5.3e-40
TAIR|locus:2076426 AT3G58560 "AT3G58560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2113 (748.9 bits), Expect = 9.1e-219, P = 9.1e-219
 Identities = 407/554 (73%), Positives = 454/554 (81%)

Query:     7 YRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 66
             +R+QSD+KVA+CSVHPSE ATLQCLGC+K+K+PVAKSYHCS KCFSDAWQHHRVLH+RAA
Sbjct:    54 FRVQSDKKVAICSVHPSETATLQCLGCLKSKVPVAKSYHCSTKCFSDAWQHHRVLHERAA 113

Query:    67 SAVXXXXXXXXXLFGRFNSTGSGVINXXXXXXXXXXXXXXXXXPLYPAAVTR---SGGET 123
             SA             R NS+GSG                     +YP+A+T+   +GGET
Sbjct:   114 SAATEGNDEEE--LPRLNSSGSG-----SGVLSTSVSLTNGSSSVYPSAITQKTGAGGET 166

Query:   124 WFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFP 183
               EVGRSKTYTP ADDI HVLKFECVVV+AETK  VG   T+LTSRVIPAPSPSPRRL  
Sbjct:   167 LVEVGRSKTYTPMADDICHVLKFECVVVNAETKQNVGLSCTILTSRVIPAPSPSPRRLIS 226

Query:   184 VNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLL 243
             ++G+D+   GH+DS+GR  S GTF+VLSYNILSD YA+S+ YSYCP+WAL+W YRRQNLL
Sbjct:   227 ISGTDVT--GHLDSNGRPLSMGTFTVLSYNILSDTYASSDIYSYCPTWALAWTYRRQNLL 284

Query:   244 REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFF 303
             REI+ YRADIVCLQEVQNDHFEEFF PELDKHGYQ L+KRKTNEV+ GN +TIDGCATFF
Sbjct:   285 REIVKYRADIVCLQEVQNDHFEEFFLPELDKHGYQGLFKRKTNEVFIGNTNTIDGCATFF 344

Query:   304 RRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 363
             RRDRFSHVKKYEVEFNKAAQSLT+AI+P +QKKNALNRLVKDNVALIVVLEAKF +Q AD
Sbjct:   345 RRDRFSHVKKYEVEFNKAAQSLTEAIIPVSQKKNALNRLVKDNVALIVVLEAKFGSQAAD 404

Query:   364 TPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 423
              PGKRQLLCVANTHVNV  ELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFN+VP SA
Sbjct:   405 NPGKRQLLCVANTHVNVPHELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNTVPASA 464

Query:   424 PHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRM 483
             PH LLA+GKV+P+HPDL VDPL ILRPH+KLTHQLPLVSAYS FA++G  +  E QRRR+
Sbjct:   465 PHTLLAVGKVDPLHPDLMVDPLGILRPHSKLTHQLPLVSAYSQFAKMGGNVITEQQRRRL 524

Query:   484 DPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKDTALPSPEWSSDHI 543
             DP ++EPLFT+CTRDFIGTLDYIFYTA                 RKDTALPSPEWSSDHI
Sbjct:   525 DPASSEPLFTNCTRDFIGTLDYIFYTADTLTVESLLELLDEESLRKDTALPSPEWSSDHI 584

Query:   544 ALLAEFRCKPRARR 557
             ALLAEFRC PRARR
Sbjct:   585 ALLAEFRCMPRARR 598
GO:0008150 "biological_process" evidence=ND
GO:0016787 "hydrolase activity" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA
TAIR|locus:2076446 AT3G58580 "AT3G58580" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|E1C5L3 CNOT6L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050522-302 cnot6l "CCR4-NOT transcription complex, subunit 6-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1S5Q4 CNOT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q96LI5 CNOT6L "CCR4-NOT transcription complex subunit 6-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
WB|WBGene00000376 ccr-4 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|E1BE73 LOC100849029 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
SGD|S000000019 CCR4 "Component of the CCR4-NOT transcriptional complex" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
MGI|MGI:2443154 Cnot6l "CCR4-NOT transcription complex, subunit 6-like" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9M2F8CCR4B_ARATH3, ., 1, ., 1, 3, ., 40.76530.98020.9054nono
Q8W0Z9CCR4A_ARATH3, ., 1, ., 1, 3, ., 40.77790.97300.9003yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13.40.979
3rd Layer3.1.130.983

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XVI0485
SubName- Full=Putative uncharacterized protein; (603 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
PLN03144606 PLN03144, PLN03144, Carbon catabolite repressor pr 0.0
cd09097329 cd09097, Deadenylase_CCR4, C-terminal deadenylase 1e-169
cd10312348 cd10312, Deadenylase_CCR4b, C-terminal deadenylase 1e-57
cd10313350 cd10313, Deadenylase_CCR4a, C-terminal deadenylase 2e-56
COG5239378 COG5239, CCR4, mRNA deadenylase, exonuclease subun 2e-50
cd09096280 cd09096, Deadenylase_nocturnin, C-terminal deadeny 9e-41
cd09082348 cd09082, Deadenylase, C-terminal deadenylase domai 5e-31
cd09083252 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphata 2e-12
cd08372241 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase 3e-11
PLN03158396 PLN03158, PLN03158, methionine aminopeptidase; Pro 3e-04
>gnl|CDD|178689 PLN03144, PLN03144, Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information 
 Score = 1126 bits (2915), Expect = 0.0
 Identities = 467/555 (84%), Positives = 509/555 (91%), Gaps = 6/555 (1%)

Query: 7   YRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAA 66
           YRIQSDRKVAVCSVHPSE ATLQC+GCVKAK+PV+KSYHCSPKCFSDAW+HHRVLH+RAA
Sbjct: 54  YRIQSDRKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAA 113

Query: 67  SAVNENGNEEEELFGRFNSTGSGVINASLSGSASNSSLTNGSTPLYPAAV---TRSGGET 123
           SAV ENGNEE+ELFGRFNS+GSGV++ S SGSAS++SLTNGS PLYP+ +   T+ GGET
Sbjct: 114 SAVRENGNEEDELFGRFNSSGSGVLSTSDSGSASSASLTNGSVPLYPSGIEQKTQVGGET 173

Query: 124 WFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGHPNTLLTSRVIPAPSPSPRRLFP 183
           W EVGRSKTYTP+ADD+GHVLKFECVVVDAET LPVGHP ++LTSRVIPAPSP+PRRL  
Sbjct: 174 WIEVGRSKTYTPTADDVGHVLKFECVVVDAETGLPVGHPQSILTSRVIPAPSPTPRRLIQ 233

Query: 184 VNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLL 243
           VNG D   MGH+D DGR SS GTF+VLSYNILSD+YATS+ YSYCP WALSW YRRQNLL
Sbjct: 234 VNGLDG--MGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQNLL 291

Query: 244 REIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFF 303
           REI+GYRADI+CLQEVQ+DHFEEFFAPELDKHGYQALYK+KT EVY GN + IDGCATFF
Sbjct: 292 REIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFF 351

Query: 304 RRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGAD 363
           RRDRFS VKKYEVEFNKAAQSLT+A++PSAQKK ALNRL+KDNVALIVVLEAKF NQGAD
Sbjct: 352 RRDRFSLVKKYEVEFNKAAQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQGAD 411

Query: 364 TPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 423
             GKRQLLCVANTH++ +QELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA
Sbjct: 412 NGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSA 471

Query: 424 PHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFAR-IGVGLGMEHQRRR 482
           PH LLA GKV+P+HPDLAVDPL ILRP +KLTHQLPLVSAYSSFAR  G G G+E QRRR
Sbjct: 472 PHCLLATGKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQRRR 531

Query: 483 MDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDH 542
           MDP TNEPLFT+CTRDFIGTLDYIFYTADSL+VESLLELLDE+SLRKDTALPSPEWSSDH
Sbjct: 532 MDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDH 591

Query: 543 IALLAEFRCKPRARR 557
           IALLAEFRCKPR RR
Sbjct: 592 IALLAEFRCKPRTRR 606

Length = 606
>gnl|CDD|197331 cd09097, Deadenylase_CCR4, C-terminal deadenylase domain of CCR4 and related domains Back     alignment and domain information
>gnl|CDD|197339 cd10312, Deadenylase_CCR4b, C-terminal deadenylase domain of CCR4b, also known as CCR4-NOT transcription complex subunit 6-like Back     alignment and domain information
>gnl|CDD|197340 cd10313, Deadenylase_CCR4a, C-terminal deadenylase domain of CCR4a, also known as CCR4-NOT transcription complex subunit 6 Back     alignment and domain information
>gnl|CDD|227564 COG5239, CCR4, mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>gnl|CDD|197330 cd09096, Deadenylase_nocturnin, C-terminal deadenylase domain of nocturnin and related domains Back     alignment and domain information
>gnl|CDD|197316 cd09082, Deadenylase, C-terminal deadenylase domain of CCR4, nocturnin, and related domains Back     alignment and domain information
>gnl|CDD|197317 cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1 Back     alignment and domain information
>gnl|CDD|197306 cd08372, EEP, Exonuclease-Endonuclease-Phosphatase (EEP) domain superfamily Back     alignment and domain information
>gnl|CDD|215607 PLN03158, PLN03158, methionine aminopeptidase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
PLN03144606 Carbon catabolite repressor protein 4 homolog; Pro 100.0
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 100.0
KOG0620361 consensus Glucose-repressible alcohol dehydrogenas 100.0
KOG2338495 consensus Transcriptional effector CCR4-related pr 100.0
TIGR03395283 sphingomy sphingomyelin phosphodiesterase. Members 99.94
PRK11756268 exonuclease III; Provisional 99.92
COG3568259 ElsH Metal-dependent hydrolase [General function p 99.91
PRK05421263 hypothetical protein; Provisional 99.89
COG0708261 XthA Exonuclease III [DNA replication, recombinati 99.87
TIGR00195254 exoDNase_III exodeoxyribonuclease III. The model b 99.85
PTZ00297 1452 pantothenate kinase; Provisional 99.85
TIGR00633255 xth exodeoxyribonuclease III (xth). This family is 99.82
KOG3873 422 consensus Sphingomyelinase family protein [Signal 99.8
PRK13911250 exodeoxyribonuclease III; Provisional 99.8
smart00476276 DNaseIc deoxyribonuclease I. Deoxyribonuclease I c 99.78
KOG2756349 consensus Predicted Mg2+-dependent phosphodiestera 99.72
PF03372249 Exo_endo_phos: Endonuclease/Exonuclease/phosphatas 99.71
PLN03158396 methionine aminopeptidase; Provisional 99.69
PRK15251271 cytolethal distending toxin subunit CdtB; Provisio 99.56
COG3021309 Uncharacterized protein conserved in bacteria [Fun 99.49
COG2374798 Predicted extracellular nuclease [General function 99.42
KOG2738369 consensus Putative methionine aminopeptidase [Post 99.35
smart00128310 IPPc Inositol polyphosphate phosphatase, catalytic 99.08
KOG0566 1080 consensus Inositol-1,4,5-triphosphate 5-phosphatas 98.08
PF14529119 Exo_endo_phos_2: Endonuclease-reverse transcriptas 97.69
COG5411 460 Phosphatidylinositol 5-phosphate phosphatase [Sign 97.3
PF0175337 zf-MYND: MYND finger; InterPro: IPR002893 Zinc fin 97.0
PLN03191621 Type I inositol-1,4,5-trisphosphate 5-phosphatase 96.68
KOG1294335 consensus Apurinic/apyrimidinic endonuclease and r 96.23
COG5239378 CCR4 mRNA deadenylase, exonuclease subunit and rel 96.04
KOG1710396 consensus MYND Zn-finger and ankyrin repeat protei 93.25
PTZ00312356 inositol-1,4,5-triphosphate 5-phosphatase; Provisi 92.48
KOG1976391 consensus Inositol polyphosphate 5-phosphatase, ty 91.27
PF0443830 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc 89.04
PF0988959 DUF2116: Uncharacterized protein containing a Zn-r 83.87
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.1e-125  Score=1025.38  Aligned_cols=551  Identities=84%  Similarity=1.338  Sum_probs=507.6

Q ss_pred             eeeeeccCCcccccccccCCCcccccchhhccCCCCCcceecChHHHHHhHHHHHHHHHhhhcccccCCCchhhhccCCC
Q 008666            5 IRYRIQSDRKVAVCSVHPSEQATLQCLGCVKAKIPVAKSYHCSPKCFSDAWQHHRVLHDRAASAVNENGNEEEELFGRFN   84 (557)
Q Consensus         5 ~~~~~~~~~~~~~c~~~~~~~~~l~c~~c~~~~~~~~~~~fc~~~cf~~~w~~hk~~h~~~~~~~~~~~~~~~~~~~~~~   84 (557)
                      +|||+|+++++++|++|++++|+||||+|+|+|+++..||||||+|||++|++||.+|+.|+.+.+|+++|+++++++++
T Consensus        52 ~w~r~~~~~~~~~c~~h~~~~a~lqCp~C~k~~~~~~~s~fCsq~CFk~~w~~Hk~~h~~~~~~~~~~~~~~~~~~~~~~  131 (606)
T PLN03144         52 RWYRIQSDRKVAVCSVHPSEPATLQCVGCVKAKLPVSKSYHCSPKCFSDAWRHHRVLHERAASAVRENGNEEDELFGRFN  131 (606)
T ss_pred             EEEecCCCccceeEeecCCCcccccCccchhcCCCcCcceeeCHHHHHHHHHHHHHHHHHhhhhhcccCccccccccccC
Confidence            79999999999999999999999999999999998889999999999999999999999998888999999999999999


Q ss_pred             CCCCcccccccCCCCCCCCCcCCCCcccccccccCC---CCceEEeccceeecCCccCCCceEEEEEEEeeCCcCCCCCC
Q 008666           85 STGSGVINASLSGSASNSSLTNGSTPLYPAAVTRSG---GETWFEVGRSKTYTPSADDIGHVLKFECVVVDAETKLPVGH  161 (557)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~w~~v~~~~~y~P~~~d~g~~l~~~~~~~~~~~~~~~g~  161 (557)
                      ++|||....+++|+.++.+++|||+++||+++.+..   +++|++||++++|||+++|||+.|||||+|+++....+.|.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~vg~~~~y~p~~~d~g~~lk~~~~~~~~~~~~~~~~  211 (606)
T PLN03144        132 SSGSGVLSTSDSGSASSASLTNGSVPLYPSGIEQKTQVGGETWIEVGRSKTYTPTADDVGHVLKFECVVVDAETGLPVGH  211 (606)
T ss_pred             CCccccccccccccccccccccCcccccccccccccCCCCCceEEeCCCccccCChhhCCceEEEEEEEcccccCCCCcc
Confidence            999999988888888888899999999999988777   89999999999999999999999999999999998788898


Q ss_pred             cceeeeccccCCCCCCCCceeeeCCCCCCcCcccCCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHH
Q 008666          162 PNTLLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQN  241 (557)
Q Consensus       162 ~~~~~~~~~~p~p~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~  241 (557)
                      +.+++|.+|+|+|.|++|+|++++.  .+.++|++.+.+..+..+|||||||||++.|++.++|+|||+++++|+||+++
T Consensus       212 ~~~~~t~~v~~~p~p~~R~~~~~~~--~~~~~~~~~~~~~~~~~~frVmSYNILAd~ya~~dly~ycp~~aL~W~yRk~l  289 (606)
T PLN03144        212 PQSILTSRVIPAPSPTPRRLIQVNG--LDGMGHLDLDGRTSSAGTFTVLSYNILSDLYATSDMYSYCPPWALSWTYRRQN  289 (606)
T ss_pred             ceeecccceecCCCCCCcceEEecc--cccccccccccccCCCCCEEEEEeeeccccccCcccccCCCccccCHHHHHHH
Confidence            9999999999999999999999876  34566777777778889999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCCcccCCCCCCccceEeeeeccceeeeEeEEEEechh
Q 008666          242 LLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKA  321 (557)
Q Consensus       242 i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~~~~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~  321 (557)
                      |+++|..++|||||||||+.++|.++|.+.|.++||.++|..|++.++.++....||||||||++||++++.+.|+|+..
T Consensus       290 Il~EI~~~~aDIICLQEV~~~~~~d~~~p~L~~~GY~Gv~~~Kt~~~~~~~~~~~DGcAIFyr~drFeLv~~~~ief~~~  369 (606)
T PLN03144        290 LLREIVGYRADILCLQEVQSDHFEEFFAPELDKHGYQALYKKKTTEVYTGNTYVIDGCATFFRRDRFSLVKKYEVEFNKA  369 (606)
T ss_pred             HHHHHHhcCCCEEEEeecCHHHHHHHHHhhhhhcCceEEEeCCCCccccccccCCceeEEEEECcceEEEEeeeeeccch
Confidence            99999999999999999999999999999999999999999987766555566789999999999999999999999999


Q ss_pred             hcccccccCchhhhhhhhhhcccCcEEEEEEEeeeecCCCCCCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHH
Q 008666          322 AQSLTDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEK  401 (557)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le~k~~~~~~~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~  401 (557)
                      ++++++...++.++.++++|++++|||++++|+.+.........+.++.|+|+||||+|+|.+.++|+.|+..|++.|++
T Consensus       370 ~lslt~~~~~s~~~~~~l~Rl~kdNVAliv~Le~k~~~~~~~~~~~~~~l~VaNTHL~~~p~~~dvRl~Q~~~Ll~~l~~  449 (606)
T PLN03144        370 AQSLTEALIPSAQKKAALNRLLKDNVALIVVLEAKFGNQGADNGGKRQLLCVANTHIHANQELKDVKLWQVHTLLKGLEK  449 (606)
T ss_pred             hhccCccccccccchhhhhhhccCcEEEEEEEEEecccccccCCCCccEEEEEEeeeccCCccchhHHHHHHHHHHHHHH
Confidence            98888777666667889999999999999999997543222222345689999999999999999999999999999999


Q ss_pred             HhhcCCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCCCCCCCcccCCCCcchhhhhhh-hccCCcccccc
Q 008666          402 IAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFAR-IGVGLGMEHQR  480 (557)
Q Consensus       402 ~~~~~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~~~~~~~~~~l~~~~~l~Say~~~~~-~~~~~g~~~~~  480 (557)
                      +....++|+|||||||+.|+|++|++|++|.++.+|+||..++++.+.+..++.|+|+|.|||..+.+ .|.+.+++.+.
T Consensus       450 ~~~~~~~PvIlcGDFNS~P~S~vy~lLt~G~v~~~h~d~~~~~~~~~~~~~~l~H~~~L~SAY~~~~~~~g~~~~~~~~~  529 (606)
T PLN03144        450 IAASADIPMLVCGDFNSVPGSAPHCLLATGKVDPLHPDLAVDPLGILRPASKLTHQLPLVSAYSSFARMPGSGSGLEQQR  529 (606)
T ss_pred             HhhcCCCceEEeccCCCCCCChhhhhhhcCCcCCCchhhccCccccccccccccCCCcccchhhhhccccccccchhhhh
Confidence            87666899999999999999999999999999999999999999888767899999999999998754 33445678889


Q ss_pred             ccCCCCCCCCccccccCCcccceeEEEeeCCCcceeeecccCChhhhccCCCCCCCCCCCCcceeeEEEEEeccCCC
Q 008666          481 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLRKDTALPSPEWSSDHIALLAEFRCKPRARR  557 (557)
Q Consensus       481 ~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~~~~~~~~~~lP~~~~pSDH~pl~aef~~~~~~~~  557 (557)
                      .++|+.+++|.||||+++|.++||||||+.+.|.+.+++++++++++.+..||||..+||||+||+|+|+|+++.||
T Consensus       530 ~r~~~~~geP~fTNyt~~F~gtlDYIfys~~~L~v~~vL~lp~e~~l~~~~gLPn~~~PSDHI~L~AeF~~~~~~~~  606 (606)
T PLN03144        530 RRMDPATNEPLFTNCTRDFIGTLDYIFYTADSLTVESLLELLDEESLRKDTALPSPEWSSDHIALLAEFRCKPRTRR  606 (606)
T ss_pred             hccccccCCCCceeecCCcceeEEEEEEcCCCceEEeecCCCCHHHhcccCCCCCCCCCCccccEeEEEEeccCCCC
Confidence            99999999999999999999999999999989999999999999999999999999999999999999999999876

>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription] Back     alignment and domain information
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription] Back     alignment and domain information
>TIGR03395 sphingomy sphingomyelin phosphodiesterase Back     alignment and domain information
>PRK11756 exonuclease III; Provisional Back     alignment and domain information
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only] Back     alignment and domain information
>PRK05421 hypothetical protein; Provisional Back     alignment and domain information
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair] Back     alignment and domain information
>TIGR00195 exoDNase_III exodeoxyribonuclease III Back     alignment and domain information
>PTZ00297 pantothenate kinase; Provisional Back     alignment and domain information
>TIGR00633 xth exodeoxyribonuclease III (xth) Back     alignment and domain information
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms] Back     alignment and domain information
>PRK13911 exodeoxyribonuclease III; Provisional Back     alignment and domain information
>smart00476 DNaseIc deoxyribonuclease I Back     alignment and domain information
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms] Back     alignment and domain information
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling [] Back     alignment and domain information
>PLN03158 methionine aminopeptidase; Provisional Back     alignment and domain information
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional Back     alignment and domain information
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>COG2374 Predicted extracellular nuclease [General function prediction only] Back     alignment and domain information
>KOG2738 consensus Putative methionine aminopeptidase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues Back     alignment and domain information
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B Back     alignment and domain information
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms] Back     alignment and domain information
>PF01753 zf-MYND: MYND finger; InterPro: IPR002893 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional Back     alignment and domain information
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair] Back     alignment and domain information
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification] Back     alignment and domain information
>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional Back     alignment and domain information
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism] Back     alignment and domain information
>PF04438 zf-HIT: HIT zinc finger; InterPro: IPR007529 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3ngq_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 2e-43
3ngn_A398 Crystal Structure Of The Human Cnot6l Nuclease Doma 2e-43
4b8c_D727 Nuclease Module Of The Yeast Ccr4-Not Complex Lengt 4e-42
>pdb|3NGQ|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain Length = 398 Back     alignment and structure 
Iteration: 1

 Score =  174 bits (440), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/370 (31%), Positives = 176/370 (47%), Gaps = 37/370 (10%)
Query: 200 RISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEV 259
           +I  + +F+V+ YN+L D YAT + Y YCPSWAL+W YR++ ++ EI+   ADI+ LQEV
Sbjct: 25  QILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEV 84
Query: 260 QNDHFEEFFAPELDKHGYQALY--KRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVE 317
           + + +   F P L + GY   +  K +   +       +DGCA FF+ ++F+ V+K+ VE
Sbjct: 85  ETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVE 144
Query: 318 FNKAAQSLTDAILPSAQKKNALNR-LVKDNVALIVVLEAKFSNQGADT----PGKRQLLC 372
           FN+ A + +D        +  LNR + KDN+ + VVLE      GA         +QLL 
Sbjct: 145 FNQVAMANSDG------SEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLI 198
Query: 373 VANTHVNVHQELKDVKLWQVHTLLKGLEKIAASA------------DIPMLVCGDFNSVP 420
           VAN H++   E  DVKL Q    +  ++ I   A             IP+++C D NS+P
Sbjct: 199 VANAHMHWDPEYSDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLP 258
Query: 421 GSAPHALLAMGKVEPVHPDLAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQR 480
            S     L+ G V   H D        LR +  L +        SS  RI  G  ++   
Sbjct: 259 DSGVVEYLSNGGVADNHKDFKE-----LRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY 313
Query: 481 RRMDPTTNEPLFTHCTRDFIGTLDYIFYTAXXXXXXXXXXXXXXXXXRKD--TALPSPEW 538
                  N   +T+ T DF G +DYIFY+                   ++  T  P P  
Sbjct: 314 E-----NNLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHI 368
Query: 539 SSDHIALLAE 548
            SDH +LL +
Sbjct: 369 PSDHFSLLTQ 378
>pdb|3NGN|A Chain A, Crystal Structure Of The Human Cnot6l Nuclease Domain In Complex With Amp Length = 398 Back     alignment and structure
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 4e-91
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 1e-39
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 9e-33
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 1e-22
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 4e-18
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 5e-18
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 2e-17
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 2e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Length = 398 Back     alignment and structure
 Score =  284 bits (727), Expect = 4e-91
 Identities = 122/413 (29%), Positives = 188/413 (45%), Gaps = 50/413 (12%)

Query: 165 LLTSRVIPAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSES 224
           +L +  +      PR               +    +I  + +F+V+ YN+L D YAT + 
Sbjct: 1   MLDNLAVHPEQLPPRPWIT-----------LKERDQILPSASFTVMCYNVLCDKYATRQL 49

Query: 225 YSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKRK 284
           Y YCPSWAL+W YR++ ++ EI+   ADI+ LQEV+ + +   F P L + GY   +  K
Sbjct: 50  YGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPK 109

Query: 285 TNE--VYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRL 342
           +    +       +DGCA FF+ ++F+ V+K+ VEFN+ A +       S   +  LNR+
Sbjct: 110 SRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA------NSDGSEAMLNRV 163

Query: 343 V-KDNVALIVVLEAKFSNQGADT----PGKRQLLCVANTHVNVHQELKDVKLWQVHTLLK 397
           + KDN+ + VVLE      GA         +QLL VAN H++   E  DVKL Q    + 
Sbjct: 164 MTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVS 223

Query: 398 GLEKIAASA------------DIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPL 445
            ++ I   A             IP+++C D NS+P S     L+ G V   H D      
Sbjct: 224 EVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELR- 282

Query: 446 TILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQ-RRRMDPTTNEPLFTHCTRDFIGTLD 504
                     +   L++   +         + H  + +     N   +T+ T DF G +D
Sbjct: 283 ----------YNECLMNFSCNGKNGSSEGRITHGFQLKSAYENNLMPYTNYTFDFKGVID 332

Query: 505 YIFYTADSLSVESLLELLDEDSL--RKDTALPSPEWSSDHIALLAEFRCKPRA 555
           YIFY+   ++VE +L  LD   L     T  P P   SDH +LL +    P  
Sbjct: 333 YIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHPPL 385
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Length = 298 Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Length = 267 Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Length = 257 Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Length = 301 Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Length = 306 Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Length = 317 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Length = 266 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
3ngq_A398 CCR4-NOT transcription complex subunit 6-like; alp 100.0
4b8c_D727 Glucose-repressible alcohol dehydrogenase transcr 100.0
3l1w_A257 Uncharacterized protein; APC29019.2, conserved pro 99.98
3g6s_A267 Putative endonuclease/exonuclease/phosphatase fami 99.97
3mpr_A298 Putative endonuclease/exonuclease/phosphatase FAM 99.97
4f1h_A250 Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA com 99.97
4gz1_A256 Tyrosyl-DNA phosphodiesterase 2; protein-DNA compl 99.97
4fva_A256 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.96
4gew_A362 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosy 99.96
1zwx_A301 SMCL, sphingomyelinase-C; dnase1-like fold, beta-h 99.95
3teb_A266 Endonuclease/exonuclease/phosphatase; PSI-biology, 99.95
3i41_A317 Beta-hemolysin; beta toxin, sphingomyelinase, toxi 99.94
2ddr_A306 Sphingomyelin phosphodiesterase; DNAse I like fold 99.93
1ako_A268 Exonuclease III; AP-endonuclease, DNA repair; 1.70 99.91
2jc4_A256 Exodeoxyribonuclease III; hydrolase, repair phosph 99.91
2jc5_A259 Exodeoxyribonuclease; hydrolase, repair phosphodie 99.9
1vyb_A238 ORF2 contains A reverse transcriptase domain; endo 99.89
2o3h_A285 DNA-(apurinic or apyrimidinic site) lyase; APE, en 99.88
2voa_A257 AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP 99.87
3g91_A265 MTH0212, exodeoxyribonuclease; double-strand speci 99.86
1hd7_A318 DNA-(apurinic or apyrimidinic site) lyase; DNA rep 99.86
2j63_A467 AP-endonuclease; base excision repair, lyase; 2.48 99.86
2a40_B260 Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse 99.85
1wdu_A245 TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA 99.84
2imq_X282 Salivary nitrophorin; ferrous heme, beta-sandwich, 99.75
2ei9_A240 Non-LTR retrotransposon R1BMKS ORF2 protein; four 99.73
1sr4_B261 CDT B, cytolethal distending toxin protein B; bact 99.68
2f1n_A262 CDT B, cytolethal distending toxin subunit B; E.co 99.68
1i9z_A347 Synaptojanin, phosphatidylinositol phosphate phosp 99.57
2xsw_A357 72 kDa inositol polyphosphate 5-phosphatase; inosi 99.36
3mtc_A313 Type II inositol-1,4,5-trisphosphate 5-phosphatas; 99.07
4a9c_A316 Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; 98.98
2dj8_A60 Protein CBFA2T1; zinc finger MYND domain, protein 96.19
2d8q_A70 BLU protein, zinc finger MYND domain containing pr 95.93
2jw6_A52 Deformed epidermal autoregulatory factor 1 homolo; 95.9
2odd_A64 Protein CBFA2T1; MYND zinc finger, cross-braced to 95.8
2od1_A60 Protein CBFA2T1; zinc finger, cross-braced topolog 95.71
3qwp_A429 SET and MYND domain-containing protein 3; SMYD3,SE 91.56
3qww_A433 SET and MYND domain-containing protein 2; methyltr 91.12
3n71_A490 Histone lysine methyltransferase SMYD1; heart deve 89.85
2yqq_A56 Zinc finger HIT domain-containing protein 3; struc 86.71
1x4s_A59 Protein FON, zinc finger HIT domain containing pro 82.6
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A Back     alignment and structure
Probab=100.00  E-value=7.9e-66  Score=544.14  Aligned_cols=345  Identities=36%  Similarity=0.626  Sum_probs=282.0

Q ss_pred             CCCCCCCCceeeeCCCCCCcCcccCCCCCCCCCCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCC
Q 008666          172 PAPSPSPRRLFPVNGSDMNMMGHIDSDGRISSTGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRA  251 (557)
Q Consensus       172 p~p~p~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~a  251 (557)
                      +.|+|+.|.||.+...           .+..+...|||||||||++.|++.+.|+|||++.++|.+|++.|+++|..++|
T Consensus         8 ~~~~p~~R~wi~~~~~-----------~~~~~~~~~~V~syNIl~d~~~~~~~~~~~p~~~~~W~~R~~~i~~~i~~~~p   76 (398)
T 3ngq_A            8 HPEQLPPRPWITLKER-----------DQILPSASFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDA   76 (398)
T ss_dssp             ----CCCCCEEECSCC-----------C--CCCEEEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCCcceECCCC-----------CCCCCCCCEEEEEEccCcCcCCccccccCCChhhcCHHHHHHHHHHHHHhcCC
Confidence            5667789999998651           12224568999999999999999999999999999999999999999999999


Q ss_pred             cEEEEeccchhhHHHHhHHHHhhCCCeEEEEecCCcccC--CCCCCccceEeeeeccceeeeEeEEEEechhhccccccc
Q 008666          252 DIVCLQEVQNDHFEEFFAPELDKHGYQALYKRKTNEVYN--GNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAI  329 (557)
Q Consensus       252 DIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~k~~~~~~--~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~  329 (557)
                      ||||||||+..++.+++.+.|..+||.++|..|++...+  .++...+|||||||+++|++++...++|++....     
T Consensus        77 DIi~lQEv~~~q~~~~l~~~L~~~gY~~v~~~k~r~~~~~~~~~~~~eG~AIfyr~~~f~ll~~~~i~ls~~~~~-----  151 (398)
T 3ngq_A           77 DIISLQEVETEQYFTLFLPALKERGYDGFFSPKSRAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMA-----  151 (398)
T ss_dssp             SEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESCTTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHH-----
T ss_pred             CEEEEecccHHHHHHHHHHHHHhCCceEEEecCCCccccccccccCcceeEEEEECCcceEEeeeEEecCCCccc-----
Confidence            999999999988888889999999999999877543111  1123568999999999999999999999875432     


Q ss_pred             Cchhhhhhhhhhcc-cCcEEEEEEEeeeecCCCC----CCCCCcceEEEEEeccccCcCCcccHHHHHHHHHHHHHHHhh
Q 008666          330 LPSAQKKNALNRLV-KDNVALIVVLEAKFSNQGA----DTPGKRQLLCVANTHVNVHQELKDVKLWQVHTLLKGLEKIAA  404 (557)
Q Consensus       330 ~~~~~~~~~~~R~~-~~~val~~~Le~k~~~~~~----~~~~~~~~l~V~NTHL~~~p~~~~vR~~Q~~~L~~~l~~~~~  404 (557)
                       ++..++.+++|++ ++|||++++|+.+......    ....+++.|+|+||||+|+|...++|+.|+..|++.|+++..
T Consensus       152 -~s~~~~~~~~Ri~t~~nval~~~L~~~~~~~~~~~~~~~~~~~~~l~V~nTHL~~~p~~~~vRl~Q~~~Ll~~l~~~~~  230 (398)
T 3ngq_A          152 -NSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIHAADKQLLIVANAHMHWDPEYSDVKLIQTMMFVSEVKNILE  230 (398)
T ss_dssp             -TCTTCHHHHHTTTTCCCEEEEEEEEECGGGC-----------CCEEEEEEEECCCCTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             -ccccchhhhcceeeccceeEEEEEEEcccccccccccccCCCCcEEEEEEeCcCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence             2334678899998 5999999999986421000    001246789999999999999999999999999999998853


Q ss_pred             c------------CCCCEEEEccCCCCCCChhhhhhhcCCCCCCCCCCCCCCCCCC----CC-------CCCcccCCCCc
Q 008666          405 S------------ADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPDLAVDPLTIL----RP-------HTKLTHQLPLV  461 (557)
Q Consensus       405 ~------------~~~pvIl~GDFNs~p~s~~~~lL~~g~v~~~h~d~~~~~~~~~----~~-------~~~l~~~~~l~  461 (557)
                      +            .+.|+|||||||+.|+|++|++|++|.++.+|+||....|+..    .+       ...+.|+|+|.
T Consensus       231 ~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s~vy~~L~~G~v~~~h~d~~~~~y~~~~~~~~~~~~~~~~~~~~~h~~~L~  310 (398)
T 3ngq_A          231 KASSRPGSPTADPNSIPLVLCADLNSLPDSGVVEYLSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLK  310 (398)
T ss_dssp             C-------------CCCEEEEEECSCCTTSHHHHHHHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEE
T ss_pred             HhhcccccccccCCCCceEEEeeCCCCCCCHHHHHHhcCCCCCCChhhhhcccccccccccccccccccccccccCcccc
Confidence            2            3579999999999999999999999999999999986554431    11       13588999999


Q ss_pred             chhhhhhhhccCCccccccccCCCCCCCCccccccCCcccceeEEEeeCCCcceeeecccCChhhhc--cCCCCCCCCCC
Q 008666          462 SAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDFIGTLDYIFYTADSLSVESLLELLDEDSLR--KDTALPSPEWS  539 (557)
Q Consensus       462 Say~~~~~~~~~~g~~~~~~~~d~~~~~p~fTn~t~~f~~~LDyIf~s~~~l~v~~~~~~~~~~~~~--~~~~lP~~~~p  539 (557)
                      |||..                     ++|.||||+.+|.++||||||+.+.|.|.++++.++++++.  +..||||..+|
T Consensus       311 SAy~~---------------------~~~~fTnyt~~F~g~lDYI~~s~~~l~v~~vl~~~~~~~l~~~~~~glP~~~~P  369 (398)
T 3ngq_A          311 SAYEN---------------------NLMPYTNYTFDFKGVIDYIFYSKTHMNVEGVLGPLDPQWLVENNITGCPHPHIP  369 (398)
T ss_dssp             ETTTT---------------------TSSSCSEECSSCEECCEEEEEETTTEEEEEEECCCCHHHHHHTTCCSSCBTTBC
T ss_pred             ccccC---------------------CCCCceeccCCcCCceeEEEEeCCceEEEeecCCCCHHHhccccccCCCCCCCC
Confidence            99963                     37899999999999999999999889999999888888875  68999999999


Q ss_pred             CCcceeeEEEEEecc
Q 008666          540 SDHIALLAEFRCKPR  554 (557)
Q Consensus       540 SDH~pl~aef~~~~~  554 (557)
                      |||+||+|||+|+++
T Consensus       370 SDHi~l~a~f~~~~~  384 (398)
T 3ngq_A          370 SDHFSLLTQLELHPP  384 (398)
T ss_dssp             SSBCCEEEEEEECCC
T ss_pred             CcchheeEEEEEccC
Confidence            999999999999875
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} Back     alignment and structure
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} Back     alignment and structure
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron} Back     alignment and structure
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B* Back     alignment and structure
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A* Back     alignment and structure
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans} Back     alignment and structure
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A Back     alignment and structure
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3 Back     alignment and structure
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b} Back     alignment and structure
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A Back     alignment and structure
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X Back     alignment and structure
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} Back     alignment and structure
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} Back     alignment and structure
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Back     alignment and structure
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A Back     alignment and structure
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} Back     alignment and structure
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A Back     alignment and structure
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A Back     alignment and structure
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} Back     alignment and structure
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D* Back     alignment and structure
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1 Back     alignment and structure
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X* Back     alignment and structure
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Back     alignment and structure
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Back     alignment and structure
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Back     alignment and structure
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A* Back     alignment and structure
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens} Back     alignment and structure
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A Back     alignment and structure
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B* Back     alignment and structure
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10; zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A Back     alignment and structure
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1 Back     alignment and structure
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal binding protein; NMR {Homo sapiens} Back     alignment and structure
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* Back     alignment and structure
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* Back     alignment and structure
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Back     alignment and structure
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 557
d2ddra1299 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesteras 5e-16
d1zwxa1293 d.151.1.3 (A:41-333) Sphingomyelin phosphodiestera 6e-15
d1sr4b_261 d.151.1.1 (B:) Cytolethal distending toxin subunit 3e-04
d2a40b1260 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos 7e-04
d2f1na1250 d.151.1.1 (A:1-250) Cytolethal distending toxin su 0.001
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Length = 299 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Bacillus cereus [TaxId: 1396]

 Score = 76.6 bits (186), Expect = 5e-16
 Identities = 43/356 (12%), Positives = 86/356 (24%), Gaps = 71/356 (19%)

Query: 206 TFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFE 265
           T  V+++N+         ++            R   +         D+V L EV ++   
Sbjct: 3   TLKVMTHNVYMLSTNLYPNWG--------QTERADLIGAADYIKNQDVVILNEVFDNSAS 54

Query: 266 EFFAPELDKHGYQALYKRKTNEVYNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSL 325
           +     L K                G     +   T       +         +K   + 
Sbjct: 55  DRLLGNLKKEYPNQTA-------VLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAE 107

Query: 326 TDAILPSAQKKNALNRLVKDNVALIVVLEAKFSNQGADTPGKRQLLCVANTHVNVH---- 381
               + +            DN++    +  K            + + V  TH+       
Sbjct: 108 KIQYVFAKGCG-------PDNLSNKGFVYTKIKKND-------RFVHVIGTHLQAEDSMC 153

Query: 382 --QELKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALLAMGKVEPVHPD 439
                  V+  Q+  +   ++      +  +L+ GD N    +A +   +          
Sbjct: 154 GKTSPASVRTNQLKEIQDFIKNKNIPNNEYVLIGGDMNVNKINAENNNDSEYA------- 206

Query: 440 LAVDPLTILRPHTKLTHQLPLVSAYSSFARIGVGLGMEHQRRRMDPTTNEPLFTHCTRDF 499
                L    P                                 D TTN     +     
Sbjct: 207 SMFKTLNASVPS------------------------YTGHTATWDATTNSIAKYNFPDSP 242

Query: 500 IGTLDYIFYTADSLSVESLLELLDEDSLRKDTAL-----PSPEWSSDHIALLAEFR 550
              LDYI  + D  +   +   + +    + T        +    SDH  + A   
Sbjct: 243 AEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATIS 298
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Length = 293 Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Length = 261 Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Length = 260 Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Length = 250 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d1zwxa1293 Sphingomyelin phosphodiesterase C {Listeria ivanov 99.95
d2ddra1299 Sphingomyelin phosphodiesterase C {Bacillus cereus 99.94
d2a40b1260 Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913 99.85
d1vyba_236 Endonuclease domain of LINE-1 reverse transcriptas 99.84
d1sr4b_261 Cytolethal distending toxin subunit B {Haemophilus 99.79
d2f1na1250 Cytolethal distending toxin subunit B {Escherichia 99.73
d2imqx1280 Salivary nitrophorin {Bedbug (Cimex lectularius) [ 99.71
d1wdua_228 Endonuclease domain of TRAS1 retrotransposon (ORF2 99.71
d1hd7a_275 DNA repair endonuclease Hap1 {Human (Homo sapiens) 99.69
d1akoa_268 DNA-repair enzyme exonuclease III {Escherichia col 99.61
d1i9za_345 Synaptojanin, IPP5C domain {Fission yeast (Schizos 99.46
d2dana147 Zinc finger MYND domain-containing protein 10, ZMY 97.54
d2dj8a147 Zinc finger MYND domain-containing protein 2, MTG8 97.44
d2jw6a138 Zinc finger MYND domain-containing protein 2, MTG8 97.16
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C {Listeria ivanovii [TaxId: 1638]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: Sphingomyelin phosphodiesterase-like
domain: Sphingomyelin phosphodiesterase C
species: Listeria ivanovii [TaxId: 1638]

Probab=99.95  E-value=1.2e-27  Score=236.50  Aligned_cols=188  Identities=16%  Similarity=0.149  Sum_probs=121.8

Q ss_pred             CCcEEEEEeccCCCcCCCCCCCCCCCCcccChHHHHHHHHHHHhcCCCcEEEEeccchhhHHHHhHHHHhhCCCeEEEEe
Q 008666          204 TGTFSVLSYNILSDVYATSESYSYCPSWALSWAYRRQNLLREIIGYRADIVCLQEVQNDHFEEFFAPELDKHGYQALYKR  283 (557)
Q Consensus       204 ~~~~rV~SyNIl~~~ya~~~~y~y~p~~~l~w~~R~~~i~~eI~~~~aDIIcLQEV~~~~~~~~l~~~L~~~gY~~~~~~  283 (557)
                      ++.||||||||+...   ...+     ....+..|.++|+++|..++|||||||||......+.+...+.. .|......
T Consensus         2 ~~~lki~s~Nv~~~~---~~~~-----~~~~~~~r~~~i~~~i~~~~~DVi~LQEv~~~~~~~~l~~~~~~-~~~~~~~~   72 (293)
T d1zwxa1           2 PGNFKITSHNVYLFS---RNIY-----PNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLRE-MYPHQTPV   72 (293)
T ss_dssp             CCSCEEEEEEEEECC---TTTS-----TTSCHHHHHHHHHTSGGGSSCSEEEEEEECSHHHHHHHHHHTTT-TCCEECCC
T ss_pred             CCCCEEEEEecCcCc---cccC-----CCcCHHHHHHHHHHHHHhcCCCEEEEEccCCcchHHHHHHHHhh-hccceehh
Confidence            467999999997421   1112     12346789999999999999999999999887766666666643 33322221


Q ss_pred             cCCcc---------cCCCCCCccceEeeeeccceeeeEeEEEEechhhcccccccCchhhhhhhhhhcccCcEEEEEEEe
Q 008666          284 KTNEV---------YNGNPHTIDGCATFFRRDRFSHVKKYEVEFNKAAQSLTDAILPSAQKKNALNRLVKDNVALIVVLE  354 (557)
Q Consensus       284 k~~~~---------~~~~~~~~~G~Aif~r~srf~l~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~val~~~Le  354 (557)
                      .....         .........|++|+   +|+++.....+.+.....               ..+.. ...++.+.+.
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~g~~il---sr~pi~~~~~~~~~~~~~---------------~~~~~-~~~~~~~~~~  133 (293)
T d1zwxa1          73 IGRSKHGWDKTEGNYSNFALEDGGVAVV---SQWPIVEKSQHIFQRGGG---------------ADRLS-NKGFAYVKIM  133 (293)
T ss_dssp             TTSCSTTCSEEEC-----CCBCCCCEEE---ESSCEEEEEEEECSCCCG---------------GGGGB-CCEEEEEEEE
T ss_pred             cccccccccccccccccccccccceEEE---eccCcccceeeeeecccc---------------ccccc-cceEEEEEEe
Confidence            11100         00112234689999   788888776654432110               00111 1112333333


Q ss_pred             eeecCCCCCCCCCcceEEEEEeccccCcC------CcccHHHHHHHHHHHHHHHhhcCCCCEEEEccCCCCCCChhhhhh
Q 008666          355 AKFSNQGADTPGKRQLLCVANTHVNVHQE------LKDVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGSAPHALL  428 (557)
Q Consensus       355 ~k~~~~~~~~~~~~~~l~V~NTHL~~~p~------~~~vR~~Q~~~L~~~l~~~~~~~~~pvIl~GDFNs~p~s~~~~lL  428 (557)
                      .           .+..++|+||||.+...      ....|..|++.+++.+.+.....+.|+|||||||+.|.+..++.|
T Consensus       134 ~-----------~~~~~~v~~~Hl~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~vil~GDfN~~~~~~~~~~~  202 (293)
T d1zwxa1         134 K-----------NGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIFIGGDLNVNYGTDEYHDM  202 (293)
T ss_dssp             E-----------TTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCCTTSEEEEEEECCCCTTSHHHHHH
T ss_pred             c-----------CCceEEEEEeeeeccCCccchhHHHHHHHHHHHHhhhhhhhhccCCCCcEEEEeecCCCCCchHHHHH
Confidence            3           36789999999976532      234688899988888887755567899999999999999998877


Q ss_pred             hc
Q 008666          429 AM  430 (557)
Q Consensus       429 ~~  430 (557)
                      ..
T Consensus       203 ~~  204 (293)
T d1zwxa1         203 LK  204 (293)
T ss_dssp             HH
T ss_pred             Hh
Confidence            65
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse transcriptase homolog {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]} Back     information, alignment and structure
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex lectularius) [TaxId: 79782]} Back     information, alignment and structure
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]} Back     information, alignment and structure
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure