Citrus Sinensis ID: 008667

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLCEGEECSSERTYE
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccHHHHHcccccHHHccHHHHHHHHHHcccccccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHccccccEEEEcccccEEEEEEEEccccEEEEEEcHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHHHHHccccccccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHEcccHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccccccccccHHHHHHHHHHHHHHHHcccccEEEEEcccccEEEEEEccccccEEEEEEHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHccccccEEEEccccc
MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMdrtyipsthktpvhelglnlwrdnIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMdlgpsvyqedfekpFLEVSAEFYKVEsqkfieccdcgEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIanhmprlvhmdNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETgkqlvtdperlkdPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFinlnprspefiSLFVDDKLrkglkgvseEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLlsgktvsddAERSLIVKLKtecgyqftsklegmftdmktsqdTMHEFYashpelgdsrTLVVQVLTtgswptqpsvtcnlpAEMSALCEKFRSYYLgthtgrrlswqtnmgsadikatfgkgqkhelNVSTYQMCVLMLFNNAdrlsyqgnragnrdscfrlekvpaisglcegeecssertye
MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTllelvhrertgevinrglMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVthyldakseakiTNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRetgkqlvtdperlkdpVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKglkgvseedveTILDKVMMLFRYLQEKDVFEKYYKQHLAKrllsgktvsddAERSLIVKlktecgyqftSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGswptqpsvtCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVpaisglcegeecssertye
MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAIsglcegeecsseRTYE
*****FGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVT****LKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDM******MHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLC************
MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGL****EEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEF******LGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISG**************
MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLC************
MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLCEGEECSSERTY*
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MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYxxxxxxxxxxxxxxxxxxxxxKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAISGLCEGEECSSERTYE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q9ZVH4 732 Cullin-3A OS=Arabidopsis yes no 0.937 0.713 0.844 0.0
Q9C9L0 732 Cullin-3B OS=Arabidopsis no no 0.937 0.713 0.842 0.0
Q54NZ5 769 Cullin-3 OS=Dictyostelium yes no 0.935 0.677 0.554 1e-172
Q13618 768 Cullin-3 OS=Homo sapiens yes no 0.935 0.678 0.521 1e-159
B5DF89 768 Cullin-3 OS=Rattus norveg yes no 0.935 0.678 0.519 1e-158
Q9JLV5 768 Cullin-3 OS=Mus musculus yes no 0.935 0.678 0.518 1e-158
Q6DE95 768 Cullin-3-A OS=Xenopus lae N/A no 0.937 0.679 0.515 1e-157
Q6GPF3 768 Cullin-3-B OS=Xenopus lae N/A no 0.937 0.679 0.513 1e-157
A4IHP4 768 Cullin-3 OS=Xenopus tropi yes no 0.937 0.679 0.513 1e-156
Q17391 777 Cullin-3 OS=Caenorhabditi yes no 0.929 0.666 0.412 1e-113
>sp|Q9ZVH4|CUL3A_ARATH Cullin-3A OS=Arabidopsis thaliana GN=CUL3A PE=1 SV=1 Back     alignment and function desciption
 Score =  938 bits (2424), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 441/522 (84%), Positives = 483/522 (92%)

Query: 1   MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILM 60
           MVLHKFGEKLY+G ++TMT HLKE SK IEAAQGGSFLEELN+KWN+HNKAL+MIRDILM
Sbjct: 59  MVLHKFGEKLYTGFIATMTSHLKEKSKLIEAAQGGSFLEELNKKWNEHNKALEMIRDILM 118

Query: 61  YMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMR 120
           YMDRTYI ST KT VH +GLNLWRDN+V   KI TRLLNTLL+LV +ER GEVI+RGLMR
Sbjct: 119 YMDRTYIESTKKTHVHPMGLNLWRDNVVHFTKIHTRLLNTLLDLVQKERIGEVIDRGLMR 178

Query: 121 NIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMER 180
           N+IKM MDLG SVYQEDFEKPFL+ S+EFYKVESQ+FIE CDCG+YLKK+E+RL EE+ER
Sbjct: 179 NVIKMFMDLGESVYQEDFEKPFLDASSEFYKVESQEFIESCDCGDYLKKSEKRLTEEIER 238

Query: 181 VTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVP 240
           V HYLDAKSE KIT+VVEKEMIANHM RLVHM+NSGLVNMLL+DKYEDLGRMYNLFRRV 
Sbjct: 239 VAHYLDAKSEEKITSVVEKEMIANHMQRLVHMENSGLVNMLLNDKYEDLGRMYNLFRRVT 298

Query: 241 SGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQ 300
           +GL+T+R+VMTSHLRE GKQLVTDPE+ KDPVEFVQRLLDE+DKYD II++AF NDKTFQ
Sbjct: 299 NGLVTVRDVMTSHLREMGKQLVTDPEKSKDPVEFVQRLLDERDKYDKIINTAFGNDKTFQ 358

Query: 301 NALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDV 360
           NALNSSFEYFINLN RSPEFISLFVDDKLRKGLKG+++ DVE ILDKVMMLFRYLQEKDV
Sbjct: 359 NALNSSFEYFINLNARSPEFISLFVDDKLRKGLKGITDVDVEVILDKVMMLFRYLQEKDV 418

Query: 361 FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEF 420
           FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTS+DTM  F
Sbjct: 419 FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSEDTMRGF 478

Query: 421 YASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQ 480
           Y SHPEL +  TL+VQVLTTGSWPTQP+V CNLPAE+S LCEKFRSYYLGTHTGRRLSWQ
Sbjct: 479 YGSHPELSEGPTLIVQVLTTGSWPTQPAVPCNLPAEVSVLCEKFRSYYLGTHTGRRLSWQ 538

Query: 481 TNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 522
           TNMG+ADIKA FGKGQKHELNVST+QMCVLMLFNN+DRLSY+
Sbjct: 539 TNMGTADIKAIFGKGQKHELNVSTFQMCVLMLFNNSDRLSYK 580
Component of the cullin-RING ubiquitin ligases (CRL), or CUL3-RBX1-BTB protein E3 ligase complexes which mediate the ubiquitination and subsequent proteasomal degradation of target proteins. The functional specificity of the CRL complex depends on the BTB domain-containing protein as the susbstrate recognition component. Involved in embryo pattern formation and endosperm development. Required for the normal division and organization of the root stem cells and columella root cap cells. Regulates primary root growth by an unknown pathway, but in an ethylene-dependent manner. Functions in distal root patterning, by an ethylene-independent mechanism. Functionally redundant with CUL3B.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9C9L0|CUL3B_ARATH Cullin-3B OS=Arabidopsis thaliana GN=CUL3B PE=1 SV=1 Back     alignment and function description
>sp|Q54NZ5|CUL3_DICDI Cullin-3 OS=Dictyostelium discoideum GN=culC PE=3 SV=1 Back     alignment and function description
>sp|Q13618|CUL3_HUMAN Cullin-3 OS=Homo sapiens GN=CUL3 PE=1 SV=2 Back     alignment and function description
>sp|B5DF89|CUL3_RAT Cullin-3 OS=Rattus norvegicus GN=Cul3 PE=1 SV=2 Back     alignment and function description
>sp|Q9JLV5|CUL3_MOUSE Cullin-3 OS=Mus musculus GN=Cul3 PE=1 SV=1 Back     alignment and function description
>sp|Q6DE95|CUL3A_XENLA Cullin-3-A OS=Xenopus laevis GN=cul3a PE=1 SV=1 Back     alignment and function description
>sp|Q6GPF3|CUL3B_XENLA Cullin-3-B OS=Xenopus laevis GN=cul3b PE=1 SV=1 Back     alignment and function description
>sp|A4IHP4|CUL3_XENTR Cullin-3 OS=Xenopus tropicalis GN=cul3 PE=2 SV=1 Back     alignment and function description
>sp|Q17391|CUL3_CAEEL Cullin-3 OS=Caenorhabditis elegans GN=cul-3 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
255562822 674 cullin, putative [Ricinus communis] gi|2 0.937 0.774 0.944 0.0
224111260 733 predicted protein [Populus trichocarpa] 0.937 0.712 0.927 0.0
224099735 732 predicted protein [Populus trichocarpa] 0.937 0.713 0.921 0.0
356567521 732 PREDICTED: cullin-3A-like [Glycine max] 0.937 0.713 0.869 0.0
356526914 732 PREDICTED: cullin-3A-like [Glycine max] 0.937 0.713 0.867 0.0
225425720 733 PREDICTED: cullin-3A [Vitis vinifera] 0.937 0.712 0.896 0.0
225452781 733 PREDICTED: cullin-3B [Vitis vinifera] gi 0.937 0.712 0.869 0.0
357516169 731 Cullin 3-like protein [Medicago truncatu 0.937 0.714 0.860 0.0
297845492 732 ATCUL3/ATCUL3A/CUL3/CUL3A [Arabidopsis l 0.937 0.713 0.846 0.0
15223361 732 cullin 3 [Arabidopsis thaliana] gi|75315 0.937 0.713 0.844 0.0
>gi|255562822|ref|XP_002522416.1| cullin, putative [Ricinus communis] gi|223538301|gb|EEF39908.1| cullin, putative [Ricinus communis] Back     alignment and taxonomy information
 Score = 1030 bits (2662), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 493/522 (94%), Positives = 506/522 (96%)

Query: 1   MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILM 60
           MVLHKFGEKLYSGLVSTMT HLKEISKSIEAAQG SFLEELNRKWNDHNKALQMIRDILM
Sbjct: 1   MVLHKFGEKLYSGLVSTMTSHLKEISKSIEAAQGDSFLEELNRKWNDHNKALQMIRDILM 60

Query: 61  YMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMR 120
           YMDRTYIPSTHKTPVHELGLNLWRDNI+ S+KIQTRLLNTLLELVHRERTGEVI+RGLMR
Sbjct: 61  YMDRTYIPSTHKTPVHELGLNLWRDNIIHSSKIQTRLLNTLLELVHRERTGEVIDRGLMR 120

Query: 121 NIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMER 180
           NIIKMLMDLG  VYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAE+RLNEE+ER
Sbjct: 121 NIIKMLMDLGSLVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAEKRLNEEIER 180

Query: 181 VTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVP 240
           VTHYLDAKSE KITNVVEKEMIANHM RLVHM+NSGLVNMLLDDKYEDLGRMYNLFRRV 
Sbjct: 181 VTHYLDAKSEVKITNVVEKEMIANHMLRLVHMENSGLVNMLLDDKYEDLGRMYNLFRRVS 240

Query: 241 SGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQ 300
           +GL TIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDE+DKYD+IIS AFNNDKTFQ
Sbjct: 241 NGLQTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDERDKYDSIISLAFNNDKTFQ 300

Query: 301 NALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDV 360
           NALNSSFEYFINLN RSPEFISLFVDDKLRKGLKGVSEEDVE ILDKVMMLFRYLQEKDV
Sbjct: 301 NALNSSFEYFINLNARSPEFISLFVDDKLRKGLKGVSEEDVEIILDKVMMLFRYLQEKDV 360

Query: 361 FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEF 420
           FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDT+  F
Sbjct: 361 FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTIQGF 420

Query: 421 YASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQ 480
           YASHPELGD  TLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQ
Sbjct: 421 YASHPELGDGPTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQ 480

Query: 481 TNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 522
           TNMG+ADIKATFG+GQKHELNVSTYQMCVLMLFNNADRLSY+
Sbjct: 481 TNMGTADIKATFGRGQKHELNVSTYQMCVLMLFNNADRLSYK 522

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224111260|ref|XP_002315795.1| predicted protein [Populus trichocarpa] gi|222864835|gb|EEF01966.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224099735|ref|XP_002311598.1| predicted protein [Populus trichocarpa] gi|222851418|gb|EEE88965.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356567521|ref|XP_003551967.1| PREDICTED: cullin-3A-like [Glycine max] Back     alignment and taxonomy information
>gi|356526914|ref|XP_003532060.1| PREDICTED: cullin-3A-like [Glycine max] Back     alignment and taxonomy information
>gi|225425720|ref|XP_002275251.1| PREDICTED: cullin-3A [Vitis vinifera] Back     alignment and taxonomy information
>gi|225452781|ref|XP_002283300.1| PREDICTED: cullin-3B [Vitis vinifera] gi|147833364|emb|CAN72935.1| hypothetical protein VITISV_020617 [Vitis vinifera] Back     alignment and taxonomy information
>gi|357516169|ref|XP_003628373.1| Cullin 3-like protein [Medicago truncatula] gi|355522395|gb|AET02849.1| Cullin 3-like protein [Medicago truncatula] Back     alignment and taxonomy information
>gi|297845492|ref|XP_002890627.1| ATCUL3/ATCUL3A/CUL3/CUL3A [Arabidopsis lyrata subsp. lyrata] gi|297336469|gb|EFH66886.1| ATCUL3/ATCUL3A/CUL3/CUL3A [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223361|ref|NP_174005.1| cullin 3 [Arabidopsis thaliana] gi|75315944|sp|Q9ZVH4.1|CUL3A_ARATH RecName: Full=Cullin-3A; Short=AtCUL3a gi|9295728|gb|AAF87034.1|AC006535_12 T24P13.25 [Arabidopsis thaliana] gi|4262186|gb|AAD14503.1| Highly similar to cullin 3 [Arabidopsis thaliana] gi|34364502|emb|CAC87120.1| cullin 3a [Arabidopsis thaliana] gi|332192626|gb|AEE30747.1| cullin 3 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2200670 732 CUL3 "AT1G26830" [Arabidopsis 0.937 0.713 0.844 1.3e-242
TAIR|locus:2205020 732 CUL3B "AT1G69670" [Arabidopsis 0.937 0.713 0.842 4e-241
DICTYBASE|DDB_G0284903 769 culC "cullin C" [Dictyostelium 0.935 0.677 0.554 3e-156
UNIPROTKB|Q13618 768 CUL3 "Cullin-3" [Homo sapiens 0.894 0.648 0.538 6.7e-147
UNIPROTKB|E1BYQ3 746 CUL3 "Uncharacterized protein" 0.895 0.668 0.535 1.8e-146
UNIPROTKB|E1BIN5 768 CUL3 "Uncharacterized protein" 0.894 0.648 0.536 1.8e-146
UNIPROTKB|F1PU58 750 CUL3 "Uncharacterized protein" 0.894 0.664 0.536 1.8e-146
RGD|1308190 768 Cul3 "cullin 3" [Rattus norveg 0.894 0.648 0.536 1.8e-146
ZFIN|ZDB-GENE-081007-1 766 cul3b "cullin 3b" [Danio rerio 0.883 0.642 0.538 3.7e-146
MGI|MGI:1347360 768 Cul3 "cullin 3" [Mus musculus 0.894 0.648 0.534 6e-146
TAIR|locus:2200670 CUL3 "AT1G26830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2338 (828.1 bits), Expect = 1.3e-242, P = 1.3e-242
 Identities = 441/522 (84%), Positives = 483/522 (92%)

Query:     1 MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILM 60
             MVLHKFGEKLY+G ++TMT HLKE SK IEAAQGGSFLEELN+KWN+HNKAL+MIRDILM
Sbjct:    59 MVLHKFGEKLYTGFIATMTSHLKEKSKLIEAAQGGSFLEELNKKWNEHNKALEMIRDILM 118

Query:    61 YMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMR 120
             YMDRTYI ST KT VH +GLNLWRDN+V   KI TRLLNTLL+LV +ER GEVI+RGLMR
Sbjct:   119 YMDRTYIESTKKTHVHPMGLNLWRDNVVHFTKIHTRLLNTLLDLVQKERIGEVIDRGLMR 178

Query:   121 NIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEEMER 180
             N+IKM MDLG SVYQEDFEKPFL+ S+EFYKVESQ+FIE CDCG+YLKK+E+RL EE+ER
Sbjct:   179 NVIKMFMDLGESVYQEDFEKPFLDASSEFYKVESQEFIESCDCGDYLKKSEKRLTEEIER 238

Query:   181 VTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFRRVP 240
             V HYLDAKSE KIT+VVEKEMIANHM RLVHM+NSGLVNMLL+DKYEDLGRMYNLFRRV 
Sbjct:   239 VAHYLDAKSEEKITSVVEKEMIANHMQRLVHMENSGLVNMLLNDKYEDLGRMYNLFRRVT 298

Query:   241 SGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQ 300
             +GL+T+R+VMTSHLRE GKQLVTDPE+ KDPVEFVQRLLDE+DKYD II++AF NDKTFQ
Sbjct:   299 NGLVTVRDVMTSHLREMGKQLVTDPEKSKDPVEFVQRLLDERDKYDKIINTAFGNDKTFQ 358

Query:   301 NALNSSFEYFINLNPRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDV 360
             NALNSSFEYFINLN RSPEFISLFVDDKLRKGLKG+++ DVE ILDKVMMLFRYLQEKDV
Sbjct:   359 NALNSSFEYFINLNARSPEFISLFVDDKLRKGLKGITDVDVEVILDKVMMLFRYLQEKDV 418

Query:   361 FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEF 420
             FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTS+DTM  F
Sbjct:   419 FEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSEDTMRGF 478

Query:   421 YASHPELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTGRRLSWQ 480
             Y SHPEL +  TL+VQVLTTGSWPTQP+V CNLPAE+S LCEKFRSYYLGTHTGRRLSWQ
Sbjct:   479 YGSHPELSEGPTLIVQVLTTGSWPTQPAVPCNLPAEVSVLCEKFRSYYLGTHTGRRLSWQ 538

Query:   481 TNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 522
             TNMG+ADIKA FGKGQKHELNVST+QMCVLMLFNN+DRLSY+
Sbjct:   539 TNMGTADIKAIFGKGQKHELNVSTFQMCVLMLFNNSDRLSYK 580
GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;TAS
GO:0031461 "cullin-RING ubiquitin ligase complex" evidence=IEA
GO:0031625 "ubiquitin protein ligase binding" evidence=IEA
GO:0000151 "ubiquitin ligase complex" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0009639 "response to red or far red light" evidence=RCA;IMP
GO:0009911 "positive regulation of flower development" evidence=IMP
GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0009960 "endosperm development" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
GO:0008284 "positive regulation of cell proliferation" evidence=RCA
GO:0009630 "gravitropism" evidence=RCA
TAIR|locus:2205020 CUL3B "AT1G69670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0284903 culC "cullin C" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|Q13618 CUL3 "Cullin-3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BYQ3 CUL3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BIN5 CUL3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1PU58 CUL3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1308190 Cul3 "cullin 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-081007-1 cul3b "cullin 3b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1347360 Cul3 "cullin 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B5DF89CUL3_RATNo assigned EC number0.51990.93530.6783yesno
Q9ZVH4CUL3A_ARATHNo assigned EC number0.84480.93710.7131yesno
A4IHP4CUL3_XENTRNo assigned EC number0.51360.93710.6796yesno
Q13618CUL3_HUMANNo assigned EC number0.52170.93530.6783yesno
Q9JLV5CUL3_MOUSENo assigned EC number0.51810.93530.6783yesno
Q54NZ5CUL3_DICDINo assigned EC number0.55400.93530.6775yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00100858
hypothetical protein (733 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
pfam00888603 pfam00888, Cullin, Cullin family 0.0
COG5647 773 COG5647, COG5647, Cullin, a subunit of E3 ubiquiti 1e-108
smart00182143 smart00182, CULLIN, Cullin 8e-53
>gnl|CDD|216175 pfam00888, Cullin, Cullin family Back     alignment and domain information 
 Score =  538 bits (1388), Expect = 0.0
 Identities = 226/530 (42%), Positives = 343/530 (64%), Gaps = 15/530 (2%)

Query: 1   MVLHKFGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILM 60
            V HK GEKLY+ L   +  ++  + KSI        L+   ++WN  + +++++ +I M
Sbjct: 31  YVPHKLGEKLYNRLKEYLEEYVAALLKSILENDDEVLLKTYYKEWNKFSTSMKILNNIFM 90

Query: 61  YMDRTYIPSTHKTPVHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMR 120
           Y++R Y+   +   V+ELGL++WR+++   + I+ +L++ LL L+ +ER GE+I+R L++
Sbjct: 91  YLNRYYVKRKNLDGVYELGLDIWRESLF--DPIKDKLIDALLRLIEKERLGEIIDRSLIK 148

Query: 121 NIIKMLMDLGP---SVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEE 177
           N++ M ++LG     VY+EDFEKPFLE ++EFYK ES KF++     EY+KK E RL EE
Sbjct: 149 NVLDMFVELGLDKLEVYKEDFEKPFLEATSEFYKKESSKFLQENSVSEYMKKVEERLEEE 208

Query: 178 MERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFR 237
            ERV  YL + +E K+  V EK +I  H+  L    +S    +L ++K EDL RMY L  
Sbjct: 209 EERVRLYLHSSTEKKLIEVCEKVLIEKHLEFL----HSEFQRLLDNEKIEDLRRMYRLLS 264

Query: 238 RVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDK 297
           RVP+GL  +R+    H+++ G   V+D     DP ++VQ LL+  DKYD++++ AFNND 
Sbjct: 265 RVPNGLEPLRKYFEKHIKKEGLAAVSDLAVETDPKDYVQTLLELHDKYDSLVNEAFNNDA 324

Query: 298 TFQNALNSSFEYFINLNP-RSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQ 356
            F NAL+ +FE FIN N  +S E ++ + D  L+K LKG++EE++E  LDK+++LF+Y++
Sbjct: 325 LFLNALDKAFEEFINSNSSKSAELLAKYCDSLLKKSLKGLNEEELEEKLDKIIVLFKYIE 384

Query: 357 EKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDT 416
           +KDVFEK+Y++ LAKRLL+G + SDDAE+ +I KLK ECGYQFTSKLE MF D+  S++ 
Sbjct: 385 DKDVFEKFYRKMLAKRLLNGTSASDDAEKKMIEKLKQECGYQFTSKLERMFKDISLSKEL 444

Query: 417 MHEFYASH----PELGDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTH 472
            + F          L +   L V VL+TG WPT P+   +LP E+    EKF  +Y   H
Sbjct: 445 NNSFKNHLENNLDLLSEGIDLSVLVLSTGFWPTLPTEPFSLPEELEKALEKFEEFYSKKH 504

Query: 473 TGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 522
           +GR+L+W  ++G  ++KA F     +EL VSTYQM VL+LFN+ + L+ +
Sbjct: 505 SGRKLTWLHSLGRGELKAEFNDK-TYELTVSTYQMAVLLLFNDQEELTVE 553

Length = 603
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|214545 smart00182, CULLIN, Cullin Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
KOG2166 725 consensus Cullins [Cell cycle control, cell divisi 100.0
PF00888588 Cullin: Cullin family; InterPro: IPR001373 Cullins 100.0
COG5647 773 Cullin, a subunit of E3 ubiquitin ligase [Posttran 100.0
KOG2167 661 consensus Cullins [Cell cycle control, cell divisi 100.0
KOG2284 728 consensus E3 ubiquitin ligase, Cullin 2 component 100.0
KOG2285 777 consensus E3 ubiquitin ligase, Cullin 1 component 100.0
smart00182142 CULLIN Cullin. 100.0
KOG2165 765 consensus Anaphase-promoting complex (APC), subuni 99.96
PF08539158 HbrB: HbrB-like; InterPro: IPR013745 HbrB is invol 94.76
KOG2167661 consensus Cullins [Cell cycle control, cell divisi 91.1
PF1341248 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 82.73
PF1280262 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP 80.46
>KOG2166 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=1.8e-87  Score=730.82  Aligned_cols=539  Identities=41%  Similarity=0.700  Sum_probs=505.3

Q ss_pred             CCCCcch----HHHHHHHHHHHHHHHHHHH-HHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC-CCcc
Q 008667            1 MVLHKFG----EKLYSGLVSTMTLHLKEIS-KSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPST-HKTP   74 (557)
Q Consensus         1 lc~~k~~----e~LY~~l~~~i~~~l~~i~-~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~-~~~~   74 (557)
                      ||++++|    ++||+++++++.+|+..++ +.+.+..++.+|+.+...|.+|+.++.+++++|+||||+||+++ +..+
T Consensus        51 ~~~~k~~~~~~~~lY~~l~~~~~~yl~~~~~~~~~~~~~~~~l~~~~~~W~~~~~~~~~~~~i~~YldR~~v~~~~~~~~  130 (725)
T KOG2166|consen   51 MCLQKPPHDYSQQLYDKYREVIEEYLIQTVLPALREKHDEYMLRELAKRWNNHKVLVRWLSDFFMYLDRYYVAQSRRKLP  130 (725)
T ss_pred             HhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            5889999    9999999999999999955 66666777899999999999999999999999999999999976 6666


Q ss_pred             HHHHH-HHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhC---cccchhhchhhHHHHHHHHH
Q 008667           75 VHELG-LNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG---PSVYQEDFEKPFLEVSAEFY  150 (557)
Q Consensus        75 i~~l~-l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg---~~~Y~~~FE~~~L~~t~~yY  150 (557)
                      +.+++ +.+|+..++.. ++.+++.++++.+|..+|.|+.+|+..|+++++++..+|   ..+|...||++|++.|..||
T Consensus       131 v~~~~~l~l~r~~v~~~-~~~~~~~~all~lI~~eR~ge~in~~~i~~~~~~~~~lg~~~~s~Y~~~Fe~~fl~~t~~~y  209 (725)
T KOG2166|consen  131 TLNEVGLTCFRDLVYKF-EMQSEAIDALLALIHKEREGEQIDRELIRNVIDVYVELGMGELSFYEEDFERKFLQDTASYY  209 (725)
T ss_pred             cccceeeEEeehHHHHH-HHHHHHHHHHHHHHHhhcccccccHHHHhhHHHHHHhccccchhHHHHHhHHHHHHHHHHHH
Confidence            66666 99999998874 599999999999999999999999999999999999998   57999999999999999999


Q ss_pred             HHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHHHHH
Q 008667          151 KVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLG  230 (557)
Q Consensus       151 ~~~~~~~~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~  230 (557)
                      ..++++|+...++.+|+.+++.++.+|..|+..|++..+.+++.+.++..++..+++.+++..++|+..|+.+++.++|.
T Consensus       210 ~~~~~~~l~~~~~~~yl~k~e~~l~~e~~r~~~yl~~~~e~~~~~~le~~~~~~~~~~~~e~~~sgf~~~l~~~~~edl~  289 (725)
T KOG2166|consen  210 SEEASEWLEENSCLDYLKKIEECLKEERERVTHYLHSSTEPKLVEVVEDELIVVFADDLEEMEHSGFRALLNDDKLEDLS  289 (725)
T ss_pred             HHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHhhhhhcccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHhccchhHHH
Confidence            99999999988999999999999999999999999888888888888888888888888888899999999999999999


Q ss_pred             HHHHhhccCCCChHHHHHHHHHHHHHHhhHhhcCcccC--CCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHH
Q 008667          231 RMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERL--KDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFE  308 (557)
Q Consensus       231 ~ly~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~--~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~af~  308 (557)
                      ++|+|+++++.|++.+++.++.|++.+|..++......  .+|..+++.++++++++..++..||++|..|.++++.||.
T Consensus       290 ~my~l~~r~~~gl~~l~~~~~~~~~~eg~~l~~r~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~f~~d~~f~~~ld~a~~  369 (725)
T KOG2166|consen  290 RMYRLFRRILPGLEPLASVFKQHVREEGNALVARPAETAATNPVEYVQGLLELHDKYKVLVKECFANDTLFKKALDAAFE  369 (725)
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHhhHHHHhhhhhhhcccchHHHHhccHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            99999999999999999999999999998888776544  6899999999999999999999999999999999999999


Q ss_pred             HhhccCCCcH-HHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHcCCCCCChHHHHHH
Q 008667          309 YFINLNPRSP-EFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSL  387 (557)
Q Consensus       309 ~~ln~~~~~~-e~La~y~D~~lk~~~~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~~s~s~~~E~~~  387 (557)
                      .|+|.+...+ |+||+|||.++|++.++.++++++..+++++.+|+|+.+||+|+.+|+++||||||+++|.|+++|+.|
T Consensus       370 ~fin~n~~~~~E~la~y~D~~lkk~~k~~~e~~ie~~l~~v~~l~~yisdKdvF~~~Ykk~lakRLl~~~S~sdd~E~~m  449 (725)
T KOG2166|consen  370 EFINKNVATSAELLATYCDDILKKGSKKLSDEAIEDTLEKVVKLLKYISDKDVFAEFYKKVLARRLLFDRSASDDHEKSL  449 (725)
T ss_pred             HHHcccCCCcHHHHHHHhHHHhcccccCCchhHHHhHhhcceeeeeeccHHHHHHHHHHHHHHHHHhhcCccchHHHHHH
Confidence            9999977666 999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcccchhHhHHHhhhhHHhhHHHHHHHhhhcCCC-CCCcceEEEEeccCCCCCCCCCCCCCcHhHHHHHHHHHH
Q 008667          388 IVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPEL-GDSRTLVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRS  466 (557)
Q Consensus       388 i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~~-~~~~~~~~~vls~~~WP~~~~~~~~lP~~l~~~~~~f~~  466 (557)
                      |.+|+++||.+||+||++|++|+..|++++..|.++...+ ..+++|.|.|||.|+||.+++.++.||++|.++++.|..
T Consensus       450 Isklk~~~g~~~T~kL~~Mf~D~~~s~~l~~~F~~~~~~~~~~~~df~v~VLt~g~WP~~~~~~~~LP~el~~~~e~F~~  529 (725)
T KOG2166|consen  450 ITKLKNLCGEQFTSKLEGMFTDLTLSRELQTAFADYANYSANLGIDFTVTVLTTGFWPSYKSTDINLPSEMSDCVEMFKG  529 (725)
T ss_pred             HHHHHHHHHhHHHHHHHhhcccHHHHHHHHHHHHhhhchhccCCCceeEEEeecCCcCCccCCCCCCChhHHHHHHHHHH
Confidence            9999999999999999999999999999999999762211 246999999999999999888889999999999999999


Q ss_pred             HHhccCCCceeeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHhhhhhcc
Q 008667          467 YYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRLEKVPAI  541 (557)
Q Consensus       467 ~Y~~~~~~RkL~w~~~lg~~~l~~~~~~~~~~~l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l~~~~~~  541 (557)
                      ||.++|+||+|.|+|++|+|+|.++|.+ ++++++||++||+||++||+.+.+|+++|.+.|+++.+.+..++..
T Consensus       530 ~Y~~kh~gR~L~w~~~l~~~ei~~~~~~-~~~~l~vst~Qm~VLlLFN~~d~lt~~eI~~~t~i~~~~l~~~L~S  603 (725)
T KOG2166|consen  530 FYATKHNGRRLTWIYSLGTGEINGKFDK-KTVELQVSTYQMAVLLLFNNTEKLTYEEILEQTNLGHEDLARLLQS  603 (725)
T ss_pred             HHhhccCCCeeeeeeccCceEEEEEecC-ceEEEEEEhHHHHHHHHccchhhccHHHHHHHhCCCHHHHHHHHHH
Confidence            9999999999999999999999999998 7999999999999999999999999999999999999998865443

>PF00888 Cullin: Cullin family; InterPro: IPR001373 Cullins are a family of hydrophobic proteins that act as scaffolds for ubiquitin ligases (E3) Back     alignment and domain information
>COG5647 Cullin, a subunit of E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG2284 consensus E3 ubiquitin ligase, Cullin 2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG2285 consensus E3 ubiquitin ligase, Cullin 1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00182 CULLIN Cullin Back     alignment and domain information
>KOG2165 consensus Anaphase-promoting complex (APC), subunit 2 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF08539 HbrB: HbrB-like; InterPro: IPR013745 HbrB is involved in hyphal growth and polarity [] Back     alignment and domain information
>KOG2167 consensus Cullins [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A Back     alignment and domain information
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
2hye_C 759 Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Compl 1e-105
4a0k_A 742 Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp 1e-105
4a0l_E 726 Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp 1e-101
4a0c_C 741 Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 1e-101
4ap2_B410 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-89
4apf_B388 Crystal Structure Of The Human Klhl11-cul3 Complex 1e-89
1u6g_A 776 Crystal Structure Of The Cand1-Cul1-Roc1 Complex Le 6e-82
1ldj_A 760 Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiqu 7e-82
4eoz_B364 Crystal Structure Of The Spop Btb Domain Complexed 1e-76
1ldk_B 366 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 4e-40
4a64_A354 Crystal Structure Of The N-Terminal Domain Of Human 6e-40
3rtr_A 368 A Ring E3-Substrate Complex Poised For Ubiquitin-Li 8e-38
4f52_A282 Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 1e-37
1ldk_A396 Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiqu 6e-37
3dpl_C 382 Structural Insights Into Nedd8 Activation Of Cullin 5e-19
3dqv_C 382 Structural Insights Into Nedd8 Activation Of Cullin 1e-17
2wzk_A391 Structure Of The Cul5 N-Terminal Domain At 2.05a Re 1e-14
>pdb|2HYE|C Chain C, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex Length = 759 Back     alignment and structure 
Iteration: 1

 Score =  379 bits (974), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 202/490 (41%), Positives = 303/490 (61%), Gaps = 13/490 (2%)
Query: 37  FLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTHKTP-VHELGLNLWRDNIVRSNKIQT 95
           FL+++N  W DH + + MIR I +++DRTY+      P + ++GL L+R +I+    +Q+
Sbjct: 131 FLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQS 190
Query: 96  RLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQ 155
           + ++ +L L+ RER+GE ++R L+R+++ ML DL   VY++ FE  FLE +   Y  E Q
Sbjct: 191 KTIDGILLLIERERSGEAVDRSLLRSLLGMLSDL--QVYKDSFELKFLEETNCLYAAEGQ 248
Query: 156 KFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNS 215
           + ++  +  EYL    +RL EE +RV  YLD  ++  +   VEK+++  H+  ++     
Sbjct: 249 RLMQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQ---K 305
Query: 216 GLVNMLLDDKYEDLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFV 275
           GL ++L +++  DL +MY LF RV  G   + +  + +++  G  +V +PE+ KD    V
Sbjct: 306 GLDHLLDENRVPDLAQMYQLFSRVRGGQQALLQHWSEYIKTFGTAIVINPEKDKD---MV 362
Query: 276 QRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINLNPRSP-EFISLFVDDKLRKGLK 334
           Q LLD KDK D++I   F  ++ F N +  SFE FIN  P  P E I+  VD KLR G K
Sbjct: 363 QDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNK 422
Query: 335 GVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTE 394
             ++E++E  LDK+M+LFR++  KDVFE +YK+ LAKRLL GK+ S DAE+S++ KLK E
Sbjct: 423 EATDEELERTLDKIMILFRFIHGKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHE 482
Query: 395 CGYQFTSKLEGMFTDMKTSQDTMHEFYASHPELGDSRT--LVVQVLTTGSWPTQPSVTCN 452
           CG  FTSKLEGMF DM+ S+D M  F        DS    L V +LT G WPT   +  +
Sbjct: 483 CGAAFTSKLEGMFKDMELSKDIMVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVH 542
Query: 453 LPAEMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLML 512
           L  EM  L E F+++YLG H+GR+L WQT +G A +KA F +G+K E  VS +Q  VL++
Sbjct: 543 LTPEMIKLQEVFKAFYLGKHSGRKLQWQTTLGHAVLKAEFKEGKK-EFQVSLFQTLVLLM 601
Query: 513 FNNADRLSYQ 522
           FN  D  S++
Sbjct: 602 FNEGDGFSFE 611
>pdb|4A0K|A Chain A, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 742 Back     alignment and structure
>pdb|4A0L|E Chain E, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic Site Containing Dna-Duplex Length = 726 Back     alignment and structure
>pdb|4A0C|C Chain C, Structure Of The Cand1-Cul4b-Rbx1 Complex Length = 741 Back     alignment and structure
>pdb|4AP2|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 410 Back     alignment and structure
>pdb|4APF|B Chain B, Crystal Structure Of The Human Klhl11-cul3 Complex At 3.1a Resolution Length = 388 Back     alignment and structure
>pdb|1U6G|A Chain A, Crystal Structure Of The Cand1-Cul1-Roc1 Complex Length = 776 Back     alignment and structure
>pdb|1LDJ|A Chain A, Structure Of The Cul1-rbx1-skp1-f Boxskp2 Scf Ubiquitin Ligase Complex Length = 760 Back     alignment and structure
>pdb|4EOZ|B Chain B, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 364 Back     alignment and structure
>pdb|1LDK|B Chain B, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 366 Back     alignment and structure
>pdb|4A64|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Cul4b At 2.57a Resolution Length = 354 Back     alignment and structure
>pdb|3RTR|A Chain A, A Ring E3-Substrate Complex Poised For Ubiquitin-Like Protein Transfer: Structural Insights Into Cullin-Ring Ligases Length = 368 Back     alignment and structure
>pdb|4F52|A Chain A, Structure Of A Glomulin-Rbx1-Cul1 Complex Length = 282 Back     alignment and structure
>pdb|1LDK|A Chain A, Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex Length = 396 Back     alignment and structure
>pdb|3DPL|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|3DQV|C Chain C, Structural Insights Into Nedd8 Activation Of Cullin-Ring Ligases: Conformational Control Of Conjugation Length = 382 Back     alignment and structure
>pdb|2WZK|A Chain A, Structure Of The Cul5 N-Terminal Domain At 2.05a Resolution Length = 391 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 1e-171
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 1e-168
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 1e-103
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 2e-93
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 3e-85
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 1e-81
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 4e-68
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Length = 759 Back     alignment and structure
 Score =  502 bits (1294), Expect = e-171
 Identities = 207/528 (39%), Positives = 313/528 (59%), Gaps = 15/528 (2%)

Query: 1   MVLHKFGEKLYSGLVSTMTLHLKEISKSI--EAAQGGSFLEELNRKWNDHNKALQMIRDI 58
           +  HK    LY  L      H++        ++     FL+++N  W DH + + MIR I
Sbjct: 93  LCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSI 152

Query: 59  LMYMDRTYIPSTHKTP-VHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRG 117
            +++DRTY+      P + ++GL L+R +I+    +Q++ ++ +L L+ RER+GE ++R 
Sbjct: 153 FLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRS 212

Query: 118 LMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEE 177
           L+R+++ ML DL   VY++ FE  FLE +   Y  E Q+ ++  +  EYL    +RL EE
Sbjct: 213 LLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEE 270

Query: 178 MERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFR 237
            +RV  YLD  ++  +   VEK+++  H+  ++     GL ++L +++  DL +MY LF 
Sbjct: 271 GDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFS 327

Query: 238 RVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDK 297
           RV  G   + +  + +++  G  +V +PE+ KD    VQ LLD KDK D++I   F  ++
Sbjct: 328 RVRGGQQALLQHWSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNE 384

Query: 298 TFQNALNSSFEYFINLNP-RSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQ 356
            F N +  SFE FIN  P +  E I+  VD KLR G K  ++E++E  LDK+M+LFR++ 
Sbjct: 385 RFVNLMKESFETFINKRPNKPAELIAKHVDSKLRAGNKEATDEELERTLDKIMILFRFIH 444

Query: 357 EKDVFEKYYKQHLAKRLLSGKTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDT 416
            KDVFE +YK+ LAKRLL GK+ S DAE+S++ KLK ECG  FTSKLEGMF DM+ S+D 
Sbjct: 445 GKDVFEAFYKKDLAKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMFKDMELSKDI 504

Query: 417 MHEFYASHPELGDSRT--LVVQVLTTGSWPTQPSVTCNLPAEMSALCEKFRSYYLGTHTG 474
           M  F        DS    L V +LT G WPT   +  +L  EM  L E F+++YLG H+G
Sbjct: 505 MVHFKQHMQNQSDSGPIDLTVNILTMGYWPTYTPMEVHLTPEMIKLQEVFKAFYLGKHSG 564

Query: 475 RRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQ 522
           R+L WQT +G A +KA F +G K E  VS +Q  VL++FN  D  S++
Sbjct: 565 RKLQWQTTLGHAVLKAEFKEG-KKEFQVSLFQTLVLLMFNEGDGFSFE 611
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Length = 760 Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} PDB: 4apf_B Length = 410 Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Length = 364 Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Length = 354 Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Length = 391 Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Length = 382 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
1ldj_A 760 Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc 100.0
2hye_C 759 Cullin-4A, CUL-4A; beta propeller, ring finger, zi 100.0
4ap2_B410 Cullin-3, CUL-3; ubiquitination, E3 ligase, cell c 100.0
4eoz_B364 Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, pro 100.0
4a64_A354 Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo 100.0
2wzk_A391 Cullin-5, CUL-5; UBL conjugation pathway, HIV, pho 100.0
3dpl_C 382 Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus int 100.0
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A Back     alignment and structure
Probab=100.00  E-value=8e-102  Score=872.65  Aligned_cols=526  Identities=34%  Similarity=0.601  Sum_probs=499.9

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCCC------CccHHHHH
Q 008667            6 FGEKLYSGLVSTMTLHLKEISKSIEAAQGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPSTH------KTPVHELG   79 (557)
Q Consensus         6 ~~e~LY~~l~~~i~~~l~~i~~~l~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~------~~~i~~l~   79 (557)
                      +|++||+++++++++|+..++..+....++++|..|.++|.+|+.++.+|+++|+||||+||++.+      .++|+++|
T Consensus        68 ~g~~LY~~l~~~l~~~l~~~~~~~~~~~~e~lL~~~~~~W~~~~~~~~~i~~if~YLdR~yv~~~~~~g~~~~~~I~~lg  147 (760)
T 1ldj_A           68 VGLELYKRLKEFLKNYLTNLLKDGEDLMDESVLKFYTQQWEDYRFSSKVLNGICAYLNRHWVRRECDEGRKGIYEIYSLA  147 (760)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHHHHHHHHTHHHHHHSSSCCC-------CCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcccccccCCCcccHHHHH
Confidence            789999999999999999977766566678999999999999999999999999999999999865      78999999


Q ss_pred             HHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhC------------cccchhhchhhHHHHHH
Q 008667           80 LNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLG------------PSVYQEDFEKPFLEVSA  147 (557)
Q Consensus        80 l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg------------~~~Y~~~FE~~~L~~t~  147 (557)
                      +.+||++||.  .+.+++.++++++|.++|+|+.+|+.+|+++++||++||            ..+|.+.||++||++|.
T Consensus       148 L~~fr~~vf~--~l~~~l~~~lL~lI~~eR~Ge~id~~lik~vi~ml~~Lg~~~~~~~~~~~~l~vY~~~FE~~fL~~t~  225 (760)
T 1ldj_A          148 LVTWRDCLFR--PLNKQVTNAVLKLIEKERNGETINTRLISGVVQSYVELGLNEDDAFAKGPTLTVYKESFESQFLADTE  225 (760)
T ss_dssp             HHTTHHHHTT--TTTTHHHHHHHHHHTTTSCCTTCCTHHHHHHHHHHHHTSCCSSSSSCSSCCCHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHH--HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCcccccccccccchhhhHHHHHHHHHHHHH
Confidence            9999999999  899999999999999999999999999999999999986            36899999999999999


Q ss_pred             HHHHHHHHHhHhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHH
Q 008667          148 EFYKVESQKFIECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYE  227 (557)
Q Consensus       148 ~yY~~~~~~~~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~  227 (557)
                      .||+.++++|+++.++++||++|+.++++|.+||..||+++|.++|.++|+++||.+|++.|+    +|+..||++++.+
T Consensus       226 ~fY~~es~~~l~~~~~~~Yl~~~e~~l~eE~~R~~~yL~~~t~~~l~~~~~~~Li~~~~~~l~----~~~~~ll~~~~~~  301 (760)
T 1ldj_A          226 RFYTRESTEFLQQNPVTEYMKKAEARLLEEQRRVQVYLHESTQDELARKCEQVLIEKHLEIFH----TEFQNLLDADKNE  301 (760)
T ss_dssp             HHHHHHHHHHHHHSCTTSSHHHHHHHHHHHHHTTTTTTCSSSSHHHHHHHHHHHSSSSSHHHH----HHHHHHHHSCCTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHcCCHH
Confidence            999999999999999999999999999999999999999999999999999999999999995    6999999999999


Q ss_pred             HHHHHHHhhccCCCChHHHHHHHHHHHHHHhhHhhcCccc--CCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHH
Q 008667          228 DLGRMYNLFRRVPSGLLTIREVMTSHLRETGKQLVTDPER--LKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNS  305 (557)
Q Consensus       228 ~L~~ly~L~~~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~--~~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~  305 (557)
                      +|++||+||+++++|++.|+..|++||++.|.+++.+...  ..++..||+.|+++|++|+.++..||++|+.|.+++++
T Consensus       302 dL~~my~L~~rv~~gl~~l~~~~~~~i~~~G~~~v~~~~~~~~~~~~~~V~~ll~l~~k~~~lv~~~F~~d~~f~~al~~  381 (760)
T 1ldj_A          302 DLGRMYNLVSRIQDGLGELKKLLETHIHNQGLAAIEKCGEAALNDPKMYVQTVLDVHKKYNALVMSAFNNDAGFVAALDK  381 (760)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHTTSGGGCHHHHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcchHHHHHHHHHHHHHHHHHHHHHHhhcccccCHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence            9999999999999999999999999999999999876422  24789999999999999999999999999999999999


Q ss_pred             HHHHhhccC---------CCcHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHcCC
Q 008667          306 SFEYFINLN---------PRSPEFISLFVDDKLRKGLKGVSEEDVETILDKVMMLFRYLQEKDVFEKYYKQHLAKRLLSG  376 (557)
Q Consensus       306 af~~~ln~~---------~~~~e~La~y~D~~lk~~~~~~~~~~~e~~l~~i~~lf~~l~~Kd~F~~~Y~~~La~RLL~~  376 (557)
                      ||+.|+|.+         .++||+||+|||.+||+|.++.++++++..+++++.||+|+++||+|+.+|+++||+|||++
T Consensus       382 af~~~iN~~~~~~~~~~~~~~~E~la~y~D~~Lkk~~k~~~e~e~e~~L~~i~~lf~~i~~KDvF~~~Y~~~LakRLL~~  461 (760)
T 1ldj_A          382 ACGRFINNNAVTKMAQSSSKSPELLARYCDSLLKKSSKNPEEAELEDTLNQVMVVFKYIEDKDVFQKFYAKMLAKRLVHQ  461 (760)
T ss_dssp             HHHHHHHSSHHHHHHTSTTHHHHHHHHHHHHHHBCCSSCCCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHhcCCccccccccccccHHHHHHHhHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence            999999975         78999999999999999999889999999999999999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHHHcccchhHhHHHhhhhHHhhHHHHHHHhhhcCC-CCCCcceEEEEeccCCCCCCCCCCCCCcH
Q 008667          377 KTVSDDAERSLIVKLKTECGYQFTSKLEGMFTDMKTSQDTMHEFYASHPE-LGDSRTLVVQVLTTGSWPTQPSVTCNLPA  455 (557)
Q Consensus       377 ~s~s~~~E~~~i~~Lk~~~G~~~~~kl~~M~~D~~~S~~l~~~f~~~~~~-~~~~~~~~~~vls~~~WP~~~~~~~~lP~  455 (557)
                      ++++.+.|+.||++||.+||.+||+||++||+||..|++++..|+++..+ ...+++|+|.|||+++||.++..++.+|+
T Consensus       462 ~s~s~d~E~~~i~~Lk~~~G~~~t~kle~M~~Di~~S~~l~~~f~~~~~~~~~~~~~~~v~VLs~~~WP~~~~~~~~lP~  541 (760)
T 1ldj_A          462 NSASDDAEASMISKLKQACGFEYTSKLQRMFQDIGVSKDLNEQFKKHLTNSEPLDLDFSIQVLSSGSWPFQQSCTFALPS  541 (760)
T ss_dssp             CBSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSSEEEEEEEETTTSCCCCCSCCCCCG
T ss_pred             CCCChHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCeeEEecCCCCCCCCCCCCCcCCH
Confidence            99999999999999999999999999999999999999999999988654 33478999999999999998888999999


Q ss_pred             hHHHHHHHHHHHHhccCCCceeeeccCccceEEEEeeCCCcEEEEEecHHHHHHHHhhhCCCCcCHHHHHHhcCCChHHh
Q 008667          456 EMSALCEKFRSYYLGTHTGRRLSWQTNMGSADIKATFGKGQKHELNVSTYQMCVLMLFNNADRLSYQGNRAGNRDSCFRL  535 (557)
Q Consensus       456 ~l~~~~~~f~~~Y~~~~~~RkL~w~~~lg~~~l~~~~~~~~~~~l~vs~~Qa~iLl~Fn~~~~lt~~ei~~~t~~~~~~l  535 (557)
                      +|+.+++.|++||..+|+||+|+|.|++|+|+|+++|++ ++++++||++||+||++||+.++||+++|++.|||+.+.|
T Consensus       542 ~l~~~~~~F~~fY~~~~~~RkL~W~~~lg~~~l~~~~~~-~~~~l~vs~~Qa~iLllFn~~~~~t~~ei~~~t~i~~~~l  620 (760)
T 1ldj_A          542 ELERSYQRFTAFYASRHSGRKLTWLYQLSKGELVTNCFK-NRYTLQASTFQMAILLQYNTEDAYTVQQLTDSTQIKMDIL  620 (760)
T ss_dssp             GGHHHHHHHHHHTTTTCTTCCEEECGGGCCCEEEESSSS-SCCEEECCHHHHHHHHGGGSSSEEEHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCCeEEEecccccEEEEEEECC-ceEEEEEcHHHHHHHHHhcCCCCcCHHHHHHHHCcCHHHH
Confidence            999999999999999999999999999999999999997 8899999999999999999999999999999999999988


Q ss_pred             hhh
Q 008667          536 EKV  538 (557)
Q Consensus       536 ~~~  538 (557)
                      ...
T Consensus       621 ~r~  623 (760)
T 1ldj_A          621 AQV  623 (760)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E* Back     alignment and structure
>4ap2_B Cullin-3, CUL-3; ubiquitination, E3 ligase, cell cycle; HET: EDO; 2.80A {Homo sapiens} Back     alignment and structure
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} PDB: 4apf_B Back     alignment and structure
>4a64_A Cullin-4B, CUL4B, CUL-4B; cell cycle; 2.57A {Homo sapiens} Back     alignment and structure
>2wzk_A Cullin-5, CUL-5; UBL conjugation pathway, HIV, phosphoprotein, isopeptide bond, protein binding; 2.05A {Mus musculus} Back     alignment and structure
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 557
d2hyec2347 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapie 1e-92
d1ldja2394 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Hum 3e-89
d1ldja3276 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Huma 2e-74
d2hyec3273 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapien 2e-72
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 347 Back     information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  285 bits (730), Expect = 1e-92
 Identities = 104/315 (33%), Positives = 176/315 (55%), Gaps = 11/315 (3%)

Query: 1   MVLHKFGEKLYSGLVSTMTLHLKEISKSI--EAAQGGSFLEELNRKWNDHNKALQMIRDI 58
           +  HK    LY  L      H++        ++     FL+++N  W DH + + MIR I
Sbjct: 39  LCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSI 98

Query: 59  LMYMDRTYIPSTHKTP-VHELGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRG 117
            +++DRTY+      P + ++GL L+R +I+    +Q++ ++ +L L+ RER+GE ++R 
Sbjct: 99  FLFLDRTYVLQNSTLPSIWDMGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRS 158

Query: 118 LMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKFIECCDCGEYLKKAERRLNEE 177
           L+R+++ ML DL   VY++ FE  FLE +   Y  E Q+ ++  +  EYL    +RL EE
Sbjct: 159 LLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRLMQEREVPEYLNHVSKRLEEE 216

Query: 178 MERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFR 237
            +RV  YLD  ++  +   VEK+++  H+  ++     GL ++L +++  DL +MY LF 
Sbjct: 217 GDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQK---GLDHLLDENRVPDLAQMYQLFS 273

Query: 238 RVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDK 297
           RV  G   + +  + +++  G  +V +PE+ KD    VQ LLD KDK D++I   F  ++
Sbjct: 274 RVRGGQQALLQHWSEYIKTFGTAIVINPEKDKD---MVQDLLDFKDKVDHVIEVCFQKNE 330

Query: 298 TFQNALNSSFEYFIN 312
            F N +  SFE FIN
Sbjct: 331 RFVNLMKESFETFIN 345
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 394 Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 276 Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Length = 273 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d2hyec2347 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1ldja2394 Cullin homolog 1, Cul-1 {Human (Homo sapiens) [Tax 100.0
d1ldja3276 Cullin homolog 1, cul-1 {Human (Homo sapiens) [Tax 100.0
d2hyec3273 Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d2hyec2 a.118.17.1 (C:55-401) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cullin repeat-like
family: Cullin repeat
domain: Cullin-4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.3e-51  Score=422.44  Aligned_cols=305  Identities=33%  Similarity=0.633  Sum_probs=287.5

Q ss_pred             CCCCcchHHHHHHHHHHHHHHHHHHHHHH-Hhh-cchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccCC-CCccHHH
Q 008667            1 MVLHKFGEKLYSGLVSTMTLHLKEISKSI-EAA-QGGSFLEELNRKWNDHNKALQMIRDILMYMDRTYIPST-HKTPVHE   77 (557)
Q Consensus         1 lc~~k~~e~LY~~l~~~i~~~l~~i~~~l-~~~-~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~-~~~~i~~   77 (557)
                      ||++++|++||+++++.+++|+...+..+ .+. +++++|+.+.+.|.+|+.++.+|+++|+||||+|+.++ +.|+|++
T Consensus        39 lc~~~~~~~LY~~l~~~l~~~~~~~~~~~~~~~~~~~~~L~~~~~~W~~~~~~~~~l~~if~YLdr~yv~~~~~~~~i~~  118 (347)
T d2hyec2          39 LCSHKVSPMLYKQLRQACEDHVQAQILPFREDSLDSVLFLKKINTCWQDHCRQMIMIRSIFLFLDRTYVLQNSTLPSIWD  118 (347)
T ss_dssp             HCCTTTHHHHHHHHHHHHHHHHHHHHHHHTSCCCCTTHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTTSCSSSCCHHH
T ss_pred             HHccCcHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhcCCCCCcHHH
Confidence            59999999999999999999999855444 322 34679999999999999999999999999999999875 4689999


Q ss_pred             HHHHHHHHHhccccchHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhCcccchhhchhhHHHHHHHHHHHHHHHh
Q 008667           78 LGLNLWRDNIVRSNKIQTRLLNTLLELVHRERTGEVINRGLMRNIIKMLMDLGPSVYQEDFEKPFLEVSAEFYKVESQKF  157 (557)
Q Consensus        78 l~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~~~~~~lk~ii~~l~~lg~~~Y~~~FE~~~L~~t~~yY~~~~~~~  157 (557)
                      +|+.+|+++|+.++.+.++++++++++|+++|.|+.+|+.+++++++|+..++  +|.+.||++||++|.+||+.++.+|
T Consensus       119 ~~l~lf~~~v~~~~~~~~~l~~~ll~~I~~~R~g~~i~~~ll~~~~~~~~~l~--~Y~~~fE~~~l~~t~~yY~~~~~~~  196 (347)
T d2hyec2         119 MGLELFRTHIISDKMVQSKTIDGILLLIERERSGEAVDRSLLRSLLGMLSDLQ--VYKDSFELKFLEETNCLYAAEGQRL  196 (347)
T ss_dssp             HHHHHHHHTTTSSSTTHHHHHHHHHHHHHTTTTTCCCCHHHHHHHHHHHHHTT--CHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhhhhh--HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999877899999999999999999999999999999999999996  8999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHHHHHHHhhhcCcchHHHHHHHHHHHHHhhhhhHHHhcCchhhHHhhcCCcHHHHHHHHHhhc
Q 008667          158 IECCDCGEYLKKAERRLNEEMERVTHYLDAKSEAKITNVVEKEMIANHMPRLVHMDNSGLVNMLLDDKYEDLGRMYNLFR  237 (557)
Q Consensus       158 ~~~~~~~~Yl~~~~~~l~~E~~r~~~~l~~~t~~~l~~~~~~~Li~~~~~~il~~~~~~~~~ll~~~~~~~L~~ly~L~~  237 (557)
                      +++.++++|+++|+.++++|.+||+.|++++|.++|.++|+++||.+|.+.++.   +|+..|+++++.++|++||+|++
T Consensus       197 l~~~~~~~Yl~~v~~~l~eE~~r~~~~l~~~t~~~l~~~l~~~Li~~~~~~il~---~~~~~ll~~~~~~~L~~ly~L~~  273 (347)
T d2hyec2         197 MQEREVPEYLNHVSKRLEEEGDRVITYLDHSTQKPLIACVEKQLLGEHLTAILQ---KGLDHLLDENRVPDLAQMYQLFS  273 (347)
T ss_dssp             HHHSCHHHHHHHHHHHHHHTHHHHTTTSCTTTHHHHHHHHHHHHTTTCSHHHHH---TTHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhcccHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999985   58999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHHHHhhHhhcCcccCCCcHHHHHHHHHHHHHHHHHHHhhcCCCHHhHHHHHHHHHHhhcc
Q 008667          238 RVPSGLLTIREVMTSHLRETGKQLVTDPERLKDPVEFVQRLLDEKDKYDNIISSAFNNDKTFQNALNSSFEYFINL  313 (557)
Q Consensus       238 ~~~~~~~~l~~~~~~~i~~~g~~~~~~~~~~~~~~~~I~~ll~l~~~~~~li~~~F~~~~~f~~~i~~af~~~ln~  313 (557)
                      +++++++.+++.|++||++.|.+++.+...   +.+||+.|+++|++++.++..||++|+.|.+++++||+.|+|+
T Consensus       274 r~~~~~~~l~~~f~~~i~~~G~~~v~~~~~---~~~~V~~ll~l~~k~~~li~~~F~~d~~f~~~l~~af~~~iNk  346 (347)
T d2hyec2         274 RVRGGQQALLQHWSEYIKTFGTAIVINPEK---DKDMVQDLLDFKDKVDHVIEVCFQKNERFVNLMKESFETFINK  346 (347)
T ss_dssp             HSTTHHHHHHHHHHHHHHHHHHHHHSCGGG---TTTHHHHHHHHHHHHHHHHHTTTTTCHHHHHHHHHHHHHHHTT
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHHhCccc---chHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHccC
Confidence            999999999999999999999999976543   4789999999999999999999999999999999999999996
>d1ldja2 a.118.17.1 (A:17-410) Cullin homolog 1, Cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure