Citrus Sinensis ID: 008689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
Protein Sequence
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSDLDCGG
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEccccccccEEEEEcccccHHHHHHHHHccccccEEEEEEcccccccccccccccccccEEEEEEEEEcccccccccccccEEEEEEEccccccccccccEEEEEEEEEEcccEEEEccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHcccEEEEcccccEEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEEEcccccccHHHHHHHHccccccEEEEEEccccccccccccccccccccccEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEcccccccccccEEcHHHcEEEEEEccccccccccccEEEEEEEEEEccccEEEEcccccccEEEEcccccccHHHHHHHHHcccccEEEEEEcHHHccccccEcccEcccccEEEEEEEEEccccccccccccEEEEEEEccccccccccccEEEEEEEEEEccccEEcccccEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccEEEEEEEEEEEcccccccccccEEEEEEEccccccccccccEEEEEEEEEcccccEEEcccccccccEEEEEEccccccHHHHHHHHHcccccEEEEEEccccccccccccccccccccccEEEEEEEEEEccccccccEEccccccHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mdedfdipaanemdadmdlpddapmmkvgeekeignQGLKKKLVkegegwdtpengdevevhytgtlldgtqfdssrdrstpfkftlgqgnvikgWDIGIKTmkkgenavftippelaygesgspptippnatlqfDVELLSWTSVKDICKDGGIIKKILKegekwenpkdlDEVLVNYEARLEdgmvvgkadgveftvkdghfcPTLAKAVKTMKKGEKVLLAVkpqygfgekgksasgnegavppnaTLQIALELVSWKTVSEITDDKKVIKKILKegdgferpnegaVVKVKLIGklqdgtvfvkkgHSEEEqlfefktdeeQVIDGLDRAVITMKKNEVALLTIapeyafgsaesqqelavvppnstvHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKaleidpdnrdVKLEYKTLKEKMKEYNKKEAKFYGNMfakmntgsdldcgg
Flexible Loop (DISEMBL)
mdedfdipaanemdadmdlpDDAPMMKVGeekeignqglkkKLVKEgegwdtpengdEVEVHYTGTLLDGTQFDSSRDRSTpfkftlgqgnvikGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIlkegekwenpkdlDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKtvseitddkkVIKKIlkegdgferpnegavVKVKLIGKLQDGTVFVKKGHSEEeqlfefktdeeqVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSfekekeswdmNTEEKIeaagkkkeqgntlfkagkyaraskrYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCtkvldldsrnVKALYRRAQAYIQMADLDLAEFDIKKaleidpdnrdvKLEYKTLKEKMKEYNKKEAKfygnmfakmntgsdldcgg
Low Complexity Region (SEG)
MDEDFDIPAANEmdadmdlpddapmmKVGEEKEIGNQglkkklvkegegWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVkdickdggiikkilkegekWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTeekieaagkkkeQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSDLDCGG
Disordered region (IsUnstruct)
**********************************************************VEVHYTGTLLDGT**********PFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY***********NATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF*****************ATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA****ELAVVPPNSTVHYEVELVSF****************************FKAGKYARASKRYEKAVKYIEYDTSFGD****QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT**************FYGNM**************
Disordered Region (DISOPRED)
****FDI*************************EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEK**********VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ****VVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS******KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF*************
Disordered Region (DISEMBL)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGE*********GAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSDLDCGG
Disordered Region (DISPRO)
*********ANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDxxxxxxxxxxxxxxxxxxxxxEAKFYGNMFAKMNTGSDLDCGG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	557	2.2.26 [Sep-21-2011]
Q38931	551	Peptidyl-prolyl cis-trans	yes	no	0.982	0.992	0.821	0.0
Q9FJL3	578	Peptidyl-prolyl cis-trans	no	no	0.955	0.920	0.799	0.0
Q43207	559	70 kDa peptidyl-prolyl is	N/A	no	0.985	0.982	0.789	0.0
Q9TRY0	459	Peptidyl-prolyl cis-trans	yes	no	0.684	0.830	0.374	5e-68
Q02790	459	Peptidyl-prolyl cis-trans	yes	no	0.684	0.830	0.364	8e-68
P30416	458	Peptidyl-prolyl cis-trans	yes	no	0.684	0.831	0.362	2e-65
Q9QVC8	458	Peptidyl-prolyl cis-trans	yes	no	0.684	0.831	0.359	4e-65
P27124	458	Peptidyl-prolyl cis-trans	yes	no	0.684	0.831	0.369	5e-63
Q64378	456	Peptidyl-prolyl cis-trans	no	no	0.687	0.839	0.358	6e-62
Q9XSI2	457	Peptidyl-prolyl cis-trans	N/A	no	0.687	0.838	0.353	2e-60

>sp|Q38931|FKB62_ARATH Peptidyl-prolyl cis-trans isomerase FKBP62 OS=Arabidopsis thaliana GN=FKBP62 PE=1 SV=2

 Score =  908 bits (2347), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/550 (82%), Positives = 500/550 (90%), Gaps = 3/550 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct: 480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query: 539 FYGNMFAKMN 548
           FYGNMFAK++
Sbjct: 540 FYGNMFAKLS 549

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (By similarity). Co-chaperone that positively modulates thermotolerance by interacting with HSP90.1 and increasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family.
Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 2EC: .EC: 1EC: .EC: 8

>sp|Q9FJL3|FKB65_ARATH Peptidyl-prolyl cis-trans isomerase FKBP65 OS=Arabidopsis thaliana GN=FKBP65 PE=1 SV=1

 Score =  882 bits (2280), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/534 (79%), Positives = 487/534 (91%), Gaps = 2/534 (0%)

Query: 16  DMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDS 75
           D D  D AP +K+GEE EIG  GLKKKLVKE E WDTPENGDEVEVHYTGTLLDGT+FDS
Sbjct: 25  DNDEADSAPYLKIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDS 84

Query: 76  SRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQ 135
           SRDR TPFKFTLGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQ
Sbjct: 85  SRDRGTPFKFTLGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQ 144

Query: 136 FDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGV 195
           FDVEL++W SVKDIC DGG+ KKI+ EGEKWE PKDLDEV V YEARLEDG +VGK+DGV
Sbjct: 145 FDVELIAWRSVKDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGV 204

Query: 196 EFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIA 254
           EFTVK+GHFCP L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI 
Sbjct: 205 EFTVKEGHFCPALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQID 264

Query: 255 LELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSE 313
           LELVSWKTV E+TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E
Sbjct: 265 LELVSWKTVVEVTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEE 324

Query: 314 EEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVH 373
           +E+ FEFK DEEQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+
Sbjct: 325 DEEPFEFKIDEEQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVY 384

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           YEVELVSF KEKESWDMNT+E+IEAAGKKKE+GN LFKAGKYARASKRYE+ VKYIEYD+
Sbjct: 385 YEVELVSFIKEKESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDS 444

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +F +EEKK++K LK+ACNLN+AACKLKLKDYK+A KL TKVL++DSRNVKA+YRRA AY+
Sbjct: 445 TFDEEEKKKSKDLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYL 504

Query: 494 QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           + ADLDLAE DIKKALEIDPDN++VK+EYK LKEK+KEYNKK+AKFY NM +KM
Sbjct: 505 ETADLDLAELDIKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM 558

PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides. Co-chaperone that negatively modulates thermotolerance by interacting with FKBP62 and decreasing the HSFA2-mediated accumulation of chaperones of the small-HSPs family. Plays a positive role in tolerance to intracellular acid stress by maintaining the pH homeostasis.

Arabidopsis thaliana (taxid: 3702)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q43207|FKB70_WHEAT 70 kDa peptidyl-prolyl isomerase OS=Triticum aestivum GN=FKBP70 PE=1 SV=1

 Score =  825 bits (2130), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 438/555 (78%), Positives = 485/555 (87%), Gaps = 6/555 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPD----DAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           MD+DFDIPA ++M     + D    + P MKVGEE EIG QGLKKKL+KEGEGWDTPE G
Sbjct: 1   MDDDFDIPAGDDMMMGDGMGDFGGAEGPGMKVGEENEIGKQGLKKKLLKEGEGWDTPEVG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDG +FDSSRDR   FKF LGQG VIKGWD GIKTMKKGENA+FTIPPE
Sbjct: 61  DEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENALFTIPPE 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYGESGSPPTIP NATLQFDVELLSWTSV+DI KDGGI KKILKEG+KWENPKD DEV 
Sbjct: 121 LAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVF 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEARLEDG VV K++GVEFTVKDGH CP LAKAVKTMKKGEKVLLAVKPQYGFGE G+
Sbjct: 181 VKYEARLEDGTVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGR 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            A+G  GAVPPNA+L I LELVSWKTV+EI DDKK++KK+LKE +G+ERPNEGAVV VK+
Sbjct: 241 PAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKI 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
            GKLQDGTVF+KKGH E+E  FEFKTDEE VI+GLDRAV+ MKK EVAL+TI PEYA+GS
Sbjct: 301 TGKLQDGTVFLKKGHDEQEP-FEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
            ES+Q+ A+VPPNSTV YEVELVSF K+KESWD+N  EKIEAAG KKE+GN LFK+GKYA
Sbjct: 360 TESKQD-AIVPPNSTVIYEVELVSFVKDKESWDLNNSEKIEAAGTKKEEGNALFKSGKYA 418

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476
           RASKRYEKA K+IEYDTSF ++EKKQ+K LK+ CNLNNAACKLKLKDYKQAEKLCTKVL+
Sbjct: 419 RASKRYEKAAKFIEYDTSFSEDEKKQSKQLKITCNLNNAACKLKLKDYKQAEKLCTKVLE 478

Query: 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
           LDSRNVKALYRRAQAY Q+ADL+LAE DIKKALEIDP+NRDVKL YKTLKEK+KE NKK+
Sbjct: 479 LDSRNVKALYRRAQAYTQLADLELAEVDIKKALEIDPENRDVKLTYKTLKEKIKEINKKD 538

Query: 537 AKFYGNMFAKMNTGS 551
           AKFY NMF+KM   S
Sbjct: 539 AKFYSNMFSKMTKPS 553

PPIases accelerate the folding of proteins during protein synthesis.

Triticum aestivum (taxid: 4565)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9TRY0|FKBP4_BOVIN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Bos taurus GN=FKBP4 PE=1 SV=4

 Score =  259 bits (661), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 152/406 (37%), Positives = 241/406 (59%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----LAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D  VF ++          F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYAKPNEGALVEVALEGYFKD-QVFDRRE-------LRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SF
Sbjct: 195 GESMDLPCGLEKAIQRMEKGEHSIVYLKPRYAFGSA--GKEKFQIPPNAELKYEIHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF DE+ +
Sbjct: 253 EKAKESWEMSSEEKLEQSTIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAE 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    ++++++  +KE K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKAQLVVCQQRIRKQLEKEKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Bos taurus (taxid: 9913)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q02790|FKBP4_HUMAN Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Homo sapiens GN=FKBP4 PE=1 SV=3

 Score =  258 bits (659), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 148/406 (36%), Positives = 239/406 (58%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               A+ TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAIATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SF
Sbjct: 195 GENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE +
Sbjct: 253 EKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D +LA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P+N+  K +    +++++    +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening. Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Homo sapiens (taxid: 9606)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P30416|FKBP4_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Mus musculus GN=Fkbp4 PE=1 SV=5

 Score =  250 bits (638), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 147/406 (36%), Positives = 232/406 (57%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     A+G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----AAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TD--DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+  D  +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TEEEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYHKDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVRLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++ EK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSAEKLEQSNIVKERGTAYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +  AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    +++ +    +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9QVC8|FKBP4_RAT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Rattus norvegicus GN=Fkbp4 PE=1 SV=3

 Score =  249 bits (636), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 146/406 (35%), Positives = 231/406 (56%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E     D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETAMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGEVCHITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           T+D+   +I++I   G+G+ RPN+GA+V+V L G   D           +++   F+  E
Sbjct: 143 TEDEDGGIIRRIRTRGEGYARPNDGAMVEVALEGYYNDRLF--------DQRELCFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL+ A+  M+K E +++ + P YAFGS    +E   +PP++ + YEV L SF
Sbjct: 195 GESLDLPCGLEEAIQRMEKGEHSIVYLKPSYAFGSV--GKERFQIPPHAELRYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK K SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKASWEMNSEEKLEQSNIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSGEEMQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +  AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KVHALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    +++ +    +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKTQLAVCQQRTRRQLAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities (By similarity). Component of unligated steroid receptors heterocomplexes through interaction with heat-shock protein 90 (HSP90) (By similarity). Plays a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly. The PPIase activity controls neuronal growth cones via regulation of TRPC1 channel opening.

Rattus norvegicus (taxid: 10116)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|P27124|FKBP4_RABIT Peptidyl-prolyl cis-trans isomerase FKBP4 OS=Oryctolagus cuniculus GN=FKBP4 PE=1 SV=3

 Score =  242 bits (618), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 150/406 (36%), Positives = 239/406 (58%), Gaps = 25/406 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG      + + D   F +  G    
Sbjct: 29  QDEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
               AV TMK GE   +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++
Sbjct: 89  AWDIAVATMKVGELCRITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDL 142

Query: 267 TDDKK--VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           TDD+   +I++I   G+G+ RPN+GA+V+V L G  +D           +++   F+  E
Sbjct: 143 TDDEDGGIIRRIRTRGEGYARPNDGAIVEVALEGYYKDRLF--------DQRELRFEVGE 194

Query: 325 EQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +D   GL++A+  M+K E ++L + P YAFG+A   +E   +PP + + YEV L SF
Sbjct: 195 GESLDLPCGLEKAIQRMEKGEHSILYLKPSYAFGNA--GKEKFQIPPYAELKYEVHLKSF 252

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M++EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF  EE +
Sbjct: 253 EKAKESWEMSSEEKLEQSAIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSSEEVQ 312

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
           +A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D DLA
Sbjct: 313 KAQALRLASHLNLAMCHLKLQAFSAAVESCNKALELDSNNEKGLFRRGEAHLAVNDFDLA 372

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             D +K L++ P N+  K +    ++++++   +E K Y NMF ++
Sbjct: 373 RADFQKVLQLYPSNKAAKAQLAVCQQRIRKQIAREKKLYANMFERL 418

Immunophilin protein with PPIase and co-chaperone activities. Component of unligated steroid receptors heterocomplexes thought interaction with heat-shock protein 90 (HSP90) (By similarity). May play a role in the intracellular trafficking of heterooligomeric forms of steroid hormone receptors between cytoplasm and nuclear compartments. The isomerase activity controls neuronal growth cones via regulation of TRPC1 channel opening (By similarity). Acts also as a regulator of microtubule dynamics by inhibiting MAPT/TAU ability to promote microtubule assembly.

Oryctolagus cuniculus (taxid: 9986)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q64378|FKBP5_MOUSE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Mus musculus GN=Fkbp5 PE=1 SV=1

 Score =  239 bits (609), Expect = 6e-62,   Method: Compositional matrix adjust.
 Identities = 144/402 (35%), Positives = 224/402 (55%), Gaps = 19/402 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+  L DG     +        F++  G    
Sbjct: 29  KDRGVLKIVKRVGTSDEAPMFGDKVYVHYKGMLSDGKKFDSSHDRKKPFAFSLGQGQVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TMKKGE   L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----SAGHLQKIPSNATLFFEIELLDFKG-EDL 142

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  VI++I ++G+G+  PNEGA VKV L G     T   +      + +F     E+ 
Sbjct: 143 FEDSGVIRRIKRKGEGYSNPNEGATVKVHLEGCCGGRTFDCR------DVVFVVGEGEDH 196

Query: 327 VID-GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
            I  G+D+A++ M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK K
Sbjct: 197 DIPIGIDKALVKMQREEQCILYLGPRYGFG--EAGKPKFGIDPNAELMYEVTLKSFEKAK 254

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           ESW+M+T+EK+  A   KE+G   FK GKY +A  +Y K V ++E +    ++E K +++
Sbjct: 255 ESWEMDTKEKLTQAAIVKEKGTVYFKGGKYTQAVIQYRKIVSWLEMEYGLSEKESKASES 314

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M D + A+ D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYNKAVECCDKALGLDSANEKGLYRRGEAQLLMNDFESAKGDF 374

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           +K L ++P NR  +L+    + K KE+N+++ + Y NMF K 
Sbjct: 375 EKVLAVNPQNRAARLQISMCQRKAKEHNERDRRVYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP.

Mus musculus (taxid: 10090)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

>sp|Q9XSI2|FKBP5_SAGOE Peptidyl-prolyl cis-trans isomerase FKBP5 OS=Saguinus oedipus GN=FKBP5 PE=2 SV=2

 Score =  234 bits (596), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 142/402 (35%), Positives = 228/402 (56%), Gaps = 19/402 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y  +L +G     +    +   F++  G    
Sbjct: 29  KDRGVLKIVKRVGHGEETPMIGDKVYVHYNGKLSNGKKFDSSHDRNEPFVFSIGKGQVIK 88

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TMKKGE   L  KP+Y +G     A+G+   +P NATL   +EL+++K   ++
Sbjct: 89  AWDIGVSTMKKGEICHLLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLNFKG-EDL 142

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++  + G+G+  PNEGA V++ L G+   G VF  +     +  F     E+ 
Sbjct: 143 LEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDH 196

Query: 327 VID-GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
            I  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK K
Sbjct: 197 DIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAK 254

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           ESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K +++
Sbjct: 255 ESWEMDTKEKLEQAAIVKEEGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASES 314

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A+ D 
Sbjct: 315 FLLAAFLNLAMCYLKLREYAKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDF 374

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K 
Sbjct: 375 EKVLEVNPQNKAARLQIVVCQKKAKEHNERDRRIYANMFKKF 416

Interacts with functionally mature heterooligomeric progesterone receptor complexes along with HSP90 and TEBP (By similarity). Interacts with the glucocorticoid receptor and modulates its response to glucocorticoids.

Saguinus oedipus (taxid: 9490)

EC: 5

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
359497288	571	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.983	0.959	0.870	0.0
255589766	574	peptidylprolyl isomerase, putative [Rici	0.996	0.966	0.852	0.0
224065421	575	predicted protein [Populus trichocarpa]	0.992	0.961	0.853	0.0
255587695	583	peptidylprolyl isomerase, putative [Rici	0.994	0.950	0.854	0.0
355329948	573	FK506-binding protein [Nicotiana tabacum	0.982	0.954	0.852	0.0
356527318	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.969	0.992	0.828	0.0
449463204	553	PREDICTED: peptidyl-prolyl cis-trans iso	0.982	0.989	0.839	0.0
356567794	544	PREDICTED: 70 kDa peptidyl-prolyl isomer	0.969	0.992	0.819	0.0
297831424	551	peptidylprolyl isomerase [Arabidopsis ly	0.982	0.992	0.826	0.0
9294180	555	peptidylprolyl isomerase; FK506-binding	0.983	0.987	0.820	0.0

>gi|359497288|ref|XP_002263566.2| PREDICTED: 70 kDa peptidyl-prolyl isomerase [Vitis vinifera] gi|296085741|emb|CBI29552.3| unnamed protein product [Vitis vinifera]

 Score =  982 bits (2538), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 477/548 (87%), Positives = 513/548 (93%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA EM+ DMDLPD++P++KVGEEKEIG QGLKKKLVKEGEGWDTPENGDEVE
Sbjct: 1   MDEDFDIPAAEEMNDDMDLPDESPILKVGEEKEIGKQGLKKKLVKEGEGWDTPENGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGS  TIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKDLDEV V YE
Sbjct: 121 ESGSSTTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDLDEVFVKYE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           ARLEDG +V K+DGVEFTVK+ +FCP L+KAVKTMKKGEKV+L VKPQYGFGEKGK ASG
Sbjct: 181 ARLEDGTLVAKSDGVEFTVKEDYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPASG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            EGAVPPNATL+I LELVSWKTV+E+TDDKKVIKKILKEG+G+ERPNEGAVVK+KLIGKL
Sbjct: 241 EEGAVPPNATLEITLELVSWKTVTEVTDDKKVIKKILKEGEGYERPNEGAVVKLKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E LFEFKTD+EQVIDGLDRAV+TMKK EVALLTI  +YAFGS+ES 
Sbjct: 301 QDGTVFLKKGHGEGEDLFEFKTDDEQVIDGLDRAVMTMKKGEVALLTIHSDYAFGSSESS 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV+YEVEL SF K+KESWDMNTEEKIEAAGKKKE+GN LFKAGKYARASK
Sbjct: 361 QELAVVPPNSTVYYEVELESFVKDKESWDMNTEEKIEAAGKKKEEGNVLFKAGKYARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKA KYIEYD+SFG+EEKKQAK LKV CNLNNAACKLKLKDYK+AEKLCTKVLD+ S+
Sbjct: 421 RYEKAAKYIEYDSSFGEEEKKQAKTLKVTCNLNNAACKLKLKDYKEAEKLCTKVLDIQSK 480

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAYI +ADLDLAEFDIKKALEIDPDNRDVKLEY+TLKEKMKEYNKKEAKFY
Sbjct: 481 NVKALYRRAQAYIHLADLDLAEFDIKKALEIDPDNRDVKLEYRTLKEKMKEYNKKEAKFY 540

Query: 541 GNMFAKMN 548
           GNMFA+MN
Sbjct: 541 GNMFARMN 548

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255589766|ref|XP_002535081.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223524081|gb|EEF27302.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  976 bits (2523), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/557 (85%), Positives = 520/557 (93%), Gaps = 2/557 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKVLDL+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVLDLE 480

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEI+PDNRDVKLEY+TLK+KM+E NKKEAK
Sbjct: 481 SRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNRDVKLEYRTLKDKMRELNKKEAK 540

Query: 539 FYGNMFAKMNTGSDLDC 555
           FYGNMFAKMN    LD 
Sbjct: 541 FYGNMFAKMNKLGPLDS 557

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065421|ref|XP_002301809.1| predicted protein [Populus trichocarpa] gi|222843535|gb|EEE81082.1| predicted protein [Populus trichocarpa]

 Score =  976 bits (2522), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 476/558 (85%), Positives = 519/558 (93%), Gaps = 5/558 (0%)

Query: 1   MDEDFDIPAANEMDAD----MDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENG 56
           M+EDF++P  +EM  +    +DLPD+ PM+KVGEEKEIGNQGLKKKL+KEGEGWDTP+NG
Sbjct: 1   MEEDFELPTGDEMMMNNGDQLDLPDEGPMLKVGEEKEIGNQGLKKKLLKEGEGWDTPDNG 60

Query: 57  DEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE 116
           DEVEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKKGENA+FTIP +
Sbjct: 61  DEVEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKGENALFTIPAD 120

Query: 117 LAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVL 176
           LAYG SGSPPTIPPNATLQFDVELLSW+S+KDICKDGGI KKIL EGEKWENPKDLDEVL
Sbjct: 121 LAYGSSGSPPTIPPNATLQFDVELLSWSSIKDICKDGGIFKKILVEGEKWENPKDLDEVL 180

Query: 177 VNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK 236
           V YEA+LEDG V+ ++DGVEFTVKDGHFCP LA+AVKTMK GEKVLL VKPQYGFGEKGK
Sbjct: 181 VRYEAQLEDGSVIARSDGVEFTVKDGHFCPALARAVKTMKMGEKVLLTVKPQYGFGEKGK 240

Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
            ASG+E AVPPNA +QI LELV+WKTV+E+TDDKKVIKKILKEGDG++RPNEGAVVKVKL
Sbjct: 241 PASGDESAVPPNANIQITLELVAWKTVTEVTDDKKVIKKILKEGDGYDRPNEGAVVKVKL 300

Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
           IGKLQDGTVF KKG  + E LFEFKTDEEQVIDGLDRAV TMKK E+ALLTIAPEYAFGS
Sbjct: 301 IGKLQDGTVFFKKGQDDSE-LFEFKTDEEQVIDGLDRAVSTMKKGELALLTIAPEYAFGS 359

Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYA 416
           +ESQQELAVVPPNSTV YE+ELVSF+KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYA
Sbjct: 360 SESQQELAVVPPNSTVCYEIELVSFDKEKESWDMNTDEKIEAAGKKKEEGNVLFKAGKYA 419

Query: 417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD 476
           +ASKRYEKAVKYIEYD+SF +EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL+
Sbjct: 420 KASKRYEKAVKYIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLE 479

Query: 477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
           L+SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEIDPDNRDVKLE+KTLKEKMKEYNKKE
Sbjct: 480 LESRNVKALYRRAQAYIQLADLDLAEFDIKKALEIDPDNRDVKLEHKTLKEKMKEYNKKE 539

Query: 537 AKFYGNMFAKMNTGSDLD 554
           AKFYGNMFAKM+    L+
Sbjct: 540 AKFYGNMFAKMSKVGSLE 557

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587695|ref|XP_002534361.1| peptidylprolyl isomerase, putative [Ricinus communis] gi|223525436|gb|EEF28026.1| peptidylprolyl isomerase, putative [Ricinus communis]

 Score =  973 bits (2514), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/556 (85%), Positives = 520/556 (93%), Gaps = 2/556 (0%)

Query: 1   MDEDFDIPAANEM--DADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           M+EDFDIPA +EM  + D+DL D +P++KVGEEKEIG QGLKKKLVKEGEGWDTP+NGDE
Sbjct: 1   MEEDFDIPAGDEMMMNDDVDLGDQSPILKVGEEKEIGKQGLKKKLVKEGEGWDTPDNGDE 60

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELA
Sbjct: 61  VEVHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELA 120

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YG SGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKIL EGEKWENPKDLDEVLVN
Sbjct: 121 YGASGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILVEGEKWENPKDLDEVLVN 180

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VV K+DGVEF VK+GHFCP LAKAVKTMKK EKVLL VKPQYGFGEKGK A
Sbjct: 181 FEAQLEDGTVVAKSDGVEFAVKEGHFCPALAKAVKTMKKKEKVLLTVKPQYGFGEKGKPA 240

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATLQI LELVSWKTVSE+TDDKKV+KKILKEG+G+ERPN+G++VK+KLIG
Sbjct: 241 SNGEGAVPPNATLQITLELVSWKTVSEVTDDKKVMKKILKEGEGYERPNDGSLVKLKLIG 300

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH  EE+LFEF TDEEQVI+GLDRAV+ MKK EVAL+TIAPEYAFG++E
Sbjct: 301 KLQDGTVFLKKGHDNEEELFEFTTDEEQVIEGLDRAVLAMKKGEVALVTIAPEYAFGASE 360

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+QELAV+PPNSTV+YEVELVSF KEKESWDMNT+EKIEAAGKKKE+GN LFKAGKYARA
Sbjct: 361 SKQELAVIPPNSTVYYEVELVSFVKEKESWDMNTQEKIEAAGKKKEEGNILFKAGKYARA 420

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKL+LK+YK+AEKLCTKVLDL+
Sbjct: 421 SKRYEKAVKHIEYDSSFSEEEKKQAKALKVACNLNNAACKLRLKEYKEAEKLCTKVLDLE 480

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           SRNVKALYRRAQAYIQ+ADLDLAEFDIKKALEI+PDNRDVKLEY+TLK+KM+E NKKEAK
Sbjct: 481 SRNVKALYRRAQAYIQLADLDLAEFDIKKALEIEPDNRDVKLEYRTLKDKMRELNKKEAK 540

Query: 539 FYGNMFAKMNTGSDLD 554
           FYGNMFAKMN    LD
Sbjct: 541 FYGNMFAKMNKLGPLD 556

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|355329948|dbj|BAL14273.1| FK506-binding protein [Nicotiana tabacum]

 Score =  956 bits (2472), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/550 (85%), Positives = 509/550 (92%), Gaps = 3/550 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP A  MD DMDLPDD P+MKVGEEKEIGNQGLKKKLVKEGEGW+TPE GDEVE
Sbjct: 1   MEEDFDIPPAEGMDEDMDLPDD-PIMKVGEEKEIGNQGLKKKLVKEGEGWETPEAGDEVE 59

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR  PFKFTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 60  VHYTGTLLDGTKFDSSRDRGDPFKFTLGQGQVIKGWDQGIKTMKKGENAIFTIPPELAYG 119

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSW SVKDICKDGGI KKIL EGEKWENPKD DEVLV YE
Sbjct: 120 ESGSPPTIPPNATLQFDVELLSWVSVKDICKDGGIFKKILAEGEKWENPKDFDEVLVKYE 179

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A LE+G VVGK+DGVEFTV+DG+FCP LAKAVKTMKKGEKV L VKPQYGFGEKGK AS 
Sbjct: 180 ALLENGTVVGKSDGVEFTVQDGYFCPALAKAVKTMKKGEKVQLTVKPQYGFGEKGKPASS 239

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           + GAVP NATLQI LELVSWK VS +TDDKKV+KKILKEG+G+E+PNEGAVVK+KLIGKL
Sbjct: 240 DGGAVPSNATLQINLELVSWKIVSSVTDDKKVVKKILKEGEGYEKPNEGAVVKLKLIGKL 299

Query: 301 QDGTVFVKKGHS--EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           QDGTVF+KKGH    E++LFEFKTDEEQVIDGLDRAV+TMKK EVALLTIAPEYAFGS+E
Sbjct: 300 QDGTVFIKKGHDGENEDELFEFKTDEEQVIDGLDRAVMTMKKGEVALLTIAPEYAFGSSE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           S+Q+LAV+PPNSTVHYEVELVSF K+KESWDMNT EKIEAAGKKKE+GN LFKAGKY RA
Sbjct: 360 SKQDLAVIPPNSTVHYEVELVSFVKDKESWDMNTPEKIEAAGKKKEEGNALFKAGKYTRA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKA K+IEYDTSF +EEKKQ+KALK++CNLNNAACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAAKFIEYDTSFSEEEKKQSKALKISCNLNNAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY+ MADLDLAEFDIKKALEIDP+NRDVKLEYK LK+K+KE+NKK+AK
Sbjct: 480 STNVKALYRRAQAYMNMADLDLAEFDIKKALEIDPNNRDVKLEYKALKDKVKEFNKKDAK 539

Query: 539 FYGNMFAKMN 548
           FYGNMFAK+N
Sbjct: 540 FYGNMFAKLN 549

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527318|ref|XP_003532258.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/548 (82%), Positives = 501/548 (91%), Gaps = 8/548 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        KVGEE+EIG++GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------KVGEEREIGSRGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EG+KWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIVTEGDKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G +V K+DGVEFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDG  F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAPEYAFGS+ESQ
Sbjct: 293 QDGAAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKAGK+ARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKAGKHARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKVLDL+S 
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLEST 472

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAY+Q+ DLDLAE DIKKALEIDP+NRDVKLEY+TLKEK+K  N+KEA+FY
Sbjct: 473 NVKALYRRAQAYMQLTDLDLAELDIKKALEIDPNNRDVKLEYRTLKEKVKANNRKEAQFY 532

Query: 541 GNMFAKMN 548
           GNM  KM 
Sbjct: 533 GNMINKMT 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463204|ref|XP_004149324.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus] gi|449515125|ref|XP_004164600.1| PREDICTED: peptidyl-prolyl cis-trans isomerase FKBP62-like [Cucumis sativus]

 Score =  931 bits (2406), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/547 (83%), Positives = 510/547 (93%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MDEDFDIPAA +M  D+DLPD    +KVGEEKEIGNQGLKKKL+KEGEGW TPE+GDEVE
Sbjct: 1   MDEDFDIPAAPDMPDDLDLPDQTVPLKVGEEKEIGNQGLKKKLLKEGEGWVTPESGDEVE 60

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGTQFDSSRDR TPFKFTLGQG VIKGWD+GIKTMKK E A+FTIPP+LAYG
Sbjct: 61  VHYTGTLLDGTQFDSSRDRGTPFKFTLGQGQVIKGWDLGIKTMKKNEKALFTIPPDLAYG 120

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPP+ATLQFDVELLSWTSVKDICKDGGI KKIL EG+KWENPKDLDEVLVN+E
Sbjct: 121 ESGSPPTIPPSATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDLDEVLVNFE 180

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG ++ KADGVEFTV DG+FCP LAKAVKTMK GEK LL VKPQYGFGEKGKSA G
Sbjct: 181 AKLEDGTLIAKADGVEFTVADGYFCPALAKAVKTMKLGEKALLTVKPQYGFGEKGKSARG 240

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           NEGAVPPNA+L I LELVSWKTVSE+T DKKVIKKILKEG+G+E+PN+GA+VKVKLIGKL
Sbjct: 241 NEGAVPPNASLDITLELVSWKTVSEVTPDKKVIKKILKEGEGYEKPNDGAIVKVKLIGKL 300

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
            DG +F++KGH + E+ +EFKTDEEQVIDGLD+AV+TMKK E+ALLTIAPEYAFGS+ESQ
Sbjct: 301 GDGKIFLRKGHEDGEEPYEFKTDEEQVIDGLDKAVVTMKKGEIALLTIAPEYAFGSSESQ 360

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           Q+LAVVPPNSTV+YEVELV+F+KEKESWDMN +EKIEAAGKKKE+GN LFK+GK+ARASK
Sbjct: 361 QDLAVVPPNSTVYYEVELVAFDKEKESWDMNNQEKIEAAGKKKEEGNVLFKSGKFARASK 420

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVK+IEYD+SF +EEKKQAKALKVACNLNNAACKLKLK Y +AEKLCTKVL+L+S 
Sbjct: 421 RYEKAVKFIEYDSSFSEEEKKQAKALKVACNLNNAACKLKLKLYNEAEKLCTKVLELESS 480

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAYIQ+ADLDLAEFDIKKAL+IDP+NRDVKLEYKTLKEK+KEYNKK+AKFY
Sbjct: 481 NVKALYRRAQAYIQLADLDLAEFDIKKALDIDPNNRDVKLEYKTLKEKVKEYNKKDAKFY 540

Query: 541 GNMFAKM 547
           GNMFAKM
Sbjct: 541 GNMFAKM 547

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567794|ref|XP_003552100.1| PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Glycine max]

 Score =  924 bits (2388), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 449/548 (81%), Positives = 500/548 (91%), Gaps = 8/548 (1%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           M+EDFDIP   EMD   D        +VGEE+EIG+ GLKKKL+KEG+GW+TPE GDEV+
Sbjct: 1   MEEDFDIPGGEEMDLGED--------EVGEEREIGSGGLKKKLLKEGQGWETPEVGDEVQ 52

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR +PF FTLGQG VIKGWD GIKTMKKGENA+FTIPPELAYG
Sbjct: 53  VHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYG 112

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGI KKI+ EGEKWENPKD DEVLV YE
Sbjct: 113 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKIITEGEKWENPKDPDEVLVKYE 172

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
             LE+G ++ K+DG EFTV++GH+CP L+KAVKTMKKGEKVLL VKPQYGFGEKGK   G
Sbjct: 173 VHLENGKLLAKSDGEEFTVREGHYCPALSKAVKTMKKGEKVLLTVKPQYGFGEKGKPEQG 232

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
           +EGAVPPNATLQI LELVSWKTVSE+TDDKKVIKKILKEG+G+ERPNEGA+VKVKLIGKL
Sbjct: 233 DEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKL 292

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGT F+KKGH EEE+LFEFKTDEEQV+DGLDRAV+TMKK EVALLTIAP+YAFG++ESQ
Sbjct: 293 QDGTAFLKKGHDEEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPDYAFGTSESQ 352

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV++EVELVSFEKEKESWD+NTEEK+EAAGKKKE+GN LFKA KYARASK
Sbjct: 353 QELAVVPPNSTVYFEVELVSFEKEKESWDLNTEEKLEAAGKKKEEGNVLFKASKYARASK 412

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVKYIEYD+SFG+EEKKQAK LKVACNLNNAACKLKLKDYK+AEKLCTKVLDL+S 
Sbjct: 413 RYEKAVKYIEYDSSFGEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLDLEST 472

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQA++Q+ +LDLAE DIKKAL+IDP+NRDVKLEY+TLKEK+KE N+KEA+FY
Sbjct: 473 NVKALYRRAQAHMQLTNLDLAELDIKKALDIDPNNRDVKLEYRTLKEKVKENNRKEAQFY 532

Query: 541 GNMFAKMN 548
           GNM  KM 
Sbjct: 533 GNMINKMT 540

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297831424|ref|XP_002883594.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata] gi|297329434|gb|EFH59853.1| peptidylprolyl isomerase [Arabidopsis lyrata subsp. lyrata]

 Score =  920 bits (2379), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/549 (82%), Positives = 500/549 (91%), Gaps = 2/549 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
           MD DF++P   + D +MD  D A  +KVGEEKEI  QGLKKKLVKEGEG++TPENGDEVE
Sbjct: 1   MDNDFEMPPVGD-DDEMDFGDAASFLKVGEEKEI-QQGLKKKLVKEGEGYETPENGDEVE 58

Query: 61  VHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYG 120
           VHYTGTLLDGT+FDSSRDR TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELAYG
Sbjct: 59  VHYTGTLLDGTKFDSSRDRGTPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPSELAYG 118

Query: 121 ESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYE 180
           E+GSPPTIP NATLQFDVELL+W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV +E
Sbjct: 119 ETGSPPTIPANATLQFDVELLTWVSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVKFE 178

Query: 181 ARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASG 240
           A+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK AS 
Sbjct: 179 AKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPASA 238

Query: 241 NEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKL 300
            +GAVPPNATL+I LELVSWKTVSE+TDD KV+KKILKEG+G+ERPNEGA VKVKLIGKL
Sbjct: 239 GDGAVPPNATLEINLELVSWKTVSEVTDDNKVMKKILKEGEGYERPNEGAAVKVKLIGKL 298

Query: 301 QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQ 360
           QDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS ESQ
Sbjct: 299 QDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNESQ 358

Query: 361 QELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASK 420
           QELAVVPPNSTV YEV+L++F+KE+ESWDM+TEEKIEAA KKKE+GN+ FKAGKYA ASK
Sbjct: 359 QELAVVPPNSTVTYEVDLLTFDKERESWDMSTEEKIEAASKKKEEGNSKFKAGKYALASK 418

Query: 421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           RYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+S 
Sbjct: 419 RYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELEST 478

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALYRRAQAY++MADLDLAEFD+KKALEIDP+NR+VKLE + LKEKMKE+NKKEAKFY
Sbjct: 479 NVKALYRRAQAYMEMADLDLAEFDVKKALEIDPNNREVKLEQRRLKEKMKEFNKKEAKFY 538

Query: 541 GNMFAKMNT 549
           GNMFAK+  
Sbjct: 539 GNMFAKLTV 547

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9294180|dbj|BAB02082.1| peptidylprolyl isomerase; FK506-binding protein [Arabidopsis thaliana]

 Score =  909 bits (2348), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/551 (82%), Positives = 500/551 (90%), Gaps = 3/551 (0%)

Query: 1   MDEDFDIPAANEMDADMDLPDD--APMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDE 58
           MD +F++P    M+ D D+     A  +KVGEEKEI  QGLKKKL+KEGEG++TPENGDE
Sbjct: 1   MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query: 59  VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct: 60  VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query: 119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVN 178
           YGESGSPPTIP NATLQFDVELL W SVKDICKDGG+ KKIL  GEKWENPKDLDEVLV 
Sbjct: 120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query: 179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
           +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct: 180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query: 239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
           S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct: 240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query: 299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
           KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct: 300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query: 359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA 418
           SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNTEEKIEAA KKKE+GN+ FK GKY+ A
Sbjct: 360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query: 419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
           SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct: 420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query: 479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
           S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct: 480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query: 539 FYGNMFAKMNT 549
           FYGNMFAK++ 
Sbjct: 540 FYGNMFAKLSV 550

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	557
TAIR|locus:2090265	562	ROF1 "AT3G25230" [Arabidopsis	0.980	0.971	0.748	1.2e-218
TAIR|locus:2152561	578	ROF2 "AT5G48570" [Arabidopsis	0.935	0.901	0.741	1.9e-211
UNIPROTKB|Q7F1F2	580	OJ1191_A10.119 "cDNA clone:J03	0.933	0.896	0.748	2.7e-210
UNIPROTKB|Q9XFE4	585	OSJNBa0091C07.4 "OSJNBa0091C07	0.931	0.887	0.721	1.4e-204
UNIPROTKB|Q6K5Q1	682	P0579G08.8 "Putative peptidylp	0.951	0.777	0.656	2.5e-191
UNIPROTKB|A8J0I6	569	FKB62 "Peptidyl-prolyl cis-tra	0.622	0.609	0.459	1.3e-88
UNIPROTKB|Q657L6	422	P0468H06.14-3 "Peptidyl-prolyl	0.574	0.758	0.457	3.3e-70
UNIPROTKB|F1NIM4	442	FKBP4 "Uncharacterized protein	0.658	0.830	0.371	9.7e-64
UNIPROTKB|F1NP08	464	FKBP4 "Uncharacterized protein	0.658	0.790	0.371	9.7e-64
UNIPROTKB|F1MU79	459	FKBP4 "Peptidyl-prolyl cis-tra	0.658	0.799	0.360	3.9e-60

TAIR|locus:2090265 ROF1 "AT3G25230" [Arabidopsis thaliana (taxid:3702)]

 Score = 2112 (748.5 bits), Expect = 1.2e-218, P = 1.2e-218
 Identities = 411/549 (74%), Positives = 453/549 (82%)

Query:     1 MDEDFDIPAAN--EXXXXXXXXXXXXXXKVGEEKEIGNQXXXXXXXXXXXXWDTPENGDE 58
             MD +F++P                    KVGEEKEI  Q            ++TPENGDE
Sbjct:     1 MDANFEMPPVGGMNDDDDMDFGDGASFLKVGEEKEI-QQGLKKKLLKEGEGYETPENGDE 59

Query:    59 VEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
             VEVHYTGTLLDGT+FDSSRDR+TPFKFTLGQG VIKGWDIGIKTMKKGENAVFTIP ELA
Sbjct:    60 VEVHYTGTLLDGTKFDSSRDRATPFKFTLGQGQVIKGWDIGIKTMKKGENAVFTIPAELA 119

Query:   119 YGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPKDLDEVLVN 178
             YGESGSPPTIP NATLQFDVELL W SV                   WENPKDLDEVLV 
Sbjct:   120 YGESGSPPTIPANATLQFDVELLKWDSVKDICKDGGVFKKILAVGEKWENPKDLDEVLVK 179

Query:   179 YEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA 238
             +EA+LEDG VVGK+DGVEFTVKDGHFCP L KAVKTMKKGEKVLL VKPQYGFGEKGK A
Sbjct:   180 FEAKLEDGTVVGKSDGVEFTVKDGHFCPALTKAVKTMKKGEKVLLTVKPQYGFGEKGKPA 239

Query:   239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIG 298
             S  EGAVPPNATL+I LELVSWKTVSE+TDD KV+KK+LKEGDG+ERPNEGAVVKVKLIG
Sbjct:   240 SAGEGAVPPNATLEINLELVSWKTVSEVTDDNKVVKKVLKEGDGYERPNEGAVVKVKLIG 299

Query:   299 KLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAE 358
             KLQDGTVF+KKGH E E+ FEFKTDEEQV+DGLDRAV+ MKK EVAL+TI PEYAFGS E
Sbjct:   300 KLQDGTVFLKKGHGENEEPFEFKTDEEQVVDGLDRAVMKMKKGEVALVTIDPEYAFGSNE 359

Query:   359 SQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARA 418
             SQQELAVVPPNSTV YEV+L++F+KE+ESWDMNT            +GN+ FK GKY+ A
Sbjct:   360 SQQELAVVPPNSTVTYEVDLLTFDKERESWDMNTEEKIEAASKKKEEGNSKFKGGKYSLA 419

Query:   419 SKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD 478
             SKRYEKAVK+IEYDTSF +EEKKQAKALKVACNLN+AACKLKLKDYKQAEKLCTKVL+L+
Sbjct:   420 SKRYEKAVKFIEYDTSFSEEEKKQAKALKVACNLNDAACKLKLKDYKQAEKLCTKVLELE 479

Query:   479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
             S NVKALYRRAQAY++++DLDLAEFD+KKALEIDP+NR+VKLE K LKEKMKE+NKKEAK
Sbjct:   480 STNVKALYRRAQAYMELSDLDLAEFDVKKALEIDPNNREVKLEQKRLKEKMKEFNKKEAK 539

Query:   539 FYGNMFAKM 547
             FYGNMFAK+
Sbjct:   540 FYGNMFAKL 548

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=RCA;IMP

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0006457 "protein folding" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0071944 "cell periphery" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

TAIR|locus:2152561 ROF2 "AT5G48570" [Arabidopsis thaliana (taxid:3702)]

 Score = 2044 (724.6 bits), Expect = 1.9e-211, P = 1.9e-211
 Identities = 388/523 (74%), Positives = 443/523 (84%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             K+GEE EIG              WDTPENGDEVEVHYTGTLLDGT+FDSSRDR TPFKFT
Sbjct:    36 KIGEEMEIGKSGLKKKLVKECEKWDTPENGDEVEVHYTGTLLDGTKFDSSRDRGTPFKFT 95

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG+VIKGWD+GIKTMKKGENA+FTIPPELAYGE+GSPPTIPPNATLQFDVEL++W SV
Sbjct:    96 LGQGHVIKGWDLGIKTMKKGENAIFTIPPELAYGETGSPPTIPPNATLQFDVELIAWRSV 155

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WE PKDLDEV V YEARLEDG +VGK+DGVEFTVK+GHFCP
Sbjct:   156 KDICGDGGVSKKIIVEGEKWEKPKDLDEVYVKYEARLEDGTIVGKSDGVEFTVKEGHFCP 215

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSAS-GNEGAVPPNATLQIALELVSWKTVSE 265
              L+KAVKTMK+GEKVLL VKPQYGFGE G+ AS G + A+PPNATLQI LELVSWKTV E
Sbjct:   216 ALSKAVKTMKRGEKVLLTVKPQYGFGEFGRPASDGLQAAIPPNATLQIDLELVSWKTVVE 275

Query:   266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VFVKKGHSEEEQLFEFKTDE 324
             +TDD+KVIKKILKEG+G+ERPNEGA+VK+KLIGKLQDGT VFVKKGH E+E+ FEFK DE
Sbjct:   276 VTDDRKVIKKILKEGEGYERPNEGAIVKLKLIGKLQDGTTVFVKKGHEEDEEPFEFKIDE 335

Query:   325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
             EQVI+GL++AV+ MKK EVAL+TI+PEYAFGS+ES+QELAV+PPNSTV+YEVELVSF KE
Sbjct:   336 EQVIEGLEKAVMGMKKGEVALITISPEYAFGSSESKQELAVIPPNSTVYYEVELVSFIKE 395

Query:   385 KESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
             KESWDMNT            +GN LFKAGKYARASKRYE+ VKYIEYD++F +EEKK++K
Sbjct:   396 KESWDMNTQERIEAAGKKKEEGNVLFKAGKYARASKRYERGVKYIEYDSTFDEEEKKKSK 455

Query:   445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
              LK+ACNLN+AACKLKLKDYK+A KL TKVL++DSRNVKA+YRRA AY++ ADLDLAE D
Sbjct:   456 DLKIACNLNDAACKLKLKDYKEAAKLSTKVLEMDSRNVKAMYRRAHAYLETADLDLAELD 515

Query:   505 IKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             IKKALEIDPDN++VK+EYK LKEK+KEYNKK+AKFY NM +KM
Sbjct:   516 IKKALEIDPDNKEVKIEYKKLKEKVKEYNKKDAKFYSNMLSKM 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=IBA

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS;IBA

GO:0005528 "FK506 binding" evidence=ISS;IBA

GO:0005634 "nucleus" evidence=ISM

GO:0006457 "protein folding" evidence=IEA;RCA

GO:0016020 "membrane" evidence=IBA

GO:0018208 "peptidyl-proline modification" evidence=IBA

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0070370 "cellular heat acclimation" evidence=IMP

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

UNIPROTKB|Q7F1F2 OJ1191_A10.119 "cDNA clone:J033121G16, full insert sequence" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 2033 (720.7 bits), Expect = 2.7e-210, P = 2.7e-210
 Identities = 390/521 (74%), Positives = 429/521 (82%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            W+TPE GDEVEVHYTGTLLDG +FDSSRDR TPFKF 
Sbjct:    35 KVGEEKEIGKQGLRKKLLKEGEGWETPEVGDEVEVHYTGTLLDGKKFDSSRDRGTPFKFK 94

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENAVFTIPP+LAYGESGSPPTIP +ATLQFDVELLSWTSV
Sbjct:    95 LGQGQVIKGWDLGIKTMKKGENAVFTIPPDLAYGESGSPPTIPASATLQFDVELLSWTSV 154

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEV V YEARLEDG V+ K++G EFTVKDG FCP
Sbjct:   155 KDICQDGGIFKKILKEGEKWENPKDLDEVFVKYEARLEDGTVISKSEGAEFTVKDGFFCP 214

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              LAKAVKTMKK EKVLL VKPQYGFGE G+ A+G EGAVPPNATL + LELVSWKTV+EI
Sbjct:   215 ALAKAVKTMKKAEKVLLTVKPQYGFGENGRPAAGEEGAVPPNATLLVNLELVSWKTVTEI 274

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDKK++KK+L EG G+ERPNEGAVVKVK+ GKLQDGT+F KKGH E E  FEFKTDEE+
Sbjct:   275 GDDKKILKKVLTEGTGYERPNEGAVVKVKITGKLQDGTIFTKKGHDEPEP-FEFKTDEEE 333

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VIDG+DRAV+ MK  EVAL+TI PEYAFGS ES+Q+LAVVPPNSTV YEVELVSF K+KE
Sbjct:   334 VIDGIDRAVLNMKNGEVALVTIPPEYAFGSTESKQDLAVVPPNSTVIYEVELVSFVKDKE 393

Query:   387 SWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
             SWD+N             +GN LFK GKY RASKRYEKA K+IEYD+SF ++EKKQ+K L
Sbjct:   394 SWDLNNTEKIETAGAKKEEGNALFKLGKYVRASKRYEKAAKFIEYDSSFSEDEKKQSKQL 453

Query:   447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
             KV CNLNNAACKLKLKDYKQAEKLCTKVL+LDS+NVKALYRRAQAY+Q+ADL+LAE DIK
Sbjct:   454 KVTCNLNNAACKLKLKDYKQAEKLCTKVLELDSQNVKALYRRAQAYMQLADLELAEVDIK 513

Query:   507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             KALEIDPDNRDVKL YK LKEK+KEYNKK+AKFY NMFAKM
Sbjct:   514 KALEIDPDNRDVKLTYKNLKEKVKEYNKKDAKFYSNMFAKM 554

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q9XFE4 OSJNBa0091C07.4 "OSJNBa0091C07.4 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1979 (701.7 bits), Expect = 1.4e-204, P = 1.4e-204
 Identities = 376/521 (72%), Positives = 432/521 (82%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             KVGEEKEIG Q            WD PE+GDEV+VHYTGTLLDGT+FDSSRDR TPFKF+
Sbjct:    39 KVGEEKEIGKQGLRKRLLKEGEGWDRPESGDEVQVHYTGTLLDGTKFDSSRDRGTPFKFS 98

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD GIKTMKKGE AVFT+PPELAYGE+GSPP IPPNATL+FDVELLSW SV
Sbjct:    99 LGQGEVIKGWDEGIKTMKKGEQAVFTVPPELAYGEAGSPPAIPPNATLRFDVELLSWASV 158

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENPKDLDEVLV YEARLEDG VV K+DGVEF VKDG+FCP
Sbjct:   159 KDICKDGGIFKKVLAEGHKWENPKDLDEVLVKYEARLEDGTVVSKSDGVEFAVKDGYFCP 218

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              L+KAVKTMKKGEKVLL VKPQYGFGE+GK ASG E AVPPNATL + LEL+SWKTV+ I
Sbjct:   219 ALSKAVKTMKKGEKVLLTVKPQYGFGEQGKPASGAEAAVPPNATLYVDLELLSWKTVTLI 278

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              DDK+++KK+LKEG+G+ERPN+GAVV+V+ IGKL+DGTVF KKGH  +E  FEF+TDEEQ
Sbjct:   279 GDDKRILKKVLKEGEGYERPNDGAVVRVRFIGKLEDGTVFSKKGHDGDEP-FEFRTDEEQ 337

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             VI+GLDR V+TMKK EVAL+ + P++AFGS E++Q+LAVVP NSTV YEVELVSFEKEKE
Sbjct:   338 VIEGLDRTVVTMKKGEVALVRLPPQHAFGSTETKQDLAVVPANSTVWYEVELVSFEKEKE 397

Query:   387 SWDM-NTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWD+ +             +GN  FK GKYA+ASKRYEKA KYIEYD+SF D+EKKQ+KA
Sbjct:   398 SWDLKDNAEKIEAAAKKKDEGNVWFKMGKYAKASKRYEKAAKYIEYDSSFTDDEKKQSKA 457

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             LKV+C LNNAACKLKLK+Y++AEKLCTKVL+L+S NVKALYRR QAYI++ADL+LAE D+
Sbjct:   458 LKVSCKLNNAACKLKLKEYREAEKLCTKVLELESTNVKALYRRTQAYIELADLELAELDV 517

Query:   506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK 546
             KKALEIDPDNRDVK+ YKTLKEK+KEYNK++AKFYGNMFAK
Sbjct:   518 KKALEIDPDNRDVKMVYKTLKEKIKEYNKRDAKFYGNMFAK 558

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q6K5Q1 P0579G08.8 "Putative peptidylprolyl isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1854 (657.7 bits), Expect = 2.5e-191, P = 2.5e-191
 Identities = 349/532 (65%), Positives = 420/532 (78%)

Query:    27 KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
             +VGEEKEIG +            W+ P+ GDEV+VHYTGTLLDGT+FDSSRDR  PFKFT
Sbjct:    84 EVGEEKEIGKEGLRKKLVKEGEGWERPDAGDEVQVHYTGTLLDGTKFDSSRDRDAPFKFT 143

Query:    87 LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
             LGQG VIKGWD+GIKTMKKGENA+FTIPPELAYGE GSPP IPPNATLQFDVEL+SW SV
Sbjct:   144 LGQGQVIKGWDLGIKTMKKGENAIFTIPPELAYGEDGSPPVIPPNATLQFDVELISWESV 203

Query:   147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                                WENP+D DEV V YE RLEDG VV ++DGVEFTVKDGHFCP
Sbjct:   204 KDICKDGGILKKVLAEGTKWENPRDRDEVFVKYEVRLEDGTVVAESDGVEFTVKDGHFCP 263

Query:   207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
              ++KAVKTMKK EK LL VKPQYGFGE+G+ A+ +E A+PPNATL I LELVSWK V+EI
Sbjct:   264 AISKAVKTMKKNEKALLTVKPQYGFGEQGRPAARDEAAIPPNATLHINLELVSWKAVTEI 323

Query:   267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
              +DKK++KKIL EG+G+ERP++  +V+VKLIGKL+DGT+FV +GH  +E  FEFKTDE+Q
Sbjct:   324 GNDKKILKKILHEGEGYERPSDCTLVRVKLIGKLEDGTIFVTRGHDGDEP-FEFKTDEDQ 382

Query:   327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
             V++GLD+AV++MKK EVAL+TI PEYAFGS E++Q+L+VVPPNSTV+YEVELVSF+KEKE
Sbjct:   383 VVEGLDKAVLSMKKGEVALVTIPPEYAFGSDETRQDLSVVPPNSTVYYEVELVSFDKEKE 442

Query:   387 SWDMN-TXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
             SWDM               +GN  FK  KYARASKRY KA+ +I+YD+SF +EEK+ +K 
Sbjct:   443 SWDMKENTEKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKP 502

Query:   446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
             LKV+C LNNAACKLKLKDYK+A++LCT+VL+LDS NVKA YRRAQA++ + D DLAE DI
Sbjct:   503 LKVSCKLNNAACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDI 562

Query:   506 KKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSDLDCGG 557
             KKALEIDPDNRDVK+ Y+ LKEK+KE  +KE K YGNM +K++   D +  G
Sbjct:   563 KKALEIDPDNRDVKMGYRRLKEKVKEQKRKETKLYGNMISKLSKLEDSETEG 614

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|A8J0I6 FKB62 "Peptidyl-prolyl cis-trans isomerase, FKBP-type" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 734 (263.4 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
 Identities = 166/361 (45%), Positives = 217/361 (60%)

Query:   192 ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATL 251
             A+ V FTV +G   P +  AVKTMK+GE+V L VKP+YGFG  G S  G    VPP A L
Sbjct:   171 AEAVTFTVSEGLLVPAVRVAVKTMKRGERVQLKVKPEYGFGAAGSSEYG----VPPGADL 226

Query:   252 QIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGK-LQDGTVFVKK 309
             +I L L+ W  V    ++  V+KK L E D  + RPNEGA V +++ GK L DG VF+K 
Sbjct:   227 EIELTLLGWNNVEYCNNENTVVKKTLVECDNEYRRPNEGASVTLRVTGKVLPDGPVFMKH 286

Query:   310 GHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIA-PEYAFGSAE---SQQELAV 365
             G   E     F T+EEQV +GL+ AV+ MKK E A++T+  P Y +G      S +   V
Sbjct:   287 GEGSE---LRFVTEEEQVPEGLELAVMKMKKGETAVVTVNDPAYGYGDKPRTVSVEGSEV 343

Query:   366 -VPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEK 424
              VP  S + +EV+LV F   KE+W+M+             +GN  FK+GK ARA   +++
Sbjct:   344 EVPAGSRLQFEVDLVDFTNAKETWEMSDIEKAHAAKQRKDKGNAFFKSGKLARAQSCWDR 403

Query:   425 AVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA 484
             AV  + YD SF DE K   K +K +C LN AA  LK   +K A K CT VLD+D  +VKA
Sbjct:   404 AVAAVSYDKSFPDEAKAIGKEVKRSCWLNLAALDLKRAHWKDAVKHCTSVLDIDPTSVKA 463

Query:   485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF 544
             LYRRAQA++ MAD   AE D+K+ALE++PD+ DV    + LK   +E NKKEAK Y  MF
Sbjct:   464 LYRRAQAHMGMADFFEAEQDVKRALELEPDSADVLALQRRLKAAQREQNKKEAKLYSKMF 523

Query:   545 A 545
             A
Sbjct:   524 A 524

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|Q657L6 P0468H06.14-3 "Peptidyl-prolyl cis-trans isomerase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
 Identities = 151/330 (45%), Positives = 216/330 (65%)

Query:    58 EVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
             EV+VH+TG L+DGTQF SSR+   P +F LGQ +V+ G+++ + +M+ GE A+FTIP  L
Sbjct:    75 EVQVHFTGELVDGTQFVSSRENDIPERFILGQEDVMHGFNLAVSSMQPGEKAIFTIPSAL 134

Query:   118 AYGESGSP---PT-IPPNATLQFDVELLS-WTSVXXXXXXXXXXXXXXXXXXXWENPKDL 172
                ++GSP   P+ IPPN TL+F++EL++ +T +                    +     
Sbjct:   135 TMTKAGSPASIPSNIPPNQTLRFEIELIAMFTIIDIFKDEGILKKIVKNAEPDRKQSHSS 194

Query:   173 DEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFG 232
             D V V Y+A L DG  V K++GVEF++ DG FCP  A AV TMK+GE+ +L VKP+Y FG
Sbjct:   195 DFVFVKYDACLMDGTSVSKSEGVEFSLTDGFFCPAFAHAVHTMKEGEEAVLIVKPKYAFG 254

Query:   233 EKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEG-AV 291
             E+G+ + G E AVPP+ATL + L  V W  +  I +D+ + KK L+ G+      +  AV
Sbjct:   255 EQGRPSQGEEAAVPPDATLYVHLLFVCW--IRRIGEDQAIAKKTLRIGNSQRIHTQSQAV 312

Query:   292 VKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE 351
             VKV+L+GKLQDGTVF ++G+ ++E  FEF  DE QVIDGLD +V+TM++ EVA  TI P+
Sbjct:   313 VKVRLLGKLQDGTVFDRRGYGDDEP-FEFVVDEGQVIDGLDESVMTMEEGEVAEFTIPPQ 371

Query:   352 YAFGSAESQQ-ELAVVPPNSTVHYEVELVS 380
             +AF +  S Q + A VP N+TV Y++EL+S
Sbjct:   372 HAFDAVGSDQHQFAFVPRNATVVYKIELLS 401

GO:0000413 "protein peptidyl-prolyl isomerization" evidence=ISS

GO:0003755 "peptidyl-prolyl cis-trans isomerase activity" evidence=ISS

GO:0005528 "FK506 binding" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0018208 "peptidyl-proline modification" evidence=ISS

UNIPROTKB|F1NIM4 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 144/388 (37%), Positives = 231/388 (59%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KLK+Y QA + C K L+LDS N K L+RR +A++ + D +LA  D +K +++ P N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             ++  T ++K++E ++KE K Y NMF ++
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRL 411

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1NP08 FKBP4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 650 (233.9 bits), Expect = 9.7e-64, P = 9.7e-64
 Identities = 144/388 (37%), Positives = 231/388 (59%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E+P   D+V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    38 ESPMIGDKVTVHYTGWLLDGTKFDSSLDRRDKFSFDLGKGEVIKAWDIAVATMKVGEICQ 97

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++TDD+   +I++I K+G
Sbjct:    98 ITCKPEYAYG-----LAGSPPKIPPNATLIFEIELFEFKG-EDLTDDEDGGIIRRIRKKG 151

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF-KTDEEQVIDGLDRAVITMK 339
             +G+ +PNEGA+V+++  G+ +D   F K+     E  FE  + D   +  GL++A+  M+
Sbjct:   152 EGYLKPNEGALVEIQFEGRYRD-RAFDKR-----ELRFEIGEGDNYDLPHGLEKAIQKME 205

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K+E ++  + P Y FGS  + +E   +PP++ + YEV+L SFEK KESW+MNT       
Sbjct:   206 KSEESIFYLKPNYGFGS--TGKEKFQIPPDAELQYEVKLKSFEKAKESWEMNTEEKLEQS 263

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY RA+ +Y+K V ++E+++   DEE  +AK+L++A +LN A C L
Sbjct:   264 CMVKERGTQYFKEGKYKRAALQYKKIVLWLEHESGLSDEEDTKAKSLRLAAHLNLAMCHL 323

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KLK+Y QA + C K L+LDS N K L+RR +A++ + D +LA  D +K +++ P N+  K
Sbjct:   324 KLKEYSQALENCNKALELDSSNEKGLFRRGEAHLAVNDFELARGDFQKVIQLYPSNKAAK 383

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
             ++  T ++K++E ++KE K Y NMF ++
Sbjct:   384 VQLVTCQQKIREQHEKEKKMYANMFQRL 411

GO:0006457 "protein folding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0051219 "phosphoprotein binding" evidence=IEA

UNIPROTKB|F1MU79 FKBP4 "Peptidyl-prolyl cis-trans isomerase FKBP4, N-terminally processed" [Bos taurus (taxid:9913)]

 Score = 616 (221.9 bits), Expect = 3.9e-60, P = 3.9e-60
 Identities = 140/388 (36%), Positives = 223/388 (57%)

Query:   167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
             E P   D V V+Y   L DG      + + D   F +  G        AV TMK GE   
Sbjct:    45 ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDRFSFDLGKGEVIKAWDIAVATMKVGEVCH 104

Query:   223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK--VIKKILKEG 280
             +  KP+Y +G      +G+   +PPNATL   +EL  +K   ++T+++   +I++I   G
Sbjct:   105 ITCKPEYAYG-----LAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIRTRG 158

Query:   281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMK 339
             +G+ +PNEGA+V+V L G  +D  VF ++     E  FE    E   +  GL++A+  M+
Sbjct:   159 EGYAKPNEGALVEVALEGYFKD-QVFDRR-----ELRFEVGEGESMDLPCGLEKAIQRME 212

Query:   340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXX 399
             K E +++ + P YAFGSA   +E   +PPN+ + YE+ L SFEK KESW+M++       
Sbjct:   213 KGEHSIVYLKPRYAFGSAG--KEKFQIPPNAELKYEIHLKSFEKAKESWEMSSEEKLEQS 270

Query:   400 XXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
                  +G   FK GKY +A  +Y+K V ++EY++SF DE+ ++A+AL++A +LN A C L
Sbjct:   271 TIVKERGTVYFKEGKYKQAVLQYKKIVSWLEYESSFSDEDAEKAQALRLASHLNLAMCHL 330

Query:   460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
             KL+ +  A + C K L+LDS N K L+RR +A++ + D DLA  D +K L++ P N+  K
Sbjct:   331 KLQAFSAAIENCNKALELDSNNEKGLFRRGEAHLAVNDFDLARADFQKVLQLYPSNKAAK 390

Query:   520 LEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
              +    ++++++  +KE K Y NMF ++
Sbjct:   391 AQLVVCQQRIRKQLEKEKKLYANMFERL 418

GO:0051219 "phosphoprotein binding" evidence=IEA

GO:0046661 "male sex differentiation" evidence=IEA

GO:0035259 "glucocorticoid receptor binding" evidence=IEA

GO:0031503 "protein complex localization" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0030850 "prostate gland development" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0007566 "embryo implantation" evidence=IEA

GO:0006463 "steroid hormone receptor complex assembly" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FJL3	FKB65_ARATH	5, ., 2, ., 1, ., 8	0.7996	0.9551	0.9204	no	no
Q43207	FKB70_WHEAT	5, ., 2, ., 1, ., 8	0.7891	0.9856	0.9821	N/A	no
Q38931	FKB62_ARATH	5, ., 2, ., 1, ., 8	0.8218	0.9820	0.9927	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	5.2.1	0.998
4th Layer	5.2.1.8	0.994

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00011129001 SubName- Full=Chromosome undetermined scaffold_2180, whole genome shotgun sequence; (571 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	557
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	2e-41
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	4e-40
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	3e-23
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	4e-23
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	6e-23
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-17
pfam00254	94	pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-t	1e-16
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	1e-14
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-13
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-11
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-10
COG0545	205	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans	4e-09
TIGR03516	177	TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase,	1e-08
TIGR02552	135	TIGR02552, LcrH_SycD, type III secretion low calci	3e-07
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	8e-07
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	1e-06
pfam13414	69	pfam13414, TPR_11, TPR repeat	2e-06
PRK15095	156	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-	2e-06
pfam00515	34	pfam00515, TPR_1, Tetratricopeptide repeat	6e-06
smart00028	34	smart00028, TPR, Tetratricopeptide repeats	2e-05
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	4e-05
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	4e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	5e-05
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	6e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	6e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
pfam13181	34	pfam13181, TPR_8, Tetratricopeptide repeat	1e-04
pfam07719	34	pfam07719, TPR_2, Tetratricopeptide repeat	2e-04
COG1047	174	COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans	3e-04
pfam13424	78	pfam13424, TPR_12, Tetratricopeptide repeat	3e-04
PRK10902	269	PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-	6e-04
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.001
PRK11570	206	PRK11570, PRK11570, peptidyl-prolyl cis-trans isom	0.002
pfam13428	44	pfam13428, TPR_14, Tetratricopeptide repeat	0.002
TIGR02521	234	TIGR02521, type_IV_pilW, type IV pilus biogenesis/	0.002
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.003
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.003
COG3063	250	COG3063, PilF, Tfp pilus assembly protein PilF [Ce	0.003
pfam13414	69	pfam13414, TPR_11, TPR repeat	0.004
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.004

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score =  143 bits (364), Expect = 2e-41
 Identities = 59/94 (62%), Positives = 65/94 (69%), Gaps = 1/94 (1%)

Query: 49  GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGEN 108
           G +  + GD V VHYTG L DGT FDSS+DR  PF+FTLG G VI GWD G+  MK GE 
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 109 AVFTIPPELAYGESGS-PPTIPPNATLQFDVELL 141
              TIPPELAYGE G     IPPNATL F+VELL
Sbjct: 61  RKLTIPPELAYGEEGLAGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score =  144 bits (365), Expect = 4e-40
 Identities = 62/105 (59%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++K G+G   P+ GD V VHYTGTL+DGT FDSS DR  P +F LG   VI GWD
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGG--VIPGWD 158

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPPELAYGE G P  IPPN+TL F+VELL 
Sbjct: 159 EGLQGMKVGGKRKLTIPPELAYGERGVPGVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 93.8 bits (234), Expect = 3e-23
 Identities = 39/96 (40%), Positives = 51/96 (53%), Gaps = 4/96 (4%)

Query: 284 ERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV 343
           E+  +G  V V   GKL+DGTVF         + FEF     QVI G D  ++ MK  E 
Sbjct: 3   EKAKKGDTVTVHYTGKLEDGTVFDSSKD--RGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 344 ALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             LTI PE A+G         V+PPN+T+ +EVEL+
Sbjct: 61  RKLTIPPELAYGEEGLAG--GVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 98.7 bits (246), Expect = 4e-23
 Identities = 54/105 (51%), Positives = 67/105 (63%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  K+ KEG G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 147 GLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 203

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G  P IP N+TL FDVELL 
Sbjct: 204 EGLKNIKKGGKIKLVIPPELAYGKAGV-PGIPANSTLVFDVELLD 247

Length = 269

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 96.4 bits (240), Expect = 6e-23
 Identities = 50/104 (48%), Positives = 63/104 (60%), Gaps = 3/104 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ +++ +GEG   P   D V VHYTG L+DGT FDSS  R  P +F +    VI GW 
Sbjct: 103 GLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWI 159

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             +  M  G     TIP ELAYGE G+  +IPP +TL F+VELL
Sbjct: 160 EALTLMPVGSKWELTIPHELAYGERGAGASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 76.3 bits (188), Expect = 5e-17
 Identities = 36/112 (32%), Positives = 51/112 (45%), Gaps = 15/112 (13%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
              GN  +K G Y  A + YEKA++           +   A A       N AA   KL 
Sbjct: 4   LNLGNLYYKLGDYDEALEYYEKALEL----------DPDNADAY-----YNLAAAYYKLG 48

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
            Y++A +   K L+LD  N KA Y    AY ++   + A    +KALE+DP+
Sbjct: 49  KYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|215821 pfam00254, FKBP_C, FKBP-type peptidyl-prolyl cis-trans isomerase

 Score = 74.6 bits (184), Expect = 1e-16
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 8/98 (8%)

Query: 165 KWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEK 220
             E  K  D V V+Y  +LEDG V      +    EFT+  G   P   + +  MK GEK
Sbjct: 1   GPEKAKKGDTVTVHYTGKLEDGTVFDSSKDRGKPFEFTLGSGQVIPGWDEGLLGMKVGEK 60

Query: 221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             L + P+  +GE+G       G +PPNATL   +EL+
Sbjct: 61  RKLTIPPELAYGEEGL----AGGVIPPNATLVFEVELL 94

Length = 94

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 72.4 bits (178), Expect = 1e-14
 Identities = 44/114 (38%), Positives = 55/114 (48%), Gaps = 14/114 (12%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQV 327
            +  K+LK GDG   P +G  V V   G L DGTVF     +G     Q  EF      V
Sbjct: 102 GLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRG-----QPAEFPLG--GV 153

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
           I G D  +  MK      LTI PE A+G    +    V+PPNST+ +EVEL+  
Sbjct: 154 IPGWDEGLQGMKVGGKRKLTIPPELAYG---ERGVPGVIPPNSTLVFEVELLDV 204

Length = 205

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 67.7 bits (166), Expect = 3e-13
 Identities = 25/68 (36%), Positives = 36/68 (52%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           E GD V +HYT  + DG   D++ +   P  F +G G +I G +  +   + GE     I
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEI 63

Query: 114 PPELAYGE 121
           PPE A+GE
Sbjct: 64  PPEDAFGE 71

Length = 174

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 59.3 bits (144), Expect = 5e-11
 Identities = 27/80 (33%), Positives = 38/80 (47%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
                KL DY +A +   K L+LD  N  A Y  A AY ++   + A  D +KALE+DPD
Sbjct: 7   GNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD 66

Query: 515 NRDVKLEYKTLKEKMKEYNK 534
           N            K+ +Y +
Sbjct: 67  NAKAYYNLGLAYYKLGKYEE 86

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 56.2 bits (136), Expect = 3e-10
 Identities = 29/74 (39%), Positives = 41/74 (55%), Gaps = 6/74 (8%)

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM-ADLD 499
             A+ALK     N      KL DY +A +   K L+LD  N +A Y  A AY+++  D +
Sbjct: 1   DNAEALK-----NLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYE 55

Query: 500 LAEFDIKKALEIDP 513
            A  D++KALE+DP
Sbjct: 56  EALEDLEKALELDP 69

Length = 69

>gnl|CDD|223619 COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

 Score = 56.3 bits (136), Expect = 4e-09
 Identities = 35/109 (32%), Positives = 50/109 (45%), Gaps = 8/109 (7%)

Query: 153 GGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHFCPTLAK 210
            G+  K+LK G+    PK  D V V+Y   L DG V       G       G   P   +
Sbjct: 101 SGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLGGVIPGWDE 159

Query: 211 AVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            ++ MK G K  L + P+  +GE+G       G +PPN+TL   +EL+ 
Sbjct: 160 GLQGMKVGGKRKLTIPPELAYGERGVP-----GVIPPNSTLVFEVELLD 203

Length = 205

>gnl|CDD|132555 TIGR03516, ppisom_GldI, peptidyl-prolyl isomerase, gliding motility-associated

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 33/91 (36%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 52  TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF 111
           TPE GD V   Y    LDG    S  +   P  + + Q ++  G   G+K MK+GE A F
Sbjct: 85  TPEFGDLVTFEYDIRALDGDVIYSEEELG-PQTYKVDQQDLFSGLRDGLKLMKEGETATF 143

Query: 112 TIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             P   AYG  G    I PN  +   V LL+
Sbjct: 144 LFPSHKAYGYYGDQNKIGPNLPIISTVTLLN 174

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype. Length = 177

>gnl|CDD|233924 TIGR02552, LcrH_SycD, type III secretion low calcium response chaperone LcrH/SycD

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           EQ   ++          RY++A+K  +   ++     +    L        AAC   LK+
Sbjct: 15  EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGL--------AACCQMLKE 66

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y++A         LD  + +  +  A+  + + + + A   +  A+EI  +N     EY 
Sbjct: 67  YEEAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENP----EYS 122

Query: 524 TLKEK---MKEY 532
            LKE+   M E 
Sbjct: 123 ELKERAEAMLES 134

Genes in this family are found in type III secretion operons. LcrH, from Yersinia is believed to have a regulatory function in the low-calcium response of the secretion system. The same protein is also known as SycD (SYC = Specific Yop Chaperone) for its chaperone role. In Pseudomonas, where the homolog is known as PcrH, the chaperone role has been demonstrated and the regulatory role appears to be absent. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. Length = 135

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 50.6 bits (119), Expect = 8e-07
 Identities = 39/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E+ +E   +  E    L   G    A  RYE+A++ +E       +  K          L
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLE-------KALKLNPDDDAEALL 206

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N     LKL  Y++A +   K L+LD  N +ALY  A   +++   + A   ++KALE+D
Sbjct: 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266

Query: 513 PD-NRDVKLEYKTLKEKMKEYNK 534
           PD           L E ++   K
Sbjct: 267 PDLYNLGLALLLLLAEALELLEK 289

Length = 291

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 39/149 (26%), Positives = 68/149 (45%), Gaps = 18/149 (12%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           ++ EE+ + A K KE+GN  ++   + +A K Y KA++       +              
Sbjct: 118 LSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYS------------- 164

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
              N AAC   L D+++  +  T  L+LD    KAL RRA AY  +     A  D+  A 
Sbjct: 165 ---NRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDL-TAS 220

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAK 538
            I    R+ +   + ++  +K++ + +AK
Sbjct: 221 CIIDGFRNEQSA-QAVERLLKKFAESKAK 248

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 45.4 bits (108), Expect = 2e-06
 Identities = 29/83 (34%), Positives = 39/83 (46%), Gaps = 16/83 (19%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + A   K  GN LFK G Y  A + YEKA++           +   A+A       N A 
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALEL----------DPDNAEAY-----YNLAL 45

Query: 457 CKLKL-KDYKQAEKLCTKVLDLD 478
             LKL KDY++A +   K L+LD
Sbjct: 46  AYLKLGKDYEEALEDLEKALELD 68

Length = 69

>gnl|CDD|237908 PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 1/75 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DG+  +S+R+   P  F LG G++ +G +  +  +K G+   F++
Sbjct: 6   QSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSL 65

Query: 114 PPELAYGESGSPPTI 128
            PE A+G   SP  I
Sbjct: 66  EPEAAFGVP-SPDLI 79

Length = 156

>gnl|CDD|201277 pfam00515, TPR_1, Tetratricopeptide repeat

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            KALY    AY+++   D A    +KALE++P+N
Sbjct: 1   AKALYNLGNAYLKLGKYDEALEYYEKALELNPNN 34

Length = 34

>gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats

 Score = 41.3 bits (98), Expect = 2e-05
 Identities = 15/34 (44%), Positives = 22/34 (64%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +ALY    AY+++ D D A    +KALE+DP+N
Sbjct: 1   AEALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 15/57 (26%), Positives = 24/57 (42%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           L+  DY +A       L       +AL    +A ++   L  A   ++ AL  DPD+
Sbjct: 8   LRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAADPDD 64

Length = 65

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 45.2 bits (105), Expect = 4e-05
 Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 1/161 (0%)

Query: 377 ELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436
            L+              E +E   +  E       AG     +    K  +  E      
Sbjct: 24  ALLEAGLALLELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLE 83

Query: 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA-QAYIQM 495
              + +         LN       L  Y++A +L  K L LD     A    A  A  ++
Sbjct: 84  KALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYEL 143

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            D + A    +KALE+DP+  ++      L   ++   + E
Sbjct: 144 GDYEEALELYEKALELDPELNELAEALLALGALLEALGRYE 184

Length = 291

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 41.6 bits (98), Expect = 4e-05
 Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L + G Y  A +  EKA++        G++  + A+AL      N A   L L DY 
Sbjct: 12  ALVLRRLGDYDEALELLEKALELAR---ELGEDHPETARAL-----NNLARLYLALGDYD 63

Query: 466 QAEKLCTKVLDLDSR 480
           +A +   K L L   
Sbjct: 64  EALEYLEKALALREA 78

Length = 78

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 45.2 bits (105), Expect = 5e-05
 Identities = 36/147 (24%), Positives = 58/147 (39%), Gaps = 7/147 (4%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           EK  A     +    L   G        YE+A++  E       E  + A+AL     L 
Sbjct: 119 EKALALDPDPDLAEALLALGALYEL-GDYEEALELYEKALELDPELNELAEAL-----LA 172

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
             A    L  Y++A +L  K L L+   + +AL      Y+++   + A    +KALE+D
Sbjct: 173 LGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELD 232

Query: 513 PDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           PDN +       L  ++  Y +     
Sbjct: 233 PDNAEALYNLALLLLELGRYEEALEAL 259

Length = 291

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 43.4 bits (103), Expect = 6e-05
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVVGKADG----VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
           D V ++Y  ++EDG VV   D     + F V  G   P L +A+   + GE+  + + P+
Sbjct: 7   DVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPE 66

Query: 229 YGFGE 233
             FGE
Sbjct: 67  DAFGE 71

Length = 174

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 45.8 bits (109), Expect = 6e-05
 Identities = 34/136 (25%), Positives = 51/136 (37%), Gaps = 18/136 (13%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
              G ++E    L KA       +  E A+   +Y    G       KAL +     +AA
Sbjct: 544 LRTGNEEEAVAWLEKA--AELNPQEIEPALALAQYYLGKGQ----LKKALAILNEAADAA 597

Query: 457 CK------------LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                         L   D  +A     K+L L   +  AL   A AY  M +   A   
Sbjct: 598 PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITS 657

Query: 505 IKKALEIDPDNRDVKL 520
           +K+ALE+ PDN + ++
Sbjct: 658 LKRALELKPDNTEAQI 673

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.7 bits (106), Expect = 1e-04
 Identities = 42/230 (18%), Positives = 79/230 (34%), Gaps = 32/230 (13%)

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVV-------PPNSTVHYE 375
             ++    +D  +     N  ALL    +        +  LA         P N  V   
Sbjct: 174 RFDEARALIDEVLTADPGNVDALLLKG-DLLLSLGNIELALAAYRKAIALRPNNIAVLLA 232

Query: 376 VELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTL-----FKAGKYARASKRYEKAVK--- 427
           +  +  E  +        + +          + L     F+   Y  A +  + A+K   
Sbjct: 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP 292

Query: 428 ------YIEYDTSFGDEEKKQA-----KALKVACNLNN-----AACKLKLKDYKQAEKLC 471
                  +   + +     +QA     + LK A N +      A+ +L+L    +A    
Sbjct: 293 EYLPALLLAGASEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATL 352

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           +  L LD  +  AL    +AY+ + D + A   + KA E+DP+N   + +
Sbjct: 353 SPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELDPENAAARTQ 402

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|205362 pfam13181, TPR_8, Tetratricopeptide repeat

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +A Y   Q Y+Q+ D + A+   +KALE+DP+N
Sbjct: 1   ARAYYLLGQIYLQLGDYEEAKEYYEKALELDPNN 34

Length = 34

>gnl|CDD|191825 pfam07719, TPR_2, Tetratricopeptide repeat

 Score = 38.3 bits (90), Expect = 2e-04
 Identities = 14/34 (41%), Positives = 21/34 (61%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +ALY    AY ++ D + A    +KALE+DP+N
Sbjct: 1   AEALYNLGLAYYKLGDYEEALEAYEKALELDPNN 34

This Pfam entry includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by pfam00515. Length = 34

>gnl|CDD|223976 COG1047, SlpA, FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
            +G VV +    K++DG V       E      F     Q+I GL+ A++  +  E   +
Sbjct: 4   EKGDVVSLHYTLKVEDGEVVDTTD--ENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTV 61

Query: 347 TIAPEYAFG 355
            I PE AFG
Sbjct: 62  EIPPEDAFG 70

Length = 174

>gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 452 LNN-AACKLKLKDYKQAEKLCTKVLDL-------DSRNVKALYRRAQAYIQMADLDLAEF 503
           LNN A    +L DY +A +L  K L+L            +AL   A+ Y+ + D D A  
Sbjct: 8   LNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALE 67

Query: 504 DIKKALEIDPD 514
            ++KAL +   
Sbjct: 68  YLEKALALREA 78

Length = 78

>gnl|CDD|236791 PRK10902, PRK10902, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 41.3 bits (97), Expect = 6e-04
 Identities = 35/110 (31%), Positives = 55/110 (50%), Gaps = 9/110 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKA 211
           G++ K+ KEG   E PKD D V+VNY+  L DG     +   G   + +     P   + 
Sbjct: 147 GLLYKVEKEG-TGEAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEG 205

Query: 212 VKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +K +KKG K+ L + P+  +G+ G         +P N+TL   +EL+  K
Sbjct: 206 LKNIKKGGKIKLVIPPELAYGKAGVP------GIPANSTLVFDVELLDVK 249

Length = 269

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 12/111 (10%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  ++L +GE    P   D V V+Y  +L DG V    V + +  EF V      P 
Sbjct: 101 ESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPV--NGVIPG 157

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
             +A+  M  G K  L +  +  +GE+G  AS     +PP +TL   +EL+
Sbjct: 158 WIEALTLMPVGSKWELTIPHELAYGERGAGAS-----IPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|183207 PRK11570, PRK11570, peptidyl-prolyl cis-trans isomerase; Provisional

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 38/108 (35%), Positives = 53/108 (49%), Gaps = 14/108 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++L +G+G   P     V+V   GKL DGTVF   V +G     +  EF  +   VI G 
Sbjct: 107 RVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARG-----EPAEFPVN--GVIPGW 158

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
             A+  M       LTI  E A+G   +    A +PP ST+ +EVEL+
Sbjct: 159 IEALTLMPVGSKWELTIPHELAYGERGAG---ASIPPFSTLVFEVELL 203

Length = 206

>gnl|CDD|222121 pfam13428, TPR_14, Tetratricopeptide repeat

 Score = 35.6 bits (82), Expect = 0.002
 Identities = 14/41 (34%), Positives = 23/41 (56%)

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
             AL   A+A + + DLD A   +++AL +DPD+ +  L  
Sbjct: 1   PAALLALARALLALGDLDEALALLRRALALDPDDPEALLLL 41

Length = 44

>gnl|CDD|131573 TIGR02521, type_IV_pilW, type IV pilus biogenesis/stability protein PilW

 Score = 39.2 bits (92), Expect = 0.002
 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 13/88 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L + GKY +A +++E+A++   Y           A++L      N   C LK  D+ 
Sbjct: 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQ--------PARSL-----ENAGLCALKAGDFD 152

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +AEK  T+ L +D +  ++L   A+ Y 
Sbjct: 153 KAEKYLTRALQIDPQRPESLLELAELYY 180

Members of this family are designated PilF in ref (PMID:8973346) and PilW in ref (PMID:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. Length = 234

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 37.0 bits (86), Expect = 0.003
 Identities = 17/52 (32%), Positives = 25/52 (48%)

Query: 483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
           +AL      Y ++ D D A    +KALE+DPDN D          K+ +Y +
Sbjct: 1   EALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEE 52

Length = 100

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 28/116 (24%), Positives = 38/116 (32%), Gaps = 16/116 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G YA A K   KA+                    K       A   L    ++
Sbjct: 63  GKIYLALGDYAAAEKELRKAL---------------SLGYPKNQVLPLLARAYLLQGKFQ 107

Query: 466 QAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
           Q          LD      L   R  AY+ +  L+LA+   ++AL IDP +   KL
Sbjct: 108 QVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKL 163

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|225605 COG3063, PilF, Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 24/77 (31%), Positives = 35/77 (45%)

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
           DY QA+K   K L+ D     A   RA  Y ++ + DLA+   +KAL + P+N DV   Y
Sbjct: 50  DYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY 109

Query: 523 KTLKEKMKEYNKKEAKF 539
                      +   +F
Sbjct: 110 GAFLCAQGRPEEAMQQF 126

Length = 250

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 35.8 bits (83), Expect = 0.004
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
            N +AL     A  ++ D D A    +KALE+DPDN +          K+ + + +EA  
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGK-DYEEALE 59

Query: 540 Y 540
            
Sbjct: 60  D 60

Length = 69

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 26/77 (33%), Positives = 38/77 (49%)

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
           D+  A  L T+ +DLD  N +    RAQA I++ +   A  D  KA+E+DP      L  
Sbjct: 17  DFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRK 76

Query: 523 KTLKEKMKEYNKKEAKF 539
            T   K++EY   +A  
Sbjct: 77  GTACMKLEEYQTAKAAL 93

Length = 356

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	557
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	100.0
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	100.0
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.96
KOG0549	188	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.95
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.94
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.94
KOG0544	108	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.92
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.88
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.87
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.87
COG0545	205	FkpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.86
KOG0553	304	consensus TPR repeat-containing protein [General f	99.85
KOG4234	271	consensus TPR repeat-containing protein [General f	99.85
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.82
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.79
KOG0552	226	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.77
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.75
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.74
TIGR03516	177	ppisom_GldI peptidyl-prolyl isomerase, gliding mot	99.74
PRK11570	206	peptidyl-prolyl cis-trans isomerase; Provisional	99.71
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.7
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.69
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.69
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.68
PF00254	94	FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomer	99.65
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.63
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.61
PRK10902	269	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.6
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	99.55
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.55
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.51
PRK15359	144	type III secretion system chaperone protein SscB;	99.49
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.42
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.4
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.38
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	99.38
PRK15095	156	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.36
COG1047	174	SlpA FKBP-type peptidyl-prolyl cis-trans isomerase	99.36
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.35
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.27
PRK10737	196	FKBP-type peptidyl-prolyl cis-trans isomerase; Pro	99.25
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.2
PRK11189	296	lipoprotein NlpI; Provisional	99.19
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.18
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.15
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.13
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.11
KOG1126	638	consensus DNA-binding cell division cycle control	99.06
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.06
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.05
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.04
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.02
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	99.0
PRK15331	165	chaperone protein SicA; Provisional	99.0
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.99
PRK15359	144	type III secretion system chaperone protein SscB;	98.98
KOG4555	175	consensus TPR repeat-containing protein [Function	98.98
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.96
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.96
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.95
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.95
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.93
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.93
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	98.93
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.91
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.9
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	98.89
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.89
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.88
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.88
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.88
PRK12370	553	invasion protein regulator; Provisional	98.87
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.87
KOG0553	304	consensus TPR repeat-containing protein [General f	98.87
PRK12370	553	invasion protein regulator; Provisional	98.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.86
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.85
PF13371	73	TPR_9: Tetratricopeptide repeat	98.83
PRK01490	435	tig trigger factor; Provisional	98.83
PRK11189	296	lipoprotein NlpI; Provisional	98.83
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.79
PRK10803	263	tol-pal system protein YbgF; Provisional	98.79
KOG1126	638	consensus DNA-binding cell division cycle control	98.78
KOG1125	579	consensus TPR repeat-containing protein [General f	98.77
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.77
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.74
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.74
PF13512	142	TPR_18: Tetratricopeptide repeat	98.73
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.73
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.72
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.7
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.69
PLN02789	320	farnesyltranstransferase	98.68
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.66
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.64
KOG2076	895	consensus RNA polymerase III transcription factor	98.64
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.63
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.62
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.61
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.61
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.6
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.6
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.59
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.59
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.59
KOG1310	758	consensus WD40 repeat protein [General function pr	98.58
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.57
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.57
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.55
PLN02789	320	farnesyltranstransferase	98.54
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.53
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.53
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.52
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.52
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.47
KOG2003	840	consensus TPR repeat-containing protein [General f	98.45
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.44
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.44
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.43
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.43
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.43
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.39
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.39
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.36
PRK14574	822	hmsH outer membrane protein; Provisional	98.36
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.36
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.35
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.34
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.33
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.3
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.27
PF13371	73	TPR_9: Tetratricopeptide repeat	98.27
TIGR00115	408	tig trigger factor. Trigger factor is a ribosome-a	98.26
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	98.23
KOG1125	579	consensus TPR repeat-containing protein [General f	98.22
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.21
PF12688	120	TPR_5: Tetratrico peptide repeat	98.21
KOG1129	478	consensus TPR repeat-containing protein [General f	98.2
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.15
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	98.14
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.13
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.12
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	98.12
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.11
PRK01490	435	tig trigger factor; Provisional	98.1
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.1
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.1
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.09
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.08
PRK14574	822	hmsH outer membrane protein; Provisional	98.07
PF03704	146	BTAD: Bacterial transcriptional activator domain;	98.06
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.05
KOG2076	895	consensus RNA polymerase III transcription factor	98.05
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.02
KOG1129	478	consensus TPR repeat-containing protein [General f	98.01
PRK10803	263	tol-pal system protein YbgF; Provisional	98.0
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.0
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.99
PF13431	34	TPR_17: Tetratricopeptide repeat	97.97
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.97
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	97.96
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.96
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.94
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.93
COG0544	441	Tig FKBP-type peptidyl-prolyl cis-trans isomerase	97.91
KOG4234	271	consensus TPR repeat-containing protein [General f	97.9
PF13428	44	TPR_14: Tetratricopeptide repeat	97.9
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.89
KOG1586	288	consensus Protein required for fusion of vesicles	97.89
PF12688	120	TPR_5: Tetratrico peptide repeat	97.87
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.85
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.83
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	97.82
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.81
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.8
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.8
PRK11906	458	transcriptional regulator; Provisional	97.78
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.76
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	97.73
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.72
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.69
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.69
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	97.65
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.64
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.59
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.59
PF13428	44	TPR_14: Tetratricopeptide repeat	97.59
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.58
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.57
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	97.56
KOG4555	175	consensus TPR repeat-containing protein [Function	97.56
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.54
PRK10941	269	hypothetical protein; Provisional	97.54
KOG2003	840	consensus TPR repeat-containing protein [General f	97.53
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.51
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.5
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.49
PRK15331	165	chaperone protein SicA; Provisional	97.43
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.41
PF13512	142	TPR_18: Tetratricopeptide repeat	97.39
KOG4507	886	consensus Uncharacterized conserved protein, conta	97.39
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.36
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.34
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.33
KOG3364	149	consensus Membrane protein involved in organellar	97.32
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.31
PRK11906	458	transcriptional regulator; Provisional	97.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.29
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.28
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.22
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.2
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.15
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.12
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.05
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	97.05
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	97.01
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.01
KOG0495	913	consensus HAT repeat protein [RNA processing and m	96.93
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.92
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	96.9
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.89
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.89
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.85
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.8
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.76
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.74
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.68
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.67
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.66
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.62
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.58
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.57
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.49
KOG1586	288	consensus Protein required for fusion of vesicles	96.44
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.39
PF13431	34	TPR_17: Tetratricopeptide repeat	96.34
KOG2376	652	consensus Signal recognition particle, subunit Srp	96.33
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.28
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.24
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	96.23
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.11
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.1
KOG2471	696	consensus TPR repeat-containing protein [General f	96.1
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.1
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.08
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.03
KOG1585	308	consensus Protein required for fusion of vesicles	95.99
COG2912	269	Uncharacterized conserved protein [Function unknow	95.97
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.79
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.75
KOG1585	308	consensus Protein required for fusion of vesicles	95.67
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.63
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.63
PF10952	140	DUF2753: Protein of unknown function (DUF2753); In	95.59
PRK04841	903	transcriptional regulator MalT; Provisional	95.49
KOG4507	886	consensus Uncharacterized conserved protein, conta	95.44
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	95.44
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.41
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.29
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.29
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.26
PLN03218	1060	maturation of RBCL 1; Provisional	95.13
COG3629	280	DnrI DNA-binding transcriptional activator of the	95.12
KOG4340	459	consensus Uncharacterized conserved protein [Funct	95.11
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.06
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	95.01
PLN03218	1060	maturation of RBCL 1; Provisional	94.99
PRK04841	903	transcriptional regulator MalT; Provisional	94.93
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	94.92
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	94.91
COG3947	361	Response regulator containing CheY-like receiver a	94.9
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	94.85
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.81
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	94.66
COG4700	251	Uncharacterized protein conserved in bacteria cont	94.43
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	94.41
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	94.39
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.32
KOG4814	872	consensus Uncharacterized conserved protein [Funct	94.32
PF03704	146	BTAD: Bacterial transcriptional activator domain;	94.31
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.14
PLN03077	857	Protein ECB2; Provisional	94.06
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.01
KOG2300	629	consensus Uncharacterized conserved protein [Funct	94.01
PLN03077	857	Protein ECB2; Provisional	93.89
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.68
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	93.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.52
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	93.52
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.11
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	93.09
KOG3364	149	consensus Membrane protein involved in organellar	93.02
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	92.97
cd02681	76	MIT_calpain7_1 MIT: domain contained within Microt	92.49
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.42
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	92.25
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	91.94
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.81
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	91.67
COG5191	435	Uncharacterized conserved protein, contains HAT (H	91.58
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	91.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	91.35
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.35
PRK10941	269	hypothetical protein; Provisional	91.13
KOG2796	366	consensus Uncharacterized conserved protein [Funct	91.07
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	91.06
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	90.94
KOG2471	696	consensus TPR repeat-containing protein [General f	90.89
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	90.84
KOG2422	665	consensus Uncharacterized conserved protein [Funct	90.78
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	90.77
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.33
KOG2300	629	consensus Uncharacterized conserved protein [Funct	90.16
cd02677	75	MIT_SNX15 MIT: domain contained within Microtubule	90.13
cd02684	75	MIT_2 MIT: domain contained within Microtubule Int	90.05
PF04212	69	MIT: MIT (microtubule interacting and transport) d	89.76
cd02678	75	MIT_VPS4 MIT: domain contained within Microtubule	89.59
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	89.54
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.52
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.37
cd02679	79	MIT_spastin MIT: domain contained within Microtubu	89.01
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	88.92
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	88.69
cd02656	75	MIT MIT: domain contained within Microtubule Inter	88.57
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.56
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.49
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	88.45
KOG2610	491	consensus Uncharacterized conserved protein [Funct	88.39
KOG1497	399	consensus COP9 signalosome, subunit CSN4 [Posttran	87.9
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	87.71
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	87.55
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	87.4
cd02680	75	MIT_calpain7_2 MIT: domain contained within Microt	87.13
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	86.59
PHA02537	230	M terminase endonuclease subunit; Provisional	86.44
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	86.36
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.33
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	86.08
smart00745	77	MIT Microtubule Interacting and Trafficking molecu	85.64
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	85.56
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	85.34
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.15
KOG2047	835	consensus mRNA splicing factor [RNA processing and	84.11
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	83.7
KOG0529	421	consensus Protein geranylgeranyltransferase type I	83.07
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	82.83
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	82.82
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.74
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	82.68
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	82.63
KOG2581	493	consensus 26S proteasome regulatory complex, subun	82.27
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	81.53
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	81.36
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	81.28
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.26
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	81.26
COG3898	531	Uncharacterized membrane-bound protein [Function u	80.92
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.86
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.57
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	80.48
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	80.2

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.9e-66  Score=504.44  Aligned_cols=354  Identities=50%  Similarity=0.814  Sum_probs=334.3

Q ss_pred             ccccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCC
Q 008689          162 EGEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSA  238 (557)
Q Consensus       162 ~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~  238 (557)
                      +|+|+.+|..|+.|.+||++++.+|+.|+++   +|+.|.+|.|+++.||..++.+|+.              |+.+.| 
T Consensus         2 eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~p-   66 (397)
T KOG0543|consen    2 EGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRDGDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGSP-   66 (397)
T ss_pred             CCCCccCCCCCceeEEEEeEEecCCeecccccCCCceeeecCCCccccccccccccccc--------------cccCCC-
Confidence            6888999999999999999999999999988   5899999999999999999999998              666665 


Q ss_pred             CCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCCC-CCCCCCCCEEEEEEEEEecCCcEEEecCCCCCccc
Q 008689          239 SGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQL  317 (557)
Q Consensus       239 ~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~g-~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~  317 (557)
                          +.||++++|.|+|+|.          |++|+|+|+++|.| ..+|..|..|+|||.+.+.|+ +|+++..     .
T Consensus        67 ----p~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~-----~  126 (397)
T KOG0543|consen   67 ----PKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQREL-----R  126 (397)
T ss_pred             ----CCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceecccc-----c
Confidence                7899999999999998          89999999999999 789999999999999999988 7776543     3


Q ss_pred             EEEEcCc-cchhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee-ecccccCCChHHH
Q 008689          318 FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE-KEKESWDMNTEEK  395 (557)
Q Consensus       318 ~~~~lg~-~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~-~~~~~~~~~~~e~  395 (557)
                      |+|.+|+ ..+|.||++||++|++||+|.|+|+|+|+||..+..  .+.|||++++.|+|+|++|. +....|.+..+++
T Consensus       127 fe~~~Ge~~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~--~p~IPPnA~l~yEVeL~~f~~~~~~s~~~~~~e~  204 (397)
T KOG0543|consen  127 FEFGEGEDIDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE--PPLIPPNATLLYEVELLDFELKEDESWKMFAEER  204 (397)
T ss_pred             eEEecCCccchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC--CCCCCCCceEEEEEEEEeeecCcccccccchHHH
Confidence            8889999 689999999999999999999999999999955433  36899999999999999999 8899999999999


Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      +..|...|+.||.+|+.++|..|+..|.+|++++.+....++++......+++.||+|+|.||+|+++|..|+.+|++||
T Consensus       205 l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvL  284 (397)
T KOG0543|consen  205 LEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVL  284 (397)
T ss_pred             HHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCC
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSD  552 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~~~  552 (557)
                      .++|+|+||+||+|+||+.+++|+.|+.+|++|++++|+|++++.+|.+|+++.++++++++++|++||.++...++
T Consensus       285 e~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~~~~~  361 (397)
T KOG0543|consen  285 ELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLAEESA  361 (397)
T ss_pred             hcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999986543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=8.2e-37  Score=275.37  Aligned_cols=278  Identities=26%  Similarity=0.368  Sum_probs=240.3

Q ss_pred             eCCcceeEEEEeCCCCC-CCCCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcE
Q 008689          267 TDDKKVIKKILKEGDGF-ERPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEV  343 (557)
Q Consensus       267 ~~d~~~~kkil~~G~g~-~~p~~~~~v~v~~~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~  343 (557)
                      +.-.++.|+||.+|.|. +.-.+|++|++||.+...+  ++++|+++.  .+.|+++++|.....+.||.+|++|+++|+
T Consensus         7 l~~~gv~Kril~~G~g~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk--~gkPmeiiiGkkFkL~VwE~il~tM~v~Ev   84 (329)
T KOG0545|consen    7 LNVEGVKKRILHGGTGELPEFIDGTRVIFHFRTLKCDEERTVIDDSRK--VGKPMEIIIGKKFKLEVWEIILTTMRVHEV   84 (329)
T ss_pred             ccchhhhHhhccCCCccCccccCCceEEEEEEecccCcccccccchhh--cCCCeEEeeccccccHHHHHHHHHHhhhhH
Confidence            34567899999999985 3455799999999998765  578998875  799999999999999999999999999999


Q ss_pred             EEEEEcCC----CccCCccc-------ccc------------c-----------cCCCCCceEEEEEEEeeeee----cc
Q 008689          344 ALLTIAPE----YAFGSAES-------QQE------------L-----------AVVPPNSTVHYEVELVSFEK----EK  385 (557)
Q Consensus       344 ~~v~i~~~----~~yg~~~~-------~~~------------~-----------~~ip~~~~l~~~ieL~~~~~----~~  385 (557)
                      +.|+|+..    |.|-+...       .+.            +           ..-....+|.|.++|..+..    ..
T Consensus        85 aqF~~d~~~~vqYPfvsksLRdia~GK~p~e~~~H~Cg~a~m~~~~glGyedLDeL~knPqpL~FviellqVe~P~qYq~  164 (329)
T KOG0545|consen   85 AQFWCDTIHTVQYPFVSKSLRDIAQGKDPTEWHRHCCGLANMFAYHGLGYEDLDELQKNPQPLVFVIELLQVEAPSQYQR  164 (329)
T ss_pred             HHhhhhhhheeechhHHHHHHHHhcCCCcchhhhhhhhhHHHHHhcCCChhhHHHHhhCCCceEeehhhhhccCchhhcc
Confidence            99988753    33322111       000            0           00012368999999998874    46


Q ss_pred             cccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhhHHHHHHhhh
Q 008689          386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLK  462 (557)
Q Consensus       386 ~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~  462 (557)
                      +.|.|+.++++..+..++++||.+|+.|+|.+|..+|..|+-.+.+..   ...+.++.++......+++|.|+|+++.+
T Consensus       165 e~WqlsddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~  244 (329)
T KOG0545|consen  165 ETWQLSDDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE  244 (329)
T ss_pred             ccccCCchHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH
Confidence            789999999999999999999999999999999999999998876543   34567999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYG  541 (557)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~~~~~~~~~~~~~~  541 (557)
                      +|-+++++|+.+|..+|.|+||||+||+|+..-.+..+|.++|.++|+++|.-+ .+..+|+.+..++++.++.++-.|+
T Consensus       245 e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~ek~~edr~~~~  324 (329)
T KOG0545|consen  245 EYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAEKQEEDRLRCR  324 (329)
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999875 7888999999999999999999999


Q ss_pred             HHhhh
Q 008689          542 NMFAK  546 (557)
Q Consensus       542 ~mf~~  546 (557)
                      +||+.
T Consensus       325 kmfs~  329 (329)
T KOG0545|consen  325 KMFSQ  329 (329)
T ss_pred             HhcCC
Confidence            99963

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3e-36  Score=293.66  Aligned_cols=351  Identities=36%  Similarity=0.545  Sum_probs=269.5

Q ss_pred             EcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCC
Q 008689           45 KEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS  124 (557)
Q Consensus        45 ~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~  124 (557)
                      ++|+|++.|..||.|.+||++++.||+.||+|.+ +.|+.|.+|.|.++.||..++..|+.              |+.+.
T Consensus         1 ~eg~g~~~p~~g~~v~~hytg~l~dgt~fdss~d-~~~~~~~lg~g~vi~~~~~gv~tm~~--------------g~~~~   65 (397)
T KOG0543|consen    1 KEGTGTETPMTGDKVEVHYTGTLLDGTKFDSSRD-GDPFKFDLGKGSVIKGWDLGVATMKK--------------GEAGS   65 (397)
T ss_pred             CCCCCccCCCCCceeEEEEeEEecCCeecccccC-CCceeeecCCCccccccccccccccc--------------cccCC
Confidence            4799999999999999999999999999999998 79999999999999999999999998              78888


Q ss_pred             CCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeecccc-ccCCCCCCeEEEEEEEEeCCCeEeeec-cceEEEecC-
Q 008689          125 PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKD-  201 (557)
Q Consensus       125 ~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g-~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~-  201 (557)
                      ++.+|++.++.|+|+++          |++++++++.+|.| ..+|..|..|.+||.+.+.++ +|+.+ ..+.|..|. 
T Consensus        66 pp~ip~~a~l~fe~el~----------Dg~iiKriir~G~gd~~~P~~g~~V~v~~~G~~~~~-~f~~~~~~fe~~~Ge~  134 (397)
T KOG0543|consen   66 PPKIPSNATLLFEVELL----------DGGIIKRIIREGEGDYSRPNKGAVVKVHLEGELEDG-VFDQRELRFEFGEGED  134 (397)
T ss_pred             CCCCCCCcceeeeeccc----------CCceEEeeeecCCCCCCCCCCCcEEEEEEEEEECCc-ceeccccceEEecCCc
Confidence            89999999999999997          88999999999998 899999999999999999888 66655 567888888 


Q ss_pred             CCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCC
Q 008689          202 GHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD  281 (557)
Q Consensus       202 ~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~  281 (557)
                      ..+|.||+.+|..|++||++.|+|+|+||||+.|..    .+.|||+++|.|+|+|++|....+-.              
T Consensus       135 ~~vi~Gle~al~~M~~GE~a~v~i~~~YayG~~~~~----~p~IPPnA~l~yEVeL~~f~~~~~~s--------------  196 (397)
T KOG0543|consen  135 IDVIEGLEIALRMMKVGEVALVTIDPKYAYGEEGGE----PPLIPPNATLLYEVELLDFELKEDES--------------  196 (397)
T ss_pred             cchhHHHHHHHHhcCccceEEEEeCcccccCCCCCC----CCCCCCCceEEEEEEEEeeecCcccc--------------
Confidence            479999999999999999999999999999955433    47899999999999999997322211              


Q ss_pred             CCCCCCCCCEEEEEEEEE-ecCCcEEEecCCCCCcccEEEEcCccc-hhhHHHHHHhccCcCcEEEEEEcCCCccCCccc
Q 008689          282 GFERPNEGAVVKVKLIGK-LQDGTVFVKKGHSEEEQLFEFKTDEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAES  359 (557)
Q Consensus       282 g~~~p~~~~~v~v~~~~~-l~~g~~~~~~~~~~~~~~~~~~lg~~~-vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~  359 (557)
                          -..++..++....+ .+.|+.+             |.-|+.. -+.-.++|+..          +..+..+..   
T Consensus       197 ----~~~~~~e~l~~A~~~ke~Gn~~-------------fK~gk~~~A~~~Yerav~~----------l~~~~~~~~---  246 (397)
T KOG0543|consen  197 ----WKMFAEERLEAADRKKERGNVL-------------FKEGKFKLAKKRYERAVSF----------LEYRRSFDE---  246 (397)
T ss_pred             ----cccchHHHHHHHHHHHHhhhHH-------------HhhchHHHHHHHHHHHHHH----------hhccccCCH---
Confidence                01111111111100 1122222             2233321 12223333322          211111000   


Q ss_pred             cccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH
Q 008689          360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE  439 (557)
Q Consensus       360 ~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~  439 (557)
                                                   +......-.....+.+.+..+.+.++|..|+...+++|.+.+.+..     
T Consensus       247 -----------------------------ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K-----  292 (397)
T KOG0543|consen  247 -----------------------------EEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK-----  292 (397)
T ss_pred             -----------------------------HHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh-----
Confidence                                         0000111123456778999999999999999999999999876553     


Q ss_pred             HHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhCC
Q 008689          440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEIDP  513 (557)
Q Consensus       440 ~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l~p  513 (557)
                                .++.+|.|++.+++|+.|+.++++|++++|+|-.+...+..+..+..++.+. .+.|.+.+..-+
T Consensus       293 ----------ALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k~~  357 (397)
T KOG0543|consen  293 ----------ALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMFAKLA  357 (397)
T ss_pred             ----------HHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence                      4889999999999999999999999999999977777778777777776655 777777776544

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=4.3e-29  Score=216.19  Aligned_cols=169  Identities=32%  Similarity=0.474  Sum_probs=140.4

Q ss_pred             EEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeec---cccccccceeeeeee
Q 008689           85 FTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV---KDICKDGGIIKKILK  161 (557)
Q Consensus        85 ~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~---~d~~~d~~~~~~i~~  161 (557)
                      |.+|.+.+|+|.+.+|.||+.|+++++.+||+++||..+..    .-..+++.+.++.+...   ........+...+..
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~I~v~~   76 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG----DLNILVITILLVLLFRASAAEKWNPDEELQIGVLK   76 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc----cccceEEEeeeeehhhhhhhhhcCCCCceeEEEEE
Confidence            45788899999999999999999999999999999965543    11245566665554332   223344555554444


Q ss_pred             c-cccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCC
Q 008689          162 E-GEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGK  236 (557)
Q Consensus       162 ~-g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~  236 (557)
                      . .......+.||.+++||++.+.||+.||+|    +|+.|.+|.|++|+||+.+|.+|++||++++.|||++|||++|.
T Consensus        77 ~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~LgYG~~G~  156 (188)
T KOG0549|consen   77 KPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYSRGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHLGYGERGA  156 (188)
T ss_pred             CCccccccccCCCEEEEEEEEEecCCCEEeeeccCCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccccCccCCC
Confidence            4 335678889999999999999999999998    79999999999999999999999999999999999999999998


Q ss_pred             CCCCCCCCCCCCCeEEEEEEeecccc
Q 008689          237 SASGNEGAVPPNATLQIALELVSWKT  262 (557)
Q Consensus       237 ~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (557)
                      +     +.||++++|+|+|+|+.+..
T Consensus       157 ~-----~~IP~~A~LiFdiELv~i~~  177 (188)
T KOG0549|consen  157 P-----PKIPGDAVLIFDIELVKIER  177 (188)
T ss_pred             C-----CCCCCCeeEEEEEEEEEeec
Confidence            7     56999999999999999864

>KOG0549 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.1e-27  Score=203.90  Aligned_cols=176  Identities=28%  Similarity=0.470  Sum_probs=142.7

Q ss_pred             EEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc---eeeeeCCccee
Q 008689          197 FTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT---VSEITDDKKVI  273 (557)
Q Consensus       197 ~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~---~~d~~~d~~~~  273 (557)
                      |++|.+.+++|++.+|.+|+.|+++++++||+++||..+..         .-..++|.+.++.+..   ......+..+.
T Consensus         1 ~~~g~~~vi~gm~~~~~g~c~ge~rkvv~pp~l~fg~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~   71 (188)
T KOG0549|consen    1 FTLGQGFVIPGMDQALEGMCNGEKRKVVIPPHLGFGEGGRG---------DLNILVITILLVLLFRASAAEKWNPDEELQ   71 (188)
T ss_pred             CcccceEEecCHHHHhhhhhccccceeccCCcccccccccc---------cccceEEEeeeeehhhhhhhhhcCCCCcee
Confidence            35788999999999999999999999999999999955442         2234566666555432   12222334443


Q ss_pred             EEEEeCC-CCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEEcCCC
Q 008689          274 KKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEY  352 (557)
Q Consensus       274 kkil~~G-~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~  352 (557)
                      -.+++.= .+..+...|+.+++||++.++||+.||+++.  +++|++|+||.++||+|||++|..||+||+..++|||++
T Consensus        72 I~v~~~p~~C~~kak~GD~l~~HY~g~leDGt~fdSS~~--rg~P~~f~LG~gqVIkG~Dqgl~gMCvGEkRkl~IPp~L  149 (188)
T KOG0549|consen   72 IGVLKKPEECPEKAKKGDTLHVHYTGSLEDGTKFDSSYS--RGAPFTFTLGTGQVIKGWDQGLLGMCVGEKRKLIIPPHL  149 (188)
T ss_pred             EEEEECCccccccccCCCEEEEEEEEEecCCCEEeeecc--CCCCEEEEeCCCceeccHhHHhhhhCcccceEEecCccc
Confidence            3333331 2556788899999999999999999999874  789999999999999999999999999999999999999


Q ss_pred             ccCCccccccccCCCCCceEEEEEEEeeeeeccc
Q 008689          353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE  386 (557)
Q Consensus       353 ~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~  386 (557)
                      +||+.|.++   .||++++|+|+|||..+.....
T Consensus       150 gYG~~G~~~---~IP~~A~LiFdiELv~i~~~~~  180 (188)
T KOG0549|consen  150 GYGERGAPP---KIPGDAVLIFDIELVKIERGPP  180 (188)
T ss_pred             cCccCCCCC---CCCCCeeEEEEEEEEEeecCCC
Confidence            999999865   4999999999999999986544

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=9.6e-27  Score=176.73  Aligned_cols=106  Identities=58%  Similarity=1.029  Sum_probs=103.4

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCc
Q 008689           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (557)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~  117 (557)
                      |+.+.++.+|+|...|+.||.|++||++.+.||+.||||.+++.|+.|.+|.|.+|.||++++..|.+|++++++|+|++
T Consensus         2 Gv~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd~   81 (108)
T KOG0544|consen    2 GVEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSRDRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPDY   81 (108)
T ss_pred             CceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeecccccCCCeeEEecCcceeechhhcchhccccccceeeecccc
Confidence            68899999999988999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      |||..+.+..||||++|+|+|||+++
T Consensus        82 aYG~~G~p~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   82 AYGPRGHPGGIPPNATLVFDVELLKV  107 (108)
T ss_pred             ccCCCCCCCccCCCcEEEEEEEEEec
Confidence            99999999999999999999999986

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.6e-26  Score=205.29  Aligned_cols=108  Identities=57%  Similarity=0.977  Sum_probs=104.6

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      .+.++|+.|++++.|+| ..|+.+|.|.+||++++.||++||||+++++|+.|.||  ++|+||.+||.+|++|++++++
T Consensus        97 ~~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~  173 (205)
T COG0545          97 KTLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLT  173 (205)
T ss_pred             eECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEE
Confidence            45899999999999999 99999999999999999999999999999999999999  9999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      |||++|||..+.++.||||++|+|+|+|+++
T Consensus       174 IP~~laYG~~g~~g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         174 IPPELAYGERGVPGVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             eCchhccCcCCCCCCCCCCCeEEEEEEEEec
Confidence            9999999999988889999999999999986

>KOG0544 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.1e-24  Score=165.48  Aligned_cols=105  Identities=38%  Similarity=0.655  Sum_probs=98.8

Q ss_pred             eeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEEcCC
Q 008689          272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPE  351 (557)
Q Consensus       272 ~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~  351 (557)
                      +-+.+|.+|+|...|..|++|++||++.|.||+.||++.  +++.||+|.+|.++||.||+.++..|.+||++.++|+|+
T Consensus         3 v~~~~i~~Gdg~tfpK~Gqtvt~hYtg~L~dG~kfDSs~--dr~kPfkf~IGkgeVIkGwdegv~qmsvGekakLti~pd   80 (108)
T KOG0544|consen    3 VEKQVISPGDGRTFPKKGQTVTVHYTGTLQDGKKFDSSR--DRGKPFKFKIGKGEVIKGWDEGVAQMSVGEKAKLTISPD   80 (108)
T ss_pred             ceeEEeeCCCCcccCCCCCEEEEEEEeEecCCcEeeccc--ccCCCeeEEecCcceeechhhcchhccccccceeeeccc
Confidence            668899999999999999999999999999999999876  588999999999999999999999999999999999999


Q ss_pred             CccCCccccccccCCCCCceEEEEEEEeee
Q 008689          352 YAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (557)
Q Consensus       352 ~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~  381 (557)
                      |+||..|.+   ..||||++|.|+|||+.+
T Consensus        81 ~aYG~~G~p---~~IppNatL~FdVEll~v  107 (108)
T KOG0544|consen   81 YAYGPRGHP---GGIPPNATLVFDVELLKV  107 (108)
T ss_pred             cccCCCCCC---CccCCCcEEEEEEEEEec
Confidence            999999843   589999999999999875

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.88  E-value=4e-22  Score=184.63  Aligned_cols=108  Identities=46%  Similarity=0.776  Sum_probs=103.4

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.+++|+.|.+|  ++++||+++|.+|++|++++|+
T Consensus        98 ~~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~  174 (206)
T PRK11570         98 NSTESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELT  174 (206)
T ss_pred             EECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEE
Confidence            45899999999999999 88999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      |||++|||..+.++.|||+++|+|+|+|++|
T Consensus       175 IP~~lAYG~~g~~~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        175 IPHELAYGERGAGASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             ECHHHcCCCCCCCCCcCCCCeEEEEEEEEEE
Confidence            9999999999988899999999999999987

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.87  E-value=1.9e-21  Score=175.65  Aligned_cols=110  Identities=35%  Similarity=0.511  Sum_probs=102.8

Q ss_pred             eecCCCeEEEEEEc--ccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEE
Q 008689           33 EIGNQGLKKKLVKE--GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (557)
Q Consensus        33 ~~~~~g~~~~~~~~--G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~  110 (557)
                      ..+++|++|.++++  |+| ..|+.||.|.+||++++.||++|++++.. .|+.|.+|.+++++||+++|.+|++||+++
T Consensus        65 ~~t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~-~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~  142 (177)
T TIGR03516        65 ETSQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEEL-GPQTYKVDQQDLFSGLRDGLKLMKEGETAT  142 (177)
T ss_pred             eECCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCC-CCEEEEeCCcchhHHHHHHHcCCCCCCEEE
Confidence            45889999999976  666 78999999999999999999999999874 699999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       111 v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |+|||++|||..+.+..||+|++|+|+|+|+++.
T Consensus       143 ~~iP~~~AYG~~g~~~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       143 FLFPSHKAYGYYGDQNKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             EEECHHHcCCCCCCCCCcCcCCcEEEEEEEEEec
Confidence            9999999999999888999999999999999985

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.87  E-value=1e-21  Score=179.62  Aligned_cols=107  Identities=50%  Similarity=0.879  Sum_probs=102.7

Q ss_pred             ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceE-EEccCCcccHHHHHHHcccccccEEEE
Q 008689           34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFK-FTLGQGNVIKGWDIGIKTMKKGENAVF  111 (557)
Q Consensus        34 ~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~-~~lg~~~~~~gl~~~l~gm~~Ge~~~v  111 (557)
                      +.++||+|+.++.|+| +.+..|+.|.+||.+++. +|++||++... .|+. |.+|.+.+|+||+.++.||++|++|+|
T Consensus       117 tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~-kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv  194 (226)
T KOG0552|consen  117 TLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGG-KPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV  194 (226)
T ss_pred             ecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCC-CCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence            5899999999999999 999999999999999998 99999999874 8999 999999999999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      +|||++|||..+.+ .||||++|+|+|+|+.+
T Consensus       195 iIPp~lgYg~~g~~-~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  195 IIPPELGYGKKGVP-EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EeCccccccccCcC-cCCCCCcEEEEEEEEec
Confidence            99999999999987 89999999999999876

>COG0545 FkpA FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=2.5e-21  Score=172.30  Aligned_cols=103  Identities=34%  Similarity=0.585  Sum_probs=96.3

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v  225 (557)
                      ...+++.++++..|+| ..|..++.|++||++++.+|++||+|    +|+.|.+|  ++|+||.+||.+|++|++++++|
T Consensus        98 ~~~sgl~y~~~~~G~G-~~~~~~~~V~vhY~G~l~~G~vFDsS~~rg~p~~f~l~--~vI~Gw~egl~~M~vG~k~~l~I  174 (205)
T COG0545          98 TLPSGLQYKVLKAGDG-AAPKKGDTVTVHYTGTLIDGTVFDSSYDRGQPAEFPLG--GVIPGWDEGLQGMKVGGKRKLTI  174 (205)
T ss_pred             ECCCCcEEEEEeccCC-CCCCCCCEEEEEEEEecCCCCccccccccCCCceeecC--CeeehHHHHHhhCCCCceEEEEe
Confidence            4678899999999988 88999999999999999999999997    78888888  99999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      ||++|||..|.+     +.||||++|+|+|+|+++
T Consensus       175 P~~laYG~~g~~-----g~Ippns~LvFeVeLl~v  204 (205)
T COG0545         175 PPELAYGERGVP-----GVIPPNSTLVFEVELLDV  204 (205)
T ss_pred             CchhccCcCCCC-----CCCCCCCeEEEEEEEEec
Confidence            999999999976     569999999999999986

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=3.6e-21  Score=181.09  Aligned_cols=125  Identities=33%  Similarity=0.441  Sum_probs=119.7

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (557)
                      +....|+.+|.+||.+++.++|++|+.+|.+||.+.|.++.+               |+|+|++|.++|+|+.|+++|..
T Consensus        76 e~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVy---------------ycNRAAAy~~Lg~~~~AVkDce~  140 (304)
T KOG0553|consen   76 EDKALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVY---------------YCNRAAAYSKLGEYEDAVKDCES  140 (304)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchH---------------HHHHHHHHHHhcchHHHHHHHHH
Confidence            678899999999999999999999999999999999998877               99999999999999999999999


Q ss_pred             HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       474 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                      +|.+||.++|+|-|+|.||+.+|+|++|++.|++||.|+|+|...+..|..+..++.+..
T Consensus       141 Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  141 ALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            999999999999999999999999999999999999999999999999998888876655

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=1.4e-20  Score=165.73  Aligned_cols=143  Identities=34%  Similarity=0.493  Sum_probs=127.6

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (557)
                      ..+..+..+|..||.+|+.|+|..|...|..||.++|....          ..+..||.|+|+|.+|++.|+.|+..|.+
T Consensus        90 k~~~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~----------e~rsIly~Nraaa~iKl~k~e~aI~dcsK  159 (271)
T KOG4234|consen   90 KAIEKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST----------EERSILYSNRAAALIKLRKWESAIEDCSK  159 (271)
T ss_pred             HHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH----------HHHHHHHhhhHHHHHHhhhHHHHHHHHHh
Confidence            34788999999999999999999999999999999986542          56788899999999999999999999999


Q ss_pred             HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT  549 (557)
Q Consensus       474 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~  549 (557)
                      +|+++|.+.||+.|||.+|.++.+|++|+++|++.++++|.+..++....++..++.+++++.+.   .|+.+++.
T Consensus       160 aiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ernEkmKe---e~m~kLKd  232 (271)
T KOG4234|consen  160 AIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINERNEKMKE---EMMEKLKD  232 (271)
T ss_pred             hHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHHHHHHH---HHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888777765443   34444443

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.82  E-value=1.2e-19  Score=174.11  Aligned_cols=109  Identities=50%  Similarity=0.880  Sum_probs=102.5

Q ss_pred             ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEe
Q 008689           34 IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI  113 (557)
Q Consensus        34 ~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~i  113 (557)
                      .+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.++  +++|||+++|.+|++|++++|+|
T Consensus       143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l~--~vipG~~EaL~~Mk~Gek~~l~I  219 (269)
T PRK10902        143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLVI  219 (269)
T ss_pred             ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEecC--CcchHHHHHHhcCCCCcEEEEEE
Confidence            4899999999999999 78999999999999999999999999988889999986  69999999999999999999999


Q ss_pred             cCCcccCCCCCCCCCCCCCcEEEEEEEEEeeec
Q 008689          114 PPELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (557)
Q Consensus       114 p~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~  146 (557)
                      |++++||..+.+ .||+|++++|+|+|+++...
T Consensus       220 P~~laYG~~g~~-gIppns~LvfeVeLl~V~~~  251 (269)
T PRK10902        220 PPELAYGKAGVP-GIPANSTLVFDVELLDVKPA  251 (269)
T ss_pred             CchhhCCCCCCC-CCCCCCcEEEEEEEEEeccC
Confidence            999999999865 69999999999999999753

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.79  E-value=8.6e-19  Score=143.47  Aligned_cols=93  Identities=56%  Similarity=0.979  Sum_probs=87.1

Q ss_pred             CcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCC-CCC
Q 008689           49 GWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPT  127 (557)
Q Consensus        49 G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~-~~~  127 (557)
                      |.++|+.||.|.|||++++.+|++|++++..+.|+.|.+|.+++++||++||.+|++|++++|.|||+++||+.+. +..
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~~~   80 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQEGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEPPK   80 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTTTTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCTTT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeeecCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCCCC
Confidence            4467999999999999999999999999877799999999999999999999999999999999999999999987 457


Q ss_pred             CCCCCcEEEEEEEE
Q 008689          128 IPPNATLQFDVELL  141 (557)
Q Consensus       128 ip~~~~l~~~v~l~  141 (557)
                      ||++++++|+|+|+
T Consensus        81 ip~~~~l~f~Iell   94 (94)
T PF00254_consen   81 IPPNSTLVFEIELL   94 (94)
T ss_dssp             BTTTSEEEEEEEEE
T ss_pred             cCCCCeEEEEEEEC
Confidence            99999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0552 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.8e-18  Score=157.15  Aligned_cols=105  Identities=30%  Similarity=0.473  Sum_probs=98.3

Q ss_pred             cccccceeeeeeeccccccCCCCCCeEEEEEEEEeC-CCeEeeec---cceE-EEecCCCCCchHHHHHhhccCCcEEEE
Q 008689          149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLE-DGMVVGKA---DGVE-FTVKDGHFCPTLAKAVKTMKKGEKVLL  223 (557)
Q Consensus       149 ~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~-~~~g~~~~~~gl~~~l~~m~~Ge~~~i  223 (557)
                      .+..+++.+..+..|.| ..+..|++|.++|.+++. .|++|+++   .|+. |.+|.+++|+||+.++.+|++|.+++|
T Consensus       116 ~tl~~Gl~y~D~~vG~G-~~a~~G~rV~v~Y~Gkl~~~GkvFd~~~~~kp~~~f~lg~g~VIkG~d~gv~GMkvGGkRrv  194 (226)
T KOG0552|consen  116 RTLPGGLRYEDLRVGSG-PSAKKGKRVSVRYIGKLKGNGKVFDSNFGGKPFKLFRLGSGEVIKGWDVGVEGMKVGGKRRV  194 (226)
T ss_pred             eecCCCcEEEEEEecCC-CCCCCCCEEEEEEEEEecCCCeEeecccCCCCccccccCCCCCCchHHHhhhhhccCCeeEE
Confidence            45678899999999997 999999999999999999 89999987   8888 999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       224 ~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      +|||++|||..|.+      .||||+||+|+|+|+.+
T Consensus       195 iIPp~lgYg~~g~~------~IppnstL~fdVEL~~v  225 (226)
T KOG0552|consen  195 IIPPELGYGKKGVP------EIPPNSTLVFDVELLSV  225 (226)
T ss_pred             EeCccccccccCcC------cCCCCCcEEEEEEEEec
Confidence            99999999999885      89999999999999875

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.75  E-value=3.3e-18  Score=151.68  Aligned_cols=133  Identities=23%  Similarity=0.350  Sum_probs=98.9

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~  131 (557)
                      .++.|+.|.+||++++.||++|++|+..+.|+.|.+|.+++++||++||.||++|++++|.|||++|||+++        
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d--------   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS--------   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            578999999999999999999999987679999999999999999999999999999999999999999887        


Q ss_pred             CcEEEEEEEEEeeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008689          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (557)
Q Consensus       132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (557)
                      ..++..+....+...... ..+.........|.   +...-..++.|++|+||++++.++.+.-+
T Consensus        76 ~~~v~~vp~~~f~~~~~~-~~G~~~~~~~~~G~~~~~~V~~i~~~~v~vD~NHPLAGk~L~f~v~  139 (156)
T PRK15095         76 PDLIQYFSRRDFMDAGEP-EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIE  139 (156)
T ss_pred             hHHEEEecHHHCCcccCC-CCCCEEEEECCCCCEEEEEEEEEcCCEEEEECCCcCCCCEEEEEEE
Confidence            445555554444321111 11111100011121   11233355899999999999999877653

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=6.4e-18  Score=148.15  Aligned_cols=134  Identities=28%  Similarity=0.409  Sum_probs=101.4

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~  131 (557)
                      ++..||.|+++|++++.||++||+|.....|+.|++|.|++++||++||.||.+|++.+|.|||+.|||+++        
T Consensus         2 ~i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~--------   73 (174)
T COG1047           2 KIEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD--------   73 (174)
T ss_pred             cccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC--------
Confidence            467899999999999999999999987568999999999999999999999999999999999999999987        


Q ss_pred             CcEEEEEEEEEeeeccccccccceeeeeeecc-----ccccCCCCCCeEEEEEEEEeCCCeEeeeccceEE
Q 008689          132 ATLQFDVELLSWTSVKDICKDGGIIKKILKEG-----EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEF  197 (557)
Q Consensus       132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g-----~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~  197 (557)
                      ..++-.+..-.|....++..  +.  ++...+     .+..+...++.|+++|||+|++.++.++-+-..+
T Consensus        74 ~~lvq~vp~~~F~~~~~~~v--Gm--~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~feveVv~v  140 (174)
T COG1047          74 PDLVQRVPRDEFQGVGELEV--GM--EVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFEVEVVEV  140 (174)
T ss_pred             hHHeEEecHHHhCcCCCCCC--Cc--EEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEEEEEEEE
Confidence            44554444444433211110  10  111111     1223444568999999999999999887654444

>TIGR03516 ppisom_GldI peptidyl-prolyl isomerase, gliding motility-associated

Probab=99.74  E-value=1.6e-17  Score=150.15  Aligned_cols=105  Identities=23%  Similarity=0.339  Sum_probs=93.7

Q ss_pred             cccceeeeeeec--cccccCCCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689          151 KDGGIIKKILKE--GEKWENPKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (557)
Q Consensus       151 ~d~~~~~~i~~~--g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v  225 (557)
                      ...++.+.++..  |++ ..|..||.|++||.+++.+|++++++   .|..|.+|.+++++||+++|.+|++||++++.|
T Consensus        67 t~sGl~Y~v~~~~~g~g-~~p~~gd~V~v~Y~~~~~dG~v~~ss~~~~P~~f~vg~~~vi~Gl~e~L~~Mk~Ge~~~~~i  145 (177)
T TIGR03516        67 SQNGFWYYYNQKDTGEG-TTPEFGDLVTFEYDIRALDGDVIYSEEELGPQTYKVDQQDLFSGLRDGLKLMKEGETATFLF  145 (177)
T ss_pred             CCCccEEEEEEecCCCC-CcCCCCCEEEEEEEEEeCCCCEEEeCCCCCCEEEEeCCcchhHHHHHHHcCCCCCCEEEEEE
Confidence            345666766655  444 67899999999999999999999987   589999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      ||++|||..|.+     ..||||++|+|+|+|+++.
T Consensus       146 P~~~AYG~~g~~-----~~Ippns~L~f~IeL~~i~  176 (177)
T TIGR03516       146 PSHKAYGYYGDQ-----NKIGPNLPIISTVTLLNIK  176 (177)
T ss_pred             CHHHcCCCCCCC-----CCcCcCCcEEEEEEEEEec
Confidence            999999998865     6899999999999999984

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldI is a FKBP-type peptidyl-prolyl cis-trans isomerase (pfam00254) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockout of this gene abolishes the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. This family is only found in Bacteroidetes containing the suite of genes proposed to confer the gliding motility phenotype.

>PRK11570 peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.71  E-value=5.4e-17  Score=150.46  Aligned_cols=103  Identities=30%  Similarity=0.536  Sum_probs=94.7

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v  225 (557)
                      ..+.++.+++++.|+| ..|..++.|++||.+++++|++|+++    +|..|.++  ++++||+++|.+|++|+++.++|
T Consensus        99 ~t~sGl~y~vi~~G~G-~~p~~~d~V~v~Y~g~l~dG~vfdss~~~g~P~~f~l~--~vipG~~eaL~~M~~G~k~~~~I  175 (206)
T PRK11570         99 STESGLQFRVLTQGEG-AIPARTDRVRVHYTGKLIDGTVFDSSVARGEPAEFPVN--GVIPGWIEALTLMPVGSKWELTI  175 (206)
T ss_pred             ECCCCcEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCEEEeccCCCCCeEEEee--chhhHHHHHHcCCCCCCEEEEEE
Confidence            3567889999999999 68999999999999999999999987    68888885  69999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      ||++|||+.|.+     +.|||+++|+|+|+|+++
T Consensus       176 P~~lAYG~~g~~-----~~Ipp~s~Lif~veLl~i  205 (206)
T PRK11570        176 PHELAYGERGAG-----ASIPPFSTLVFEVELLEI  205 (206)
T ss_pred             CHHHcCCCCCCC-----CCcCCCCeEEEEEEEEEE
Confidence            999999998874     689999999999999986

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.70  E-value=1.4e-16  Score=157.81  Aligned_cols=134  Identities=32%  Similarity=0.415  Sum_probs=115.1

Q ss_pred             cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689          388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (557)
Q Consensus       388 ~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (557)
                      ..+..+++...|..+|.+||.+|+.|+|++||.+|.+||.++|..+.+               |.|+|+||..+|+|++.
T Consensus       104 ~a~~~e~~~k~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiF---------------YsNraAcY~~lgd~~~V  168 (606)
T KOG0547|consen  104 KAMLKEERLKYAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIF---------------YSNRAACYESLGDWEKV  168 (606)
T ss_pred             hccChHHHHHHHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchh---------------hhhHHHHHHHHhhHHHH
Confidence            456888999999999999999999999999999999999999987766               99999999999999999


Q ss_pred             HHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       468 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      +++|.++|+++|+++|||+|||.||..||++.+|+.+..-.--+ +-+|..+...+.++.+++...+.++
T Consensus       169 ied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e  238 (606)
T KOG0547|consen  169 IEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKE  238 (606)
T ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998543322 3355566666666666665554443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.69  E-value=7.7e-17  Score=153.04  Aligned_cols=123  Identities=31%  Similarity=0.434  Sum_probs=115.1

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHH
Q 008689          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (557)
Q Consensus       392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~  471 (557)
                      .++.+..+..++++||.||++|.|++|+.||.+++.+.|.++..               |.|+|.+|++++.|..|..+|
T Consensus        90 ~~~LL~~~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~---------------~~NRA~AYlk~K~FA~AE~DC  154 (536)
T KOG4648|consen   90 AQQLLKKASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVY---------------HINRALAYLKQKSFAQAEEDC  154 (536)
T ss_pred             HHHHHHhhHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccc---------------hhhHHHHHHHHHHHHHHHHhH
Confidence            45677888889999999999999999999999999999988776               889999999999999999999


Q ss_pred             HHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       472 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +.|+.+|....|||-||+.|...||...+|.++++.+|.|+|++.+.++.++.+...+
T Consensus       155 ~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~  212 (536)
T KOG4648|consen  155 EAAIALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARINSLR  212 (536)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchH
Confidence            9999999999999999999999999999999999999999999999888888876633

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.69  E-value=1.1e-16  Score=145.36  Aligned_cols=125  Identities=20%  Similarity=0.269  Sum_probs=96.5

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~  131 (557)
                      +++.+++|+|+|++++.+|++|++|+. ..|+.|++|.++++|+|+++|.+|++|++++|.|||+.|||+++        
T Consensus         2 kI~~~~vV~l~Y~l~~~dG~v~dst~~-~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d--------   72 (196)
T PRK10737          2 KVAKDLVVSLAYQVRTEDGVLVDESPV-SAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------   72 (196)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEecCC-CCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            467899999999999999999999986 48999999999999999999999999999999999999999987        


Q ss_pred             CcEEEEEEEEEeeeccccc---------cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008689          132 ATLQFDVELLSWTSVKDIC---------KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (557)
Q Consensus       132 ~~l~~~v~l~~~~~~~d~~---------~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (557)
                      ..++..|....|.....+.         .++.+..+|+        -..++.|+++||++|++.++.++-+
T Consensus        73 ~~lV~~vpr~~F~~~~~l~~G~~~~~~~~~G~~~~~V~--------ev~~d~V~vD~NHPLAG~~L~F~ve  135 (196)
T PRK10737         73 ENLVQRVPKDVFMGVDELQVGMRFLAETDQGPVPVEIT--------AVEDDHVVVDGNHMLAGQNLKFNVE  135 (196)
T ss_pred             hHHEEEecHHHCCCccCCCCCCEEEEeCCCCcEEEEEE--------EEcCCEEEEECCCcCCCCEEEEEEE
Confidence            3445555443332211111         1111222222        2345899999999999998877653

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.68  E-value=1.8e-16  Score=159.44  Aligned_cols=117  Identities=36%  Similarity=0.499  Sum_probs=111.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+...++.||.+|+.++|..|+.+|.+||...|.+...               |+|+|+||+++++|..|+.+|++++++
T Consensus       357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~l---------------YsNRAac~~kL~~~~~aL~Da~~~ieL  421 (539)
T KOG0548|consen  357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARL---------------YSNRAACYLKLGEYPEALKDAKKCIEL  421 (539)
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            47888999999999999999999999999999877654               999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +|++.|+|+|.|.|+..+.+|++|++.|.++++++|++.++...+.+|...+
T Consensus       422 ~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  422 DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999997765

>PF00254 FKBP_C: FKBP-type peptidyl-prolyl cis-trans isomerase; InterPro: IPR001179 Synonym(s): Peptidylprolyl cis-trans isomerase FKBP-type peptidylprolyl isomerases (5

Probab=99.65  E-value=1.3e-15  Score=124.53  Aligned_cols=94  Identities=39%  Similarity=0.668  Sum_probs=85.3

Q ss_pred             CCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEEcCCCccCCccccc
Q 008689          282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQ  361 (557)
Q Consensus       282 g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~  361 (557)
                      |..+|..|++|+|||.+++.+|++|+++..  ...|++|.+|.+.+++||+.+|..|++||++.|.+++.++||+.+...
T Consensus         1 ~~~~~~~gd~V~i~y~~~~~~g~~~~~~~~--~~~~~~~~~g~~~~i~g~e~al~~m~~Ge~~~~~vp~~~ayg~~~~~~   78 (94)
T PF00254_consen    1 GPRTPKEGDTVTIHYTGRLEDGKVFDSSYQ--EGEPFEFRLGSGQVIPGLEEALIGMKVGEKREFYVPPELAYGEKGLEP   78 (94)
T ss_dssp             SSSSBSTTSEEEEEEEEEETTSEEEEETTT--TTSEEEEETTSSSSSHHHHHHHTTSBTTEEEEEEEEGGGTTTTTTBCT
T ss_pred             CCccCCCCCEEEEEEEEEECCCcEEEEeee--cCcceeeeeccCccccchhhhcccccCCCEeeeEeCChhhcCccccCC
Confidence            445799999999999999999999998743  688999999999999999999999999999999999999999988743


Q ss_pred             cccCCCCCceEEEEEEEe
Q 008689          362 ELAVVPPNSTVHYEVELV  379 (557)
Q Consensus       362 ~~~~ip~~~~l~~~ieL~  379 (557)
                        ..||+++++.|+|+|+
T Consensus        79 --~~ip~~~~l~f~Iell   94 (94)
T PF00254_consen   79 --PKIPPNSTLVFEIELL   94 (94)
T ss_dssp             --TTBTTTSEEEEEEEEE
T ss_pred             --CCcCCCCeEEEEEEEC
Confidence              3599999999999985

2.1.8 from EC) in vertebrates, are receptors for the two immunosuppressants, FK506 and rapamycin. The drugs inhibit T cell proliferation by arresting two distinct cytoplasmic signal transmission pathways. Peptidylprolyl isomerases accelerate protein folding by catalysing the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides. These proteins are found in a variety of organisms.; GO: 0006457 protein folding; PDB: 1IX5_A 3JXV_A 3JYM_A 1T11_A 1PBK_A 1FD9_A 2VCD_A 3B7X_A 1Q6H_B 1Q6I_B ....

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.63  E-value=3.6e-15  Score=141.59  Aligned_cols=107  Identities=30%  Similarity=0.416  Sum_probs=96.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      +.|..+|+.||.||+.++|..|..+|.++|.....+.           .+.+.||+|+|+|++.+++|..|+.+|.+|+.
T Consensus        79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----------dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~  147 (390)
T KOG0551|consen   79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----------DLNAVLYTNRAAAQLYLGNYRSALNDCSAALK  147 (390)
T ss_pred             HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----------cHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3799999999999999999999999999999766555           35788999999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      ++|.+.||++|-|+|++.|.++.+|..+++..+.++-+
T Consensus       148 ~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  148 LKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             cCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            99999999999999999999988888888776665433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=2.3e-15  Score=146.66  Aligned_cols=129  Identities=26%  Similarity=0.383  Sum_probs=116.8

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      .+......+++||.+|+.|+|..|..+|..||.+.|.+..           ..+.||.|+|.+..++++..+|+.+|+.|
T Consensus       245 ~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~-----------~naklY~nra~v~~rLgrl~eaisdc~~A  313 (486)
T KOG0550|consen  245 MPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK-----------TNAKLYGNRALVNIRLGRLREAISDCNEA  313 (486)
T ss_pred             hHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc-----------hhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence            4566788999999999999999999999999999887543           36788999999999999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      +.+|+...|||.++|+||+.|++|++|.++|++|++++.+ .+++..++++...+++.+.+
T Consensus       314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkSkRk  373 (486)
T KOG0550|consen  314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKSKRK  373 (486)
T ss_pred             hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999887 67888888887777665543

>PRK10902 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.60  E-value=6e-15  Score=141.87  Aligned_cols=104  Identities=34%  Similarity=0.609  Sum_probs=93.1

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v  225 (557)
                      ..+.++.++++.+|+| ..|..+|.|++||.+++.+|++|+++    .|..|.+  +++++||+++|.+|++|+++.|+|
T Consensus       143 ~t~sGl~y~Vi~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--~~vipG~~EaL~~Mk~Gek~~l~I  219 (269)
T PRK10902        143 TTSTGLLYKVEKEGTG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI  219 (269)
T ss_pred             ECCCccEEEEEeCCCC-CCCCCCCEEEEEEEEEeCCCCEeeccccCCCceEEec--CCcchHHHHHHhcCCCCcEEEEEE
Confidence            3577899999999999 68999999999999999999999976    4566655  579999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008689          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (557)
Q Consensus       226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (557)
                      ||+++||..|.+      .|||+++|+|+|+|+++..
T Consensus       220 P~~laYG~~g~~------gIppns~LvfeVeLl~V~~  250 (269)
T PRK10902        220 PPELAYGKAGVP------GIPANSTLVFDVELLDVKP  250 (269)
T ss_pred             CchhhCCCCCCC------CCCCCCcEEEEEEEEEecc
Confidence            999999998763      6999999999999999864

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=99.55  E-value=4.2e-14  Score=144.29  Aligned_cols=119  Identities=20%  Similarity=0.311  Sum_probs=110.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..++.+|+.+|..++|..|+.+|.+|+++.+.+..               +|+++|.||+++++|++|+.++++++.++
T Consensus         2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~---------------a~~~~a~~~~~~g~~~eAl~~~~~Al~l~   66 (356)
T PLN03088          2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE---------------LYADRAQANIKLGNFTEAVADANKAIELD   66 (356)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            345788999999999999999999999998876543               48899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      |++..+|+++|.+|..+|+|++|+..|++|++++|++..+...+.+|..+++..
T Consensus        67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~  120 (356)
T PLN03088         67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE  120 (356)
T ss_pred             cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999998888654

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=2.7e-14  Score=143.95  Aligned_cols=113  Identities=26%  Similarity=0.339  Sum_probs=107.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+++.||..|..|+|..|+.+|..|+.+.|.+...               |.|+++||.++++|.+|+.+..+..+++
T Consensus         2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvl---------------ySnrsaa~a~~~~~~~al~da~k~~~l~   66 (539)
T KOG0548|consen    2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVL---------------YSNRSAAYASLGSYEKALKDATKTRRLN   66 (539)
T ss_pred             hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccch---------------hcchHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            5678999999999999999999999999999876544               9999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      |+++|+|.|+|.++..||+|++|+..|.+.|+.+|+|+.....+....
T Consensus        67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            999999999999999999999999999999999999999888888776

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.51  E-value=3.6e-13  Score=148.60  Aligned_cols=134  Identities=31%  Similarity=0.384  Sum_probs=116.9

Q ss_pred             CCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH
Q 008689          366 VPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA  445 (557)
Q Consensus       366 ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~  445 (557)
                      .|+...+....++..+. ....|.++.+++...+..+++.|+.+|+.|+|.+|+..|.+|+.+.|. .            
T Consensus        95 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~------------  160 (615)
T TIGR00990        95 APKNAPVEPADELPEID-ESSVANLSEEERKKYAAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P------------  160 (615)
T ss_pred             CCCCCCCCccccccccc-hhhcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h------------
Confidence            45555555555555444 355789999999999999999999999999999999999999998763 1            


Q ss_pred             HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                         ..|+|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|++|+.+|..++.+++.+.
T Consensus       161 ---~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~  228 (615)
T TIGR00990       161 ---VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRN  228 (615)
T ss_pred             ---HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence               13889999999999999999999999999999999999999999999999999999999988877654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.49  E-value=4.3e-13  Score=118.73  Aligned_cols=113  Identities=17%  Similarity=0.206  Sum_probs=103.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      +...|..+++.|+|.+|+..|.+++...|.+...               +.++|.++.++|+|++|+..|++++.++|++
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~   91 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRA---------------HIALAGTWMMLKEYTTAINFYGHALMLDASH   91 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC
Confidence            5567999999999999999999999987765543               8899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +.+++++|.++..+|++++|+..|.+|++++|++.......+.....+
T Consensus        92 ~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l  139 (144)
T PRK15359         92 PEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMV  139 (144)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988887777665554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=4e-13  Score=122.29  Aligned_cols=115  Identities=31%  Similarity=0.396  Sum_probs=102.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+.++++.||.+|..+.|..|+.+|.+||.+.|..+.+               |.|+|.||+++++|+.+..+|.+|++
T Consensus         8 ~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y---------------~tnralchlk~~~~~~v~~dcrralq   72 (284)
T KOG4642|consen    8 ESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASY---------------YTNRALCHLKLKHWEPVEEDCRRALQ   72 (284)
T ss_pred             hHHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchh---------------hhhHHHHHHHhhhhhhhhhhHHHHHh
Confidence            468899999999999999999999999999999887766               88999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC----C-CHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP----D-NRDVKLEYKTLK  526 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p----~-n~~~~~~l~~l~  526 (557)
                      ++|+.+|++|-+|++++....|++|+..+.+|+.+.-    . -.++..+|..++
T Consensus        73 l~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak  127 (284)
T KOG4642|consen   73 LDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAK  127 (284)
T ss_pred             cChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999999999999999999999999977631    1 125666666553

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.40  E-value=4.7e-13  Score=134.10  Aligned_cols=121  Identities=22%  Similarity=0.318  Sum_probs=114.8

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .|..+++++|.+|+.+.|..|+..|.+||++.++...+               +.|+|.+|+|.++|..|+.++.+|+++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~---------------~anRa~a~lK~e~~~~Al~Da~kaie~   67 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIY---------------FANRALAHLKVESFGGALHDALKAIEL   67 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceee---------------echhhhhheeechhhhHHHHHHhhhhc
Confidence            47788999999999999999999999999999988777               779999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                      +|...|+|+|+|.++++++++.+|+.+|++..++.|+++.+++.+..|....++.+
T Consensus        68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~  123 (476)
T KOG0376|consen   68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEK  123 (476)
T ss_pred             CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988876654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.38  E-value=1.1e-11  Score=108.19  Aligned_cols=103  Identities=13%  Similarity=0.171  Sum_probs=95.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      ..+.+...|..+++.|+|+.|...|+-.+.+.+.....               ++|||.|+..+++|.+|+..|.+++.+
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y---------------~~gLG~~~Q~~g~~~~AI~aY~~A~~L   98 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDY---------------WFRLGECCQAQKHWGEAIYAYGRAAQI   98 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            45667889999999999999999999999998876655               899999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      +|+++.++++.|.||+.+|+.+.|++.|+.|+.+.-.+
T Consensus        99 ~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~~~  136 (157)
T PRK15363         99 KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICGEV  136 (157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhccC
Confidence            99999999999999999999999999999999987433

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=99.38  E-value=6.8e-13  Score=127.80  Aligned_cols=155  Identities=31%  Similarity=0.450  Sum_probs=137.9

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH----HHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE----KKQAKALKVACNLNNAACKLKLKDYKQ  466 (557)
Q Consensus       391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (557)
                      +....+..+...++.|+..|+.++|..|...|.+++++..........+    +.....++..++.|+|.|-++.+.|..
T Consensus       214 ~~~~~~~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~  293 (372)
T KOG0546|consen  214 DFDKALEREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGG  293 (372)
T ss_pred             ccchhhhhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCc
Confidence            4445667788899999999999999999999999999887422211111    344667788889999999999999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      |+..|..+++.++...+||||++++++.+.++++|+++++.|....|++..+...+...+++...++.++++.+.+||+
T Consensus       294 a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~~~~~~~~~~k~~s  372 (372)
T KOG0546|consen  294 ARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQYNRKQKKALSKMFS  372 (372)
T ss_pred             ceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999984

>PRK15095 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.36  E-value=2.2e-12  Score=114.55  Aligned_cols=68  Identities=24%  Similarity=0.452  Sum_probs=63.3

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCC
Q 008689          168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKG  235 (557)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g  235 (557)
                      .++.++.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.+.|||+.|||...
T Consensus         4 ~i~~~~~V~v~Y~~~~~dG~v~dst~~~~~P~~f~~G~g~vi~gle~aL~gm~~Ge~~~v~ipp~~ayG~~d   75 (156)
T PRK15095          4 SVQSNSAVLVHFTLKLDDGSTAESTRNNGKPALFRLGDGSLSEGLEQQLLGLKVGDKKTFSLEPEAAFGVPS   75 (156)
T ss_pred             ccCCCCEEEEEEEEEeCCCCEEEECCCCCCCEEEEeCCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            4577899999999999999999986    6999999999999999999999999999999999999999653

>COG1047 SlpA FKBP-type peptidyl-prolyl cis-trans isomerases 2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.36  E-value=2.7e-12  Score=112.92  Aligned_cols=123  Identities=25%  Similarity=0.361  Sum_probs=92.1

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~  244 (557)
                      +..++.|+++|+.++.+|++++++    .|+.|.+|.|++++||+++|.+|.+|++.+|.|||+.|||...         
T Consensus         3 i~k~~~V~i~Y~~~~~dg~v~Dtt~e~~~P~~~i~G~g~li~glE~al~g~~~Ge~~~V~IpPE~AfGe~~---------   73 (174)
T COG1047           3 IEKGDVVSLHYTLKVEDGEVVDTTDENYGPLTFIVGAGQLIPGLEEALLGKEVGEEFTVEIPPEDAFGEYD---------   73 (174)
T ss_pred             ccCCCEEEEEEEEEecCCcEEEcccccCCCeEEEecCCCcchhHHHHHhCCCCCceeEEEeCchHhcCCCC---------
Confidence            567899999999999999999987    5999999999999999999999999999999999999999763         


Q ss_pred             CCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCC-----CCCCCCCCCEEEEEEEEEecCCcEEEe
Q 008689          245 VPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD-----GFERPNEGAVVKVKLIGKLQDGTVFVK  308 (557)
Q Consensus       245 ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~-----g~~~p~~~~~v~v~~~~~l~~g~~~~~  308 (557)
                          ..|+-.+.+..|....    +..+-..+.-++.     |...-..+.+|+|.|++.|++.++.++
T Consensus        74 ----~~lvq~vp~~~F~~~~----~~~vGm~~~~~~~~~~~~~~V~~V~~~~V~VDfNHpLAGktL~fe  134 (174)
T COG1047          74 ----PDLVQRVPRDEFQGVG----ELEVGMEVEAEGGDGEIPGVVTEVSGDRVTVDFNHPLAGKTLHFE  134 (174)
T ss_pred             ----hHHeEEecHHHhCcCC----CCCCCcEEEEcCCCceeeEEEEEEcCCEEEEeCCCcCCCCeEEEE
Confidence                3445455555553311    2222223333221     222334578899999999987766543

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.35  E-value=1.5e-11  Score=107.71  Aligned_cols=116  Identities=20%  Similarity=0.289  Sum_probs=103.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +......|..+++.++|++|+..|.+++...+.+..               ++.++|.|++++++|.+|+..+++++..+
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR---------------YWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            455788999999999999999999999988765432               37899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      |.+...++.+|.+|..+|++++|+..|+++++++|++........++...+
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  132 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYSELKERAEAML  132 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999987776666665544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.27  E-value=1.2e-11  Score=126.32  Aligned_cols=134  Identities=16%  Similarity=0.094  Sum_probs=106.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ++.+.++.+.||.|-..+.|++|+.+|.+|+.+-|..+..               |.|+|.+|..+|..+.||.+|+++|
T Consensus       249 P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a---------------~gNla~iYyeqG~ldlAI~~Ykral  313 (966)
T KOG4626|consen  249 PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVA---------------HGNLACIYYEQGLLDLAIDTYKRAL  313 (966)
T ss_pred             CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhh---------------ccceEEEEeccccHHHHHHHHHHHH
Confidence            3456788899999999999999999999999887766554               7788888888888888888888888


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +++|+...||.++|.|+..+|+..+|.++|++||.+.|+.++....|..++..+...+..-+ +|.+.|.
T Consensus       314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~-ly~~al~  382 (966)
T KOG4626|consen  314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR-LYLKALE  382 (966)
T ss_pred             hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH-HHHHHHh
Confidence            88888888888888888888888888888888888888888888888877777766666554 6665554

>PRK10737 FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional

Probab=99.25  E-value=2.1e-11  Score=111.00  Aligned_cols=67  Identities=22%  Similarity=0.352  Sum_probs=63.0

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCC
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKG  235 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g  235 (557)
                      +..++.|+++|+.++.+|++++++   .|+.|.+|.++++|+|+++|.+|++|++++|.|||+.|||...
T Consensus         3 I~~~~vV~l~Y~l~~~dG~v~dst~~~~Pl~~~~G~g~lipglE~aL~G~~~Gd~~~v~l~peeAyGe~d   72 (196)
T PRK10737          3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD   72 (196)
T ss_pred             cCCCCEEEEEEEEEeCCCCEEEecCCCCCeEEEeCCCcchHHHHHHHcCCCCCCEEEEEEChHHhcCCCC
Confidence            457789999999999999999987   8999999999999999999999999999999999999999753

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.20  E-value=4.3e-11  Score=91.58  Aligned_cols=65  Identities=31%  Similarity=0.474  Sum_probs=62.8

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCC
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDP  513 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~p  513 (557)
                      ..+.++|.+++.+++|++|+.+|+++++++|+++.+++++|.+|..+| ++++|+++|++|++++|
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            358899999999999999999999999999999999999999999999 79999999999999998

...

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.19  E-value=2.9e-10  Score=113.50  Aligned_cols=105  Identities=20%  Similarity=0.142  Sum_probs=98.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+.++|..+...|++.+|+..|++|+.+.|....               +|+++|.++..+++|++|+..++++++
T Consensus        62 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~Al~  126 (296)
T PRK11189         62 ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD---------------AYNYLGIYLTQAGNFDAAYEAFDSVLE  126 (296)
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34667899999999999999999999999998876543               489999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ++|++..+++++|.++..+|++++|+++|+++++++|++.
T Consensus       127 l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~  166 (296)
T PRK11189        127 LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP  166 (296)
T ss_pred             hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            9999999999999999999999999999999999999996

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.18  E-value=9.5e-11  Score=119.76  Aligned_cols=81  Identities=17%  Similarity=0.194  Sum_probs=60.8

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ...++|||.+|-.+|++++|+.+|++||+++|+.+.||.++|..|..+|+.+.|+++|.+|+.++|...++...|..+.+
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            44577788888888888888888888888888777777777777777777777777777777777777777777666654


Q ss_pred             H
Q 008689          528 K  528 (557)
Q Consensus       528 ~  528 (557)
                      .
T Consensus       468 D  468 (966)
T KOG4626|consen  468 D  468 (966)
T ss_pred             c
Confidence            3

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.15  E-value=5.4e-10  Score=104.34  Aligned_cols=110  Identities=18%  Similarity=0.134  Sum_probs=97.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH-HhhhC--HHHHHHHHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK-LKLKD--YKQAEKLCTKV  474 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~-~k~~~--~~~A~~~~~~a  474 (557)
                      .+..+...|..+...|+|+.|+..|.+|+++.+.+...               +.++|.++ ...++  +.+|+..++++
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~---------------~~~lA~aL~~~~g~~~~~~A~~~l~~a  136 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAEL---------------YAALATVLYYQAGQHMTPQTREMIDKA  136 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence            35678889999999999999999999999998876544               88999984 77787  59999999999


Q ss_pred             HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      ++.+|++..+++.+|.++..+|+|++|+..++++++++|.+.+-...+
T Consensus       137 l~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        137 LALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            999999999999999999999999999999999999999875444333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.13  E-value=6.4e-10  Score=122.83  Aligned_cols=148  Identities=14%  Similarity=0.090  Sum_probs=92.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-------HHHHHHHHHHHHhhHHHH
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-------KKQAKALKVACNLNNAAC  457 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~-------~~~~~~~~~~~~~nla~~  457 (557)
                      ..+..+...|..++..|++++|+..|++|+.+.|.....            ..++       ..+.......+++++|.+
T Consensus       329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~  408 (615)
T TIGR00990       329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQL  408 (615)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            345567778888888889999999998888876543211            0000       000111123456667777


Q ss_pred             HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (557)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~  537 (557)
                      |+.+|+|++|+.+|++++.++|++..+++++|.++..+|++++|+..|++++++.|++..+...+..+...+.+..+...
T Consensus       409 ~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~  488 (615)
T TIGR00990       409 HFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIE  488 (615)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777776666666666655555444332


Q ss_pred             HHHHHHhh
Q 008689          538 KFYGNMFA  545 (557)
Q Consensus       538 ~~~~~mf~  545 (557)
                       .|.+.+.
T Consensus       489 -~~~~Al~  495 (615)
T TIGR00990       489 -KFDTAIE  495 (615)
T ss_pred             -HHHHHHh
Confidence             4444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.11  E-value=1.5e-09  Score=92.34  Aligned_cols=112  Identities=18%  Similarity=0.196  Sum_probs=96.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+++.|+|++|+..|.+++...+.+..            ...+++++|.++++.++|+.|+.++++++..+|
T Consensus         3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p   70 (119)
T TIGR02795         3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY------------APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP   70 (119)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc------------cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence            45678899999999999999999999987664321            123477899999999999999999999999988


Q ss_pred             CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (557)
Q Consensus       480 ~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~  523 (557)
                      ++   ..+++.+|.++.+++++++|+..|++++...|++..+...+.
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~  117 (119)
T TIGR02795        71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAAKLAQK  117 (119)
T ss_pred             CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence            86   678999999999999999999999999999999976555443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=4.2e-10  Score=116.71  Aligned_cols=135  Identities=19%  Similarity=0.138  Sum_probs=82.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHH-HHH---------HHHHHhhHHHHHHh
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQA-KAL---------KVACNLNNAACKLK  460 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~-~~~---------~~~~~~nla~~~~k  460 (557)
                      +.+...||.|--+++++.|+++|++|+.+.+...-.         ..+|.+.. ...         .-.+++-+|.+|+|
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            567889999999999999999999999998854322         11111111 111         12234455556666


Q ss_pred             hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      +++|+.|..++++|++++|.|.-.+...|..+.++|+.++|+..|++|+.++|.|...+-....+...+.+..+
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~e  575 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVE  575 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHH
Confidence            66666666666666666666666666666666666666666666666666666665544444444444444433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.06  E-value=2.2e-09  Score=107.42  Aligned_cols=137  Identities=20%  Similarity=0.192  Sum_probs=111.2

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...|..+.-+|..+|-.|++..|...|+++|.+.+.....               |..||..|+.+++-++-..++++|.
T Consensus       323 e~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l---------------yI~~a~~y~d~~~~~~~~~~F~~A~  387 (606)
T KOG0547|consen  323 EYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL---------------YIKRAAAYADENQSEKMWKDFNKAE  387 (606)
T ss_pred             HHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH---------------HHHHHHHHhhhhccHHHHHHHHHHH
Confidence            4568889999999999999999999999999988755432               7889999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      .+||+|+..||.||+.+.-+++|++|+++|++|++|+|+|.-...++.-+.-++.+..+.+ +.|.....++.
T Consensus       388 ~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m-~~Fee~kkkFP  459 (606)
T KOG0547|consen  388 DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESM-KTFEEAKKKFP  459 (606)
T ss_pred             hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhCC
Confidence            9999999999999999999999999999999999999999544444444444444444433 35555555443

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.05  E-value=1.2e-09  Score=104.73  Aligned_cols=114  Identities=24%  Similarity=0.274  Sum_probs=101.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+.+.|+.++.+++|..|+.+|..|++..|++..               .++.+|.+|+.+|+-+-|+.++.++|+
T Consensus        36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~---------------aifrRaT~yLAmGksk~al~Dl~rVle  100 (504)
T KOG0624|consen   36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ---------------AIFRRATVYLAMGKSKAALQDLSRVLE  100 (504)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH---------------HHHHHHHHHhhhcCCccchhhHHHHHh
Confidence            35778899999999999999999999999998875432               277999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      +.|+..-|-..||.+++++|++++|.++|+++|..+|++........++
T Consensus       101 lKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl  149 (504)
T KOG0624|consen  101 LKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKL  149 (504)
T ss_pred             cCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHH
Confidence            9999999999999999999999999999999999999876544444444

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.04  E-value=1.6e-09  Score=103.80  Aligned_cols=129  Identities=23%  Similarity=0.278  Sum_probs=108.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (557)
                      -.++..+....+.+......++|-.++..+.+.++..|....+           +...+--++.||..-+++-+||..|+
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~i-----------r~~~~r~~c~C~~~d~~~~eAiqqC~  331 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMI-----------RYNGFRVLCTCYREDEQFGEAIQQCK  331 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccce-----------eeeeeheeeecccccCCHHHHHHHHH
Confidence            3455666666777788888999999999999988876654433           22234457899999999999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       473 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      ++|.++|+++.+|..||.||+.-..|+.|+.+|++|++++++|..++.-+.+.++..+..
T Consensus       332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reGle~Akrlkkqs  391 (504)
T KOG0624|consen  332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREGLERAKRLKKQS  391 (504)
T ss_pred             HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999888876665543

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.02  E-value=4.1e-09  Score=96.47  Aligned_cols=110  Identities=24%  Similarity=0.248  Sum_probs=96.2

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (557)
                      .+...+..+...|..++..|+|++|+.+|++|+...+....            ...++.++|.+|.++++|++|+..+.+
T Consensus        30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~   97 (172)
T PRK02603         30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND------------RSYILYNMGIIYASNGEHDKALEYYHQ   97 (172)
T ss_pred             cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch------------HHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            35566788999999999999999999999999987553221            234588999999999999999999999


Q ss_pred             HHccCCCChHHHHHHHHHHHhcCC--------------HHHHHHHHHHHHHhCCCC
Q 008689          474 VLDLDSRNVKALYRRAQAYIQMAD--------------LDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       474 al~~~p~~~ka~~~~g~a~~~lg~--------------~~~A~~~~~~al~l~p~n  515 (557)
                      ++..+|.+..+++.+|.+|..+++              +++|++.+++++.++|+|
T Consensus        98 al~~~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603         98 ALELNPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHhCcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            999999999999999999999998              678888888888888887

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=99.00  E-value=1.4e-09  Score=82.03  Aligned_cols=65  Identities=29%  Similarity=0.309  Sum_probs=60.8

Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      +++|..+++.|+|++|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+|+
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            36899999999999999999999999999999999999999999999999999999999999984

>PRK15331 chaperone protein SicA; Provisional

Probab=99.00  E-value=4.9e-09  Score=91.94  Aligned_cols=107  Identities=13%  Similarity=0.185  Sum_probs=94.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      .......|-.+|+.|+|+.|...|+-...+.+.+..+               +..||.|+..+++|++|+..|..+..++
T Consensus        37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y---------------~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~  101 (165)
T PRK15331         37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDY---------------TMGLAAVCQLKKQFQKACDLYAVAFTLL  101 (165)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4667788999999999999999999888776655443               6799999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~  521 (557)
                      ++++...|+.|+||+.+|+.+.|+.+|..|+. .|.+..++..
T Consensus       102 ~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~-~~~~~~l~~~  143 (165)
T PRK15331        102 KNDYRPVFFTGQCQLLMRKAAKARQCFELVNE-RTEDESLRAK  143 (165)
T ss_pred             cCCCCccchHHHHHHHhCCHHHHHHHHHHHHh-CcchHHHHHH
Confidence            99999999999999999999999999999998 5666554443

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.99  E-value=6e-09  Score=118.52  Aligned_cols=122  Identities=5%  Similarity=-0.013  Sum_probs=93.2

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+.+.|++++|+..|.+|+.+.|.+..               +++|+|.++..++++++|+..++++++++|
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~---------------a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P  674 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN---------------YQAALGYALWDSGDIAQSREMLERAHKGLP  674 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            34556666777777777777777777776665442               377888888888888888888888888888


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      +++.+++++|.++..+|++++|+..|++|++++|++..+......+..+....+...
T Consensus       675 ~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~  731 (987)
T PRK09782        675 DDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLH  731 (987)
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHH
Confidence            888888888888888888888888888888888888877777776665555444433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.98  E-value=5.5e-09  Score=92.42  Aligned_cols=107  Identities=10%  Similarity=0.015  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHH
Q 008689          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD  499 (557)
Q Consensus       420 ~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~  499 (557)
                      ..|.+|+++.|..                  +.++|.++..+|+|++|+.+|.+++.++|.+..+++.+|.++..+|+++
T Consensus        14 ~~~~~al~~~p~~------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~   75 (144)
T PRK15359         14 DILKQLLSVDPET------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYT   75 (144)
T ss_pred             HHHHHHHHcCHHH------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            5677888776632                  4578999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       500 ~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +|+..|.+|++++|++..+...+..+...+.+..+... .|.+...
T Consensus        76 ~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~-~~~~Al~  120 (144)
T PRK15359         76 TAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLARE-AFQTAIK  120 (144)
T ss_pred             HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            99999999999999999999999998888877766553 5555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.98  E-value=2.6e-08  Score=82.63  Aligned_cols=118  Identities=19%  Similarity=0.168  Sum_probs=101.6

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHH
Q 008689          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (557)
Q Consensus       391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~  470 (557)
                      .....++....+--+|..+-..|+.+.|++.|.+|+.++|..++.               |+|+|.++.-+++.++|+.+
T Consensus        35 ~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSa---------------yNNRAQa~RLq~~~e~ALdD   99 (175)
T KOG4555|consen   35 PDTQAIKASRELELKAIALAEAGDLDGALELFGQALCLAPERASA---------------YNNRAQALRLQGDDEEALDD   99 (175)
T ss_pred             CchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHh---------------hccHHHHHHHcCChHHHHHH
Confidence            334566777888889999999999999999999999999876654               99999999999999999999


Q ss_pred             HHHHHccCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          471 CTKVLDLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       471 ~~~al~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      .++++++....    ..+|..||..|..+|+.+.|+.+|+.|-.+....  ++.+|-.+
T Consensus       100 Ln~AleLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LGS~F--Ar~QLV~l  156 (175)
T KOG4555|consen  100 LNKALELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQLGSKF--AREQLVEL  156 (175)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhCCHH--HHHHHHhc
Confidence            99999986544    5689999999999999999999999999997665  55555444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.97  E-value=1.7e-09  Score=86.16  Aligned_cols=83  Identities=29%  Similarity=0.380  Sum_probs=71.9

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      +++|+.|+..|++++...+.+.             ....++++|.||+++++|++|+..+++ +..++.+..+.+.+|+|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~-------------~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~   67 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNP-------------NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC   67 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTH-------------HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCCh-------------hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence            6899999999999999887421             122467899999999999999999999 88999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHH
Q 008689          492 YIQMADLDLAEFDIKKA  508 (557)
Q Consensus       492 ~~~lg~~~~A~~~~~~a  508 (557)
                      +..+|+|++|++.|++|
T Consensus        68 ~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   68 LLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHTT-HHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHhcC
Confidence            99999999999999886

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.96  E-value=6.7e-09  Score=113.77  Aligned_cols=137  Identities=5%  Similarity=-0.008  Sum_probs=122.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..++..|....+.|.|++|...+..++.+.|....               +..|+|.+..+++++++|+..|+++|..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~---------------a~~~~a~~L~~~~~~eeA~~~~~~~l~~  149 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE---------------AFILMLRGVKRQQGIEAGRAEIELYFSG  149 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH---------------HHHHHHHHHHHhccHHHHHHHHHHHhhc
Confidence            4677888999999999999999999999999886543               3789999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG  550 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~  550 (557)
                      +|+|..+++.+|.++.++|+|++|++.|++++..+|++..+...+..+.+.+.+.++... .|.+.+......
T Consensus       150 ~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~-~~~~a~~~~~~~  221 (694)
T PRK15179        150 GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARD-VLQAGLDAIGDG  221 (694)
T ss_pred             CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHhhCcc
Confidence            999999999999999999999999999999999999999999999998888877777664 677776665443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.96  E-value=5.7e-10  Score=107.28  Aligned_cols=111  Identities=23%  Similarity=0.259  Sum_probs=103.5

Q ss_pred             CCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689          389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (557)
Q Consensus       389 ~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~  468 (557)
                      ....++.++.|...+-.+..++..|.++.|+.+|..|+.+.+....+               |.++|.++++++++..|+
T Consensus       104 ~e~Tee~~eqa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l---------------~~kr~sv~lkl~kp~~ai  168 (377)
T KOG1308|consen  104 AEITEEMMDQANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAIL---------------YAKRASVFLKLKKPNAAI  168 (377)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhcCcchhhhhcccccccccCCchhhh---------------cccccceeeeccCCchhh
Confidence            34567889999999999999999999999999999999998876654               889999999999999999


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      ++|..|++++|+..+.|-.|+.|+..||+|++|..+|..|.+++-+
T Consensus       169 rD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kld~d  214 (377)
T KOG1308|consen  169 RDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKLDYD  214 (377)
T ss_pred             hhhhhhhccCcccccccchhhHHHHHhhchHHHHHHHHHHHhcccc
Confidence            9999999999999999999999999999999999999999998754

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.95  E-value=5e-09  Score=83.99  Aligned_cols=99  Identities=34%  Similarity=0.445  Sum_probs=87.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .+...|..++..+++.+|+..|.++++..+...               .++.++|.++...+++++|+.++++++...|.
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~   66 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA---------------DAYYNLAAAYYKLGKYEEALEDYEKALELDPD   66 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            356788999999999999999999998765432               34778999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      +..+++.+|.++..++++++|...+.++++++|.
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          67 NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN  100 (100)
T ss_pred             chhHHHHHHHHHHHHHhHHHHHHHHHHHHccCCC
Confidence            9999999999999999999999999999988874

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.95  E-value=1.1e-08  Score=95.60  Aligned_cols=122  Identities=12%  Similarity=0.063  Sum_probs=104.9

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      .++.++++..|.++++..|.+..               .+.++|.+|+.++++++|+..++++++++|++..+++.+|.+
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~---------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~a  116 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSE---------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATV  116 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56667888888888887776543               388999999999999999999999999999999999999998


Q ss_pred             H-HhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689          492 Y-IQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT  549 (557)
Q Consensus       492 ~-~~lg~--~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~  549 (557)
                      + ...|+  +++|++.|+++++++|++..+...+......+.+.++... .|++++.....
T Consensus       117 L~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~-~~~~aL~l~~~  176 (198)
T PRK10370        117 LYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIE-LWQKVLDLNSP  176 (198)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHH-HHHHHHhhCCC
Confidence            5 67787  5999999999999999999999999999888887777764 77777765544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=9.2e-09  Score=102.47  Aligned_cols=124  Identities=19%  Similarity=0.192  Sum_probs=82.7

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      .||-|--+++.+.|+..|++|+++.|.....               +.-+|.-|..+++-..|+..|++|++++|.+.+|
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~a---------------WTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA  400 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSA---------------WTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA  400 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHH---------------HHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH
Confidence            5777777888999999999999988765433               5556666666666666666666666666666666


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      ||-+|++|.-++-..-|+-+|++|+++-|++..++..|+.|..++.+..++.+ .|++.+
T Consensus       401 WYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiK-Cykrai  459 (559)
T KOG1155|consen  401 WYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIK-CYKRAI  459 (559)
T ss_pred             HhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHH-HHHHHH
Confidence            66666666666666666666666666666666666666666655555554443 444443

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.8e-08  Score=102.75  Aligned_cols=124  Identities=23%  Similarity=0.172  Sum_probs=94.9

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC---------hHHHHHHHHH-----------------HHHHHhhHHHHH
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---------DEEKKQAKAL-----------------KVACNLNNAACK  458 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~---------~~~~~~~~~~-----------------~~~~~~nla~~~  458 (557)
                      .|..+.+.+++..|-..|.+|+.+.|.++-..         .++..++..+                 -...++|||.+|
T Consensus       386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            45555556666666666666666665554221         1122221111                 123378999999


Q ss_pred             HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      .|++.|.+|+.+++++|.+.|.++.++--.|.+|..+|+++.|++.|.+||.++|+|..+...|..+...
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999998888888766444

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.93  E-value=1.9e-08  Score=100.22  Aligned_cols=134  Identities=16%  Similarity=0.128  Sum_probs=120.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      ....+--.|.++...++-..|+..|++|++++|.+-..               ++-||++|--++-+.=|+-++++|+.+
T Consensus       363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRA---------------WYGLGQaYeim~Mh~YaLyYfqkA~~~  427 (559)
T KOG1155|consen  363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRA---------------WYGLGQAYEIMKMHFYALYYFQKALEL  427 (559)
T ss_pred             hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHH---------------HhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence            35566778999999999999999999999999976644               789999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      .|++...|--+|.||.++++.++|+++|++|+...-.+..+.-.|+++.++++..++.- +.|.+.....
T Consensus       428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa-~~yek~v~~~  496 (559)
T KOG1155|consen  428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAA-QYYEKYVEVS  496 (559)
T ss_pred             CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHH
Confidence            99999999999999999999999999999999999888899999999999998887765 3666665543

>TIGR00115 tig trigger factor

Probab=98.91  E-value=1.5e-09  Score=113.50  Aligned_cols=137  Identities=20%  Similarity=0.320  Sum_probs=102.5

Q ss_pred             CCCCCcCCCCCCCCcCccCcceee-------ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCc
Q 008689           10 ANEMDADMDLPDDAPMMKVGEEKE-------IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTP   82 (557)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p   82 (557)
                      ...++++..++...|...+.++..       ....+.+    .+-+. ..++.||.|.++|+++. +|+.|+++..  .+
T Consensus       102 ev~l~~y~~i~v~~~~~~vtde~vd~~i~~l~~~~a~~----~~~~~-~~~~~gD~V~v~~~~~~-dg~~~~~~~~--~~  173 (408)
T TIGR00115       102 EVELGDYKGIEVEKPEVEVTDEDVDEELEKLREQNATL----VPVER-RAAEKGDRVTIDFEGFI-DGEAFEGGKA--EN  173 (408)
T ss_pred             ceecCCCCceEEEeccCCCCHHHHHHHHHHHHHhCCcc----ccccc-cccCCCCEEEEEEEEEE-CCEECcCCCC--CC
Confidence            344555555555555555554442       1222222    22233 46789999999999986 8999988753  78


Q ss_pred             eEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeee
Q 008689           83 FKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI  159 (557)
Q Consensus        83 ~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i  159 (557)
                      +.|.+|.+.+++||+++|.||++|++++|.++++.+|+..+.     ++.++.|.|+|.++........+..+++.+
T Consensus       174 ~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~-----~gk~~~f~v~i~~I~~~~~peldDefak~~  245 (408)
T TIGR00115       174 FSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL-----AGKEATFKVTVKEVKEKELPELDDEFAKEL  245 (408)
T ss_pred             eEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC-----CCCeEEEEEEEEEeccCCCCCCCHHHHHhc
Confidence            999999999999999999999999999999999999987664     469999999999998766666666666654

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.90  E-value=5.2e-08  Score=93.95  Aligned_cols=113  Identities=17%  Similarity=0.172  Sum_probs=98.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..+++.|+|+.|+..|.+++...|.+..            ....++++|.+|+++++|++|+..++++++.
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~   99 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY------------AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL   99 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            4567889999999999999999999999998775431            2234789999999999999999999999999


Q ss_pred             CCCChH---HHHHHHHHHHhc--------CCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          478 DSRNVK---ALYRRAQAYIQM--------ADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       478 ~p~~~k---a~~~~g~a~~~l--------g~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      +|++..   +++.+|.++..+        +++++|++.|++++..+|++......+
T Consensus       100 ~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~  155 (235)
T TIGR03302       100 HPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAK  155 (235)
T ss_pred             CcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHH
Confidence            998876   799999999987        889999999999999999997555444

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=98.89  E-value=1.6e-09  Score=111.94  Aligned_cols=146  Identities=21%  Similarity=0.355  Sum_probs=115.6

Q ss_pred             CCCCCCCCCcCCCCCCCCcCccCcceee---ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCc
Q 008689            6 DIPAANEMDADMDLPDDAPMMKVGEEKE---IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTP   82 (557)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p   82 (557)
                      ++=+...++++..++..-|...+.++..   |..-.-....+.+-++ . ++.||.|+|+|.++. ||..|+....  +.
T Consensus       110 ev~Pev~l~d~~~i~v~~~~~ev~d~dvd~~L~~l~~~~a~~~~~e~-~-a~~gD~v~IDf~g~i-Dg~~fegg~a--e~  184 (441)
T COG0544         110 EVYPEVELGDYKGIEVEKPVVEVTDEDVDEELEKLRKRFATLEPVEG-A-AENGDRVTIDFEGSV-DGEEFEGGKA--EN  184 (441)
T ss_pred             EEeeceecCccccceeecCCcccCHHHHHHHHHHHHHhcCccccccc-c-cccCCEEEEEEEEEE-cCeeccCccc--cC
Confidence            3444577889999999999988885552   2222333444545455 3 899999999999976 9999988765  57


Q ss_pred             eEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeee
Q 008689           83 FKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILK  161 (557)
Q Consensus        83 ~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~  161 (557)
                      +.|.||+|++||||+.+|+||++|+++.|.+..+..|....+     ++.+..|.|+|..+........++.+.+.+..
T Consensus       185 ~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~dy~a~~L-----aGK~a~F~V~vkeVk~~elpEldDEfAk~~~~  258 (441)
T COG0544         185 FSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPEDYHAEEL-----AGKEATFKVKVKEVKKRELPELDDEFAKKLGE  258 (441)
T ss_pred             eEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccccchhHh-----CCCceEEEEEEEEEeecCCCCCCHHHHHhcCc
Confidence            999999999999999999999999999998888888877665     44899999999999987777777777665543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.89  E-value=4.8e-08  Score=89.01  Aligned_cols=110  Identities=18%  Similarity=0.084  Sum_probs=92.0

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      ....+..+...|..++..++|++|+..|.+|+.+.+...            ....+++|+|.+|.+++++++|+..|.++
T Consensus        31 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~------------~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         31 GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY------------DRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            344688889999999999999999999999998854321            12335899999999999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHHhCCCCH
Q 008689          475 LDLDSRNVKALYRRAQAYI-------QMADLD-------LAEFDIKKALEIDPDNR  516 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~-------~lg~~~-------~A~~~~~~al~l~p~n~  516 (557)
                      +.++|.+..+++++|.+|.       .+|+++       +|+..|++++.++|++.
T Consensus        99 l~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033         99 LERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            9999999999999999999       777776       55666667778888774

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.88  E-value=3.6e-08  Score=90.26  Aligned_cols=132  Identities=23%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC----------------ChHHHHHH---HHHHHHHHhhH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF----------------GDEEKKQA---KALKVACNLNN  454 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~----------------~~~~~~~~---~~~~~~~~~nl  454 (557)
                      ..-..+....+.|..|++.|++..|...+++||+..|+....                ..+...+.   ..-...+++|.
T Consensus        30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNY  109 (250)
T COG3063          30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNY  109 (250)
T ss_pred             cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhh
Confidence            344567788899999999999999999999999988865432                00000100   01122334444


Q ss_pred             HHHHHhhhCHHHHHHHHHHHHcc--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          455 AACKLKLKDYKQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~--~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      +.-...+|+|++|..++++|+..  -+.....|-|+|.|.++.|+++.|.++|+++|+++|++.....++.+.
T Consensus       110 G~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~  182 (250)
T COG3063         110 GAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL  182 (250)
T ss_pred             hHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence            44444444444444444444432  122345566677777777777777777777777777776555444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.88  E-value=2.7e-09  Score=81.52  Aligned_cols=66  Identities=29%  Similarity=0.384  Sum_probs=60.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHcc
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~  477 (557)
                      |..+...|..+++.++|++|+..|++|+++.+.+.               .+++|+|.||.+++ +|.+|+.++++++++
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~---------------~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA---------------EAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH---------------HHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            67789999999999999999999999999987644               34999999999999 799999999999999


Q ss_pred             CC
Q 008689          478 DS  479 (557)
Q Consensus       478 ~p  479 (557)
                      +|
T Consensus        68 ~P   69 (69)
T PF13414_consen   68 DP   69 (69)
T ss_dssp             ST
T ss_pred             Cc
Confidence            88

...

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.88  E-value=2.3e-08  Score=113.76  Aligned_cols=99  Identities=10%  Similarity=0.107  Sum_probs=89.0

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      .++.|+|.++.++|++++|+..+.+++.++|++..+++++|.++..+|++++|++.|++|++++|++..+...+..+...
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHhhhcc
Q 008689          529 MKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       529 ~~~~~~~~~~~~~~mf~~~~  548 (557)
                      +.+..+... .|++.+..-.
T Consensus       690 lGd~~eA~~-~l~~Al~l~P  708 (987)
T PRK09782        690 LDDMAATQH-YARLVIDDID  708 (987)
T ss_pred             CCCHHHHHH-HHHHHHhcCC
Confidence            877776664 6666655443

>PRK12370 invasion protein regulator; Provisional

Probab=98.87  E-value=2.4e-08  Score=108.63  Aligned_cols=108  Identities=12%  Similarity=-0.054  Sum_probs=51.9

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (557)
                      ..|..+...|++++|+..|++|+++.|.+...               ++++|.++..+|++++|+.+++++++++|.+..
T Consensus       343 ~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a---------------~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~  407 (553)
T PRK12370        343 LLGLINTIHSEYIVGSLLFKQANLLSPISADI---------------KYYYGWNLFMAGQLEEALQTINECLKLDPTRAA  407 (553)
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChh
Confidence            34444445555555555555555544433221               444555555555555555555555555555544


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEID-PDNRDVKLEYKTLK  526 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~-p~n~~~~~~l~~l~  526 (557)
                      +++.++.+++.+|++++|++.++++++.. |++......+..+.
T Consensus       408 ~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l  451 (553)
T PRK12370        408 AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFL  451 (553)
T ss_pred             hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHH
Confidence            44444444444555555555555554442 44444444444333

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.87  E-value=2.6e-08  Score=93.09  Aligned_cols=121  Identities=16%  Similarity=0.139  Sum_probs=110.6

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .+...|..++..|+|.+|+..+.+|....|+++..               ++-+|.+|.++|+++.|...|.+++++.|+
T Consensus       102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~---------------~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~  166 (257)
T COG5010         102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEA---------------WNLLGAALDQLGRFDEARRAYRQALELAPN  166 (257)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhh---------------hhHHHHHHHHccChhHHHHHHHHHHHhccC
Confidence            44559999999999999999999999999988766               888999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      ++.++-|+|..|+-.|+++.|...+..+...-+.+..+...+..+.......+..+
T Consensus       167 ~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~  222 (257)
T COG5010         167 EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAE  222 (257)
T ss_pred             CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHH
Confidence            99999999999999999999999999999999989999999988877766555544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.87  E-value=1.6e-08  Score=96.19  Aligned_cols=91  Identities=25%  Similarity=0.321  Sum_probs=81.8

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      +-+.-+++.++|.+|+..|++||+++|+|+-.|.+||.||.+||+|+.|++++++|+++||....++..|..++-.+.+.
T Consensus        86 ~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   86 NEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            66778889999999999999999999999999999999999999999999999999999999988888888888888777


Q ss_pred             HHHHHHHHHHHh
Q 008689          533 NKKEAKFYGNMF  544 (557)
Q Consensus       533 ~~~~~~~~~~mf  544 (557)
                      .+.... |++.+
T Consensus       166 ~~A~~a-ykKaL  176 (304)
T KOG0553|consen  166 EEAIEA-YKKAL  176 (304)
T ss_pred             HHHHHH-HHhhh
Confidence            776653 65544

>PRK12370 invasion protein regulator; Provisional

Probab=98.86  E-value=2.4e-08  Score=108.64  Aligned_cols=95  Identities=14%  Similarity=0.070  Sum_probs=86.0

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      .+++.+|+..+++|+++.|.+...               +.++|.++..++++++|+..++++++++|+++.+++.+|.+
T Consensus       317 ~~~~~~A~~~~~~Al~ldP~~~~a---------------~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~  381 (553)
T PRK12370        317 QNAMIKAKEHAIKATELDHNNPQA---------------LGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWN  381 (553)
T ss_pred             chHHHHHHHHHHHHHhcCCCCHHH---------------HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            456899999999999998865533               77899999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (557)
Q Consensus       492 ~~~lg~~~~A~~~~~~al~l~p~n~~~~~~  521 (557)
                      |..+|++++|+..|++|++++|.+......
T Consensus       382 l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~  411 (553)
T PRK12370        382 LFMAGQLEEALQTINECLKLDPTRAAAGIT  411 (553)
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCChhhHHH
Confidence            999999999999999999999998755433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.86  E-value=5.5e-08  Score=92.48  Aligned_cols=86  Identities=17%  Similarity=0.207  Sum_probs=68.2

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      ..+.++|.++..++++++|+..+.+++..+|++..+++.+|.++..+|++++|+..+++++.+.|.+......+..+...
T Consensus       136 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (234)
T TIGR02521       136 RSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARA  215 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34677888888999999999999999988888888888899999999999999999999888888776666555555554


Q ss_pred             HHHHHH
Q 008689          529 MKEYNK  534 (557)
Q Consensus       529 ~~~~~~  534 (557)
                      .....+
T Consensus       216 ~~~~~~  221 (234)
T TIGR02521       216 LGDVAA  221 (234)
T ss_pred             HhhHHH
Confidence            444333

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.85  E-value=6.2e-08  Score=92.13  Aligned_cols=95  Identities=20%  Similarity=0.242  Sum_probs=69.9

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccC--CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD--SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~--p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ++.+++.++..++++++|+..+.+++...  +....+++.+|.++..+|++++|+..|.+++..+|++......+..+..
T Consensus       101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  180 (234)
T TIGR02521       101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYY  180 (234)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHH
Confidence            46678888888888888888888887743  4556778888888888888888888888888888888777777777666


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008689          528 KMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       528 ~~~~~~~~~~~~~~~mf~  545 (557)
                      ...+..+... .+.++..
T Consensus       181 ~~~~~~~A~~-~~~~~~~  197 (234)
T TIGR02521       181 LRGQYKDARA-YLERYQQ  197 (234)
T ss_pred             HcCCHHHHHH-HHHHHHH
Confidence            6555554442 4444443

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.83  E-value=1.4e-08  Score=78.53  Aligned_cols=72  Identities=26%  Similarity=0.411  Sum_probs=65.9

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      |...|++.++|++|+..+++++.++|+++.+++.+|.+|..+|+|.+|+++|+++++++|++..+......+
T Consensus         1 l~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    1 LKQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             CHHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            356789999999999999999999999999999999999999999999999999999999998776655543

>PRK01490 tig trigger factor; Provisional

Probab=98.83  E-value=5e-09  Score=110.38  Aligned_cols=99  Identities=25%  Similarity=0.445  Sum_probs=85.2

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~  131 (557)
                      .++.||.|.++|+++. +|+.|+++..  .++.|.+|.+.+++||+++|.||++|++++|.++++..|+....     ++
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~--~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l-----ag  228 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKA--EDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL-----AG  228 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCC--CceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC-----CC
Confidence            5789999999999997 8998887754  68999999999999999999999999999999999999987665     45


Q ss_pred             CcEEEEEEEEEeeeccccccccceeee
Q 008689          132 ATLQFDVELLSWTSVKDICKDGGIIKK  158 (557)
Q Consensus       132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~  158 (557)
                      .++.|.|+|.++........++.+++.
T Consensus       229 k~~~f~v~v~~V~~~~~pel~Defak~  255 (435)
T PRK01490        229 KEATFKVTVKEVKEKELPELDDEFAKK  255 (435)
T ss_pred             CeEEEEEEEEEeccCCCCCCCHHHHHh
Confidence            899999999999876555555665553

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.83  E-value=5.3e-08  Score=97.28  Aligned_cols=112  Identities=13%  Similarity=0.018  Sum_probs=92.6

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q 008689          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (557)
Q Consensus       413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~  492 (557)
                      ...+.++..+.+++...+.+.           ......|+++|.+|..+|++.+|+.+++++++++|+++.+|+.+|.+|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~-----------~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~  108 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTD-----------EERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYL  108 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCc-----------HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence            356778888888886433222           123455899999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       493 ~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      ..+|++++|++.|++|++++|++..+...+..+.....+.++.
T Consensus       109 ~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA  151 (296)
T PRK11189        109 TQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELA  151 (296)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999999999988887777765554444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.81  E-value=3e-08  Score=86.68  Aligned_cols=95  Identities=15%  Similarity=0.021  Sum_probs=84.4

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +.++|.++++.+++++|+..+.+++..+|.+..+++++|.++..++++++|+..|+++++++|++......+..+.....
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g   99 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLALG   99 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999988887776


Q ss_pred             HHHHHHHHHHHHHhhh
Q 008689          531 EYNKKEAKFYGNMFAK  546 (557)
Q Consensus       531 ~~~~~~~~~~~~mf~~  546 (557)
                      +.++... .|.+.+..
T Consensus       100 ~~~~A~~-~~~~al~~  114 (135)
T TIGR02552       100 EPESALK-ALDLAIEI  114 (135)
T ss_pred             CHHHHHH-HHHHHHHh
Confidence            6655543 55555544

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.79  E-value=3.3e-07  Score=88.36  Aligned_cols=130  Identities=17%  Similarity=0.240  Sum_probs=105.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|.+|+..|++.+...|...            ......+++|.+|+++++|.+|+..+++.++.+
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------------~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~   99 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------------YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   99 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            44577889999999999999999999999877543            233346799999999999999999999999999


Q ss_pred             CCC---hHHHHHHHHHHHhcCC------------------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHH
Q 008689          479 SRN---VKALYRRAQAYIQMAD------------------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       479 p~~---~ka~~~~g~a~~~lg~------------------~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~  534 (557)
                      |++   ..|+|.+|.++..++.                  ..+|++.|++.++..|+..   +++..+..|+.++.+.+-
T Consensus       100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~  179 (243)
T PRK10866        100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEL  179 (243)
T ss_pred             cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHH
Confidence            887   6689999999876651                  2578899999999999986   666667777777777665


Q ss_pred             HHHHHH
Q 008689          535 KEAKFY  540 (557)
Q Consensus       535 ~~~~~~  540 (557)
                      .-.+.|
T Consensus       180 ~ia~~Y  185 (243)
T PRK10866        180 SVAEYY  185 (243)
T ss_pred             HHHHHH
Confidence            444444

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.79  E-value=1.5e-07  Score=91.43  Aligned_cols=114  Identities=13%  Similarity=0.082  Sum_probs=95.8

Q ss_pred             hhhHHHHHHH-HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          400 GKKKEQGNTL-FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       400 ~~~k~~G~~~-~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ....+.+..+ ++.|+|.+|+..|++.+...|.+..            ...+++.+|.+|+.+++|++|+..+.+++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~------------a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y  210 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY------------QPNANYWLGQLNYNKGKKDDAAYYFASVVKNY  210 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            3345556665 6679999999999999999886542            22347899999999999999999999999887


Q ss_pred             CCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          479 SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       479 p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      |++   ..|++++|.++..+|++++|+..|+++++..|++..+.....++
T Consensus       211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~A~~rL  260 (263)
T PRK10803        211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQAQKRL  260 (263)
T ss_pred             CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHHHHH
Confidence            774   78999999999999999999999999999999997665555444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.78  E-value=4.2e-08  Score=102.10  Aligned_cols=124  Identities=18%  Similarity=0.169  Sum_probs=110.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .-.++.-.|..|+++++|+.|.-+|++|+.+.|.+...               ..-++..|.++|+.++|+..+++|+.+
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi---------------~~~~g~~~~~~k~~d~AL~~~~~A~~l  552 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVI---------------LCHIGRIQHQLKRKDKALQLYEKAIHL  552 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhH---------------HhhhhHHHHHhhhhhHHHHHHHHHHhc
Confidence            44667778888889999999999999999888765533               456799999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      ||.|+-.-|.+|..+..+++|++|+..|+...++-|++..+...+.++.+++......-
T Consensus       553 d~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al  611 (638)
T KOG1126|consen  553 DPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL  611 (638)
T ss_pred             CCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence            99999999999999999999999999999999999999999999999988887665544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=1.3e-08  Score=104.22  Aligned_cols=98  Identities=16%  Similarity=0.158  Sum_probs=91.4

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      .--.|..|+-.++|++|+.||+.||...|.+...               ++.||+....-.+..+|+..|++||++.|..
T Consensus       433 Q~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~l---------------WNRLGAtLAN~~~s~EAIsAY~rALqLqP~y  497 (579)
T KOG1125|consen  433 QSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLL---------------WNRLGATLANGNRSEEAISAYNRALQLQPGY  497 (579)
T ss_pred             HhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHH---------------HHHhhHHhcCCcccHHHHHHHHHHHhcCCCe
Confidence            3457889999999999999999999998877654               8899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      +.+.|++|.+++.+|-|++|.++|-.||.+.+.
T Consensus       498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            999999999999999999999999999999876

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.77  E-value=6.2e-08  Score=107.30  Aligned_cols=115  Identities=21%  Similarity=0.190  Sum_probs=75.1

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH----HHHHHHHHHccCCC
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ----AEKLCTKVLDLDSR  480 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~----A~~~~~~al~~~p~  480 (557)
                      .|..+++.|++++|+..|.+++...+.+.               .+++++|.+|..+|++++    |+..|++++.++|+
T Consensus       218 l~~~l~~~g~~~eA~~~~~~al~~~p~~~---------------~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        218 AVDTLCAVGKYQEAIQTGESALARGLDGA---------------ALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            46677788888888888888887655332               235566666666666664    56666666666666


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      +..++..+|.++..+|++++|+..|++++.++|++..+...+..+...+.+..+
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~e  336 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTA  336 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            666666666666666666666666666666666666666665555544444433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.74  E-value=3.6e-07  Score=85.86  Aligned_cols=130  Identities=20%  Similarity=0.245  Sum_probs=102.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|.+|+..|++.+...|.+..            ...+.+.+|.+|++.++|..|+..+++.+...
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------------a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y   72 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------------APQAQLMLAYAYYKQGDYEEAIAAYERFIKLY   72 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            567889999999999999999999999998886553            23346789999999999999999999999999


Q ss_pred             CCC---hHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          479 SRN---VKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFY  540 (557)
Q Consensus       479 p~~---~ka~~~~g~a~~~lg-----------~~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~~~~~~~  540 (557)
                      |++   ..|+|.+|.++..+.           ...+|+..|+..+...|++.   ++...+..|..++.+.+-.-.+.|
T Consensus        73 P~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y  151 (203)
T PF13525_consen   73 PNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFY  151 (203)
T ss_dssp             TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            987   469999999987764           34589999999999999986   666677778777777665544444

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.74  E-value=1.1e-07  Score=105.23  Aligned_cols=116  Identities=11%  Similarity=0.050  Sum_probs=90.1

Q ss_pred             HhhhHHHHHHHHHcCcHHH----HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYAR----ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~----A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      ...+...|..++..|++.+    |+..|++|+...|.+.               .++.++|.++.+++++++|+..++++
T Consensus       246 ~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~---------------~a~~~lg~~l~~~g~~~eA~~~l~~a  310 (656)
T PRK15174        246 AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV---------------RIVTLYADALIRTGQNEKAIPLLQQS  310 (656)
T ss_pred             HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3445667888888898885    7888999998877543               23778888888888888888888888


Q ss_pred             HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +.++|++..+++.+|.+|..+|++++|++.|++++..+|++......+..+...+
T Consensus       311 l~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~  365 (656)
T PRK15174        311 LATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA  365 (656)
T ss_pred             HHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence            8888888888888888888888888888888888888888765444444343333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.73  E-value=2.5e-07  Score=79.56  Aligned_cols=109  Identities=17%  Similarity=0.213  Sum_probs=93.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+.+.|...++.|+|..|+..|+....-.|...-.            ..+.++|+-+|++.++|.+|+..+++-++++
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya------------~qAqL~l~yayy~~~~y~~A~a~~~rFirLh   77 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA------------EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH   77 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            4567888999999999999999999888777655432            2346789999999999999999999999999


Q ss_pred             CCC---hHHHHHHHHHHHhcCC---------------HHHHHHHHHHHHHhCCCCHHHH
Q 008689          479 SRN---VKALYRRAQAYIQMAD---------------LDLAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       479 p~~---~ka~~~~g~a~~~lg~---------------~~~A~~~~~~al~l~p~n~~~~  519 (557)
                      |+|   .-|+|++|.+++.+..               ..+|..+|++.+...|++.-+.
T Consensus        78 P~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~  136 (142)
T PF13512_consen   78 PTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAA  136 (142)
T ss_pred             CCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            998   5599999999999987               8899999999999999986433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.73  E-value=1.9e-07  Score=85.62  Aligned_cols=138  Identities=17%  Similarity=0.209  Sum_probs=107.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+.+.|..++.+|+|++|...|.+|+..-....             ....+.|++.|.+++|+++.|..+++++|++
T Consensus       102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~-------------~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~  168 (250)
T COG3063         102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGE-------------PSDTLENLGLCALKAGQFDQAEEYLKRALEL  168 (250)
T ss_pred             ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCC-------------cchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence            345677777777788888888888877775321111             2234889999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG  550 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~  550 (557)
                      +|+++-++..++..++.-|+|-.|...+++...--+-+.+...+.-++.+++......  ..|..-+++....
T Consensus       169 dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a--~~Y~~qL~r~fP~  239 (250)
T COG3063         169 DPQFPPALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDRAAA--QRYQAQLQRLFPY  239 (250)
T ss_pred             CcCCChHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccHHHH--HHHHHHHHHhCCC
Confidence            9999999999999999999999999999999988777766666666666666555443  4677777766543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.72  E-value=3e-08  Score=75.42  Aligned_cols=67  Identities=31%  Similarity=0.388  Sum_probs=61.5

Q ss_pred             HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ++.|+|++|+..+++++..+|+|..+++.+|.||..+|++++|+..+++++..+|+++.+...+.++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~i   68 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQI   68 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhcC
Confidence            5789999999999999999999999999999999999999999999999999999988777766553

...

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.70  E-value=4.6e-08  Score=97.03  Aligned_cols=132  Identities=19%  Similarity=0.172  Sum_probs=98.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ...+...|..+.+.|++++|++.|++|++..|.+...               ..+++.++...++++++...+.......
T Consensus       146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~---------------~~~l~~~li~~~~~~~~~~~l~~~~~~~  210 (280)
T PF13429_consen  146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDA---------------RNALAWLLIDMGDYDEAREALKRLLKAA  210 (280)
T ss_dssp             HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHCTTCHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH---------------HHHHHHHHHHCCChHHHHHHHHHHHHHC
Confidence            4557789999999999999999999999998865532               5678889999999999888888888887


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      |.++..+..+|.+|..+|++++|+..|+++++.+|+|..+...+..+.....+.++... .+++.+..
T Consensus       211 ~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~-~~~~~~~~  277 (280)
T PF13429_consen  211 PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALR-LRRQALRL  277 (280)
T ss_dssp             HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------------------
T ss_pred             cCHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence            88888899999999999999999999999999999999999999988877777766553 55555443

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.69  E-value=1.7e-07  Score=92.44  Aligned_cols=144  Identities=18%  Similarity=0.207  Sum_probs=108.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+.+++-+|..+|-..+...|+.+|.+++++.|.....   ...-...-.....-+.|.-.++.|+|..|-+.|..+|.+
T Consensus       202 n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~s---k~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~i  278 (486)
T KOG0550|consen  202 NAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKS---KSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNI  278 (486)
T ss_pred             hhHHHHhcccccccccchHHHHHHHhhhhccChhhhhH---HhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcC
Confidence            46778889999999999999999999999998754321   111111123334557888899999999999999999999


Q ss_pred             CCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          478 DSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       478 ~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      ||+|    ++.|++||.++..||+..+|+.+++.|++|||.--.+...-.+|...+.+.+..- +-|.+..+
T Consensus       279 dP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV-~d~~~a~q  349 (486)
T KOG0550|consen  279 DPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV-EDYEKAMQ  349 (486)
T ss_pred             CccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence            9986    7889999999999999999999999999999987444444444555555544433 23444443

>PLN02789 farnesyltranstransferase

Probab=98.68  E-value=4e-07  Score=91.18  Aligned_cols=116  Identities=13%  Similarity=-0.030  Sum_probs=96.6

Q ss_pred             HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH--HHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY--KQAEKLCTKVL  475 (557)
Q Consensus       399 a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~--~~A~~~~~~al  475 (557)
                      ...+..+|..+.+.+ ++++|+..+.+++...+.+...               +++++.+..+++++  ++++..++++|
T Consensus        71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqa---------------W~~R~~~l~~l~~~~~~~el~~~~kal  135 (320)
T PLN02789         71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQI---------------WHHRRWLAEKLGPDAANKELEFTRKIL  135 (320)
T ss_pred             HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHH---------------hHHHHHHHHHcCchhhHHHHHHHHHHH
Confidence            445666777777766 5788888888888776654433               77888888888874  78899999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +.+|.|..||+.|+.++..+++|++|++++.++++++|.|..++.....+..++
T Consensus       136 ~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~  189 (320)
T PLN02789        136 SLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS  189 (320)
T ss_pred             HhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999998888777665443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.66  E-value=2.8e-07  Score=80.70  Aligned_cols=96  Identities=10%  Similarity=0.030  Sum_probs=85.1

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      .+.+|.-++..|++++|...++.++.+||.+...||++|.|+..+|+|++|+..|.+|+.++|+++.....+..|.-.+.
T Consensus        38 lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG  117 (157)
T PRK15363         38 LYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACD  117 (157)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999888777


Q ss_pred             HHHHHHHHHHHHHhhhc
Q 008689          531 EYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       531 ~~~~~~~~~~~~mf~~~  547 (557)
                      +.....+ .|+.....+
T Consensus       118 ~~~~A~~-aF~~Ai~~~  133 (157)
T PRK15363        118 NVCYAIK-ALKAVVRIC  133 (157)
T ss_pred             CHHHHHH-HHHHHHHHh
Confidence            6665553 555555554

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.64  E-value=6.3e-07  Score=106.02  Aligned_cols=126  Identities=21%  Similarity=0.213  Sum_probs=102.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHH-HHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      +..+...|..+++.|++++|+..|++|++..+......  .+ ..+......+..+++.++++.+++++|+..|++++.+
T Consensus       303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~--~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~  380 (1157)
T PRK11447        303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRD--KWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV  380 (1157)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchh--HHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45677889999999999999999999998876543211  11 1111122233456788999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      +|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+.
T Consensus       381 ~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~  429 (1157)
T PRK11447        381 DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY  429 (1157)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999987777666654

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.64  E-value=7.7e-07  Score=95.68  Aligned_cols=116  Identities=19%  Similarity=0.194  Sum_probs=77.9

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh----------HHHHHHHHHHHHH---------HhhHHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD----------EEKKQAKALKVAC---------NLNNAACK  458 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~----------~~~~~~~~~~~~~---------~~nla~~~  458 (557)
                      .+..+..+||.+|.+|+++.|...+.++++..|.......          +..+-+....+.+         +.-+|...
T Consensus       138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls  217 (895)
T KOG2076|consen  138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            3778889999999999999999999999999886654311          0011111111111         11223333


Q ss_pred             HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p  513 (557)
                      .+++++.+|+-+|++||.++|.|.+.+++++..|.++|++..|...|.+++.++|
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            4466677777777777777777777777777777777777777777777777777

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.63  E-value=7.5e-07  Score=92.71  Aligned_cols=80  Identities=20%  Similarity=0.142  Sum_probs=57.5

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEK  528 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~  528 (557)
                      .+.++|.++++++++++|+.+++++++.+|++..+++.+|.+|..+|++++|++.|++++..+|.+. .+...+..+...
T Consensus       182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~  261 (389)
T PRK11788        182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQA  261 (389)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHH
Confidence            4567777778888888888888888887787778888888888888888888888888887777653 333344444333


Q ss_pred             H
Q 008689          529 M  529 (557)
Q Consensus       529 ~  529 (557)
                      .
T Consensus       262 ~  262 (389)
T PRK11788        262 L  262 (389)
T ss_pred             c
Confidence            3

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.62  E-value=6.6e-07  Score=93.10  Aligned_cols=120  Identities=13%  Similarity=0.035  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH----HHHHH----HHHHHHHhhHHHHHHhh
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE----KKQAK----ALKVACNLNNAACKLKL  461 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~----~~~~~----~~~~~~~~nla~~~~k~  461 (557)
                      +...|..+++.+++++|+..|.++++..+.....            ..++    ..+..    .....++.+++.+|.++
T Consensus       183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~  262 (389)
T PRK11788        183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQAL  262 (389)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHc
Confidence            4456666667777777777777776654432110            0000    00000    00122344566666666


Q ss_pred             hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       462 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      +++++|+..+++++..+|++.. +..++.++...|++++|+..|+++++.+|++..+...+
T Consensus       263 g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~  322 (389)
T PRK11788        263 GDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLL  322 (389)
T ss_pred             CCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            6666666666666666665533 35666666666666666666666666666665444333

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.61  E-value=3.4e-07  Score=108.28  Aligned_cols=128  Identities=20%  Similarity=0.213  Sum_probs=107.8

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (557)
                      +..|..++..|++++|+..|+++++..|.+..               ++.++|.+|++++++++|+.+++++++.+|++.
T Consensus       273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~---------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~  337 (1157)
T PRK11447        273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSE---------------ALGALGQAYSQQGDRARAVAQFEKALALDPHSS  337 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcc
Confidence            35589999999999999999999998775432               378999999999999999999999999999874


Q ss_pred             H--------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          483 K--------------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       483 k--------------a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      .              .+..+|.++...|++++|++.|+++++++|++..+...+..+...+.+.++... .|.+.+..
T Consensus       338 ~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~-~y~~aL~~  414 (1157)
T PRK11447        338 NRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAER-YYQQALRM  414 (1157)
T ss_pred             chhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH-HHHHHHHh
Confidence            3              234568899999999999999999999999999888888888877776666553 56665543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.61  E-value=1e-06  Score=84.94  Aligned_cols=125  Identities=11%  Similarity=0.065  Sum_probs=101.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--------hCHHHHHHHH
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------KDYKQAEKLC  471 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~~~~~A~~~~  471 (557)
                      ..+...|..+++.++|++|+..|+++++..|.+...            ..+++++|.|+.++        +++++|++.+
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~  138 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA------------DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAF  138 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch------------HHHHHHHHHHHHHhcccccCCHHHHHHHHHHH
Confidence            456778999999999999999999999998866542            12366788888876        8999999999


Q ss_pred             HHHHccCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHH
Q 008689          472 TKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKE  531 (557)
Q Consensus       472 ~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~  531 (557)
                      ++++..+|++..++                 +.+|..|...|++.+|+..|++++...|+++   .+...+..+...+.+
T Consensus       139 ~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~  218 (235)
T TIGR03302       139 QELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGL  218 (235)
T ss_pred             HHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCC
Confidence            99999999985442                 4678999999999999999999999988753   566677777777666


Q ss_pred             HHHHH
Q 008689          532 YNKKE  536 (557)
Q Consensus       532 ~~~~~  536 (557)
                      ..+..
T Consensus       219 ~~~A~  223 (235)
T TIGR03302       219 KDLAQ  223 (235)
T ss_pred             HHHHH
Confidence            65544

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.60  E-value=9.1e-07  Score=70.52  Aligned_cols=86  Identities=34%  Similarity=0.435  Sum_probs=77.0

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +++++|.++...+++++|+..+.++++..|.+..+++.+|.++..++++++|++.|++++.+.|.+..+...+..+...+
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            47799999999999999999999999999999999999999999999999999999999999999987777777776666


Q ss_pred             HHHHHH
Q 008689          530 KEYNKK  535 (557)
Q Consensus       530 ~~~~~~  535 (557)
                      .+....
T Consensus        82 ~~~~~a   87 (100)
T cd00189          82 GKYEEA   87 (100)
T ss_pred             HhHHHH
Confidence            554443

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.60  E-value=8.4e-07  Score=102.03  Aligned_cols=122  Identities=25%  Similarity=0.323  Sum_probs=98.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..+++.|+|++|+..|.+++...+....               ++..+|.+++..++|++|+..+++++.
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~la~~~~~~~~~~~A~~~~~~~~~  187 (899)
T TIGR02917       123 GAAELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY---------------AKLGLAQLALAENRFDEARALIDEVLT  187 (899)
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh---------------hHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34667788999999999999999999999988765432               267888888888888888888888888


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                      .+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+.....+..
T Consensus       188 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~  244 (899)
T TIGR02917       188 ADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFE  244 (899)
T ss_pred             hCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHH
Confidence            888888888888888888888888888888888888888776666666554444333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.59  E-value=4.2e-07  Score=104.50  Aligned_cols=92  Identities=18%  Similarity=0.119  Sum_probs=64.3

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ++.+++..+.+.++ .+|+.++++++.+.|++...+..+|.++..+|++++|++.|+++++++|.+..+...+..+..+.
T Consensus       806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~  884 (899)
T TIGR02917       806 VLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLAT  884 (899)
T ss_pred             HHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHc
Confidence            36677777777777 66777777777777777777777777777777777777777777777777777777776666665


Q ss_pred             HHHHHHHHHHHHHH
Q 008689          530 KEYNKKEAKFYGNM  543 (557)
Q Consensus       530 ~~~~~~~~~~~~~m  543 (557)
                      .+.++... .+.+|
T Consensus       885 g~~~~A~~-~~~~~  897 (899)
T TIGR02917       885 GRKAEARK-ELDKL  897 (899)
T ss_pred             CCHHHHHH-HHHHH
Confidence            55554443 44444

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.59  E-value=4.3e-07  Score=99.73  Aligned_cols=106  Identities=10%  Similarity=-0.090  Sum_probs=97.6

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      .++.+......++.+++.+++++|+..+++++...|.+...               ++++|.|..++|+|++|+..|+++
T Consensus       116 ~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~---------------~~~~a~~l~~~g~~~~A~~~y~~~  180 (694)
T PRK15179        116 FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSARE---------------ILLEAKSWDEIGQSEQADACFERL  180 (694)
T ss_pred             CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHH---------------HHHHHHHHHHhcchHHHHHHHHHH
Confidence            34556788899999999999999999999999998876654               889999999999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      +..+|++.+++..+|.++..+|+.++|...|++|+.+...-
T Consensus       181 ~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~  221 (694)
T PRK15179        181 SRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDG  221 (694)
T ss_pred             HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcc
Confidence            99999999999999999999999999999999999986554

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.59  E-value=7.3e-07  Score=84.57  Aligned_cols=114  Identities=18%  Similarity=0.208  Sum_probs=100.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+.+.+..+++.|+|..|...|..-++-.|.+...            ..++++|+.|++.+++|+.|...+..+.+-.|
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~------------~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P  209 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYT------------PNAYYWLGESLYAQGDYEDAAYIFARVVKDYP  209 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCccc------------chhHHHHHHHHHhcccchHHHHHHHHHHHhCC
Confidence            338889999999999999999999999988876543            23589999999999999999999999999888


Q ss_pred             CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       480 ~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ++   +.++|.+|.+...+++.++|...|.++++-.|+...+......+
T Consensus       210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~~  258 (262)
T COG1729         210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVAL  258 (262)
T ss_pred             CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            77   45699999999999999999999999999999997666554444

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.58  E-value=1.1e-07  Score=95.99  Aligned_cols=125  Identities=22%  Similarity=0.117  Sum_probs=106.2

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHH
Q 008689          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAE  468 (557)
Q Consensus       392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~  468 (557)
                      ..+..+.++..+.+||..|-......|+..|.+|+...+.               .+.||.|+|++++|.+   +--.|+
T Consensus       367 ~~eL~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~---------------~~~~l~nraa~lmkRkW~~d~~~Al  431 (758)
T KOG1310|consen  367 FYELPENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPD---------------AIYLLENRAAALMKRKWRGDSYLAL  431 (758)
T ss_pred             hhhchHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccc---------------hhHHHHhHHHHHHhhhccccHHHHH
Confidence            3566788999999999999999999999999999988764               3445999999999965   778899


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      .+|-.||+++|...||+|+++.|+..++++.+|+++...+....|.+.+......-+.+.+.+
T Consensus       432 rDch~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd~a~~~~v~~l~rDi~a  494 (758)
T KOG1310|consen  432 RDCHVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTDVARQNFVLCLPRDISA  494 (758)
T ss_pred             HhHHhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchhhhhhhhhhccccchHH
Confidence            999999999999999999999999999999999999998888899776555544444444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.57  E-value=5.6e-07  Score=101.77  Aligned_cols=113  Identities=12%  Similarity=0.065  Sum_probs=101.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+.+.+++.+|+..|++++...|.+...               +.++|.+++..+++.+|+..+++++..+
T Consensus        49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~l~~~g~~~eA~~~l~~~l~~~  113 (765)
T PRK10049         49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDY---------------QRGLILTLADAGQYDEALVKAKQLVSGA  113 (765)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            3447888999999999999999999999987755432               6689999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      |++.. ++.+|.++...|++++|+..|+++++++|++..+...+..+..
T Consensus       114 P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        114 PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            99999 9999999999999999999999999999999988777766543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.57  E-value=1.2e-06  Score=91.84  Aligned_cols=146  Identities=23%  Similarity=0.234  Sum_probs=118.5

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      +..+..++..|..|...++|.+|+..|++|+.+.....-..       ....+..+.|||..|.+.|+|.+|..+|.+|+
T Consensus       238 l~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~-------h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al  310 (508)
T KOG1840|consen  238 LVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED-------HPAVAATLNNLAVLYYKQGKFAEAEEYCERAL  310 (508)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence            44566677899999999999999999999999877432211       13456678999999999999999999999998


Q ss_pred             ccC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDN---RDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       476 ~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n---~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      ++-        |.-...+.+.+..+..++++++|+..|.+++++     .++|   ..++..|+.+...+.+.++.+. +
T Consensus       311 ~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~-~  389 (508)
T KOG1840|consen  311 EIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEE-L  389 (508)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHH-H
Confidence            753        333667889999999999999999999999986     2344   3567788889999988888885 8


Q ss_pred             HHHHhhhccC
Q 008689          540 YGNMFAKMNT  549 (557)
Q Consensus       540 ~~~mf~~~~~  549 (557)
                      |++...+...
T Consensus       390 ~k~ai~~~~~  399 (508)
T KOG1840|consen  390 YKKAIQILRE  399 (508)
T ss_pred             HHHHHHHHHh
Confidence            8888887743

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.55  E-value=6.3e-07  Score=91.72  Aligned_cols=86  Identities=30%  Similarity=0.356  Sum_probs=78.2

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +...|...+..++|..|+..|+++|+++|++..+|+++|.+|..+|++++|+.++++|+.++|++..+...+..+...+.
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            44678899999999999999999999999999999999999999999999999999999999999988888888877776


Q ss_pred             HHHHHH
Q 008689          531 EYNKKE  536 (557)
Q Consensus       531 ~~~~~~  536 (557)
                      +..+..
T Consensus        85 ~~~eA~   90 (356)
T PLN03088         85 EYQTAK   90 (356)
T ss_pred             CHHHHH
Confidence            666544

>PLN02789 farnesyltranstransferase

Probab=98.54  E-value=1.1e-06  Score=88.14  Aligned_cols=121  Identities=11%  Similarity=0.085  Sum_probs=102.3

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCCCChHHHHH
Q 008689          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYR  487 (557)
Q Consensus       409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~  487 (557)
                      +...+++++|+..+.++|.+.|.+..               ++++++.++.+++ .+++++..+++++..+|+|..+|+.
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~yt---------------aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~  111 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYT---------------VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHH  111 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHH---------------HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHH
Confidence            45577999999999999999886543               3889999999998 6899999999999999999999999


Q ss_pred             HHHHHHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          488 RAQAYIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       488 ~g~a~~~lg~~--~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      |+.++.++++.  +++++.++++++++|+|-.+....+-+...+...++ +-+.+.+++.
T Consensus       112 R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~e-eL~~~~~~I~  170 (320)
T PLN02789        112 RRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWED-ELEYCHQLLE  170 (320)
T ss_pred             HHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHH-HHHHHHHHHH
Confidence            99999999974  789999999999999999998888888777765543 3445555543

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.53  E-value=1.5e-06  Score=94.23  Aligned_cols=119  Identities=24%  Similarity=0.242  Sum_probs=105.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+.-.+|.+|-.|+|+.+...+..|+.....            ..+....++++|.+|..+|+|++|..+|.+++..++
T Consensus       271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~------------~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~  338 (1018)
T KOG2002|consen  271 VALNHLANHFYFKKDYERVWHLAEHAIKNTEN------------KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADN  338 (1018)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh------------hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCC
Confidence            45667788999999999999999998876422            234556688999999999999999999999999999


Q ss_pred             CC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          480 RN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       480 ~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      ++ .-+++.+|+.|++.|+++.|+.+|+++++..|+|.+....|+.+.....
T Consensus       339 d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~  390 (1018)
T KOG2002|consen  339 DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSA  390 (1018)
T ss_pred             CCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhh
Confidence            99 9999999999999999999999999999999999999999999887774

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.53  E-value=3.3e-07  Score=92.97  Aligned_cols=63  Identities=17%  Similarity=0.072  Sum_probs=60.0

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH---HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA---LYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka---~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      ..++|+|.+|+++++|++|+..|++||+++|++..+   ||++|.||..+|++++|+++|++|+++
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            348899999999999999999999999999999865   999999999999999999999999998

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.52  E-value=2e-07  Score=72.95  Aligned_cols=66  Identities=24%  Similarity=0.270  Sum_probs=57.7

Q ss_pred             HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      ....+|+|+|.+|..+++|++|+.++++++.+.       |.-+.+++++|.+|..+|++++|++.+++|+++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            356779999999999999999999999998752       223789999999999999999999999999986

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.52  E-value=9.5e-07  Score=80.43  Aligned_cols=112  Identities=12%  Similarity=0.011  Sum_probs=88.3

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---  481 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---  481 (557)
                      ..+.+|-.+.|..+...+...++...             ......+++++|.++..+++|++|+..+.+++.+.|+.   
T Consensus         5 ~~~~~~~~~~~~~~~~~l~~~~~~~~-------------~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~   71 (168)
T CHL00033          5 QRNDNFIDKTFTIVADILLRILPTTS-------------GEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDR   71 (168)
T ss_pred             cccccccccccccchhhhhHhccCCc-------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhh
Confidence            34566666777777776644433211             12255668999999999999999999999999887653   


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ..+++++|.+|..+|++++|++.|++|+.++|.+......+..+...+
T Consensus        72 ~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~  119 (168)
T CHL00033         72 SYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYR  119 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            458999999999999999999999999999999987777777666633

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.47  E-value=2.3e-06  Score=72.47  Aligned_cols=96  Identities=17%  Similarity=0.168  Sum_probs=79.5

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYK  523 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~  523 (557)
                      .++++|..++++++|++|+..|.+++..+|++   ..+++.+|.++...+++++|+..|++++..+|++   ..+...+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            47899999999999999999999999998877   6799999999999999999999999999999986   35666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhh
Q 008689          524 TLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       524 ~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      .+...+.+..+.. +.|..++..
T Consensus        84 ~~~~~~~~~~~A~-~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAK-ATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHH-HHHHHHHHH
Confidence            6766655554444 356655554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=3.7e-07  Score=90.67  Aligned_cols=118  Identities=18%  Similarity=0.169  Sum_probs=103.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+.+.||..|..|+|++|++.|++|+.-...               ...+++|++..+-++++.++|+.++-+.-.+-
T Consensus       490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndas---------------c~ealfniglt~e~~~~ldeald~f~klh~il  554 (840)
T KOG2003|consen  490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDAS---------------CTEALFNIGLTAEALGNLDEALDCFLKLHAIL  554 (840)
T ss_pred             HHHhhcCCceeeecCcHHHHHHHHHHHHcCchH---------------HHHHHHHhcccHHHhcCHHHHHHHHHHHHHHH
Confidence            456778999999999999999999999975432               23347899999999999999999999987777


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      -+|+..++.+|.+|..+.+-..|+++|-+|.++-|+++.+...|..+..+...
T Consensus       555 ~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegd  607 (840)
T KOG2003|consen  555 LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD  607 (840)
T ss_pred             HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence            78999999999999999999999999999999999999999998888665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.44  E-value=1.4e-06  Score=68.20  Aligned_cols=73  Identities=25%  Similarity=0.310  Sum_probs=61.3

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+.+.|..++..|+|++|+..|++|+++......        .....+.++.|+|.||..+|++++|+.+++++++
T Consensus         3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~--------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD--------DHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT--------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC--------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            46788999999999999999999999999999443322        1234577899999999999999999999999987


Q ss_pred             c
Q 008689          477 L  477 (557)
Q Consensus       477 ~  477 (557)
                      +
T Consensus        75 i   75 (78)
T PF13424_consen   75 I   75 (78)
T ss_dssp             H
T ss_pred             h
Confidence            5

...

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.44  E-value=8.9e-07  Score=80.22  Aligned_cols=112  Identities=21%  Similarity=0.120  Sum_probs=101.0

Q ss_pred             ccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (557)
Q Consensus       387 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (557)
                      .-.++.++   +|.-+.++|+.|-..|-+..|...|.+++.+.|..+.               +++-++..+...++|+.
T Consensus        56 ~~~l~~ee---RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~---------------vfNyLG~Yl~~a~~fda  117 (297)
T COG4785          56 SRALTDEE---RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE---------------VFNYLGIYLTQAGNFDA  117 (297)
T ss_pred             hccCChHH---HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH---------------HHHHHHHHHHhcccchH
Confidence            34455554   4888999999999999999999999999999876554               37788999999999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      |.+.++.++++||.+.-|..+||.+++.-|+|.-|.+++.+-..-||+++
T Consensus       118 a~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP  167 (297)
T COG4785         118 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP  167 (297)
T ss_pred             HHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence            99999999999999999999999999999999999999999999999987

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.43  E-value=2.1e-06  Score=97.15  Aligned_cols=108  Identities=11%  Similarity=0.044  Sum_probs=97.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+...|++++|+..|.+++...|.+..               +++++|.++..+|++++|+..+++++.++|
T Consensus       360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~---------------l~~~lA~l~~~~g~~~~A~~~l~~al~l~P  424 (765)
T PRK10049        360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG---------------LRIDYASVLQARGWPRAAENELKKAEVLEP  424 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence            34457788889999999999999999998776542               478999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      ++..+++.+|.+++.+++|++|++.++++++.+|+|..+...-
T Consensus       425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~  467 (765)
T PRK10049        425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLA  467 (765)
T ss_pred             CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            9999999999999999999999999999999999998655443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.43  E-value=2.6e-07  Score=69.53  Aligned_cols=64  Identities=20%  Similarity=0.267  Sum_probs=56.0

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (557)
                      ..|..+++.|+|++|+..|+++++..|.+.               .+++.+|.|+..+|+|++|+..+++++..+|+|+
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQDPDNP---------------EAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH---------------HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            578999999999999999999999876543               3488999999999999999999999999999874

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.43  E-value=2e-06  Score=85.28  Aligned_cols=148  Identities=23%  Similarity=0.302  Sum_probs=110.6

Q ss_pred             HHHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          397 EAAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~-~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ..|..+.+.|..+.+. +++++|+.+|.+|+++......         ......|+.++|.++.++++|++|+..+.++.
T Consensus       112 ~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~---------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~  182 (282)
T PF14938_consen  112 QAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS---------PHSAAECLLKAADLYARLGRYEEAIEIYEEVA  182 (282)
T ss_dssp             HHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT----------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC---------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4577788888888888 8999999999999999875442         23456778899999999999999999999997


Q ss_pred             ccCCC------ChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          476 DLDSR------NVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       476 ~~~p~------~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      ...-+      +++ .+++.+.|++.+|++..|.+.|++....+|.... ..+...+...+...+..+...|........
T Consensus       183 ~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~e~f~~av~~~d  261 (282)
T PF14938_consen  183 KKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDVEAFTEAVAEYD  261 (282)
T ss_dssp             HTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-CCCHHHHCHHHT
T ss_pred             HHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCHHHHHHHHHHHc
Confidence            64321      244 4578899999999999999999999999997543 344555666777777777777777777777


Q ss_pred             CCCCCC
Q 008689          549 TGSDLD  554 (557)
Q Consensus       549 ~~~~~d  554 (557)
                      +...+|
T Consensus       262 ~~~~ld  267 (282)
T PF14938_consen  262 SISRLD  267 (282)
T ss_dssp             TSS---
T ss_pred             ccCccH
Confidence            666665

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.39  E-value=3e-06  Score=77.48  Aligned_cols=84  Identities=17%  Similarity=0.162  Sum_probs=73.4

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~  523 (557)
                      ...+++++|.++...++|++|+.+|++++...|+.   ..+++++|.+|..+|++++|+..|.+|+.++|++......+.
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg  113 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIA  113 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence            45568999999999999999999999999887653   579999999999999999999999999999999987777776


Q ss_pred             HHHHHHH
Q 008689          524 TLKEKMK  530 (557)
Q Consensus       524 ~l~~~~~  530 (557)
                      .+...+.
T Consensus       114 ~~~~~~g  120 (172)
T PRK02603        114 VIYHKRG  120 (172)
T ss_pred             HHHHHcC
Confidence            6655543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.39  E-value=1.5e-06  Score=92.00  Aligned_cols=103  Identities=23%  Similarity=0.195  Sum_probs=83.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH--HHHHHHc
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK--LCTKVLD  476 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~--~~~~al~  476 (557)
                      +..+..+|..+..+|++.+|...|..|+.+.|.+...               ...+|.|+++.|+-..|..  ....+++
T Consensus       684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s---------------~~Ala~~lle~G~~~la~~~~~L~dalr  748 (799)
T KOG4162|consen  684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS---------------MTALAELLLELGSPRLAEKRSLLSDALR  748 (799)
T ss_pred             HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH---------------HHHHHHHHHHhCCcchHHHHHHHHHHHh
Confidence            4556778888888888888888888888887766544               5678888888888777777  8888888


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      +||.|.+|||.+|.++.++|+.+.|-++|..|+.|++.++
T Consensus       749 ~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P  788 (799)
T KOG4162|consen  749 LDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP  788 (799)
T ss_pred             hCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence            8888888888888888888888888888888888887775

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.36  E-value=3.8e-06  Score=74.39  Aligned_cols=97  Identities=22%  Similarity=0.199  Sum_probs=57.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ......|..++..|+|++|+..|++++...+. .           .+...+.++||.+++.+++|++|+..++.+ .-.+
T Consensus        49 ~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d-~-----------~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~  115 (145)
T PF09976_consen   49 LAALQLAKAAYEQGDYDEAKAALEKALANAPD-P-----------ELKPLARLRLARILLQQGQYDEALATLQQI-PDEA  115 (145)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCC-H-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcc
Confidence            33445666666667777777777666653311 0           223334556666777777777777666552 2233


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                      -...++..+|.+|..+|++++|+..|++|+
T Consensus       116 ~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  116 FKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            345556666777777777777777666653

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.36  E-value=4.2e-06  Score=93.76  Aligned_cols=150  Identities=13%  Similarity=0.039  Sum_probs=107.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-----------Ch-HH-HHHHHH------HHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----------GD-EE-KKQAKA------LKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-----------~~-~~-~~~~~~------~~~~~~~nla~~~~  459 (557)
                      +.....++...+++|+|..|+..|.++++..|.....           .. ++ ...++.      .-...+..+|.+|.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            4577889999999999999999999999988876311           00 00 000111      01222334477888


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      .+++|++|+..|+++++.+|+|+.+++-++.+|..+++.++|++.++++...+|.+... ..+..+...+.+..+ ....
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~~~~~-AL~~  191 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATDRNYD-ALQA  191 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcchHHH-HHHH
Confidence            89999999999999999999999999988899999999999999999999999987654 334444433333322 5567


Q ss_pred             HHHHhhhccCC
Q 008689          540 YGNMFAKMNTG  550 (557)
Q Consensus       540 ~~~mf~~~~~~  550 (557)
                      |++++......
T Consensus       192 ~ekll~~~P~n  202 (822)
T PRK14574        192 SSEAVRLAPTS  202 (822)
T ss_pred             HHHHHHhCCCC
Confidence            88887765433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.36  E-value=1.5e-06  Score=91.58  Aligned_cols=133  Identities=16%  Similarity=0.231  Sum_probs=111.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +.+.+..|+..+.+++|.+|.++++.++++.+-               ....|++++.|.+++++++.|..+|.+++.++
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~npl---------------q~~~wf~~G~~ALqlek~q~av~aF~rcvtL~  549 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPL---------------QLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE  549 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCcc---------------chhHHHhccHHHHHHhhhHHHHHHHHHHhhcC
Confidence            334555666677789999999999999887653               33448999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      |+|..+|.+++.+|+.+++-.+|...++.|++.+-++..++.++-.+..........-+ .|.++...-
T Consensus       550 Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~-A~~rll~~~  617 (777)
T KOG1128|consen  550 PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIK-AYHRLLDLR  617 (777)
T ss_pred             CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHH-HHHHHHHhh
Confidence            99999999999999999999999999999999998888888888888777777666553 666666443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.35  E-value=7.2e-06  Score=83.14  Aligned_cols=130  Identities=15%  Similarity=0.036  Sum_probs=105.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ....+-.+..+|..|+++.|...+...+...|.+..+               ..-++..+++.|+.++|++.+++++.++
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~---------------~~~~~~i~~~~nk~~~A~e~~~kal~l~  370 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYY---------------LELAGDILLEANKAKEAIERLKKALALD  370 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            3445667778888888888888888877666654422               3356788999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~m  543 (557)
                      |+..-..+++|++|+++|++.+|+..++..+.-+|+|+..+..|.+....+....+.....-..+
T Consensus       371 P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~  435 (484)
T COG4783         371 PNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY  435 (484)
T ss_pred             CCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence            99988899999999999999999999999999999999999999988888776666554433333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.35  E-value=6.1e-06  Score=89.58  Aligned_cols=145  Identities=19%  Similarity=0.213  Sum_probs=118.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+.+.|..+|..|++..|..+|.+|+..+......  ++.   +...+++.+|+|.|.-.+.++..|...|..++..+|
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~--de~---~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp  527 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANK--DEG---KSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHP  527 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCc--ccc---ccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCc
Confidence            457789999999999999999999999874422211  111   234466788999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG  550 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~  550 (557)
                      ..+.+|.|+|......++..+|...++.++.++..|++++..++.+..+..+....++ .|...+++....
T Consensus       528 ~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k-~f~~i~~~~~~~  597 (1018)
T KOG2002|consen  528 GYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKK-KFETILKKTSTK  597 (1018)
T ss_pred             hhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccccc-HHHHHHhhhccC
Confidence            9999999999777778899999999999999999999999999988777766665543 555566555433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.34  E-value=7e-07  Score=67.77  Aligned_cols=67  Identities=33%  Similarity=0.369  Sum_probs=57.5

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHH
Q 008689          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (557)
Q Consensus       409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~  488 (557)
                      +++.|+|++|+..|++++...|.+...               ++++|.||++.|++++|...+.+++..+|++..++.-+
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEA---------------RLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHH---------------HHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            478999999999999999998865533               77999999999999999999999999999987766655


Q ss_pred             HH
Q 008689          489 AQ  490 (557)
Q Consensus       489 g~  490 (557)
                      ++
T Consensus        66 a~   67 (68)
T PF14559_consen   66 AQ   67 (68)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

...

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.33  E-value=4.7e-06  Score=74.03  Aligned_cols=99  Identities=22%  Similarity=0.227  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh----------hCHHHHHHHHHHHHccCCCChHH
Q 008689          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~----------~~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      |+.|.+.|..+....|.+...               ++|-|.+++.+          .-+++|+.-+++||.++|+...|
T Consensus         7 FE~ark~aea~y~~nP~Dadn---------------L~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdA   71 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADN---------------LTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDA   71 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHH---------------HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHH---------------HHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHH
Confidence            566777777777766654321               33444444333          45788999999999999999999


Q ss_pred             HHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          485 LYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       485 ~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      ++.+|.||..++.           |++|.++|++|..++|+|...++.|....+.
T Consensus        72 lw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~ka  126 (186)
T PF06552_consen   72 LWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKA  126 (186)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhh
Confidence            9999999999975           7899999999999999999888888776443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.30  E-value=4.3e-06  Score=78.42  Aligned_cols=85  Identities=15%  Similarity=0.165  Sum_probs=76.4

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      -++..++..|+|..|+..+.++..++|+++++|.-+|.+|.++|++++|...|.+|+++.|+++.+..++.-..-...+.
T Consensus       105 ~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~  184 (257)
T COG5010         105 AQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDL  184 (257)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCH
Confidence            37888999999999999999999999999999999999999999999999999999999999999999888776555555


Q ss_pred             HHHHH
Q 008689          533 NKKEA  537 (557)
Q Consensus       533 ~~~~~  537 (557)
                      +..++
T Consensus       185 ~~A~~  189 (257)
T COG5010         185 EDAET  189 (257)
T ss_pred             HHHHH
Confidence            55443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.28  E-value=9e-06  Score=78.20  Aligned_cols=116  Identities=19%  Similarity=0.145  Sum_probs=96.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHHHHHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKV  474 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~a  474 (557)
                      .++.+.-.|..|+..+++..|...|.+|+++.+.+...               +.-+|.++..+.   .-.++...++++
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~---------------~~g~aeaL~~~a~~~~ta~a~~ll~~a  219 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEI---------------LLGLAEALYYQAGQQMTAKARALLRQA  219 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence            35667789999999999999999999999998876643               445555544443   467899999999


Q ss_pred             HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      |.+||+|+.+++-+|..+...|+|.+|...+++.+.+.|.+..-...+++...+
T Consensus       220 l~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~  273 (287)
T COG4235         220 LALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR  273 (287)
T ss_pred             HhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999887655555554333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.27  E-value=2.1e-05  Score=82.68  Aligned_cols=110  Identities=25%  Similarity=0.231  Sum_probs=92.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...|..+.+.|..|++.|+|.+|..+|++|+++.........       .-....++|+++.+..+++|++|+.++.+++
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~-------~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al  352 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH-------PEVAAQLSELAAILQSMNEYEEAKKLLQKAL  352 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh-------HHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            456888999999999999999999999999999876322222       2344558899999999999999999999998


Q ss_pred             ccC-----C---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          476 DLD-----S---RNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       476 ~~~-----p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      ++-     +   .-.+.+-++|.+|..+|+|++|.+.|++|+...
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~  397 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQIL  397 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            742     2   347888999999999999999999999999864

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.27  E-value=4.4e-06  Score=64.28  Aligned_cols=70  Identities=23%  Similarity=0.301  Sum_probs=62.5

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (557)
Q Consensus       406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (557)
                      .+.+++.++|+.|+..+++++.+.|.+...               +.++|.|+.++|+|.+|+.+++++++.+|++..+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~   66 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPEL---------------WLQRARCLFQLGRYEEALEDLERALELSPDDPDAR   66 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchh---------------hHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence            357899999999999999999998876655               88999999999999999999999999999998877


Q ss_pred             HHHHH
Q 008689          486 YRRAQ  490 (557)
Q Consensus       486 ~~~g~  490 (557)
                      .-+++
T Consensus        67 ~~~a~   71 (73)
T PF13371_consen   67 ALRAM   71 (73)
T ss_pred             HHHHh
Confidence            66554

>TIGR00115 tig trigger factor

Probab=98.26  E-value=2.9e-06  Score=88.72  Aligned_cols=84  Identities=17%  Similarity=0.291  Sum_probs=72.8

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (557)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i  245 (557)
                      .+..||.|+++|++.. +|+.++++  .++.|.+|.+.+++||+++|.||+.|+++.+.+|....|+..+.         
T Consensus       146 ~~~~gD~V~v~~~~~~-dg~~~~~~~~~~~~~~lg~~~~~~~~ee~L~G~k~Gd~~~~~v~~p~~~~~~~~---------  215 (408)
T TIGR00115       146 AAEKGDRVTIDFEGFI-DGEAFEGGKAENFSLELGSGQFIPGFEEQLVGMKAGEEKEIKVTFPEDYHAEEL---------  215 (408)
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEECCCCcchhHHHHhCCCCCCCeeEEEecCccccCcccC---------
Confidence            4678999999999977 78888765  78999999999999999999999999999999985557765433         


Q ss_pred             CCCCeEEEEEEeecccc
Q 008689          246 PPNATLQIALELVSWKT  262 (557)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (557)
                       ++.++.|.|+|.++..
T Consensus       216 -~gk~~~f~v~i~~I~~  231 (408)
T TIGR00115       216 -AGKEATFKVTVKEVKE  231 (408)
T ss_pred             -CCCeEEEEEEEEEecc
Confidence             4899999999999865

Trigger factor is a ribosome-associated molecular chaperone and is the first chaperone to interact with nascent polypeptide. Trigger factor can bind at the same time as the signal recognition particle (SRP), but is excluded by the SRP receptor (FtsY). The central domain of trigger factor has peptidyl-prolyl cis/trans isomerase activity. This protein is found in a single copy in virtually every bacterial genome.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=98.23  E-value=6.4e-05  Score=61.58  Aligned_cols=108  Identities=17%  Similarity=0.201  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL---  477 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~---  477 (557)
                      .....|...++.+.|.+|...|++|+++....+   .+|.-.-...-.-||.-|+.++.++++|++|+....++|.+   
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP---~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIP---AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS----TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCC---hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            344677888899999999999999999865432   33333445566778999999999999999999999999863   


Q ss_pred             ----CCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          478 ----DSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       478 ----~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                          +.+    ++.+.|+||.++..+|+.++|+..|+++-++
T Consensus        88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence                322    5789999999999999999999999998764

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.22  E-value=9.5e-06  Score=83.66  Aligned_cols=89  Identities=10%  Similarity=0.058  Sum_probs=77.7

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ..++.-|+..|.-.++|++|+.+++.||..+|++...|.|+|-.+..-.+.++|+..|++|++|.|+...++..|+...-
T Consensus       430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~m  509 (579)
T KOG1125|consen  430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCM  509 (579)
T ss_pred             hhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence            34566788899999999999999999999999999999999999999999999999999999999998777777776666


Q ss_pred             HHHHHHHHH
Q 008689          528 KMKEYNKKE  536 (557)
Q Consensus       528 ~~~~~~~~~  536 (557)
                      .+..+++.-
T Consensus       510 NlG~ykEA~  518 (579)
T KOG1125|consen  510 NLGAYKEAV  518 (579)
T ss_pred             hhhhHHHHH
Confidence            665555543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.21  E-value=5.8e-06  Score=84.11  Aligned_cols=73  Identities=21%  Similarity=0.237  Sum_probs=63.4

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (557)
                      ...+.+..+.+.|+.|++.|+|++|+..|++|+.+.|++...            ..+|+|+|.||.++|++++|+.++.+
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA------------~~A~yNLAcaya~LGr~dEAla~Lrr  137 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEA------------QAAYYNKACCHAYREEGKKAADCLRT  137 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHH------------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445568889999999999999999999999999998865421            12488999999999999999999999


Q ss_pred             HHccC
Q 008689          474 VLDLD  478 (557)
Q Consensus       474 al~~~  478 (557)
                      |+++.
T Consensus       138 ALels  142 (453)
T PLN03098        138 ALRDY  142 (453)
T ss_pred             HHHhc
Confidence            99974

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.21  E-value=2.3e-05  Score=66.31  Aligned_cols=98  Identities=18%  Similarity=0.005  Sum_probs=84.0

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .+.+.|..+-..|+.++|+..|.+|+......            ..+..++.++|.++..+|++++|+..+++++...|+
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~------------~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~   70 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSG------------ADRRRALIQLASTLRNLGRYDEALALLEEALEEFPD   70 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCc------------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            46788889999999999999999999853221            123446789999999999999999999999998787


Q ss_pred             ---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          481 ---NVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       481 ---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                         +.......+.++..+|++++|+..+-.++.
T Consensus        71 ~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la  103 (120)
T PF12688_consen   71 DELNAALRVFLALALYNLGRPKEALEWLLEALA  103 (120)
T ss_pred             ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence               778888899999999999999999988875

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=2.9e-06  Score=81.38  Aligned_cols=86  Identities=14%  Similarity=0.143  Sum_probs=75.9

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      .+++|+|.|++--++|+.++..+.+|+..-.   .-...||++|.+....|++..|..+|+-||..||++.++...|..+
T Consensus       359 eLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL  438 (478)
T KOG1129|consen  359 ELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVL  438 (478)
T ss_pred             HHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHH
Confidence            4589999999999999999999999988633   3477899999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHH
Q 008689          526 KEKMKEYNK  534 (557)
Q Consensus       526 ~~~~~~~~~  534 (557)
                      ..+......
T Consensus       439 ~~r~G~i~~  447 (478)
T KOG1129|consen  439 AARSGDILG  447 (478)
T ss_pred             HhhcCchHH
Confidence            766554443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.15  E-value=3.4e-05  Score=85.85  Aligned_cols=129  Identities=16%  Similarity=0.141  Sum_probs=84.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHH---------
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL---------  470 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~---------  470 (557)
                      ..+....+.+...+++++|+..+..+++..|....+               |+-+|..|+..+++..|...         
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~---------------yy~~G~l~~q~~~~~~~~lv~~l~~~~~~   96 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISA---------------LYISGILSLSRRPLNDSNLLNLIDSFSQN   96 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceeh---------------HHHHHHHHHhhcchhhhhhhhhhhhcccc
Confidence            445556667778999999999999999888766544               44444444444444433333         


Q ss_pred             ---------HHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          471 ---------CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYG  541 (557)
Q Consensus       471 ---------~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~  541 (557)
                               |...+. .+.+-.|+|.+|.||-++|++++|.+.|+++++++|+|..+.+.++-..... . -++-..+++
T Consensus        97 ~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-d-L~KA~~m~~  173 (906)
T PRK14720         97 LKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-D-KEKAITYLK  173 (906)
T ss_pred             cchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-h-HHHHHHHHH
Confidence                     222222 3444478888888888888888888888888888888888877777665555 2 223333555


Q ss_pred             HHhhh
Q 008689          542 NMFAK  546 (557)
Q Consensus       542 ~mf~~  546 (557)
                      +.+..
T Consensus       174 KAV~~  178 (906)
T PRK14720        174 KAIYR  178 (906)
T ss_pred             HHHHH
Confidence            54443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=98.14  E-value=3.7e-06  Score=54.08  Aligned_cols=34  Identities=41%  Similarity=0.614  Sum_probs=26.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      +++|+++|.+|..++++++|+.+|++|++++|+|
T Consensus         1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            3678888888888888888888888888888864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.13  E-value=2.7e-05  Score=79.11  Aligned_cols=112  Identities=19%  Similarity=0.145  Sum_probs=95.2

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (557)
                      --.+..+++.+++.+|++.+++|+.+.|....               +..|+|.++++.|++.+|+...+..+.-+|+++
T Consensus       344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~---------------l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp  408 (484)
T COG4783         344 ELAGDILLEANKAKEAIERLKKALALDPNSPL---------------LQLNLAQALLKGGKPQEAIRILNRYLFNDPEDP  408 (484)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCccH---------------HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCc
Confidence            35678899999999999999999999987643               367999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ..|..+|++|..+|+-.+|...+...+.+.-+-..+...+.+.+++.
T Consensus       409 ~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~  455 (484)
T COG4783         409 NGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV  455 (484)
T ss_pred             hHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            99999999999999888888888888887766555555555554444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.12  E-value=6e-05  Score=77.36  Aligned_cols=135  Identities=10%  Similarity=-0.017  Sum_probs=99.9

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------Ch--HHHHHHH-------HHHHHHHhhHHHHH
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GD--EEKKQAK-------ALKVACNLNNAACK  458 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~--~~~~~~~-------~~~~~~~~nla~~~  458 (557)
                      ...-+|..++..+++++|+..+.++++..|.+...             ..  ....+..       ......+.++|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            34467889999999999999999999887654311             00  0000100       11233456788999


Q ss_pred             HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHHHHH
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV----KLEYKTLKEKMKEYNK  534 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~----~~~l~~l~~~~~~~~~  534 (557)
                      ..+|++++|+..++++++++|++..++..+|.+|..+|++++|+..+++++.+.|.+...    .-.+..+...+.+.++
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~  204 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEA  204 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999999999999999999999999999999999999998854322    2234555444444443


Q ss_pred             H
Q 008689          535 K  535 (557)
Q Consensus       535 ~  535 (557)
                      .
T Consensus       205 A  205 (355)
T cd05804         205 A  205 (355)
T ss_pred             H
Confidence            3

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=98.12  E-value=8.7e-06  Score=87.04  Aligned_cols=129  Identities=31%  Similarity=0.448  Sum_probs=110.1

Q ss_pred             CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--hCHHHH
Q 008689          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQA  467 (557)
Q Consensus       390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A  467 (557)
                      .+.+..+.++..++++||.+|++++|..|.-.|..++.++|.+...           ...+..|.+.||+.+  ++|..+
T Consensus        44 ~di~v~l~ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~-----------~a~~~~~~~s~~m~~~l~~~~~~  112 (748)
T KOG4151|consen   44 EDIEVFLSRALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHV-----------VATLRSNQASCYMQLGLGEYPKA  112 (748)
T ss_pred             cchHHHHHHHHHHHhhhhHHhhhhhhhccchhhhhhheeccccchh-----------hhhHHHHHHHHHhhcCccchhhh
Confidence            3566778899999999999999999999999999999999855432           456688999888775  599999


Q ss_pred             HHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       468 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +..|+-|+...|...+++++|+.+|..++.++-|.+++.-....+|++.++...+.+++..+
T Consensus       113 ~~E~~la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  113 IPECELALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             cCchhhhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999966555444444333

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.11  E-value=4.9e-06  Score=66.10  Aligned_cols=76  Identities=30%  Similarity=0.410  Sum_probs=66.5

Q ss_pred             hhCHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689          461 LKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (557)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~  537 (557)
                      +++|+.|+..++++++.+|.  +...++++|.||..+|+|++|+..+++ ++++|.+..+...+++|.-.+.+.++...
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            58899999999999999995  567888999999999999999999999 89999998888888999888888777654

>PRK01490 tig trigger factor; Provisional

Probab=98.10  E-value=1.5e-05  Score=84.03  Aligned_cols=84  Identities=15%  Similarity=0.283  Sum_probs=71.5

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (557)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i  245 (557)
                      .+..||.|+++|.+.. +|+.+++.  .++.|.+|.+.+++||+++|.||+.|+++.+.++....|+....         
T Consensus       157 ~~~~gD~V~vd~~~~~-~g~~~~~~~~~~~~~~lg~~~~~~~fee~L~G~k~Ge~~~~~~~~p~~~~~~~l---------  226 (435)
T PRK01490        157 PAENGDRVTIDFVGSI-DGEEFEGGKAEDFSLELGSGRFIPGFEEQLVGMKAGEEKTIDVTFPEDYHAEDL---------  226 (435)
T ss_pred             cCCCCCEEEEEEEEEE-CCEECcCCCCCceEEEEcCCCcchhHHHHhCCCCCCCeeEEEecCccccccccC---------
Confidence            4689999999999998 77777755  88999999999999999999999999999999874446755433         


Q ss_pred             CCCCeEEEEEEeecccc
Q 008689          246 PPNATLQIALELVSWKT  262 (557)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (557)
                       ++.++.|.|+|.++..
T Consensus       227 -agk~~~f~v~v~~V~~  242 (435)
T PRK01490        227 -AGKEATFKVTVKEVKE  242 (435)
T ss_pred             -CCCeEEEEEEEEEecc
Confidence             4789999999999865

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.10  E-value=7.4e-05  Score=72.01  Aligned_cols=146  Identities=18%  Similarity=0.147  Sum_probs=111.1

Q ss_pred             cCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-------CC--hHHHH---------------HH
Q 008689          388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------FG--DEEKK---------------QA  443 (557)
Q Consensus       388 ~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~-------~~--~~~~~---------------~~  443 (557)
                      .+++.+++   ...+.+.|..|+..|-|++|...|...++.-.....       +.  ..+|+               ..
T Consensus        99 pdlT~~qr---~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~  175 (389)
T COG2956          99 PDLTFEQR---LLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY  175 (389)
T ss_pred             CCCchHHH---HHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc
Confidence            34455544   556778889999999999999998876652211000       00  00111               11


Q ss_pred             HHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHH
Q 008689          444 KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEY  522 (557)
Q Consensus       444 ~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l  522 (557)
                      +-..+..|+.+|..++...+++.|+....+|+..||+++.|-.-+|.+++..|+|+.|++.++.+++.||+-. ++...|
T Consensus       176 ~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L  255 (389)
T COG2956         176 RVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEML  255 (389)
T ss_pred             hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHH
Confidence            2245677999999999999999999999999999999999999999999999999999999999999999874 677777


Q ss_pred             HHHHHHHHHHHHHH
Q 008689          523 KTLKEKMKEYNKKE  536 (557)
Q Consensus       523 ~~l~~~~~~~~~~~  536 (557)
                      ..|...+.+..+-.
T Consensus       256 ~~~Y~~lg~~~~~~  269 (389)
T COG2956         256 YECYAQLGKPAEGL  269 (389)
T ss_pred             HHHHHHhCCHHHHH
Confidence            77877776665544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.10  E-value=4.1e-05  Score=81.81  Aligned_cols=118  Identities=17%  Similarity=0.051  Sum_probs=90.2

Q ss_pred             HhhhHHHHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCC--------------C---hHHHHHHHHH------------
Q 008689          399 AGKKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------G---DEEKKQAKAL------------  446 (557)
Q Consensus       399 a~~~k~~G~~~~~~~---~y~~A~~~y~~Al~~~~~~~~~--------------~---~~~~~~~~~~------------  446 (557)
                      |-.+.-+|..++.+.   ++.+|+.+|++|+++.|.....              .   ......+...            
T Consensus       339 Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~  418 (517)
T PRK10153        339 ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNV  418 (517)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcC
Confidence            455556666666544   4889999999999987764211              1   1111111111            


Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      ...+|.-+|..++..+++++|..++++|+.++| ++.+|+.+|+++...|++++|++.|++|+.++|.++.
T Consensus       419 ~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        419 LPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            114566788888899999999999999999999 5789999999999999999999999999999999763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00014  Score=67.87  Aligned_cols=123  Identities=21%  Similarity=0.175  Sum_probs=93.6

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHHHH------HHHHHhhHHHHHHhhhC
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAKAL------KVACNLNNAACKLKLKD  463 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~~~~~------~~~~~~nla~~~~k~~~  463 (557)
                      +-.|..+-..++|+.|+..|...+.-.|.+...             +-+-.+++..+      -..++..+|..|+.+++
T Consensus        90 ~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen   90 KLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhH
Confidence            445666777889999999999988776654322             11222222222      23457789999999999


Q ss_pred             HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC---CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA---DLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg---~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      |++|+-++++++-+.|.|+-.+-|+|..++-+|   +++-|+++|.+|++++|.|......+-.|
T Consensus       170 f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc  234 (289)
T KOG3060|consen  170 FEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC  234 (289)
T ss_pred             HHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence            999999999999999999999999999998877   57789999999999999775444433333

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.08  E-value=1.2e-05  Score=79.62  Aligned_cols=131  Identities=21%  Similarity=0.187  Sum_probs=96.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .+......+++.+++.++...+.++........             ...++..+|.++.+.|++++|+..++++|+++|+
T Consensus       112 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-------------~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~  178 (280)
T PF13429_consen  112 YLLSALQLYYRLGDYDEAEELLEKLEELPAAPD-------------SARFWLALAEIYEQLGDPDKALRDYRKALELDPD  178 (280)
T ss_dssp             ------H-HHHTT-HHHHHHHHHHHHH-T---T--------------HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT
T ss_pred             hhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCC-------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence            344455667888999999999988775332111             1234778999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      |..++..++.++..+|++++|++.++...+..|+|+.+...+..+...+.+.++.-. .|.+...
T Consensus       179 ~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~-~~~~~~~  242 (280)
T PF13429_consen  179 DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALE-YLEKALK  242 (280)
T ss_dssp             -HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHH-HHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccc-ccccccc
Confidence            999999999999999999999999999998888888888888888888876665543 5555444

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.07  E-value=3.9e-05  Score=86.16  Aligned_cols=113  Identities=8%  Similarity=-0.020  Sum_probs=91.3

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (557)
Q Consensus       406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (557)
                      |..+...|+|++|+..|+++++..|.+...               +.-++..|...+++++|+..+.+++..+|.+... 
T Consensus       109 A~ly~~~gdyd~Aiely~kaL~~dP~n~~~---------------l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-  172 (822)
T PRK14574        109 ARAYRNEKRWDQALALWQSSLKKDPTNPDL---------------ISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-  172 (822)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCCCCHHH---------------HHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-
Confidence            557777899999999999999998876432               4567899999999999999999999999986544 


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       486 ~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      .-++..+..++++.+|++.|+++++++|++.++..++-.+..+......
T Consensus       173 l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~  221 (822)
T PRK14574        173 MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEP  221 (822)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHH
Confidence            4445555557788779999999999999999888777766655544433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=98.06  E-value=0.00016  Score=64.02  Aligned_cols=111  Identities=18%  Similarity=0.133  Sum_probs=89.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (557)
                      ..+...|......++...++..|.+|+.+.....       .+..............+...++..+...++|+.|+..|.
T Consensus         7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~   86 (146)
T PF03704_consen    7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ   86 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            3445567777788899999999999999764321       223345667788888899999999999999999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       473 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      +++..+|.+..++..+-.+|..+|+..+|++.|+++..
T Consensus        87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.05  E-value=0.00022  Score=63.05  Aligned_cols=135  Identities=19%  Similarity=0.129  Sum_probs=97.9

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (557)
                      .+.+.+..........+..+++..+...+.+.+.-.+...            +.....+.+|.+++..|+|++|+..++.
T Consensus         6 ~~~~~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~------------ya~~A~l~lA~~~~~~g~~~~A~~~l~~   73 (145)
T PF09976_consen    6 QQAEQASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSP------------YAALAALQLAKAAYEQGDYDEAKAALEK   73 (145)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh------------HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3455677777788888888999988887877776554332            2344577899999999999999999999


Q ss_pred             HHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          474 VLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGN  542 (557)
Q Consensus       474 al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~  542 (557)
                      ++...|+.   ..+.+|+|.+++.+|+|++|+..++.. .-.+-...+...+..+..+..+..+.. ..|++
T Consensus        74 ~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~-~~y~~  143 (145)
T PF09976_consen   74 ALANAPDPELKPLARLRLARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEAR-AAYQK  143 (145)
T ss_pred             HHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHH-HHHHH
Confidence            99987654   568999999999999999999999662 222223345555666655555544443 24443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.05  E-value=8.7e-05  Score=80.30  Aligned_cols=132  Identities=17%  Similarity=0.169  Sum_probs=93.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      .-++..+...-+.+++.+|.-+|.+|+.+.|.+...               +.+++..|.++|++..|...+.+++.++|
T Consensus       208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~---------------~~ers~L~~~~G~~~~Am~~f~~l~~~~p  272 (895)
T KOG2076|consen  208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWEL---------------IYERSSLYQKTGDLKRAMETFLQLLQLDP  272 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHH---------------HHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence            445666777777888888888888888888765433               77999999999999999999999999999


Q ss_pred             C----ChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          480 R----NVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       480 ~----~~ka~~~-~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      .    ...++-+ .++.+...++-+.|++.++.+++.. .+.....-+. +...+--..++-.+.-..+.....
T Consensus       273 ~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~-~~~~~~ed~n-i~ael~l~~~q~d~~~~~i~~~~~  344 (895)
T KOG2076|consen  273 PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE-KDEASLEDLN-ILAELFLKNKQSDKALMKIVDDRN  344 (895)
T ss_pred             chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc-cccccccHHH-HHHHHHHHhHHHHHhhHHHHHHhc
Confidence            3    3444444 4999999999999999999999833 2222223333 333333333333334455555444

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.02  E-value=0.00017  Score=75.24  Aligned_cols=126  Identities=17%  Similarity=0.165  Sum_probs=87.4

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (557)
                      -+.+.+.....+|...+..|+|++|.+...++.+..+. +.              ..|...|....++|+++.|..++.+
T Consensus        79 rr~~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~--------------l~~llaA~aA~~~g~~~~A~~~l~~  143 (398)
T PRK10747         79 RKRRRARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PV--------------VNYLLAAEAAQQRGDEARANQHLER  143 (398)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hH--------------HHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            35567788889999999999999999776665543211 00              0133334455788888888888888


Q ss_pred             HHccCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          474 VLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       474 al~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      +.+.+|++. -.....+..+...|++++|++.++++.+.+|+|..+...+..+..+..+..+
T Consensus       144 A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        144 AAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHH
Confidence            888777774 3334557888888888888888888888888887777777666655544443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.01  E-value=1.7e-05  Score=76.27  Aligned_cols=100  Identities=18%  Similarity=0.126  Sum_probs=85.6

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (557)
                      .+.|..|++.|.+.+|...++.++...+.-                ..+.-|+.+|.+..+...|+..+.+.|..-|.++
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~----------------dTfllLskvY~ridQP~~AL~~~~~gld~fP~~V  290 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP----------------DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDV  290 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCch----------------hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchh
Confidence            367999999999999999999999866532                2256788899999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~  518 (557)
                      ..+.-.|++|..++++++|.+.|+.+++++|.|.++
T Consensus       291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEa  326 (478)
T KOG1129|consen  291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEA  326 (478)
T ss_pred             hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCcccee
Confidence            989999999999999999999999999999887543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.00  E-value=6.4e-05  Score=73.14  Aligned_cols=98  Identities=13%  Similarity=0.103  Sum_probs=75.8

Q ss_pred             HHHhhHHHHH-HhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008689          449 ACNLNNAACK-LKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE  521 (557)
Q Consensus       449 ~~~~nla~~~-~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~  521 (557)
                      ...++.|..+ ++.++|++|+..|+..+...|++   ..|+|++|.+|+.+|+|++|+..|+++++..|++.   ++...
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3356788876 67799999999999999999998   57999999999999999999999999999999864   45555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          522 YKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      +..+...+....+. .+.|+++....
T Consensus       223 lg~~~~~~g~~~~A-~~~~~~vi~~y  247 (263)
T PRK10803        223 VGVIMQDKGDTAKA-KAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHcCCHHHH-HHHHHHHHHHC
Confidence            55555544433333 34565555443

>TIGR00540 hemY_coli hemY protein

Probab=98.00  E-value=7.9e-05  Score=78.12  Aligned_cols=138  Identities=14%  Similarity=0.052  Sum_probs=107.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      +........+..+...|++++|.....++++..+++....           .  ..-+....+..++...++..++++++
T Consensus       261 ~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~-----------~--~~l~~~~~l~~~~~~~~~~~~e~~lk  327 (409)
T TIGR00540       261 HNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAIS-----------L--PLCLPIPRLKPEDNEKLEKLIEKQAK  327 (409)
T ss_pred             CCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccch-----------h--HHHHHhhhcCCCChHHHHHHHHHHHH
Confidence            3455566788899999999999999999999877654320           0  01123334556888999999999999


Q ss_pred             cCCCCh--HHHHHHHHHHHhcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689          477 LDSRNV--KALYRRAQAYIQMADLDLAEFDIK--KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT  549 (557)
Q Consensus       477 ~~p~~~--ka~~~~g~a~~~lg~~~~A~~~~~--~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~  549 (557)
                      .+|+++  ..+..+|..+..+|+|++|++.|+  ++++.+|++... ..+..+..++.+.++.. +.|++.+.-+..
T Consensus       328 ~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~-~~La~ll~~~g~~~~A~-~~~~~~l~~~~~  402 (409)
T TIGR00540       328 NVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDL-AMAADAFDQAGDKAEAA-AMRQDSLGLMLA  402 (409)
T ss_pred             hCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHH-HHHHHHHHHcCCHHHHH-HHHHHHHHHHhc
Confidence            999999  888899999999999999999999  688889988664 48888878777766554 578776665543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR00540 hemY_coli hemY protein

Probab=97.99  E-value=0.00015  Score=75.91  Aligned_cols=121  Identities=18%  Similarity=0.178  Sum_probs=68.7

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      +.+.+.....+|-..+..|+|..|.+...++.+..+....               .+.-.|.++..+|+++.|..++.++
T Consensus        80 ~~~k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~---------------~~llaA~aa~~~g~~~~A~~~l~~a  144 (409)
T TIGR00540        80 KRRKAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL---------------NLIKAAEAAQQRGDEARANQHLEEA  144 (409)
T ss_pred             HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH---------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            5557888889999999999999999999998886543211               1223344444455555555555555


Q ss_pred             HccCCCCh-HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          475 LDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       475 l~~~p~~~-ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      .+..|++. .+...++..++..|+++.|++.+++.++..|+++.+...+..+.....
T Consensus       145 ~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~  201 (409)
T TIGR00540       145 AELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSG  201 (409)
T ss_pred             HHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHh
Confidence            54444442 222223555555555555555555555555555544444444443333

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.99  E-value=1.4e-05  Score=51.18  Aligned_cols=34  Identities=41%  Similarity=0.560  Sum_probs=28.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      +++++.+|.+|..+|+|++|+++|+++++++|+|
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            4678888888888888888888888888888875

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.97  E-value=7.4e-06  Score=52.53  Aligned_cols=34  Identities=24%  Similarity=0.322  Sum_probs=31.8

Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHH
Q 008689          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF  503 (557)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~  503 (557)
                      .|++||+++|+|+.+|+++|.+|..+|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            3789999999999999999999999999999973

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.97  E-value=8.4e-05  Score=73.82  Aligned_cols=112  Identities=13%  Similarity=0.178  Sum_probs=91.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---ChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      .......|..+|++++|..|+-.|+.||+++......   .......+..+..-+...|..||+++++.+.|+.+.-+.|
T Consensus       176 l~vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI  255 (569)
T PF15015_consen  176 LQVALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSI  255 (569)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhh
Confidence            3344567889999999999999999999998754322   1122334445555557789999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      .++|.+..-+.|+|.|+..|.+|.+|-..+-.|.-
T Consensus       256 ~lnP~~frnHLrqAavfR~LeRy~eAarSamia~y  290 (569)
T PF15015_consen  256 NLNPSYFRNHLRQAAVFRRLERYSEAARSAMIADY  290 (569)
T ss_pred             hcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999887766653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=97.96  E-value=5.6e-05  Score=77.60  Aligned_cols=99  Identities=15%  Similarity=0.030  Sum_probs=85.8

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+...|++.+|...|++++...|.+..               ++.++|.+|...|++++|+.++.+++...|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~---------------~~~~la~i~~~~g~~~eA~~~l~~~l~~~~  179 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW---------------AVHAVAHVLEMQGRFKEGIAFMESWRDTWD  179 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH---------------HHHHHHHHHHHcCCHHHHHHHHHhhhhccC
Confidence            44456788899999999999999999998876542               377899999999999999999999999876


Q ss_pred             CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689          480 RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (557)
Q Consensus       480 ~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p  513 (557)
                      .+    ...++.+|.++..+|++++|+..|++++...|
T Consensus       180 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         180 CSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             CCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcccc
Confidence            43    24567899999999999999999999987777

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.96  E-value=6.6e-05  Score=78.45  Aligned_cols=118  Identities=15%  Similarity=0.075  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .++.+...+|..++|...++..+..+.-.+.....               +.-.|.....+|+-++|...+..+++.|+.
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHges---------------lAmkGL~L~~lg~~~ea~~~vr~glr~d~~   73 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGES---------------LAMKGLTLNCLGKKEEAYELVRLGLRNDLK   73 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchh---------------HHhccchhhcccchHHHHHHHHHHhccCcc
Confidence            46677788899999999998888888755544322               234566777899999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                      +.-+|.-.|..+..-.+|++|+++|..|++++|+|..+..-+..++..++...
T Consensus        74 S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~  126 (700)
T KOG1156|consen   74 SHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYE  126 (700)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999988888877776544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.94  E-value=5.7e-05  Score=53.52  Aligned_cols=49  Identities=24%  Similarity=0.377  Sum_probs=41.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      ..+|.+|.++.++|+|++|+..++.+|+++|+|..+......+..++++
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            3689999999999999999999999999999999888888877776643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.93  E-value=0.00067  Score=64.10  Aligned_cols=126  Identities=20%  Similarity=0.204  Sum_probs=101.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+.+.|...++.|+|.+|++.|+.....-|.++-.            -.+...++.+++|.++|+.|+.+.++=+.+.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~------------~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly  101 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS------------EQAQLDLAYAYYKNGEYDLALAYIDRFIRLY  101 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc------------HHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence            5678899999999999999999999888766654422            2335678999999999999999999999999


Q ss_pred             CCC---hHHHHHHHHHHHhcCC--------HHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHH
Q 008689          479 SRN---VKALYRRAQAYIQMAD--------LDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       479 p~~---~ka~~~~g~a~~~lg~--------~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~~~  536 (557)
                      |++   .-++|-+|.++...=+        -.+|+..|+..+.--|+..   ++...+..++.++...+-.-
T Consensus       102 P~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~I  173 (254)
T COG4105         102 PTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAI  173 (254)
T ss_pred             CCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHH
Confidence            887   5688899999776533        2588999999999999975   67777777777776665443

>COG0544 Tig FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones]

Probab=97.91  E-value=2.1e-05  Score=81.70  Aligned_cols=81  Identities=17%  Similarity=0.331  Sum_probs=67.6

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEe--cCCCccCCCCCCCCCCCCC
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV--KPQYGFGEKGKSASGNEGA  244 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v--p~~~~~g~~g~~~~~~~~~  244 (557)
                      +..||.|+++|.+.. ||..|...  +.+.+.+|+|+++|||+.+|.||+.|+...|.|  |.+  |.....        
T Consensus       158 a~~gD~v~IDf~g~i-Dg~~fegg~ae~~~l~lGs~~fipgFe~~LvG~k~Ge~k~i~vtFP~d--y~a~~L--------  226 (441)
T COG0544         158 AENGDRVTIDFEGSV-DGEEFEGGKAENFSLELGSGRFIPGFEDQLVGMKAGEEKDIKVTFPED--YHAEEL--------  226 (441)
T ss_pred             cccCCEEEEEEEEEE-cCeeccCccccCeEEEEcCCCchhhHHhhhccCcCCCeeEEEEEcccc--cchhHh--------
Confidence            889999999999966 77777765  889999999999999999999999999999766  444  443333        


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008689          245 VPPNATLQIALELVSWKT  262 (557)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (557)
                        .|.+..|.|.|..+..
T Consensus       227 --aGK~a~F~V~vkeVk~  242 (441)
T COG0544         227 --AGKEATFKVKVKEVKK  242 (441)
T ss_pred             --CCCceEEEEEEEEEee
Confidence              3678899999999865

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.90  E-value=0.00023  Score=64.05  Aligned_cols=91  Identities=22%  Similarity=0.261  Sum_probs=70.4

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHccCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          454 NAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      -+.-+++.|+|++|...|..||.+.|..     .-.|.+||.|+++|+.++.|++++.+|++|+|.+.-+...-+.+..+
T Consensus       101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            4667789999999999999999999875     34678999999999999999999999999999985444444445555


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 008689          529 MKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       529 ~~~~~~~~~~~~~~mf~  545 (557)
                      +.+.+..- .-|+++..
T Consensus       181 ~ek~eeal-eDyKki~E  196 (271)
T KOG4234|consen  181 MEKYEEAL-EDYKKILE  196 (271)
T ss_pred             hhhHHHHH-HHHHHHHH
Confidence            54444433 35555554

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.90  E-value=3.1e-05  Score=53.03  Aligned_cols=42  Identities=29%  Similarity=0.372  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~  524 (557)
                      .+++.+|.+|..+|++++|++.|+++++.+|+|..++..+.+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467777888888888888888888888888888777766654

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.89  E-value=5e-05  Score=77.77  Aligned_cols=96  Identities=19%  Similarity=0.238  Sum_probs=73.0

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      .+..++..++..+|++...+++...+.+.               .++.-.|..+++.++|+.|+..++++..+.|++.++
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~---------------~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~  270 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDS---------------ELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFET  270 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHH
Confidence            45555566677777777777776554332               235567888888999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      |+.+|++|..+|+|++|+..++.+-.+.+.+
T Consensus       271 W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~  301 (395)
T PF09295_consen  271 WYQLAECYIQLGDFENALLALNSCPMLTYKD  301 (395)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHhcCcCCCCcc
Confidence            9999999999999999998887666554443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.89  E-value=0.00041  Score=64.03  Aligned_cols=145  Identities=21%  Similarity=0.273  Sum_probs=104.4

Q ss_pred             hhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          400 GKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       400 ~~~k~~G~~~~~~-~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ..+.+.|..|=.. .++++|+.+|.+|.++....         +......+|++..|..-..+++|.+|+..|+++....
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e---------es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s  184 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE---------ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSS  184 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch---------hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344555554443 67899999999999887643         3335567788888888888999999999999997755


Q ss_pred             CCC------hHH-HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCC
Q 008689          479 SRN------VKA-LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGS  551 (557)
Q Consensus       479 p~~------~ka-~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~~  551 (557)
                      -+|      +|- +++.|.||+...+.-.|...+++...++|...+- ++...++..+...++.+-..|....+.+.+.+
T Consensus       185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~ds-REckflk~L~~aieE~d~e~fte~vkefDsis  263 (288)
T KOG1586|consen  185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDS-RECKFLKDLLDAIEEQDIEKFTEVVKEFDSIS  263 (288)
T ss_pred             ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCccccc-HHHHHHHHHHHHHhhhhHHHHHHHHHhhhccc
Confidence            444      444 4567899999899999999999999999987643 34444555566666666666666666666655


Q ss_pred             CCC
Q 008689          552 DLD  554 (557)
Q Consensus       552 ~~d  554 (557)
                      .+|
T Consensus       264 rLD  266 (288)
T KOG1586|consen  264 RLD  266 (288)
T ss_pred             hHH
Confidence            554

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.87  E-value=0.00025  Score=60.08  Aligned_cols=85  Identities=19%  Similarity=0.101  Sum_probs=71.1

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYK  523 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~---n~~~~~~l~  523 (557)
                      +.+++|.++-.+|+.++|+..|++++......   ..++..+|.+|..+|++++|+..|++++.-.|+   +..+...+.
T Consensus         3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~A   82 (120)
T PF12688_consen    3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLA   82 (120)
T ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHH
Confidence            47799999999999999999999999975433   779999999999999999999999999999898   666666666


Q ss_pred             HHHHHHHHHHH
Q 008689          524 TLKEKMKEYNK  534 (557)
Q Consensus       524 ~l~~~~~~~~~  534 (557)
                      .+...+.+.++
T Consensus        83 l~L~~~gr~~e   93 (120)
T PF12688_consen   83 LALYNLGRPKE   93 (120)
T ss_pred             HHHHHCCCHHH
Confidence            55555444444

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.85  E-value=4.4e-05  Score=73.90  Aligned_cols=63  Identities=21%  Similarity=0.230  Sum_probs=59.6

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      ..|.-|+|+|.|++||.+|.+++..+|.|+-.+.+||.||+++..|..|..++..|+.|+-.-
T Consensus       102 E~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y  164 (536)
T KOG4648|consen  102 ERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLY  164 (536)
T ss_pred             HhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence            578899999999999999999999999999999999999999999999999999999997543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=7.4e-06  Score=75.65  Aligned_cols=81  Identities=27%  Similarity=0.495  Sum_probs=71.0

Q ss_pred             ecCCCeEEEEEEcccCcCCC--CCCCEEEEEEEEEEc--CCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689           34 IGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (557)
Q Consensus        34 ~~~~g~~~~~~~~G~G~~~~--~~gd~V~v~y~~~~~--dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~  109 (557)
                      +.-.|+.++|+..|.| +-|  ..|..|.+||.....  .++++|+|+..++|+.+++|.---++-||..|..|+++|.+
T Consensus         7 l~~~gv~Kril~~G~g-~l~e~~dGTrv~FHfrtl~~~e~~tviDDsRk~gkPmeiiiGkkFkL~VwE~il~tM~v~Eva   85 (329)
T KOG0545|consen    7 LNVEGVKKRILHGGTG-ELPEFIDGTRVIFHFRTLKCDEERTVIDDSRKVGKPMEIIIGKKFKLEVWEIILTTMRVHEVA   85 (329)
T ss_pred             ccchhhhHhhccCCCc-cCccccCCceEEEEEEecccCcccccccchhhcCCCeEEeeccccccHHHHHHHHHHhhhhHH
Confidence            3557899999999999 555  489999999998765  45799999999999999999988999999999999999999


Q ss_pred             EEEecC
Q 008689          110 VFTIPP  115 (557)
Q Consensus       110 ~v~ip~  115 (557)
                      .|.+.-
T Consensus        86 qF~~d~   91 (329)
T KOG0545|consen   86 QFWCDT   91 (329)
T ss_pred             Hhhhhh
Confidence            887654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=97.82  E-value=0.00028  Score=68.16  Aligned_cols=137  Identities=15%  Similarity=0.114  Sum_probs=98.5

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC--------------------CChH----HHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS--------------------FGDE----EKKQAKALKVACN  451 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~--------------------~~~~----~~~~~~~~~~~~~  451 (557)
                      .+..+.+...||.+-++|..++|++.-...++- |+...                    ...|    ...+.......+.
T Consensus        66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Al  144 (389)
T COG2956          66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGAL  144 (389)
T ss_pred             chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHH
Confidence            345667778899999999999999876554432 11100                    0001    1111223445556


Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHccCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      -.|...|.+.++|++||+.+.+...+.+..     +..|..+|+.++.-.+++.|+..+++|++.+|++..+...+.++.
T Consensus       145 qqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~  224 (389)
T COG2956         145 QQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVE  224 (389)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHH
Confidence            678889999999999999999999988765     456778899999999999999999999999999977777777765


Q ss_pred             HHHHHHH
Q 008689          527 EKMKEYN  533 (557)
Q Consensus       527 ~~~~~~~  533 (557)
                      .......
T Consensus       225 ~~~g~y~  231 (389)
T COG2956         225 LAKGDYQ  231 (389)
T ss_pred             HhccchH
Confidence            5544443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00044  Score=68.82  Aligned_cols=137  Identities=17%  Similarity=0.141  Sum_probs=103.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHH---------HHHHHHHHHHH----------HhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE---------KKQAKALKVAC----------NLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~---------~~~~~~~~~~~----------~~nla~~~~  459 (557)
                      ..-+-+.|..+|..|++.+|+..|.++..+.++....-++.         .+....+...+          +.--+...+
T Consensus       232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~  311 (564)
T KOG1174|consen  232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLY  311 (564)
T ss_pred             HHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhh
Confidence            44566789999999999999999999998877643221110         11111111111          111233455


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      ..++|..|+.+..++|..+|.+..+|.-+|.++..+++.++|+-.|+.|+.|.|..-++..-|-.+.-...+.++.
T Consensus       312 ~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA  387 (564)
T KOG1174|consen  312 DEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEA  387 (564)
T ss_pred             hhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHH
Confidence            6789999999999999999999999999999999999999999999999999999988888877776555555543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.81  E-value=2.4e-05  Score=50.16  Aligned_cols=33  Identities=27%  Similarity=0.432  Sum_probs=29.8

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      .+|+++|.+|+.+++|++|+.+|++||+++|+|
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            468999999999999999999999999999974

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.80  E-value=0.0002  Score=71.00  Aligned_cols=139  Identities=22%  Similarity=0.207  Sum_probs=90.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|+.|-..++|.+|..+|.+|.++.......         .....+|.+.+.||.+. ++++|+.++++|+
T Consensus        32 e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~---------~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~  101 (282)
T PF14938_consen   32 EEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK---------FEAAKAYEEAANCYKKG-DPDEAIECYEKAI  101 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H---------HHHHHHHHHHHHHHHHT-THHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH
Confidence            3456677777787777999999999999999887643221         22445577777777666 8999999999987


Q ss_pred             ccC--CC----ChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCC--C-H---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLD--SR----NVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPD--N-R---DVKLEYKTLKEKMKEYNKKEAKFYGN  542 (557)
Q Consensus       476 ~~~--p~----~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~p~--n-~---~~~~~l~~l~~~~~~~~~~~~~~~~~  542 (557)
                      .+-  ..    -.+++.++|.+|... +++++|++.|++|+.+...  . .   .+...+..+..++.+..+.- ..|.+
T Consensus       102 ~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~-~~~e~  180 (282)
T PF14938_consen  102 EIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAI-EIYEE  180 (282)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHH-HHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHH-HHHHH
Confidence            752  12    167888889999888 8999999999999887321  1 1   23334444555555554443 34555


Q ss_pred             Hhh
Q 008689          543 MFA  545 (557)
Q Consensus       543 mf~  545 (557)
                      +..
T Consensus       181 ~~~  183 (282)
T PF14938_consen  181 VAK  183 (282)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.80  E-value=0.00024  Score=70.64  Aligned_cols=34  Identities=15%  Similarity=0.132  Sum_probs=28.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ....+.-.|+.+.+.++.++|+-.|+.|..+-|.
T Consensus       333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~  366 (564)
T KOG1174|consen  333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPY  366 (564)
T ss_pred             cchHHHhccHHHHhccchHHHHHHHHHHHhcchh
Confidence            3566778899999999999999999999987654

>PRK11906 transcriptional regulator; Provisional

Probab=97.78  E-value=0.0002  Score=73.19  Aligned_cols=100  Identities=16%  Similarity=0.100  Sum_probs=78.1

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh---------hCHHHHHHHHHHHHccCCCChHH
Q 008689          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL---------KDYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~---------~~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      ...+|+.+|.+|+...+.++.            ...+|.-+|.||+.+         ..-.+|++...+|++++|.++.|
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~------------~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a  340 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTL------------KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKI  340 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcc------------cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHH
Confidence            467888899999933222222            233466777777664         24567889999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ++.+|.++...++++.|+..|++|+.++|+...+......+
T Consensus       341 ~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~  381 (458)
T PRK11906        341 LAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALV  381 (458)
T ss_pred             HHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHH
Confidence            99999999999999999999999999999998877776654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.76  E-value=0.00046  Score=72.01  Aligned_cols=128  Identities=14%  Similarity=0.140  Sum_probs=100.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      ........+..+...|++++|.....++++. +.+.                 ..-+...++..+++++++..+++.++.
T Consensus       262 ~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~-~~~~-----------------~l~~l~~~l~~~~~~~al~~~e~~lk~  323 (398)
T PRK10747        262 QVALQVAMAEHLIECDDHDTAQQIILDGLKR-QYDE-----------------RLVLLIPRLKTNNPEQLEKVLRQQIKQ  323 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCCH-----------------HHHHHHhhccCCChHHHHHHHHHHHhh
Confidence            4445566788999999999999999999873 2211                 011223334559999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +|+++..++-+|++++..++|++|++.|+++++++|++.. ...+..+..++.+.++.. ..|++-+.
T Consensus       324 ~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~-~~~~~~l~  389 (398)
T PRK10747        324 HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAA-AMRRDGLM  389 (398)
T ss_pred             CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHH-HHHHHHHh
Confidence            9999999999999999999999999999999999999864 347787877776666553 46666554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=0.00017  Score=74.42  Aligned_cols=130  Identities=20%  Similarity=0.125  Sum_probs=94.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+..-|.-|+--+++.+|.++|.+|..+.+.-...               +.-.|..|.-.++.++|+..|..|-++-
T Consensus       312 a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpa---------------Wl~fghsfa~e~EhdQAmaaY~tAarl~  376 (611)
T KOG1173|consen  312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPA---------------WLAFGHSFAGEGEHDQAMAAYFTAARLM  376 (611)
T ss_pred             CcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHH---------------HHHHhHHhhhcchHHHHHHHHHHHHHhc
Confidence            4566777888888888888888888888877654433               5566777777778888888888877777


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      |....-++-+|.-|+.+++++.|.+.|.+|+.+.|+++-+..+++.+.-..+...++.+ .|++.+
T Consensus       377 ~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~-~f~~~l  441 (611)
T KOG1173|consen  377 PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALK-YFQKAL  441 (611)
T ss_pred             cCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHH-HHHHHH
Confidence            77777777778888888888888888888888888877777777766555554444442 444444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.72  E-value=4.5e-05  Score=75.51  Aligned_cols=111  Identities=16%  Similarity=0.242  Sum_probs=85.7

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (557)
                      ..+.....++-+.||.||-.|+|++|+..-+.-+.+-.....       .  .-.-.+|.|+|.||.-+++|+.|+++|+
T Consensus       189 gDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD-------r--AaeRRA~sNlgN~hiflg~fe~A~ehYK  259 (639)
T KOG1130|consen  189 GDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD-------R--AAERRAHSNLGNCHIFLGNFELAIEHYK  259 (639)
T ss_pred             hhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh-------H--HHHHHhhcccchhhhhhcccHhHHHHHH
Confidence            345556677778999999999999999988877766432211       0  1123458999999999999999999999


Q ss_pred             HHHcc----CCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          473 KVLDL----DSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       473 ~al~~----~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      +++.+    ...  -+...|.+|.+|.-+.+|++|+.++.+-|++.
T Consensus       260 ~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIA  305 (639)
T KOG1130|consen  260 LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIA  305 (639)
T ss_pred             HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            97653    222  25678999999999999999999998877664

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.70  E-value=0.0003  Score=74.92  Aligned_cols=78  Identities=19%  Similarity=0.141  Sum_probs=70.4

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~  524 (557)
                      .+-+++.+|++|..+|++++|++++++||+..|..+..|+.+|++|.+.|++.+|.+.++.|.++|+.|.-+.....+
T Consensus       193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aK  270 (517)
T PF12569_consen  193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAK  270 (517)
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHH
Confidence            444677899999999999999999999999999999999999999999999999999999999999998755544443

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.69  E-value=0.00026  Score=75.55  Aligned_cols=116  Identities=16%  Similarity=0.151  Sum_probs=99.4

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      .+..+.+.++-++|..+..+|-.+++..               ...|+-+|.++...+++.+|...|..|+.+||+++.+
T Consensus       656 aa~~~~~~~~~~~a~~CL~Ea~~~~~l~---------------~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s  720 (799)
T KOG4162|consen  656 AADLFLLSGNDDEARSCLLEASKIDPLS---------------ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPS  720 (799)
T ss_pred             HHHHHHhcCCchHHHHHHHHHHhcchhh---------------HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHH
Confidence            3445555667777777888887776533               3448888999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          485 LYRRAQAYIQMADLDLAEF--DIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       485 ~~~~g~a~~~lg~~~~A~~--~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      ..-+|.+|+..|+-.-|..  .+..|+++||.|.+++..++.+.+++...++.
T Consensus       721 ~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A  773 (799)
T KOG4162|consen  721 MTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA  773 (799)
T ss_pred             HHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence            9999999999999888888  99999999999999999999998888776643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.69  E-value=0.00074  Score=60.22  Aligned_cols=116  Identities=16%  Similarity=0.238  Sum_probs=91.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      .......||.+...|+|.+|..+|.+|+.=+--+.              ..+++-+|.+++..+++..|....+++.+.+
T Consensus        89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d--------------~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~  154 (251)
T COG4700          89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHD--------------AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN  154 (251)
T ss_pred             HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCC--------------HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC
Confidence            34556789999999999999999999986321111              1236789999999999999999999999998


Q ss_pred             CC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          479 SR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       479 p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      |.  .+....-.|.+|..+|.+.+|...|+.++...|+-. ....+.....++
T Consensus       155 pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~-ar~~Y~e~La~q  206 (251)
T COG4700         155 PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQ-ARIYYAEMLAKQ  206 (251)
T ss_pred             CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHH-HHHHHHHHHHHh
Confidence            75  366778889999999999999999999999998853 333444433333

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=97.65  E-value=0.0013  Score=63.57  Aligned_cols=118  Identities=16%  Similarity=0.056  Sum_probs=92.7

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh
Q 008689          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ  494 (557)
Q Consensus       415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  494 (557)
                      .+..+...+.-+...|.+..-               +.-||.+|+.++++..|...|.+|+++.|+|+..+.-.|.+++.
T Consensus       138 ~~~l~a~Le~~L~~nP~d~eg---------------W~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~  202 (287)
T COG4235         138 MEALIARLETHLQQNPGDAEG---------------WDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYY  202 (287)
T ss_pred             HHHHHHHHHHHHHhCCCCchh---------------HHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            334444555556666655544               66799999999999999999999999999999999999999988


Q ss_pred             cCC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          495 MAD---LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       495 lg~---~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      ...   -.+|.+.|++|+++||+|..+...|........++.+.- ..|+.|+..+.
T Consensus       203 ~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~afe~g~~~~A~-~~Wq~lL~~lp  258 (287)
T COG4235         203 QAGQQMTAKARALLRQALALDPANIRALSLLAFAAFEQGDYAEAA-AAWQMLLDLLP  258 (287)
T ss_pred             hcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHH-HHHHHHHhcCC
Confidence            764   469999999999999999888888887666655555544 36667766554

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.64  E-value=0.00051  Score=73.01  Aligned_cols=84  Identities=18%  Similarity=0.247  Sum_probs=73.9

Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      ..+|...+..++|.+|.++++..++++|-....||++|.|..+++++..|.++|..+..++|+|.+.++.+....-++.+
T Consensus       489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~  568 (777)
T KOG1128|consen  489 RSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKK  568 (777)
T ss_pred             HhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhh
Confidence            33444455679999999999999999999999999999999999999999999999999999999999999888777765


Q ss_pred             HHHH
Q 008689          532 YNKK  535 (557)
Q Consensus       532 ~~~~  535 (557)
                      ..+.
T Consensus       569 k~ra  572 (777)
T KOG1128|consen  569 KKRA  572 (777)
T ss_pred             hHHH
Confidence            5543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.59  E-value=0.00037  Score=76.18  Aligned_cols=137  Identities=15%  Similarity=0.085  Sum_probs=102.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHH------------HHHHHHhhHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKA------------LKVACNLNNAAC  457 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~~~------------~~~~~~~nla~~  457 (557)
                      |..+--.|..|-.--+..+|..+|.+|-++++.+...         ..++++....            .+.-.+..++..
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~y  571 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPY  571 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccc
Confidence            4445556666665557788888888888887655322         1111221111            122223447889


Q ss_pred             HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      |++.+++..|+.+++.+|+.+|.+..+|.-+|.||..-|+|.-|++.|.+|..++|.+.-.+-....+.+.+.+.++.
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkea  649 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEA  649 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHH
Confidence            999999999999999999999999999999999999999999999999999999999976666666666666655543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.59  E-value=0.00051  Score=76.77  Aligned_cols=113  Identities=19%  Similarity=0.222  Sum_probs=85.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh------------------
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL------------------  461 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~------------------  461 (557)
                      .+++..|.+|-+.|++++|...|.+++++.+.++..               ++|+|..|...                  
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~a---------------LNn~AY~~ae~dL~KA~~m~~KAV~~~i~  181 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEI---------------VKKLATSYEEEDKEKAITYLKKAIYRFIK  181 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHH---------------HHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            478889999999999999999999999998765543               44444444444                  


Q ss_pred             -hCHHHHHHHHHHHHccCCCChHHHHH--------HH------------HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689          462 -KDYKQAEKLCTKVLDLDSRNVKALYR--------RA------------QAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       462 -~~~~~A~~~~~~al~~~p~~~ka~~~--------~g------------~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~  520 (557)
                       ++|..+.....+.+..+|.+...+++        ++            .+|....+|++++..|+.+|+++|.|.-++.
T Consensus       182 ~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~  261 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKARE  261 (906)
T ss_pred             hhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHH
Confidence             44444444455555556666554332        24            8888999999999999999999999998888


Q ss_pred             HHHHHHH
Q 008689          521 EYKTLKE  527 (557)
Q Consensus       521 ~l~~l~~  527 (557)
                      .+..|.+
T Consensus       262 ~l~~~y~  268 (906)
T PRK14720        262 ELIRFYK  268 (906)
T ss_pred             HHHHHHH
Confidence            8888866

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.59  E-value=0.00012  Score=50.00  Aligned_cols=42  Identities=29%  Similarity=0.241  Sum_probs=39.1

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      ++..+|.+|..+|++++|+..++++++.+|+|..+++.+|.+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~l   44 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQL   44 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhhC
Confidence            467899999999999999999999999999999999998863

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.58  E-value=0.00011  Score=46.94  Aligned_cols=33  Identities=39%  Similarity=0.564  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      ++|+.+|.+|..+|++++|++.|+++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            578888999999999999999999999888854

...

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.57  E-value=0.00024  Score=70.30  Aligned_cols=108  Identities=20%  Similarity=0.135  Sum_probs=70.9

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH--Hhhh--CHHHHHHHHHHHHccCCCChH
Q 008689          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK--LKLK--DYKQAEKLCTKVLDLDSRNVK  483 (557)
Q Consensus       408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~--~k~~--~~~~A~~~~~~al~~~p~~~k  483 (557)
                      .+++.++++.|.+.++++-+..++                 ....++|.++  +..|  ++++|...|++.....+.+++
T Consensus       140 i~L~~~R~dlA~k~l~~~~~~~eD-----------------~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~  202 (290)
T PF04733_consen  140 ILLKMNRPDLAEKELKNMQQIDED-----------------SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPK  202 (290)
T ss_dssp             HHHHTT-HHHHHHHHHHHHCCSCC-----------------HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-----------------HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHH
Confidence            555666677776666655433211                 1133444433  3344  688888888887777778888


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      .+..+|.|++.+|+|++|.+.++.|+..+|++.+....+..+...+.+.
T Consensus       203 ~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  203 LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-T
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCC
Confidence            8888899999999999999999999888888887777776665555444

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.56  E-value=0.0001  Score=68.14  Aligned_cols=77  Identities=16%  Similarity=0.176  Sum_probs=66.6

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      -+.+|+.-+.|..|+..|.+||.++|..+..|-++|.||+++.+|+.+..+.++|+.++|+.......++.+.....
T Consensus        16 ~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~   92 (284)
T KOG4642|consen   16 QGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK   92 (284)
T ss_pred             ccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence            45677788899999999999999999999999999999999999999999999999999998655555555544443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.56  E-value=0.00066  Score=56.89  Aligned_cols=61  Identities=31%  Similarity=0.247  Sum_probs=56.4

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      -|.....-++.+.|++.+.++|.+.|.++.||.+||+++.-.|+-++|++++++|+++.-.
T Consensus        49 ~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~  109 (175)
T KOG4555|consen   49 KAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGD  109 (175)
T ss_pred             HHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCc
Confidence            3566677899999999999999999999999999999999999999999999999999644

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.54  E-value=0.00069  Score=74.19  Aligned_cols=72  Identities=28%  Similarity=0.238  Sum_probs=67.2

Q ss_pred             HHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      --+..++|++|++.|+++|+.||+|..|++-+|.|+..+++ .++|.+.|..|.+++|+|.-+++-|..+..+
T Consensus        11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nLye~   83 (1238)
T KOG1127|consen   11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNLYER   83 (1238)
T ss_pred             HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHHHHc
Confidence            34567899999999999999999999999999999999999 9999999999999999999999988888777

>PRK10941 hypothetical protein; Provisional

Probab=97.54  E-value=0.00095  Score=64.91  Aligned_cols=81  Identities=15%  Similarity=0.107  Sum_probs=71.6

Q ss_pred             HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (557)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~  524 (557)
                      .+......|+=.+|++.++|+.|+.+++.++.++|+++.-+.-||.+|.+++.+..|+.+|+..++..|+++.+......
T Consensus       178 ~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~q  257 (269)
T PRK10941        178 EVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHH
Confidence            35566678999999999999999999999999999999988889999999999999999999999999999865444333


Q ss_pred             H
Q 008689          525 L  525 (557)
Q Consensus       525 l  525 (557)
                      +
T Consensus       258 l  258 (269)
T PRK10941        258 I  258 (269)
T ss_pred             H
Confidence            3

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.53  E-value=0.001  Score=66.80  Aligned_cols=136  Identities=15%  Similarity=-0.006  Sum_probs=102.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------ChHHHHHHHH------------HHHHHHhhHHHH
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------GDEEKKQAKA------------LKVACNLNNAAC  457 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------~~~~~~~~~~------------~~~~~~~nla~~  457 (557)
                      +.++.+.+.++.|-...+..+|++.|.+|..+.|+++..       .+-+..+.+.            -.+.....||..
T Consensus       556 nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ay  635 (840)
T KOG2003|consen  556 NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAY  635 (840)
T ss_pred             hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHH
Confidence            445666777777777777788888888877777665422       0101111110            112334578999


Q ss_pred             HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      |+...-|++|+.++++|--+.|+..|-....|.|+.+.|+|.+|.+.|+..-.-.|.|.++.+.|-++...+.-.
T Consensus       636 yidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  636 YIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            999999999999999999999999999999999999999999999999999999999999998888875555433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.51  E-value=0.0011  Score=63.23  Aligned_cols=96  Identities=15%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT  524 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~  524 (557)
                      .+|.|.-+++.|+|..|...+..-+..-|++   ..|+|++|.+++.+|+|+.|...|..+.+-.|+++   +..-.|..
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            6689999999999999999999999988886   77999999999999999999999999999988875   55666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhc
Q 008689          525 LKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       525 l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      +..++.+.++.- ..|+.+.++.
T Consensus       224 ~~~~l~~~d~A~-atl~qv~k~Y  245 (262)
T COG1729         224 SLGRLGNTDEAC-ATLQQVIKRY  245 (262)
T ss_pred             HHHHhcCHHHHH-HHHHHHHHHC
Confidence            666666555544 3555555443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.50  E-value=0.00018  Score=45.91  Aligned_cols=33  Identities=24%  Similarity=0.322  Sum_probs=29.7

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      ..++++|.+|+++++|++|+++++++++++|+|
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            357899999999999999999999999999986

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.49  E-value=0.0057  Score=57.41  Aligned_cols=114  Identities=15%  Similarity=0.106  Sum_probs=84.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----------hCHHHHH
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAE  468 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~  468 (557)
                      ......|..+|+.++|..|+..|++-++..|.+...            ..+++.+|.|++++           +...+|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~------------~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~  110 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA------------DYALYMLGLSYYKQIPGILRSDRDQTSTRKAI  110 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH------------HHHHHHHHHHHHHHHHHHH-TT---HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch------------hhHHHHHHHHHHHhCccchhcccChHHHHHHH
Confidence            456788999999999999999999999998876642            12345555555443           4567899


Q ss_pred             HHHHHHHccCCCChHH-----------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          469 KLCTKVLDLDSRNVKA-----------------LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       469 ~~~~~al~~~p~~~ka-----------------~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ..++..+..-|++..+                 -+..|.-|.+.|.|..|+.-++.+++-.|+.......+..+
T Consensus       111 ~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l  184 (203)
T PF13525_consen  111 EEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARL  184 (203)
T ss_dssp             HHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHH
Confidence            9999999999987322                 23458999999999999999999999999998655555444

>PRK15331 chaperone protein SicA; Provisional

Probab=97.43  E-value=0.00078  Score=59.51  Aligned_cols=83  Identities=11%  Similarity=-0.112  Sum_probs=71.0

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      .+..|.-++..|+|++|...+.-...++|.|.+.++-+|.|+..+++|++|+..|-.|..++++|+..--....|.-.+.
T Consensus        40 iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         40 LYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            34678888999999999999999999999999999999999999999999999999999999988755555555555444


Q ss_pred             HHH
Q 008689          531 EYN  533 (557)
Q Consensus       531 ~~~  533 (557)
                      +..
T Consensus       120 ~~~  122 (165)
T PRK15331        120 KAA  122 (165)
T ss_pred             CHH
Confidence            433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.41  E-value=0.0018  Score=68.11  Aligned_cols=102  Identities=11%  Similarity=-0.001  Sum_probs=77.2

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ..++|+-+++++-.+++.+.|...|...++..|+.+-.|..++..-.+.|+.-.|+..|.++..-+|.|...+-+.-++.
T Consensus       684 f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  684 FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRME  763 (913)
T ss_pred             hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            44568888888888888888888888888888888888888888888888888888888888888888876666555555


Q ss_pred             HHHHHHHHHHHHHHHHHhhhccC
Q 008689          527 EKMKEYNKKEAKFYGNMFAKMNT  549 (557)
Q Consensus       527 ~~~~~~~~~~~~~~~~mf~~~~~  549 (557)
                      .+....++.+. +..+.++.+.+
T Consensus       764 lR~gn~~~a~~-lmakALQecp~  785 (913)
T KOG0495|consen  764 LRAGNKEQAEL-LMAKALQECPS  785 (913)
T ss_pred             HHcCCHHHHHH-HHHHHHHhCCc
Confidence            55544444443 45556665544

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.39  E-value=0.0023  Score=55.28  Aligned_cols=68  Identities=19%  Similarity=0.165  Sum_probs=62.5

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~  518 (557)
                      +++.|...++.++|.+|++.++.+...-|..   ..|.+.++.+|.+.++|++|+..+++.++|+|+++.+
T Consensus        13 ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v   83 (142)
T PF13512_consen   13 LYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV   83 (142)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence            6688999999999999999999999887754   7899999999999999999999999999999999744

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=97.39  E-value=0.00047  Score=71.25  Aligned_cols=108  Identities=16%  Similarity=0.149  Sum_probs=92.7

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (557)
Q Consensus       406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (557)
                      |..+-..|+-..|+.+...|+..-|.....+              .-|||.+.++-+-...|-....++|.++..-+-.+
T Consensus       614 glywr~~gn~~~a~~cl~~a~~~~p~~~~v~--------------~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~  679 (886)
T KOG4507|consen  614 GLYWRAVGNSTFAIACLQRALNLAPLQQDVP--------------LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTF  679 (886)
T ss_pred             cceeeecCCcHHHHHHHHHHhccChhhhccc--------------HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHH
Confidence            3333447888999999999997766433322              56999999999999999999999999997778889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       486 ~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      |..|.+|+.|.+.+.|++.|+.|++++|++..+..-|..+..
T Consensus       680 ~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c  721 (886)
T KOG4507|consen  680 LSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKLIRC  721 (886)
T ss_pred             HhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            999999999999999999999999999999999888887765

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.36  E-value=0.002  Score=67.47  Aligned_cols=105  Identities=17%  Similarity=0.135  Sum_probs=91.3

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .-.-+.+.+..+|+.++|.-|++.|...++..+.+...         ....+..-|++.||+++.+.+.|.+++.+|-+.
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~---------~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~  423 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYS---------DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV  423 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhh---------hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence            34567889999999999999999999999988765432         223667789999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      +|.++-.-+...++...-+.-++|+.++.+....
T Consensus       424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             ccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhh
Confidence            9999999999999999999999999998877654

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.34  E-value=0.001  Score=64.16  Aligned_cols=69  Identities=22%  Similarity=0.209  Sum_probs=62.5

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH---HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k---a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~  519 (557)
                      ++..|.-+++.++|++|+..+++++...|....   +.+++|.+|.++++|++|+..|+++++++|+++.+.
T Consensus        35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         35 IYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            567888899999999999999999999998844   559999999999999999999999999999987543

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.33  E-value=0.0028  Score=65.09  Aligned_cols=107  Identities=17%  Similarity=0.159  Sum_probs=93.6

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      .++|+.|+..|++.....+.                  +..-+|.+++..++-.+|++..+++|...|.+...+.-.|..
T Consensus       182 t~~~~~ai~lle~L~~~~pe------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  182 TQRYDEAIELLEKLRERDPE------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEF  243 (395)
T ss_pred             cccHHHHHHHHHHHHhcCCc------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            56788898888886654331                  133578899999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       492 ~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      ++..++++.|++..++|.++.|++-..+..|.++...+.+.+.+-
T Consensus       244 Ll~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            999999999999999999999999999999999999988777654

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.32  E-value=0.002  Score=54.42  Aligned_cols=85  Identities=16%  Similarity=0.226  Sum_probs=69.7

Q ss_pred             HHHHHhhHHHHHHhhhC---HHHHHHHHHHHHc-cCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689          447 KVACNLNNAACKLKLKD---YKQAEKLCTKVLD-LDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~---~~~A~~~~~~al~-~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~  521 (557)
                      ...+.+|+|.|..+..+   -++.+..+...++ -+|. .-..+|.+|..|+++++|++|+.+++..++.+|+|.++..+
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            34457799999888664   6677888888886 4444 36789999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHH
Q 008689          522 YKTLKEKMKE  531 (557)
Q Consensus       522 l~~l~~~~~~  531 (557)
                      -+.++.++.+
T Consensus       111 k~~ied~itk  120 (149)
T KOG3364|consen  111 KETIEDKITK  120 (149)
T ss_pred             HHHHHHHHhh
Confidence            7777777654

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.31  E-value=0.0063  Score=57.15  Aligned_cols=70  Identities=20%  Similarity=0.111  Sum_probs=46.3

Q ss_pred             hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +|+-.+||+..+.-|+.-+++..||..++..|..+++|++|.=+|+..+-+.|-|......+..+.--+.
T Consensus       133 ~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~g  202 (289)
T KOG3060|consen  133 QGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQG  202 (289)
T ss_pred             cCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh
Confidence            4444455555555555555566677777777777777777777777777777777776666666644443

>PRK11906 transcriptional regulator; Provisional

Probab=97.30  E-value=0.00089  Score=68.60  Aligned_cols=88  Identities=15%  Similarity=0.074  Sum_probs=75.4

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHH
Q 008689          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI  493 (557)
Q Consensus       414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~  493 (557)
                      +-.+|.++-.+|+++.+.++.               ++..+|.+....++++.|+..+++|+.++|+.+-++|.+|..+.
T Consensus       319 ~~~~a~~~A~rAveld~~Da~---------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~  383 (458)
T PRK11906        319 AAQKALELLDYVSDITTVDGK---------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHF  383 (458)
T ss_pred             HHHHHHHHHHHHHhcCCCCHH---------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHH
Confidence            345566666666666655543               36778888888999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHhCCCCH
Q 008689          494 QMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       494 ~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ..|+.++|++.+++|++++|.-.
T Consensus       384 ~~G~~~~a~~~i~~alrLsP~~~  406 (458)
T PRK11906        384 HNEKIEEARICIDKSLQLEPRRR  406 (458)
T ss_pred             HcCCHHHHHHHHHHHhccCchhh
Confidence            99999999999999999999864

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.0014  Score=63.99  Aligned_cols=104  Identities=20%  Similarity=0.150  Sum_probs=77.3

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR  487 (557)
Q Consensus       408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~  487 (557)
                      .+..+.+|..|+...+-++...       .||.       ..+...+|.|++.+|+|++|+..|..+..-+..+.+...+
T Consensus        31 dfls~rDytGAislLefk~~~~-------~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vn   96 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLD-------REEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVN   96 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccc-------hhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchh
Confidence            4666788888887776655321       1222       2235678999999999999999999999988888999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +|.|+.-||.|.+|...-.+|    |+++-....+-.+..++
T Consensus        97 LAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahkl  134 (557)
T KOG3785|consen   97 LACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKL  134 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHh
Confidence            999999999999998776554    55554444444443333

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.0075  Score=56.87  Aligned_cols=70  Identities=23%  Similarity=0.348  Sum_probs=66.1

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ...++-|.|.+|+-.++|..|...+.+++..||.++-|..++|.|++.+|+..+|++.++.++...|...
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence            4566789999999999999999999999999999999999999999999999999999999999999864

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.22  E-value=0.00073  Score=66.92  Aligned_cols=92  Identities=22%  Similarity=0.264  Sum_probs=74.1

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q 008689          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (557)
Q Consensus       413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~  492 (557)
                      .+|+.|...|.+..+..+.+               ..+++-+|.|++.+++|++|...+.+++..+|+++.++.++..+.
T Consensus       181 e~~~~A~y~f~El~~~~~~t---------------~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~  245 (290)
T PF04733_consen  181 EKYQDAFYIFEELSDKFGST---------------PKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCS  245 (290)
T ss_dssp             TCCCHHHHHHHHHHCCS--S---------------HHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence            36999999999865433221               233667999999999999999999999999999999999999999


Q ss_pred             HhcCCH-HHHHHHHHHHHHhCCCCHHHH
Q 008689          493 IQMADL-DLAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       493 ~~lg~~-~~A~~~~~~al~l~p~n~~~~  519 (557)
                      ..+|+- +.+.+.+.+....+|+++-+.
T Consensus       246 ~~~gk~~~~~~~~l~qL~~~~p~h~~~~  273 (290)
T PF04733_consen  246 LHLGKPTEAAERYLSQLKQSNPNHPLVK  273 (290)
T ss_dssp             HHTT-TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred             HHhCCChhHHHHHHHHHHHhCCCChHHH
Confidence            999998 677888888888999986443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.20  E-value=0.0024  Score=63.66  Aligned_cols=103  Identities=13%  Similarity=0.120  Sum_probs=82.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-  478 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-  478 (557)
                      .++-+.||.+.=.|+|+.|+++|++++.+-.....-         ..-+...+.||..|.-+++|++||.+..+-|.+- 
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r---------~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAq  306 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNR---------TVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ  306 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcch---------hHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456688999999999999999999998775422211         1122224579999999999999999999976642 


Q ss_pred             -----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          479 -----SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       479 -----p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                           -.-..|++.+|.+|..+|+.++|+...++.+++
T Consensus       307 eL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  307 ELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS  344 (639)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                 234789999999999999999999999888865

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.18  E-value=0.02  Score=56.20  Aligned_cols=72  Identities=19%  Similarity=0.154  Sum_probs=64.0

Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (557)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~  523 (557)
                      +.||.+++..-.|++||..|.++|.-+|+..-.-..+|.||.++.-|+-+.+.++-.|+..|+.+-+.....
T Consensus       155 LSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLka  226 (557)
T KOG3785|consen  155 LSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKA  226 (557)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHH
Confidence            457778888889999999999999999998888889999999999999999999999999999986555544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.15  E-value=0.0039  Score=65.67  Aligned_cols=96  Identities=16%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      +.-.|-.+-..++|.+|+++|+.|+.+.+++..               ++..+|..+.++++|+.....-.+.|+++|.+
T Consensus        78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q---------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~  142 (700)
T KOG1156|consen   78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ---------------ILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQ  142 (700)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH---------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhh
Confidence            444555555566666666666666665443322               25566666666666666666666666666666


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      -..|+-.|.++.-+|+|..|...++...+..
T Consensus       143 ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  143 RASWIGFAVAQHLLGEYKMALEILEEFEKTQ  173 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            6666666666666666666666665555443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.12  E-value=0.0015  Score=46.38  Aligned_cols=40  Identities=25%  Similarity=0.476  Sum_probs=33.3

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g  489 (557)
                      |++.+|..++++++|..|+.+|+.+|+++|+|..|.--+.
T Consensus         3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~   42 (53)
T PF14853_consen    3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKE   42 (53)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred             hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHH
Confidence            5778999999999999999999999999999987754443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.05  E-value=0.0023  Score=62.75  Aligned_cols=137  Identities=20%  Similarity=0.272  Sum_probs=100.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC----------CCCh-----HH-------------HHHHHHHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT----------SFGD-----EE-------------KKQAKALKVA  449 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~----------~~~~-----~~-------------~~~~~~~~~~  449 (557)
                      .+....+.|..+|+..++.+|+..+.+.+..+.+..          ....     ++             ..+-...+..
T Consensus         5 q~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~e   84 (518)
T KOG1941|consen    5 QTKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLE   84 (518)
T ss_pred             hhHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778899999999999999999999987654321          0000     00             0111124566


Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC-----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------H
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------V  518 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~------~  518 (557)
                      .|.|++..+-++.+|.+++.+|...+.+-...     ..++.-+|.||+.++.|++|++.|++|+++.-++.+      +
T Consensus        85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv  164 (518)
T KOG1941|consen   85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV  164 (518)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence            78999999999999999999999998864332     467888999999999999999999999998655543      3


Q ss_pred             HHHHHHHHHHHHHHHH
Q 008689          519 KLEYKTLKEKMKEYNK  534 (557)
Q Consensus       519 ~~~l~~l~~~~~~~~~  534 (557)
                      .-.|..+..+++..++
T Consensus       165 cv~Lgslf~~l~D~~K  180 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEK  180 (518)
T ss_pred             hhhHHHHHHHHHhhhH
Confidence            3344555555555443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=97.05  E-value=0.00031  Score=68.41  Aligned_cols=75  Identities=20%  Similarity=0.220  Sum_probs=62.2

Q ss_pred             HHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      |.-.+..|.++.|+++|..++.++|.+.-.|-.|+.++++|++...|+.+|..|++++|+...-...-...++.+
T Consensus       121 A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rll  195 (377)
T KOG1308|consen  121 ASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLL  195 (377)
T ss_pred             HHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHh
Confidence            344556788999999999999999999999999999999999999999999999999999764443333333333

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.0097  Score=58.00  Aligned_cols=79  Identities=20%  Similarity=0.154  Sum_probs=63.2

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCC----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      |-.-|.-|+|.++|..|+..|.+.|...-.    |+-.|.|||.|.+.+|+|..|+.++.+|++++|.+.-+...=++|.
T Consensus        84 ~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~  163 (390)
T KOG0551|consen   84 YKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCL  163 (390)
T ss_pred             HHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHH
Confidence            345688899999999999999999986432    4667889999999999999999999999999999954333333333


Q ss_pred             HHH
Q 008689          527 EKM  529 (557)
Q Consensus       527 ~~~  529 (557)
                      -.+
T Consensus       164 ~eL  166 (390)
T KOG0551|consen  164 LEL  166 (390)
T ss_pred             HHH
Confidence            333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.01  E-value=0.0017  Score=62.02  Aligned_cols=94  Identities=21%  Similarity=0.346  Sum_probs=77.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .|....+.|..+|+.|+|+.|+..|+.|+......+..               -+|+|.|+++.++|..|+++.++.++.
T Consensus       143 ~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpll---------------AYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  143 EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLL---------------AYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchh---------------HHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            36667889999999999999999999999886554433               569999999999999999999998763


Q ss_pred             ----CCC----------------C---------hHHHHHHHHHHHhcCCHHHHHHHHH
Q 008689          478 ----DSR----------------N---------VKALYRRAQAYIQMADLDLAEFDIK  506 (557)
Q Consensus       478 ----~p~----------------~---------~ka~~~~g~a~~~lg~~~~A~~~~~  506 (557)
                          +|.                |         ..|+.-++.++.+.++++.|.+.+.
T Consensus       208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt  265 (459)
T KOG4340|consen  208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT  265 (459)
T ss_pred             hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence                232                1         4577778899999999999988763

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=96.93  E-value=0.014  Score=61.62  Aligned_cols=127  Identities=18%  Similarity=0.135  Sum_probs=100.7

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHHHHHH---------HHhhHHHHHHhhhCHH
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKALKVA---------CNLNNAACKLKLKDYK  465 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~~~~~~~---------~~~nla~~~~k~~~~~  465 (557)
                      -.+..++..|+...|.....+|.+..+++..+         ...+.+.++.+..+         +|+.-+....-+++.+
T Consensus       589 M~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~e  668 (913)
T KOG0495|consen  589 MYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVE  668 (913)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHH
Confidence            34566778899999999999999887765322         22344444444433         3333444445588999


Q ss_pred             HHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       466 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +|++.|+++|+.-|+..|.|..+|+++..+++.+.|++.|...++.-|...-.+-.|.++..+..
T Consensus       669 eA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  669 EALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999888888888876664

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.92  E-value=0.0015  Score=41.16  Aligned_cols=32  Identities=34%  Similarity=0.507  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      |+|++|.+|..+|++++|++.|+++++..|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            67888888888888888888888888877764

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=96.90  E-value=0.0081  Score=53.75  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=55.9

Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~----------~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      -|+.|++.+..+...+|.++.+++|-|-|++.|.++          ++|+.-|+.||.++|+..++.-.+..+...+..
T Consensus         6 ~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    6 FFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            389999999999999999999999999999999655          688999999999999998888877776555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.89  E-value=0.003  Score=57.82  Aligned_cols=71  Identities=14%  Similarity=0.066  Sum_probs=66.7

Q ss_pred             HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      .++.+++.++..|-.+|-|..|..++.++|.+.|.-+.++.-+|.-+..-|+|+.|.+.|+..+++||.+.
T Consensus        63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~  133 (297)
T COG4785          63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN  133 (297)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch
Confidence            35666888999999999999999999999999999999999999999999999999999999999999974

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.89  E-value=0.0013  Score=41.95  Aligned_cols=33  Identities=27%  Similarity=0.343  Sum_probs=29.7

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      .+|.++|.+|.+++++++|+.+++++++++|+|
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n   34 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            358899999999999999999999999999854

...

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.85  E-value=0.0012  Score=67.40  Aligned_cols=64  Identities=31%  Similarity=0.335  Sum_probs=60.4

Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      -|-|.-+++-+.|+.|+..|.+||+++|+++-.+-+|+.||.+.++|..|+.++.+|++++|..
T Consensus         8 k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~   71 (476)
T KOG0376|consen    8 KNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTY   71 (476)
T ss_pred             hhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchh
Confidence            3667788899999999999999999999999999999999999999999999999999999986

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.80  E-value=0.012  Score=62.45  Aligned_cols=103  Identities=21%  Similarity=0.234  Sum_probs=83.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +--+..+|..+..+|+.+.|+..|++|+..-           .+.+++...|+..+|.||+-+.+|++|..++.+.++. 
T Consensus       267 ~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q-----------~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-  334 (468)
T PF10300_consen  267 ALFLFFEGRLERLKGNLEEAIESFERAIESQ-----------SEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-  334 (468)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhccch-----------hhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-
Confidence            3446678888999999999999999988421           2234566778999999999999999999999999885 


Q ss_pred             CCChHHHH--HHHHHHHhcCCH-------HHHHHHHHHHHHhCC
Q 008689          479 SRNVKALY--RRAQAYIQMADL-------DLAEFDIKKALEIDP  513 (557)
Q Consensus       479 p~~~ka~~--~~g~a~~~lg~~-------~~A~~~~~~al~l~p  513 (557)
                      .++.+|+|  -.|.|+..+++.       ++|.+.|.++-.+-.
T Consensus       335 s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~  378 (468)
T PF10300_consen  335 SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQ  378 (468)
T ss_pred             cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHh
Confidence            45667665  578999999999       888888888876643

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.76  E-value=0.0085  Score=58.95  Aligned_cols=101  Identities=22%  Similarity=0.270  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-  480 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-  480 (557)
                      +-..|+.+...+.|++|++.|++|+++-......         .+-..++..|+..|-.++++++|+.+..+|+++-.. 
T Consensus       125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~---------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~  195 (518)
T KOG1941|consen  125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA---------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY  195 (518)
T ss_pred             hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc---------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence            3447888999999999999999999986543322         123345778999999999999999999999876322 


Q ss_pred             -----C----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          481 -----N----VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       481 -----~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                           +    .-++|+++.++..+|++-.|.++++.|.++
T Consensus       196 ~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  196 GLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             CcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence                 1    347889999999999999999999999876

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.74  E-value=0.0012  Score=42.84  Aligned_cols=28  Identities=29%  Similarity=0.256  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      ||.++|.+|..+|+|++|++.|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4556666666666666666666664443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.68  E-value=0.04  Score=55.11  Aligned_cols=127  Identities=17%  Similarity=0.187  Sum_probs=88.4

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHH
Q 008689          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (557)
Q Consensus       392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~  471 (557)
                      .-.|...+...-..|-.-+-.|+|.+|.+...++.+.-+.               ...+|.--|.+-..+|+++.|=.+.
T Consensus        77 ~~rKrrra~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~---------------p~l~~l~aA~AA~qrgd~~~an~yL  141 (400)
T COG3071          77 SRRKRRRARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQ---------------PVLAYLLAAEAAQQRGDEDRANRYL  141 (400)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcc---------------hHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3356677888888999999999999999999886654321               1223444556666777777777777


Q ss_pred             HHHHcc-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          472 TKVLDL-DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       472 ~~al~~-~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                      .++-+. ..++.-++.-+++.+...+++..|+..+.++++..|.++.+.....++..++.+..
T Consensus       142 ~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~  204 (400)
T COG3071         142 AEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQ  204 (400)
T ss_pred             HHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHH
Confidence            777776 23345566777777777777777777777777777777777666666655554443

>smart00028 TPR Tetratricopeptide repeats

Probab=96.67  E-value=0.003  Score=38.76  Aligned_cols=32  Identities=44%  Similarity=0.657  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      .+++++|.++..++++++|+..|.++++++|+
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35666666666666666776666666666654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.66  E-value=0.035  Score=50.33  Aligned_cols=101  Identities=21%  Similarity=0.159  Sum_probs=79.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ....+.+..++..++++.|....+.++..-.+            ..+...+-.+||.+++.++++++|+...+..-.   
T Consensus        90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~D------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---  154 (207)
T COG2976          90 LAALELAKAEVEANNLDKAEAQLKQALAQTKD------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE---  154 (207)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHccchh------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---
Confidence            34557788889999999999999998854221            134445567899999999999999998876543   


Q ss_pred             CChHH--HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          480 RNVKA--LYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       480 ~~~ka--~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      .+..+  .-.||.+++.+|+-++|+..|++|+..++++
T Consensus       155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            22333  5679999999999999999999999998665

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.66  E-value=0.045  Score=51.56  Aligned_cols=102  Identities=13%  Similarity=0.087  Sum_probs=76.8

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC-------HHHHHHHHHHHHccC
Q 008689          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-------YKQAEKLCTKVLDLD  478 (557)
Q Consensus       406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-------~~~A~~~~~~al~~~  478 (557)
                      +..+-....++.|+..|.-|+-........        ...++.+++.+|.+|..+++       +..|+..+.++++..
T Consensus        84 ~~~~~~~Rt~~~ai~~YkLAll~~~~~~~~--------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e  155 (214)
T PF09986_consen   84 PRDFSGERTLEEAIESYKLALLCAQIKKEK--------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENE  155 (214)
T ss_pred             cCCCCCCCCHHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            335556778999999999998764422211        12466778899999999998       555677777776544


Q ss_pred             CC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          479 SR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       479 p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      ..      ....+|-+|..+.++|++++|+.+|.+++..--.+
T Consensus       156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s  198 (214)
T PF09986_consen  156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS  198 (214)
T ss_pred             cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence            22      36899999999999999999999999999765444

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.62  E-value=0.019  Score=61.34  Aligned_cols=76  Identities=18%  Similarity=0.149  Sum_probs=68.4

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ++-.+.++...|++++|+.+..+....-.+....+-.+|.+|+++|++++|...|...+..+|+|..-...|..+.
T Consensus         7 lLY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen    7 LLYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence            3446677889999999999999988888889999999999999999999999999999999999988888877775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.58  E-value=0.036  Score=52.61  Aligned_cols=131  Identities=15%  Similarity=0.105  Sum_probs=89.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHh-------hhcC----CCChHHHHHHHHH-HHHHHhhHHHHHHhh----hCHH
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYI-------EYDT----SFGDEEKKQAKAL-KVACNLNNAACKLKL----KDYK  465 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~-------~~~~----~~~~~~~~~~~~~-~~~~~~nla~~~~k~----~~~~  465 (557)
                      +-.-|..+.+.++|++|++...+...+-       ....    .....+.+..+.+ --..++.||.++.++    .++.
T Consensus       111 ~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~q  190 (299)
T KOG3081|consen  111 LLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQ  190 (299)
T ss_pred             HHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhh
Confidence            3346778888999999998877622210       0000    0001111222221 112234477777664    3689


Q ss_pred             HHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       466 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      .|...|++.-..-|..+..+.-.|.|++.+++|++|...++.||.-++++++....+-.+...+.+.
T Consensus       191 dAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd  257 (299)
T KOG3081|consen  191 DAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKD  257 (299)
T ss_pred             hHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCC
Confidence            9999999988867778899999999999999999999999999999999988888777665555443

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.57  E-value=0.014  Score=55.39  Aligned_cols=70  Identities=20%  Similarity=0.219  Sum_probs=64.1

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~  520 (557)
                      ++|-|...+..|+|++|++.++.+....|.+   .++..-++.|+++.++|++|+..+++.+.+.|+++++..
T Consensus        37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY  109 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY  109 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH
Confidence            6789999999999999999999999988765   789999999999999999999999999999999875543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.49  E-value=0.034  Score=58.23  Aligned_cols=116  Identities=22%  Similarity=0.197  Sum_probs=83.6

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC---------ChHHHHHHHH--------HHHHH-HhhHHHHHHhh
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF---------GDEEKKQAKA--------LKVAC-NLNNAACKLKL  461 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~---------~~~~~~~~~~--------~~~~~-~~nla~~~~k~  461 (557)
                      ..+...-|.+.+.++|++|+....+.+...|++...         ..+..++.-.        ..... .+..|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            445556677777888999988888888876544321         1111111111        11111 24778999999


Q ss_pred             hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689          462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (557)
Q Consensus       462 ~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~  518 (557)
                      +..++|+..++   .+++...+.+.-+|+.++++++|++|.+.|+...+.+.++.+.
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~  146 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDE  146 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHH
Confidence            99999999999   5667778899999999999999999999999998887776543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.44  E-value=0.038  Score=51.43  Aligned_cols=111  Identities=20%  Similarity=0.113  Sum_probs=80.5

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-hCHHHHHHHHHHHH
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVL  475 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~al  475 (557)
                      +.+..+.+.+| +|++.+.++|+++..+|+++......+         .+..+-+..+|..|-.- .++++||.+|+++-
T Consensus        72 Daat~YveA~~-cykk~~~~eAv~cL~~aieIyt~~Grf---------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aa  141 (288)
T KOG1586|consen   72 DAATTYVEAAN-CYKKVDPEEAVNCLEKAIEIYTDMGRF---------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAA  141 (288)
T ss_pred             hHHHHHHHHHH-HhhccChHHHHHHHHHHHHHHHhhhHH---------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHH
Confidence            34444554444 456678888888888888887654433         12333355667666554 88999999999986


Q ss_pred             ccC------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          476 DLD------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       476 ~~~------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      +.-      ..--|++...|.--..+++|.+|++.|++.....-+|..
T Consensus       142 e~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L  189 (288)
T KOG1586|consen  142 EYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL  189 (288)
T ss_pred             HHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence            642      223688899999999999999999999999988777764

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.39  E-value=0.042  Score=59.00  Aligned_cols=128  Identities=13%  Similarity=0.033  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHHHhhhcCCCCh-------HHHHHHHHHHHHHHhhHHHHHHhhh--------CHHHHHHHHHHHHcc--C
Q 008689          416 ARASKRYEKAVKYIEYDTSFGD-------EEKKQAKALKVACNLNNAACKLKLK--------DYKQAEKLCTKVLDL--D  478 (557)
Q Consensus       416 ~~A~~~y~~Al~~~~~~~~~~~-------~~~~~~~~~~~~~~~nla~~~~k~~--------~~~~A~~~~~~al~~--~  478 (557)
                      ..|..+|-+|..++........       ++..++..-...+|.-+|.||....        ++..+.....+++.+  +
T Consensus       337 ~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~  416 (517)
T PRK10153        337 GAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPEL  416 (517)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccC
Confidence            3677777777776543221101       1111222233445555666665542        345666667776664  7


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      |..+.+|.-+|..+...|++++|...|++|+.++| +......+.++.....+.++... .|++.+.
T Consensus       417 ~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~-~~~~A~~  481 (517)
T PRK10153        417 NVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAAD-AYSTAFN  481 (517)
T ss_pred             cCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHH-HHHHHHh
Confidence            78889999999999999999999999999999999 56788888888777777666653 5555443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.34  E-value=0.0015  Score=41.75  Aligned_cols=33  Identities=27%  Similarity=0.252  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689          421 RYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (557)
Q Consensus       421 ~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~  468 (557)
                      +|++||++.|.+...               |+|+|.+|...|++++|+
T Consensus         1 ~y~kAie~~P~n~~a---------------~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    1 CYKKAIELNPNNAEA---------------YNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             ChHHHHHHCCCCHHH---------------HHHHHHHHHHCcCHHhhc
Confidence            488999998877654               999999999999999986

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.04  Score=57.74  Aligned_cols=68  Identities=15%  Similarity=0.099  Sum_probs=49.9

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (557)
                      ++++-++|+.+..++|+..++ .++-   ..              ..+..-.|.+++++++|++|+..|...++.+-+..
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~-~~~~---~~--------------~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~  144 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK-GLDR---LD--------------DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ  144 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh-cccc---cc--------------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence            578888888888888888887 2211   11              11244579999999999999999999998877666


Q ss_pred             HHHHHH
Q 008689          483 KALYRR  488 (557)
Q Consensus       483 ka~~~~  488 (557)
                      ....|.
T Consensus       145 d~~~r~  150 (652)
T KOG2376|consen  145 DEERRA  150 (652)
T ss_pred             HHHHHH
Confidence            554443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.28  E-value=0.14  Score=47.11  Aligned_cols=57  Identities=32%  Similarity=0.429  Sum_probs=28.6

Q ss_pred             HHhhhCHHHHHHHHHHHHccCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          458 KLKLKDYKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      +...+++..|+..+.+++...+. ...++..++.++...++++.|+..+.+++...|.
T Consensus       177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~  234 (291)
T COG0457         177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD  234 (291)
T ss_pred             HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence            44444555555555555555444 3445555555555555555555555555555444

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.24  E-value=0.029  Score=54.14  Aligned_cols=74  Identities=23%  Similarity=0.171  Sum_probs=66.1

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~  524 (557)
                      -+|.|.-..+.|+.++|...+..||.++|.|+.++.+.|+-...-.+.-+|-.+|-+||.++|.|.++...-.+
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            44677777889999999999999999999999999999999999999999999999999999999766554433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=96.23  E-value=0.0055  Score=39.69  Aligned_cols=28  Identities=21%  Similarity=0.162  Sum_probs=24.1

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      ++.|||.+|.++|+|++|+.+|+++|.+
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3789999999999999999999996654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.11  E-value=0.007  Score=37.99  Aligned_cols=32  Identities=22%  Similarity=0.321  Sum_probs=29.5

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      +++++|.||.++|++++|+..+++++...|++
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s   33 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS   33 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence            46799999999999999999999999998874

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.10  E-value=0.24  Score=48.05  Aligned_cols=116  Identities=17%  Similarity=0.172  Sum_probs=84.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH------
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK------  473 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~------  473 (557)
                      .....++..+...+++..|...|..++...+.....               ..-+|.||+..|+.+.|...+..      
T Consensus       135 e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~---------------~~~la~~~l~~g~~e~A~~iL~~lP~~~~  199 (304)
T COG3118         135 EEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEA---------------KLLLAECLLAAGDVEAAQAILAALPLQAQ  199 (304)
T ss_pred             HHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchH---------------HHHHHHHHHHcCChHHHHHHHHhCcccch
Confidence            335677889999999999999999999988765432               44567777777776554433332      


Q ss_pred             ----------------------------HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHH
Q 008689          474 ----------------------------VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYK  523 (557)
Q Consensus       474 ----------------------------al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~  523 (557)
                                                  .+..||++..+-+.+|..|...|++++|.+.|-..++-+-+  +..+++.+-
T Consensus       200 ~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ll  279 (304)
T COG3118         200 DKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLL  279 (304)
T ss_pred             hhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHH
Confidence                                        23357889999999999999999999999998888876543  335566555


Q ss_pred             HHHHHHH
Q 008689          524 TLKEKMK  530 (557)
Q Consensus       524 ~l~~~~~  530 (557)
                      .+-..+.
T Consensus       280 e~f~~~g  286 (304)
T COG3118         280 ELFEAFG  286 (304)
T ss_pred             HHHHhcC
Confidence            5544443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.10  E-value=0.017  Score=59.04  Aligned_cols=120  Identities=18%  Similarity=0.113  Sum_probs=84.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc---
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD---  476 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~---  476 (557)
                      ..+.-+.+..|-.|+|..|.+.....--........+      -+...-..++|++.+++.++.|..+..++.+||+   
T Consensus       241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T------~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c  314 (696)
T KOG2471|consen  241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTIT------PQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSC  314 (696)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHhcccccccCcccc------chhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHH
Confidence            3445556667777777777665432111111110111      1112233368999999999999999999999995   


Q ss_pred             ------cC---------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          477 ------LD---------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       477 ------~~---------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                            +.         ......+|+.|..|++.|+.-.|.++|.+|....-.|+.++-.+..|
T Consensus       315 ~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEc  378 (696)
T KOG2471|consen  315 SQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAEC  378 (696)
T ss_pred             HHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence                  11         23477899999999999999999999999999988898888777765

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.10  E-value=0.39  Score=47.40  Aligned_cols=124  Identities=15%  Similarity=0.121  Sum_probs=90.8

Q ss_pred             CCChHHHHHHHhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689          389 DMNTEEKIEAAGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (557)
Q Consensus       389 ~~~~~e~~~~a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (557)
                      .+++......+..+.+.|..+++++ +|..|+.-.++|.++++.... ..........++..++..++.+|+..+.++..
T Consensus        25 ~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~-~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~  103 (278)
T PF08631_consen   25 SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGK-MDKLSPDGSELRLSILRLLANAYLEWDTYESV  103 (278)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhh-ccccCCcHHHHHHHHHHHHHHHHHcCCChHHH
Confidence            4566777888999999999999999 999999999999999754211 01122345567888899999999998887644


Q ss_pred             HH---HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689          468 EK---LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (557)
Q Consensus       468 ~~---~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p  513 (557)
                      .+   ..+.+-.--|+.+-.++-.=.++.+.++.+++.+.+.+++.--+
T Consensus       104 ~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  104 EKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            33   33333334466666665656666667889999999988886543

It is also involved in sporulation [].

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.08  E-value=0.064  Score=49.48  Aligned_cols=66  Identities=36%  Similarity=0.481  Sum_probs=61.0

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      ..+.+++.++...+++..|+..+..++...|.....++.++..+...+.+++|...+.+++..+|.
T Consensus       203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         203 EALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            347789999999999999999999999999998888999999999888899999999999999997

>smart00028 TPR Tetratricopeptide repeats

Probab=96.03  E-value=0.012  Score=35.81  Aligned_cols=32  Identities=38%  Similarity=0.471  Sum_probs=29.3

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      ++.++|.|+..+++++.|+.++.++++++|.+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~   34 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN   34 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence            47899999999999999999999999988753

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.99  E-value=0.092  Score=49.26  Aligned_cols=131  Identities=15%  Similarity=0.155  Sum_probs=85.5

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH----HccC-
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LDLD-  478 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~~~-  478 (557)
                      +++-...+..+.+.|+..|++++.++..+...         .+...++...+..+.+++.|.+|-..+.+-    +..+ 
T Consensus       115 eKAak~lenv~Pd~AlqlYqralavve~~dr~---------~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~  185 (308)
T KOG1585|consen  115 EKAAKALENVKPDDALQLYQRALAVVEEDDRD---------QMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDA  185 (308)
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHhccchH---------HHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhh
Confidence            34444455566777777777777776644322         234445677888899999999987777663    3333 


Q ss_pred             -CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          479 -SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       479 -p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                       ++-.|++.-.-.+|+...+|..|..+++..-++.--+  -...-+.|.+.+..+++.+-..+++|.+
T Consensus       186 y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed~r~lenLL~ayd~gD~E~~~kvl~  251 (308)
T KOG1585|consen  186 YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSEDSRSLENLLTAYDEGDIEEIKKVLS  251 (308)
T ss_pred             cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHHHHHHHHHHHHhccCCHHHHHHHHc
Confidence             4446677766777788889999999999987764333  1223344556666666666556666553

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.97  E-value=0.066  Score=51.38  Aligned_cols=76  Identities=20%  Similarity=0.227  Sum_probs=68.4

Q ss_pred             HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~  520 (557)
                      .....+..|+=..++..++|+.|..+..+.+.++|.++..+--+|.+|.+++-+.-|++++...+..-|++..+..
T Consensus       178 ~il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~  253 (269)
T COG2912         178 EILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEM  253 (269)
T ss_pred             HHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHH
Confidence            3455567788899999999999999999999999999999999999999999999999999999999999875433

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.79  E-value=0.13  Score=47.01  Aligned_cols=102  Identities=19%  Similarity=0.158  Sum_probs=78.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .-..+.+.|+.|++.|+++.|++.|.++.+++...            ..++.+++++-.+.+..++|..+..+..+|-.+
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~------------~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~  102 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSP------------GHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL  102 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCH------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35668899999999999999999999988875422            235666788899999999999999999998654


Q ss_pred             CC--CCh----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          478 DS--RNV----KALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       478 ~p--~~~----ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      -.  .++    +.-.-.|.+++..++|.+|-+.|-.+..-
T Consensus       103 ~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t  142 (177)
T PF10602_consen  103 IEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLST  142 (177)
T ss_pred             HhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcC
Confidence            32  222    22233477788889999998888776543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.75  E-value=0.2  Score=51.38  Aligned_cols=91  Identities=21%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHH--------------------------------
Q 008689          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC--------------------------------  457 (557)
Q Consensus       410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~--------------------------------  457 (557)
                      +...+.+.+...|+.+|+++|...-.           .+++++-.|..                                
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFt-----------FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIe  445 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFT-----------FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIE  445 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccch-----------HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHH
Confidence            35788999999999999988754321           12222222222                                


Q ss_pred             -HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          458 -KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       458 -~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                       -+++++|+.|...|.+-|+..|.|..+|...|..-..||+.+.|+..|.-|++.
T Consensus       446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~q  500 (677)
T KOG1915|consen  446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQ  500 (677)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcC
Confidence             345566666666666666666666666666666666666666666666666544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.74  Score=43.41  Aligned_cols=126  Identities=15%  Similarity=0.112  Sum_probs=82.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL---  477 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~---  477 (557)
                      .+...++.+-..++|++|..+..+|++..+++...+         ...+.|-..+...-++..|.++...+++|..+   
T Consensus        33 ~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslf---------hAAKayEqaamLake~~klsEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   33 LYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLF---------HAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHH---------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            334444555557889999999999998877666542         23445666677777788999999999999765   


Q ss_pred             --CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH---HHHHHHHHHHH
Q 008689          478 --DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKT---LKEKMKEYNKK  535 (557)
Q Consensus       478 --~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~~---l~~~~~~~~~~  535 (557)
                        .|+-...-.-+|--.+..-+.++|++.|++++.+--++   ..+...+++   +.-++++..+.
T Consensus       104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Ea  169 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEA  169 (308)
T ss_pred             hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHH
Confidence              24444444445555566778899999999998774333   333333333   34444444443

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.63  E-value=0.071  Score=60.08  Aligned_cols=63  Identities=6%  Similarity=-0.080  Sum_probs=55.9

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      ..|..+..++.+.++++.|...+++++.++|++...|..++.+|...|++++|.+.++...+.
T Consensus       495 ~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~  557 (697)
T PLN03081        495 NMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence            347777788889999999999999999999999999999999999999999999999887754

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.63  E-value=0.18  Score=52.00  Aligned_cols=96  Identities=20%  Similarity=0.188  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC
Q 008689          417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA  496 (557)
Q Consensus       417 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg  496 (557)
                      +-...|+.|....+.+.               +++++.....-|.+.|.+.-..|.++|..+|+++..|.--|.=.+..+
T Consensus        89 rIv~lyr~at~rf~~D~---------------~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n  153 (568)
T KOG2396|consen   89 RIVFLYRRATNRFNGDV---------------KLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN  153 (568)
T ss_pred             HHHHHHHHHHHhcCCCH---------------HHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc
Confidence            33456777766555433               235566555566667999999999999999999999988888777766


Q ss_pred             C-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          497 D-LDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       497 ~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      . .+.|++.|.++|..+|+++.++.++-++.-
T Consensus       154 ~ni~saRalflrgLR~npdsp~Lw~eyfrmEL  185 (568)
T KOG2396|consen  154 LNIESARALFLRGLRFNPDSPKLWKEYFRMEL  185 (568)
T ss_pred             cchHHHHHHHHHHhhcCCCChHHHHHHHHHHH
Confidence            5 999999999999999999998888766543

>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins

Probab=95.59  E-value=0.11  Score=43.18  Aligned_cols=81  Identities=19%  Similarity=0.077  Sum_probs=65.9

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH----Hc
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV----LD  476 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a----l~  476 (557)
                      ++...|+..++.+++-.|+-+|.+|+.+........+.+.++.-.+.+....|||..+..+|+-+-.++|.+-|    +.
T Consensus         3 ~htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt   82 (140)
T PF10952_consen    3 KHTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT   82 (140)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999998776545555666666777777789999999999999999988754    55


Q ss_pred             cCCCC
Q 008689          477 LDSRN  481 (557)
Q Consensus       477 ~~p~~  481 (557)
                      +-|+.
T Consensus        83 LiPQC   87 (140)
T PF10952_consen   83 LIPQC   87 (140)
T ss_pred             hccCC
Confidence            66654

>PRK04841 transcriptional regulator MalT; Provisional

Probab=95.49  E-value=0.15  Score=59.35  Aligned_cols=101  Identities=21%  Similarity=0.118  Sum_probs=63.6

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC---
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS---  479 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p---  479 (557)
                      ...|..++..|++.+|...|.+|+.........         .....++.++|.+++.+|++..|...+.+++.+-.   
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~  565 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVY---------HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQH  565 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhc
Confidence            344555555666666666666666543321111         11233466788888888888888888888776421   


Q ss_pred             -----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          480 -----RNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       480 -----~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                           ...-.+..+|.++...|++++|...+.+++.+.
T Consensus       566 ~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        566 LEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence                 112335567788888888888888888887753

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=95.44  E-value=0.09  Score=55.04  Aligned_cols=129  Identities=12%  Similarity=0.101  Sum_probs=92.7

Q ss_pred             hHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          402 KKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       402 ~k~~G~~~~~-~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      +...+-.|++ +|+..+|+.||..|+.+.+.....             ..++.+|.+..+.|.-.+|--..-.|+.--|.
T Consensus       215 lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~kd-------------i~lLSlaTiL~RaG~sadA~iILhAA~~dA~~  281 (886)
T KOG4507|consen  215 LHNMASFYWRIKGEPYQAVECAMRALHFSSRHNKD-------------IALLSLATVLHRAGFSADAAVILHAALDDADF  281 (886)
T ss_pred             HHHHHHHHHHHcCChhhhhHHHHHHhhhCCccccc-------------chhhhHHHHHHHcccccchhheeehhccCCcc
Confidence            4445555555 889999999999999887754322             23668999999999888887777777776666


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV---KLEYKTLKEKMKEYNKKEAKFYGNM  543 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~---~~~l~~l~~~~~~~~~~~~~~~~~m  543 (557)
                      -..-+|-++.++..+++|.....+|..|++.+|.....   ++..-.|..++.+.-+++.+..+.|
T Consensus       282 ~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~~~q~~~~ISC~~~L~~kleKq~~~l~~~  347 (886)
T KOG4507|consen  282 FTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQAIKQRKHAISCQQKLEQKLEKQHRSLQRT  347 (886)
T ss_pred             ccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56669999999999999999999999999999976422   2222334444444444444333333

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=95.44  E-value=0.17  Score=41.68  Aligned_cols=103  Identities=15%  Similarity=0.121  Sum_probs=72.7

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHH----HHHhhhCHHHHHHHHHHHHccCCC
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA----CKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~----~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      ++..+|++|++-+|++..+..+..-..+...+     -...+.-..+..+|.    --.|..-.-.|++.+.++..+.|.
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-----~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~   76 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-----LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPD   76 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-----HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChh
Confidence            46789999999999999999887655443221     111122222222222    122333356788999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      .+..+|.+|.-+-....|+++..-.+++|.+.
T Consensus        77 ~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv~  108 (111)
T PF04781_consen   77 SAHSLFELASQLGSVKYYKKAVKKAKRGLSVT  108 (111)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccc
Confidence            99999999998888888999999999988763

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.41  E-value=0.16  Score=40.54  Aligned_cols=66  Identities=15%  Similarity=0.108  Sum_probs=51.5

Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHH
Q 008689          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n--~~~~~~l~~l~~~~~~~  532 (557)
                      .+..+.+.+..+|++..+.|.+|.+++..|++++|++.|-.+++-+++.  ..+++.+-.+-..+...
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~   74 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG   74 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence            3567788899999999999999999999999999999999999998765  46666666665555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.29  E-value=0.42  Score=49.13  Aligned_cols=102  Identities=15%  Similarity=0.126  Sum_probs=88.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ......|.---.+++++.|...|.+||+....+               +.+++..|.|-+|.++...|....++|+.+-|
T Consensus        74 ~~WikYaqwEesq~e~~RARSv~ERALdvd~r~---------------itLWlkYae~Emknk~vNhARNv~dRAvt~lP  138 (677)
T KOG1915|consen   74 QVWIKYAQWEESQKEIQRARSVFERALDVDYRN---------------ITLWLKYAEFEMKNKQVNHARNVWDRAVTILP  138 (677)
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHhccccc---------------chHHHHHHHHHHhhhhHhHHHHHHHHHHHhcc
Confidence            344455666667889999999999999876433               34478889999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      .-.+.||..-..-..||+..-|++.|++=++..|+..
T Consensus       139 RVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eq  175 (677)
T KOG1915|consen  139 RVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQ  175 (677)
T ss_pred             hHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHH
Confidence            9999999999888999999999999999999999864

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.29  E-value=0.027  Score=52.18  Aligned_cols=60  Identities=20%  Similarity=0.312  Sum_probs=56.1

Q ss_pred             HHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ...+.++.+.|.+.++++|.+-|.+.-.|||.|....+-|+++.|.+.|.+.++++|.+.
T Consensus         4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            345678899999999999999999999999999999999999999999999999999875

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.26  E-value=0.23  Score=56.06  Aligned_cols=144  Identities=9%  Similarity=-0.007  Sum_probs=96.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHh--hhcCC-----------CChHHHHH-HHHHH--------HHHHhhHHHH
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYI--EYDTS-----------FGDEEKKQ-AKALK--------VACNLNNAAC  457 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~--~~~~~-----------~~~~~~~~-~~~~~--------~~~~~nla~~  457 (557)
                      ..+......|.+.|++++|+..|++..+.-  |+...           -.-++..+ .+.+.        ...|..+..+
T Consensus       392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~  471 (697)
T PLN03081        392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL  471 (697)
T ss_pred             eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHH
Confidence            345566677777888888888888766431  11000           00011111 11111        1247778889


Q ss_pred             HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (557)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~  537 (557)
                      |.+.|++++|.+.+++. ...| +...|..+..++...|+++.|+..+++.+.++|++......+..+..+..+.++..+
T Consensus       472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~  549 (697)
T PLN03081        472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAK  549 (697)
T ss_pred             HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHH
Confidence            99999999999988765 2334 456788888999999999999999999999999987777777777777666665553


Q ss_pred             HHHHHHhhh
Q 008689          538 KFYGNMFAK  546 (557)
Q Consensus       538 ~~~~~mf~~  546 (557)
                       .++.|-.+
T Consensus       550 -v~~~m~~~  557 (697)
T PLN03081        550 -VVETLKRK  557 (697)
T ss_pred             -HHHHHHHc
Confidence             55555544

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.13  E-value=0.37  Score=56.36  Aligned_cols=62  Identities=8%  Similarity=-0.040  Sum_probs=38.0

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      .|+.+-.+|.+.|++++|++.+++..+.+ +.+...|..+..+|.+.|++++|++.|++..+.
T Consensus       581 TynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~  643 (1060)
T PLN03218        581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK  643 (1060)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence            45555556666666666666666666554 334555666666666666666666666666554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=95.12  E-value=0.1  Score=50.72  Aligned_cols=74  Identities=14%  Similarity=0.130  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          438 EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       438 ~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      ++....+++.++++..++..+...++++.++.+.++.+..+|.+-++|.++=.+|+..|+...|+..|++..++
T Consensus       143 ~~R~~l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         143 EQRRALEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45566778889999999999999999999999999999999999999999999999999999999999998874

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.11  E-value=0.24  Score=47.79  Aligned_cols=130  Identities=12%  Similarity=0.079  Sum_probs=69.0

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHH------HHHHHHHHHhhHHHHHHhh
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQ------AKALKVACNLNNAACKLKL  461 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~nla~~~~k~  461 (557)
                      .+.-.|-.||...+|..|..+|.+.....|....+             ..+-...      ...++..|.---|++.+..
T Consensus        46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse  125 (459)
T KOG4340|consen   46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE  125 (459)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence            35567889999999999999999877665532111             0000000      0001111111111122222


Q ss_pred             hCHHHHHHHHHHHHccCC--CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          462 KDYKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       462 ~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      +++-.|.    -.++.-|  +......+.|....+-|+|++|.+-|+.|++...-++-+...+..+.-+.+++..
T Consensus       126 ~Dl~g~r----sLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyas  196 (459)
T KOG4340|consen  126 GDLPGSR----SLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYAS  196 (459)
T ss_pred             ccCcchH----HHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHH
Confidence            2222211    1222223  3455666777777777888888888888887777666666666655544444433

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.06  E-value=0.26  Score=51.10  Aligned_cols=129  Identities=20%  Similarity=0.169  Sum_probs=84.7

Q ss_pred             CChHHHHHHHhhhHHH------HHHHHH---cCcHHHHHHHHHHHHHHhhhcCCCCh------H--HHHHH--HHHHHHH
Q 008689          390 MNTEEKIEAAGKKKEQ------GNTLFK---AGKYARASKRYEKAVKYIEYDTSFGD------E--EKKQA--KALKVAC  450 (557)
Q Consensus       390 ~~~~e~~~~a~~~k~~------G~~~~~---~~~y~~A~~~y~~Al~~~~~~~~~~~------~--~~~~~--~~~~~~~  450 (557)
                      -+.+.+++.|.+-.+.      +-.++.   .....+|.+.|++|++.-+.......      .  +....  .....-+
T Consensus       182 Rnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~  261 (539)
T PF04184_consen  182 RNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYA  261 (539)
T ss_pred             CCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhh
Confidence            4666666666443322      112222   23478888999998886543221100      0  00001  1122333


Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEI-DPDNRDV  518 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-~p~n~~~  518 (557)
                      ...+|.|..++|+.++|++.+...++..|.  +...++++-.+++.++.|.++...+.+.-.+ -|+...+
T Consensus       262 KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti  332 (539)
T PF04184_consen  262 KRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATI  332 (539)
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHH
Confidence            457999999999999999999999987765  5778999999999999999999999886544 3455433

The molecular function of this protein is uncertain.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=95.01  E-value=0.23  Score=49.05  Aligned_cols=127  Identities=14%  Similarity=0.101  Sum_probs=84.8

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-hhCHHHHHHHHHHHHccCCCChH
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVK  483 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~~k  483 (557)
                      ..+..-+.+..+.|...|.+|++...  ..             ..+|...|...+. .++.+.|...++.+++.-|.+..
T Consensus         7 ~m~~~~r~~g~~~aR~vF~~a~~~~~--~~-------------~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~   71 (280)
T PF05843_consen    7 YMRFMRRTEGIEAARKVFKRARKDKR--CT-------------YHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD   71 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCC--S--------------THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH
T ss_pred             HHHHHHHhCChHHHHHHHHHHHcCCC--CC-------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH
Confidence            33444455558899999999974211  11             1236667777566 56777799999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      .+.....-+..+++.+.|+..|++++..-|...   .++..+-....+...... -.+.++++...+
T Consensus        72 ~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~-v~~v~~R~~~~~  137 (280)
T PF05843_consen   72 FWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLES-VRKVEKRAEELF  137 (280)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHH-HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHh
Confidence            999999999999999999999999998877765   344444444444332222 223454554443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PLN03218 maturation of RBCL 1; Provisional

Probab=94.99  E-value=0.44  Score=55.71  Aligned_cols=60  Identities=7%  Similarity=-0.157  Sum_probs=32.0

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      |+.+..+|.+.+++++|+..+.+.++.. +.+...|..+..+|.+.|++++|++.|++..+
T Consensus       652 ynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~  712 (1060)
T PLN03218        652 FSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKS  712 (1060)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            4444555555555555555555555432 22344555555566666666666666655543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.93  E-value=0.18  Score=58.66  Aligned_cols=100  Identities=10%  Similarity=0.058  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-  480 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-  480 (557)
                      ....|..++..|+|..|...+.+|+...+...          ......++.++|.++...|++++|+..+.+++..... 
T Consensus       455 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~  524 (903)
T PRK04841        455 NALRAQVAINDGDPEEAERLAELALAELPLTW----------YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH  524 (903)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh
Confidence            34467888899999999999999998643211          0113334678999999999999999999999875321 


Q ss_pred             -----ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          481 -----NVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       481 -----~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                           ...++.++|.++..+|++++|...+.+++.+
T Consensus       525 g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        525 DVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 1457788999999999999999999999986

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=94.92  E-value=0.18  Score=38.62  Aligned_cols=67  Identities=15%  Similarity=0.215  Sum_probs=53.9

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      .+....++|..+|.+.+.++|+..+++|++......            .+-.++.-++.+|...|+|.+++.+.-+=+.
T Consensus         5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~------------~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~   71 (80)
T PF10579_consen    5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE------------DRFRVLGYLIQAHMEWGKYREMLAFALQQLE   71 (80)
T ss_pred             HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567888999999999999999999999998765422            2344466788899999999999888776544

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=94.91  E-value=0.04  Score=36.54  Aligned_cols=29  Identities=21%  Similarity=0.186  Sum_probs=20.5

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+++|+|.+|..+|+|++|+.++.+++.+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677777777777777777777777654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=94.90  E-value=0.29  Score=47.23  Aligned_cols=75  Identities=15%  Similarity=0.086  Sum_probs=65.2

Q ss_pred             CChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          435 FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       435 ~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                      +.+++.+-+..+..+++.-.|..|++.+.+.+|+++|++++.+||-+...+.-+-..|..+|+--.|++.|++.-
T Consensus       266 Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya  340 (361)
T COG3947         266 WAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA  340 (361)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence            344567778888888888889999999999999999999999999999999999999999999888887776643

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=94.85  E-value=0.35  Score=53.30  Aligned_cols=113  Identities=18%  Similarity=0.174  Sum_probs=77.7

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHH
Q 008689          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (557)
Q Consensus       409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~  488 (557)
                      ....++|.+|+....+.++..|+...             ..+  --|..+.++|++++|....+..-..-+++...+--+
T Consensus        19 ~ld~~qfkkal~~~~kllkk~Pn~~~-------------a~v--LkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l   83 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKHPNALY-------------AKV--LKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFL   83 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHCCCcHH-------------HHH--HHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHH
Confidence            34567788888888887776664321             112  246677888888888855544444556667777778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689          489 AQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (557)
Q Consensus       489 g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~  537 (557)
                      -.||..++++++|...|+++...+|+ ......+=.+..+....+++++
T Consensus        84 ~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~qQk  131 (932)
T KOG2053|consen   84 QNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKKQQK  131 (932)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888888888888 5555555556666655555443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.81  E-value=0.5  Score=48.09  Aligned_cols=115  Identities=19%  Similarity=0.095  Sum_probs=80.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCCCC------------------hHHHHHHHHHHHHHHhhHHHHHHhh
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTSFG------------------DEEKKQAKALKVACNLNNAACKLKL  461 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~-~~~~~~~~~------------------~~~~~~~~~~~~~~~~nla~~~~k~  461 (557)
                      ...+.+..++.+|+...|+...+..+. .+.......                  .............+++-+|.-...+
T Consensus       186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~  265 (352)
T PF02259_consen  186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL  265 (352)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence            344566777777888888888877776 332221000                  0012333455667777788777777


Q ss_pred             ------hCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH-----------------HHHHHHHHHHHHhCCCC
Q 008689          462 ------KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL-----------------DLAEFDIKKALEIDPDN  515 (557)
Q Consensus       462 ------~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~-----------------~~A~~~~~~al~l~p~n  515 (557)
                            +.++.++..+.+++.++|++.++|++.|..+..+=+.                 ..|+..|-+|+.+.++.
T Consensus       266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~~  342 (352)
T PF02259_consen  266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSKY  342 (352)
T ss_pred             ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCCc
Confidence                  8899999999999999999999999998888776332                 24778888888887773

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.66  E-value=0.71  Score=47.72  Aligned_cols=123  Identities=17%  Similarity=0.246  Sum_probs=78.4

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh--hhC-----HHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKD-----YKQA  467 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--~~~-----~~~A  467 (557)
                      .+.......+.|-.+|..|+|.+|+..|+..|..++-....+.++..+++++...|..-+-.+.+.  .+.     .+..
T Consensus       200 ~l~~L~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~  279 (422)
T PF06957_consen  200 SLSSLEERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQ  279 (422)
T ss_dssp             -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhH
Confidence            344444556679999999999999999999999988777677778888888776665544433333  222     2233


Q ss_pred             HHHHHHHH-----ccCCCChHHHHHHHH-HHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          468 EKLCTKVL-----DLDSRNVKALYRRAQ-AYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       468 ~~~~~~al-----~~~p~~~ka~~~~g~-a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      .+.|+-+.     .+.|.|.-.-.|.|+ ..+++++|.-|-...++.|++.|....
T Consensus       280 kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~~  335 (422)
T PF06957_consen  280 KRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPEV  335 (422)
T ss_dssp             HHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCHH
T ss_pred             HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHH
Confidence            34444432     344444433344444 346789999999999999999998753

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=94.43  E-value=0.47  Score=42.84  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=66.1

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHc-cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLD-LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR--DVKLEYKTLKE  527 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~-~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~--~~~~~l~~l~~  527 (557)
                      .+.||.....+|++.+|..+|.+++. +-..+...+.-++++...++++-.|...+++..+.+|...  +-.-.+.+...
T Consensus        92 r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la  171 (251)
T COG4700          92 RYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA  171 (251)
T ss_pred             HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH
Confidence            55789999999999999999999987 3456678899999999999999999999999999988643  33444555444


Q ss_pred             HHHHHH
Q 008689          528 KMKEYN  533 (557)
Q Consensus       528 ~~~~~~  533 (557)
                      .+.+..
T Consensus       172 a~g~~a  177 (251)
T COG4700         172 AQGKYA  177 (251)
T ss_pred             hcCCch
Confidence            444333

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=94.41  E-value=0.087  Score=50.93  Aligned_cols=84  Identities=19%  Similarity=0.205  Sum_probs=65.9

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      +...|......+....+.|+.++|...|..|+.+.|.....               +..++...-.-++.-+|-.+|-+|
T Consensus       112 ~~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~---------------L~e~G~f~E~~~~iv~ADq~Y~~A  176 (472)
T KOG3824|consen  112 KVKEAILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQI---------------LIEMGQFREMHNEIVEADQCYVKA  176 (472)
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHH---------------HHHHhHHHHhhhhhHhhhhhhhee
Confidence            34444444556667788999999999999999998876543               455666655567788899999999


Q ss_pred             HccCCCChHHHHHHHHHHH
Q 008689          475 LDLDSRNVKALYRRAQAYI  493 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~  493 (557)
                      |.++|.|.+|+.+|++..-
T Consensus       177 LtisP~nseALvnR~RT~p  195 (472)
T KOG3824|consen  177 LTISPGNSEALVNRARTTP  195 (472)
T ss_pred             eeeCCCchHHHhhhhccch
Confidence            9999999999999987543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.39  E-value=0.83  Score=43.68  Aligned_cols=92  Identities=18%  Similarity=0.161  Sum_probs=72.2

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      ...++.|...|..--+..+..+               .+.+-+|.|++.+++|++|......+|..+++.+..+-++-.+
T Consensus       186 gek~qdAfyifeE~s~k~~~T~---------------~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~  250 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTP---------------LLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVL  250 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCCh---------------HHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            3457888888877665333322               2366789999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHH-HHHHHhCCCCHHH
Q 008689          492 YIQMADLDLAEFDI-KKALEIDPDNRDV  518 (557)
Q Consensus       492 ~~~lg~~~~A~~~~-~~al~l~p~n~~~  518 (557)
                      -..+|.-.++.+.+ .+....+|+.+-+
T Consensus       251 a~~~Gkd~~~~~r~l~QLk~~~p~h~~v  278 (299)
T KOG3081|consen  251 ALHLGKDAEVTERNLSQLKLSHPEHPFV  278 (299)
T ss_pred             HHHhCCChHHHHHHHHHHHhcCCcchHH
Confidence            99999887766554 5555667887543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=0.76  Score=45.26  Aligned_cols=33  Identities=21%  Similarity=0.321  Sum_probs=26.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~  432 (557)
                      +.....+..++.+|++.+|...+.+.++-.|.+
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtD  136 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTD  136 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHhCchh
Confidence            445556777889999999999999998876654

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.32  E-value=0.35  Score=51.36  Aligned_cols=76  Identities=18%  Similarity=0.090  Sum_probs=64.2

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~  520 (557)
                      ...++-|-|.-+++.++|..+++.|...+..-|.      ..|....++.||+.|.+.+.|.+.+..|-+.+|.+.-.+.
T Consensus       353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~  432 (872)
T KOG4814|consen  353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQL  432 (872)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHH
Confidence            4455568899999999999999999999886543      3788888999999999999999999999999999964444


Q ss_pred             HH
Q 008689          521 EY  522 (557)
Q Consensus       521 ~l  522 (557)
                      ..
T Consensus       433 ~~  434 (872)
T KOG4814|consen  433 LM  434 (872)
T ss_pred             HH
Confidence            33

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=94.31  E-value=0.76  Score=40.24  Aligned_cols=90  Identities=20%  Similarity=0.169  Sum_probs=63.0

Q ss_pred             HHHHHhhhCHHHHHHHHHHHHccCC--------C--------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          455 AACKLKLKDYKQAEKLCTKVLDLDS--------R--------------NVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       455 a~~~~k~~~~~~A~~~~~~al~~~p--------~--------------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      |......++...++..+.+++.+-.        .              ...++.+++.++...|++++|+..+++++.++
T Consensus        13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d   92 (146)
T PF03704_consen   13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQRALALD   92 (146)
T ss_dssp             HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence            4444556678888888888877531        1              24466678899999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          513 PDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       513 p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      |-|..+...+-++...+.+.....+ .|.++-.
T Consensus        93 P~~E~~~~~lm~~~~~~g~~~~A~~-~Y~~~~~  124 (146)
T PF03704_consen   93 PYDEEAYRLLMRALAAQGRRAEALR-VYERYRR  124 (146)
T ss_dssp             TT-HHHHHHHHHHHHHTT-HHHHHH-HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHHHH-HHHHHHH
Confidence            9999888888888777766655442 4444433

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.14  E-value=0.58  Score=47.06  Aligned_cols=112  Identities=16%  Similarity=0.080  Sum_probs=70.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ..-....+..+.+.|+++.|.+.-..+++..-+..                 + -+=.-.++.+++..=++..++.+..+
T Consensus       263 p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~-----------------L-~~~~~~l~~~d~~~l~k~~e~~l~~h  324 (400)
T COG3071         263 PELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR-----------------L-CRLIPRLRPGDPEPLIKAAEKWLKQH  324 (400)
T ss_pred             hhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh-----------------H-HHHHhhcCCCCchHHHHHHHHHHHhC
Confidence            33444566677888999999999988887532110                 0 01122345666667777777777777


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      |+++-.++-+|+.+++.+.|.+|...|+.|++..|+..+ ...+..+..++
T Consensus       325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~-~~~la~~~~~~  374 (400)
T COG3071         325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASD-YAELADALDQL  374 (400)
T ss_pred             CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhh-HHHHHHHHHHc
Confidence            777777777777777777777777777777777666532 33444443333

>PLN03077 Protein ECB2; Provisional

Probab=94.06  E-value=0.59  Score=54.12  Aligned_cols=141  Identities=11%  Similarity=0.061  Sum_probs=91.4

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHH--hhhcCCC-----------ChHHH-HHHHHH--------HHHHHhhHHHHH
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKY--IEYDTSF-----------GDEEK-KQAKAL--------KVACNLNNAACK  458 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~--~~~~~~~-----------~~~~~-~~~~~~--------~~~~~~nla~~~  458 (557)
                      .+......|.+.|+.++|+..|++..+.  .|+..++           .-++. .-.+.+        ....|..+..++
T Consensus       556 s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l  635 (857)
T PLN03077        556 SWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLL  635 (857)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            3556778888999999999999987753  2221111           00111 111111        223567777888


Q ss_pred             HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAK  538 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~  538 (557)
                      .+.|++++|.+.+++. .+.|+ ...|-.+-.++..-++.+.|....+++++++|++......+..+.....+.++..+ 
T Consensus       636 ~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~-  712 (857)
T PLN03077        636 GRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR-  712 (857)
T ss_pred             HhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH-
Confidence            8888888888888774 34443 45555555667777888888888888889999888777777777766666555443 


Q ss_pred             HHHHHh
Q 008689          539 FYGNMF  544 (557)
Q Consensus       539 ~~~~mf  544 (557)
                      ..+.|-
T Consensus       713 vr~~M~  718 (857)
T PLN03077        713 VRKTMR  718 (857)
T ss_pred             HHHHHH
Confidence            333443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.01  E-value=0.61  Score=48.46  Aligned_cols=127  Identities=15%  Similarity=0.098  Sum_probs=70.4

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhcCCC----ChHH---HHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          407 NTLFKAGKYARASKRYEKAVKYIEYDTSF----GDEE---KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~----~~~~---~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ...++..+.++-++.=++|+++.+..+..    .+|+   ..+...+..+. .+.|...++..+........-..+....
T Consensus       176 q~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEeA~Ti~Eae~l~rqA-vkAgE~~lg~s~~~~~~g~~~e~~~~Rd  254 (539)
T PF04184_consen  176 QKAWRERNPQARIKAAKEALEINPDCADAYILLAEEEASTIVEAEELLRQA-VKAGEASLGKSQFLQHHGHFWEAWHRRD  254 (539)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhcccccccCHHHHHHHHHHH-HHHHHHhhchhhhhhcccchhhhhhccc
Confidence            34577889999999999999998865432    1111   11111111111 1122222222221111111111121112


Q ss_pred             CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHHH
Q 008689          480 RN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       480 ~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~~~~~~~~  534 (557)
                      .+  +-+-+|+|+|..++|+.+||++.++..++..|.  +..++..|-.+.-.+++..+
T Consensus       255 t~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad  313 (539)
T PF04184_consen  255 TNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYAD  313 (539)
T ss_pred             cchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHH
Confidence            22  455678999999999999999999999998886  34566666555444444433

The molecular function of this protein is uncertain.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.01  E-value=1.5  Score=45.32  Aligned_cols=102  Identities=25%  Similarity=0.266  Sum_probs=78.7

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      +...+.-+.-.|.....-+.|+.|..+|..|.+....            ..+.+-|..|+|..|++.++-+.    +.++
T Consensus       363 r~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~------------~dl~a~~nlnlAi~YL~~~~~ed----~y~~  426 (629)
T KOG2300|consen  363 RAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES------------IDLQAFCNLNLAISYLRIGDAED----LYKA  426 (629)
T ss_pred             HHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH------------HHHHHHHHHhHHHHHHHhccHHH----HHHH
Confidence            3445666777888888889999999999999987542            34577788999999999776443    3333


Q ss_pred             Hc-cCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          475 LD-LDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       475 l~-~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      ++ +.|.|          ..++|-.|.-.+..+++.||...+.+.++..
T Consensus       427 ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  427 LDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            33 34443          4578889999999999999999999999886

>PLN03077 Protein ECB2; Provisional

Probab=93.89  E-value=0.53  Score=54.49  Aligned_cols=82  Identities=16%  Similarity=0.100  Sum_probs=65.9

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------------------
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------------------  511 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------------------  511 (557)
                      +|..|-.++...++.+.|....+++++++|++...|..++.+|...|+|++|.+..+...+.                  
T Consensus       659 ~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~  738 (857)
T PLN03077        659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVH  738 (857)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEE
Confidence            35555555667889999999999999999999999999999999999999999999877642                  


Q ss_pred             --------CCCCHHHHHHHHHHHHHHHH
Q 008689          512 --------DPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       512 --------~p~n~~~~~~l~~l~~~~~~  531 (557)
                              .|...++...|..+..++++
T Consensus       739 ~f~~~d~~h~~~~~i~~~l~~l~~~~~~  766 (857)
T PLN03077        739 AFLTDDESHPQIKEINTVLEGFYEKMKA  766 (857)
T ss_pred             EEecCCCCCcchHHHHHHHHHHHHHHHh
Confidence                    24455677777777666653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.68  E-value=0.15  Score=33.65  Aligned_cols=30  Identities=33%  Similarity=0.268  Sum_probs=26.5

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      ..++.++|.+|..+|++++|+..+++++.+
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            357899999999999999999999999976

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=93.62  E-value=0.43  Score=38.47  Aligned_cols=64  Identities=16%  Similarity=0.238  Sum_probs=41.4

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      ...+.++|..|++.+.+..+..........      .........|+|.++...|++++|+..+++++++
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~------~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~   70 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSS------NSGLAYALLNLAELHRRFGHYEEALQALEEAIRL   70 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchh------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            456789999999999999887654332210      1112223556777777777777777777776654

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.52  E-value=3.6  Score=37.62  Aligned_cols=104  Identities=19%  Similarity=0.209  Sum_probs=70.0

Q ss_pred             HHHHHHcC---cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHH------HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          406 GNTLFKAG---KYARASKRYEKAVKYIEYDTSFGDEEKKQAKA------LKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       406 G~~~~~~~---~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~------~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      |=.|++..   +...|...|.+++..............++...      +-.-..+.+|..+...+++++|+..++.+|.
T Consensus        38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~  117 (207)
T COG2976          38 GWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALA  117 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHc
Confidence            33444444   45588899999998875443322222222211      2222344677788899999999999999996


Q ss_pred             cC-CCChH--HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          477 LD-SRNVK--ALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       477 ~~-p~~~k--a~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                      .- ..+.+  +-.|+|.+...++++++|+..+....
T Consensus       118 ~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~  153 (207)
T COG2976         118 QTKDENLKALAALRLARVQLQQKKADAALKTLDTIK  153 (207)
T ss_pred             cchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc
Confidence            53 23444  45699999999999999999887643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=93.52  E-value=0.69  Score=49.28  Aligned_cols=94  Identities=11%  Similarity=0.021  Sum_probs=69.7

Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC----ChHHHHHHH
Q 008689          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR----NVKALYRRA  489 (557)
Q Consensus       414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~----~~ka~~~~g  489 (557)
                      +...|...........|+..-+               +...|..+...++.++|++.+++++.....    ..-++|.+|
T Consensus       248 ~~~~a~~lL~~~~~~yP~s~lf---------------l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~  312 (468)
T PF10300_consen  248 PLEEAEELLEEMLKRYPNSALF---------------LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELA  312 (468)
T ss_pred             CHHHHHHHHHHHHHhCCCcHHH---------------HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHH
Confidence            4445555555555555543322               667899999999999999999999864332    245789999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      .+|+.+.+|++|.++|.+..+.+.-.+.....+
T Consensus       313 w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~  345 (468)
T PF10300_consen  313 WCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYL  345 (468)
T ss_pred             HHHHHHchHHHHHHHHHHHHhccccHHHHHHHH
Confidence            999999999999999999998776655544443

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.11  E-value=1.8  Score=50.34  Aligned_cols=77  Identities=17%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTL  525 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l  525 (557)
                      ++|..|+-.|.+-+++++|.+.++..++.-.+..+.|.+.|..++...+-++|...+++||+.-|.  +.++....+.+
T Consensus      1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred             HHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHH
Confidence            446667788888888888888888888766677888888899888888888899999999988887  33444444433

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.09  E-value=0.35  Score=48.71  Aligned_cols=97  Identities=13%  Similarity=0.124  Sum_probs=77.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL---  477 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~---  477 (557)
                      .+.+.|..|+..|+++.|+++|.+|-+++.+.            ...+..+.|+-.+-+-+++|.+...+.++|...   
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~------------khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~  219 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSA------------KHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA  219 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcch------------HHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence            46678899999999999999999988887532            223445678888888899999999999999876   


Q ss_pred             -CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          478 -DS----RNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       478 -~p----~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                       ..    -..+...--|.|++.+++|..|.+.|-.+.
T Consensus       220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence             11    135666778999999999999999987765

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.02  E-value=0.39  Score=40.90  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=35.3

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR  488 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~  488 (557)
                      -.|.+-||..|+++++|++++.+++..|+.+|+|..|.--+
T Consensus        71 Re~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk  111 (149)
T KOG3364|consen   71 RECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK  111 (149)
T ss_pred             hhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence            34566799999999999999999999999999998775443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=92.97  E-value=3  Score=41.14  Aligned_cols=104  Identities=18%  Similarity=0.162  Sum_probs=75.4

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHcc----CC---C
Q 008689          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDL----DS---R  480 (557)
Q Consensus       409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~----~p---~  480 (557)
                      ..++|+++.|..+|.|+-.+......       .........++|.|...++.+ +|+.|+.+.++++++    .+   .
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~-------~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~   75 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDP-------DMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL   75 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCc-------HHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc
Confidence            46789999999999999988742111       112334556789999999999 999999999999876    21   1


Q ss_pred             -------ChHHHHHHHHHHHhcCCHH---HHHHHHHHHHHhCCCCHHHH
Q 008689          481 -------NVKALYRRAQAYIQMADLD---LAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       481 -------~~ka~~~~g~a~~~lg~~~---~A~~~~~~al~l~p~n~~~~  519 (557)
                             ..+.+.-++.+|+..+.++   +|...++.+..-.|+...+.
T Consensus        76 ~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   76 SPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             CCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence                   2557778899999988765   45555555655667765555

It is also involved in sporulation [].

>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=92.49  E-value=1  Score=34.56  Aligned_cols=35  Identities=20%  Similarity=0.248  Sum_probs=31.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ..|..+-.++..+-+.|+|.+|+.+|.+|++++-.
T Consensus         4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~   38 (76)
T cd02681           4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY   38 (76)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            45778888999999999999999999999998754

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.42  E-value=0.49  Score=38.12  Aligned_cols=58  Identities=17%  Similarity=0.208  Sum_probs=46.9

Q ss_pred             HHHhhhCHHHHHHHHHHHHccCCC---------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          457 CKLKLKDYKQAEKLCTKVLDLDSR---------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~---------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      -.++.++|..|++...+.+.....         ..-|+.++|..+..+|++++|+..++.|+.+--.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are   73 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE   73 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            346789999998888887664321         2468899999999999999999999999988543

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.25  E-value=0.27  Score=32.14  Aligned_cols=29  Identities=24%  Similarity=0.217  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      .+|.++|.+-+..++|++|+.+|++|+++
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46778888888888999999999888876

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.94  E-value=1.1  Score=34.63  Aligned_cols=35  Identities=17%  Similarity=0.241  Sum_probs=30.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ..|..+..+|..+-+.|+|.+|+.+|.+||+++..
T Consensus         4 ~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~   38 (77)
T cd02683           4 LAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ   38 (77)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            45677888999999999999999999999998754

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.81  E-value=3.8  Score=42.25  Aligned_cols=75  Identities=11%  Similarity=0.127  Sum_probs=59.6

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHH
Q 008689          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----DVKLEYKTLKEK  528 (557)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~----~~~~~l~~l~~~  528 (557)
                      .=|...+..|+|.+|..++.=+.+..| ++.+|.-+|.|++...+|++|..+|.+   +-|++.    .+.+.+..|++.
T Consensus       467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lCqKh  542 (549)
T PF07079_consen  467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK---LPPNERMRDSKVQKALALCQKH  542 (549)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh---CCCchhhHHHHHHHHHHHHHHh
Confidence            345667789999999999999999999 999999999999999999999999865   344332    355556666665


Q ss_pred             HHH
Q 008689          529 MKE  531 (557)
Q Consensus       529 ~~~  531 (557)
                      +.+
T Consensus       543 ~~k  545 (549)
T PF07079_consen  543 LPK  545 (549)
T ss_pred             hhh
Confidence            543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=91.67  E-value=2  Score=32.89  Aligned_cols=36  Identities=25%  Similarity=0.204  Sum_probs=31.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      .+.|..+-.++..+-+.|+|.+|+.+|++|++++-.
T Consensus         3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q   38 (75)
T cd02682           3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            356778888999999999999999999999998754

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=91.58  E-value=0.44  Score=46.38  Aligned_cols=76  Identities=18%  Similarity=0.213  Sum_probs=64.1

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH-HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR-RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~-~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ++...+....+.+-|.+.-..|.++|..+|.|+..|.. -+.-+...++++.|++.|.+++.++|+++.++.++-++
T Consensus       109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyfr~  185 (435)
T COG5191         109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYFRM  185 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHHHH
Confidence            35556666677889999999999999999999987766 45557778999999999999999999999888876554

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=91.45  E-value=1.2  Score=49.44  Aligned_cols=88  Identities=11%  Similarity=0.063  Sum_probs=74.6

Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      ..++|++|+..|.++++..|+..-|..-.|..+.++|++++|..+++..-.+-+++......+..|.+.+.+..+.-. .
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~-~   99 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVH-L   99 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHH-H
Confidence            467899999999999999999999999999999999999999988887777777887788888889888888777653 6


Q ss_pred             HHHHhhhcc
Q 008689          540 YGNMFAKMN  548 (557)
Q Consensus       540 ~~~mf~~~~  548 (557)
                      |.+..++-.
T Consensus       100 Ye~~~~~~P  108 (932)
T KOG2053|consen  100 YERANQKYP  108 (932)
T ss_pred             HHHHHhhCC
Confidence            666665543

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=91.35  E-value=2.1  Score=42.26  Aligned_cols=96  Identities=14%  Similarity=0.113  Sum_probs=69.7

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~-lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      |..+.....+.+..+.|...+.+|+...+.+...|...|..-+. .++.+-|.+.|+.+++..|.+.+++..+-.....+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            45555666677779999999999998777788899999998666 56666699999999999999988887776655555


Q ss_pred             HHHHHHHHHHHHHHhhhc
Q 008689          530 KEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       530 ~~~~~~~~~~~~~mf~~~  547 (557)
                      ...+ .-+.+|.+....+
T Consensus        84 ~d~~-~aR~lfer~i~~l  100 (280)
T PF05843_consen   84 NDIN-NARALFERAISSL  100 (280)
T ss_dssp             T-HH-HHHHHHHHHCCTS
T ss_pred             CcHH-HHHHHHHHHHHhc
Confidence            4333 3345666666554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.35  E-value=6.7  Score=35.73  Aligned_cols=76  Identities=17%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID--PDNRDVKLEY  522 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--p~n~~~~~~l  522 (557)
                      ...+..+|..|.+.|+++.|++.|.++.......   ...+++.-++....++|..+...+.+|..+-  +.+.+.+..+
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl  115 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL  115 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            3457899999999999999999999998865432   6678899999999999999999999998763  3344444444


Q ss_pred             H
Q 008689          523 K  523 (557)
Q Consensus       523 ~  523 (557)
                      .
T Consensus       116 k  116 (177)
T PF10602_consen  116 K  116 (177)
T ss_pred             H
Confidence            3

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PRK10941 hypothetical protein; Provisional

Probab=91.13  E-value=1.4  Score=42.95  Aligned_cols=78  Identities=12%  Similarity=-0.053  Sum_probs=64.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      .-+.+.=..+.+.++|+.|+++-+..+.+.|.++..               +--+|.+|.+++.+..|+.+++.-++..|
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e---------------~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYE---------------IRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHH---------------HHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            334555577889999999999999999998876632               44689999999999999999999999999


Q ss_pred             CChHHHHHHHHHH
Q 008689          480 RNVKALYRRAQAY  492 (557)
Q Consensus       480 ~~~ka~~~~g~a~  492 (557)
                      +.+-+-.-+.+..
T Consensus       247 ~dp~a~~ik~ql~  259 (269)
T PRK10941        247 EDPISEMIRAQIH  259 (269)
T ss_pred             CchhHHHHHHHHH
Confidence            9988766555543

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.07  E-value=4.7  Score=38.64  Aligned_cols=109  Identities=19%  Similarity=0.198  Sum_probs=79.8

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc----cC
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD----LD  478 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~----~~  478 (557)
                      ....+.+...|.|.-....|++.++..+..              ...+...|+.+.++.|+-+.|..+++++-+    ++
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~--------------~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~  246 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQ--------------EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD  246 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcc--------------cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh
Confidence            345667777788888888888888754321              223466789999999999999999996543    22


Q ss_pred             --CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          479 --SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       479 --p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                        -.+.-.+.+.+.+|...++|-+|...|.+.+..||.+..+....+.|
T Consensus       247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             ccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence              23345666777777888899999999999999999987555544444

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=91.06  E-value=2.7  Score=49.03  Aligned_cols=81  Identities=17%  Similarity=0.147  Sum_probs=70.8

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ..++...|...+++++-+.|.....+||..-|.  +....-.-|+.-.+.|+-+.++..|+-.+.-+|.-.+++..+-..
T Consensus      1564 ~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1564 RKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDM 1643 (1710)
T ss_pred             hhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHH
Confidence            456778889999999999999999999999887  788888899999999999999999999999999988888777554


Q ss_pred             HHH
Q 008689          526 KEK  528 (557)
Q Consensus       526 ~~~  528 (557)
                      ..+
T Consensus      1644 eik 1646 (1710)
T KOG1070|consen 1644 EIK 1646 (1710)
T ss_pred             HHc
Confidence            433

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=90.94  E-value=2.7  Score=48.26  Aligned_cols=120  Identities=11%  Similarity=0.049  Sum_probs=83.5

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (557)
                      .-.+.++..+.|++|+..|++...-.|....-.    +..-..-++++ ..|.-.-....|.+|+.-+++.-. .|.-+-
T Consensus       480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~  553 (932)
T PRK13184        480 AVPDAFLAEKLYDQALIFYRRIRESFPGRKEGY----EAQFRLGITLL-EKASEQGDPRDFTQALSEFSYLHG-GVGAPL  553 (932)
T ss_pred             cCcHHHHhhHHHHHHHHHHHHHhhcCCCcccch----HHHHHhhHHHH-HHHHhcCChHHHHHHHHHHHHhcC-CCCCch
Confidence            445678888999999999999887776544322    22222222221 222222223468888888887543 466677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      -|.-+|.+|..+++|+|-+++|..|++-.|+.+.+-.....+--++
T Consensus       554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  599 (932)
T PRK13184        554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRL  599 (932)
T ss_pred             HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHH
Confidence            8999999999999999999999999999999987766665554333

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.89  E-value=0.23  Score=51.09  Aligned_cols=96  Identities=18%  Similarity=0.083  Sum_probs=71.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHH-HhhhcCC-CCh---HHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVK-YIEYDTS-FGD---EEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~-~~~~~~~-~~~---~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (557)
                      ......+.|..+|+.+.|+.++..|.+|++ .+..... ...   --....+  .-.+.+|.+..|+..|+...|.+++.
T Consensus       282 ~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nk--s~eilYNcG~~~Lh~grPl~AfqCf~  359 (696)
T KOG2471|consen  282 SCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNK--SMEILYNCGLLYLHSGRPLLAFQCFQ  359 (696)
T ss_pred             hheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhccc--chhhHHhhhHHHHhcCCcHHHHHHHH
Confidence            344556889999999999999999999996 3322110 000   0001111  22346799999999999999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHhc
Q 008689          473 KVLDLDSRNVKALYRRAQAYIQM  495 (557)
Q Consensus       473 ~al~~~p~~~ka~~~~g~a~~~l  495 (557)
                      ++...-..|+..|.|+|.|.+.-
T Consensus       360 ~av~vfh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  360 KAVHVFHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHH
Confidence            99998888999999999988753

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=90.84  E-value=0.84  Score=30.93  Aligned_cols=25  Identities=36%  Similarity=0.477  Sum_probs=20.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          486 YRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       486 ~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      +.+|.+|..+|+++.|++.++.++.
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHH
Confidence            5678888888888888888888874

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.78  E-value=3.4  Score=43.74  Aligned_cols=116  Identities=18%  Similarity=0.196  Sum_probs=69.2

Q ss_pred             chhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHH
Q 008689          326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ  405 (557)
Q Consensus       326 ~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~  405 (557)
                      +.-..+..++..|.++....+.++..|+-                                      ...+..|...+..
T Consensus       256 qaq~~F~~av~~~d~n~v~~lL~ssPYHv--------------------------------------dsLLqva~~~r~q  297 (665)
T KOG2422|consen  256 QAQRDFYLAVIVHDPNNVLILLISSPYHV--------------------------------------DSLLQVADIFRFQ  297 (665)
T ss_pred             HHHHHHHHHHhhcCCcceeeeeccCCcch--------------------------------------hHHHHHHHHHHHh
Confidence            45567889999999999988887664432                                      2334455555555


Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHh--hhcCCCChHH-HHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          406 GNTLFKAGKYARASKRYEKAVKYI--EYDTSFGDEE-KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       406 G~~~~~~~~y~~A~~~y~~Al~~~--~~~~~~~~~~-~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      |..-..+.-.++|+-.+.+|+.-.  +......-+- .-+.+.+...++ .--....+.|.|..|.++|+-.+.++|.
T Consensus       298 gD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~-r~m~~l~~RGC~rTA~E~cKlllsLdp~  374 (665)
T KOG2422|consen  298 GDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALF-RYMQSLAQRGCWRTALEWCKLLLSLDPS  374 (665)
T ss_pred             cchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHH-HHHHHHHhcCChHHHHHHHHHHhhcCCc
Confidence            555555555666666666666421  1111000000 112222333333 2334455789999999999999999998

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=90.77  E-value=3  Score=37.04  Aligned_cols=80  Identities=18%  Similarity=-0.010  Sum_probs=62.2

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +..+..+-++.++...+...+..+--+.|.+...-.--|..|...|+|.+|+..|+.+..-.|..+.++..+..|...+.
T Consensus        13 Lie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~   92 (160)
T PF09613_consen   13 LIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence            44566666777788888888877777888888888888888888888888888888887777888777777777765554

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.33  E-value=0.93  Score=29.22  Aligned_cols=33  Identities=24%  Similarity=0.128  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH--HHHHHHhCCCC
Q 008689          483 KALYRRAQAYIQMADLDLAEFD--IKKALEIDPDN  515 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~--~~~al~l~p~n  515 (557)
                      +.++-.|..+...|+|++|+..  |+-+..+++.|
T Consensus         2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n   36 (36)
T PF07720_consen    2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN   36 (36)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred             cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence            4566677777777777777777  44666666654

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.16  E-value=3.1  Score=43.14  Aligned_cols=100  Identities=23%  Similarity=0.162  Sum_probs=80.0

Q ss_pred             HHhhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHH
Q 008689          398 AAGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVL  475 (557)
Q Consensus       398 ~a~~~k~~G~~~~~-~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al  475 (557)
                      .|..+.+.|..+|. .+|++.|..+.++|..+....+.+.        ..+-..+.-||.||.... .+..|.....+++
T Consensus        45 eart~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~fy--------dvKf~a~SlLa~lh~~~~~s~~~~KalLrkai  116 (629)
T KOG2300|consen   45 EARTHLQLGALLLRYTKNVELAKSHLEKAWLISKSIPSFY--------DVKFQAASLLAHLHHQLAQSFPPAKALLRKAI  116 (629)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHcccccHH--------hhhhHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence            45666677777765 8999999999999999887666553        233344667888888888 8999999999999


Q ss_pred             ccCCCC----hHHHHHHHHHHHhcCCHHHHHHHH
Q 008689          476 DLDSRN----VKALYRRAQAYIQMADLDLAEFDI  505 (557)
Q Consensus       476 ~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~  505 (557)
                      ++...+    .|.+|.+++.+.-..+|.-|++.+
T Consensus       117 elsq~~p~wsckllfQLaql~~idkD~~sA~elL  150 (629)
T KOG2300|consen  117 ELSQSVPYWSCKLLFQLAQLHIIDKDFPSALELL  150 (629)
T ss_pred             HHhcCCchhhHHHHHHHHHHHhhhccchhHHHHH
Confidence            986554    678899999999999999888874

>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.13  E-value=2.3  Score=32.56  Aligned_cols=60  Identities=22%  Similarity=0.205  Sum_probs=40.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNA  455 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla  455 (557)
                      +..|..+..+|...-+.++|.+|+.+|..|++++.... ...++...+.-..++.-|+.+|
T Consensus         3 l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RA   63 (75)
T cd02677           3 LEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRA   63 (75)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence            45677888889999999999999999999999876532 1223333333333444454444

This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.

>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=90.05  E-value=1.9  Score=33.11  Aligned_cols=36  Identities=25%  Similarity=0.118  Sum_probs=31.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      +..|..+..+|...-..|+|++|+.+|..|++++-.
T Consensus         3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~   38 (75)
T cd02684           3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence            456788889999999999999999999999998754

This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=89.76  E-value=2.8  Score=31.47  Aligned_cols=36  Identities=22%  Similarity=0.349  Sum_probs=31.4

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ++.|..+..+|..+-+.|+|++|+.+|.+|++.+..
T Consensus         2 ~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~   37 (69)
T PF04212_consen    2 LDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQ   37 (69)
T ss_dssp             HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            356778889999999999999999999999998653

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.59  E-value=2.4  Score=32.54  Aligned_cols=36  Identities=22%  Similarity=0.299  Sum_probs=32.0

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ++.|..+..+|...-..|+|++|+.+|.+|++.+-.
T Consensus         3 ~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~   38 (75)
T cd02678           3 LQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMH   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456888889999999999999999999999998754

This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.54  E-value=6  Score=44.04  Aligned_cols=123  Identities=18%  Similarity=0.230  Sum_probs=83.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-------hhCHHHH-
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYKQA-  467 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------~~~~~~A-  467 (557)
                      +.......+.|-.+...|+|.+|+++|+.+|-..+-.-..+.++..+++++...|..-+....+.       ....+.+ 
T Consensus       988 l~~l~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ 1067 (1202)
T KOG0292|consen  988 LSQLNKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQL 1067 (1202)
T ss_pred             HHHHHHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHH
Confidence            56677778899999999999999999999998777655555566666666665553333322211       2234444 


Q ss_pred             -HHHHHHHHccCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689          468 -EKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (557)
Q Consensus       468 -~~~~~~al~~~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~  518 (557)
                       +..|-.-+.+.|-+ .-|+..--.++.++++|..|-....+.+++.|..+.+
T Consensus      1068 ElAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A 1120 (1202)
T KOG0292|consen 1068 ELAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVA 1120 (1202)
T ss_pred             HHHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHH
Confidence             22222234555655 4444445568899999999999999999999987543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.52  E-value=6.7  Score=39.74  Aligned_cols=126  Identities=17%  Similarity=0.090  Sum_probs=86.9

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      +.+..+...+..+.+.|+|+.|.....++....+.....           ...+..-.|......|+..+|+...+..+.
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~-----------~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL-----------LPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC-----------CcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445667788888999999999999999988765322211           011133445555666777777776666655


Q ss_pred             c--C--------------------------------CCChHHHHHHHHHHHhc------CCHHHHHHHHHHHHHhCCCCH
Q 008689          477 L--D--------------------------------SRNVKALYRRAQAYIQM------ADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       477 ~--~--------------------------------p~~~ka~~~~g~a~~~l------g~~~~A~~~~~~al~l~p~n~  516 (557)
                      .  .                                ....++++.+|.-...+      +.++++++.|+.|.+++|+..
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  292 (352)
T PF02259_consen  213 CRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE  292 (352)
T ss_pred             HHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence            0  0                                11256777888877778      888999999999999999987


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 008689          517 DVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       517 ~~~~~l~~l~~~~~~~~  533 (557)
                      .+...++.....+-...
T Consensus       293 k~~~~~a~~~~~~~~~~  309 (352)
T PF02259_consen  293 KAWHSWALFNDKLLESD  309 (352)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            77777766655554333

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.37  E-value=0.49  Score=44.11  Aligned_cols=60  Identities=18%  Similarity=0.207  Sum_probs=52.2

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      ..+++.+++..|.+.|++|+.+.+....-               +..++....|.++++.|...+.++|++||.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~g---------------wfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAG---------------WFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhh---------------hhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            34677899999999999999988765433               6788999999999999999999999999876

>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=89.01  E-value=3.9  Score=31.63  Aligned_cols=66  Identities=17%  Similarity=0.111  Sum_probs=50.0

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHHHHHHHHhhHHHHHHhh
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKALKVACNLNNAACKLKL  461 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~------~~~~~~~~~~~~~~~~~~~nla~~~~k~  461 (557)
                      ...|....+.|..+-..|+.++|+.+|+++++.+....      ....++++.+..++.+.-.|+..+-.++
T Consensus         5 ~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL   76 (79)
T cd02679           5 YKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRL   76 (79)
T ss_pred             HHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35677788888888889999999999999999876532      2244677777777777777777665443

This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=88.92  E-value=4.8  Score=41.28  Aligned_cols=81  Identities=19%  Similarity=0.200  Sum_probs=54.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC--CC------------C-hHHHHHHHHHHHHHHhhHHHHHHhhhC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT--SF------------G-DEEKKQAKALKVACNLNNAACKLKLKD  463 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~--~~------------~-~~~~~~~~~~~~~~~~nla~~~~k~~~  463 (557)
                      +..+.+.+..+..+|++..|....++|+-.++...  .+            . +-...+.+.+... .........+.|.
T Consensus        40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffla-l~r~i~~L~~RG~  118 (360)
T PF04910_consen   40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLA-LFRYIQSLGRRGC  118 (360)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHH-HHHHHHHHHhcCc
Confidence            55667777788888888888888888876554210  00            0 0012223333333 3456677788999


Q ss_pred             HHHHHHHHHHHHccCCC
Q 008689          464 YKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       464 ~~~A~~~~~~al~~~p~  480 (557)
                      |..|++.|+-.+.+||.
T Consensus       119 ~rTAlE~~KlLlsLdp~  135 (360)
T PF04910_consen  119 WRTALEWCKLLLSLDPD  135 (360)
T ss_pred             HHHHHHHHHHHHhcCCC
Confidence            99999999999999998

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=88.69  E-value=2.3  Score=41.09  Aligned_cols=66  Identities=20%  Similarity=0.210  Sum_probs=48.9

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+.|.++|+.|+|+.|+..|..+........-         ..+...+...+..|+.++++.+..+..|-+.+.
T Consensus       181 ~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW---------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLls  246 (247)
T PF11817_consen  181 SLEMAEEYFRLGDYDKALKLLEPAASSYRREGW---------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELLS  246 (247)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            347888999999999999999988655443221         134555677888899999998888888877654

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=88.57  E-value=3.7  Score=31.39  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=30.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      +..|..+...|...-+.|+|++|+.+|..|++.+-.
T Consensus         3 ~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~   38 (75)
T cd02656           3 LQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQ   38 (75)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            356777788889999999999999999999998754

The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.56  E-value=4.9  Score=43.90  Aligned_cols=92  Identities=25%  Similarity=0.212  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHcC-----cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHHHHHHH
Q 008689          402 KKEQGNTLFKAG-----KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTK  473 (557)
Q Consensus       402 ~k~~G~~~~~~~-----~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~  473 (557)
                      ....|..|++..     ++..|+..|.+|.+.-..+.                 .+++|.||..-.   ++..|.+++..
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a-----------------~~~lg~~~~~g~~~~d~~~A~~yy~~  353 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA-----------------QYLLGVLYETGTKERDYRRAFEYYSL  353 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH-----------------HHHHHHHHHcCCccccHHHHHHHHHH
Confidence            445777777743     78899999999998754332                 567888888765   67899999998


Q ss_pred             HHccCCCChHHHHHHHHHHHhc----CCHHHHHHHHHHHHHhC
Q 008689          474 VLDLDSRNVKALYRRAQAYIQM----ADLDLAEFDIKKALEID  512 (557)
Q Consensus       474 al~~~p~~~ka~~~~g~a~~~l----g~~~~A~~~~~~al~l~  512 (557)
                      |...  .++.|++++|.||..-    .+...|..++++|-..+
T Consensus       354 Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  354 AAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            8764  6789999999998764    46789999999999887

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.49  E-value=0.67  Score=27.30  Aligned_cols=24  Identities=29%  Similarity=0.239  Sum_probs=15.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHH
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIK  506 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~  506 (557)
                      .+++.+|.+|..+|++++|+..++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356666777777777777766554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.45  E-value=6.8  Score=43.44  Aligned_cols=34  Identities=21%  Similarity=0.502  Sum_probs=30.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      .+.-++..|+.+|++|+|++|...|.+++..++.
T Consensus       367 ~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~  400 (933)
T KOG2114|consen  367 LAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEP  400 (933)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCCh
Confidence            3567889999999999999999999999987654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=88.39  E-value=3  Score=41.26  Aligned_cols=91  Identities=15%  Similarity=0.018  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      .+-.-..+|-.|+...-...+.+.+.....+.+.           ..-++--+|-|....|-|.+|.+..+++|++++.+
T Consensus       140 ~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~-----------~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D  208 (491)
T KOG2610|consen  140 VKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPC-----------YSYVHGMYAFGLEECGIYDDAEKQADRALQINRFD  208 (491)
T ss_pred             hhhhhhHHHhccchhhhhhHHHHhccccCCCCcH-----------HHHHHHHHHhhHHHhccchhHHHHHHhhccCCCcc
Confidence            3344455666777777777777666543322211           22234456788889999999999999999999887


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHH
Q 008689          482 VKALYRRAQAYIQMADLDLAEF  503 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~  503 (557)
                      ..|..-++-++...+++.++.+
T Consensus       209 ~Wa~Ha~aHVlem~~r~Keg~e  230 (491)
T KOG2610|consen  209 CWASHAKAHVLEMNGRHKEGKE  230 (491)
T ss_pred             hHHHHHHHHHHHhcchhhhHHH
Confidence            6655544444444444444333

>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.90  E-value=15  Score=36.28  Aligned_cols=91  Identities=22%  Similarity=0.282  Sum_probs=69.5

Q ss_pred             HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC------CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCCC
Q 008689          445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS------RN--VKALYRRAQAYIQMADLDLAEFDIKKALE--IDPD  514 (557)
Q Consensus       445 ~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p------~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~--l~p~  514 (557)
                      +....+...||..|-+.++|..|.....- +.++.      .+  ...+.|+|.+|+..++-.+|....+++--  .+..
T Consensus       100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~  178 (399)
T KOG1497|consen  100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS  178 (399)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence            34566778899999999999998876653 33332      11  33466899999999999999999998754  3668


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Q 008689          515 NRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       515 n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      |..+..+++.|..+.-..+.+.
T Consensus       179 Ne~Lqie~kvc~ARvlD~krkF  200 (399)
T KOG1497|consen  179 NEQLQIEYKVCYARVLDYKRKF  200 (399)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHH
Confidence            8899999999988887666543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=87.71  E-value=16  Score=37.43  Aligned_cols=42  Identities=14%  Similarity=0.215  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      .+--++.|..-.+++++|++.+++++++.|.......-++.+
T Consensus       307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni  348 (374)
T PF13281_consen  307 DVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI  348 (374)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence            334567778888999999999999999999887655555444

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=87.55  E-value=2.2  Score=43.95  Aligned_cols=102  Identities=16%  Similarity=0.206  Sum_probs=65.1

Q ss_pred             HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH-HHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCC--CHHHHHH
Q 008689          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQ-MADLDLAEFDIKKALEIDPD--NRDVKLE  521 (557)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~-lg~~~~A~~~~~~al~l~p~--n~~~~~~  521 (557)
                      -.+++++..|-||+.+++|.+|++.++.+|..-. ..| .++.+.--|-. .+..|+....+--++.+.|.  +..+...
T Consensus       162 ~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~-r~k~~~~~~~~q~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~  240 (404)
T PF10255_consen  162 CHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQ-RTKNQYHQRSYQYDQINKKNEQMYALLAICLSLCPQRLDESISSQ  240 (404)
T ss_pred             hheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhccccchhhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHH
Confidence            4567788999999999999999999999986421 112 22233222222 34456677777778888886  3444444


Q ss_pred             HHH-HHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          522 YKT-LKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       522 l~~-l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      ++. ...++.+-...+.+.|..+|...-
T Consensus       241 lkeky~ek~~kmq~gd~~~f~elF~~ac  268 (404)
T PF10255_consen  241 LKEKYGEKMEKMQRGDEEAFEELFSFAC  268 (404)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHhhC
Confidence            432 344444444445678888887653

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=87.40  E-value=3.2  Score=42.58  Aligned_cols=102  Identities=22%  Similarity=0.195  Sum_probs=75.5

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc---------c-----
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD---------L-----  477 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~---------~-----  477 (557)
                      ...|+++...|..|+.........   ..-....+.+..++.+|.++..+|++..|-+.+++||-         .     
T Consensus         7 s~~Y~~~q~~F~~~v~~~Dp~~l~---~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~   83 (360)
T PF04910_consen    7 SKAYQEAQEQFYAAVQSHDPNALI---NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRS   83 (360)
T ss_pred             CHHHHHHHHHHHHHHHccCHHHHH---HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            345777888887777643211100   11122334677788999999999999999999999863         2     


Q ss_pred             C------------CCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CH
Q 008689          478 D------------SRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-NR  516 (557)
Q Consensus       478 ~------------p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~-n~  516 (557)
                      +            +.|   ..|+||..+.+.+.|-+.-|.+.++-.+++||. |+
T Consensus        84 ~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP  138 (360)
T PF04910_consen   84 NLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDP  138 (360)
T ss_pred             ccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCc
Confidence            1            112   568999999999999999999999999999999 55

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=87.13  E-value=3.6  Score=31.46  Aligned_cols=35  Identities=23%  Similarity=0.062  Sum_probs=31.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      +.|..+..+|...-..|+|++|+..|..|++++-.
T Consensus         4 ~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~   38 (75)
T cd02680           4 ERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN   38 (75)
T ss_pred             HHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence            46777888899999999999999999999999875

This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=86.59  E-value=7.7  Score=32.49  Aligned_cols=75  Identities=17%  Similarity=0.178  Sum_probs=56.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      |-.+--....+...|+|++++..-.+||.++........++.    .+-+.+-+|+|.++-.+|..++|+..++.+-++
T Consensus        55 A~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG----klWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   55 AFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG----KLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH----HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc----hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence            455666777888999999999999999999887665544333    234555679999999999999999999998653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=86.44  E-value=8.6  Score=36.47  Aligned_cols=119  Identities=15%  Similarity=0.132  Sum_probs=68.0

Q ss_pred             HHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC-HHHHH-HHHHHHHc-cC-CCChHH
Q 008689          409 LFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAE-KLCTKVLD-LD-SRNVKA  484 (557)
Q Consensus       409 ~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-~~~A~-~~~~~al~-~~-p~~~ka  484 (557)
                      +|..|+|+.|+....-||+..-..+.-.   ......+.+.-..+-|....+.|+ ++-+. ..+..+.. .+ |+.+.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f---~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrA  169 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQF---RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRA  169 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccc---cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHH
Confidence            4557899999999999998744332110   001112233334455555555554 11111 11122211 11 444555


Q ss_pred             HHHH--HHHHH---------hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          485 LYRR--AQAYI---------QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       485 ~~~~--g~a~~---------~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      -+.+  |.+++         ..++...|+..|++|+.++|+- -++..++++.++++.
T Consensus       170 Kl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~-GVK~~i~~l~~~lr~  226 (230)
T PHA02537        170 KLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKC-GVKKDIERLERRLKA  226 (230)
T ss_pred             HHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCC-ChHHHHHHHHHHHhh
Confidence            4444  44442         3457889999999999999875 477788888777753

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=86.36  E-value=5.6  Score=37.49  Aligned_cols=85  Identities=14%  Similarity=0.105  Sum_probs=53.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .|=-++..++......-+..|+..|.+|...-......         .-...+.+-+|..+.++|++++|+.++.+++..
T Consensus       124 lAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~---------~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  124 LAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEG---------MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCC---------chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            33334455554445555677777777777653321111         012234667899999999999999999999986


Q ss_pred             CCCCh-HHHHHHHHH
Q 008689          478 DSRNV-KALYRRAQA  491 (557)
Q Consensus       478 ~p~~~-ka~~~~g~a  491 (557)
                      ...+. ..+.++|+-
T Consensus       195 ~~~s~~~~l~~~AR~  209 (214)
T PF09986_consen  195 KKASKEPKLKDMARD  209 (214)
T ss_pred             CCCCCcHHHHHHHHH
Confidence            44332 356666553

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.33  E-value=23  Score=39.28  Aligned_cols=108  Identities=20%  Similarity=0.114  Sum_probs=83.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCC----hHHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFG----DEEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-------~~~----~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (557)
                      +..+.-.|......+..++|.+++.+|++......       ..+    .+...-...++..++..++.|.+-+++|..|
T Consensus       301 ~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a  380 (608)
T PF10345_consen  301 ALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKA  380 (608)
T ss_pred             HHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHH
Confidence            34445557888888888899999999999876533       111    1233445566778888899999999999999


Q ss_pred             HHHHHHHHccC---C------CChHHHHHHHHHHHhcCCHHHHHHHHH
Q 008689          468 EKLCTKVLDLD---S------RNVKALYRRAQAYIQMADLDLAEFDIK  506 (557)
Q Consensus       468 ~~~~~~al~~~---p------~~~ka~~~~g~a~~~lg~~~~A~~~~~  506 (557)
                      ......+....   |      -.+..+|-.|..+...|+.+.|+..|.
T Consensus       381 ~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~  428 (608)
T PF10345_consen  381 TQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ  428 (608)
T ss_pred             HHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence            99988876543   2      247789999999999999999999998

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=86.08  E-value=17  Score=40.29  Aligned_cols=114  Identities=17%  Similarity=0.132  Sum_probs=83.1

Q ss_pred             HHhhhHHHHHHHH-HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          398 AAGKKKEQGNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       398 ~a~~~k~~G~~~~-~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      .|......|..++ ...+++.|..+..+|+.++.. ...        ..++-.+.+-++.+|.+.+... |+..|+++++
T Consensus        58 ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~--------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~  127 (608)
T PF10345_consen   58 EARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL--------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIE  127 (608)
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch--------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHH
Confidence            4667778888888 588999999999999998876 322        2344555556688888888777 9999999988


Q ss_pred             cCCC----ChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhC--CCCHHHHHH
Q 008689          477 LDSR----NVKALYRRAQAYIQ--MADLDLAEFDIKKALEID--PDNRDVKLE  521 (557)
Q Consensus       477 ~~p~----~~ka~~~~g~a~~~--lg~~~~A~~~~~~al~l~--p~n~~~~~~  521 (557)
                      .-.+    .+.-.||.-++...  .+++..|++.++....+.  ..++.+...
T Consensus       128 ~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~  180 (608)
T PF10345_consen  128 DSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL  180 (608)
T ss_pred             HHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence            6544    45566666544333  369999999999988876  455544443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>smart00745 MIT Microtubule Interacting and Trafficking molecule domain

Probab=85.64  E-value=9.3  Score=29.23  Aligned_cols=36  Identities=25%  Similarity=0.341  Sum_probs=31.2

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ...|..+..+|..+=+.|+|++|+.+|.+|++.+..
T Consensus         5 ~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~   40 (77)
T smart00745        5 LSKAKELISKALKADEAGDYEEALELYKKAIEYLLE   40 (77)
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            456777888899999999999999999999998764

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=85.56  E-value=5.3  Score=46.46  Aligned_cols=109  Identities=17%  Similarity=0.095  Sum_probs=84.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      +.+.+++..+..+++.+++++|+..-.+|.-+.......+..+       ....|.|++...+..++...|+..+.+++.
T Consensus       971 ~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~-------t~~~y~nlal~~f~~~~~~~al~~~~ra~~ 1043 (1236)
T KOG1839|consen  971 EVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPN-------TKLAYGNLALYEFAVKNLSGALKSLNRALK 1043 (1236)
T ss_pred             hHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHH-------HHHHhhHHHHHHHhccCccchhhhHHHHHH
Confidence            4467788889999999999999998888886655433322111       233488999999999999999999999876


Q ss_pred             c--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       477 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      +        .|.-.-..-+.++.+..+++++.|+..++.|++++
T Consensus      1044 l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~ 1087 (1236)
T KOG1839|consen 1044 LKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKN 1087 (1236)
T ss_pred             hhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence            4        34445556788888999999999999999999864

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=85.34  E-value=1.4  Score=28.82  Aligned_cols=29  Identities=17%  Similarity=0.148  Sum_probs=26.3

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +|..||.+-+..++|.+|+.++.++|++.
T Consensus         3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    3 VYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            57889999999999999999999999864

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.15  E-value=8.3  Score=36.00  Aligned_cols=74  Identities=14%  Similarity=0.037  Sum_probs=62.0

Q ss_pred             HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      .-.++.+...+|+.....-++-+|.+.-.-.-+-+.|+-.|+|++|..-++-+-.++|+...-...++.+....
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~e   82 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCE   82 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHH
Confidence            34567888999999999999999999888888889999999999999999999999999875555555543333

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=84.11  E-value=35  Score=37.10  Aligned_cols=123  Identities=15%  Similarity=0.128  Sum_probs=86.3

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      ....|..|-..++.+.|...|.+|....-.  ..         .....++++-|..-++..+++.|++...+|+.. |.+
T Consensus       390 w~~faklYe~~~~l~~aRvifeka~~V~y~--~v---------~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~  457 (835)
T KOG2047|consen  390 WVEFAKLYENNGDLDDARVIFEKATKVPYK--TV---------EDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTN  457 (835)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHhhcCCcc--ch---------HHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCc
Confidence            445667777788888888888888764211  11         124556888888889999999999999888765 222


Q ss_pred             -------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          482 -------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       482 -------------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                                         .+.|-..+.....+|-++.....|++.+.|.-..+.+..+++...+..+-.++.-
T Consensus       458 ~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesF  531 (835)
T KOG2047|consen  458 PELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESF  531 (835)
T ss_pred             hhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHH
Confidence                               3444455666667788888888888888888888877777777655554444433

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=83.70  E-value=56  Score=33.82  Aligned_cols=113  Identities=14%  Similarity=0.041  Sum_probs=72.4

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHH------HH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK------QA  467 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~------~A  467 (557)
                      ..+-.+.-+.+.|..++++++|..|+-+...|=+.+....+.    .-+.-.-...+.+.+-+||+.+++..      .-
T Consensus       158 kAlmmglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~k----lLe~VDNyallnLDIVWCYfrLknitcL~DAe~R  233 (568)
T KOG2561|consen  158 KALMMGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSK----LLELVDNYALLNLDIVWCYFRLKNITCLPDAEVR  233 (568)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHH----HHHhhcchhhhhcchhheehhhcccccCChHHHH
Confidence            345667889999999999999999999998887765433211    01111112233455678999987632      22


Q ss_pred             HHHHHHHHcc------------C-CCC-hHHHHH-----HHHHHHhcCCHHHHHHHHHHHHH
Q 008689          468 EKLCTKVLDL------------D-SRN-VKALYR-----RAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       468 ~~~~~~al~~------------~-p~~-~ka~~~-----~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      +..|++.+..            . +.. -+|+|-     .|...++.|+-++|.++|+.|.+
T Consensus       234 L~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  234 LVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             HHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3333333321            1 111 345553     48999999999999999998864

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=83.07  E-value=19  Score=36.90  Aligned_cols=89  Identities=17%  Similarity=0.117  Sum_probs=67.3

Q ss_pred             HHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH---
Q 008689          458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY---  532 (557)
Q Consensus       458 ~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~--~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~---  532 (557)
                      ..++..+++-+.+...+|..+|+..-+|+.|..++.+...  +..=++.+++++++||.|-..+..-+-+....+..   
T Consensus        85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~  164 (421)
T KOG0529|consen   85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL  164 (421)
T ss_pred             HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence            3445567888899999999999999999999999998764  68888999999999999976666555555555444   


Q ss_pred             HHHHHHHHHHHhhh
Q 008689          533 NKKEAKFYGNMFAK  546 (557)
Q Consensus       533 ~~~~~~~~~~mf~~  546 (557)
                      ...+-....+|...
T Consensus       165 ~~~El~ftt~~I~~  178 (421)
T KOG0529|consen  165 EKEELEFTTKLIND  178 (421)
T ss_pred             chhHHHHHHHHHhc
Confidence            45555555555544

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=82.83  E-value=8.1  Score=39.48  Aligned_cols=78  Identities=18%  Similarity=0.301  Sum_probs=53.6

Q ss_pred             hCHHHHHHHHHHHHccCC-C-----C---h--HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          462 KDYKQAEKLCTKVLDLDS-R-----N---V--KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       462 ~~~~~A~~~~~~al~~~p-~-----~---~--ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      ++|..|++.|++.-.+.. .     +   +  -.--.+..||+.+++-+.|+....+.+.++|...--.-..+.|.+++.
T Consensus       197 ~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~frnHLrqAavfR~Le  276 (569)
T PF15015_consen  197 GRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYFRNHLRQAAVFRRLE  276 (569)
T ss_pred             HHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchhhHHHHHHHHHHHHH
Confidence            455666666666544332 1     1   1  112267899999999999999999999999998544445555778888


Q ss_pred             HHHHHHHHH
Q 008689          531 EYNKKEAKF  539 (557)
Q Consensus       531 ~~~~~~~~~  539 (557)
                      ++.+.-+..
T Consensus       277 Ry~eAarSa  285 (569)
T PF15015_consen  277 RYSEAARSA  285 (569)
T ss_pred             HHHHHHHHH
Confidence            777665543

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=82.82  E-value=28  Score=34.28  Aligned_cols=97  Identities=26%  Similarity=0.106  Sum_probs=70.8

Q ss_pred             hhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----h--CHHHHHH
Q 008689          401 KKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----K--DYKQAEK  469 (557)
Q Consensus       401 ~~k~~G~~~~~----~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~--~~~~A~~  469 (557)
                      .....|..++.    ..++.+|...|.+|.+.-....              ..+.++++.+|..-     -  ....|+.
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a--------------~~~~~~l~~~~~~g~~~~~~~~~~~~A~~  176 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA--------------ALAMYRLGLAYLSGLQALAVAYDDKKALY  176 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH--------------HHHHHHHHHHHHcChhhhcccHHHHhHHH
Confidence            45567777766    4589999999999998643221              22245666666653     1  2347999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCC
Q 008689          470 LCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDP  513 (557)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p  513 (557)
                      .+.++-...  +..+.+++|.+|..    ..++.+|..+|++|-+...
T Consensus       177 ~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         177 LYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            999987765  88999999988865    3488999999999998876

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.74  E-value=3.5  Score=40.31  Aligned_cols=62  Identities=15%  Similarity=0.033  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh
Q 008689          418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ  494 (557)
Q Consensus       418 A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~  494 (557)
                      |.++|.+|+.++|.....               |+.+|..+...++.-.|+-+|-+++........|.-++...+.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p---------------~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNP---------------YNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHH---------------HHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCc---------------ccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            778999999999987654               88999999999999999999999988766667788888777777

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=82.68  E-value=4.2  Score=39.76  Aligned_cols=62  Identities=19%  Similarity=0.075  Sum_probs=51.6

Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      |+.+|.+|+.+.|.+-..|..+|..+...++.-.|+-+|-+++...--.+.+...|..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            68899999999999999999999999999999999999999997765557777777776555

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=82.63  E-value=26  Score=35.24  Aligned_cols=85  Identities=9%  Similarity=0.147  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-HHHH-HHHHHHHHH
Q 008689          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK-MKEY-NKKEAKFYG  541 (557)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~-~~~~-~~~~~~~~~  541 (557)
                      .+..+..+++||+.+|++.+.+..+=.+..++.+-++..+-+++++..+|++..++..+-...+. .... -..-+..|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            56677888889999999999999988899999999999999999999999998777665443322 2211 223345666


Q ss_pred             HHhhhcc
Q 008689          542 NMFAKMN  548 (557)
Q Consensus       542 ~mf~~~~  548 (557)
                      +.++.+.
T Consensus       127 ~~l~~L~  133 (321)
T PF08424_consen  127 KCLRALS  133 (321)
T ss_pred             HHHHHHH
Confidence            6666654

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=82.27  E-value=5.7  Score=40.37  Aligned_cols=68  Identities=22%  Similarity=0.093  Sum_probs=55.3

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccC----CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLD----SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~----p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      .+.+-|-.+|+..+.|+.|-+...++---+    ..++..+|..|.+.+-+.+|..|.++|.+|+...|...
T Consensus       210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~  281 (493)
T KOG2581|consen  210 VLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHA  281 (493)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchh
Confidence            334445678999999999999888875322    23477788999999999999999999999999999854

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=81.53  E-value=9.1  Score=42.48  Aligned_cols=104  Identities=15%  Similarity=0.052  Sum_probs=65.8

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhc-----CCCChHH--HHHHH-H-HHHHHHhhHHHHHHhhhCHHHHHHHHHHH---
Q 008689          407 NTLFKAGKYARASKRYEKAVKYIEYD-----TSFGDEE--KKQAK-A-LKVACNLNNAACKLKLKDYKQAEKLCTKV---  474 (557)
Q Consensus       407 ~~~~~~~~y~~A~~~y~~Al~~~~~~-----~~~~~~~--~~~~~-~-~~~~~~~nla~~~~k~~~~~~A~~~~~~a---  474 (557)
                      ....+.|..++|...|+++-+++--+     ...+.+-  ..+.+ . ..-..|+|.|...-..++.+.|+++|+++   
T Consensus       808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h  887 (1416)
T KOG3617|consen  808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH  887 (1416)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence            34456677888888888877653211     1111111  11111 1 13344778888888888899999999875   


Q ss_pred             -------HccCCCC----------hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          475 -------LDLDSRN----------VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       475 -------l~~~p~~----------~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                             |.-+|..          .+.|-+.|+-+...|+.+.|+..|..|-.
T Consensus       888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence                   2233432          34455668888889999999999988764

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=81.36  E-value=21  Score=29.58  Aligned_cols=63  Identities=13%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHccCCCChH---HHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCH
Q 008689          454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVK---ALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~~k---a~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~p~n~  516 (557)
                      +|.-++..|++-+|++..+..+..++++..   .++..|..+..+..           +-.|+++|.++..+.|..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A   78 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA   78 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH
Confidence            577889999999999999999998877764   45556777766653           2478999999999999973

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=81.28  E-value=14  Score=31.73  Aligned_cols=61  Identities=20%  Similarity=0.119  Sum_probs=38.8

Q ss_pred             HhhHHHHHHhhhCHHHHHH-HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          451 NLNNAACKLKLKDYKQAEK-LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~-~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      |.++|.-++-...-+..++ .++.....+..++..++.+|.||.++|+..+|-+.+++|-+-
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek  149 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEK  149 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            5666665554444333333 344444455678999999999999999999999999988654

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.26  E-value=15  Score=32.13  Aligned_cols=79  Identities=11%  Similarity=-0.061  Sum_probs=56.5

Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      .++..+-+...+..++.......--+.|++...-.--|..|...|+|.+|+..|+....-.+..+-.+..+..|...+.
T Consensus        14 i~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~   92 (153)
T TIGR02561        14 IEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKG   92 (153)
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence            3444555557777777777777666778887777778888888888888888888777766666666677776655554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=81.26  E-value=13  Score=38.80  Aligned_cols=99  Identities=16%  Similarity=0.070  Sum_probs=73.1

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHH
Q 008689          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL  485 (557)
Q Consensus       406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~  485 (557)
                      -...+..|+...|-+....+++-.+.++..               ..-++..+..+|.|+.|..+..-+-..-..-.+++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~---------------i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~  360 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVL---------------IQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTL  360 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchh---------------hHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHH
Confidence            345567888888888888888877766643               33467788888999998888877766555666777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689          486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       486 ~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~  519 (557)
                      --+-..+.+|+++++|...-...|.-+-+++++.
T Consensus       361 ~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~  394 (831)
T PRK15180        361 RCRLRSLHGLARWREALSTAEMMLSNEIEDEEVL  394 (831)
T ss_pred             HHHHHhhhchhhHHHHHHHHHHHhccccCChhhe
Confidence            7777788888899888888777776665555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=80.92  E-value=24  Score=35.92  Aligned_cols=105  Identities=21%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (557)
Q Consensus       410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g  489 (557)
                      ...|+|+.|++..........-       +....+..+..++...|...+. -+...|..+..+++++.|+.+-+-.--+
T Consensus       199 ~~~gdWd~AlkLvd~~~~~~vi-------e~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AA  270 (531)
T COG3898         199 CAAGDWDGALKLVDAQRAAKVI-------EKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAA  270 (531)
T ss_pred             HhcCChHHHHHHHHHHHHHHhh-------chhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHH
Confidence            4455555555555444332211       1122334455555544444333 3589999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689          490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (557)
Q Consensus       490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~  523 (557)
                      .+|...|+..++-..++.+-+.+|.- ++...+.
T Consensus       271 ralf~d~~~rKg~~ilE~aWK~ePHP-~ia~lY~  303 (531)
T COG3898         271 RALFRDGNLRKGSKILETAWKAEPHP-DIALLYV  303 (531)
T ss_pred             HHHHhccchhhhhhHHHHHHhcCCCh-HHHHHHH
Confidence            99999999999999999999998853 3444443

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.86  E-value=2.1  Score=25.17  Aligned_cols=23  Identities=30%  Similarity=0.254  Sum_probs=20.5

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCT  472 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~  472 (557)
                      +++++|..+..+|++++|+..++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            46799999999999999998875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.57  E-value=16  Score=35.20  Aligned_cols=85  Identities=16%  Similarity=0.079  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC--CC----ChHHHHHH
Q 008689          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--SR----NVKALYRR  488 (557)
Q Consensus       415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--p~----~~ka~~~~  488 (557)
                      -...+..+.+|+..+.....         ..+...+...+|.-|++.|+|++|+..++.++..-  ..    ....+.++
T Consensus       154 s~~iI~lL~~A~~~f~~~~~---------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l  224 (247)
T PF11817_consen  154 SKLIIELLEKAYEQFKKYGQ---------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRL  224 (247)
T ss_pred             HHHHHHHHHHHHHHHHHhcc---------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            34556677777766554332         24455567789999999999999999999996532  11    24567788


Q ss_pred             HHHHHhcCCHHHHHHHHHHH
Q 008689          489 AQAYIQMADLDLAEFDIKKA  508 (557)
Q Consensus       489 g~a~~~lg~~~~A~~~~~~a  508 (557)
                      ..|+..+|+.+..+...-+.
T Consensus       225 ~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  225 LECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHhCCHHHHHHHHHHH
Confidence            89999999988877665443

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=80.48  E-value=9.3  Score=33.31  Aligned_cols=44  Identities=27%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC
Q 008689          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA  496 (557)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg  496 (557)
                      .+|...+..++|..|++.++.++..+|+|..|..-++.+|.+++
T Consensus        75 ~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   75 ERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            44444455555555555555555555555555555555554444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=80.20  E-value=43  Score=29.83  Aligned_cols=112  Identities=14%  Similarity=0.086  Sum_probs=74.9

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh-cCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY-DTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~-~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      .+..+.+......+.++...+...+. |++.+.. ....               -.--|..++..++|.+|+..++.+..
T Consensus         9 iv~gLie~~~~al~~~~~~D~e~lL~-ALrvLRP~~~e~---------------~~~~~~l~i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen    9 IVGGLIEVLSVALRLGDPDDAEALLD-ALRVLRPEFPEL---------------DLFDGWLHIVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHHHHHHHHHHHHccCChHHHHHHHH-HHHHhCCCchHH---------------HHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            35556677777777888888776664 5555433 2222               33467889999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      -.|..+-+---++.|+..+++.+= +.+-..+++-.+ +.+.....+.+..
T Consensus        73 ~~~~~p~~kALlA~CL~~~~D~~W-r~~A~evle~~~-d~~a~~Lv~~Ll~  121 (160)
T PF09613_consen   73 RAPGFPYAKALLALCLYALGDPSW-RRYADEVLESGA-DPDARALVRALLA  121 (160)
T ss_pred             cCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence            889887666677888888887631 112233444443 5555666555533

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	557
3jym_A	377	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-148
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		1e-145
3jxv_A	356	Crystal Structure Of The 3 Fkbp Domains Of Wheat Fk		2e-30
1kt1_A	457	Structure Of The Large Fkbp-Like Protein, Fkbp51, I		7e-55
1kt0_A	457	Structure Of The Large Fkbp-like Protein, Fkbp51, I		2e-54
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		1e-51
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		2e-49
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		5e-34
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		2e-23
3o5d_A	264	Crystal Structure Of A Fragment Of Fkbp51 Comprisin		1e-12
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		1e-32
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		2e-26
1q1c_A	280	Crystal Structure Of N(1-260) Of Human Fkbp52 Lengt		8e-13
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		7e-29
2lgo_A	130	Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prol		3e-09
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		6e-28
1r9h_A	135	Structural Genomics Of C.Elegans: Fkbp-Type Peptidy		2e-12
2if4_A	338	Crystal Structure Of A Multi-Domain Immunophilin Fr		1e-27
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		5e-27
1rot_A	149	Structure Of Fkbp59-I, The N-Terminal Domain Of A 5		4e-13
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		8e-27
1n1a_A	140	Crystal Structure Of The N-Terminal Domain Of Human		3e-13
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		8e-27
4drj_A	144	O-crystal Structure Of The Ppiase Domain Of Fkbp52,		2e-13
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		8e-26
3o5e_A	144	Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144		1e-12
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		1e-25
3o5g_A	128	Fk1 Domain Of Fkbp51, Crystal Form I Length = 128		1e-12
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		1e-25
4drh_A	144	Co-crystal Structure Of The Ppiase Domain Of Fkbp51		1e-12
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		1e-25
3o5l_A	128	Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Le		1e-12
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		6e-25
3uqi_A	108	Crystallographic Structure Of Fkbp12 From Aedes Aeg		6e-09
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		1e-24
1yat_A	113	Improved Calcineurin Inhibition By Yeast Fkbp12-Dru		2e-05
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		1e-24
1fkk_A	107	Atomic Structure Of Fkbp12, An Immunophilin Binding		3e-09
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		2e-24
4dz3_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-06
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-24
3uf8_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-24
3uqa_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		9e-07
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-24
3vaw_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-06
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-24
4ggq_C	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		4e-06
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		4e-24
3h9r_B	109	Crystal Structure Of The Kinase Domain Of Type I Ac		2e-08
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		5e-24
2fap_A	107	The Structure Of The Immunophilin-Immunosuppressant		2e-08
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		5e-24
1fkb_A	107	Atomic Structure Of The Rapamycin Human Immunophili		2e-08
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		6e-24
1tco_C	107	Ternary Complex Of A Calcineurin A Fragment, Calcin		1e-08
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		6e-24
2ke0_A	117	Solution Structure Of Peptidyl-Prolyl Cis-Trans Iso		1e-06
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		6e-24
2ppp_A	107	Crystal Structure Of E60q Mutant Of Fkbp12 Length =		2e-08
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		8e-24
2ppo_A	107	Crystal Structure Of E60a Mutant Of Fkbp12 Length =		3e-08
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		8e-24
2y78_A	133	Crystal Structure Of Bpss1823, A Mip-Like Chaperone		7e-06
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		2e-23
1bkf_A	107	Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX		1e-08
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-23
3uqb_A	209	Crystal Structure Of A Smt Fusion Peptidyl-Prolyl C		3e-06
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		3e-23
1eym_A	107	Fk506 Binding Protein Mutant, Homodimeric Complex L		9e-08
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		4e-23
1bl4_A	107	Fkbp Mutant F36v Complexed With Remodeled Synthetic		1e-07
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		7e-23
2dg4_A	107	Fk506-Binding Protein Mutant Wf59 Complexed With Ra		1e-08
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		1e-22
2dg9_A	107	Fk506-Binding Protein Mutant Wl59 Complexed With Ra		4e-09
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		3e-22
1c9h_A	107	Crystal Structure Of Fkbp12.6 In Complex With Rapam		2e-08
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		4e-22
2pbc_A	102	Fk506-Binding Protein 2 Length = 102		9e-05
1ihg_A	370	Bovine Cyclophilin 40, Monoclinic Form Length = 370		2e-21
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		6e-21
4dz2_A	113	Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Is		1e-04
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		7e-21
2ki3_A	126	Structural And Biochemical Characterization Of Fk50		2e-09
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		6e-20
2vn1_A	129	Crystal Structure Of The Fk506-Binding Domain Of Pl		4e-10
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		6e-20
2ofn_A	135	Solution Structure Of Fk506-Binding Domain (Fkbd)of		4e-10
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		7e-18
1pbk_A	116	Homologous Domain Of Human Fkbp25 Length = 116		3e-13
1q6h_A	224	Crystal Structure Of A Truncated Form Of Fkpa From		3e-17
1q6u_A	245	Crystal Structure Of Fkpa From Escherichia Coli Len		3e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		7e-17
3kz7_A	119	C-Terminal Domain Of Murine Fkbp25 Rapamycin Comple		1e-12
1jvw_A	167	Trypanosoma Cruzi Macrophage Infectivity Potentiato		8e-16
1u79_A	129	Crystal Structure Of Atfkbp13 Length = 129		6e-14
2fbn_A	198	Plasmodium Falciparum Putative Fk506-Binding Protei		1e-13
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		1e-11
4dip_A	125	Crystal Structure Of Human Peptidyl-Prolyl Cis-Tran		1e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		2e-11
3b7x_A	134	Crystal Structure Of Human Fk506-Binding Protein 6		6e-06
1fd9_A	213	Crystal Structure Of The Macrophage Infectivity Pot		2e-10
2uz5_A	137	Solution Structure Of The Fkbp-Domain Of Legionella		5e-10
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		4e-09
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		3e-07
2f2d_A	121	Solution Structure Of The Fk506-Binding Domain Of H		5e-04
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		3e-07
2awg_A	118	Structure Of The Ppiase Domain Of The Human Fk506-B		5e-04
3oe2_A	219	1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Tran		3e-07
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		1e-06
4aif_A	144	Aip Tpr Domain In Complex With Human Hsp90 Peptide		1e-06
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-06
4apo_A	165	Aip Tpr Domain In Complex With Human Tomm20 Peptide		2e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		2e-06
2d9f_A	135	Solution Structure Of Ruh-047, An Fkbp Domain From		4e-04
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		3e-06
2jwx_A	157	Solution Structure Of The N-Terminal Domain Of Huma		4e-04
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		1e-05
2f4e_A	180	N-Terminal Domain Of Fkbp42 From Arabidopsis Thalia		6e-04
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		2e-05
1na3_A	91	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
3rkv_A	162	C-Terminal Domain Of Protein C56c10.10, A Putative		1e-04
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		2e-04
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		2e-04
4dt4_A	169	Crystal Structure Of The Ppiase-Chaperone Slpa With		3e-04
1wao_1	477	Pp5 Structure Length = 477		3e-04
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		4e-04

>pdb|3JYM|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 377

Iteration: 1
 Score =  523 bits (1347), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/363 (74%), Positives = 293/363 (80%), Gaps = 2/363 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 17  KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 76
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 77  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 136
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 137 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 196
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 197 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 256
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 257 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 315
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+KE
Sbjct: 316 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKDKE 374
Query: 387 SWD 389
           SWD
Sbjct: 375 SWD 377

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  512 bits (1319), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 264/358 (73%), Positives = 288/358 (80%), Gaps = 2/358 (0%)
Query: 27  KVGEEKEIGNQXXXXXXXXXXXXWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG Q            WDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60
Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120
Query: 147 XXXXXXXXXXXXXXXXXXXWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
                              WENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180
Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240
Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH E+E  FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGHDEQEP-FEFKTDEEA 299
Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>pdb|3JXV|A Chain A, Crystal Structure Of The 3 Fkbp Domains Of Wheat Fkbp73 Length = 356

Iteration: 1
 Score =  130 bits (327), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 85/230 (36%), Positives = 121/230 (52%), Gaps = 17/230 (7%)
Query: 166 WENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKV 221
           W+ P+  DEV V+Y   L DG     +    D  +F +  G       + +KTMKKGE  
Sbjct: 24  WDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKGENA 83
Query: 222 LLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGD 281
           L  + P+  +GE     SG+   +P NATLQ  +EL+SW +V +I  D  + KKILKEGD
Sbjct: 84  LFTIPPELAYGE-----SGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGD 138
Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
            +E P +   V VK   +L+DGTV  K       +  EF   +  +   L +AV TMKK 
Sbjct: 139 KWENPKDPDEVFVKYEARLEDGTVVSKS------EGVEFTVKDGHLCPALAKAVKTMKKG 192
Query: 342 EVALLTIAPEYAFG--SAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           E  LL + P+Y FG     +  E   VPPN+++  ++ELVS++   E  D
Sbjct: 193 EKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGD 242

>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  211 bits (538), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 209/386 (54%), Gaps = 19/386 (4%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y  +L +G     +    +   F++  G         V TMKKGE   
Sbjct: 45  ETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     A+G+   +P NATL   +EL+ +K   ++ +D  +I++  + G+G
Sbjct: 105 LLCKPEYAYG-----ATGSLPKIPSNATLFFEVELLDFKG-EDLLEDGGIIRRTKRRGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G VF  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           ++Y +A + C K L LDS N K LYRR +A + M + + A+ D +K LE++P N+  +L+
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAKM 547
               ++K KE+N+++ + Y NMF K 
Sbjct: 391 IFMCQKKAKEHNERDRRTYANMFKKF 416

>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved In Steroid Receptor Complexes Length = 457

Iteration: 1
 Score =  210 bits (535), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 19/386 (4%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +    +   F++  G         V TMK+GE   
Sbjct: 45  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICH 104
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 105 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 158
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 159 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 212
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTXXXXXXXXX 401
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+T         
Sbjct: 213 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMDTKEKLEQAAI 270
Query: 402 XXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
              +G   FK GKY +A  +Y K V ++E +    ++E K +++  +A  LN A C LKL
Sbjct: 271 VKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKL 330
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           ++Y +A + C K L LDS N K LYRR +A + M + + A+ D +K LE++P N+  +L+
Sbjct: 331 REYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQ 390
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAKM 547
               ++K KE+N+++ + Y NMF K 
Sbjct: 391 ISMCQKKAKEHNERDRRIYANMFKKF 416

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score =  200 bits (509), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 104/287 (36%), Positives = 174/287 (60%), Gaps = 13/287 (4%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L+RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFEL 248
Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score =  193 bits (490), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/287 (35%), Positives = 171/287 (59%), Gaps = 13/287 (4%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70
Query: 324 EEQVID---GLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E + +D   GL+RA+   +K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRXEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKS 128
Query: 381 FEKEKESWDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+ N+            +G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEXNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188
Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248
Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  142 bits (358), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 88/218 (40%), Positives = 118/218 (54%), Gaps = 10/218 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVXXXXXXXXXXXXXXXXXXXWENPK 170
               PE AYG +GS P IP NATL F++ELL +                      + NP 
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPN 167
Query: 171 DLDEVLVNYEARLEDGMVVGKADGVEFTVKDG--HFCPT-LAKAVKTMKKGEKVLLAVKP 227
           +   V ++ E R    M       V FTV +G  H  P  + KA++ M++ E+ +L + P
Sbjct: 168 EGATVEIHLEGRCGGRMF--DCRDVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGP 225
Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +YGFGE GK   G    + PNA L   + L S++   E
Sbjct: 226 RYGFGEAGKPKFG----IEPNAELIYEVTLKSFEKAKE 259

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/230 (32%), Positives = 123/230 (53%), Gaps = 19/230 (8%)
Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D+V V+Y+ +L +G     +    +   F++  G         V TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDG 282
           L  KP+Y +G     ++G+   +P NATL   +EL+ +K   ++ +D  +I++  ++G+G
Sbjct: 109 LLCKPEYAYG-----SAGSLPKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEG 162
Query: 283 FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID-GLDRAVITMKKN 341
           +  PNEGA V++ L G+   G +F  +     +  F     E+  I  G+D+A+  M++ 
Sbjct: 163 YSNPNEGATVEIHLEGRC-GGRMFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQRE 216
Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK KESW+M+
Sbjct: 217 EQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEKAKESWEMD 264

>pdb|3O5D|A Chain A, Crystal Structure Of A Fragment Of Fkbp51 Comprising The Fk1 And Fk2 Domains Length = 264

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  137 bits (346), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 87/219 (39%), Positives = 112/219 (51%), Gaps = 10/219 (4%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV-XXXXXXXXXXXXXXXXXXXWENP 169
            T  PE AYG +GSPP IPPNATL F+VEL  +                       +  P
Sbjct: 125 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKP 184
Query: 170 KDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVK 226
            +   V V  E   +D +   +   + F + +G        L +A++ M+KGE  ++ +K
Sbjct: 185 NEGAIVEVALEGYYKDKLFDQRE--LRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLK 242
Query: 227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           P Y FG  GK        +PPNA L+  L L S++   E
Sbjct: 243 PSYAFGSVGKEKF----QIPPNAELKYELHLKSFEKAKE 277

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score =  117 bits (293), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 80/232 (34%), Positives = 126/232 (54%), Gaps = 25/232 (10%)
Query: 167 ENPKDLDEVLVNYEARLEDGM----VVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
           E P   D V V+Y   L DG      + + D   F +  G        A+ TMK GE   
Sbjct: 65  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 124
Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD--DKKVIKKILKEG 280
           +  KP+Y +G     ++G+   +PPNATL   +EL  +K   ++T+  D  +I++I   G
Sbjct: 125 ITCKPEYAYG-----SAGSPPKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRG 178
Query: 281 DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVIT 337
           +G+ +PNEGA+V+V L G  +D  +F       +++   F+  E + +D   GL+RA+  
Sbjct: 179 EGYAKPNEGAIVEVALEGYYKD-KLF-------DQRELRFEIGEGENLDLPYGLERAIQR 230
Query: 338 MKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
           M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L SFEK KESW+
Sbjct: 231 MEKGEHSIVYLKPSYAFGSV--GKEKFQIPPNAELKYELHLKSFEKAKESWE 280

>pdb|1Q1C|A Chain A, Crystal Structure Of N(1-260) Of Human Fkbp52 Length = 280

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 50  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 107
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 108 KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 160

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score =  125 bits (314), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/90 (64%), Positives = 66/90 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD G+ TM  GE A+FT
Sbjct: 40  PQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT 99
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 100 IPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>pdb|2LGO|A Chain A, Solution Nmr Structure Of A Fkbp-Type Peptidyl-Prolyl Cis-Trans Isomerase From Giardia Lamblia, Seattle Structural Genomics Center For Infectious Disease Target Gilaa.00840.A Length = 130

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 54/107 (50%), Gaps = 5/107 (4%)
Query: 274 KKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDR 333
           KK+L  GDG  +P  G  V V   G+  DG  F         + F+F     +VI G D+
Sbjct: 28  KKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQF--DSSRSRGKPFQFTLGAGEVIKGWDQ 85
Query: 334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
            V TM   E AL TI  + A+G    +    V+PP +T+ +EVEL++
Sbjct: 86  GVATMTLGEKALFTIPYQLAYG---ERGYPPVIPPKATLVFEVELLA 129

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 56/93 (60%), Positives = 68/93 (73%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIKGWD+G+ TM KGE A FT
Sbjct: 30  PTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT 89
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           I  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 90  IRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 122

>pdb|1R9H|A Chain A, Structural Genomics Of C.Elegans: Fkbp-Type Peptidylprolyl Isomerase Length = 135

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 61/123 (49%), Gaps = 5/123 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 13  DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKF--DSSRDRGDQFSFNLGRGNVI 70
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESW 388
            G D  V TM K EVA  TI  +Y +G A S  +   +P  +T+ +EVEL  +  E  S 
Sbjct: 71  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPK---IPGGATLIFEVELFEWSAEDISP 127
Query: 389 DMN 391
           D +
Sbjct: 128 DRD 130

>pdb|2IF4|A Chain A, Crystal Structure Of A Multi-Domain Immunophilin From Arabidopsis Thaliana Length = 338

Iteration: 1
 Score =  121 bits (303), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 97/319 (30%), Positives = 155/319 (48%), Gaps = 19/319 (5%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP              + +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVD-----------SEAEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKES---WDMNTXXXXXXXXXXXXQGNTLFKAG 413
            E       VPP + + YEVE++ F++ KE     DM               GN+LFK  
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEE 193
Query: 414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV--ACNLNNAACKLKLKDYKQAEKLC 471
           K   A ++YE A+ Y+  D  F    K Q  AL V   C+LN AAC +KLK Y +A   C
Sbjct: 194 KLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHC 253
Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
             VL  + +N KAL+RR +A  ++  +D A  D +KA +  PD++ ++ E + L E+ K 
Sbjct: 254 NIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA 313
Query: 532 YNKKEAKFYGNMFAKMNTG 550
             +K+ + Y  +F   + G
Sbjct: 314 LYQKQKEMYKGIFKGKDEG 332

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score =  119 bits (297), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 65/93 (69%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI + TMK GE   
Sbjct: 44  ETPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAVATMKVGELCR 103
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 104 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 136

>pdb|1ROT|A Chain A, Structure Of Fkbp59-I, The N-Terminal Domain Of A 59 Kda Fk506-Binding Protein, Nmr, Minimized Average Structure Length = 149

Iteration: 1
 Score = 72.8 bits (177), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 29  DEGVLKVIKREGTGTETPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 86
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D AV TMK  E+  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 87  KAWDIAVATMKVGELCRITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 139

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 45  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 104
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 105 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 137

>pdb|1N1A|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Fkbp52 Length = 140

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 30  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 87
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 88  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 140

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score =  118 bits (296), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 64/93 (68%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK WDI I TMK GE   
Sbjct: 49  EMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 109 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 141

>pdb|4DRJ|A Chain A, O-crystal Structure Of The Ppiase Domain Of Fkbp52, Rapamycin And The Frb Fragment Of Mtor Length = 144

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/116 (41%), Positives = 64/116 (55%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 34  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKF--DSSLDRKDKFSFDLGKGEVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S  +   +PPN+T+ +EVEL  F+ E
Sbjct: 92  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK---IPPNATLVFEVELFEFKGE 144

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score =  115 bits (287), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|3O5E|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form Vi Length = 144

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5G|A Chain A, Fk1 Domain Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 49  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 108
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 109 LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 141

>pdb|4DRH|A Chain A, Co-crystal Structure Of The Ppiase Domain Of Fkbp51, Rapamycin And The Frb Fragment Of Mtor At Low Ph Length = 144

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 34  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 91
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 92  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 144

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 66/93 (70%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           +TP  GD+V VHY G L +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE   
Sbjct: 33  ETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICH 92
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
               PE AYG +GS P IP NATL F++ELL +
Sbjct: 93  LLCKPEYAYGSAGSLPKIPSNATLFFEIELLDF 125

>pdb|3O5L|A Chain A, Fk1 Domain Mutant A19t Of Fkbp51, Crystal Form I Length = 128

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/116 (40%), Positives = 63/116 (54%), Gaps = 5/116 (4%)
Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K + + G+G E P  G  V V   GKL +G  F    H   E  F F   + QVI
Sbjct: 18  DRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKF-DSSHDRNEP-FVFSLGKGQVI 75
Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+ E
Sbjct: 76  KAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFKGE 128

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score =  112 bits (280), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 59/89 (66%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTGTL DG  FDSSR R  PF+FT+G+G VI+GWD G+  M  G+ A   
Sbjct: 17  PKAGQVAVVHYTGTLADGKVFDSSRTRGKPFRFTVGRGEVIRGWDEGVAQMSVGQRAKLV 76
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
             P+ AYG  G P  IPPNATL FDVELL
Sbjct: 77  CSPDYAYGSRGHPGVIPPNATLTFDVELL 105

>pdb|3UQI|A Chain A, Crystallographic Structure Of Fkbp12 From Aedes Aegypti Length = 108

Iteration: 1
 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/106 (34%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L  GD    P  G V  V   G L DG VF         + F F     +VI G D  V 
Sbjct: 8   LAAGDEATYPKAGQVAVVHYTGTLADGKVF--DSSRTRGKPFRFTVGRGEVIRGWDEGVA 65
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A L  +P+YA+G   S+    V+PPN+T+ ++VEL+  E
Sbjct: 66  QMSVGQRAKLVCSPDYAYG---SRGHPGVIPPNATLTFDVELLRVE 108

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G VIKGWD+GI  +  GE A  T
Sbjct: 22  PKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT 81
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           IP   AYG  G P  IPPN+TL FDVELL
Sbjct: 82  IPGPYAYGPRGFPGLIPPNSTLVFDVELL 110

>pdb|1YAT|A Chain A, Improved Calcineurin Inhibition By Yeast Fkbp12-Drug Complexes. Crystallographic And Functional Analysis Length = 113

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 12/119 (10%)
Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +    I +I   GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGNVKIDRI-SPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSP-----FQC 54
Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                QVI G D  +  +   E A LTI   YA+G    +    ++PPNST+ ++VEL+
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYG---PRGFPGLIPPNSTLVFDVELL 110

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFVLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPPNATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPNATLIFDVELL 104

>pdb|1FKK|A Chain A, Atomic Structure Of Fkbp12, An Immunophilin Binding Protein Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/106 (32%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFVLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PPN+T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPNATLIFDVELLKLE 107

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score =  110 bits (275), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G+VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGHVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGARGAGGVIPPNATLVFEVELL 111

>pdb|4DZ3|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation M61h From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGHVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 111

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAAGVIPPNATLVFEVELL 207

>pdb|3UF8|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With A G95a Surface Mutation From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G   ++    V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYG---ARGAAGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  109 bits (273), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 61/86 (70%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF+F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQA|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation A54e From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/132 (32%), Positives = 60/132 (45%), Gaps = 8/132 (6%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVP 367
                +    FEF      VI G D  V  MK   V  LTI P+  +G+  +     V+P
Sbjct: 140 -DSSKDRNDPFEFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIP 195
Query: 368 PNSTVHYEVELV 379
           PN+T+ +EVEL+
Sbjct: 196 PNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3VAW|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation V3i From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|4GGQ|C Chain C, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Complexed With Cj40 Length = 209

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 111 LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 167
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 168 GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 207

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score =  109 bits (272), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 18  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 77
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 78  ISPDYAYGATGHPGIIPPHATLVFDVELL 106

>pdb|3H9R|B Chain B, Crystal Structure Of The Kinase Domain Of Type I Activin Receptor (Acvr1) In Complex With Fkbp12 And Dorsomorphin Length = 109

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 7   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEG 64
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 109

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2FAP|A Chain A, The Structure Of The Immunophilin-Immunosuppressant Fkbp12- (C16)-Ethoxy Rapamycin Complex Interacting With Huma Length = 107

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score =  109 bits (272), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1FKB|A Chain A, Atomic Structure Of The Rapamycin Human Immunophilin Fkbp- 12 Complex Length = 107

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 51/89 (57%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKAGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1TCO|C Chain C, Ternary Complex Of A Calcineurin A Fragment, Calcineurin B, Fkbp12 And The Immunosuppressant Drug Fk506 (tacrolimus) Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 55/106 (51%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKAGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 30  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 89
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 90  QLGYGARGAGGVIPPNATLVFEVELL 115

>pdb|2KE0|A Chain A, Solution Structure Of Peptidyl-Prolyl Cis-Trans Isomerase From Burkholderia Pseudomallei Length = 117

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/118 (32%), Positives = 55/118 (46%), Gaps = 6/118 (5%)
Query: 262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFK 321
           +++ +T +  +  + L EG G E    G  V V   G L DG  F      +    F F 
Sbjct: 4   SMTVVTTESGLKYEDLTEGSGAEA-RAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFV 60
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
                VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 61  LGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 115

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (271), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWQEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPP|A Chain A, Crystal Structure Of E60q Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWQEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 51/89 (57%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW  G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWAEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2PPO|A Chain A, Crystal Structure Of E60a Mutant Of Fkbp12 Length = 107

Iteration: 1
 Score = 56.6 bits (135), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 55/108 (50%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G    
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGWAEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score =  108 bits (270), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 46  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 105
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 106 QLGYGARGAGGVIPPNATLVFEVELL 131

>pdb|2Y78|A Chain A, Crystal Structure Of Bpss1823, A Mip-Like Chaperone From Burkholderia Pseudomallei Length = 133

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 47/103 (45%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 35  LTEGSGAE-ARAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 91
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+
Sbjct: 92  GMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVELL 131

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRD++ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDKNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGVPGIIPPHATLVFDVELL 104

>pdb|1BKF|A Chain A, Fk506 Binding Protein Fkbp Mutant R42kH87V COMPLEX WITH Immunosuppressant Fk506 Length = 107

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 56/106 (52%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P  G    V   G L+DG  F      ++ + F+F   +++VI G +  V 
Sbjct: 7   ISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDKNKPFKFMLGKQEVIRGWEEGVA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 65  QMSVGQRAKLTISPDYAYGATGVP---GIIPPHATLVFDVELLKLE 107

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/86 (59%), Positives = 59/86 (68%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +F SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 122 GQTVSVHYTGWLTDGQKFGSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 181
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 182 QLGYGARGAGGVIPPNATLVFEVELL 207

>pdb|3UQB|A Chain A, Crystal Structure Of A Smt Fusion Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation D44g From Burkholderia Pseudomallei Complexed With Fk506 Length = 209

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 62/133 (46%), Gaps = 10/133 (7%)
Query: 248 NATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFV 307
           N  ++   E +   TV  +T +  +  + L EG G E    G  V V   G L DG  F 
Sbjct: 84  NDIIEAHREQIGGSTV--VTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKF- 139
Query: 308 KKGHSEEEQ-LFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVV 366
             G S++    F F      VI G D  V  MK   V  LTI P+  +G+  +     V+
Sbjct: 140 --GSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVI 194
Query: 367 PPNSTVHYEVELV 379
           PPN+T+ +EVEL+
Sbjct: 195 PPNATLVFEVELL 207

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score =  106 bits (265), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKMDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1EYM|A Chain A, Fk506 Binding Protein Mutant, Homodimeric Complex Length = 107

Iteration: 1
 Score = 55.5 bits (132), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE--QLFEFKTDEEQVIDGLD 332
           + +  GDG   P  G    V   G L+DG    KK  S  +  + F+F   +++VI G +
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDG----KKMDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score =  106 bits (264), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG + DSSRDR+ PFKF LG+  VI+GW+ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKVDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|1BL4|A Chain A, Fkbp Mutant F36v Complexed With Remodeled Synthetic Ligand Length = 107

Iteration: 1
 Score = 55.1 bits (131), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/110 (31%), Positives = 58/110 (52%), Gaps = 9/110 (8%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE--QLFEFKTDEEQVIDGLD 332
           + +  GDG   P  G    V   G L+DG    KK  S  +  + F+F   +++VI G +
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDG----KKVDSSRDRNKPFKFMLGKQEVIRGWE 60
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  105 bits (262), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 62/89 (69%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G++ G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGFEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG4|A Chain A, Fk506-Binding Protein Mutant Wf59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 33/108 (30%), Positives = 56/108 (51%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI G +  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGFEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score =  104 bits (259), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/89 (56%), Positives = 61/89 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+G + G+  M  G+ A  T
Sbjct: 16  PKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGLEEGVAQMSVGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELL 141
           I P+ AYG +G P  IPP+ATL FDVELL
Sbjct: 76  ISPDYAYGATGHPGIIPPHATLVFDVELL 104

>pdb|2DG9|A Chain A, Fk506-Binding Protein Mutant Wl59 Complexed With Rapamycin Length = 107

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
           + +  GDG   P  G    V   G L+DG  F      +  + F+F   +++VI GL+  
Sbjct: 5   ETISPGDGRTFPKRGQTCVVHYTGMLEDGKKF--DSSRDRNKPFKFMLGKQEVIRGLEEG 62
Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 63  VAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score =  103 bits (257), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 62/91 (68%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+ G    VHYTG L +G +FDSSRDR+ PFKF +G+  VIKG++ G   M  G+ A  T
Sbjct: 16  PKKGQTCVVHYTGMLQNGKKFDSSRDRNKPFKFRIGKQEVIKGFEEGAAQMSLGQRAKLT 75
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLSW 143
             P++AYG +G P  IPPNATL FDVELL+ 
Sbjct: 76  CTPDVAYGATGHPGVIPPNATLIFDVELLNL 106

>pdb|1C9H|A Chain A, Crystal Structure Of Fkbp12.6 In Complex With Rapamycin Length = 107

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 5/106 (4%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +  GDG   P +G    V   G LQ+G  F      +  + F+F+  +++VI G +    
Sbjct: 7   ISPGDGRTFPKKGQTCVVHYTGMLQNGKKF--DSSRDRNKPFKFRIGKQEVIKGFEEGAA 64
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            M   + A LT  P+ A+G+        V+PPN+T+ ++VEL++ E
Sbjct: 65  QMSLGQRAKLTCTPDVAYGATGHP---GVIPPNATLIFDVELLNLE 107

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score =  103 bits (256), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/86 (58%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +GE     IP 
Sbjct: 9   GDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPS 68
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           EL YGE G+PP IP  ATL F+VELL
Sbjct: 69  ELGYGERGAPPKIPGGATLVFEVELL 94

>pdb|2PBC|A Chain A, Fk506-Binding Protein 2 Length = 102

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 5/102 (4%)
Query: 285 RPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA 344
           +  +G V+ +   GKL+DGT F       + Q F F     QVI G D+ ++ M + E  
Sbjct: 5   KSRKGDVLHMHYTGKLEDGTEF--DSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKR 62
Query: 345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            L I  E  +G   +  +   +P  +T+ +EVEL+  E+  E
Sbjct: 63  KLVIPSELGYGERGAPPK---IPGGATLVFEVELLKIERRTE 101

>pdb|1IHG|A Chain A, Bovine Cyclophilin 40, Monoclinic Form Length = 370

Iteration: 1
 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/141 (37%), Positives = 84/141 (59%), Gaps = 1/141 (0%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFG-DEEKKQAKALKVACNLNNAACKLKLKDY 464
           GNT FK+  +  A K+Y K ++Y+E   +   D +  + + + ++C LN  ACKLK+ D+
Sbjct: 230 GNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDW 289
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           + A   C + L++D  N KALYRRAQ +  + + D A  D+KKA EI P+++ ++ E   
Sbjct: 290 QGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLK 349
Query: 525 LKEKMKEYNKKEAKFYGNMFA 545
           +K+K+K    KE   Y  MFA
Sbjct: 350 VKQKIKAQKDKEKAAYAKMFA 370

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 99.0 bits (245), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 60/86 (69%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPP 115
           G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD G++ MK G     TIPP
Sbjct: 26  GQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPP 85
Query: 116 ELAYGESGSPPTIPPNATLQFDVELL 141
           +L YG  G+   IPPNATL F+VELL
Sbjct: 86  QLGYGAGGAGGVIPPNATLVFEVELL 111

>pdb|4DZ2|A Chain A, Crystal Structure Of A Peptidyl-Prolyl Cis-Trans Isomerase With Surface Mutation R92g From Burkholderia Pseudomallei Complexed With Fk506 Length = 113

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 36/103 (34%), Positives = 44/103 (42%), Gaps = 6/103 (5%)
Query: 277 LKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           L EG G E    G  V V   G L DG  F      +    F F      VI G D  V 
Sbjct: 15  LTEGSGAEA-RAGQTVSVHYTGWLTDGQKF--DSSKDRNDPFAFVLGGGMVIKGWDEGVQ 71
Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV 379
            MK   V  LTI P+       +     V+PPN+T+ +EVEL+
Sbjct: 72  GMKVGGVRRLTIPPQLG---YGAGGAGGVIPPNATLVFEVELL 111

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 98.6 bits (244), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 61/94 (64%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSSR+R+ PFKF LGQG VIKGWDI + +M K E  
Sbjct: 31  NAPKKGNEVTVHYVGKLESSGKVFDSSRERNVPFKFHLGQGEVIKGWDICVASMTKNEKC 90
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
              +  +  YGE G   +IP N+ L F++EL+S+
Sbjct: 91  SVRLDSKYGYGEEGCGESIPGNSVLIFEIELISF 124

>pdb|2KI3|A Chain A, Structural And Biochemical Characterization Of Fk506 Binding Domain From Plasmodium Vivax Length = 126

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 64/119 (53%), Gaps = 8/119 (6%)
Query: 266 ITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKT 322
           +T+D  V+K IL++G+G E   P +G  V V  +GKL+  G VF      E    F+F  
Sbjct: 11  LTEDGGVVKTILRKGEGGEENAPKKGNEVTVHYVGKLESSGKVF--DSSRERNVPFKFHL 68
Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            + +VI G D  V +M KNE   + +  +Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  GQGEVIKGWDICVASMTKNEKCSVRLDSKYGYGEEGCGES---IPGNSVLIFEIELISF 124

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2VN1|A Chain A, Crystal Structure Of The Fk506-Binding Domain Of Plasmodium Falciparum Fkbp35 In Complex With Fk506 Length = 129

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 60/94 (63%), Gaps = 1/94 (1%)
Query: 51  DTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA 109
           + P+ G+EV VHY G L   G  FDSS DR+ PFKF L QG VIKGWDI + +M+K E  
Sbjct: 32  NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNEKC 91
Query: 110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           +  I     YG+ G   +IP N+ L F++ELLS+
Sbjct: 92  LVRIESMYGYGDEGCGESIPGNSVLLFEIELLSF 125

>pdb|2OFN|A Chain A, Solution Structure Of Fk506-Binding Domain (Fkbd)of Fkbp35 From Plasmodium Falciparum Length = 135

Iteration: 1
 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 45/120 (37%), Positives = 65/120 (54%), Gaps = 8/120 (6%)
Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFK 321
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF      +    F+F 
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVF--DSSFDRNVPFKFH 68
Query: 322 TDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            ++ +VI G D  V +M+KNE  L+ I   Y +G     +    +P NS + +E+EL+SF
Sbjct: 69  LEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGES---IPGNSVLLFEIELLSF 125

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 89.0 bits (219), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 58/97 (59%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++       +  + P  F +G G VI+GWD  + TM K
Sbjct: 17  PKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 76
Query: 106 GENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPNA L F+VEL+
Sbjct: 77  GEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELV 113

>pdb|1PBK|A Chain A, Homologous Domain Of Human Fkbp25 Length = 116

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 62/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF           +  +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNAKLTFEVELVDID 116

>pdb|1Q6H|A Chain A, Crystal Structure Of A Truncated Form Of Fkpa From Escherichia Coli Length = 224

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|1Q6U|A Chain A, Crystal Structure Of Fkpa From Escherichia Coli Length = 245

Iteration: 1
 Score = 86.7 bits (213), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 60/91 (65%), Gaps = 3/91 (3%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW  G+K +KKG    
Sbjct: 134 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIK 191
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPPELAYG++G  P IPPN+TL FDVELL
Sbjct: 192 LVIPPELAYGKAGV-PGIPPNSTLVFDVELL 221

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 85.5 bits (210), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 47/97 (48%), Positives = 57/97 (58%), Gaps = 8/97 (8%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRST-------PFKFTLGQGNVIKGWDIGIKTMKK 105
           P+ GD V   YTGTL DGT FD++   S+       P  F +G G VI+GWD  + TM K
Sbjct: 20  PKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSK 79
Query: 106 GENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELL 141
           GE A   I PE AYG+ G P   IPPN  L F+VEL+
Sbjct: 80  GEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELV 116

>pdb|3KZ7|A Chain A, C-Terminal Domain Of Murine Fkbp25 Rapamycin Complex Length = 119

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTDEE 325
           K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK    
Sbjct: 5   KYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVG 64
Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G  +  Q  A +PPN+ + +EVELV  +
Sbjct: 65  KVIRGWDEALLTMSKGEKARLEIEPEWAYG--KKGQPDAKIPPNTKLIFEVELVDID 119

>pdb|1JVW|A Chain A, Trypanosoma Cruzi Macrophage Infectivity Potentiator (Tcmip) Length = 167

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 44/90 (48%), Positives = 57/90 (63%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW   ++ M++G+     
Sbjct: 53  PAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWTEALQLMREGDRWRLF 110
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP +LAYG +G    IPP + L+FDVEL+S
Sbjct: 111 IPYDLAYGVTGGGGMIPPYSPLEFDVELIS 140

>pdb|1U79|A Chain A, Crystal Structure Of Atfkbp13 Length = 129

Iteration: 1
 Score = 75.9 bits (185), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 41/97 (42%), Positives = 51/97 (52%), Gaps = 11/97 (11%)
Query: 56  GDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDI------GIKTMKKGENA 109
           G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD       GI  M  G   
Sbjct: 30  GQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGGKR 89
Query: 110 VFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
              IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 90  TLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 126

>pdb|2FBN|A Chain A, Plasmodium Falciparum Putative Fk506-Binding Protein Pfl2275c, C-Terminal Tpr-Containing Domain Length = 198

Iteration: 1
 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 5/145 (3%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE---EKKQAKALKVACNLNNAACKLKL 461
           +GN  FK  +   A  +Y++A+ +  +   + D+   +KK  K ++++CNLN A C  K 
Sbjct: 44  EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKK--KNIEISCNLNLATCYNKN 101
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE 521
           KDY +A    +KVL +D  NVKALY+   A +    L+ A+ ++ KA  ++P+N D++  
Sbjct: 102 KDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNS 161
Query: 522 YKTLKEKMKEYNKKEAKFYGNMFAK 546
           Y+    K+KE  KK+   +G MF K
Sbjct: 162 YELCVNKLKEARKKDKLTFGGMFDK 186

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 41/112 (36%), Positives = 64/112 (57%), Gaps = 12/112 (10%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +GN LFK G Y  A   Y +A+         G +   Q +A+    + N AAC LKL+DY
Sbjct: 34  EGNELFKCGDYGGALAAYTQAL---------GLDATPQDQAV---LHRNRAACHLKLEDY 81
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
            +AE   +K ++ D  +VKALYRR+QA  ++  LD A  D+++ + ++P N+
Sbjct: 82  DKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133

>pdb|4DIP|A Chain A, Crystal Structure Of Human Peptidyl-Prolyl Cis-Trans Isomerase Fkbp14 Length = 125

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 54  ENGDEVEVHYTGTL-LDGTQFDSSR--DRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           + GD + VHY G L  DG+ F S+   +   P  FTLG    +KGWD G+K M  GE   
Sbjct: 30  KGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRK 89
Query: 111 FTIPPELAYGESGSPPTIPPNATLQFDVELL 141
             IPP L YG+ G    IPP +TL F+++LL
Sbjct: 90  LIIPPALGYGKEGK-GKIPPESTLIFNIDLL 119

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 67.4 bits (163), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/86 (41%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 59  VEVHYTGTLLDGTQ-FDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL 117
           V V Y+G L    + FDS+  R TP    LG+   + G ++G+ +M++GE A F   P  
Sbjct: 47  VLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNY 106
Query: 118 AYGESGSPPTIPPNATLQFDVELLSW 143
           AYG  G PP IPPN T+ F++ELL +
Sbjct: 107 AYGTLGCPPLIPPNTTVLFEIELLDF 132

>pdb|3B7X|A Chain A, Crystal Structure Of Human Fk506-Binding Protein 6 Length = 134

Iteration: 1
 Score = 49.3 bits (116), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 63/124 (50%), Gaps = 19/124 (15%)
Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQ------DGTVFVKKGHSEEEQL 317
           +I+ D+ V+K +++EG G    P+  A V VK  G L+      D   F K         
Sbjct: 21  DISGDRGVLKDVIREGAGDLVAPD--ASVLVKYSGYLEHMDRPFDSNYFRKTPRL----- 73
Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
              K  E+  + G++  +++M++ E+A     P YA+G+        ++PPN+TV +E+E
Sbjct: 74  --MKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCP---PLIPPNTTVLFEIE 128
Query: 378 LVSF 381
           L+ F
Sbjct: 129 LLDF 132

>pdb|1FD9|A Chain A, Crystal Structure Of The Macrophage Infectivity Potentiator Protein (Mip) A Major Virulence Factor From Legionella Pneumophila Length = 213

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 121 PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 178
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 179 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>pdb|2UZ5|A Chain A, Solution Structure Of The Fkbp-Domain Of Legionella Pneumophila Mip Length = 137

Iteration: 1
 Score = 62.8 bits (151), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 44/90 (48%), Gaps = 2/90 (2%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P   D V V YTG L+DGT FDS+     P  F + Q  VI GW   ++ M  G      
Sbjct: 45  PGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWTEALQLMPAGSTWEIY 102
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +P  LAYG       I PN TL F + L+S
Sbjct: 103 VPSGLAYGPRSVGGPIGPNETLIFKIHLIS 132

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y +A + Y+KA++    + S                NL NA    K  DY+
Sbjct: 16  GNAYYKQGDYQKAIEYYQKALELDPNNAS-------------AWYNLGNAY--YKQGDYQ 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+LD  N KA YRR  AY +  D   A  D +KALE+DP+N   K      
Sbjct: 61  KAIEYYQKALELDPNNAKAWYRRGNAYYKQGDYQKAIEDYQKALELDPNNAKAKQNLGNA 120
Query: 526 KEKM 529
           K+K 
Sbjct: 121 KQKQ 124

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 28  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 83
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 84  ADSKYCYGPQGRSPYIPPHAALCLEVTL 111

>pdb|2F2D|A Chain A, Solution Structure Of The Fk506-Binding Domain Of Human Fkbp38 Length = 121

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 15  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 68
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 69  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 111

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/88 (35%), Positives = 43/88 (48%), Gaps = 4/88 (4%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 30  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 85
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVEL 140
              +  YG  G  P IPP+A L  +V L
Sbjct: 86  ADSKYCYGPQGRSPYIPPHAALCLEVTL 113

>pdb|2AWG|A Chain A, Structure Of The Ppiase Domain Of The Human Fk506-Binding Protein 8 Length = 118

Iteration: 1
 Score = 42.7 bits (99), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 49/106 (46%), Gaps = 10/106 (9%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 17  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 70
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G    Q     +PP++ +  EV L
Sbjct: 71  LSVPLMDVGETAMVTADSKYCYG---PQGRSPYIPPHAALCLEVTL 113

>pdb|3OE2|A Chain A, 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomerase Ppiase From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3000) Length = 219

Iteration: 1
 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P+    VEV Y G L DG  FD S   + P  F L   +VI GW   ++ M  G      
Sbjct: 132 PDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV 186
Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IP + AYG  G+   I P   L F++EL++
Sbjct: 187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 59/124 (47%), Gaps = 15/124 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D +        A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPN-------NAEAW---YNLGNA--YYKQGDYD 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+LD  N +A Y    AY +  D D A    +KALE+DP+N + K      
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA 120
Query: 526 KEKM 529
           K+K 
Sbjct: 121 KQKQ 124

>pdb|4AIF|A Chain A, Aip Tpr Domain In Complex With Human Hsp90 Peptide Length = 144

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 55/112 (49%), Gaps = 3/112 (2%)
Query: 405 QGNTLFKAGKYARASKRYEKAV---KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
           +GN L++ G    A+ +Y  A+   K ++     G  E  Q         LN   CKL +
Sbjct: 14  EGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLDQQITPLLLNYCQCKLVV 73
Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           ++Y +    C+ +L+    NVKA ++R +A+  + +   A+ D  K LE+DP
Sbjct: 74  EEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQADFAKVLELDP 125

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 55/115 (47%), Gaps = 15/115 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +GN  FK G Y  A + Y +AVK            +    A+  +   N AAC  KL ++
Sbjct: 19  KGNEYFKKGDYPTAMRHYNEAVK------------RDPENAILYS---NRAACLTKLMEF 63
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
           ++A   C   + LDS+ +K   R+A   + M +   A+   + AL++DP N + +
Sbjct: 64  QRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAR 118

>pdb|4APO|A Chain A, Aip Tpr Domain In Complex With Human Tomm20 Peptide Length = 165

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/159 (25%), Positives = 74/159 (46%), Gaps = 5/159 (3%)
Query: 388 WDMNTXXXXXXXXXXXXQGNTLFKAGKYARASKRYEKAV---KYIEYDTSFGDEEKKQAK 444
           W M              +GN L++ G    A+ +Y  A+   K ++     G  E  Q  
Sbjct: 3   WAMTAEEKAKAVPLIHQEGNRLYREGHVKEAAAKYYDAIACLKNLQMKEQPGSPEWIQLD 62
Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                  LN   CKL +++Y +    C+ +L+    NVKA ++R +A+  + +   A+ D
Sbjct: 63  QQITPLLLNYCQCKLVVEEYYEVLDHCSSILNKYDDNVKAYFKRGKAHAAVWNAQEAQAD 122
Query: 505 IKKALEIDPDNRD-VKLEYKTLKEKMKEYNKKE-AKFYG 541
             K LE+DP     V  E + L+ ++++ ++++ A+F G
Sbjct: 123 FAKVLELDPALAPVVSRELQALEARIRQKDEEDKARFRG 161

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 34  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 89
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 90  ADSKYCYGPQGSRSPYIPPHAALCLEVTL 118

>pdb|2D9F|A Chain A, Solution Structure Of Ruh-047, An Fkbp Domain From Human Cdna Length = 135

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 21  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 74
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 75  LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 118

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/89 (35%), Positives = 44/89 (49%), Gaps = 5/89 (5%)
Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
           P  G  V VH   +L +GT+     +      FTLG  +VI+  D+ +  M  GE A+ T
Sbjct: 60  PVKGQVVTVHLQTSLENGTRVQEEPE----LVFTLGDCDVIQALDLSVPLMDVGETAMVT 115
Query: 113 IPPELAYGESGS-PPTIPPNATLQFDVEL 140
              +  YG  GS  P IPP+A L  +V L
Sbjct: 116 ADSKYCYGPQGSRSPYIPPHAALCLEVTL 144

>pdb|2JWX|A Chain A, Solution Structure Of The N-Terminal Domain Of Human Fkbp38 (Fkbp38ntd) Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 9/106 (8%)
Query: 274 KKILKEGD-GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLD 332
           KK L  G  G  RP +G VV V L   L++GT        +EE    F   +  VI  LD
Sbjct: 47  KKTLVPGPPGSSRPVKGQVVTVHLQTSLENGT------RVQEEPELVFTLGDCDVIQALD 100
Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
            +V  M   E A++T   +Y +G   S+     +PP++ +  EV L
Sbjct: 101 LSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTL 144

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 72  QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESG--SPPTI 128
           +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELAYG+ G  S P +
Sbjct: 84  KFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGKEGNFSFPNV 143
Query: 129 PPNATLQFDVELL 141
           PP A L ++VE++
Sbjct: 144 PPMADLLYEVEVI 156

>pdb|2F4E|A Chain A, N-Terminal Domain Of Fkbp42 From Arabidopsis Thaliana Length = 180

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 71/150 (47%), Gaps = 14/150 (9%)
Query: 237 SASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKL 296
           S    EG VPP    +           +E+ D+K V K+I+KEG G  +P++ +   +  
Sbjct: 28  SEPSQEGNVPPKVDSE-----------AEVLDEK-VSKQIIKEGHG-SKPSKYSTCFLHY 74
Query: 297 IGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGS 356
               ++     +    E++ +      E++ + GL   V +MK  E AL+ +  E A+G 
Sbjct: 75  RAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAYGK 134
Query: 357 AESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            E       VPP + + YEVE++ F++ KE
Sbjct: 135 -EGNFSFPNVPPMADLLYEVEVIGFDETKE 163

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 51/108 (47%), Gaps = 15/108 (13%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA++                ++ +   NL NA    K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKALE-------------LDPRSAEAWYNLGNA--YYKQGDYD 52
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 100

>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           NL NA    K  DY +A +   K L+LD  N +A Y    AY +  D D A    +KALE
Sbjct: 14  NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71
Query: 511 IDPDNRDVKLEYKTLKEKM 529
           +DP+N + K      K+K 
Sbjct: 72  LDPNNAEAKQNLGNAKQKQ 90

>pdb|3RKV|A Chain A, C-Terminal Domain Of Protein C56c10.10, A Putative Peptidylprolyl Isomerase, From Caenorhabditis Elegans Length = 162

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 63/146 (43%), Gaps = 8/146 (5%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSF-----GDEEKKQAKALKVACNLNNAACKL 459
           +GN LF    Y  A   Y  A+  +  DT       G+ E  +     +    N + C L
Sbjct: 17  KGNELFVQKDYKEAIDAYRDALTRL--DTLILREKPGEPEWVELDRKNIPLYANMSQCYL 74
Query: 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-V 518
            + D  +AE+  ++VL  +  N KAL+RRA+A I    LD AE D+K  L   P     V
Sbjct: 75  NIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVV 134
Query: 519 KLEYKTLKEKMKEYNKKEAKFYGNMF 544
             E K + E+  E        Y  MF
Sbjct: 135 AREMKIVTERRAEKKADSRVTYSKMF 160

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 55/124 (44%), Gaps = 15/124 (12%)
Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA++               A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKALELY----------PNNAEAW---YNLGNA--YYKQGDYD 60
Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +   K L+L   N +A Y    AY +  D D A    +KALE+ P+N + K      
Sbjct: 61  EAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAKQNLGNA 120
Query: 526 KEKM 529
           K+K 
Sbjct: 121 KQKQ 124

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           QGN LF   KY  A+  Y +A+                   L      N A C LK++  
Sbjct: 15  QGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQQP 59
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R
Sbjct: 60  EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 111

>pdb|4DT4|A Chain A, Crystal Structure Of The Ppiase-Chaperone Slpa With The Chaperone Binding Site Occupied By The Linker Of The Purification Tag Length = 169

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 40/70 (57%)
Query: 51  DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV 110
           ++ ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   
Sbjct: 23  ESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTT 82
Query: 111 FTIPPELAYG 120
           F++ P+ A+G
Sbjct: 83  FSLEPDAAFG 92

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/127 (24%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q N  FKA  Y  A K Y +A+            E   + A+      N +   L+ + Y
Sbjct: 12  QANDYFKAKDYENAIKFYSQAI------------ELNPSNAIYYG---NRSLAYLRTECY 56
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
             A    T+ ++LD + +K  YRRA + + +     A  D +  +++ P ++D K++Y+ 
Sbjct: 57  GYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQE 116
Query: 525 LKEKMKE 531
             + +K+
Sbjct: 117 CNKIVKQ 123

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 15/112 (13%)
Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           QGN LF   KY  A+  Y +A+                   L      N A C LK++  
Sbjct: 10  QGNRLFVGRKYPEAAACYGRAIT---------------RNPLVAVYYTNRALCYLKMQQP 54
Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R
Sbjct: 55  EQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	557
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	1e-160
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	2e-57
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-125
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	4e-63
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-100
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	6e-24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	2e-18
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-95
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	2e-58
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	4e-29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	9e-90
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-30
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	1e-20
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-66
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	4e-26
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	2e-19
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	7e-66
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	1e-63
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	8e-27
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-19
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-63
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-24
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	2e-17
2ppn_A	107	FK506-binding protein 1A; high resolution protein	6e-63
2ppn_A	107	FK506-binding protein 1A; high resolution protein	2e-25
2ppn_A	107	FK506-binding protein 1A; high resolution protein	3e-17
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	2e-61
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	3e-23
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	9e-16
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	4e-61
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-25
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	5e-18
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	4e-59
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	5e-23
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	7e-16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	9e-59
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	2e-58
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	1e-26
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	5e-17
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	6e-58
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	8e-21
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	2e-12
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	1e-56
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	5e-26
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	4e-16
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	9e-56
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	8e-32
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	1e-25
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	2e-55
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	1e-29
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	5e-25
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-55
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	3e-19
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	5e-12
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	3e-53
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	3e-28
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	4e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	2e-52
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	6e-20
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	8e-16
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	3e-52
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-29
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	1e-22
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	1e-51
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	3e-16
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	6e-12
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	2e-51
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	5e-19
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	9e-14
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	4e-49
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	8e-18
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	1e-10
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-48
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	3e-39
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	2e-14
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	4e-09
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	9e-39
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	1e-37
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	4e-13
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	3e-09
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	3e-37
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	1e-14
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	6e-09
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	1e-29
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-28
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	3e-27
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	1e-26
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	1e-26
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	1e-25
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	3e-25
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-22
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	7e-21
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-20
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-19
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-16
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	4e-10
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	2e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-19
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	4e-10
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	4e-19
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	1e-05
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	3e-05
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-17
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-15
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	4e-09
2l6j_A	111	TPR repeat-containing protein associated with HSP;	2e-17
2l6j_A	111	TPR repeat-containing protein associated with HSP;	3e-09
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	3e-16
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	9e-05
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	3e-16
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	4e-06
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-16
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-15
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-16
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-12
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	1e-15
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	4e-06
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-13
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-09
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	1e-14
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	3e-05
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-14
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	1e-04
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	2e-14
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	2e-13
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-13
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	8e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	3e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-06
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	7e-13
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-06
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-05
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-04
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-12
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	2e-04
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	4e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-09
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	5e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-09
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	5e-11
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	9e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	8e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-08
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	4e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-10
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	6e-09
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	2e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-10
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-06
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	5e-05
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	7e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	3e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	4e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	1e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	9e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-05
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	8e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	5e-09
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	9e-06
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	4e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	4e-09
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	1e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-09
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-07
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	7e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	7e-09
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	6e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	8e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	2e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	1e-08
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	6e-06
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	7e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	3e-08
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	5e-05
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	3e-08
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	6e-06
4g1t_A	472	Interferon-induced protein with tetratricopeptide	3e-08
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	3e-07
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	2e-05
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	5e-04
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	3e-07
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	4e-05
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	4e-04
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	3e-06
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	8e-05
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	3e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	4e-06
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	4e-06
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	2e-04
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	3e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	9e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	9e-06
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	2e-05
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	4e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	1e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	9e-05
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	2e-04
2kat_A	115	Uncharacterized protein; NESG, structure, structur	2e-05
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	3e-05
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-04
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	5e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-05
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	6e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	9e-05
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	2e-04
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	3e-04
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	2e-04
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	3e-04
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	4e-04
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	4e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	5e-04
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	6e-04

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  460 bits (1184), Expect = e-160
 Identities = 289/358 (80%), Positives = 318/358 (88%), Gaps = 2/358 (0%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
           KVGEE EIG QGLKKKL+KEGEGWDTPE GDEVEVHYTGTLLDG +FDSSRDR   FKF 
Sbjct: 1   KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFK 60

Query: 87  LGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV 146
           LGQG VIKGWD GIKTMKKGENA+FTIPPELAYGESGSPPTIP NATLQFDVELLSWTSV
Sbjct: 61  LGQGQVIKGWDQGIKTMKKGENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSV 120

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           +DI KDGGI KKILKEG+KWENPKD DEV V YEARLEDG VV K++GVEFTVKDGH CP
Sbjct: 121 RDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKSEGVEFTVKDGHLCP 180

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            LAKAVKTMKKGEKVLLAVKPQYGFGE G+ A+G  GAVPPNA+L I LELVSWKTV+EI
Sbjct: 181 ALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI 240

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            DDKK++KK+LKE +G+ERPNEGAVV VK+ GKLQDGTVF+KKGH +E++ FEFKTDEE 
Sbjct: 241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEA 299

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           VI+GLDRAV+ MKK EVAL+TI PEYA+GS ES+Q+ A+VPPNSTV YEVELVSF K+
Sbjct: 300 VIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQD-AIVPPNSTVIYEVELVSFVKD 356

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A Length = 356

 Score =  194 bits (495), Expect = 2e-57
 Identities = 91/250 (36%), Positives = 128/250 (51%), Gaps = 17/250 (6%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
             G+ KK+LKEGE W+ P+  DEV V+Y   L DG        + D  +F +  G     
Sbjct: 10  KQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKG 69

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT 267
             + +KTMKKGE  L  + P+  +GE G         +P NATLQ  +EL+SW +V +I 
Sbjct: 70  WDQGIKTMKKGENALFTIPPELAYGESGSP-----PTIPANATLQFDVELLSWTSVRDIA 124

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D  + KKILKEGD +E P +   V VK   +L+DGTV        + +  EF   +  +
Sbjct: 125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVV------SKSEGVEFTVKDGHL 178

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELA--VVPPNSTVHYEVELVSFEKEK 385
              L +AV TMKK E  LL + P+Y FG            VPPN+++  ++ELVS++   
Sbjct: 179 CPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVT 238

Query: 386 ESWDMNTEEK 395
           E  D     K
Sbjct: 239 EIGDDKKILK 248

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  375 bits (963), Expect = e-125
 Identities = 138/406 (33%), Positives = 226/406 (55%), Gaps = 19/406 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV----GKADGVEFTVKDG 202
               KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G
Sbjct: 25  ITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKG 84

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT 262
                    V TMK+GE   L  KP+Y +G  G         +P NATL   +EL+ +K 
Sbjct: 85  QVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGS-----LPKIPSNATLFFEIELLDFKG 139

Query: 263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT 322
             ++ +D  +I++  ++G+G+  PNEGA V++ L G+   G +F  +  +     F    
Sbjct: 140 -EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDCRDVA-----FTVGE 192

Query: 323 DEEQ-VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            E+  +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SF
Sbjct: 193 GEDHDIPIGIDKALEKMQREEQCILYLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSF 250

Query: 382 EKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKK 441
           EK KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K
Sbjct: 251 EKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESK 310

Query: 442 QAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA 501
            +++  +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A
Sbjct: 311 ASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESA 370

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
           + D +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K 
Sbjct: 371 KGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFKKF 416

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score =  213 bits (542), Expect = 4e-63
 Identities = 100/262 (38%), Positives = 151/262 (57%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 2   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 61

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMK+GE       PE AYG +GS P 
Sbjct: 62  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCKPEYAYGSAGSLPK 121

Query: 128 IPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGM 187
           IP NATL F++ELL +   +D+ +DGGII++  ++GE + NP +   V ++ E R    M
Sbjct: 122 IPSNATLFFEIELLDFK-GEDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRCGGRM 180

Query: 188 VVGKADGVEFTVKDGHF---CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA 244
              +   V FTV +G        + KA++ M++ E+ +L + P+YGFGE GK     +  
Sbjct: 181 FDCR--DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFG 234

Query: 245 VPPNATLQIALELVSWKTVSEI 266
           + PNA L   + L S++   E 
Sbjct: 235 IEPNAELIYEVTLKSFEKAKES 256

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  305 bits (783), Expect = e-100
 Identities = 109/288 (37%), Positives = 180/288 (62%), Gaps = 13/288 (4%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           S + +D  +I++I   G+G+ +PNEGA+V+V L G  +D           +++   F+  
Sbjct: 19  SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLF--------DQRELRFEIG 70

Query: 324 EEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
           E +   +  GL+RA+  M+K E +++ + P YAFGS    +E   +PPN+ + YE+ L S
Sbjct: 71  EGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGS--VGKEKFQIPPNAELKYELHLKS 128

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK 440
           FEK KESW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE 
Sbjct: 129 FEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEA 188

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
           ++A+AL++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +L
Sbjct: 189 QKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFEL 248

Query: 501 AEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548
           A  D +K L++ P+N+  K +    +++++    +E K Y NMF ++ 
Sbjct: 249 ARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score =  101 bits (254), Expect = 6e-24
 Identities = 35/119 (29%), Positives = 60/119 (50%), Gaps = 10/119 (8%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---N 91
            + G+ +++   GEG+  P  G  VEV   G   D   FD         +F +G+G   +
Sbjct: 23  EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLD 76

Query: 92  VIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT-IPPNATLQFDVELLSWTSVKDI 149
           +  G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+ 
Sbjct: 77  LPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKES 135

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 85.7 bits (212), Expect = 2e-18
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 9/124 (7%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDG---HF 204
            + +DGGII++I   GE +  P +   V V  E   +D +   +   + F + +G     
Sbjct: 20  HMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQR--ELRFEIGEGENLDL 77

Query: 205 CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS 264
              L +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   
Sbjct: 78  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK 133

Query: 265 EITD 268
           E  +
Sbjct: 134 ESWE 137

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  290 bits (744), Expect = 4e-95
 Identities = 107/262 (40%), Positives = 142/262 (54%), Gaps = 11/262 (4%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
            A EM A       AP+   G +     ++G+ K + +EG G + P  GD V VHYTG L
Sbjct: 22  TAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWL 81

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
           LDGT+FDSS DR   F F LG+G VIK WDI I TMK GE    T  PE AYG +GSPP 
Sbjct: 82  LDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYAYGSAGSPPK 141

Query: 128 IPPNATLQFDVELLS-WTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG 186
           IPPNATL F+VEL           +DGGII++I   GE +  P +   V V  E   +D 
Sbjct: 142 IPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDK 201

Query: 187 MVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG 243
           +   +   + F + +G        L +A++ M+KGE  ++ +KP Y FG  GK     + 
Sbjct: 202 LFDQR--ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KF 255

Query: 244 AVPPNATLQIALELVSWKTVSE 265
            +PPNA L+  L L S++   E
Sbjct: 256 QIPPNAELKYELHLKSFEKAKE 277

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  195 bits (496), Expect = 2e-58
 Identities = 86/283 (30%), Positives = 134/283 (47%), Gaps = 35/283 (12%)

Query: 127 TIPPNATLQFDVELLSWTSVK------------DICKDGGIIKKILKEGEKWENPKDLDE 174
            + P  +     E+ +  S                 +D G++K I +EG   E P   D 
Sbjct: 13  GLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGTGTEMPMIGDR 72

Query: 175 VLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYG 230
           V V+Y   L DG      + + D   F +  G        A+ TMK GE   +  KP+Y 
Sbjct: 73  VFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCKPEYA 132

Query: 231 FGEKGKSASGNEGAVPPNATLQIALELVS-WKTVSEITDDKKVIKKILKEGDGFERPNEG 289
           +G  G         +PPNATL   +EL           +D  +I++I   G+G+ +PNEG
Sbjct: 133 YGSAGSP-----PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRRIQTRGEGYAKPNEG 187

Query: 290 AVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVID---GLDRAVITMKKNEVALL 346
           A+V+V L G  +D  +F ++          F+  E + +D   GL+RA+  M+K E +++
Sbjct: 188 AIVEVALEGYYKDK-LFDQRE-------LRFEIGEGENLDLPYGLERAIQRMEKGEHSIV 239

Query: 347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWD 389
            + P YAFGS   ++    +PPN+ + YE+ L SFEK KESW+
Sbjct: 240 YLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWE 280

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A Length = 280

 Score =  115 bits (290), Expect = 4e-29
 Identities = 51/179 (28%), Positives = 78/179 (43%), Gaps = 23/179 (12%)

Query: 234 KGKSASGNEGAVPPNATLQIALELVSWKTVSE------------ITDDKKVIKKILKEGD 281
                  +   + P  +   A E+ + ++ ++               D+ V+K I +EG 
Sbjct: 3   SSHHHHHHSSGLVPRGSHMTAEEMKATESGAQSAPLPMEGVDISPKQDEGVLKVIKREGT 62

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITM 338
           G E P  G  V V   G L DGT F   + +        F F   + +VI   D A+ TM
Sbjct: 63  GTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRK-----DKFSFDLGKGEVIKAWDIAIATM 117

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE 397
           K  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E  + + +      
Sbjct: 118 KVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGEDLTEEEDGGIIRR 173

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  278 bits (713), Expect = 9e-90
 Identities = 100/343 (29%), Positives = 164/343 (47%), Gaps = 26/343 (7%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
              E  ++         E  +     EG VPP    +                D+KV K+
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQ-----EGNVPPKVDSEA------------EVLDEKVSKQ 54

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKT-DEEQVIDGLDRA 334
           I+KEG G  +P++ +   +      ++     +    E++   E     E++ + GL   
Sbjct: 55  IIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQP-IELVLGKEKKELAGLAIG 112

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELV---SFEKEKESWDMN 391
           V +MK  E AL+ +  E A+G  E       VPP + + YEVE++     ++ K   DM 
Sbjct: 113 VASMKSGERALVHVGWELAYGK-EGNFSFPNVPPMADLLYEVEVIGFDETKEGKARSDMT 171

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAKALKVA 449
            EE+I AA ++K  GN+LFK  K   A ++YE A+ Y+  D  F    + +  A A+K  
Sbjct: 172 VEERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNP 231

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
           C+LN AAC +KLK Y +A   C  VL  + +N KAL+RR +A  ++  +D A  D +KA 
Sbjct: 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQ 291

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSD 552
           +  PD++ ++ E + L E+ K   +K+ + Y  +F   + G  
Sbjct: 292 KYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score =  121 bits (304), Expect = 1e-30
 Identities = 38/150 (25%), Positives = 68/150 (45%), Gaps = 5/150 (3%)

Query: 2   DEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEV 61
            E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       +
Sbjct: 14  QESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFL 72

Query: 62  HYTGTLLDGTQ-FDSSRDRSTPFKFTLGQ-GNVIKGWDIGIKTMKKGENAVFTIPPELAY 119
           HY     +    F+ +     P +  LG+    + G  IG+ +MK GE A+  +  ELAY
Sbjct: 73  HYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELAY 132

Query: 120 GESGSPP--TIPPNATLQFDVELLSWTSVK 147
           G+ G+     +PP A L ++VE++ +   K
Sbjct: 133 GKEGNFSFPNVPPMADLLYEVEVIGFDETK 162

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 92.4 bits (229), Expect = 1e-20
 Identities = 34/174 (19%), Positives = 63/174 (36%), Gaps = 22/174 (12%)

Query: 104 KKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEG 163
              E+ + T    + + E      +PP    + +V             D  + K+I+KEG
Sbjct: 12  HDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVL------------DEKVSKQIIKEG 59

Query: 164 EKWENPKDLDEVLVNYEARLEDGMVV---GKADGVEFTV---KDGHFCPTLAKAVKTMKK 217
                P       ++Y A  ++          +     +   K+      LA  V +MK 
Sbjct: 60  H-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKS 118

Query: 218 GEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK 271
           GE+ L+ V  +  +G++G  +      VPP A L   +E++ +    E      
Sbjct: 119 GERALVHVGWELAYGKEGNFS---FPNVPPMADLLYEVEVIGFDETKEGKARSD 169

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  210 bits (538), Expect = 2e-66
 Identities = 71/134 (52%), Positives = 91/134 (67%), Gaps = 6/134 (4%)

Query: 29  GEEKEI---GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GE+ +I    + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F
Sbjct: 3   GEKIDITPKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
            LG+GNVIKGWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W S
Sbjct: 63  NLGRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEW-S 121

Query: 146 VKDIC--KDGGIIK 157
            +DI   +DG I++
Sbjct: 122 AEDISPDRDGTILR 135

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score =  102 bits (257), Expect = 4e-26
 Identities = 47/129 (36%), Positives = 61/129 (47%), Gaps = 11/129 (8%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D  V+K I KEG G  +P  G  VKV  +G L++GT F     +G       F F  
Sbjct: 10  PKKDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRG-----DQFSFNL 64

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
               VI G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  + 
Sbjct: 65  GRGNVIKGWDLGVATMTKGEVAEFTIRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS 121

Query: 383 KEKESWDMN 391
            E  S D +
Sbjct: 122 AEDISPDRD 130

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1 Length = 135

 Score = 83.9 bits (208), Expect = 2e-19
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 9/129 (6%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G        + D   F +  G+   
Sbjct: 12  KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
                V TM KGE     ++  YG+G+ G   S     +P  ATL   +EL  W      
Sbjct: 72  GWDLGVATMTKGEVAEFTIRSDYGYGDAG---SP--PKIPGGATLIFEVELFEWSAEDIS 126

Query: 267 TDDKKVIKK 275
            D    I +
Sbjct: 127 PDRDGTILR 135

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score =  211 bits (540), Expect = 7e-66
 Identities = 58/192 (30%), Positives = 101/192 (52%), Gaps = 2/192 (1%)

Query: 363 LAVVPPNSTVHYEVELVSFEK-EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKR 421
           +     +       E + F+  +K  +D   EEK+++A   KE+GN  FK  +   A  +
Sbjct: 1   MGSSHHHHHHSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVK 60

Query: 422 YEKAVKYIEYDTSFGDEEK-KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR 480
           Y++A+ +  +   + D+    + K ++++CNLN A C  K KDY +A    +KVL +D  
Sbjct: 61  YKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKN 120

Query: 481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
           NVKALY+   A +    L+ A+ ++ KA  ++P+N D++  Y+    K+KE  KK+   +
Sbjct: 121 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTF 180

Query: 541 GNMFAKMNTGSD 552
           G MF K     +
Sbjct: 181 GGMFDKGPLYEE 192

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  203 bits (518), Expect = 1e-63
 Identities = 61/123 (49%), Positives = 81/123 (65%), Gaps = 1/123 (0%)

Query: 22  DAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRS 80
            A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L +G +FDSS DR+
Sbjct: 3   PATVTEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN 62

Query: 81  TPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVEL 140
            PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P IP NATL F++EL
Sbjct: 63  EPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPKIPSNATLFFEIEL 122

Query: 141 LSW 143
           L +
Sbjct: 123 LDF 125

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score =  104 bits (261), Expect = 8e-27
 Identities = 44/122 (36%), Positives = 62/122 (50%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 15  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 69

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S      +P N+T+ +E+EL+ F+
Sbjct: 70  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK 126

Query: 383 KE 384
            E
Sbjct: 127 GE 128

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A Length = 128

 Score = 82.3 bits (204), Expect = 5e-19
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 17  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 76

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 77  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 126

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score =  202 bits (515), Expect = 2e-63
 Identities = 56/111 (50%), Positives = 70/111 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL  
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLKV 112

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 97.3 bits (243), Expect = 2e-24
 Identities = 37/120 (30%), Positives = 55/120 (45%), Gaps = 12/120 (10%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEF 320
           SE+ +   V    +  GDG   P  G +V +   G L++G  F   V +G       F+ 
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRG-----SPFQC 54

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
                QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 55  NIGVGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1 Length = 113

 Score = 77.2 bits (191), Expect = 2e-17
 Identities = 27/113 (23%), Positives = 46/113 (40%), Gaps = 9/113 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G      V +    +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+  
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRG---FP--GLIPPNSTLVFDVELLKV 112

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score =  200 bits (512), Expect = 6e-63
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 99.6 bits (249), Expect = 2e-25
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 11/114 (9%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           V  + +  GDG   P  G    V   G L+DG  F     +      + F+F   +++VI
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRN-----KPFKFMLGKQEVI 56

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            G +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 57  RGWEEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ... Length = 107

 Score = 76.4 bits (189), Expect = 3e-17
 Identities = 27/112 (24%), Positives = 46/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG        +    +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G  G       G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATG---HP--GIIPPHATLVFDVELLKLE 107

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score =  197 bits (504), Expect = 2e-61
 Identities = 63/105 (60%), Positives = 75/105 (71%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
            L+KK++  G+G   P+ G +V VHY G   DG QFDSSR R  PF+FTLG G VIKGWD
Sbjct: 25  QLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWD 84

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+ TM  GE A+FTIP +LAYGE G PP IPP ATL F+VELL+
Sbjct: 85  QGVATMTLGEKALFTIPYQLAYGERGYPPVIPPKATLVFEVELLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 94.2 bits (235), Expect = 3e-23
 Identities = 40/123 (32%), Positives = 60/123 (48%), Gaps = 11/123 (8%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
           +T    +   ++ KK+L  GDG  +P  G  V V   G+  DG  F     +G     + 
Sbjct: 15  QTQGPGSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRG-----KP 69

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F+F     +VI G D+ V TM   E AL TI  + A+G         V+PP +T+ +EVE
Sbjct: 70  FQFTLGAGEVIKGWDQGVATMTLGEKALFTIPYQLAYGERGYP---PVIPPKATLVFEVE 126

Query: 378 LVS 380
           L++
Sbjct: 127 LLA 129

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia} Length = 130

 Score = 73.1 bits (180), Expect = 9e-16
 Identities = 32/112 (28%), Positives = 50/112 (44%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
              + KK+L  G+    P+   +V V+Y+ R  DG        +    +FT+  G     
Sbjct: 23  SAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKG 82

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V TM  GEK L  +  Q  +GE+G         +PP ATL   +EL++
Sbjct: 83  WDQGVATMTLGEKALFTIPYQLAYGERG---YP--PVIPPKATLVFEVELLA 129

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score =  197 bits (502), Expect = 4e-61
 Identities = 62/136 (45%), Positives = 85/136 (62%), Gaps = 1/136 (0%)

Query: 9   AANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTL 67
             +E   + +    A + + GE+     ++G+ K + + G G +TP  GD+V VHY G L
Sbjct: 6   TTDEGAKNNEESPTATVAEQGEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKL 65

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT 127
            +G +FDSS DR+ PF F+LG+G VIK WDIG+ TMKKGE       PE AYG +GS P 
Sbjct: 66  SNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGSLPK 125

Query: 128 IPPNATLQFDVELLSW 143
           IP NATL F++ELL +
Sbjct: 126 IPSNATLFFEIELLDF 141

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 99.7 bits (249), Expect = 5e-25
 Identities = 45/122 (36%), Positives = 63/122 (51%), Gaps = 11/122 (9%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKT 322
              D+ V+K + + G+G E P  G  V V   GKL +G  F     +      + F F  
Sbjct: 31  SKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRN-----EPFVFSL 85

Query: 323 DEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
            + QVI   D  V TMKK E+  L   PEYA+GSA S   L  +P N+T+ +E+EL+ F+
Sbjct: 86  GKGQVIKAWDIGVATMKKGEICHLLCKPEYAYGSAGS---LPKIPSNATLFFEIELLDFK 142

Query: 383 KE 384
            E
Sbjct: 143 GE 144

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A Length = 144

 Score = 80.1 bits (198), Expect = 5e-18
 Identities = 37/115 (32%), Positives = 56/115 (48%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D+V V+Y+ +L +G        + +   F++  G    
Sbjct: 33  KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIK 92

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G   S     +P NATL   +EL+ +K
Sbjct: 93  AWDIGVATMKKGEICHLLCKPEYAYGSAG---SL--PKIPSNATLFFEIELLDFK 142

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score =  191 bits (488), Expect = 4e-59
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 7/129 (5%)

Query: 26  MKVGEEKE----IGNQGLKKKLVKEGEGWD--TPENGDEVEVHYTGTLLD-GTQFDSSRD 78
           M   +E E      + G+ K ++K+G+  +   P+ G+EV VHY G L   G  FDSS D
Sbjct: 1   MTTEQEFEKVELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD 60

Query: 79  RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDV 138
           R+ PFKF L QG VIKGWDI + +M+K E  +  I     YG+ G   +IP N+ L F++
Sbjct: 61  RNVPFKFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCGESIPGNSVLLFEI 120

Query: 139 ELLSWTSVK 147
           ELLS+  ++
Sbjct: 121 ELLSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 93.9 bits (234), Expect = 5e-23
 Identities = 45/127 (35%), Positives = 66/127 (51%), Gaps = 14/127 (11%)

Query: 265 EITDDKKVIKKILKEGDGFER--PNEGAVVKVKLIGKLQD-GTVF---VKKGHSEEEQLF 318
           E+T D  VIK ILK+GD  E   P +G  V V  +GKL+  G VF     +        F
Sbjct: 11  ELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRN-----VPF 65

Query: 319 EFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           +F  ++ +VI G D  V +M+KNE  L+ I   Y +G          +P NS + +E+EL
Sbjct: 66  KFHLEQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEGCG---ESIPGNSVLLFEIEL 122

Query: 379 VSFEKEK 385
           +SF + +
Sbjct: 123 LSFRELE 129

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A Length = 129

 Score = 73.1 bits (180), Expect = 7e-16
 Identities = 39/124 (31%), Positives = 68/124 (54%), Gaps = 12/124 (9%)

Query: 147 KDICKDGGIIKKILKEGEKWE--NPKDLDEVLVNYEARLED-GMV----VGKADGVEFTV 199
            ++  DGG+IK ILK+G++ E   PK  +EV V+Y  +LE  G V      +    +F +
Sbjct: 10  VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHL 69

Query: 200 KDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + G         V +M+K EK L+ ++  YG+G++G    G   ++P N+ L   +EL+S
Sbjct: 70  EQGEVIKGWDICVSSMRKNEKCLVRIESMYGYGDEG---CG--ESIPGNSVLLFEIELLS 124

Query: 260 WKTV 263
           ++ +
Sbjct: 125 FREL 128

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score =  191 bits (488), Expect = 9e-59
 Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 4/159 (2%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY---DTSFGDEEKKQAKAL 446
              ++K+++    +++GN LF    Y  A   Y  A+  ++        G+ E  +    
Sbjct: 2   NAEDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRK 61

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
            +    N + C L + D  +AE+  ++VL  +  N KAL+RRA+A I    LD AE D+K
Sbjct: 62  NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLK 121

Query: 507 KALEIDPDNRD-VKLEYKTLKEKMKEYNKKEAKFYGNMF 544
             L   P     V  E K + E+  E        Y  MF
Sbjct: 122 LLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMF 160

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  189 bits (483), Expect = 2e-58
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 4/128 (3%)

Query: 20  PDDAPMMKVGEEKEI--GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSS 76
           P  +   ++ +      G++G+ K +++EG G D       V V Y+G L      FDS+
Sbjct: 7   PGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSN 65

Query: 77  RDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
             R TP    LG+   + G ++G+ +M++GE A F   P  AYG  G PP IPPN T+ F
Sbjct: 66  YFRKTPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLF 125

Query: 137 DVELLSWT 144
           ++ELL + 
Sbjct: 126 EIELLDFL 133

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score =  103 bits (260), Expect = 1e-26
 Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 17/144 (11%)

Query: 242 EGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ 301
           EG   P  +L   L     + + +I+ D+ V+K +++EG G +     A V VK  G L+
Sbjct: 2   EGDDAPGQSLYERLS----QRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLE 56

Query: 302 D-GTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSA 357
                F     +           K  E+  + G++  +++M++ E+A     P YA+G+ 
Sbjct: 57  HMDRPFDSNYFRK-----TPRLMKLGEDITLWGMELGLLSMRRGELARFLFKPNYAYGTL 111

Query: 358 ESQQELAVVPPNSTVHYEVELVSF 381
                  ++PPN+TV +E+EL+ F
Sbjct: 112 GCP---PLIPPNTTVLFEIELLDF 132

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens} Length = 134

 Score = 76.9 bits (190), Expect = 5e-17
 Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 11/118 (9%)

Query: 148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLED-GMV----VGKADGVEFTVKDG 202
           DI  D G++K +++EG   +       VLV Y   LE           +       + + 
Sbjct: 21  DISGDRGVLKDVIREGA-GDLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGED 79

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                +   + +M++GE      KP Y +G  G         +PPN T+   +EL+ +
Sbjct: 80  ITLWGMELGLLSMRRGELARFLFKPNYAYGTLG---CP--PLIPPNTTVLFEIELLDF 132

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score =  187 bits (477), Expect = 6e-58
 Identities = 51/103 (49%), Positives = 63/103 (61%), Gaps = 1/103 (0%)

Query: 47  GEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG 106
           G        GD + +HYTG L DGT+FDSS  ++ PF F+LG G VIKGWD G+  M +G
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEG 59

Query: 107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDI 149
           E     IP EL YGE G+PP IP  ATL F+VELL      ++
Sbjct: 60  EKRKLVIPSELGYGERGAPPKIPGGATLVFEVELLKIERRTEL 102

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 86.4 bits (215), Expect = 8e-21
 Identities = 32/110 (29%), Positives = 51/110 (46%), Gaps = 12/110 (10%)

Query: 280 GDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           G    +  +G V+ +   GKL+DGT F   + +      Q F F     QVI G D+ ++
Sbjct: 1   GSP-IKSRKGDVLHMHYTGKLEDGTEFDSSLPQN-----QPFVFSLGTGQVIKGWDQGLL 54

Query: 337 TMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
            M + E   L I  E  +G   +      +P  +T+ +EVEL+  E+  E
Sbjct: 55  GMCEGEKRKLVIPSELGYGERGAP---PKIPGGATLVFEVELLKIERRTE 101

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 102

 Score = 62.6 bits (153), Expect = 2e-12
 Identities = 24/104 (23%), Positives = 47/104 (45%), Gaps = 9/104 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVL 222
              +  D + ++Y  +LEDG      + +     F++  G       + +  M +GEK  
Sbjct: 4   IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRK 63

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
           L +  + G+GE+G   +     +P  ATL   +EL+  +  +E+
Sbjct: 64  LVIPSELGYGERG---AP--PKIPGGATLVFEVELLKIERRTEL 102

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  184 bits (470), Expect = 1e-56
 Identities = 50/117 (42%), Positives = 66/117 (56%), Gaps = 8/117 (6%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSS-------RDRSTPFKFTL 87
           G     K ++K+G+  + P+ GD V   YTGTL DGT FD++       +  + P  F +
Sbjct: 2   GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKV 61

Query: 88  GQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLSW 143
           G G VI+GWD  + TM KGE A   I PE AYG+ G P   IPPN  L F+VEL+  
Sbjct: 62  GVGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI 118

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score =  101 bits (255), Expect = 5e-26
 Identities = 45/119 (37%), Positives = 59/119 (49%), Gaps = 7/119 (5%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF-----VKKGHSEEEQLFEFKTD 323
             K  K ILK+GD    P +G VV     G L DGTVF           +  +   FK  
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
             +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNTKLIFEVELVDID 119

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} PDB: 1pbk_A* Length = 119

 Score = 73.5 bits (181), Expect = 4e-16
 Identities = 38/120 (31%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV-----------VGKADGVEFTVK 200
                K ILK+G+K   PK  D V   Y   L DG V              A  + F V 
Sbjct: 3   PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVG 62

Query: 201 DGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
            G       +A+ TM KGEK  L ++P++ +G+KG+        +PPN  L   +ELV  
Sbjct: 63  VGKVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD----AKIPPNTKLIFEVELVDI 118

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  182 bits (465), Expect = 9e-56
 Identities = 44/129 (34%), Positives = 60/129 (46%), Gaps = 8/129 (6%)

Query: 29  GEEKE--IGNQGLKKKLVKEG-EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKF 85
           GEE    +GN  L+KK +  G  G   P  G  V VH   +L +GT+            F
Sbjct: 7   GEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVF 62

Query: 86  TLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PPTIPPNATLQFDVELLSWT 144
           TLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P IPP+A L  +V L +  
Sbjct: 63  TLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAV 122

Query: 145 SVKDICKDG 153
              D+   G
Sbjct: 123 DRPDLEMSG 131

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  118 bits (298), Expect = 8e-32
 Identities = 36/123 (29%), Positives = 56/123 (45%), Gaps = 9/123 (7%)

Query: 265 EITDDKKVIKKILKEG-DGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G  G  RP +G VV V L   L++GT        +EE    F   
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 65

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  VI  LD +V  M   E A++T   +Y +G   S+     +PP++ +  EV L +   
Sbjct: 66  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVD 123

Query: 384 EKE 386
             +
Sbjct: 124 RPD 126

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 135

 Score =  101 bits (253), Expect = 1e-25
 Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 5/123 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 12  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 71

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI 266
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +     ++
Sbjct: 72  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDRPDL 127

Query: 267 TDD 269
              
Sbjct: 128 EMS 130

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  181 bits (461), Expect = 2e-55
 Identities = 37/111 (33%), Positives = 51/111 (45%), Gaps = 5/111 (4%)

Query: 35  GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVI 93
           GN  L+KK +  G      P  G  V VH   +L +GT+            FTLG  +VI
Sbjct: 11  GNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEP----ELVFTLGDCDVI 66

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT 144
           +  D+ +  M  GE A+ T   +  YG  G  P IPP+A L  +V L +  
Sbjct: 67  QALDLSVPLMDVGETAMVTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score =  111 bits (281), Expect = 1e-29
 Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 10/119 (8%)

Query: 265 EITDDKKVIKKILKEGDG-FERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           +I  +  + KK L  G     RP +G VV V L   L++GT        +EE    F   
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLG 61

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  VI  LD +V  M   E A++T   +Y +G          +PP++ +  EV L +  
Sbjct: 62  DCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGRS---PYIPPHAALCLEVTLKTAV 117

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A Length = 118

 Score = 98.9 bits (247), Expect = 5e-25
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 6/115 (5%)

Query: 148 DICKDGGIIKKILKEGE-KWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 8   DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
            L  +V  M  GE  ++    +Y +G +G+        +PP+A L + + L +  
Sbjct: 68  ALDLSVPLMDVGETAMVTADSKYCYGPQGR-----SPYIPPHAALCLEVTLKTAV 117

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score =  181 bits (462), Expect = 3e-55
 Identities = 58/105 (55%), Positives = 68/105 (64%), Gaps = 1/105 (0%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GLK + + EG G      G  V VHYTG L DG +FDSS+DR+ PF F LG G VIKGWD
Sbjct: 29  GLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWD 87

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G++ MK G     TIPP+L YG  G+   IPPNATL F+VELL 
Sbjct: 88  EGVQGMKVGGVRRLTIPPQLGYGARGAGGVIPPNATLVFEVELLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 83.1 bits (206), Expect = 3e-19
 Identities = 37/123 (30%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQL 317
             ++ +T +  +  + L EG G      G  V V   G L DG  F     +        
Sbjct: 19  SHMTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DP 72

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
           F F      VI G D  V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVE
Sbjct: 73  FAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAG---GVIPPNATLVFEVE 129

Query: 378 LVS 380
           L+ 
Sbjct: 130 LLD 132

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A* Length = 133

 Score = 62.3 bits (152), Expect = 5e-12
 Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 10/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPT 207
           + G+  + L EG      +    V V+Y   L DG        + D   F +  G     
Sbjct: 27  ESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKG 85

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
             + V+ MK G    L + PQ G+G +G   +G  G +PPNATL   +EL+ 
Sbjct: 86  WDEGVQGMKVGGVRRLTIPPQLGYGARG---AG--GVIPPNATLVFEVELLD 132

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  177 bits (451), Expect = 3e-53
 Identities = 40/153 (26%), Positives = 71/153 (46%), Gaps = 5/153 (3%)

Query: 1   MDEDFDIPAANEMDADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVE 60
             E   +   + +       +     KV  E E+ ++ + K+++KEG G   P       
Sbjct: 13  DQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCF 71

Query: 61  VHYTGTLLDGT-QFDSSRDRSTPFKFTLG-QGNVIKGWDIGIKTMKKGENAVFTIPPELA 118
           +HY     +   +F+ +     P +  LG +   + G  IG+ +MK GE A+  +  ELA
Sbjct: 72  LHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVASMKSGERALVHVGWELA 131

Query: 119 YGESG--SPPTIPPNATLQFDVELLSWTSVKDI 149
           YG+ G  S P +PP A L ++VE++ +   K+ 
Sbjct: 132 YGKEGNFSFPNVPPMADLLYEVEVIGFDETKEG 164

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score =  109 bits (275), Expect = 3e-28
 Identities = 50/198 (25%), Positives = 80/198 (40%), Gaps = 32/198 (16%)

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDD 269
           +        E  ++         E  +     EG VPP    +                D
Sbjct: 6   EHQTQTHDQESEIVTEGSAVVHSEPSQ-----EGNVPPKVDSEA------------EVLD 48

Query: 270 KKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT-VF---VKKGHSEEEQLFEFK-TDE 324
           +KV K+I+KEG G  +P++ +   +      ++    F     +      Q  E     E
Sbjct: 49  EKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQ-----QPIELVLGKE 102

Query: 325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
           ++ + GL   V +MK  E AL+ +  E A+G  E       VPP + + YEVE++ F++ 
Sbjct: 103 KKELAGLAIGVASMKSGERALVHVGWELAYG-KEGNFSFPNVPPMADLLYEVEVIGFDET 161

Query: 385 KES---WDMNTEEKIEAA 399
           KE     DM  EE+I AA
Sbjct: 162 KEGKARSDMTVEERIGAA 179

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana} Length = 180

 Score = 87.2 bits (216), Expect = 4e-20
 Identities = 35/174 (20%), Positives = 66/174 (37%), Gaps = 22/174 (12%)

Query: 101 KTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKIL 160
                 E+ + T    + + E      +PP    + +V             D  + K+I+
Sbjct: 9   TQTHDQESEIVTEGSAVVHSEPSQEGNVPPKVDSEAEV------------LDEKVSKQII 56

Query: 161 KEGEKWENPKDLDEVLVNYEARLEDGMVV-----GKADGVEFTV-KDGHFCPTLAKAVKT 214
           KEG     P       ++Y A  ++          +   +E  + K+      LA  V +
Sbjct: 57  KEGH-GSKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGLAIGVAS 115

Query: 215 MKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITD 268
           MK GE+ L+ V  +  +G++G   + +   VPP A L   +E++ +    E   
Sbjct: 116 MKSGERALVHVGWELAYGKEG---NFSFPNVPPMADLLYEVEVIGFDETKEGKA 166

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score =  176 bits (449), Expect = 2e-52
 Identities = 61/128 (47%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 15  ADMDLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFD 74
            D D+ +       G        GLK + + EG G      G  V VHYTG L DG +FD
Sbjct: 82  EDNDIIEAHREQIGGSTVVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFD 140

Query: 75  SSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATL 134
           SS+DR+ PF F LG G VIKGWD G++ MK G     TIPP+L YG  G+   IPPNATL
Sbjct: 141 SSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAAGVIPPNATL 200

Query: 135 QFDVELLS 142
            F+VELL 
Sbjct: 201 VFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 87.2 bits (216), Expect = 6e-20
 Identities = 44/168 (26%), Positives = 69/168 (41%), Gaps = 14/168 (8%)

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKK 275
           K+  K + +++  Y         +  +  +  N  ++   E +   TV  +T +  +  +
Sbjct: 52  KRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDIIEAHREQIGGSTV--VTTESGLKYE 109

Query: 276 ILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGLD 332
            L EG G      G  V V   G L DG  F     +        F F      VI G D
Sbjct: 110 DLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRN-----DPFAFVLGGGMVIKGWD 163

Query: 333 RAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             V  MK   V  LTI P+  +G+  +     V+PPN+T+ +EVEL+ 
Sbjct: 164 EGVQGMKVGGVRRLTIPPQLGYGARGAA---GVIPPNATLVFEVELLD 208

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 1euv_B 3v60_A 3v61_A 3v62_A* Length = 209

 Score = 75.6 bits (186), Expect = 8e-16
 Identities = 38/187 (20%), Positives = 68/187 (36%), Gaps = 11/187 (5%)

Query: 78  DRSTPFKFTLGQGNVIKGWDIGIKTM-KKGENAVFTIPPELAYGESGSPPTIPPNATLQF 136
           D S+   F + +   ++           K  +++  +   +      +P  +        
Sbjct: 28  DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQTPEDLDMEDNDII 87

Query: 137 DVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKA 192
           +           +  + G+  + L EG   E  +    V V+Y   L DG        + 
Sbjct: 88  EAHREQIGGSTVVTTESGLKYEDLTEGSGAE-ARAGQTVSVHYTGWLTDGQKFDSSKDRN 146

Query: 193 DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQ 252
           D   F +  G       + V+ MK G    L + PQ G+G +G +     G +PPNATL 
Sbjct: 147 DPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTIPPQLGYGARGAA-----GVIPPNATLV 201

Query: 253 IALELVS 259
             +EL+ 
Sbjct: 202 FEVELLD 208

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  174 bits (443), Expect = 3e-52
 Identities = 47/141 (33%), Positives = 66/141 (46%), Gaps = 8/141 (5%)

Query: 10  ANEMDADMDLPDDAPMMKVGEEKEI-GNQGLKKKLVKEGEG-WDTPENGDEVEVHYTGTL 67
           A E  A M+ P+ AP     E  +I GN  L+KK +  G      P  G  V VH   +L
Sbjct: 16  AREFLAAME-PEPAPAPAPEEWLDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSL 74

Query: 68  LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGS-PP 126
            +GT+            FTLG  +VI+  D+ +  M  GE A+ T   +  YG  GS  P
Sbjct: 75  ENGTRVQEEP----ELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSKYCYGPQGSRSP 130

Query: 127 TIPPNATLQFDVELLSWTSVK 147
            IPP+A L  +V L +   ++
Sbjct: 131 YIPPHAALCLEVTLKTAVDLE 151

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score =  113 bits (284), Expect = 1e-29
 Identities = 44/170 (25%), Positives = 68/170 (40%), Gaps = 14/170 (8%)

Query: 223 LAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEG-D 281
           +   P     + G  A     A+ P      A E   W    +I  +  + KK L  G  
Sbjct: 1   MGQPPAEEAEQPGALAREFLAAMEPEPAPAPAPE--EWL---DILGNGLLRKKTLVPGPP 55

Query: 282 GFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKN 341
           G  RP +G VV V L   L++GT        +EE    F   +  VI  LD +V  M   
Sbjct: 56  GSSRPVKGQVVTVHLQTSLENGTRV------QEEPELVFTLGDCDVIQALDLSVPLMDVG 109

Query: 342 EVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
           E A++T   +Y +G   S+     +PP++ +  EV L +    +     +
Sbjct: 110 ETAMVTADSKYCYGPQGSRS--PYIPPHAALCLEVTLKTAVDLEHHHHHH 157

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens} Length = 157

 Score = 93.3 bits (232), Expect = 1e-22
 Identities = 30/119 (25%), Positives = 50/119 (42%), Gaps = 5/119 (4%)

Query: 148 DICKDGGIIKKILKEG-EKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCP 206
           DI  +G + KK L  G      P     V V+ +  LE+G  V +   + FT+ D     
Sbjct: 38  DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQ 97

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
            L  +V  M  GE  ++    +Y +G +G         +PP+A L + + L +   +  
Sbjct: 98  ALDLSVPLMDVGETAMVTADSKYCYGPQG----SRSPYIPPHAALCLEVTLKTAVDLEH 152

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score =  172 bits (439), Expect = 1e-51
 Identities = 57/148 (38%), Positives = 78/148 (52%), Gaps = 19/148 (12%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F   +  VIKGW 
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNE--VIKGWT 95

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELIS--------------- 140

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLED 185
             +K+G K    +++DE+L   E   ED
Sbjct: 141 --IKDGGKGRTAEEVDEILRKAEEDRED 166

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 75.5 bits (186), Expect = 3e-16
 Identities = 30/134 (22%), Positives = 60/134 (44%), Gaps = 13/134 (9%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           + +  G G   P      +V   G+L+DGTVF    ++G     +   F+ +  +VI G 
Sbjct: 42  QRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERG-----KPTTFRPN--EVIKGW 94

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMN 391
             A+  M++ +   L I  + A+G         ++PP S + ++VEL+S +   +     
Sbjct: 95  TEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDGGKGRTAE 151

Query: 392 TEEKIEAAGKKKEQ 405
             ++I    ++  +
Sbjct: 152 EVDEILRKAEEDRE 165

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1 Length = 167

 Score = 63.2 bits (154), Expect = 6e-12
 Identities = 27/136 (19%), Positives = 56/136 (41%), Gaps = 17/136 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ + +  G     P   D+  V+Y  RL DG V      +     F            
Sbjct: 38  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRP--NEVIKGWT 95

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS------WKTV 263
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S       +T 
Sbjct: 96  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 150

Query: 264 SEITDDKKVIKKILKE 279
            E+ +  +  ++  ++
Sbjct: 151 EEVDEILRKAEEDRED 166

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score =  171 bits (435), Expect = 2e-51
 Identities = 46/128 (35%), Positives = 56/128 (43%), Gaps = 12/128 (9%)

Query: 27  KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFT 86
               E  +   GL       G G      G  ++ HY G L +G  FDSS +R  P  F 
Sbjct: 2   TTSCEFSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFR 60

Query: 87  LGQGNVIKGWDIGI------KTMKKGENAVFTIPPELAYGESG-----SPPTIPPNATLQ 135
           +G G VIKGWD GI        M  G      IPPELAYG+ G         IPP + L 
Sbjct: 61  IGVGEVIKGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLL 120

Query: 136 FDVELLSW 143
           FD+E +  
Sbjct: 121 FDIEYIGK 128

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 82.4 bits (204), Expect = 5e-19
 Identities = 28/120 (23%), Positives = 51/120 (42%), Gaps = 17/120 (14%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVI 328
           +       G G     +G ++K   +GKL++G VF     +G     +   F+    +VI
Sbjct: 14  LAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRG-----KPLTFRIGVGEVI 67

Query: 329 DGLDRAVI------TMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELVS 380
            G D+ ++       M       L I PE A+G   A  +    ++PP S + +++E + 
Sbjct: 68  KGWDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIG 127

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A Length = 129

 Score = 67.4 bits (165), Expect = 9e-14
 Identities = 21/119 (17%), Positives = 40/119 (33%), Gaps = 11/119 (9%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP- 206
             G+       G           +  +Y  +LE+G V      +   + F +  G     
Sbjct: 11  PSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKG 69

Query: 207 -----TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW 260
                  +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +  
Sbjct: 70  WDQGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK 128

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score =  165 bits (419), Expect = 4e-49
 Identities = 41/109 (37%), Positives = 59/109 (54%), Gaps = 5/109 (4%)

Query: 38  GLKKKLVKEGEGW-DTPENGDEVEVHYTGTL-LDGTQFDSS--RDRSTPFKFTLGQGNVI 93
            +K +++++        + GD + VHY G L  DG+ F S+   +   P  FTLG    +
Sbjct: 13  EVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEAL 72

Query: 94  KGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           KGWD G+K M  GE     IPP L YG+ G    IPP +TL F+++LL 
Sbjct: 73  KGWDQGLKGMCVGEKRKLIIPPALGYGKEGKGK-IPPESTLIFNIDLLE 120

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 78.9 bits (195), Expect = 8e-18
 Identities = 25/126 (19%), Positives = 53/126 (42%), Gaps = 6/126 (4%)

Query: 260 WKTVSEITDDKKVIKKILKEGDGFER-PNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQL 317
           ++++  +  + +V  ++L++     R    G ++ V   G L+ DG++F         Q 
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 318 FEFKTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVE 377
             F     + + G D+ +  M   E   L I P   +G     +    +PP ST+ + ++
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGK----EGKGKIPPESTLIFNID 117

Query: 378 LVSFEK 383
           L+    
Sbjct: 118 LLEIRN 123

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens} Length = 125

 Score = 58.1 bits (141), Expect = 1e-10
 Identities = 32/129 (24%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 143 WTSVKDICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLE-DGMV----VGKADG-- 194
           + S+  +  +  +  ++L++        K  D +LV+YE  LE DG +        +G  
Sbjct: 2   FQSMGALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQP 61

Query: 195 VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIA 254
           + FT+          + +K M  GEK  L + P  G+G++GK      G +PP +TL   
Sbjct: 62  IWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEGK------GKIPPESTLIFN 115

Query: 255 LELVSWKTV 263
           ++L+  +  
Sbjct: 116 IDLLEIRNG 124

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score =  171 bits (435), Expect = 2e-48
 Identities = 54/173 (31%), Positives = 93/173 (53%), Gaps = 1/173 (0%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
                  F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E   
Sbjct: 198 SGDSHPDFPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR 257

Query: 434 SFGDEEKKQA-KALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY 492
           +  ++      + + ++C LN  ACKLK+ D++ A   C + L++D  N KALYRRAQ +
Sbjct: 258 AAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGW 317

Query: 493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA 545
             + + D A  D+KKA EI P+++ ++ E   +K+K+K    KE   Y  MFA
Sbjct: 318 QGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA 370

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score =  141 bits (358), Expect = 3e-39
 Identities = 41/105 (39%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F + Q  VI GW 
Sbjct: 107 GLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQ--VIPGWT 163

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      +P  LAYG       I PN TL F + L+S
Sbjct: 164 EALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLIS 208

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 71.6 bits (176), Expect = 2e-14
 Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 14/112 (12%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           K++  G+G  +P +   V V+  G+L DGTVF    K G     +   F+    QVI G 
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTG-----KPATFQVS--QVIPGW 162

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 163 TEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 211

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A* Length = 213

 Score = 55.8 bits (135), Expect = 4e-09
 Identities = 27/106 (25%), Positives = 38/106 (35%), Gaps = 12/106 (11%)

Query: 158 KILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLAKAVK 213
           K++  G     P   D V V Y  RL DG V            F V      P   +A++
Sbjct: 111 KVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQ 167

Query: 214 TMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
            M  G    + V     +G +        G + PN TL   + L+S
Sbjct: 168 LMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLIS 208

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score =  137 bits (348), Expect = 9e-39
 Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 12/141 (8%)

Query: 389 DMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKV 448
                    +  + +++GN LFK G Y  A   Y +A   +  D +  D         + 
Sbjct: 18  PRPATPGASSVEQLRKEGNELFKCGDYGGALAAYTQA---LGLDATPQD---------QA 65

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
             + N AAC LKL+DY +AE   +K ++ D  +VKALYRR+QA  ++  LD A  D+++ 
Sbjct: 66  VLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125

Query: 509 LEIDPDNRDVKLEYKTLKEKM 529
           + ++P N+  +   + +    
Sbjct: 126 VSLEPKNKVFQEALRNISGPS 146

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score =  137 bits (347), Expect = 1e-37
 Identities = 53/105 (50%), Positives = 69/105 (65%), Gaps = 4/105 (3%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI GW 
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPGWT 178

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
            G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL 
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLD 222

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 67.9 bits (166), Expect = 4e-13
 Identities = 34/111 (30%), Positives = 51/111 (45%), Gaps = 15/111 (13%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVF---VKKGHSEEEQLFEFKTDEEQVIDGL 331
           ++++ G G E P +   V V   G L DG  F     +G     +   F+ D   VI G 
Sbjct: 126 QVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRG-----EPLSFRLD--GVIPGW 177

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
              +  +KK     L I PE A+G A        +PPNST+ ++VEL+  +
Sbjct: 178 TEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLDVK 224

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A Length = 224

 Score = 56.7 bits (137), Expect = 3e-09
 Identities = 33/112 (29%), Positives = 58/112 (51%), Gaps = 13/112 (11%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCPTLA 209
           G++ ++++ G+  E PKD D V+VNY+  L DG        + + + F +      P   
Sbjct: 122 GLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWT 178

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + +K +KKG K+ L + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 179 EGLKNIKKGGKIKLVIPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 224

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score =  136 bits (344), Expect = 3e-37
 Identities = 36/105 (34%), Positives = 47/105 (44%), Gaps = 6/105 (5%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G+    +  G G   P+    VEV Y G L DG  FD S     P  F L    VI GW 
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQ---PQWFRLDS--VISGWT 171

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
             ++ M  G      IP + AYG  G+   I P   L F++EL++
Sbjct: 172 SALQNMPTGAKWRLVIPSDQAYGAEGAGDLIDPFTPLVFEIELIA 216

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 72.1 bits (177), Expect = 1e-14
 Identities = 27/109 (24%), Positives = 50/109 (45%), Gaps = 11/109 (10%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRA 334
             L  G G  +P+    V+V+ +G+L DG +F +       Q   F+ D   VI G   A
Sbjct: 122 TELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQST-----QPQWFRLD--SVISGWTSA 173

Query: 335 VITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           +  M       L I  + A+G+   +    ++ P + + +E+EL++  +
Sbjct: 174 LQNMPTGAKWRLVIPSDQAYGA---EGAGDLIDPFTPLVFEIELIAVSQ 219

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} Length = 219

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAV 212
           GI+   L  G     P     V V Y  RL DG +  ++     F +           A+
Sbjct: 118 GILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRL--DSVISGWTSAL 174

Query: 213 KTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
           + M  G K  L +     +G +G         + P   L   +EL++
Sbjct: 175 QNMPTGAKWRLVIPSDQAYGAEGAG-----DLIDPFTPLVFEIELIA 216

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  113 bits (285), Expect = 1e-29
 Identities = 35/147 (23%), Positives = 65/147 (44%), Gaps = 15/147 (10%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA  Y  A K Y +A   IE +          A        
Sbjct: 6   ADGALKRAEELKTQANDYFKAKDYENAIKFYSQA---IELN-------PSNAIYYG---- 51

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
            N +   L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++
Sbjct: 52  -NRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 110

Query: 512 DPDNRDVKLEYKTLKEKMKEYNKKEAK 538
            P ++D K++Y+   + +K+   + A 
Sbjct: 111 KPHDKDAKMKYQECNKIVKQKAFERAI 137

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  109 bits (274), Expect = 2e-28
 Identities = 41/142 (28%), Positives = 58/142 (40%), Gaps = 15/142 (10%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           + +EE    A + K +GN   K   +  A   Y KA   IE + +        A      
Sbjct: 3   LGSEEDSAEAERLKTEGNEQMKVENFEAAVHFYGKA---IELNPAN-------AVYF--- 49

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
              N AA   KL +Y  A + C + + +D    KA  R   A   +     A    KKAL
Sbjct: 50  --CNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107

Query: 510 EIDPDNRDVKLEYKTLKEKMKE 531
           E+DPDN   K   K  + K++E
Sbjct: 108 ELDPDNETYKSNLKIAELKLRE 129

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  105 bits (265), Expect = 3e-27
 Identities = 38/149 (25%), Positives = 63/149 (42%), Gaps = 18/149 (12%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
             K  +A + KEQGN LF   KY  A+  Y +A+        +                 
Sbjct: 3   HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YT 47

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N A C LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  + 
Sbjct: 48  NRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

Query: 513 PDNRDVKLEY---KTLKEKMKEYNKKEAK 538
            + R    +         K K +N  E +
Sbjct: 108 KEQRLNFGDDIPSALRIAKKKRWNSIEER 136

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  105 bits (265), Expect = 3e-27
 Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 15/146 (10%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
                 ++    + A   K +GN  F+ G Y +A K Y +A   I+ +        K AK
Sbjct: 2   GHHHHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEA---IKRN-------PKDAK 51

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
                   N AAC  KL +++ A K C + + L+   +K   R+A A   M D   A   
Sbjct: 52  LYS-----NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDV 106

Query: 505 IKKALEIDPDNRDVKLEYKTLKEKMK 530
            +KAL++D   ++    Y+       
Sbjct: 107 YQKALDLDSSCKEAADGYQRCMMAQY 132

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  103 bits (260), Expect = 1e-26
 Identities = 28/133 (21%), Positives = 53/133 (39%), Gaps = 15/133 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +E   + KE+GN     G    A + Y +A   I+ D                    N +
Sbjct: 1   MEQVNELKEKGNKALSVGNIDDALQCYSEA---IKLD-------PHNHVLYS-----NRS 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           A   K  DY++A +   K +DL     K   R+A A   +   + A+   ++ L+ + +N
Sbjct: 46  AAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANN 105

Query: 516 RDVKLEYKTLKEK 528
             +K   + ++ +
Sbjct: 106 PQLKEGLQNMEAR 118

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  103 bits (259), Expect = 1e-26
 Identities = 35/130 (26%), Positives = 60/130 (46%), Gaps = 15/130 (11%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E A ++K +GN  FK G Y  A + Y +A   ++ D        + A         N AA
Sbjct: 11  ELAQEEKNKGNEYFKKGDYPTAMRHYNEA---VKRD-------PENAILYS-----NRAA 55

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
           C  KL ++++A   C   + LDS+ +K   R+A   + M +   A+   + AL++DP N 
Sbjct: 56  CLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNE 115

Query: 517 DVKLEYKTLK 526
           + +   +   
Sbjct: 116 EAREGVRNCL 125

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  100 bits (252), Expect = 1e-25
 Identities = 29/135 (21%), Positives = 49/135 (36%), Gaps = 17/135 (12%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A + + +G   F    +  A K Y +    I+          + A+        N AA  
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEM---IKRA-------PEDARGYS-----NRAAAL 48

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            KL  + +A   C K ++ D   V+A  R+A A I + +   A   +  A   D +  + 
Sbjct: 49  AKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNG 108

Query: 519 --KLEYKTLKEKMKE 531
               E   L  K  +
Sbjct: 109 SSAREIDQLYYKASQ 123

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  101 bits (253), Expect = 3e-25
 Identities = 30/167 (17%), Positives = 57/167 (34%), Gaps = 19/167 (11%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
            +      + K K +GN      +Y++A   Y +A   +                     
Sbjct: 3   RSMAPTPESDKLKSEGNAAMARKEYSKAIDLYTQA---LSIAP-------------ANPI 46

Query: 451 NLNN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
            L+N AA       +++A +       +D +  KA  R   A   MAD   A+   +K +
Sbjct: 47  YLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGI 106

Query: 510 EIDPDNRD--VKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSDLD 554
           E + +     +K   +T K K++E N+       ++           
Sbjct: 107 EAEGNGGSDAMKRGLETTKRKIEEANRGAEPPADDVDDAAGASRGAG 153

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 96.5 bits (240), Expect = 2e-22
 Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 15/141 (10%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+        +                 N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVY---------------YTNRALC 47

Query: 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 518 VKLEYKTLKEKMKEYNKKEAK 538
              +      ++ +  +  + 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSI 128

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 97.3 bits (243), Expect = 3e-22
 Identities = 30/141 (21%), Positives = 66/141 (46%), Gaps = 11/141 (7%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S  +      ++      +  
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSVAEY---TVRSK---ERI-- 278

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             C  K +   +A ++C++VL ++  NV AL  RA+AY+     D A  D + A E + +
Sbjct: 279 CHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNEN 338

Query: 515 NRDVKLEYKTLKEKMKEYNKK 535
           ++ ++   +  +  +K+  K+
Sbjct: 339 DQQIREGLEKAQRLLKQSQKR 359

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 4e-17
 Identities = 31/125 (24%), Positives = 46/125 (36%), Gaps = 15/125 (12%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
            E G  L  AG+ A A  ++  A   ++ D            A         A   L + 
Sbjct: 7   LELGKKLLAAGQLADALSQFHAA---VDGDPDN-------YIAY-----YRRATVFLAMG 51

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
             K A    TKV+ L      A  +R    ++   LD AE D KK L+ +P  ++ K   
Sbjct: 52  KSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAE 111

Query: 523 KTLKE 527
             L +
Sbjct: 112 SQLVK 116

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 77.7 bits (192), Expect = 1e-15
 Identities = 28/154 (18%), Positives = 55/154 (35%), Gaps = 21/154 (13%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           K +   + + Q    F    Y  A    +K    +E            A+          
Sbjct: 116 KADEMQRLRSQALDAFDGADYTAAITFLDKI---LEVCVWD-------AELR-----ELR 160

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A C +K  + ++A         L S N +A Y+ +  Y Q+ D +L+  ++++ L++D D
Sbjct: 161 AECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 220

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548
           ++     YK +K+  K               +  
Sbjct: 221 HKRCFAHYKQVKKLNKLIES------AEELIRDG 248

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 72.7 bits (179), Expect = 5e-14
 Identities = 26/112 (23%), Positives = 49/112 (43%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+ L K GK   A   ++K +K    +    + E +  KA ++    + A       DY 
Sbjct: 78  GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYT 137

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            A     K+L++   + +    RA+ +I+  +   A  D+K A ++  DN +
Sbjct: 138 AAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE 189

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 53.0 bits (128), Expect = 1e-07
 Identities = 26/144 (18%), Positives = 36/144 (25%), Gaps = 30/144 (20%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  GK   A     K    I     F         A      L      LK     
Sbjct: 44  ATVFLAMGKSKAALPDLTKV---IALKMDF-------TAAR-----LQRGHLLLKQGKLD 88

Query: 466 QAEKLCTKVLDLDSRNVKA---------------LYRRAQAYIQMADLDLAEFDIKKALE 510
           +AE    KVL  +    +                L  +A      AD   A   + K LE
Sbjct: 89  EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNK 534
           +   + +++        K  E  K
Sbjct: 149 VCVWDAELRELRAECFIKEGEPRK 172

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 87.7 bits (218), Expect = 7e-21
 Identities = 32/146 (21%), Positives = 57/146 (39%), Gaps = 25/146 (17%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + A K+KE GN  +K   +  A K Y+KA +    + ++                + N A
Sbjct: 2   KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTY----------------ITNQA 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKA 508
           A   +  DY +  +LC K +++   N        KA  R   +Y +      A     K+
Sbjct: 46  AVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105

Query: 509 LEIDPDNRDVKLEYKTLKEKMKEYNK 534
           L       DV  + +  ++ +KE  +
Sbjct: 106 LAEHRTP-DVLKKCQQAEKILKEQER 130

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 31/145 (21%), Positives = 64/145 (44%), Gaps = 11/145 (7%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           +++   K  E    L + G+Y  A+ +YE     ++ + S             V      
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESV---MKTEPSI--------AEYTVRSKERI 301

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             C  K +   +A ++C++VL ++  NV AL  RA+AY+     D A  D + A E + +
Sbjct: 302 CHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNEN 361

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++ ++   +  +  +K+  K++   
Sbjct: 362 DQQIREGLEKAQRLLKQSQKRDYYK 386

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 89.0 bits (221), Expect = 5e-19
 Identities = 32/146 (21%), Positives = 51/146 (34%), Gaps = 19/146 (13%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
            + +    K  E G  L  AG+ A A  ++  A   ++ D                    
Sbjct: 20  FQSMADVEKHLELGKKLLAAGQLADALSQFHAA---VDGDPDN-------------YIAY 63

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
              A   L +   K A    TKV+ L      A  +R    ++   LD AE D KK L+ 
Sbjct: 64  YRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS 123

Query: 512 DPDNRDVKLEYKTLK--EKMKEYNKK 535
           +P   + K     L   ++M+    +
Sbjct: 124 NPSENEEKEAQSQLIKSDEMQRLRSQ 149

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 79.7 bits (197), Expect = 4e-16
 Identities = 29/145 (20%), Positives = 57/145 (39%), Gaps = 15/145 (10%)

Query: 395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN 454
           K +   + + Q    F +G Y  A    +K    +E            A+          
Sbjct: 139 KSDEMQRLRSQALNAFGSGDYTAAIAFLDKI---LEVCVWD-------AELR-----ELR 183

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A C +K  + ++A         L + N +A Y+ +  Y Q+ D +L+  ++++ L++D D
Sbjct: 184 AECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD 243

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++     YK +K+  K     E   
Sbjct: 244 HKRCFAHYKQVKKLNKLIESAEELI 268

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 74.3 bits (183), Expect = 2e-14
 Identities = 24/112 (21%), Positives = 49/112 (43%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+ L K GK   A   ++K +K    +    + + +  K+ ++    + A       DY 
Sbjct: 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYT 160

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            A     K+L++   + +    RA+ +I+  +   A  D+K A ++  DN +
Sbjct: 161 AAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTE 212

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 22/110 (20%), Positives = 32/110 (29%), Gaps = 26/110 (23%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L     Y ++    EK                +  K L            L      
Sbjct: 10  GVDLGTENLYFQSMADVEKH--------------LELGKKL------------LAAGQLA 43

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A       +D D  N  A YRRA  ++ M     A  D+ K +++  D 
Sbjct: 44  DALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDF 93

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score = 93.6 bits (233), Expect = 2e-20
 Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 15/136 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           ++ A + K Q N  FKA  Y  A K Y +A++    +  +                 N +
Sbjct: 3   LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIY---------------YGNRS 47

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
              L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++ P +
Sbjct: 48  LAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHD 107

Query: 516 RDVKLEYKTLKEKMKE 531
           +D K++Y+   + +K+
Sbjct: 108 KDAKMKYQECNKIVKQ 123

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 82.7 bits (205), Expect = 3e-19
 Identities = 30/136 (22%), Positives = 54/136 (39%), Gaps = 24/136 (17%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
           +    +AA  +K+ GN  +K   + +A   Y+KA++    + +F                
Sbjct: 1   SNAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITF---------------- 44

Query: 452 LNN-AACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEF 503
            NN AA   + K + +  + C K +++            KA+ R   A+ +  DL LA  
Sbjct: 45  YNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQ 104

Query: 504 DIKKALEIDPDNRDVK 519
              ++L    D   VK
Sbjct: 105 WFHRSLSEFRDPELVK 120

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 5/86 (5%)

Query: 437 DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA 496
           +     A A K   +L NAA   K KD+++A     K ++LD  N+     +A  Y +  
Sbjct: 2   NAMTDAAIAEK---DLGNAA--YKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEK 56

Query: 497 DLDLAEFDIKKALEIDPDNRDVKLEY 522
                    +KA+E+  + R      
Sbjct: 57  KFAECVQFCEKAVEVGRETRADYKLI 82

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 83.9 bits (208), Expect = 4e-19
 Identities = 21/68 (30%), Positives = 38/68 (55%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
           ++   V VH+T  L DGT  +S+R+   P  F LG  ++ +G +  +  +K G+   F++
Sbjct: 26  QSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSL 85

Query: 114 PPELAYGE 121
            P+ A+G 
Sbjct: 86  EPDAAFGV 93

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
             + V V    KL DGT           +   F+  +  + +GL++ ++ +K  +    +
Sbjct: 27  SNSAVLVHFTLKLDDGTTAEST--RNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFS 84

Query: 348 IAPEYAFG 355
           + P+ AFG
Sbjct: 85  LEPDAAFG 92

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli} Length = 169

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 173 DEVLVNYEARLEDGMVV----GKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ 228
             VLV++  +L+DG              F + D      L + +  +K G+K   +++P 
Sbjct: 29  SAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPD 88

Query: 229 YGFGE 233
             FG 
Sbjct: 89  AAFGV 93

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.8 bits (203), Expect = 1e-17
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 21/161 (13%)

Query: 377 ELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG 436
           +L + EKE +  +       E A + + +G   F    +  A K Y +    I+      
Sbjct: 117 KLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEM---IKRAPED- 172

Query: 437 DEEKKQAKALKVACNLNN-AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495
                 A+        +N AA   KL  + +A   C K ++ D   V+A  R+A A I +
Sbjct: 173 ------ARGY------SNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 220

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            +   A   +  A   D +         + +E  + Y K  
Sbjct: 221 KEYASALETLDAARTKDAEVN----NGSSAREIDQLYYKAS 257

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 27/165 (16%), Positives = 61/165 (36%), Gaps = 31/165 (18%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A K+K +GN  +KA ++  A + Y KA    E          K    L      N AA +
Sbjct: 5   ADKEKAEGNKFYKARQFDEAIEHYNKA---WELH--------KDITYL-----NNRAAAE 48

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---- 514
            +  +Y+ A       ++            ++++ ++ +      D+KK +E        
Sbjct: 49  YEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTE 108

Query: 515 --NRDVKLEYKTLKEKMKEYNK------KEAKFY---GNMFAKMN 548
               D+  + +  ++++K+         ++A+     G  +   +
Sbjct: 109 HRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKS 153

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 56.8 bits (138), Expect = 4e-09
 Identities = 14/110 (12%), Positives = 31/110 (28%), Gaps = 16/110 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +  + G         +K    IEY      E                A    KL++ +
Sbjct: 79  SKSFARIGNAYHKLGDLKKT---IEYYQKSLTEH-------------RTADILTKLRNAE 122

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +  K       ++    +      + Y   +D   A     + ++  P++
Sbjct: 123 KELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED 172

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 77.4 bits (191), Expect = 2e-17
 Identities = 29/125 (23%), Positives = 46/125 (36%), Gaps = 17/125 (13%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNA 455
           +    K+KEQGN+LFK G Y  A   Y++    I           +           N A
Sbjct: 1   MSQFEKQKEQGNSLFKQGLYREAVHCYDQL---ITAQ-------PQNPVGYS-----NKA 45

Query: 456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL-EIDPD 514
              +KL +Y QA ++C + L   S       R    Y ++     A   ++  + E+D  
Sbjct: 46  MALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY-RLELAQGAVGSVQIPVVEVDEL 104

Query: 515 NRDVK 519
                
Sbjct: 105 PEGYD 109

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 53.9 bits (130), Expect = 3e-09
 Identities = 12/105 (11%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 441 KQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL 500
            Q +  K      N+    K   Y++A     +++    +N      +A A I++ +   
Sbjct: 2   SQFEKQK---EQGNSL--FKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQ 56

Query: 501 AEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKF 539
           A    ++ L              ++   +  +  +        + 
Sbjct: 57  AIQMCQQGLRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEV 101

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 75.1 bits (185), Expect = 3e-16
 Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 13/81 (16%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRST-------------PFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M+ G+     IP E AYG 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGN 83

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1 Length = 151

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 11/79 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAVI 336
           +G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV+
Sbjct: 4   KGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVL 63

Query: 337 TMKKNEVALLTIAPEYAFG 355
            M+  +   + I  E A+G
Sbjct: 64  DMEVGDEKTVKIPAEKAYG 82

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 75.4 bits (186), Expect = 3e-16
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli} Length = 171

 Score = 42.3 bits (100), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 79.4 bits (196), Expect = 8e-16
 Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 16/194 (8%)

Query: 346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQ 405
                E   G +   +        +   +      FE++ +  + + + K + A   +  
Sbjct: 184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F       A +  +KA++              +  +      +  A       D  
Sbjct: 244 GIFKFLKNDPLGAHEDIKKAIEL-----------FPRVNSY-----IYMALIMADRNDST 287

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +      K L LDS N    Y R Q    + + D A  D  KA E+DP+N    ++   L
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACL 347

Query: 526 KEKMKEYNKKEAKF 539
             +  +++  E  F
Sbjct: 348 AYRENKFDDCETLF 361

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 77.1 bits (190), Expect = 3e-15
 Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 17/145 (11%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           EK + A   K++GN  F+  KY  A K Y  A++            K+           N
Sbjct: 1   EKDKYALALKDKGNQFFRNKKYDDAIKYYNWALEL-----------KEDPVFY-----SN 44

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKK-ALEID 512
            +AC + + D K+  ++ TK L+L     K L RRA A   +     A FD+   +L  D
Sbjct: 45  LSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGD 104

Query: 513 PDNRDVKLEYKTLKEKMKEYNKKEA 537
            ++  ++   +    K      KE 
Sbjct: 105 FNDASIEPMLERNLNKQAMSKLKEK 129

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 23/138 (16%), Positives = 50/138 (36%), Gaps = 11/138 (7%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L     + +A K+Y+ A   IE +          A  +              ++++ 
Sbjct: 379 AEILTDKNDFDKALKQYDLA---IELENKLDGIYVGIAPLVG---KATLLTRNPTVENFI 432

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL----- 520
           +A  L  K   LD R+ +A    AQ  +Q  D+D A    +++ ++     +        
Sbjct: 433 EATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFA 492

Query: 521 EYKTLKEKMKEYNKKEAK 538
           E   ++++++       K
Sbjct: 493 EAAKVQQRIRSDPVLAKK 510

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 3e-10
 Identities = 18/110 (16%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F    Y +A K ++KA    E D        + A                +   + 
Sbjct: 311 GQMNFILQNYDQAGKDFDKA---KELDPENIFPYIQLACLAY------------RENKFD 355

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             E L ++         +     A+      D D A      A+E++   
Sbjct: 356 DCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKL 405

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 20/165 (12%), Positives = 46/165 (27%), Gaps = 15/165 (9%)

Query: 391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVAC 450
              +  +          + F   K       Y+++    E D    +      K    + 
Sbjct: 149 KERKDKQENLPSVTSMASFFGIFKPELTFANYDES---NEADKELMNGLSNLYKRSPESY 205

Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           +  + +     + +++      +   L  +   +L           D   A  DIKKA+E
Sbjct: 206 DKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIE 265

Query: 511 IDPD-----NR-DVKLEYKTLKEKMKEYNK------KEAKFYGNM 543
           + P          +  +     E    ++K        +  Y + 
Sbjct: 266 LFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHR 310

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 75.2 bits (185), Expect = 9e-16
 Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 1/138 (0%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKY-IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
           ++ +   +AG+  +A   + + +   I+    +      +   +        A    K +
Sbjct: 9   QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
           +Y +A     ++L     NV  L   A+  +       A    +K L+++ DN    +  
Sbjct: 69  NYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFL 128

Query: 523 KTLKEKMKEYNKKEAKFY 540
                   E  KK+ +  
Sbjct: 129 GNYYYLTAEQEKKKLETD 146

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 22/129 (17%), Positives = 41/129 (31%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G+   A + YEK ++           E     A      L N    L  +  K
Sbjct: 95  AEMQVCRGQEKDALRMYEKILQL----------EADNLAAN---IFLGNY-YYLTAEQEK 140

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +  +   K L   ++   A YR   + +     + A   ++K +   P   + +     +
Sbjct: 141 KKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKI 199

Query: 526 KEKMKEYNK 534
               KE N+
Sbjct: 200 LRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.0 bits (130), Expect = 2e-08
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 16/148 (10%)

Query: 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK 447
           W    +    ++    E      K   Y +A   Y++ ++                  L 
Sbjct: 43  WTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK----------APNNVDCL- 91

Query: 448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI-K 506
                  A  ++     K A ++  K+L L++ N+ A       Y   A+ +  + +   
Sbjct: 92  ----EACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDY 147

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNK 534
           K L      +  +      K     Y K
Sbjct: 148 KKLSSPTKMQYARYRDGLSKLFTTRYEK 175

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 15/99 (15%), Positives = 30/99 (30%), Gaps = 16/99 (16%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRR----------------AQAYIQM 495
           L   +  ++     QA     + + L+    +  Y                  A AY + 
Sbjct: 8   LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKN 67

Query: 496 ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
            + D A    K+ L+  P+N D       ++    +   
Sbjct: 68  RNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKD 106

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 74.7 bits (184), Expect = 1e-15
 Identities = 15/68 (22%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + Y     DG   D S     P  +  G G++I G +  ++  + G+     +
Sbjct: 4   AKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAV 62

Query: 114 PPELAYGE 121
               AYG+
Sbjct: 63  GANDAYGQ 70

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 46.6 bits (111), Expect = 4e-06
 Identities = 11/68 (16%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
           +  VV +    + +DG +  +   S      ++      +I GL+ A+   +  +   + 
Sbjct: 5   KDLVVSLAYQVRTEDGVLVDE---SPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVA 61

Query: 348 IAPEYAFG 355
           +    A+G
Sbjct: 62  VGANDAYG 69

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli} Length = 196

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/64 (23%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 173 DEVLVNYEARLEDGMVVGKADG---VEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY 229
             V + Y+ R EDG++V ++     +++    G     L  A++  + G+K  +AV    
Sbjct: 7   LVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGAND 66

Query: 230 GFGE 233
            +G+
Sbjct: 67  AYGQ 70

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 76.3 bits (188), Expect = 7e-15
 Identities = 42/185 (22%), Positives = 72/185 (38%), Gaps = 23/185 (12%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +        + K    ++  ++   A + K +GN  F A  +  A K Y+ A   IE D 
Sbjct: 3   HMNGEPDIAQLKG---LSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYA---IELDP 56

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
           +                  N +AC +   D ++  +  TK L++   + KAL RRA A  
Sbjct: 57  NEPV------------FYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE 104

Query: 494 QMADLDLAEFDIKKALEIDPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFAKMNT 549
            + +   A FD+   L ++ D         LE    K+ MK  N+  +K  G     + +
Sbjct: 105 SLGNFTDAMFDL-SVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPS 163

Query: 550 GSDLD 554
            + L 
Sbjct: 164 NTSLA 168

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 72.1 bits (177), Expect = 2e-13
 Identities = 30/218 (13%), Positives = 59/218 (27%), Gaps = 22/218 (10%)

Query: 339 KKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEA 398
              EV+ +  +  Y    A     L  +   +   Y V      K  + +          
Sbjct: 176 SHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVD 235

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
              ++     L   G +         A        S          +      +  A   
Sbjct: 236 DPLRENAALALCYTGIFHFLKNNLLDAQVL--LQESI--NLHPTPNSY-----IFLALTL 286

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD- 517
              ++ ++  K   K +DL+       Y R Q Y  + D   A+ D +KA  ++P+N   
Sbjct: 287 ADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYP 346

Query: 518 ------VKLEYKTLKEKMKEYNK------KEAKFYGNM 543
                 +  +     E    +N+         +     
Sbjct: 347 YIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFF 384

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 71.7 bits (176), Expect = 2e-13
 Identities = 28/146 (19%), Positives = 54/146 (36%), Gaps = 6/146 (4%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
              L   G +  A K+Y+ A +     +           KA  +A   +    +L  + +
Sbjct: 385 AEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKF 444

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK----- 519
             A KL TK  +LD R+ +A    AQ  +QM  +D A    + +  +     +       
Sbjct: 445 NAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTF 504

Query: 520 LEYKTLKEKMKEYNKKEAKFYGNMFA 545
            E   ++++++      AK    +  
Sbjct: 505 AEAAKIQKRLRADPIISAKMELTLAR 530

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.9 bits (148), Expect = 6e-10
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 11/103 (10%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
           G +        +             + +  A  LK     N        K++ +A K   
Sbjct: 1   GSHMNGEPDIAQLKGLSP------SQRQAYAVQLK-----NRGNHFFTAKNFNEAIKYYQ 49

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++LD          +  YI   DL+       KALEI PD+
Sbjct: 50  YAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDH 92

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.0 bits (143), Expect = 2e-09
 Identities = 14/113 (12%), Positives = 28/113 (24%), Gaps = 15/113 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G   F    Y  A + ++KA      +                   +  A    K   + 
Sbjct: 317 GQMYFILQDYKNAKEDFQKA---QSLNPEN-------VYPY-----IQLACLLYKQGKFT 361

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           ++E    +         +     A+      D D A      A  ++     +
Sbjct: 362 ESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKI 414

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.4 bits (139), Expect = 6e-09
 Identities = 18/163 (11%), Positives = 39/163 (23%), Gaps = 12/163 (7%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E +            + F              +  Y        D  ++   A      +
Sbjct: 154 EGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLV 213

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
            N         Y       T    L      AL      +    +L  A+  +++++ + 
Sbjct: 214 ANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH 273

Query: 513 PDNR------DVKLEYKTLKEKMKEYNK------KEAKFYGNM 543
           P             + +  +E  K + K      +    Y + 
Sbjct: 274 PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHR 316

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 70.7 bits (174), Expect = 1e-14
 Identities = 16/74 (21%), Positives = 25/74 (33%)

Query: 48  EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE 107
           +  D         + Y       +    S     P +F +G   +I G +  +   + GE
Sbjct: 2   QNHDLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGE 61

Query: 108 NAVFTIPPELAYGE 121
                I PE AYG 
Sbjct: 62  WEEVVIAPEEAYGV 75

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori} Length = 151

 Score = 43.0 bits (102), Expect = 3e-05
 Identities = 16/69 (23%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 287 NEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL 346
           +      ++   + Q  ++ +    +  ++  EF     Q+I GL++AV+  +  E   +
Sbjct: 8   SIKQAALIEYEVREQGSSIVLDS--NISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEV 65

Query: 347 TIAPEYAFG 355
            IAPE A+G
Sbjct: 66  VIAPEEAYG 74

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 69.8 bits (171), Expect = 2e-14
 Identities = 25/129 (19%), Positives = 46/129 (35%), Gaps = 19/129 (14%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G   ++AGK+  A K ++       YD  +                L   AC+  L  
Sbjct: 23  ALGFNQYQAGKWDDAQKIFQALCMLDHYDARY---------------FLGLGACRQSLGL 67

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y+QA +  +    +D    +  +  A+ ++Q+ DLD AE     A  +          ++
Sbjct: 68  YEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQP----AHE 123

Query: 524 TLKEKMKEY 532
            L  +    
Sbjct: 124 ALAARAGAM 132

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 9/62 (14%), Positives = 20/62 (32%)

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532
            +  L    ++ LY       Q    D A+   +    +D  +    L     ++ +  Y
Sbjct: 9   MLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLY 68

Query: 533 NK 534
            +
Sbjct: 69  EQ 70

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} PDB: 3pra_A Length = 157

 Score = 69.7 bits (171), Expect = 2e-14
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A* Length = 158

 Score = 67.3 bits (165), Expect = 2e-13
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTI 113
                V + YT  + +G   D          +  G  N+I G +  ++  ++GE     +
Sbjct: 4   GQDKVVTIRYTLQV-EGEVLDQG-----ELSYLHGHRNLIPGLEEALEGREEGEAFQAHV 57

Query: 114 PPELAYGE 121
           P E AYG 
Sbjct: 58  PAEKAYGP 65

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 66.0 bits (161), Expect = 4e-13
 Identities = 14/127 (11%), Positives = 41/127 (32%), Gaps = 16/127 (12%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                 +  G+   A   +     Y  Y+  +                +  AA     + 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDY---------------IMGLAAIYQIKEQ 85

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           ++QA  L      L   +   ++   Q  +++     A+   +  ++   D   +K++ +
Sbjct: 86  FQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDE-KLKIKAQ 144

Query: 524 TLKEKMK 530
           +  + ++
Sbjct: 145 SYLDAIQ 151

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 70.6 bits (173), Expect = 5e-13
 Identities = 23/112 (20%), Positives = 34/112 (30%), Gaps = 8/112 (7%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E G   F       A   ++ A   +         EK  A         N      KLK 
Sbjct: 480 ELGVVAFNKSDMQTAINHFQNA---LLLVKKTQSNEKPWAATW-----ANLGHAYRKLKM 531

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           Y  A     + L L + +       A  Y+      LA   + ++L I P+ 
Sbjct: 532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNE 583

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 18/134 (13%), Positives = 37/134 (27%), Gaps = 15/134 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G       K + A + + K+      D  FG            A     A       ++ 
Sbjct: 380 GIYYLCVNKISEARRYFSKS---STMDPQFGP-----------AWI-GFAHSFAIEGEHD 424

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           QA    T    L              ++Q+ ++ LA   ++ +  +   +  +  E   +
Sbjct: 425 QAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVV 484

Query: 526 KEKMKEYNKKEAKF 539
                +       F
Sbjct: 485 AFNKSDMQTAINHF 498

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 60.6 bits (147), Expect = 8e-10
 Identities = 26/152 (17%), Positives = 44/152 (28%), Gaps = 22/152 (14%)

Query: 405 QGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG-------DEEKKQAKALK------ 447
           +G        + RA + Y++A+       E             DEE      L       
Sbjct: 206 RGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSK 265

Query: 448 -----VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                +         K   +D  +  +     ++   ++   L  +A      +      
Sbjct: 266 EDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVL 325

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
               K LEIDP N DV   +     +  E NK
Sbjct: 326 AITTKILEIDPYNLDVYPLHLASLHESGEKNK 357

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 17/118 (14%), Positives = 35/118 (29%), Gaps = 18/118 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----- 460
           G    + G    A++  + +    +YD             L     L   A         
Sbjct: 448 GMQHMQLGNILLANEYLQSSYALFQYD----------PLLL---NELGVVAFNKSDMQTA 494

Query: 461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           +  ++ A  L  K    +            AY ++   D A   + + L +  ++ +V
Sbjct: 495 INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANV 552

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 12/111 (10%), Positives = 32/111 (28%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           + +TLF   ++        K ++   Y+               +     + A   +  + 
Sbjct: 311 KADTLFVRSRFIDVLAITTKILEIDPYN---------------LDVYPLHLASLHESGEK 355

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            +   +   ++D               Y+ +  +  A     K+  +DP  
Sbjct: 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF 406

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 14/110 (12%), Positives = 32/110 (29%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +L ++G+  +        V          D   ++A        +      L +    
Sbjct: 346 LASLHESGEKNKLYLISNDLV----------DRHPEKAVTW---LAV--GIYYLCVNKIS 390

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +  +K   +D +   A    A ++    + D A      A  +    
Sbjct: 391 EARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 50.2 bits (120), Expect = 1e-06
 Identities = 12/112 (10%), Positives = 32/112 (28%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R ++ Y  ++  +          +K +  L     L  A        
Sbjct: 276 MLKLNKTSHEDELRRAEDYLSSINGL----------EKSSDLL-----LCKADTLFVRSR 320

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +     + TK+L++D  N+        +  +  + +         ++  P+ 
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEK 372

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 28/126 (22%), Positives = 39/126 (30%), Gaps = 32/126 (25%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G YARA     K   Y                    AC    A C +KL D++
Sbjct: 124 AQVYCCTGDYARAKCLLTKEDLYNRS----------------SACRYLAAFCLVKLYDWQ 167

Query: 466 QAEKLC------------TKVLDLDSRNVK----ALYRRAQAYIQMADLDLAEFDIKKAL 509
            A  L                L +    +K      Y R Q Y  +++ D A+   K+AL
Sbjct: 168 GALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEAL 227

Query: 510 EIDPDN 515
            +D   
Sbjct: 228 MVDAKC 233

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 67.7 bits (166), Expect = 7e-13
 Identities = 20/137 (14%), Positives = 41/137 (29%), Gaps = 21/137 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA-CKLKLKDY 464
           G  L++  +Y  A +R  +A +   Y           ++         N     L++K  
Sbjct: 112 GGFLYEQKRYEEAYQRLLEASQDTLYPER--------SRVF------ENLGLVSLQMKKP 157

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-----VK 519
            QA++   K L L+          A    +  +   A        +    N       ++
Sbjct: 158 AQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIR 217

Query: 520 LEYKT-LKEKMKEYNKK 535
           L      ++    Y  +
Sbjct: 218 LAKVFEDRDTAASYGLQ 234

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 5/88 (5%)

Query: 436 GDEEKKQAKALK-----VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ 490
              ++   K  K         +      L+  + +QA+    K L++D  +  A    A 
Sbjct: 20  HMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAV 79

Query: 491 AYIQMADLDLAEFDIKKALEIDPDNRDV 518
            +    +  LA+ + +KAL  D  N  V
Sbjct: 80  VFQTEMEPKLADEEYRKALASDSRNARV 107

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 35/172 (20%), Positives = 55/172 (31%), Gaps = 55/172 (31%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G    + G   +A     KA   +E D S        A A          A   +   + 
Sbjct: 44  GLGYLQRGNTEQAKVPLRKA---LEIDPSS-------ADAH------AALAVVFQTEMEP 87

Query: 465 KQAEKLCTKVLDLDSRNVKALY-----------------------------RRAQAY--- 492
           K A++   K L  DSRN + L                               R++ +   
Sbjct: 88  KLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENL 147

Query: 493 ----IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
               +QM     A+   +K+L ++ +   V LE   L  K +EY    A+ Y
Sbjct: 148 GLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREY--VPARQY 197

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 42.6 bits (101), Expect = 1e-04
 Identities = 13/63 (20%), Positives = 27/63 (42%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           ++ +  L  +     ++   K          A  +    Y+Q  + + A+  ++KALEID
Sbjct: 8   HHHSSGLVPRGSHMGDQNPLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEID 67

Query: 513 PDN 515
           P +
Sbjct: 68  PSS 70

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 29/135 (21%), Positives = 46/135 (34%), Gaps = 10/135 (7%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E G   F+ G++  A K +  A   +E   + G+E            N N      KLK 
Sbjct: 198 EVGVVAFQNGEWKTAEKWFLDA---LEKIKAIGNEVTVDKWEP--LLN-NLGHVCRKLKK 251

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y +A     + L L  +N          +  M + + A      AL +  D+        
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS---VT 308

Query: 524 TLKEKMKEYNK-KEA 537
            L   ++ Y    EA
Sbjct: 309 MLGHCIEMYIGDSEA 323

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 54.2 bits (131), Expect = 4e-08
 Identities = 22/129 (17%), Positives = 37/129 (28%), Gaps = 16/129 (12%)

Query: 415 YARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470
           Y     + E A +Y       + ++G            A             ++ QA   
Sbjct: 100 YLMVGHKNEHARRYLSKATTLEKTYGP-----------AWI-AYGHSFAVESEHDQAMAA 147

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530
                 L       +      Y    +  LAE    +AL I P++  V  E   +  +  
Sbjct: 148 YFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG 207

Query: 531 EYNKKEAKF 539
           E+   E  F
Sbjct: 208 EWKTAEKWF 216

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 16/112 (14%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                +    +    K     ++          ++   A  L       +    ++L   
Sbjct: 28  LAERHYYNCDFKMCYKLTSVVME----------KDPFHASCLP-----VHIGTLVELNKA 72

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDN 515
            +   L  K++DL   N  + +     Y+ +    + A   + KA  ++   
Sbjct: 73  NELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTY 124

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 11/64 (17%), Positives = 26/64 (40%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           ++ A       D+K   KL + V++ D  +   L       +++   +   +   K +++
Sbjct: 26  VSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDL 85

Query: 512 DPDN 515
            P N
Sbjct: 86  YPSN 89

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 15/113 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
            G++     ++ +A   Y  A    +               +     L          + 
Sbjct: 131 YGHSFAVESEHDQAMAAYFTA---AQLMKGC-------HLPM-----LYIGLEYGLTNNS 175

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           K AE+  ++ L +   +   ++       Q  +   AE     ALE      +
Sbjct: 176 KLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN 228

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 10/70 (14%), Positives = 26/70 (37%)

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           K +E +  + +D    N+  +   A+ +    D  +        +E DP +      +  
Sbjct: 5   KPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIG 64

Query: 525 LKEKMKEYNK 534
              ++ + N+
Sbjct: 65  TLVELNKANE 74

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A Length = 231

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 14/81 (17%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGI 100
           E G  V++ Y G + DG  FD++ +                P     G+G V+ G D  I
Sbjct: 3   EKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAI 61

Query: 101 KTMKKGENAVFTIPPELAYGE 121
             M  GE     +PPE A+G+
Sbjct: 62  LEMDVGEEREVVLPPEKAFGK 82

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 65.0 bits (159), Expect = 8e-12
 Identities = 21/110 (19%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L K G+ + A ++Y+ A   ++ DT+                     +      ++ 
Sbjct: 81  GKILMKKGQDSLAIQQYQAA---VDRDTTR-------LDMYG-----QIGSYFYNKGNFP 125

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A +   K +   + + K  Y   QAY    +   A+    K LE+ P+ 
Sbjct: 126 LAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI 175

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.4 bits (142), Expect = 1e-09
 Identities = 20/159 (12%), Positives = 38/159 (23%), Gaps = 29/159 (18%)

Query: 405 QGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG---DEEKKQAKALKVACNLNNAA- 456
             + LFK   YA A + + K                    E  K   A K      +   
Sbjct: 9   YADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVN 68

Query: 457 --------------CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
                           +K      A +     +D D+  +    +    +    +  LA 
Sbjct: 69  ATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAI 128

Query: 503 FDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNK 534
             ++K +     +              K   +    + K
Sbjct: 129 QYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVK 167

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 56.9 bits (138), Expect = 4e-09
 Identities = 20/137 (14%), Positives = 38/137 (27%), Gaps = 22/137 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G   +   +Y +A   + K    +E                        A          
Sbjct: 149 GQAYYYNKEYVKADSSFVKV---LELK-------PNIYIGY---LWRARANAAQDPDTKQ 195

Query: 465 KQAEKLCTKVLDLDSRN--------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
             A+    K++++ +          ++A    A  Y    D   A+   K  L +DP N+
Sbjct: 196 GLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

Query: 517 DVKLEYKTLKEKMKEYN 533
                 K   E    ++
Sbjct: 256 KAIDGLKMKLEHHHHHH 272

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 23/141 (16%), Positives = 41/141 (29%), Gaps = 31/141 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G+  +  G +  A +  EK    I   T+         K                 K+Y 
Sbjct: 115 GSYFYNKGNFPLAIQYMEKQ---IRPTTTD-------PKVF-----YELGQAYYYNKEYV 159

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNRDVKLEY 522
           +A+    KVL+L          RA+A           LA+   +K +E+           
Sbjct: 160 KADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA----- 214

Query: 523 KTLKEKMKEYNKKEAKFYGNM 543
                   +Y  +  +    +
Sbjct: 215 --------KYKDELIEANEYI 227

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 15/112 (13%), Positives = 35/112 (31%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L        ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVLL-----LLSSIHFQCRR 48

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++    T  +  +    +A       Y +   L  A    + AL + PD 
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 3e-11
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N L + G  A A   Y  A   +    +        A +L    NL  A  K +  + +
Sbjct: 278 ANALKEKGSVAEAEDCYNTA---LRLCPTH-------ADSL---NNL--ANIKREQGNIE 322

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           +A +L  K L++      A    A    Q   L  A    K+A+ I P   D
Sbjct: 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD 374

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.7 bits (156), Expect = 5e-11
 Identities = 23/110 (20%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G+   A   +EKA   +  D +F         A     NL N     + + + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKA---VTLDPNF-------LDAY---INLGNV--LKEARIFD 220

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A     + L L   +       A  Y +   +DLA    ++A+E+ P  
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 1e-10
 Identities = 25/110 (22%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
               ++ G    A   Y +A   IE    F         A    CNL NA    +     
Sbjct: 244 ACVYYEQGLIDLAIDTYRRA---IELQPHF-------PDAY---CNLANA--LKEKGSVA 288

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +AE      L L   +  +L   A    +  +++ A    +KALE+ P+ 
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 2e-10
 Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
              L  AG    A + Y  A   ++Y+                  +L N      L   +
Sbjct: 108 AAALVAAGDMEGAVQAYVSA---LQYNPDL-------YCVR---SDLGNL--LKALGRLE 152

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A+    K ++       A       +    ++ LA    +KA+ +DP+ 
Sbjct: 153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF 202

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 5e-10
 Identities = 20/110 (18%), Positives = 33/110 (30%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN   + G+   A + Y  A   +     F D               N AA  +   D +
Sbjct: 74  GNVYKERGQLQEAIEHYRHA---LRLKPDFID-----------GYI-NLAAALVAAGDME 118

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A +     L  +                +  L+ A+    KA+E  P+ 
Sbjct: 119 GAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNF 168

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 59.5 bits (145), Expect = 9e-10
 Identities = 22/110 (20%), Positives = 35/110 (31%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN L +A  + RA   Y +A   +    +        A       NL  A    +     
Sbjct: 210 GNVLKEARIFDRAVAAYLRA---LSLSPNH-------AVVH---GNL--ACVYYEQGLID 254

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            A     + ++L      A    A A  +   +  AE     AL + P +
Sbjct: 255 LAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTH 304

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 58.3 bits (142), Expect = 2e-09
 Identities = 12/64 (18%), Positives = 27/64 (42%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +  A  + +  D++ AE+ C ++   +  N   L   +  + Q   LD +      A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 512 DPDN 515
           +P  
Sbjct: 63  NPLL 66

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 64.1 bits (156), Expect = 5e-11
 Identities = 9/113 (7%), Positives = 27/113 (23%), Gaps = 15/113 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            +     G         ++    +              +A+           +   + + 
Sbjct: 30  ADAELGMGDTTAGEMAVQRG---LALHPGH-------PEAV-----ARLGRVRWTQQRHA 74

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           +A  L  +  D    +         A       + A     +A ++ P+   +
Sbjct: 75  EAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYI 127

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 54.1 bits (130), Expect = 9e-08
 Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 15/107 (14%)

Query: 412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC 471
                R   +   AV++            +   A      L  A  +L + D    E   
Sbjct: 2   TADGPRELLQLRAAVRH----------RPQDFVAW-----LMLADAELGMGDTTAGEMAV 46

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            + L L   + +A+ R  +          A   +++A +  P++  +
Sbjct: 47  QRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGI 93

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 15/129 (11%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      ++   K  L+  +
Sbjct: 385 GGGKQALETVQRLLPVLCQA---HGLTP-------EQVVAIA-----SHDGGKQALETVQ 429

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +   +  +   L  + V A+         +  +         AL    ++  V L     
Sbjct: 430 RLLPVLCQAHGLTPQQVVAIASNGGGRPALESIVAQLSRPDPALAALTNDHLVALACLGG 489

Query: 526 KEKMKEYNK 534
           +  +    K
Sbjct: 490 RPALDAVKK 498

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 1e-10
 Identities = 12/136 (8%), Positives = 35/136 (25%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +A               +Q  A+      +N   K  L+  +
Sbjct: 351 DGGKQALETVQRLLPVLCQA---HGLTP-------EQVVAIA-----SNGGGKQALETVQ 395

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NR-DV 518
           +   +  +   L    V A+         +  +      + +A  + P       +    
Sbjct: 396 RLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNGGG 455

Query: 519 KLEYKTLKEKMKEYNK 534
           +   +++  ++   + 
Sbjct: 456 RPALESIVAQLSRPDP 471

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.5 bits (152), Expect = 2e-10
 Identities = 14/136 (10%), Positives = 38/136 (27%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      ++   K  L+  +
Sbjct: 317 GGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SHDGGKQALETVQ 361

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVK 519
           +   +  +   L    V A+         +  +      + +A  + P+      + D  
Sbjct: 362 RLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGG 421

Query: 520 LEY-KTLKEKMKEYNK 534
            +  +T++  +    +
Sbjct: 422 KQALETVQRLLPVLCQ 437

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.1 bits (151), Expect = 2e-10
 Identities = 15/136 (11%), Positives = 39/136 (28%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A               +Q  A+      +N+  K  L+  +
Sbjct: 249 GGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAI-----ASNSGGKQALETVQ 293

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVK 519
           +   +  +   L  + V A+         +  +      + +A  + P       + D  
Sbjct: 294 RLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGG 353

Query: 520 LEY-KTLKEKMKEYNK 534
            +  +T++  +    +
Sbjct: 354 KQALETVQRLLPVLCQ 369

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 4e-10
 Identities = 15/138 (10%), Positives = 37/138 (26%), Gaps = 22/138 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A               +Q  A+      +N   K  L+ 
Sbjct: 213 SNGGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SNGGGKQALET 257

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
            ++   +  +   L  + V A+   +     +  +      + +A  + P          
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 518 -VKLEYKTLKEKMKEYNK 534
             K   +T++  +    +
Sbjct: 318 GGKQALETVQRLLPVLCQ 335

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.1 bits (146), Expect = 8e-10
 Identities = 13/138 (9%), Positives = 34/138 (24%), Gaps = 22/138 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                               +A               +Q  A+      +N   K  L+ 
Sbjct: 145 SHDGGKQALETVQALLPVLCQA---HGLTP-------EQVVAIA-----SNGGGKQALET 189

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
            ++   +  +   L  + V A+         +  +      + +A  + P          
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 518 -VKLEYKTLKEKMKEYNK 534
             K   +T++  +    +
Sbjct: 250 GGKQALETVQRLLPVLCQ 267

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 59.8 bits (145), Expect = 1e-09
 Identities = 14/137 (10%), Positives = 37/137 (27%), Gaps = 22/137 (16%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A               +Q  A+      +N   K  L+  
Sbjct: 282 NSGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAI-----ASNGGGKQALETV 326

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRD- 517
           ++   +  +   L  + V A+         +  +      + +A  + P+      +   
Sbjct: 327 QRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNGG 386

Query: 518 VKLEYKTLKEKMKEYNK 534
            K   +T++  +    +
Sbjct: 387 GKQALETVQRLLPVLCQ 403

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 57.5 bits (139), Expect = 7e-09
 Identities = 11/112 (9%), Positives = 28/112 (25%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R      +A               +Q  A+      ++   K  L+ 
Sbjct: 77  SHDGGKQALETVQRLLPVLCQA---HGLTP-------QQVVAIA-----SHDGGKQALET 121

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + P+ 
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQ 173

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 54.0 bits (130), Expect = 7e-08
 Identities = 13/131 (9%), Positives = 38/131 (29%), Gaps = 21/131 (16%)

Query: 413 GKYARASKRYEKAV--KYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL 470
                A   +  A+    +           +Q  A+      ++   K  L+  ++   +
Sbjct: 47  VTAVEAVHAWRNALTGAPLNLTP-------EQVVAI-----ASHDGGKQALETVQRLLPV 94

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYK 523
             +   L  + V A+         +  +      + +A  + P+           K   +
Sbjct: 95  LCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHDGGKQALE 154

Query: 524 TLKEKMKEYNK 534
           T++  +    +
Sbjct: 155 TVQALLPVLCQ 165

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 9/91 (9%), Positives = 24/91 (26%), Gaps = 2/91 (2%)

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
                       +  ++ A  L    L+L    V A+         +  +      + +A
Sbjct: 41  IAKRGGVTAVEAVHAWRNA--LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQA 98

Query: 509 LEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
             + P        +   K+ ++   +     
Sbjct: 99  HGLTPQQVVAIASHDGGKQALETVQRLLPVL 129

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 23/137 (16%), Positives = 38/137 (27%), Gaps = 23/137 (16%)

Query: 406 GNTLF-KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA-CKLKLKD 463
           G  L  +  + A +   ++KA+    Y T           A        N   C  K   
Sbjct: 83  GWFLCGRLNRPAESMAYFDKALADPTYPTP--------YIAN------LNKGICSAKQGQ 128

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
           +  AE    + L    +   A    A+  +    L  A++  KK        +       
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188

Query: 518 VKLEYKTLKEKMKEYNK 534
            K+    L      Y  
Sbjct: 189 WKIAKA-LGNAQAAYEY 204

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 55.3 bits (134), Expect = 6e-09
 Identities = 26/174 (14%), Positives = 50/174 (28%), Gaps = 32/174 (18%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------EEK 440
           E+  + +  K +      +   Y +A+   E A   ++ D                 +  
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDA---LKSDPKNELAWLVRAEIYQYLKVN 58

Query: 441 KQA-----KALKVA-------CNLNNAACKLKLKDYKQAEKLCTKVL--DLDSRNVKALY 486
            +A     +AL +         N     C  +L    ++     K L          A  
Sbjct: 59  DKAQESFRQALSIKPDSAEINNNYGWFLCG-RLNRPAESMAYFDKALADPTYPTPYIANL 117

Query: 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
            +     +     LAE  +K++L   P       E    K    +    +A +Y
Sbjct: 118 NKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL--GDADYY 169

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 58.4 bits (140), Expect = 2e-10
 Identities = 27/153 (17%), Positives = 51/153 (33%), Gaps = 14/153 (9%)

Query: 390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA 449
           M   +++  A            AG+Y  A+    +A   +E   +   EE          
Sbjct: 2   MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAF 58

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-----------VKALYRRAQAYIQMADL 498
           C+   A     L+ + +A     K L   +R            + A+Y RA A   +   
Sbjct: 59  CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRG 118

Query: 499 DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
             A  + KK +E+  + +      + + E   +
Sbjct: 119 AEAMPEFKKVVEMIEERKGETPGKERMMEVAID 151

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 18/135 (13%), Positives = 40/135 (29%), Gaps = 15/135 (11%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                 +++G Y  A   ++        D                   L   AC+  +  
Sbjct: 26  SLAFNQYQSGXYEDAHXVFQAL---CVLDHYDSR------------FFLGLGACRQAMGQ 70

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
           Y  A    +    +D    +  +  A+  +Q  +L  AE  +  A E+  +  +      
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

Query: 524 TLKEKMKEYNKKEAK 538
            +   ++    K+  
Sbjct: 131 RVSSMLEAIKLKKEM 145

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 12/85 (14%), Positives = 23/85 (27%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           A  + +   Y+ A  +   +  LD  + +           M   DLA         +D  
Sbjct: 28  AFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX 87

Query: 515 NRDVKLEYKTLKEKMKEYNKKEAKF 539
                        +  E  + E+  
Sbjct: 88  EPRFPFHAAECLLQXGELAEAESGL 112

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 10/72 (13%), Positives = 23/72 (31%)

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY 522
                      + ++ S  ++ LY  A    Q    + A    +    +D  +    L  
Sbjct: 2   PLGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGL 61

Query: 523 KTLKEKMKEYNK 534
              ++ M +Y+ 
Sbjct: 62  GACRQAMGQYDL 73

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 20/158 (12%), Positives = 46/158 (29%), Gaps = 28/158 (17%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEY-------DTSFGDEEKKQA------KALKV 448
           G  L+  G+   A        +               +    +++ K+       K+ K 
Sbjct: 118 GIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE 177

Query: 449 ACNLNNAACKL----KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
               N     L    +    ++ +   T    L     +  +   + Y+ + DLD A   
Sbjct: 178 QWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 237

Query: 505 IKKALEIDPDN-------RDVKLEYKTLKEKMKEYNKK 535
            K A+  +  N                 ++ + E +++
Sbjct: 238 FKLAVANNVHNFVEHRYALLELSLLGQDQDDLAESDQQ 275

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 58.9 bits (143), Expect = 7e-10
 Identities = 30/185 (16%), Positives = 60/185 (32%), Gaps = 24/185 (12%)

Query: 356 SAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKY 415
           ++  + E+  VP   T+  EV L   E+   S  +  +E+ +   ++   G      G  
Sbjct: 3   TSWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLYER---GVLYDSLGLR 59

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL 475
           A A   + +A   +              +       L       +  ++  A +    VL
Sbjct: 60  ALARNDFSQA---LAIRPDM-------PEVF---NYLGIY--LTQAGNFDAAYEAFDSVL 104

Query: 476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRDVKLEYKTLKEKM 529
           +LD     A   R  A        LA+ D+    + DP+         +  +    K+  
Sbjct: 105 ELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAK 164

Query: 530 KEYNK 534
           +   +
Sbjct: 165 EVLKQ 169

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.8 bits (146), Expect = 3e-10
 Identities = 22/110 (20%), Positives = 42/110 (38%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N L    +  RA   Y+KA   +E D+S              A         +  + YK
Sbjct: 64  ANLLSSVNELERALAFYDKA---LELDSSAAT-----------AYY-GAGNVYVVKEMYK 108

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A+ +  K L     N    Y      +++    LA   +++A+E++ ++
Sbjct: 109 EAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 22/127 (17%), Positives = 39/127 (30%), Gaps = 15/127 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L K  +   A    ++A   +E + +  +           A       C        
Sbjct: 132 GTVLVKLEQPKLALPYLQRA---VELNENDTE-----------ARF-QFGMCLANEGMLD 176

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A      V + D  +  A Y     Y    + + A   + KA++I PD+       K L
Sbjct: 177 EALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236

Query: 526 KEKMKEY 532
                 +
Sbjct: 237 GHHHHHH 243

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 4e-08
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 22/137 (16%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q     + G Y +A++ + KA   IE +          A        +N A     + + 
Sbjct: 29  QMGRGSEFGDYEKAAEAFTKA---IEENKED-------AIPY-----INFANLLSSVNEL 73

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------- 517
           ++A     K L+LDS    A Y     Y+       A+   +KAL    +N D       
Sbjct: 74  ERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGT 133

Query: 518 VKLEYKTLKEKMKEYNK 534
           V ++ +  K  +    +
Sbjct: 134 VLVKLEQPKLALPYLQR 150

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.4 bits (124), Expect = 2e-07
 Identities = 14/102 (13%), Positives = 32/102 (31%), Gaps = 15/102 (14%)

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL--KLKDYKQAEKLCTK 473
             +   +  +   +              +   +A            +  DY++A +  TK
Sbjct: 2   GSSHHHHHHSSGLVP-------------RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTK 48

Query: 474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++ +  +       A     + +L+ A     KALE+D   
Sbjct: 49  AIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSA 90

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +A                Q  A+      +N   K  L+  +
Sbjct: 233 DGGKQALETMQRLLPVLCQA---HGLPP-------DQVVAIA-----SNIGGKQALETVQ 277

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 278 RLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 13/112 (11%), Positives = 27/112 (24%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
                        R      +A                Q  A+      +N   K  L+ 
Sbjct: 638 SHDGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASNGGGKQALET 682

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 683 VQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQ 734

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.8 bits (134), Expect = 3e-08
 Identities = 13/112 (11%), Positives = 28/112 (25%), Gaps = 15/112 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A                Q  A+      ++   K  L+ 
Sbjct: 299 SHGGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASHDGGKQALET 343

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 344 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 4e-08
 Identities = 12/111 (10%), Positives = 27/111 (24%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      ++   K  L+  
Sbjct: 198 NNGGKQALETVQRLLPVLCQA---HGLTP-------AQVVAIA-----SHDGGKQALETM 242

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 243 QRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 5e-08
 Identities = 10/111 (9%), Positives = 26/111 (23%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      ++   K  L+  
Sbjct: 605 NIGGKQALETVQRLLPVLCQAHGL----------TPAQVVAI-----ASHDGGKQALETV 649

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  +  + 
Sbjct: 650 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQ 700

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.5 bits (128), Expect = 2e-07
 Identities = 14/161 (8%), Positives = 36/161 (22%), Gaps = 23/161 (14%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
             G          R      +A                Q  A+       +   K  L+ 
Sbjct: 367 SNGGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI------ASNGGKQALET 410

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD------ 517
            ++   +  +   L    V A+         +  +      + +   + P          
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470

Query: 518 -VKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTGSDLDCGG 557
             K   +T+++ +    +        + A  +         
Sbjct: 471 GGKQALETVQQLLPVLCQAHGLTPDQVVAIASNIGGKQALA 511

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 3e-07
 Identities = 26/190 (13%), Positives = 57/190 (30%), Gaps = 30/190 (15%)

Query: 335 VITMKKNEVALLTIAPEY-----AFGSAESQQELAVVPPNSTVHYEVELVSFEKE--KES 387
           ++ + ++  AL T+A  Y     A   A  +  + V    S       L++   E     
Sbjct: 91  IVALSQHPAALGTVAVTYQHIITALPEATHEDIVGVGKQWSGARALEALLTDAGELRGPP 150

Query: 388 WDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAV--KYIEYDTSFGDEEKKQAKA 445
             ++T + ++ A +                A      A+    +            Q  A
Sbjct: 151 LQLDTGQLVKIAKRGG---------VTAMEAVHASRNALTGAPLNLTP-------AQVVA 194

Query: 446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDI 505
           +      +N   K  L+  ++   +  +   L    V A+         +  +      +
Sbjct: 195 I-----ASNNGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVL 249

Query: 506 KKALEIDPDN 515
            +A  + PD 
Sbjct: 250 CQAHGLPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 14/110 (12%), Positives = 28/110 (25%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A                Q  A+      +N   K  L+  +
Sbjct: 572 GGGKQALETVQRLLPVLCQA---HGLTQ-------VQVVAI-----ASNIGGKQALETVQ 616

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   +  +   L    V A+         +  +      + +A  + PD 
Sbjct: 617 RLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.8 bits (121), Expect = 1e-06
 Identities = 14/129 (10%), Positives = 33/129 (25%), Gaps = 15/129 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G          R      +A                Q  A+      +N   K  L+  +
Sbjct: 538 GGGKQALETVQRLLPVLCQA---HGLTP-------DQVVAI-----ASNGGGKQALETVQ 582

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +   +  +   L    V A+         +  +      + +A  + P        +   
Sbjct: 583 RLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHDGG 642

Query: 526 KEKMKEYNK 534
           K+ ++   +
Sbjct: 643 KQALETVQR 651

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 12/112 (10%), Positives = 26/112 (23%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      +      +A                Q  A+      +N   K  L   +
Sbjct: 470 DGGKQALETVQQLLPVLCQAHGL----------TPDQVVAIA-----SNIGGKQALATVQ 514

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           +   +  +   L    V A+         +  +      + +A  + PD   
Sbjct: 515 RLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 4e-06
 Identities = 11/111 (9%), Positives = 25/111 (22%), Gaps = 15/111 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
                       R      +A                Q  A+      +N   K  L+  
Sbjct: 503 NIGGKQALATVQRLLPVLCQA---HGLTP-------DQVVAIA-----SNGGGKQALETV 547

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++   +  +   L    V A+         +  +      + +A  +    
Sbjct: 548 QRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQVQ 598

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 47.7 bits (113), Expect = 9e-06
 Identities = 13/110 (11%), Positives = 27/110 (24%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                      R      +                 Q  A+      ++   K  L+  +
Sbjct: 436 DGGKQALETVQRLLPVLCQT---HGLTP-------AQVVAI-----ASHDGGKQALETVQ 480

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           Q   +  +   L    V A+         +A +      + +A  + PD 
Sbjct: 481 QLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 45.4 bits (107), Expect = 5e-05
 Identities = 16/146 (10%), Positives = 40/146 (27%), Gaps = 15/146 (10%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK---VACNLN 453
           +  G    Q   +       +A +  ++ +               QA  L    V    +
Sbjct: 794 QDHGLTLAQVVAIASNIGGKQALETVQRLL-----------PVLCQAHGLTQDQVVAIAS 842

Query: 454 NAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP 513
           N   K  L+  ++   +  +   L    V A+         +  +      + +   +  
Sbjct: 843 NIGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTL 902

Query: 514 DNRDVKLEYKTLKEKMKEYNKKEAKF 539
           D   V +     K+ ++   +     
Sbjct: 903 DQ-VVAIASNGGKQALETVQRLLPVL 927

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 44.6 bits (105), Expect = 8e-05
 Identities = 14/160 (8%), Positives = 46/160 (28%), Gaps = 19/160 (11%)

Query: 386 ESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKA 445
           E+         +  G   +Q   +       +A +  ++ +               Q   
Sbjct: 851 ETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQALETVQRLL-----------PVLCQDHG 899

Query: 446 LKVACN--LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEF 503
           L +     + +   K  L+  ++   +  +   L    V A+   +     +  +     
Sbjct: 900 LTLDQVVAIASNGGKQALETVQRLLPVLCQDHGLTPDQVVAIASNSGGKQALETVQRLLP 959

Query: 504 DIKKALEIDPD------NRDVKLEYKTLKEKMKEYNKKEA 537
            + +   + P+      +   K   +++  ++   +   A
Sbjct: 960 VLCQDHGLTPNQVVAIASNGGKQALESIVAQLSRPDPALA 999

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.9 bits (136), Expect = 3e-09
 Identities = 25/110 (22%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G +  KAG+Y++A    E+     + D                  +L  A   +K     
Sbjct: 15  GISHAKAGRYSQAVMLLEQV---YDADAFD-------VDVA---LHLGIA--YVKTGAVD 59

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +  +L  + L     NVK        Y+Q+   DLA   + K  E +P N
Sbjct: 60  RGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPIN 109

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 55.2 bits (134), Expect = 5e-09
 Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 22/136 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G    K G   R ++  E++   +              K       L      ++++ Y 
Sbjct: 49  GIAYVKTGAVDRGTELLERS---LADAPDN-------VKVA---TVLGLT--YVQVQKYD 93

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------V 518
            A  L  KV + +  N    +R   A   +   D A    K AL + P+           
Sbjct: 94  LAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFS 153

Query: 519 KLEYKTLKEKMKEYNK 534
             +    +E +  + K
Sbjct: 154 YEQMGRHEEALPHFKK 169

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 24/110 (21%), Positives = 31/110 (28%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G T  +  KY  A     K     E +                   L  A     L  + 
Sbjct: 83  GLTYVQVQKYDLAVPLLIKV---AEANPIN-------FNVR---FRLGVA--LDNLGRFD 127

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A       L L     K     A +Y QM   + A    KKA E+D   
Sbjct: 128 EAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 45.5 bits (109), Expect = 9e-06
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           +      K   Y QA  L  +V D D+ +V        AY++   +D     ++++L   
Sbjct: 13  DKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA 72

Query: 513 PDN 515
           PDN
Sbjct: 73  PDN 75

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 58.7 bits (141), Expect = 4e-09
 Identities = 23/153 (15%), Positives = 57/153 (37%), Gaps = 19/153 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQ----------AKALKV--- 448
            N   + G    A + Y KA++    +    ++     ++Q           +A+++   
Sbjct: 16  ANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT 75

Query: 449 -ACNLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
            A   +N    LK ++D + A +  T+ + ++     A    A  +    ++  A    +
Sbjct: 76  FADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYR 135

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
            AL++ PD  D         + + ++   + + 
Sbjct: 136 TALKLKPDFPDAYCNLAHCLQIVCDWTDYDERM 168

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 28/171 (16%), Positives = 54/171 (31%), Gaps = 25/171 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQAK---ALK-----VACN-- 451
            + L + GK   A   Y++A++    + +  ++ G+  K+      AL+     +  N  
Sbjct: 50  ASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA 109

Query: 452 ----LNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
                +N A   K   +  +A       L L      A    A     + D    +  +K
Sbjct: 110 FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMK 169

Query: 507 KALEIDPDNRDVKLEYKTLKEKMK------EYNKKEAKFYGNMFAKMNTGS 551
           K + I  D  +                    + K  A+ +GN+        
Sbjct: 170 KLVSIVADQLEKNRLPSVHPHHSMLYPLSHGFRKAIAERHGNLCLDKINVL 220

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 46.7 bits (110), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 452 LNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           LNN A   +   + ++A +L  K L++      A    A    Q   L  A    K+A+ 
Sbjct: 12  LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR 71

Query: 511 IDPDN 515
           I P  
Sbjct: 72  ISPTF 76

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 54.0 bits (130), Expect = 4e-09
 Identities = 16/115 (13%), Positives = 41/115 (35%), Gaps = 15/115 (13%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G ++ K    A A+  +E   +          +E ++ +A +   +L     + + + 
Sbjct: 22  EEGLSMLKLANLAEAALAFEAVCQ----------KEPEREEAWR---SL--GLTQAENEK 66

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              A         LD +++      A ++    + + A   ++  L   P    +
Sbjct: 67  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL 121

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 41.3 bits (97), Expect = 1e-04
 Identities = 12/67 (17%), Positives = 21/67 (31%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +      LKL +  +A      V   +    +A         +     LA   +  A  +
Sbjct: 21  MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML 80

Query: 512 DPDNRDV 518
           DP +  V
Sbjct: 81  DPKDIAV 87

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 56.5 bits (137), Expect = 7e-09
 Identities = 17/145 (11%), Positives = 42/145 (28%), Gaps = 18/145 (12%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G ++ K    A A+  +E      +      +           A   +    + + + 
Sbjct: 26  EEGLSMLKLANLAEAALAFEAV---CQAAPEREE-----------AWR-SLGLTQAENEK 70

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
              A         LD +++      A ++    + + A   ++  L   P    +     
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQL---GS 127

Query: 524 TLKEKMKEYNKKEAKFYGNMFAKMN 548
              +   + +    +     FA  N
Sbjct: 128 VNLQADVDIDDLNVQSEDFFFAAPN 152

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 12/110 (10%), Positives = 33/110 (30%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +         A       +         G    +    +      +         +Y+
Sbjct: 96  AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYR 155

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +   L    L+++  + +        Y    + D A  ++++A+E+ PD+
Sbjct: 156 ECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 21/133 (15%), Positives = 41/133 (30%), Gaps = 17/133 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           G     +  Y  A+    +A   +E            A+        N   A        
Sbjct: 179 GVLYNLSNNYDSAAANLRRA---VELRPDD-------AQLW------NKLGATLANGNRP 222

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           ++A     + LD++   V+ +Y  A +Y  M+  DLA   + +A+ +         E   
Sbjct: 223 QEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASR 282

Query: 525 LKEKMKEYNKKEA 537
              +      +  
Sbjct: 283 EATRSMWDFFRML 295

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 47.3 bits (113), Expect = 7e-06
 Identities = 12/67 (17%), Positives = 20/67 (29%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +      LKL +  +A      V        +A         +     LA   +  A  +
Sbjct: 25  MEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARML 84

Query: 512 DPDNRDV 518
           DP +  V
Sbjct: 85  DPKDIAV 91

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 56.6 bits (137), Expect = 7e-09
 Identities = 21/145 (14%), Positives = 51/145 (35%), Gaps = 16/145 (11%)

Query: 379 VSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYAR-----ASKRYEKAVKYIEYDT 433
           + FE+ K + + + +   +   + +E      +A  +        S  Y+K  ++     
Sbjct: 1   MEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDLTSATYDKGYQF----- 55

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
                 +++               +L+  D   A  L    +  D ++++A         
Sbjct: 56  ------EEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQA 109

Query: 494 QMADLDLAEFDIKKALEIDPDNRDV 518
           +     LA   +++ LE+ PDN+  
Sbjct: 110 ENEQELLAISALRRCLELKPDNQTA 134

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 55.4 bits (134), Expect = 2e-08
 Identities = 22/145 (15%), Positives = 42/145 (28%), Gaps = 18/145 (12%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G    + G    A   +E AV+          ++ K  +A      L     + +   
Sbjct: 69  EEGLRRLQEGDLPNAVLLFEAAVQ----------QDPKHMEAW---QYLGTTQAENE--Q 113

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
              A     + L+L   N  AL   A ++   +    A   ++  L   P    +     
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHL---VT 170

Query: 524 TLKEKMKEYNKKEAKFYGNMFAKMN 548
             +E         +K         +
Sbjct: 171 PAEEGAGGAGLGPSKRILGSLLSDS 195

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 19/133 (14%), Positives = 41/133 (30%), Gaps = 18/133 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-LKDY 464
           G     +G+Y +A   +  A   +    +                 L      L      
Sbjct: 224 GVLFNLSGEYDKAVDCFTAA---LSVRPND-------YLLW---NKLGAT---LANGNQS 267

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
           ++A     + L+L    +++ Y    + I +     A     +AL +   +R  + E   
Sbjct: 268 EEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGA 327

Query: 525 LKEKMKEYNKKEA 537
           + E +     + A
Sbjct: 328 MSENI-WSTLRLA 339

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 12/112 (10%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
             +        +A +     ++Y           ++ A    +  +       L    + 
Sbjct: 139 AVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFL 198

Query: 466 QAEKLCTKVLDLDSRNVKA--LYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           + ++L    + LD  ++           +    + D A      AL + P++
Sbjct: 199 EVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 44.3 bits (105), Expect = 8e-05
 Identities = 15/117 (12%), Positives = 30/117 (25%), Gaps = 15/117 (12%)

Query: 400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL 459
           G  K    +L     +    + +  A   +  D +  D                      
Sbjct: 182 GPSKRILGSLLSDSLFLEVKELFLAA---VRLDPTSID-----------PDVQCGLGVLF 227

Query: 460 K-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
               +Y +A    T  L +   +     +           + A    ++ALE+ P  
Sbjct: 228 NLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY 284

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 53.2 bits (129), Expect = 8e-09
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D          A+A     NL NA    K  DY 
Sbjct: 8   GNAYYKQGDYDEAIEYYQKA---LELDPRS-------AEAW---YNLGNA--YYKQGDYD 52

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP +
Sbjct: 53  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 102

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.4 bits (127), Expect = 2e-08
 Identities = 39/110 (35%), Positives = 53/110 (48%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D          A+A     NL NA    K  DY 
Sbjct: 42  GNAYYKQGDYDEAIEYYQKA---LELDPRS-------AEAW---YNLGNA--YYKQGDYD 86

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD R+ +A Y    AY +  D D A    +KALE+DP +
Sbjct: 87  EAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS 136

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 52.4 bits (127), Expect = 1e-08
 Identities = 40/110 (36%), Positives = 54/110 (49%), Gaps = 15/110 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GN  +K G Y  A + Y+KA   +E D +        A+A     NL NA    K  DY 
Sbjct: 16  GNAYYKQGDYDEAIEYYQKA---LELDPNN-------AEAW---YNLGNA--YYKQGDYD 60

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           +A +   K L+LD  N +A Y    AY +  D D A    +KALE+DP+N
Sbjct: 61  EAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNN 110

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 51.2 bits (123), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 2/84 (2%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALE 510
           L      +   D + A +   + L  +     +A Y    AY ++ D   A  + + A+E
Sbjct: 4   LKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNK 534
           ++PD+  ++   K + + +  YNK
Sbjct: 64  LNPDSPALQ-ARKMVMDILNFYNK 86

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 55.5 bits (134), Expect = 2e-08
 Identities = 20/145 (13%), Positives = 40/145 (27%), Gaps = 14/145 (9%)

Query: 374 YEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT 433
           +E    + E + E WD    E  E A   +    +  +  +        EK   +     
Sbjct: 5   FERAKAAVESDTEFWDKMQAEWEEMA---RRNWISENQEAQNQVTVSASEKGYYFHT--- 58

Query: 434 SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYI 493
                   +               +LK  D           +  D  + +A         
Sbjct: 59  --------ENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQA 110

Query: 494 QMADLDLAEFDIKKALEIDPDNRDV 518
           +  +   A   +++ LE+ P+N   
Sbjct: 111 ENENEQAAIVALQRCLELQPNNLKA 135

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 25/141 (17%), Positives = 47/141 (33%), Gaps = 22/141 (15%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E+G    K G         E A   I  D          A+A +    L     + +  +
Sbjct: 70  EEGLKRLKEGDLPVTILFMEAA---ILQDPGD-------AEAWQ---FLGITQAENE--N 114

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------NRD 517
            + A     + L+L   N+KAL   A +Y   +    A   +K  ++ +P       N+ 
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 518 VKL-EYKTLKEKMKEYNKKEA 537
                 + + +   + +  E 
Sbjct: 175 GSPGLTRRMSKSPVDSSVLEG 195

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 17/132 (12%), Positives = 39/132 (29%), Gaps = 15/132 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G     +G++ RA   +  A   +                     N    A        +
Sbjct: 220 GVLFHLSGEFNRAIDAFNAA---LTVRPEDYS-----------LWN-RLGATLANGDRSE 264

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A +  T+ L++    +++ Y    + I +     A  +   AL +   +R+ +      
Sbjct: 265 EAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPA 324

Query: 526 KEKMKEYNKKEA 537
                    + A
Sbjct: 325 ISGNIWAALRIA 336

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 47.7 bits (114), Expect = 6e-06
 Identities = 14/98 (14%), Positives = 37/98 (37%)

Query: 418 ASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL 477
            +  +E+A   +E DT F D+ + + + +     ++             +EK      + 
Sbjct: 1   GAMEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTEN 60

Query: 478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
             ++    +      ++  DL +    ++ A+  DP +
Sbjct: 61  PFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGD 98

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G        +  A   +       +            ++        N       LK+ 
Sbjct: 12  EGVLAADKKDWKGALDAFSAV---QDPH----------SRIC-----FNIGCMYTILKNM 53

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
            +AEK  T+ ++ D     A ++R   Y Q    DLA  D+K+AL     N+ +  +YK 
Sbjct: 54  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--DYKI 111

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMN 548
           L  + K +  +       M+AK  
Sbjct: 112 LGLQFKLFACEVLYNIAFMYAKKE 135

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 52.0 bits (125), Expect = 7e-08
 Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 36/147 (24%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G           A K + ++   I  D          A A              + + Y 
Sbjct: 44  GCMYTILKNMTEAEKAFTRS---INRDKHL-------AVAY-----FQRGMLYYQTEKYD 88

Query: 466 QAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKAL 509
            A K   + L     N                 + LY  A  Y +  +   AE  +  A 
Sbjct: 89  LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148

Query: 510 EIDPDNRDVKLEYKTLKEKMKEYNKKE 536
            +  + R  K++     + M+   K++
Sbjct: 149 SMKSEPRHSKID-----KAMECVWKQK 170

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           N        KD+K A    + V D  S   +  +     Y  + ++  AE    +++  D
Sbjct: 11  NEGVLAADKKDWKGALDAFSAVQDPHS---RICFNIGCMYTILKNMTEAEKAFTRSINRD 67

Query: 513 PDN 515
              
Sbjct: 68  KHL 70

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 51.3 bits (124), Expect = 3e-08
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G   + AG Y  +   +EKA   I+ D                            L+ Y
Sbjct: 12  EGVLQYDAGNYTESIDLFEKA---IQLDPEESK-----------YWL-MKGKALYNLERY 56

Query: 465 KQAEKLCTKVLDL--DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
           ++A      V+++  D  N      +A A   +   ++     +   +++  +
Sbjct: 57  EEAVDCYNYVINVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 9/66 (13%), Positives = 21/66 (31%)

Query: 453 NNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
                +    +Y ++  L  K + LD    K    + +A   +   + A       + + 
Sbjct: 11  LEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI 70

Query: 513 PDNRDV 518
            D  + 
Sbjct: 71  EDEYNK 76

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 54.4 bits (130), Expect = 3e-08
 Identities = 25/168 (14%), Positives = 53/168 (31%), Gaps = 17/168 (10%)

Query: 353 AFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKA 412
                + +   +V   N+T       + F  +     + T  + ++          L K 
Sbjct: 84  IVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQGDSLECMAMTVQILLKL 143

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKL 470
            +   A K  +K     E  T                  L  A   L    +  + A  +
Sbjct: 144 DRLDLARKELKKMQDQDEDAT---------------LTQLATAWVSLAAGGEKLQDAYYI 188

Query: 471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
             ++ D  S  +  L  +A  ++     + AE  +++AL+ D  + + 
Sbjct: 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 47.4 bits (112), Expect = 6e-06
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 11/128 (8%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
            +Y  +  R +  V  ++       E  +          L  A+     ++   A +   
Sbjct: 72  AEYLASHSRRDAIVAELD------REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY 532
           +   L+      +    Q  +++  LDLA  ++KK  + D D    +L    +       
Sbjct: 126 QGDSLE-----CMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGE 180

Query: 533 NKKEAKFY 540
             ++A + 
Sbjct: 181 KLQDAYYI 188

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 55.3 bits (133), Expect = 3e-08
 Identities = 33/178 (18%), Positives = 60/178 (33%), Gaps = 29/178 (16%)

Query: 395 KIEAAGKKKEQGNTLFKAGK--YARASKRYEKAVK----YIEYDTSFG------DEEKKQ 442
           +IE+     E+G T  K G     RA   +EKA++      E+ +         D     
Sbjct: 132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPS 191

Query: 443 AKALK--------------VACNLNNA--ACKLKLKDYKQAEKLCTKVLDLDSRNVKALY 486
             A+               +   L       + + ++  + EKL  + L+        L 
Sbjct: 192 QNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLR 251

Query: 487 RRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY-KTLKEKMKEYNKKEAKFYGNM 543
             A+ Y +  + D A   +KKALE  P+N  +  +     + K+ +            
Sbjct: 252 SAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGK 309

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 19/125 (15%), Positives = 39/125 (31%), Gaps = 13/125 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACK 458
            +    A +Y  A   ++K                 +G+ +  Q K    A +      K
Sbjct: 341 ASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400

Query: 459 LKLKDY------KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID 512
           +  K         + +K+    L  +  + +AL+  A        +  A+ D ++ LE  
Sbjct: 401 INQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460

Query: 513 PDNRD 517
                
Sbjct: 461 SLIPS 465

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 19/141 (13%), Positives = 40/141 (28%), Gaps = 16/141 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
                  G+   A +   KA + I+       E   QA+   +    N A     +    
Sbjct: 58  AYLKHLKGQNEAALECLRKAEELIQ------QEHADQAEIRSLVTWGNYAWVYYHMGRLS 111

Query: 466 QAEKLCTKVLDL--------DSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDN 515
             +    KV  +           + +         ++      + A+   +KALE  P N
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKN 171

Query: 516 RDVKLEYKTLKEKMKEYNKKE 536
            +          ++  +   +
Sbjct: 172 PEFTSGLAIASYRLDNWPPSQ 192

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 26/189 (13%), Positives = 57/189 (30%), Gaps = 34/189 (17%)

Query: 363 LAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRY 422
           L  +P N+ +H ++      K  +  ++           +               A    
Sbjct: 274 LEYIPNNAYLHCQIGCCYRAKVFQVMNLR----------ENGMYGKRKLLELIGHAVAHL 323

Query: 423 EKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV 482
           +KA    E + +                    A+       Y++AE    K    +   V
Sbjct: 324 KKA---DEANDNLFR------------VCSILASLHALADQYEEAEYYFQKEFSKELTPV 368

Query: 483 KA-----LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD---VKLEYKTLKEKMKEYNK 534
                   Y   Q Y QM   D A     + ++I+  +R+   +K + + + +     N 
Sbjct: 369 AKQLLHLRYGNFQLY-QMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNG 427

Query: 535 KEAKFYGNM 543
            +++    +
Sbjct: 428 ADSEALHVL 436

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 2e-07
 Identities = 86/627 (13%), Positives = 169/627 (26%), Gaps = 183/627 (29%)

Query: 4   DFDIPAANEMD---------------ADMDLPDDAPMMK-VGEEKEIGNQGLKKKLVKEG 47
           DF+     E                  + D  D   M K +  ++EI        ++   
Sbjct: 8   DFET---GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEI------DHIIMSK 58

Query: 48  EG--------W---DTPEN------GDEVEVHYT-----------GTLLDGTQFDSSRDR 79
           +         W      E        + + ++Y               +    +   RDR
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDR 118

Query: 80  --STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPE---LAYGESGSPPTIPPNATL 134
             +    F   + NV +     ++   K   A+  + P    L  G  GS  T       
Sbjct: 119 LYNDNQVFA--KYNVSR-----LQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171

Query: 135 QFDVELLS-------WTSVKDICKDGGIIKKILK-----------EGEKWENPK----DL 172
               ++         W ++K+      +++ + K             +   N K     +
Sbjct: 172 L-SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230

Query: 173 DEVLVNY--EARLEDGMVVGKADGVE-------FTVKDGHFCPTLAKAVKTMKKG----- 218
              L         E+ ++V     V+       F +     C  L   + T  K      
Sbjct: 231 QAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLS----CKIL---LTTRFKQVTDFL 281

Query: 219 ----EKVLLAVKPQYGFGEK------GKSASGNEGAVPPNAT----LQIAL--ELVS--- 259
                  +                   K        +P         ++++  E +    
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 260 --WKTVSEITDDK--KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE 315
             W     +  DK   +I+  L   +    P E               +VF    H    
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLE----PAE-------YRKMFDRLSVFPPSAHIPTI 390

Query: 316 QL----FEFKTDE-EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNS 370
            L    F+    +   V++ L +  +  K+ + + ++I    +        EL V   N 
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI---PSI-----YLELKVKLENE 442

Query: 371 -TVHYE-VELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY 428
             +H   V+  +  K  +S D+                      G + +  +  E   + 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDL---------IPPYLDQYFYSHIGHHLKNIEHPE---RM 490

Query: 429 IEYDTSFGDEEKKQAKALKVACNLNNAACKLK--LKDYKQAEKLCTKVLDLDSRNVKA-- 484
             +   F D    + K ++      NA+  +   L+  K  +           R V A  
Sbjct: 491 TLFRMVFLDFRFLEQK-IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL 549

Query: 485 --LYRRAQAYIQMADLDLAEFDIKKAL 509
             L +  +  I     DL    ++ AL
Sbjct: 550 DFLPKIEENLICSKYTDL----LRIAL 572

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 7e-05
 Identities = 52/421 (12%), Positives = 102/421 (24%), Gaps = 170/421 (40%)

Query: 261 KTVSEITDD---KKVIKKILKEGDGFER-----------PNEGAVVKVK---------LI 297
           K V ++      K+ I  I+   D                 E     V+         L+
Sbjct: 36  KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLM 95

Query: 298 GKLQ----------------------DGTVFVKKGHSEEEQ-------LFEFKTDEEQVI 328
             ++                      D  VF K   S  +        L E +  +  +I
Sbjct: 96  SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 329 DGL--------------DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHY 374
           DG+                 V      ++  L         +  S + + +      ++ 
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN------LKNCNSPETV-LEMLQKLLY- 207

Query: 375 EVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARA---------------- 418
             ++      +     N + +I +    + +   L K+  Y                   
Sbjct: 208 --QIDPNWTSRSDHSSNIKLRIHSI---QAELRRLLKSKPYENCLLVLLNVQNAKAWNAF 262

Query: 419 -------------------SKRYEKAVKYIEYDTSFGDEEKKQ--AKALKV--------A 449
                              S      +    +  +   +E K    K L           
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 450 CNLNNAACKL---KLKD-------YKQ--AEKLCTKVLD-----LDSRNVKALYRRAQAY 492
              N     +    ++D       +K    +KL T +++     L+    + ++      
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIESSLNVLEPAEYRKMFD----- 376

Query: 493 IQMADLDLAEF--DIK---KALEI---DPDNRDV-----KLEYKTLKEKMKEYNKKEAKF 539
                  L+ F          L +   D    DV     KL   +L EK      KE+  
Sbjct: 377 ------RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK----QPKESTI 426

Query: 540 Y 540
            
Sbjct: 427 S 427

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 51.7 bits (124), Expect = 3e-07
 Identities = 22/163 (13%), Positives = 49/163 (30%), Gaps = 21/163 (12%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKV 448
           E K+     + E+    FK  +     K+   ++ Y     E          +  +    
Sbjct: 130 ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQC--- 186

Query: 449 ACNLNN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLA 501
               +  A   L LK Y+ A     K   +       + + + LY         +  + A
Sbjct: 187 ---HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243

Query: 502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEY----NKKEAKFY 540
               K+A+ +  ++  +    +      + +       +A  Y
Sbjct: 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEY 286

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 45.6 bits (108), Expect = 2e-05
 Identities = 21/154 (13%), Positives = 42/154 (27%), Gaps = 20/154 (12%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKY----IEYDTSFGDEEKKQAKALKVACNL 452
           E                      K+YE A+ +         +    +        +   L
Sbjct: 175 EHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL-------MGRTL 227

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDLD------SRNVKALYRRAQAYIQMADLDLAEFDI 505
            N   CK     Y+ A     + + +           +A +   Q + ++  +D A    
Sbjct: 228 YNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYH 287

Query: 506 KKALEI--DPDNRDVKLEYKTLKEKMKEYNKKEA 537
            K +       +     E++ LK        +EA
Sbjct: 288 SKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEA 321

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 20/141 (14%), Positives = 52/141 (36%), Gaps = 18/141 (12%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---- 460
           +G       +Y  A K ++KA   + +      +  ++A+       ++ +   +K    
Sbjct: 109 RGMYELDQREYLSAIKFFKKAESKLIF----VKDRIEKAEFF---FKMSESYYYMKQTYF 161

Query: 461 -LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
            +   +QA ++  +    + R ++     A  ++ +   + A    +KA  +    +  +
Sbjct: 162 SMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQ 221

Query: 520 LEYKTL------KEKMKEYNK 534
           L  +TL      K    +Y  
Sbjct: 222 LMGRTLYNIGLCKNSQSQYED 242

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293

 Score = 51.3 bits (122), Expect = 3e-07
 Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 18/139 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            N   + G   +    +E+ +K +        E     +   V    N+A        Y+
Sbjct: 162 ANIYAENGYLKKGIDLFEQILKQL--------EALHDNEEFDVKVRYNHAKALYLDSRYE 213

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--------DLDLAEFDIKKALEIDPDNRD 517
           ++     K +++ S  + ++    Q Y Q          +    E   KKA     D  +
Sbjct: 214 ESLYQVNKAIEI-SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF-DILE 271

Query: 518 VKLEYKTLKEKMKEYNKKE 536
           +    + L  K+       
Sbjct: 272 MHAYKEALVNKISRLEHHH 290

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 50.4 bits (120), Expect = 1e-06
 Identities = 25/169 (14%), Positives = 55/169 (32%), Gaps = 11/169 (6%)

Query: 350 PEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKK----EQ 405
             ++ G       +A +     +     +   E+E +      +  ++     +    E 
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFET 67

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
            +      K     +  EK ++ +       +E    A+    A  L   A  +      
Sbjct: 68  HSVEDAGRKQQDVQEEMEKTLQQM-------EEVLGSAQVEAQALMLKGKALNVTPDYSP 120

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
           +AE L +K + L+   V+A  +  + Y +  D+  A      AL    +
Sbjct: 121 EAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN 169

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 28/186 (15%), Positives = 49/186 (26%), Gaps = 45/186 (24%)

Query: 406 GNTLFKAGKYARASKRYEKAVK--------------YIEYDTSFGDEEKKQA-------- 443
           G   +K G    A   +  A+                 +  T  GDE  +          
Sbjct: 144 GEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAK 203

Query: 444 KALKVA-------CNLNNA------ACKLKLKDYKQAEKLCTKVLDLDSR---NVKALYR 487
            A+++          L NA            K  +QA     +   +D +   N      
Sbjct: 204 LAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN 263

Query: 488 RAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VKLEYKTLKEKMKEYNKKEAKFY 540
           RA  +        A     +A  +DP   +       +      L   ++   K + K  
Sbjct: 264 RATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKTKPKKL 323

Query: 541 GNMFAK 546
            +M   
Sbjct: 324 QSMLGS 329

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.0 bits (106), Expect = 4e-05
 Identities = 20/149 (13%), Positives = 47/149 (31%), Gaps = 17/149 (11%)

Query: 396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVK--YIEYDTSF--GDEEKKQAKALKVACN 451
           +    +         +  +     ++ +  V   Y   D+ F     E    K   V   
Sbjct: 24  MTGGQQMGRGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ-- 81

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL-AEFDIKKALE 510
                     ++ ++  +   +VL       +AL  + +A     D    AE  + KA++
Sbjct: 82  ----------EEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131

Query: 511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           ++P+  +   +   +  K  +       F
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCF 160

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 12/112 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G        Y+ +   Y +A++    +          A  L    + +            
Sbjct: 51  GEYYLWQNDYSNSLLAYRQALQLRGENAEL---YAALATVLYYQASQH---------MTA 98

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
           Q   +  K L LDS  + AL   A      A+   A    +K ++++    +
Sbjct: 99  QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRIN 150

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.4 bits (97), Expect = 2e-04
 Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 18/119 (15%)

Query: 403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK 462
           ++  +            +  +  ++             + ++              L   
Sbjct: 14  RDPLHQFASQQNPEAQLQALQDKIR----------ANPQNSEQW-----ALLGEYYLWQN 58

Query: 463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDL---AEFDIKKALEIDPDNRDV 518
           DY  +     + L L   N +     A      A   +       I KAL +D +    
Sbjct: 59  DYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITA 117

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 6/64 (9%), Positives = 24/64 (37%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              ++ +   +     +  + +N +      + Y+   D   +    ++AL++  +N ++
Sbjct: 21  ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL 80

Query: 519 KLEY 522
               
Sbjct: 81  YAAL 84

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 20/122 (16%), Positives = 36/122 (29%), Gaps = 9/122 (7%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-A 455
           + +G    +   L + G   R +  ++ A +   +              L  + N    A
Sbjct: 57  QKSGDHTAEHRALHQVGMVERMAGNWDAARRC--FLEERELLASLPEDPLAASANAYEVA 114

Query: 456 ACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKAL 509
              L   D   A +   K L       D   +  A         Q  +L  A+    +A 
Sbjct: 115 TVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174

Query: 510 EI 511
           +I
Sbjct: 175 DI 176

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203

 Score = 43.0 bits (102), Expect = 8e-05
 Identities = 16/113 (14%), Positives = 33/113 (29%), Gaps = 16/113 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G       ++  A   ++      +     GD    + +AL     +          ++ 
Sbjct: 33  GYVYAFMDRFDEARASFQAL---QQQAQKSGDHTA-EHRAL---HQVGMVERMAG--NWD 83

Query: 466 QAEKLCTKVLDL------DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            A +   +  +L      D        Y  A   +   DL  A  + +K+L  
Sbjct: 84  AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.5 bits (114), Expect = 3e-06
 Identities = 18/113 (15%), Positives = 34/113 (30%), Gaps = 12/113 (10%)

Query: 406 GNTLFKAGKYARASKRYEKAVK----YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL 461
             T  K G    A +  +  V     Y+       +       A            +   
Sbjct: 46  ARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE-------AYVALYR-QAEDRERGK 97

Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
              +QA  +      ++ R      +R   Y  + + D AE  +K+AL ++  
Sbjct: 98  GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT 150

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.1 bits (113), Expect = 4e-06
 Identities = 22/121 (18%), Positives = 43/121 (35%), Gaps = 26/121 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G  L+  G+Y  A   +E+A   ++ +           +AL     L     +LKL    
Sbjct: 12  GVQLYALGRYDAALTLFERA---LKENPQD-------PEAL---YWLART--QLKLGLVN 56

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPD 514
            A +    ++    R +      ++AY+ +             L+ A   +K A  ++P 
Sbjct: 57  PALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR 116

Query: 515 N 515
            
Sbjct: 117 Y 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 42.1 bits (100), Expect = 2e-04
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           L        L  Y  A  L  + L  + ++ +ALY  A+  +++  ++ A  + K  +  
Sbjct: 9   LRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR 68

Query: 512 DPDN 515
            P  
Sbjct: 69  TPRY 72

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 21/139 (15%), Positives = 42/139 (30%), Gaps = 18/139 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                    Y +A    E A   +E      ++         +A +L N A    +  D 
Sbjct: 189 AGNYDDFKHYDKALPHLEAA---LELAMDIQNDRF-------IAISLLNIANSYDRSGDD 238

Query: 465 KQAEKLCTKVLDL-----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNRD 517
           + A +   K   +          K L+  +    +      A   I++ L+      ++ 
Sbjct: 239 QMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKF 298

Query: 518 VKLEYKTLKEKMKEYNKKE 536
            K  +  L+   KE   + 
Sbjct: 299 YKELFLFLQAVYKETVDER 317

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 48.3 bits (115), Expect = 4e-06
 Identities = 24/159 (15%), Positives = 54/159 (33%), Gaps = 14/159 (8%)

Query: 393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNL 452
           E+++       E+    FK  +     K+   ++ +     +    +     +++   +L
Sbjct: 128 EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH--ILQALDIYQNHPLYSIRTIQSL 185

Query: 453 NN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDI 505
              A      K Y +A       L+L     + R +  +L   A +Y +  D  +A    
Sbjct: 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245

Query: 506 KKALEIDPDNRDVKLEYKTLKEKMKEY----NKKEAKFY 540
           +KA ++  +     L  K L             ++A  +
Sbjct: 246 QKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQF 283

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.9 bits (101), Expect = 2e-04
 Identities = 21/137 (15%), Positives = 41/137 (29%), Gaps = 20/137 (14%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
             Y    K Y       E   +    +KK    LK          +   K+Y +A     
Sbjct: 66  LDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYR 125

Query: 473 KVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK 526
           +          D    +  ++ A+AY  M    ++ + I +AL+I               
Sbjct: 126 EAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDI--------------Y 171

Query: 527 EKMKEYNKKEAKFYGNM 543
           +    Y+ +  +    +
Sbjct: 172 QNHPLYSIRTIQSLFVI 188

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378

 Score = 42.1 bits (99), Expect = 3e-04
 Identities = 22/143 (15%), Positives = 49/143 (34%), Gaps = 22/143 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G   F   +Y  A   Y +A K + +      ++ ++A+          A     +K  
Sbjct: 107 RGMYEFDQKEYVEAIGYYREAEKELPFV----SDDIEKAEFHF-----KVAEAYYHMKQT 157

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-------DLDLAEFDIKKALEIDPDNRD 517
             +     + LD+   +     R  Q+   +A         D A   ++ ALE+  D ++
Sbjct: 158 HVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN 217

Query: 518 VKLEYKTL------KEKMKEYNK 534
            +    +L       ++  +   
Sbjct: 218 DRFIAISLLNIANSYDRSGDDQM 240

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 43.4 bits (103), Expect = 9e-06
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           LK  +  +A  L  ++++ D   V   Y   + Y ++   D A     + +E+  +    
Sbjct: 18  LKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77

Query: 519 KLEYKTLKEKMKEYNKKEA 537
               K L E      K E 
Sbjct: 78  ----KDLSELQDAKLKAEG 92

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 46.8 bits (111), Expect = 9e-06
 Identities = 20/150 (13%), Positives = 45/150 (30%), Gaps = 12/150 (8%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
              G        L +AGK         KAV    Y  +    E ++            + 
Sbjct: 107 VENGTPDTAAMALDRAGKLME-PLDLSKAVHL--YQQAAAVFENEERLRQAAELIGKASR 163

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALE 510
             ++ + + +A     K   +           K    +    +  AD   A+  ++++  
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223

Query: 511 ID--PDNRDVKLEYKTLKEKMKEYNKKEAK 538
           I     + D     + L +   E ++++  
Sbjct: 224 IPGFSGSEDCAA-LEDLLQAYDEQDEEQLL 252

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 45.3 bits (107), Expect = 2e-05
 Identities = 23/135 (17%), Positives = 45/135 (33%), Gaps = 9/135 (6%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
                         +AG   +  +R  +AV+YIE  +    E      A   A  L+ A 
Sbjct: 67  ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTA---AMALDRAG 123

Query: 457 CKLKLKDYKQAEKLCTKVLDL-----DSRNVKALYRR-AQAYIQMADLDLAEFDIKKALE 510
             ++  D  +A  L  +   +       R    L  + ++  ++    D A   ++K   
Sbjct: 124 KLMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183

Query: 511 IDPDNRDVKLEYKTL 525
           +  +  +    YK  
Sbjct: 184 MYKEMENYPTCYKKC 198

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307

 Score = 44.9 bits (106), Expect = 4e-05
 Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 7/113 (6%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
              E   + ++    + KA +     +++++A   ++ + S   E +      K      
Sbjct: 143 AVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ- 201

Query: 454 NAACKLKLKDYKQAEKLCTKVLDL----DSRNVKALYRRAQAYIQMADLDLAE 502
               +L   DY  A+K   +   +     S +  AL    QAY +  D +   
Sbjct: 202 -VLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAYDEQ-DEEQLL 252

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 32/145 (22%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L  AG        ++ A++         ++ +  +        L NA     L DY
Sbjct: 54  EGERLCNAGDCRAGVAFFQAAIQA------GTEDLRTLSAIY---SQLGNAY--FYLGDY 102

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
            +A +     L L     D     K+          M   D A    ++ L +       
Sbjct: 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTL------- 155

Query: 519 KLEYKTLKEKMKEYNKKEAKFYGNM 543
               + L ++       E +   N+
Sbjct: 156 ---ARQLGDR-----LSEGRALYNL 172

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 15/112 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GNT +  G +  A + +++    +     FGD    + +A     NL N+   + L  ++
Sbjct: 230 GNTYYLLGDFQAAIEHHQER---LRIAREFGD-RAAERRAN---SNLGNSH--IFLGQFE 280

Query: 466 QAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            A +   + L L     +     ++ Y     Y  + + + A     + L I
Sbjct: 281 DAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 16/113 (14%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GN+    G++  A++ Y++    +      G+ E         A +  +       L ++
Sbjct: 270 GNSHIFLGQFEDAAEHYKRT---LALAVELGEREV-------EAQSCYSLGNTYTLLHEF 319

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
             A +   + L +     D     +A +    A+  +   + A    ++ L++
Sbjct: 320 NTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 1/83 (1%)

Query: 455 AACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
                + + +  A       LD D     A     +      D   A    +  L     
Sbjct: 26  GKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQS 85

Query: 515 NRDVKLEYKTLKEKMKEYNKKEA 537
             D ++  K L+  ++   +++A
Sbjct: 86  RGDQQV-VKELQVFLRRLAREDA 107

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 9/43 (20%), Positives = 18/43 (41%)

Query: 472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
             +L   + N+   +   + Y +    D A   ++ AL+ DP 
Sbjct: 9   EAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT 51

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 22/113 (19%), Positives = 36/113 (31%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L K+G        +E AV+         ++ K  +        L        L DY
Sbjct: 15  EGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIY---SQL--GNAYFYLHDY 63

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            +A +     L L     D     KA          + + D A    ++ L+I
Sbjct: 64  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 116

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 30/132 (22%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALK--------- 447
           +  G K  +       G        +E A +Y +             K L          
Sbjct: 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK-------------KTLLLARQLKDRA 264

Query: 448 -VACNLNN-AACKLKLKDYKQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLD 499
             A +  +       L+DY++A     K L +     D     +A +    AY  + + D
Sbjct: 265 VEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD 324

Query: 500 LAEFDIKKALEI 511
            A    +K LEI
Sbjct: 325 QAMHFAEKHLEI 336

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 29/141 (20%), Positives = 52/141 (36%), Gaps = 21/141 (14%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           GNT +  G +  A   +E+ +   +    FGD +  + +A     NL NA     L +++
Sbjct: 194 GNTHYLLGNFRDAVIAHEQRLLIAK---EFGD-KAAERRAY---SNLGNAYI--FLGEFE 244

Query: 466 QAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK 519
            A +   K L L     D     ++ Y     Y  + D + A     K L I  +  D  
Sbjct: 245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304

Query: 520 LEYKTLK------EKMKEYNK 534
            E +           +  +++
Sbjct: 305 GEGRACWSLGNAYTALGNHDQ 325

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 13/111 (11%)

Query: 413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT 472
           G  A+A   YEKA+         G + K  A+       L   +    L +Y++AE +  
Sbjct: 4   GLEAQAVPYYEKAIAS-------GLQGKDLAECY-----LGLGSTFRTLGEYRKAEAVLA 51

Query: 473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK 523
             +     +       A     +   +     + K +    D+  ++  YK
Sbjct: 52  NGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQ-SYK 101

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 44.7 bits (105), Expect = 5e-05
 Identities = 12/56 (21%), Positives = 22/56 (39%)

Query: 460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN 515
            L+D  Q  +    +L+ D++N  A   R     +    D     + + L+ D  N
Sbjct: 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRN 233

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} Length = 176

 Score = 43.0 bits (101), Expect = 6e-05
 Identities = 12/73 (16%), Positives = 24/73 (32%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           L   +  L+  ++ QA  +   + D           +A   ++    +LA+  +      
Sbjct: 10  LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE 69

Query: 512 DPDNRDVKLEYKT 524
             DN    L  K 
Sbjct: 70  YQDNSYKSLIAKL 82

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.8 bits (104), Expect = 9e-05
 Identities = 24/113 (21%), Positives = 38/113 (33%), Gaps = 17/113 (15%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G  L K+G        +E AV+         ++ K  +        L NA     L DY
Sbjct: 11  EGERLCKSGDCRAGVSFFEAAVQV------GTEDLKTLSAIY---SQLGNAYF--YLHDY 59

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
            +A +     L L     D     KA          + + D A    ++ L+I
Sbjct: 60  AKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDI 112

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 43.0 bits (102), Expect = 2e-04
 Identities = 25/142 (17%), Positives = 49/142 (34%), Gaps = 23/142 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GNT +  G +  A   +E+ +   +    FGD+              +N     + L ++
Sbjct: 190 GNTHYLLGNFRDAVIAHEQRLLIAK---EFGDKA-------AERRAYSNLGNAYIFLGEF 239

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
           + A +   K L L     D     ++ Y     Y  + D + A     K L I  + +D 
Sbjct: 240 ETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299

Query: 519 KLEYKTLK------EKMKEYNK 534
             E +           +  +++
Sbjct: 300 IGEGRACWSLGNAYTALGNHDQ 321

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 25/113 (22%), Positives = 41/113 (36%), Gaps = 17/113 (15%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
           GN     G++  AS+ Y+K    +       D           A +  +       L+DY
Sbjct: 230 GNAYIFLGEFETASEYYKKT---LLLARQLKDRAV-------EAQSCYSLGNTYTLLQDY 279

Query: 465 KQAEKLCTKVLDL-----DSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           ++A     K L +     D     +A +    AY  + + D A    +K LEI
Sbjct: 280 EKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292

 Score = 42.3 bits (99), Expect = 2e-04
 Identities = 24/138 (17%), Positives = 49/138 (35%), Gaps = 6/138 (4%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           + AG + E GNT  +A K  ++      AV  +E          +  +    A       
Sbjct: 68  KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRG---ANFKFELG 124

Query: 457 --CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD 514
              +  L DY +A        +      +++    + +I+ ADL   +    +A +I   
Sbjct: 125 EILENDLHDYAKAIDCYELAGE-WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSK 183

Query: 515 NRDVKLEYKTLKEKMKEY 532
                +  +  +  +K+Y
Sbjct: 184 LIKSSMGNRLSQWSLKDY 201

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 42.4 bits (99), Expect = 3e-04
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 31/203 (15%)

Query: 356 SAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKY 415
               Q+ L  + P+          +F +  +      ++ +  A +   +         Y
Sbjct: 179 PQRMQETLQKILPHRGALLT----NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY 234

Query: 416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVA--------------CNLNNAACKLKL 461
           ARA    EKA+  I   +    +EK+ A                         A   L  
Sbjct: 235 ARA----EKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVK 290

Query: 462 KDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL- 520
               ++ +     +DL+  +        + Y        A      A  + P    +   
Sbjct: 291 GKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYWI 349

Query: 521 -------EYKTLKEKMKEYNKKE 536
                      +   + ++   E
Sbjct: 350 ENGIFQTSVPYVVPYLDKFLASE 372

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311

 Score = 41.8 bits (99), Expect = 4e-04
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                   KY  A+     A+   E   + G +         VA  LNN A    K   Y
Sbjct: 76  ALVYRDQNKYKDAANLLNDALAIRE--KTLGKDH------PAVAATLNNLAVLYGKRGKY 127

Query: 465 KQAEKLCTKVLDLDSRNV---------KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           K+AE LC + L++    V         K L   A         +  E+  ++ALEI
Sbjct: 128 KEAEPLCKRALEI-REKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 38.5 bits (91), Expect = 4e-04
 Identities = 27/65 (41%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE 510
           NL NA    K  DY +A +   K L+LD  N +A Y    AY +  D D A    +KALE
Sbjct: 14  NLGNA--YYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71

Query: 511 IDPDN 515
           +DP+N
Sbjct: 72  LDPNN 76

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 5e-04
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 14/113 (12%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL-KLKDY 464
            +   K GKY  A   Y++ +    ++  FG                 +A  +       
Sbjct: 176 ASCYLKQGKYQDAETLYKEILTRA-HEKEFGSVN------GDNKPIWMHAEEREESKDKR 228

Query: 465 KQAEK-----LCTKVLDLDSRNV-KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           + +          K   +DS  V   L      Y +   L+ A      A   
Sbjct: 229 RDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283

 Score = 41.0 bits (97), Expect = 6e-04
 Identities = 29/116 (25%), Positives = 41/116 (35%), Gaps = 19/116 (16%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNN-AACKLKLKDY 464
                   KY  A+     A+   E   + G +         VA  LNN A    K   Y
Sbjct: 50  ALVYRDQNKYKEAAHLLNDALAIRE--KTLGKDH------PAVAATLNNLAVLYGKRGKY 101

Query: 465 KQAEKLCTKVLDLDSRNV---------KALYRRAQAYIQMADLDLAEFDIKKALEI 511
           K+AE LC + L++    V         K L   A         +  E+  ++ALEI
Sbjct: 102 KEAEPLCKRALEI-REKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEI 156

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	557
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	100.0
3jxv_A	356	70 kDa peptidyl-prolyl isomerase; FKBP- binding do	100.0
1q1c_A	280	FK506-binding protein 4; rotamase, TPR repeat, nuc	100.0
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.93
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.91
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.91
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.91
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.91
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.9
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.9
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.9
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.9
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.9
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.89
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.89
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.89
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.88
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.88
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.88
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.88
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.88
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.88
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.88
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.87
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.87
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.87
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.84
1r9h_A	135	FKB-6, FK506 binding protein family; structural ge	99.83
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.83
3o5e_A	144	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.83
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.82
3kz7_A	119	FK506-binding protein 3; FKPB ppiase rapamycin, is	99.82
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.82
2f4e_A	180	ATFKBP42; FKBP-like, alpha-beta, signaling protein	99.82
3o5q_A	128	Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506	99.81
2lkn_A	165	AH receptor-interacting protein; FKBP-type domain,	99.81
2ppn_A	107	FK506-binding protein 1A; high resolution protein	99.8
2jwx_A	157	FKBP38NTD, FK506-binding protein 8 variant; apopto	99.8
2awg_A	118	38 kDa FK-506 binding protein; FKBP-type, ppiase,	99.79
1yat_A	113	FK506 binding protein; HET: FK5; 2.50A {Saccharomy	99.79
2lgo_A	130	FKBP; infectious disease, isomerase, giardiasis, s	99.78
4dip_A	125	Peptidyl-prolyl CIS-trans isomerase FKBP14; struct	99.78
2y78_A	133	Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase,	99.78
3b7x_A	134	FK506-binding protein 6; isomerase, repeat, rotama	99.78
2vn1_A	129	70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR	99.78
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.77
3oe2_A	219	Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase,	99.77
2d9f_A	135	FK506-binding protein 8 variant; FKBP, rapamycin,	99.77
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.75
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.75
3uf8_A	209	Ubiquitin-like protein SMT3, peptidyl-prolyl CIS-	99.75
1jvw_A	167	Macrophage infectivity potentiator; chagas disease	99.74
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.74
1u79_A	129	FKBP-type peptidyl-prolyl CIS-trans isomerase 3; T	99.74
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.74
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.73
1fd9_A	213	Protein (macrophage infectivity potentiator prote;	99.72
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.72
2pbc_A	102	FK506-binding protein 2; endoplasmic reticulum, is	99.72
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.71
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.7
1q6h_A	224	FKBP-type peptidyl-prolyl CIS-trans isomerase FKP;	99.69
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.68
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.65
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.63
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.63
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.62
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.58
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.57
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.57
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.54
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.51
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.5
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.5
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.5
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.47
1hxv_A	113	Trigger factor; FKBP fold, ppiase, chaperone; NMR	99.46
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.46
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.45
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.45
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.45
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.44
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.44
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.43
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.43
2kr7_A	151	FKBP-type peptidyl-prolyl CIS-trans isomerase SLY;	99.42
4dt4_A	169	FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer;	99.41
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.4
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.4
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.39
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.39
3pr9_A	157	FKBP-type peptidyl-prolyl CIS-trans isomerase; FKB	99.39
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.39
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.36
2kfw_A	196	FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD	99.36
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.35
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.35
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.35
1ix5_A	151	FKBP; ppiase, isomerase; NMR {Methanothermococcust	99.35
2k8i_A	171	SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase,	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
3prb_A	231	FKBP-type peptidyl-prolyl CIS-trans isomerase; cha	99.31
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.3
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.3
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.3
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.3
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.29
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.28
3cgm_A	158	SLYD, peptidyl-prolyl CIS-trans isomerase; chapero	99.27
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	99.27
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.26
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.24
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.23
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.23
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.22
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.21
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.21
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.2
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.19
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.18
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.18
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.18
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.17
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.17
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.16
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.16
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.15
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.15
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.15
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.15
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.14
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.14
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.13
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.13
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.12
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.12
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.12
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.12
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.11
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.1
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.1
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.1
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.08
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	99.07
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.07
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.06
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.06
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.06
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.05
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.04
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.04
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	99.01
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.99
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.99
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.98
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.98
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.97
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.97
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.97
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.95
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.95
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.94
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.93
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.93
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.92
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.92
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.92
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.9
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.9
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.9
1w26_A	432	Trigger factor, TF; chaperone, protein folding, ri	98.9
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.9
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.89
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.89
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.88
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.87
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.86
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.86
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.85
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.85
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.85
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.85
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.84
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.83
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.8
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.8
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.78
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.78
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.77
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.77
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.77
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.75
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.75
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.75
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.75
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.71
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.71
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.7
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.65
1t11_A	392	Trigger factor, TF; helix-turn-helix, four-helix-b	98.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.63
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.62
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.6
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.6
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.6
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.6
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.59
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.56
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.56
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.53
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.53
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.52
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.47
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.46
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.46
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.42
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.41
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.4
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.39
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.34
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.34
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.33
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.33
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.33
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.29
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.27
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.24
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.19
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.16
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.16
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.15
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.09
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.06
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	98.05
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	98.03
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.02
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.98
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	97.96
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.89
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.86
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.85
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.84
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.76
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.69
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.48
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.42
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.29
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.29
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.2
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.19
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.16
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	96.73
3gty_X	433	Trigger factor, TF; chaperone-client complex, cell	96.65
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.55
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.49
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.39
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	96.36
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.35
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.03
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.66
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.41
3mv2_A	325	Coatomer subunit alpha; vesicular membrane coat CO	94.96
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.87
3mkr_B	320	Coatomer subunit alpha; tetratricopeptide repeats	94.87
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	94.86
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	94.42
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.39
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	93.86
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	93.8
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	93.41
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	92.73
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	92.53
2cpt_A	117	SKD1 protein, vacuolar sorting protein 4B; MIT, he	91.54
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	90.64
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	90.0
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.64
2v6x_A	85	Vacuolar protein sorting-associated protein 4; pro	88.45
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.41
1wfd_A	93	Hypothetical protein 1500032H18; MIT domain, struc	88.32
4a5x_A	86	MITD1, MIT domain-containing protein 1; protein tr	86.48
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	85.53
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.52
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	85.41
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.15
2dl1_A	116	Spartin; SPG20, MIT, structural genomics, NPPSFA,	84.63
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	83.5
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	83.25
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	82.02
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	81.91
2crb_A	97	Nuclear receptor binding factor 2; NRBF-2, MIT dom	81.42
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	80.87

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=4.7e-66  Score=525.70  Aligned_cols=355  Identities=81%  Similarity=1.270  Sum_probs=222.7

Q ss_pred             cCcceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccc
Q 008689           27 KVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKG  106 (557)
Q Consensus        27 ~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~G  106 (557)
                      +++++..++++|++|+++++|+|+..|..||.|.+||++++.||++|++|+.+++|+.|.+|.+++++||+++|.+|++|
T Consensus         1 ~~~~~~~~~~~Gl~~~i~~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~~~lG~g~~i~g~e~~l~gm~~G   80 (356)
T 3jxv_A            1 KVGEENEIGKQGLKKKLLKEGEGWDTPEVGDEVEVHYTGTLLDGKKFDSSRDRDDTFKFKLGQGQVIKGWDQGIKTMKKG   80 (356)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCccceECCCCeEEEEEEeecCCccCCCCCEEEEEEEEEECCCCEEEEcccCCCcEEEEeCCCccchHHHHHHhcCCCC
Confidence            36778889999999999999999778999999999999999999999999987789999999999999999999999999


Q ss_pred             cEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCC
Q 008689          107 ENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG  186 (557)
Q Consensus       107 e~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g  186 (557)
                      ++++|+|||++|||+.+.++.||+|++++|+|+|++|..+.++..++.+.++++.+|.|+.+|..++.|++||+++++||
T Consensus        81 e~~~~~ip~~~aYG~~g~~~~Ip~~~~l~f~vel~~~~~~~di~~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dg  160 (356)
T 3jxv_A           81 ENALFTIPPELAYGESGSPPTIPANATLQFDVELLSWTSVRDIAKDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDG  160 (356)
T ss_dssp             -------------------------------------CCEEETTSSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTS
T ss_pred             CEEEEEEChHHhCCCCCCCCCcCCCCEEEEEeeEEeeecccccccCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCC
Confidence            99999999999999999988999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeee
Q 008689          187 MVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEI  266 (557)
Q Consensus       187 ~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~  266 (557)
                      ++|+++.++.|.+|.+++++||+++|.+|+.||++++.|||+++||+.|.+.......|||+++|+|+|+|++|....++
T Consensus       161 t~~~~~~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv  240 (356)
T 3jxv_A          161 TVVSKSEGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVKPQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEI  240 (356)
T ss_dssp             CEEEEEEEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEECGGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEE
T ss_pred             CEEeccCCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEChHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEeccccc
Confidence            99999999999999999999999999999999999999999999999998866666789999999999999999999999


Q ss_pred             eCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEE
Q 008689          267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALL  346 (557)
Q Consensus       267 ~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v  346 (557)
                      +.|.+++++++++|.|..+|..|+.|+|||++++.||++|+++.. ...+|++|.+|.+.+|+||+.+|..|++||++.|
T Consensus       241 ~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~fd~~~~-~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v  319 (356)
T 3jxv_A          241 GDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVFLKKGH-DEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALV  319 (356)
T ss_dssp             STTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEEEEESC-TTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEE
T ss_pred             ccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEEeeccc-cCCcCEEEEECCCccchHHHHHHhCCCCCCEEEE
Confidence            999999999999999988999999999999999999999998753 3578999999999999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (557)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~  383 (557)
                      +|++.++||+.+... ...||++++++|+|+|.++.+
T Consensus       320 ~ip~~~aYG~~~~~~-~~~Ip~~~~l~f~vel~~~~~  355 (356)
T 3jxv_A          320 TIPPEYAYGSTESKQ-DAIVPPNSTVIYEVELVSFVK  355 (356)
T ss_dssp             EECGGGTTTTSCEES-SSEECTTCCEEEEEEEEEEEC
T ss_pred             EEChHHccCCCCcCC-CCcCCcCCeEEEEEEEEEEEc
Confidence            999999999987543 256899999999999999874

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3.9e-57  Score=479.07  Aligned_cols=385  Identities=36%  Similarity=0.635  Sum_probs=336.2

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (557)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp  226 (557)
                      .++++.++++.+|+|...+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            678999999999999777999999999999999999999986    6999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEE
Q 008689          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVF  306 (557)
Q Consensus       227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~  306 (557)
                      |+++||+.|.+     +.|||+++|+|+|+|++|.. .++..|++++++++++|.|..+|..|+.|+|||++++ +|++|
T Consensus       109 ~~~~yg~~g~~-----~~i~~~~~l~~~v~l~~~~~-~~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f  181 (457)
T 1kt0_A          109 PEYAYGSAGSL-----PKIPSNATLFFEIELLDFKG-EDLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMF  181 (457)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEE
T ss_pred             hHHhccccCCC-----CCCCCCCcEEEEEeeceeec-ccccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEE
Confidence            99999998876     68999999999999999976 4777899999999999999889999999999999999 89999


Q ss_pred             EecCCCCCcccEEEEcCccc---hhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689          307 VKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (557)
Q Consensus       307 ~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~  383 (557)
                      +++       +++|.+|++.   ++++|+.|+..|++||++.+.++|.++|+..+...  ..+|+++.+.|.++|..+.+
T Consensus       182 ~~~-------~~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~~--~~ip~~~~l~y~~~l~~~~~  252 (457)
T 1kt0_A          182 DCR-------DVAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  252 (457)
T ss_dssp             EEE-------EEEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBGG--GTBCTTCCEEEEEEEEEEEC
T ss_pred             ecC-------ceEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCcc--cCCCCCCEEEEEhhhhhccc
Confidence            853       4899999874   89999999999999999999999999999988753  36899999999999999999


Q ss_pred             cccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC
Q 008689          384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD  463 (557)
Q Consensus       384 ~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~  463 (557)
                      ....|.+...+++..+..++++|+.+++.++|.+|+.+|++|+++.+......+++..+...+...+|+|+|.||+++++
T Consensus       253 A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~  332 (457)
T 1kt0_A          253 AKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLRE  332 (457)
T ss_dssp             CCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             CcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999887777788888888999999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (557)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~m  543 (557)
                      |++|+.+|++||+++|++.++||++|.+|..+++|++|+.+|++|++++|++..++..+..+..++.+.+++++++|++|
T Consensus       333 ~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~  412 (457)
T 1kt0_A          333 YTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM  412 (457)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhccCCC
Q 008689          544 FAKMNTGS  551 (557)
Q Consensus       544 f~~~~~~~  551 (557)
                      |.++....
T Consensus       413 f~k~~~~d  420 (457)
T 1kt0_A          413 FKKFAEQD  420 (457)
T ss_dssp             --------
T ss_pred             Hhhhhhcc
Confidence            99876543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=100.00  E-value=3.4e-43  Score=372.14  Aligned_cols=375  Identities=31%  Similarity=0.493  Sum_probs=274.0

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      +++|+.|+++++|+|...|..||.|.|||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus        29 ~~~g~~~~~~~~G~g~~~~~~gd~v~v~y~~~~~~g~~~dss~~~~~p~~~~~g~~~~i~g~~~~l~~m~~Ge~~~~~i~  108 (457)
T 1kt0_A           29 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKRGEICHLLCK  108 (457)
T ss_dssp             ----CEEEC--------CCCBTCEEEEEEEEEC-----CBC------CEEEETTSTTSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCcEEEEEEECCCCCCCCCCCCEEEEEEEEEECCCCEEeccCCCCCCeEEEeCCcchhhHHHHHHhhCCCCCEEEEEEC
Confidence            68999999999999954599999999999999989999999988778999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccc
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~  194 (557)
                      |+++||..+.++.||++++++|+|+|++|... ++..+++++++++..|.|+..|..|+.|++||++++ +|++|++ .+
T Consensus       109 ~~~~yg~~g~~~~i~~~~~l~~~v~l~~~~~~-~~~~dg~~~k~i~~~g~~~~~p~~g~~V~v~y~g~~-~g~~f~~-~~  185 (457)
T 1kt0_A          109 PEYAYGSAGSLPKIPSNATLFFEIELLDFKGE-DLFEDGGIIRRTKRKGEGYSNPNEGATVEIHLEGRC-GGRMFDC-RD  185 (457)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ETTSSSSEEEEEEECCBCSCCCCTTCEEEEEEEEEE-TTEEEEE-EE
T ss_pred             hHHhccccCCCCCCCCCCcEEEEEeeceeecc-cccCCcceEEEEEecCCCCCCCCCCCEEEEEEEEEe-CCeEEec-Cc
Confidence            99999999998899999999999999999865 566888999999999999999999999999999999 8888776 57


Q ss_pred             eEEEecCC---CCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcc
Q 008689          195 VEFTVKDG---HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKK  271 (557)
Q Consensus       195 ~~~~~g~~---~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~  271 (557)
                      +.|.+|.|   .++++|+.|+..|+.|+++.|.++|.++|+..|.+    ...|||++++.|.+.+.++..-.+...   
T Consensus       186 ~~f~~g~g~~~~v~~~~e~al~~~~~ge~~~l~i~P~~ay~~~g~~----~~~ip~~~~l~y~~~l~~~~~A~~~~~---  258 (457)
T 1kt0_A          186 VAFTVGEGEDHDIPIGIDKALEKMQREEQCILYLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFEKAKESWE---  258 (457)
T ss_dssp             EEEETTCGGGGTCCHHHHHHHTTCCBTCEEEEEECGGGTTCSSCBG----GGTBCTTCCEEEEEEEEEEECCCCGGG---
T ss_pred             eEEEeCCCccccCChHHHHHHHhCCCCCEEEEEECcccccCCCCCc----ccCCCCCCEEEEEhhhhhcccCcchhh---
Confidence            89999976   48999999999999999999999999999998875    236899999999999998854221110   


Q ss_pred             eeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEEEEcC
Q 008689          272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAP  350 (557)
Q Consensus       272 ~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v~i~~  350 (557)
                         +.+.     ..|...       ..+..-|..             -+..|+. .-+..++.++...           +
T Consensus       259 ---~~~~-----~~~~~a-------~~~~~~G~~-------------~~~~g~~~~A~~~y~~Al~~~-----------p  299 (457)
T 1kt0_A          259 ---MDTK-----EKLEQA-------AIVKEKGTV-------------YFKGGKYMQAVIQYGKIVSWL-----------E  299 (457)
T ss_dssp             ---SCHH-----HHHHHH-------HHHHHHHHH-------------HHHTTCHHHHHHHHHHHHHHH-----------T
T ss_pred             ---cCHH-----HHHHHH-------HHHHHHHHH-------------HHhCCCHHHHHHHHHHHHHHh-----------c
Confidence               0000     000000       000000000             0111221 1233344444211           0


Q ss_pred             CCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689          351 EYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (557)
Q Consensus       351 ~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~  430 (557)
                      .                 ...         +..     ....+.....+..+.++|..+++.++|++|+..|++|+.+.+
T Consensus       300 ~-----------------~~~---------~~~-----~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  348 (457)
T 1kt0_A          300 M-----------------EYG---------LSE-----KESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDS  348 (457)
T ss_dssp             T-----------------CCS---------CCH-----HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             c-----------------ccc---------CCh-----HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Confidence            0                 000         000     001122334578889999999999999999999999999877


Q ss_pred             hcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHH
Q 008689          431 YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD  504 (557)
Q Consensus       431 ~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~  504 (557)
                      .+.               .+|+++|.||+++++|++|+.++++|++++|++..+++.++.++..++++++|.+.
T Consensus       349 ~~~---------------~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~  407 (457)
T 1kt0_A          349 ANE---------------KGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRR  407 (457)
T ss_dssp             TCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            532               34899999999999999999999999999999999999999999999999988754

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=3.3e-40  Score=322.11  Aligned_cols=223  Identities=44%  Similarity=0.762  Sum_probs=205.5

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      +++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            58899999999999955599999999999999999999999987678999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccc--cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSVKDIC--KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (557)
                      |++|||..+.++.||++++++|+|+|+++... ++.  .+.++.++++++|+|...++.||.|+++|++++ +|++|++ 
T Consensus       129 p~~aYG~~g~~~~Ip~~~~lvf~Vel~~i~~~-~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~~fd~-  205 (280)
T 1q1c_A          129 PEYAYGSAGSPPKIPPNATLVFEVELFEFKGE-DLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQ-  205 (280)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEECE-ECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTEEEEE-
T ss_pred             cHHhCCCcCccCCCCCCCcEEEEEEeeeeccc-ccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCEEEec-
Confidence            99999999988899999999999999999864 444  788899999999999878999999999999998 8888887 


Q ss_pred             cceEEEecCCC---CCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccccee
Q 008689          193 DGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVS  264 (557)
Q Consensus       193 ~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~  264 (557)
                      .++.|.+|.++   +++||+++|.+|+.||+++|.|||+++||+.+.+    ...|||+++|+|+|+|+++..+.
T Consensus       206 ~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~----~~~IP~~~~l~f~V~L~~i~~~~  276 (280)
T 1q1c_A          206 RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAK  276 (280)
T ss_dssp             EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBG----GGTBCTTCCEEEEEEEEEEECCC
T ss_pred             CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCc----cCccCCCCeEEEEEEEEEEeCCC
Confidence            69999999998   5999999999999999999999999999998764    12599999999999999997654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=100.00  E-value=2.4e-37  Score=314.18  Aligned_cols=276  Identities=39%  Similarity=0.711  Sum_probs=257.1

Q ss_pred             eeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccc---hhhHHHHHHhccC
Q 008689          263 VSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMK  339 (557)
Q Consensus       263 ~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~  339 (557)
                      ..+++.|++++|+|+++|.|..+|..|+.|+|||.+++ +|++|+++       |++|.+|.+.   ++++|+.+|..|+
T Consensus        18 ~~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-------~~~f~lG~g~~~~~~~~~e~al~~~~   89 (336)
T 1p5q_A           18 GSHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-------ELRFEIGEGENLDLPYGLERAIQRME   89 (336)
T ss_dssp             ----CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCC
T ss_pred             ceeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-------CeEEEeCCCCccccchHHHHHHhcCC
Confidence            35667899999999999999878999999999999998 89999864       6899999987   4899999999999


Q ss_pred             cCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHH
Q 008689          340 KNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS  419 (557)
Q Consensus       340 ~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~  419 (557)
                      +||++.+.++|.++||..+...  ..+|+++.+.|+++|.++.+....+.+..+..+..+..+...|+.+++.|+|++|+
T Consensus        90 ~Ge~~~l~i~p~~ayg~~g~~~--~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~  167 (336)
T 1p5q_A           90 KGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQAL  167 (336)
T ss_dssp             TTCEEEEEECTTTTTTTTCBGG--GTBCSSCCEEEEEEEEEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCeEEEEECCccccCcCCCCc--cCCCCCCeEEEEEEEeecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999988753  25899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHH
Q 008689          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD  499 (557)
Q Consensus       420 ~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~  499 (557)
                      ..|++|+.+.+.......++..+...+...+++|+|.||+++++|++|+.+|+++|+++|++.++|+++|.+|..+|+|+
T Consensus       168 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~  247 (336)
T 1p5q_A          168 LQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFE  247 (336)
T ss_dssp             HHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHH
Confidence            99999999999887777777888888999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       500 ~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      +|+.+|++|++++|++..+...+..+..++.+.++++++.|++||.++.
T Consensus       248 ~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~  296 (336)
T 1p5q_A          248 LARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA  296 (336)
T ss_dssp             HHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999998874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=100.00  E-value=5e-38  Score=319.41  Aligned_cols=277  Identities=34%  Similarity=0.530  Sum_probs=212.3

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecC-CcEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEE
Q 008689          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQD-GTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (557)
Q Consensus       269 d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~-g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v  346 (557)
                      +.++.++|+++|.|. .|..|+.|+|||.+++.+ |++|+++..  .+.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus        48 ~~~~~~~~~~~g~g~-~~~~gd~v~v~y~g~~~~~g~~fd~~~~--~~~~~~~~lg~~~~~i~g~e~~l~~m~~Ge~~~~  124 (338)
T 2if4_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (338)
T ss_dssp             ETTEEEEEEECCBSC-CCCTTCEEEEEEEEEETTTCCCCEEHHH--HTCCEEEETTSCCGGGHHHHHHHHHCCBTCEEEE
T ss_pred             CCCeEEEEEeCCCCC-CCCCCCEEEEEEEEEEcCCCcEeecccC--CCCCeEEEcCCCCcccHHHHHHHhcCCCCCeEEE
Confidence            567999999999995 899999999999999985 999998642  467999999999 899999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCceEEEEEEEeeeeec---ccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHH
Q 008689          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE---KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYE  423 (557)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~---~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~  423 (557)
                      +|++.++||..+... ...||+++++.|.|+|..+...   ...|.++.++++..+..++..|+.+++.++|.+|+.+|.
T Consensus       125 ~i~~~~~yg~~~~~~-~~~ip~~~~l~f~v~L~~~~~~~e~~~~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~  203 (338)
T 2if4_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAADRRKMDGNSLFKEEKLEEAMQQYE  203 (338)
T ss_dssp             EECGGGSSCSSCCCS-SSCCCTTCCEEEEEEEEEEECCCCCBTTTBCCHHHHHHHHHHHHHHHHHTCSSSCCHHHHHHHH
T ss_pred             EECHHHhcCCCCCCC-CCCCCCCCcEEEEEEEEEecCCccccccccCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            999999999988632 2468999999999999998764   347889999999999999999999999999999999999


Q ss_pred             HHHHHhhhcC--CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHH
Q 008689          424 KAVKYIEYDT--SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA  501 (557)
Q Consensus       424 ~Al~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A  501 (557)
                      +|+.+.+.+.  ............+...+|+|+|.||+++++|++|+.+|+++|+++|++.++||++|.+|..+|+|++|
T Consensus       204 ~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A  283 (338)
T 2if4_A          204 MAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSA  283 (338)
T ss_dssp             HHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            9999877643  12223334455566678999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC
Q 008689          502 EFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNT  549 (557)
Q Consensus       502 ~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~  549 (557)
                      +.+|++|++++|++..++..+..+..+.....+++++.|++||.....
T Consensus       284 ~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~  331 (338)
T 2if4_A          284 RDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDE  331 (338)
T ss_dssp             HHHHHHTTC---------------------------------------
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            999999999999999999999999888888888888999999987543

>3jxv_A 70 kDa peptidyl-prolyl isomerase; FKBP- binding domain five-stranded anti-parallel beta-sheet alpha-helix crossing THis sheet; 2.08A {Triticum aestivum} PDB: 3jym_A

Probab=100.00  E-value=3.6e-37  Score=313.05  Aligned_cols=220  Identities=39%  Similarity=0.688  Sum_probs=206.2

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      .+.++.++++++|.|+.+|..||.|.|||++++.||++|+++    .++.|.+|.+.+++||+.||.+|++||+++|+||
T Consensus       125 ~D~~~~k~i~~~G~g~~~p~~g~~V~v~y~g~l~dgt~~~~~----~~~~f~~g~~~v~~gl~~~l~~m~~GE~~~~~v~  200 (356)
T 3jxv_A          125 KDGGIFKKILKEGDKWENPKDPDEVFVKYEARLEDGTVVSKS----EGVEFTVKDGHLCPALAKAVKTMKKGEKVLLAVK  200 (356)
T ss_dssp             SSSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEE----EEEEEEGGGCSSSHHHHHHHTTCCBTCEEEEEEC
T ss_pred             cCceeEEEEEecCcccCCCCCCCEEEEEEEEEECCCCEEecc----CCEEEEeCCCCcchHHHHHHhhCCCCCEEEEEEC
Confidence            568999999999999999999999999999999999999988    4799999999999999999999999999999999


Q ss_pred             CCcccCCCCCCC-----CCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEe
Q 008689          115 PELAYGESGSPP-----TIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV  189 (557)
Q Consensus       115 ~~~ayg~~~~~~-----~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~  189 (557)
                      |+++||+.|.+.     .||++++|.|+|+|++|..+.++..+.++.++++++|.|+..++.||.|++||++++.+|++|
T Consensus       201 p~~~yg~~G~~~~~~~~~ip~~~~l~~~vel~~~~~v~dv~~d~~~~~~i~~~g~g~~~~~~gd~V~v~y~g~l~dG~~f  280 (356)
T 3jxv_A          201 PQYGFGEMGRPAAGEGGAVPPNASLVIDLELVSWKTVTEIGDDKKILKKVLKEXEGYERPNEGAVVTVKITGKLQDGTVF  280 (356)
T ss_dssp             GGGTTTTTCBCCCC--CCBCTTCCEEEEEEEEEEECEEEESTTCCEEEEEEECCBSSCCCCTTCEEEEEEEEEESSSCEE
T ss_pred             hHhhcCCCCCCcccccccCCCCcEEEEEEEEEEEecccccccccceeEEeeecccccCCCCCCCEEEEEEEEEECCCCEE
Confidence            999999998764     599999999999999999989999999999999999999999999999999999999999999


Q ss_pred             eec-----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          190 GKA-----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       190 ~~~-----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      +++     +|+.|.+|.+++|+||+++|.+|+.||+++|.|||++|||+.+...   ...|||+++|+|+|+|++|.
T Consensus       281 d~~~~~~~~p~~f~~G~g~~i~G~e~~l~gm~~Ge~~~v~ip~~~aYG~~~~~~---~~~Ip~~~~l~f~vel~~~~  354 (356)
T 3jxv_A          281 LKKGHDEQEPFEFKTDEEAVIEGLDRAVLNMKKGEVALVTIPPEYAYGSTESKQ---DAIVPPNSTVIYEVELVSFV  354 (356)
T ss_dssp             EEESCTTSCCCEEETTTTSSCHHHHHHHTTCCBTCEEEEEECGGGTTTTSCEES---SSEECTTCCEEEEEEEEEEE
T ss_pred             eeccccCCcCEEEEECCCccchHHHHHHhCCCCCCEEEEEEChHHccCCCCcCC---CCcCCcCCeEEEEEEEEEEE
Confidence            865     6899999999999999999999999999999999999999886421   14699999999999999985

>1q1c_A FK506-binding protein 4; rotamase, TPR repeat, nuclear protein, phosphorylation, isomerase; 1.90A {Homo sapiens} SCOP: d.26.1.1 d.26.1.1 PDB: 1n1a_A 1rot_A 1rou_A

Probab=100.00  E-value=1.9e-36  Score=295.56  Aligned_cols=223  Identities=37%  Similarity=0.671  Sum_probs=203.1

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (557)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp  226 (557)
                      .++++.++++++|.|...+..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        49 ~~~gl~~~vl~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~ip  128 (280)
T 1q1c_A           49 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK  128 (280)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCceEEEEEeCCCCCcCCCCCCEEEEEEEEEECCCCEEEecccCCCCEEEEECCcChhHHHHHHHhcCCCCCEEEEEEC
Confidence            678999999999999777999999999999999999999986    6899999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee--CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCc
Q 008689          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGT  304 (557)
Q Consensus       227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~  304 (557)
                      |++|||+.|.+     +.|||+++|+|+|+|++|.. .++.  .|+++.++++++|.|...|..|+.|+|||.+++ +|+
T Consensus       129 p~~aYG~~g~~-----~~Ip~~~~lvf~Vel~~i~~-~~~~~~~d~gl~~~il~~G~G~~~~~~gd~V~i~y~g~~-dG~  201 (280)
T 1q1c_A          129 PEYAYGSAGSP-----PKIPPNATLVFEVELFEFKG-EDLTEEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDK  201 (280)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC-EECCTTCSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEE-TTE
T ss_pred             cHHhCCCcCcc-----CCCCCCCcEEEEEEeeeecc-cccccccccceeEEeeecccccccccCCceEEEEEEEEe-CCE
Confidence            99999998875     57999999999999999976 4666  789999999999999878999999999999998 899


Q ss_pred             EEEecCCCCCcccEEEEcCccc---hhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeee
Q 008689          305 VFVKKGHSEEEQLFEFKTDEEQ---VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (557)
Q Consensus       305 ~~~~~~~~~~~~~~~~~lg~~~---vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~  381 (557)
                      +|++       .+++|.+|.+.   +|+||+.+|..|++||++.|+++++|+||..+...  ..||+++++.|+|+|.++
T Consensus       202 ~fd~-------~~~~f~lG~g~~~~~i~G~e~~l~gmk~Ge~~~v~ip~~~~yG~~~~~~--~~IP~~~~l~f~V~L~~i  272 (280)
T 1q1c_A          202 LFDQ-------RELRFEIGEGENLDLPYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSF  272 (280)
T ss_dssp             EEEE-------EEEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEE
T ss_pred             EEec-------CCeEEEecCCcccccchhHHHHHhCCCCCcEEEEEEChhHcCCcCCCcc--CccCCCCeEEEEEEEEEE
Confidence            9975       36999999998   49999999999999999999999999999987543  259999999999999999


Q ss_pred             eecccccC
Q 008689          382 EKEKESWD  389 (557)
Q Consensus       382 ~~~~~~~~  389 (557)
                      ....+.|+
T Consensus       273 ~~~~~~W~  280 (280)
T 1q1c_A          273 EKAKESWE  280 (280)
T ss_dssp             ECCCC---
T ss_pred             eCCCCCCC
Confidence            98888874

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.93  E-value=2.7e-26  Score=232.89  Aligned_cols=298  Identities=19%  Similarity=0.256  Sum_probs=175.8

Q ss_pred             CCCCCcCccCcceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcC-CCEEeecCCCCCceEEEccCC-cccHHH
Q 008689           19 LPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLD-GTQFDSSRDRSTPFKFTLGQG-NVIKGW   96 (557)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~d-g~~~~~t~~~~~p~~~~lg~~-~~~~gl   96 (557)
                      ..+++.++++.....+.++|+.|+++++|+| ..|..||.|.|||++++.+ |++|++++.++.|+.|.+|.+ ++|+||
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g-~~~~~gd~v~v~y~g~~~~~g~~fd~~~~~~~~~~~~lg~~~~~i~g~  109 (338)
T 2if4_A           31 SQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAGL  109 (338)
T ss_dssp             ----CCCCCCCSCCEEEETTEEEEEEECCBS-CCCCTTCEEEEEEEEEETTTCCCCEEHHHHTCCEEEETTSCCGGGHHH
T ss_pred             CcccCCCCCCCcCceeCCCCeEEEEEeCCCC-CCCCCCCEEEEEEEEEEcCCCcEeecccCCCCCeEEEcCCCCcccHHH
Confidence            3445555677777788999999999999999 7999999999999999984 999999976678999999999 899999


Q ss_pred             HHHHcccccccEEEEEecCCcccCCCCC--CCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCe
Q 008689           97 DIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDE  174 (557)
Q Consensus        97 ~~~l~gm~~Ge~~~v~ip~~~ayg~~~~--~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~  174 (557)
                      +++|.||++|++++|+|||+++||..+.  .+.||++++++|.|+|+++....+..             .          
T Consensus       110 e~~l~~m~~Ge~~~~~i~~~~~yg~~~~~~~~~ip~~~~l~f~v~L~~~~~~~e~~-------------~----------  166 (338)
T 2if4_A          110 AIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKEGK-------------A----------  166 (338)
T ss_dssp             HHHHHHCCBTCEEEEEECGGGSSCSSCCCSSSCCCTTCCEEEEEEEEEEECCCCCB-------------T----------
T ss_pred             HHHHhcCCCCCeEEEEECHHHhcCCCCCCCCCCCCCCCcEEEEEEEEEecCCcccc-------------c----------
Confidence            9999999999999999999999999886  35788999999999888775421100             0          


Q ss_pred             EEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEE
Q 008689          175 VLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIA  254 (557)
Q Consensus       175 V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~  254 (557)
                                                  .+-..+++-+.                                         
T Consensus       167 ----------------------------~~~~~~~~~~~-----------------------------------------  177 (338)
T 2if4_A          167 ----------------------------RSDMTVEERIG-----------------------------------------  177 (338)
T ss_dssp             ----------------------------TTBCCHHHHHH-----------------------------------------
T ss_pred             ----------------------------cccCCHHHHHH-----------------------------------------
Confidence                                        00000000000                                         


Q ss_pred             EEeecccceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCcc-chhhHHHH
Q 008689          255 LELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDR  333 (557)
Q Consensus       255 v~l~~~~~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~  333 (557)
                             .          ......                       -|...             +..|+. .-+..++.
T Consensus       178 -------~----------a~~~~~-----------------------~g~~~-------------~~~g~~~~A~~~y~~  204 (338)
T 2if4_A          178 -------A----------ADRRKM-----------------------DGNSL-------------FKEEKLEEAMQQYEM  204 (338)
T ss_dssp             -------H----------HHHHHH-----------------------HHHHT-------------CSSSCCHHHHHHHHH
T ss_pred             -------H----------HHHHHH-----------------------HHHHH-------------HhcCCHHHHHHHHHH
Confidence                   0          000000                       00000             001111 12334555


Q ss_pred             HHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcC
Q 008689          334 AVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAG  413 (557)
Q Consensus       334 ~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~  413 (557)
                      ++.......          .|...+..                              ...........+.+.|..+++.+
T Consensus       205 Al~~~p~~~----------~~~~~~~~------------------------------~~~~~~l~~~~~~nla~~~~~~g  244 (338)
T 2if4_A          205 AIAYMGDDF----------MFQLYGKY------------------------------QDMALAVKNPCHLNIAACLIKLK  244 (338)
T ss_dssp             HHHHSCHHH----------HHTCCHHH------------------------------HHHHHHHHTHHHHHHHHHHHTTT
T ss_pred             HHHHhccch----------hhhhcccH------------------------------HHHHHHHHHHHHHHHHHHHHHcC
Confidence            553221100          00000000                              00001112246789999999999


Q ss_pred             cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH-H
Q 008689          414 KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA-Y  492 (557)
Q Consensus       414 ~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a-~  492 (557)
                      +|++|+..|++|+.+.+.+.               .+++|+|.+|+.+++|++|+.+++++++++|++..++..++.+ .
T Consensus       245 ~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~  309 (338)
T 2if4_A          245 RYDEAIGHCNIVLTEEEKNP---------------KALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAE  309 (338)
T ss_dssp             CCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------
T ss_pred             CHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            99999999999999876432               3489999999999999999999999999999999999999998 4


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          493 IQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       493 ~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      ...+.+++|.+.|++++...|++..
T Consensus       310 ~~~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          310 QEKALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -------------------------
T ss_pred             HHHHHHHHHHHHHHHhhCCCCCCCC
Confidence            4567788999999999999998854

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.91  E-value=6.4e-24  Score=178.88  Aligned_cols=110  Identities=51%  Similarity=0.887  Sum_probs=104.1

Q ss_pred             ecCCCeEEEEEEcccCcCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           34 IGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        34 ~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      +.++|++|+++++|+| .. ++.||.|.+||++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|++++|+
T Consensus         3 ~~~~g~~~~~~~~G~g-~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~   81 (113)
T 1yat_A            3 VIEGNVKIDRISPGDG-ATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT   81 (113)
T ss_dssp             ECGGGCEEEEEECCCS-SCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred             CCCCCeEEEEEECCCC-cccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence            4789999999999999 55 999999999999999999999999876689999999999999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |||++|||+.+.++.||++++++|+|+|++++
T Consensus        82 ip~~~ayG~~~~~~~Ip~~~~l~f~vel~~ik  113 (113)
T 1yat_A           82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCCCCcCCCCeEEEEEEEEEeC
Confidence            99999999999888899999999999999873

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.91  E-value=7.5e-24  Score=185.79  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.9

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      .++|++|+++++|+|...|..||.|.|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus        33 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip  112 (144)
T 3o5e_A           33 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK  112 (144)
T ss_dssp             CSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESGGGTSCEEEETTSSSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeecccCCCeEEEeCCCcccHHHHHHHhCCCCCCEEEEEEC
Confidence            68999999999999955899999999999999999999999987778999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (557)
                      |++|||..+.++.|||+++|+|+|+|++|+.
T Consensus       113 p~~aYG~~g~~~~Ipp~~~L~f~VeL~~ikg  143 (144)
T 3o5e_A          113 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  143 (144)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHCcCCCCCCCCcCCCCeEEEEEEEEEecC
Confidence            9999999999889999999999999999863

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.91  E-value=9.6e-24  Score=179.63  Aligned_cols=109  Identities=46%  Similarity=0.832  Sum_probs=102.1

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCC-------CCceEEEccCCcccHHHHHHHccccccc
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDR-------STPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~-------~~p~~~~lg~~~~~~gl~~~l~gm~~Ge  107 (557)
                      .|+|++|+++++|+|...|+.||.|.|||++++.||++|++++..       +.|+.|.+|.+++++||+++|.+|++|+
T Consensus         2 ~p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   81 (119)
T 3kz7_A            2 GPPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGE   81 (119)
T ss_dssp             CSCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             CCCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCC
Confidence            579999999999999657999999999999999999999999752       4799999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCC-CCCCCCcEEEEEEEEEe
Q 008689          108 NAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW  143 (557)
Q Consensus       108 ~~~v~ip~~~ayg~~~~~~-~ip~~~~l~~~v~l~~~  143 (557)
                      +++|+|||++|||+.+.++ .||++++++|+|+|+++
T Consensus        82 ~~~v~ip~~~aYG~~g~~~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           82 KARLEIEPEWAYGKKGQPDAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEEECGGGTTCTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEEECcHHhcCCCCCCCCccCcCCeEEEEEEEEEe
Confidence            9999999999999999865 79999999999999986

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.91  E-value=6.2e-24  Score=182.75  Aligned_cols=111  Identities=52%  Similarity=0.906  Sum_probs=105.4

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      .++|++|+++++|+|...|+.||.|.|||++++.||++|++++.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~ip   96 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHDRNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLLCK   96 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            78999999999999955799999999999999999999999987668999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (557)
                      |++|||+.+.++.||++++++|+|+|++++.
T Consensus        97 ~~~aYG~~g~~~~Ip~~~~l~f~vel~~i~~  127 (128)
T 3o5q_A           97 PEYAYGSAGSLPKIPSNATLFFEIELLDFKG  127 (128)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             hHHcCCCCCCCCCcCCCCEEEEEEEEEEecC
Confidence            9999999999889999999999999999863

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.91  E-value=8.4e-24  Score=183.49  Aligned_cols=112  Identities=55%  Similarity=0.988  Sum_probs=105.3

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      +++|++|+++++|+|...|+.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||++||.+|++|++++|+||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            67999999999999955799999999999999999999999976558999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEeeec
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~  146 (557)
                      |++|||+.+.++.||++++++|+|+|+++...
T Consensus        92 ~~~aYG~~g~~~~Ip~~~~l~f~v~l~~i~~~  123 (135)
T 1r9h_A           92 SDYGYGDAGSPPKIPGGATLIFEVELFEWSAE  123 (135)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC-
T ss_pred             hHHcCCCCCCCCCcCcCCcEEEEEEEEEeecC
Confidence            99999999988899999999999999999864

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.90  E-value=2e-23  Score=180.16  Aligned_cols=110  Identities=53%  Similarity=0.881  Sum_probs=104.8

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ...++|++|+++++|+| ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|+
T Consensus        24 ~~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~  102 (133)
T 2y78_A           24 VTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLT  102 (133)
T ss_dssp             EECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEE
T ss_pred             EECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEE
Confidence            45889999999999999 89999999999999999999999999876789999999999999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      |||++|||+.+.++.||||++++|+|+|+++
T Consensus       103 ip~~~aYG~~~~~~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          103 IPPQLGYGARGAGGVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             ECcHHhCCCCCCCCCCCCCCeEEEEEEEEEC
Confidence            9999999999988889999999999999874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.90  E-value=3e-24  Score=186.09  Aligned_cols=125  Identities=35%  Similarity=0.630  Sum_probs=105.2

Q ss_pred             CCCCCcCccCcceee--ecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceEEEccCCcccHH
Q 008689           19 LPDDAPMMKVGEEKE--IGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKG   95 (557)
Q Consensus        19 ~~~~~~~~~~~~~~~--~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~~~lg~~~~~~g   95 (557)
                      .+..+|+..+..+..  ++++|++|+++++|+| ..+..||.|.|||++++. +|++|++++.+++|+.|.+|.+++++|
T Consensus         6 ~~~~~~~~~~~~~~~~v~~~~gl~~~vl~~G~g-~~~~~gd~V~v~Y~g~l~~~G~~fdss~~~~~p~~f~lG~g~~i~G   84 (134)
T 3b7x_A            6 APGQSLYERLSQRMLDISGDRGVLKDVIREGAG-DLVAPDASVLVKYSGYLEHMDRPFDSNYFRKTPRLMKLGEDITLWG   84 (134)
T ss_dssp             ---CCHHHHHTTTCEESSSSSSEEEEEEECCEE-EECCTTCEEEEEEEEECTTCSSCSEEC-------CEEC-CCCCCHH
T ss_pred             CCCCChhHHhccccceeeCCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCeEEEecCCCCCCEEEEcCCcchhHH
Confidence            345677777666553  4899999999999999 788899999999999988 699999998766899999999999999


Q ss_pred             HHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689           96 WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus        96 l~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |+++|.+|++|++++|+|||++|||+.+.++.||++++++|+|+|+++.
T Consensus        85 ~e~aL~gm~~Ge~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           85 MELGLLSMRRGELARFLFKPNYAYGTLGCPPLIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             HHHHHHTCEETCEEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             HHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCcCCeEEEEEEEEEEe
Confidence            9999999999999999999999999999888899999999999999874

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.90  E-value=3.4e-23  Score=188.15  Aligned_cols=130  Identities=29%  Similarity=0.552  Sum_probs=115.0

Q ss_pred             CCCCCCcCccCcceeeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceEEEccCC-cccHH
Q 008689           18 DLPDDAPMMKVGEEKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQG-NVIKG   95 (557)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~~~lg~~-~~~~g   95 (557)
                      -+++.+++++.......+++|++|+++++|+| ..|..||.|.|||++++. +|++|++++.++.|+.|.+|.+ ++++|
T Consensus        30 ~~~~~~~p~~~~~~~~~~~~gl~~~vl~~G~G-~~~~~Gd~V~v~Y~g~l~~dG~~fdss~~~~~p~~f~lG~g~~vi~G  108 (180)
T 2f4e_A           30 PSQEGNVPPKVDSEAEVLDEKVSKQIIKEGHG-SKPSKYSTCFLHYRAWTKNSQHKFEDTWHEQQPIELVLGKEKKELAG  108 (180)
T ss_dssp             ----CCSCCCCCSCCEEEETTEEEEEEECCBS-CCBCTTCEEEEEEEEEETTTCCEEEETTTTTCCEEEETTSCCGGGHH
T ss_pred             CCCcccCCcccCCCcEECCCceEEEEEeCCCC-CCCCCCCEEEEEEEEEECCCCcEEeccCccCCCEEEEeCCCCchhHH
Confidence            44455666667777778999999999999999 799999999999999998 6999999988778999999999 99999


Q ss_pred             HHHHHcccccccEEEEEecCCcccCCCCC--CCCCCCCCcEEEEEEEEEeeeccc
Q 008689           96 WDIGIKTMKKGENAVFTIPPELAYGESGS--PPTIPPNATLQFDVELLSWTSVKD  148 (557)
Q Consensus        96 l~~~l~gm~~Ge~~~v~ip~~~ayg~~~~--~~~ip~~~~l~~~v~l~~~~~~~d  148 (557)
                      |+++|.+|++|++++|+|||++|||..+.  ++.||++++++|+|+|+++..+..
T Consensus       109 ~eeaL~gMk~Ge~~~v~iPp~~aYG~~g~~~~~~Ip~~s~l~F~VeL~~v~~~~e  163 (180)
T 2f4e_A          109 LAIGVASMKSGERALVHVGWELAYGKEGNFSFPNVPPMADLLYEVEVIGFDETKE  163 (180)
T ss_dssp             HHHHHTTCCBTCEEEEEECGGGTTTTTCBSSSSCBCTTCCEEEEEEEEEESCBCC
T ss_pred             HHHHHhCCCCCCEEEEEECchHhCCcCCcccCCCcCCCCeEEEEEEEEEEecCcc
Confidence            99999999999999999999999999986  467999999999999999986543

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.90  E-value=2e-23  Score=174.11  Aligned_cols=106  Identities=51%  Similarity=0.943  Sum_probs=99.9

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCc
Q 008689           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (557)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~  117 (557)
                      |++|+++++|+|...++.||.|.+||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|+|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            78999999999943499999999999999999999999976557999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          118 AYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      |||+.+.++.||++++++|+|+|+++
T Consensus        81 ayG~~~~~~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHPGIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCCCCcCCCCeEEEEEEEEEe
Confidence            99999988889999999999999886

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.90  E-value=2.4e-23  Score=179.13  Aligned_cols=110  Identities=56%  Similarity=0.992  Sum_probs=103.5

Q ss_pred             eecCCCeEEE--EEEcccCcCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689           33 EIGNQGLKKK--LVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (557)
Q Consensus        33 ~~~~~g~~~~--~~~~G~G~~~-~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~  109 (557)
                      ..+++|++|+  ++++|+| .. |+.||.|.|+|++++.||++|++++..++|+.|.+|.+++++||+++|.+|++|+++
T Consensus        18 ~~~~~Gl~~~K~~l~~G~G-~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~   96 (130)
T 2lgo_A           18 GPGSMSAQLEKKVLTPGDG-VTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKA   96 (130)
T ss_dssp             SSSSSSCCCCEEEEECCCS-SCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEE
T ss_pred             eeCCCceEEEEEEEeccCC-CccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEE
Confidence            3478999999  9999999 55 999999999999999899999999886689999999999999999999999999999


Q ss_pred             EEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          110 VFTIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       110 ~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      +|.|||++|||+.+.++.||++++++|+|+|+++
T Consensus        97 ~v~ip~~~aYG~~~~~~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A           97 LFTIPYQLAYGERGYPPVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             EEEECTTTSTTTTCCSTTSCSSCCEEEEEEEEEC
T ss_pred             EEEECcHHHCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            9999999999999988889999999999999874

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.89  E-value=1e-22  Score=174.71  Aligned_cols=111  Identities=38%  Similarity=0.668  Sum_probs=103.8

Q ss_pred             eecCCCeEEEEEEccc--CcCCCCCCCEEEEEEEEEEc-CCCEEeecCC--CCCceEEEccCCcccHHHHHHHccccccc
Q 008689           33 EIGNQGLKKKLVKEGE--GWDTPENGDEVEVHYTGTLL-DGTQFDSSRD--RSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~--G~~~~~~gd~V~v~y~~~~~-dg~~~~~t~~--~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge  107 (557)
                      .++++|++|+++++|+  | ..++.||.|.|||++++. ||++|++++.  .+.|+.|.+|.+++++||+++|.+|++|+
T Consensus         8 ~~~~~gl~~~~l~~g~~~g-~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            8 LIPEPEVKIEVLQKPFICH-RKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GCCCCCCEEEEEECCSCCS-CCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             EECCCCeEEEEEEcCCCCC-CcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            4588999999999999  6 899999999999999998 9999999973  35899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       108 ~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (557)
                      +++|.|||++|||+.+.+ .||+|++++|+|+|+++..
T Consensus        87 ~~~~~ip~~~aYG~~g~~-~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGKG-KIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEEECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHhcCCCCCC-CCCCCCeEEEEEEEEEEEc
Confidence            999999999999999965 8999999999999999864

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.89  E-value=5.6e-23  Score=183.63  Aligned_cols=112  Identities=43%  Similarity=0.696  Sum_probs=104.7

Q ss_pred             eeecCCCeEEEEEEcccCcCC-CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEE
Q 008689           32 KEIGNQGLKKKLVKEGEGWDT-PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (557)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~-~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~  110 (557)
                      ...+++|++|+++++|+| .. |..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||+++|.+|++|++++
T Consensus        32 ~~~~~sGl~~~vl~~G~G-~~~~~~gd~V~v~Y~g~l~dG~~fdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Ge~~~  108 (167)
T 1jvw_A           32 AVKLPSGLVFQRIARGSG-KRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPN--EVIKGWTEALQLMREGDRWR  108 (167)
T ss_dssp             EEECTTSCEEEEEECCCC-SBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGG--GSCHHHHHHHTTCCTTCEEE
T ss_pred             cEECCCCEEEEEEEcCCC-CcCCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEeC--chhHHHHHHHcCCCCCCEEE
Confidence            356899999999999999 66 999999999999999999999999876689999995  89999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeec
Q 008689          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSV  146 (557)
Q Consensus       111 v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~  146 (557)
                      |+|||++|||+.+.++.||||++++|+|+|+++...
T Consensus       109 ~~Ip~~laYG~~g~~~~Ipp~s~LiF~VeL~~i~~~  144 (167)
T 1jvw_A          109 LFIPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDG  144 (167)
T ss_dssp             EEECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGG
T ss_pred             EEECchhhCCCCCCCCCcCCCCeEEEEEEEEEEEcC
Confidence            999999999999988889999999999999999753

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.89  E-value=3.1e-23  Score=183.35  Aligned_cols=114  Identities=25%  Similarity=0.435  Sum_probs=98.0

Q ss_pred             ecCCCeEEEEEEcccCcCCC--CCCCEEEEEEEEEEc--CCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689           34 IGNQGLKKKLVKEGEGWDTP--ENGDEVEVHYTGTLL--DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (557)
Q Consensus        34 ~~~~g~~~~~~~~G~G~~~~--~~gd~V~v~y~~~~~--dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~  109 (557)
                      ++++||+|+++++|+| ..|  ..||.|.|||++++.  ||++||||+.+++|+.|.+|.+++|+||++||.+|++|+++
T Consensus         7 ~~~~Gv~~~vl~~G~G-~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            7 LREDGIQKRVIQEGRG-ELPDFQDGTKATFHYRTLHSDDEGTVLDDSRARGKPMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HHTTSCCCCEEECCSS-CCCCCCTTCEEEEECEEECSSSSCCEEEESTTTTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             ccCCCeEEEEEECCcC-CCCCCCCCCEEEEEEEEEEeCCCccEEEecccCCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence            4789999999999999 543  589999999999986  49999999999999999999999999999999999999999


Q ss_pred             EEEecCCcccCCC--------CCCCC-----------------------------CCCCCcEEEEEEEEEeeeccc
Q 008689          110 VFTIPPELAYGES--------GSPPT-----------------------------IPPNATLQFDVELLSWTSVKD  148 (557)
Q Consensus       110 ~v~ip~~~ayg~~--------~~~~~-----------------------------ip~~~~l~~~v~l~~~~~~~d  148 (557)
                      +|+|||++|||..        ...+.                             ++++++|+|+|||++|..+..
T Consensus        86 ~~~ipp~laYG~p~v~~~~r~~~~~~~p~~~~~~~~g~~~~~~~~~~g~~d~~~li~~p~~L~FeIELl~Ve~P~e  161 (165)
T 2lkn_A           86 QFLCDIKHVVLYPLVAKSLRNIAVGKDPLEGQRHCCGVAQMREHSSLGHADLDALQQNPQPLIFHMEMLKVESPGT  161 (165)
T ss_dssp             EEECCHHHHSSHHHHHHHHTTGGGSSTTTTTCSCCSSCCSCCCCCCCCCSTTTHHHHSCCCCEEEEEEEEEECTTT
T ss_pred             EEEECHHHhcCCcchhhhhhhccccCCCccccccceeeeeccccccccccccccccCCCCCeEEEEEEEEEcCCcc
Confidence            9999999999921        00111                             234478999999999987654

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.88  E-value=1.5e-22  Score=187.52  Aligned_cols=106  Identities=34%  Similarity=0.616  Sum_probs=101.3

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++|   +.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       113 ~~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss---~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~  186 (219)
T 3oe2_A          113 KELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQS---TQPQWFRLD--SVISGWTSALQNMPTGAKWRLV  186 (219)
T ss_dssp             EECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEEC---SSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeecc---CCcEEEEec--chhHHHHHHHhCCCCCCEEEEE
Confidence            45899999999999999 89999999999999999999999999   589999998  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |||++|||+.+.++.||||++++|+|+|++++
T Consensus       187 IPp~lAYG~~g~~~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          187 IPSDQAYGAEGAGDLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             ECchhcCCCCCCCCCCCCCCeEEEEEEEEEEe
Confidence            99999999999888899999999999999985

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.88  E-value=2e-22  Score=187.39  Aligned_cols=111  Identities=52%  Similarity=0.873  Sum_probs=105.6

Q ss_pred             eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEE
Q 008689           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVF  111 (557)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v  111 (557)
                      ...+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|.+++++||++||.+|++|++++|
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            355899999999999999 7899999999999999999999999987778999999999999999999999999999999


Q ss_pred             EecCCcccCCCCCCCCCCCCCcEEEEEEEEEe
Q 008689          112 TIPPELAYGESGSPPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       112 ~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~  143 (557)
                      +|||++|||+.+.++.||+|++++|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAAGVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBTTTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCCCCcCCCCeEEEEEEEEEC
Confidence            99999999999988889999999999999874

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.88  E-value=3.7e-22  Score=172.08  Aligned_cols=112  Identities=46%  Similarity=0.834  Sum_probs=101.2

Q ss_pred             eecCCCeE-EEEEEcc---cCcCCCCCCCEEEEEEEEEE-cCCCEEeecCCCCCceEEEccCCcccHHHHHHHccccccc
Q 008689           33 EIGNQGLK-KKLVKEG---EGWDTPENGDEVEVHYTGTL-LDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGE  107 (557)
Q Consensus        33 ~~~~~g~~-~~~~~~G---~G~~~~~~gd~V~v~y~~~~-~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge  107 (557)
                      .++++|+. ++++++|   +| ..|..||.|.|||++++ .||++|++++.++.|+.|.+|.+++++||+++|.+|++|+
T Consensus        11 ~~~~~g~~~~~il~~G~~g~g-~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~~~~p~~f~lG~g~~i~g~e~~l~gm~~Ge   89 (129)
T 2vn1_A           11 ELTADGGVIKTILKKGDEGEE-NIPKKGNEVTVHYVGKLESTGKVFDSSFDRNVPFKFHLEQGEVIKGWDICVSSMRKNE   89 (129)
T ss_dssp             ECSTTSSEEEEEEECCCCSGG-GSCCTTCEEEEEEEEEETTTCCEEEEGGGTTCCEEEETTSSSSCHHHHHHHTTCCTTC
T ss_pred             EECCCCCEEEEEEeCCCCCCC-CcCCCCCEEEEEEEEEECCCCeEEEecCCCCccEEEEeCCCCcCHHHHHHHhCCCCCC
Confidence            34566654 5789966   45 88999999999999999 7999999998766899999999999999999999999999


Q ss_pred             EEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689          108 NAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       108 ~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (557)
                      +++|+|||++|||+.+.++.||++++++|+|+|+++..
T Consensus        90 ~~~v~ip~~~aYG~~~~~~~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           90 KCLVRIESMYGYGDEGCGESIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             EEEEEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHcCCCCCCCCCcCCCCeEEEEEEEEEEec
Confidence            99999999999999998888999999999999999875

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.88  E-value=2.6e-22  Score=180.56  Aligned_cols=154  Identities=29%  Similarity=0.392  Sum_probs=132.3

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC---CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT---SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (557)
Q Consensus       392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~---~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~  468 (557)
                      .++++..+..+++.|+.+|+.|+|.+|+..|.+|+.+++...   ...++++.........+|+|+|.||+++++|++|+
T Consensus         4 ~~e~~~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~   83 (162)
T 3rkv_A            4 EDDKLKSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAE   83 (162)
T ss_dssp             ----CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            457788999999999999999999999999999999865432   23345566667788899999999999999999999


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      .+|+++|.++|+++++|+++|.+|..+|+|++|+.+|++|++++|+|. .+...+..+..++++.++++++.|++||+
T Consensus        84 ~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~~~~k~~~~~~f~  161 (162)
T 3rkv_A           84 ETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKKADSRVTYSKMFQ  161 (162)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHTTSSCC-------
T ss_pred             HHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999998 88999999999999999999999999996

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.88  E-value=1.1e-22  Score=175.30  Aligned_cols=111  Identities=41%  Similarity=0.706  Sum_probs=103.2

Q ss_pred             eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcc------ccc
Q 008689           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (557)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~g------m~~  105 (557)
                      ...+++|++|+++++|+| ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.|      |++
T Consensus         7 ~~~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~   85 (129)
T 1u79_A            7 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   85 (129)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCC
Confidence            345889999999999999 8899999999999999999999999986558999999999999999999999      999


Q ss_pred             ccEEEEEecCCcccCCCCCC-----CCCCCCCcEEEEEEEEEe
Q 008689          106 GENAVFTIPPELAYGESGSP-----PTIPPNATLQFDVELLSW  143 (557)
Q Consensus       106 Ge~~~v~ip~~~ayg~~~~~-----~~ip~~~~l~~~v~l~~~  143 (557)
                      |++++|.|||++|||+.+.+     +.||+|++++|+|+|+++
T Consensus        86 Ge~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           86 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999998863     479999999999999886

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.88  E-value=4.4e-22  Score=175.71  Aligned_cols=109  Identities=34%  Similarity=0.576  Sum_probs=101.7

Q ss_pred             eecCCCe-EEEEEEcccCcC--CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689           33 EIGNQGL-KKKLVKEGEGWD--TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (557)
Q Consensus        33 ~~~~~g~-~~~~~~~G~G~~--~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~  109 (557)
                      .++++|+ +|+++++|+| .  .|..||.|.|||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|+++
T Consensus        38 ~~~~sG~v~~~vl~~G~G-~~~~p~~gd~V~v~Y~g~l~dG~~fds~----~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~  112 (157)
T 2jwx_A           38 DILGNGLLRKKTLVPGPP-GSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA  112 (157)
T ss_dssp             ESSSSSSEEEEEEECCST-TSCCCCTTEEEEEEEEEECTTSCEEEEE----EEEEEETTTTSSCHHHHHHTTTSCTTCEE
T ss_pred             eECCCCCEEEEEEEccCC-CccCCCCCCEEEEEEEEEECCCCEeecC----CCEEEEeCCCChhHHHHHHHcCCCCCCEE
Confidence            4578886 8999999999 5  8999999999999999999999984    79999999999999999999999999999


Q ss_pred             EEEecCCcccCCCC-CCCCCCCCCcEEEEEEEEEeeec
Q 008689          110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSV  146 (557)
Q Consensus       110 ~v~ip~~~ayg~~~-~~~~ip~~~~l~~~v~l~~~~~~  146 (557)
                      +|+|||++|||+.+ .++.||+|++++|+|+|+++...
T Consensus       113 ~v~IP~~~aYG~~g~~~~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          113 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             EEEECGGGTTTTTCCSSSCCCTTCCEEEEEEEEEEEEC
T ss_pred             EEEECchhcCCcccccCCCcCCCCeEEEEEEEEEEEcc
Confidence            99999999999999 67789999999999999998764

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.88  E-value=5.3e-22  Score=168.29  Aligned_cols=108  Identities=34%  Similarity=0.563  Sum_probs=100.1

Q ss_pred             eecCCC-eEEEEEEcccCc-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEE
Q 008689           33 EIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (557)
Q Consensus        33 ~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~  110 (557)
                      .++++| ++|+++++|+|. ..|+.||.|.|||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|++++
T Consensus         8 ~~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~----~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~   83 (118)
T 2awg_A            8 DILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETAM   83 (118)
T ss_dssp             ESSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEE----EEEEEETTSSCSCHHHHHHGGGSCTTCEEE
T ss_pred             EECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECC----CCEEEEECCCChhHHHHHHHhCCCCCCEEE
Confidence            446667 999999999993 27999999999999999899999984    799999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          111 FTIPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       111 v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |+|||++|||+.+.++.||++++++|+|+|++++
T Consensus        84 ~~ip~~~ayG~~~~~~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           84 VTADSKYCYGPQGRSPYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             EEECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             EEEChHHccCCCCCCCccCCCCeEEEEEEEEEec
Confidence            9999999999999888899999999999999875

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.88  E-value=3.1e-22  Score=185.70  Aligned_cols=110  Identities=36%  Similarity=0.634  Sum_probs=104.0

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       102 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  178 (213)
T 1fd9_A          102 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  178 (213)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEcC--chhhHHHHHHcCCCCCCEEEEE
Confidence            45899999999999999 89999999999999999999999999876689999995  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (557)
                      |||++|||+.+.++.|||+++++|+|+|+++..
T Consensus       179 IP~~laYG~~g~~~~Ipp~stLiF~VeLl~v~~  211 (213)
T 1fd9_A          179 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  211 (213)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             ECchhccCccCCCCCCCCCCeEEEEEEEEEEEc
Confidence            999999999998788999999999999999863

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.87  E-value=4.7e-22  Score=201.41  Aligned_cols=271  Identities=22%  Similarity=0.293  Sum_probs=196.6

Q ss_pred             cccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCC---CCchHHHHHhhccCCcEEEE
Q 008689          147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGH---FCPTLAKAVKTMKKGEKVLL  223 (557)
Q Consensus       147 ~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~---~~~gl~~~l~~m~~Ge~~~i  223 (557)
                      .++..++++.++++.+|.|...|..|+.|+|+|++++ +|++|+++ |+.|.+|.|.   ++++|+++|.+|+.|+++.+
T Consensus        19 ~~~~~~~~~~~~~~~~g~g~~~p~~~~~v~v~y~g~~-~g~~fd~~-~~~f~lG~g~~~~~~~~~e~al~~~~~Ge~~~l   96 (336)
T 1p5q_A           19 SHMEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYY-KDKLFDQR-ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   96 (336)
T ss_dssp             ---CCTTSEEEEEEECCCCSCCCCTTCEEEEEEEEEE-TTEEEEEE-EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             eeecCCCcEEEEEEeCCCCCCCCCCCCeEEEEEEEEE-CCEEEecC-CeEEEeCCCCccccchHHHHHHhcCCCCCeEEE
Confidence            4566789999999999999778999999999999999 88888877 8999999886   58999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCC
Q 008689          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDG  303 (557)
Q Consensus       224 ~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g  303 (557)
                      .+||+++||..|.+.    ..||+++++.|++.|.++..-....      .+.+.     ..|...   ..    +..-|
T Consensus        97 ~i~p~~ayg~~g~~~----~~i~~~~~l~f~~~L~~~~~A~~~~------~~a~~-----~~p~~a---~~----~~~~g  154 (336)
T 1p5q_A           97 YLKPSYAFGSVGKEK----FQIPPNAELKYELHLKSFEKAKESW------EMNSE-----EKLEQS---TI----VKERG  154 (336)
T ss_dssp             EECTTTTTTTTCBGG----GTBCSSCCEEEEEEEEEEECCCCGG------GCCHH-----HHHHHH---HH----HHHHH
T ss_pred             EECCccccCcCCCCc----cCCCCCCeEEEEEEEeecccccchh------cCCHH-----HHHHHH---HH----HHHHH
Confidence            999999999988751    2589999999999999985422111      00000     000000   00    00000


Q ss_pred             cEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689          304 TVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (557)
Q Consensus       304 ~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~  382 (557)
                      .             .-+..|+. .-+..++.++....           .                 ...         +.
T Consensus       155 ~-------------~~~~~g~~~~A~~~y~~Al~~~p-----------~-----------------~~~---------~~  184 (336)
T 1p5q_A          155 T-------------VYFKEGKYKQALLQYKKIVSWLE-----------Y-----------------ESS---------FS  184 (336)
T ss_dssp             H-------------HHHHHTCHHHHHHHHHHHHHHTT-----------T-----------------CCC---------CC
T ss_pred             H-------------HHHHCCCHHHHHHHHHHHHHHhh-----------c-----------------ccc---------CC
Confidence            0             00111221 12333444443211           0                 000         00


Q ss_pred             ecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh
Q 008689          383 KEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK  462 (557)
Q Consensus       383 ~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~  462 (557)
                           .....+.....+..+.+.|..+++.|+|++|+..|++|+++.+.+.               .+++++|.+|..++
T Consensus       185 -----~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g  244 (336)
T 1p5q_A          185 -----NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAVN  244 (336)
T ss_dssp             -----SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTT
T ss_pred             -----hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHCC
Confidence                 0001122334578889999999999999999999999999977543               34889999999999


Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHh
Q 008689          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLA-EFDIKKALEI  511 (557)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l  511 (557)
                      +|++|+.+++++++++|++..+++.++.++..++++++| ...|++++..
T Consensus       245 ~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~  294 (336)
T 1p5q_A          245 DFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  294 (336)
T ss_dssp             CHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999 5567776643

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.87  E-value=1.5e-21  Score=182.40  Aligned_cols=108  Identities=49%  Similarity=0.915  Sum_probs=101.5

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||+++|.+|++|++++|+
T Consensus       117 ~~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~lg--~vI~G~eeaL~gMk~Gek~~v~  193 (224)
T 1q6h_A          117 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  193 (224)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EECCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEcC--CcchhHHHHHcCCCCCCEEEEE
Confidence            34789999999999999 89999999999999999999999999877789999995  8999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |||+++||+.+.++ |||+++++|+|+|++++
T Consensus       194 IP~~laYG~~g~~~-IPp~stLiF~VeL~~ik  224 (224)
T 1q6h_A          194 IPPELAYGKAGVPG-IPPNSTLVFDVELLDVK  224 (224)
T ss_dssp             ECGGGTTTTTCBTT-BCTTCCEEEEEEEEEEC
T ss_pred             ECchhhcCcCCCCC-CCCCCEEEEEEEEEEeC
Confidence            99999999999875 99999999999999873

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.87  E-value=1e-21  Score=170.26  Aligned_cols=113  Identities=34%  Similarity=0.539  Sum_probs=103.0

Q ss_pred             eeecCCC-eEEEEEEcccCc-CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEE
Q 008689           32 KEIGNQG-LKKKLVKEGEGW-DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENA  109 (557)
Q Consensus        32 ~~~~~~g-~~~~~~~~G~G~-~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~  109 (557)
                      ..++++| ++|+++++|+|. ..|+.||.|.|||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|+++
T Consensus        11 ~~~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~----~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~   86 (135)
T 2d9f_A           11 LDILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEE----PELVFTLGDCDVIQALDLSVPLMDVGETA   86 (135)
T ss_dssp             EESSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEE----EEEEEETTSCCSCTTTTTTGGGSCTTCEE
T ss_pred             cEECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecC----CCEEEEeCCCChhHHHHHHHhCCCCCCEE
Confidence            3456667 999999999992 28999999999999999999999984    79999999999999999999999999999


Q ss_pred             EEEecCCcccCCCC-CCCCCCCCCcEEEEEEEEEeeeccc
Q 008689          110 VFTIPPELAYGESG-SPPTIPPNATLQFDVELLSWTSVKD  148 (557)
Q Consensus       110 ~v~ip~~~ayg~~~-~~~~ip~~~~l~~~v~l~~~~~~~d  148 (557)
                      +|+|||++|||+.+ .++.||++++++|+|+|+++....+
T Consensus        87 ~v~ip~~~aYG~~~~~~~~Ip~~~~l~f~vel~~v~~~~~  126 (135)
T 2d9f_A           87 MVTADSKYCYGPQGSRSPYIPPHAALCLEVTLKTAVDRPD  126 (135)
T ss_dssp             EEEECHHHHTCTTCCSSSCCCTTCCEEEEEEEEEEESSCS
T ss_pred             EEEEChhHccCcCCcCCCccCCCCeEEEEEEEEEeecCCc
Confidence            99999999999998 6778999999999999999986544

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=155.97  Aligned_cols=96  Identities=52%  Similarity=0.898  Sum_probs=90.8

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008689           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (557)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~  130 (557)
                      ..++.||.|.|||++++.||++|++++.+++|+.|.+|.+++++||+++|.+|++|++++|+|||++|||+.+.++.||+
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~~~Ip~   83 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAPPKIPG   83 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBTTTBCT
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCCCCcCc
Confidence            67899999999999998899999999876689999999999999999999999999999999999999999998888999


Q ss_pred             CCcEEEEEEEEEeeec
Q 008689          131 NATLQFDVELLSWTSV  146 (557)
Q Consensus       131 ~~~l~~~v~l~~~~~~  146 (557)
                      +++++|+|+|+++...
T Consensus        84 ~~~l~f~v~l~~v~~~   99 (102)
T 2pbc_A           84 GATLVFEVELLKIERR   99 (102)
T ss_dssp             TCCEEEEEEEEEEGGG
T ss_pred             CCeEEEEEEEEEeccc
Confidence            9999999999998753

>1r9h_A FKB-6, FK506 binding protein family; structural genomics, peptidylprolyl isomerase, PSI, protein structure initiative; 1.80A {Caenorhabditis elegans} SCOP: d.26.1.1

Probab=99.83  E-value=2.6e-20  Score=161.48  Aligned_cols=118  Identities=32%  Similarity=0.594  Sum_probs=100.9

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (557)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp  226 (557)
                      .++++.++++++|+|...+..+|.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.||
T Consensus        12 ~~~gl~~~~l~~G~g~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~vi~G~e~~l~gm~~Ge~~~v~ip   91 (135)
T 1r9h_A           12 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   91 (135)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCcEEEEEEEccCCCcCCCCCCEEEEEEEEEECCCCEEEecCcCCCCEEEEeCCCCccHHHHHHHhcCCCCCEEEEEEC
Confidence            678999999999999768999999999999999999999986    7999999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccceeeee--CCcceeE
Q 008689          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEIT--DDKKVIK  274 (557)
Q Consensus       227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~--~d~~~~k  274 (557)
                      |++|||+.|.+     +.|||+++|+|+|+|+++.. .++.  +|++++|
T Consensus        92 ~~~aYG~~g~~-----~~Ip~~~~l~f~v~l~~i~~-~~l~~~~d~~v~k  135 (135)
T 1r9h_A           92 SDYGYGDAGSP-----PKIPGGATLIFEVELFEWSA-EDISPDRDGTILR  135 (135)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEEEC--------------
T ss_pred             hHHcCCCCCCC-----CCcCcCCcEEEEEEEEEeec-CCcCcCCCCcccC
Confidence            99999998875     57999999999999999976 4666  6777765

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.83  E-value=2.6e-19  Score=166.55  Aligned_cols=178  Identities=32%  Similarity=0.466  Sum_probs=140.3

Q ss_pred             eEEEEEEEeeeeecccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHH
Q 008689          371 TVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVA  449 (557)
Q Consensus       371 ~l~~~ieL~~~~~~~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~-~~~~~~~~~~~  449 (557)
                      .......+..+.+..+.|.++.+++...+..++..|+.+++.|+|.+|+..|.+|+.+.+........ .......+...
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHH
Confidence            34445667788889999999999999999999999999999999999999999999998876644332 23334555678


Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ++.|+|.||+++++|++|+.+|++++.++|++.++++++|.+|..+|++++|++.|+++++++|++..+...+..+...+
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  169 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  169 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhcc
Q 008689          530 KEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       530 ~~~~~~~~~~~~~mf~~~~  548 (557)
                      .+..+.++..|++||....
T Consensus       170 ~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          170 KEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             HHHHC--------------
T ss_pred             HHHHHHHHHHHHHHhcccc
Confidence            9999999999999998654

>3o5e_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 1.60A {Homo sapiens} PDB: 3o5f_A

Probab=99.83  E-value=7.5e-20  Score=160.31  Aligned_cols=115  Identities=39%  Similarity=0.605  Sum_probs=105.4

Q ss_pred             eeeee--CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCc
Q 008689          263 VSEIT--DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (557)
Q Consensus       263 ~~d~~--~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~  340 (557)
                      ..|++  .|++++++++++|.|..+|..|+.|+|||++++.||++|+++.  ..+.|++|.+|.+.+|+||+.+|..|++
T Consensus        26 ~~di~~~~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~--~~~~p~~f~lG~g~~i~G~e~~l~gm~~  103 (144)
T 3o5e_A           26 GEDITSKKDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSH--DRNEPFVFSLGKGQVIKAWDIGVATMKK  103 (144)
T ss_dssp             CEECCSSCSSSEEEEEEECCBSSCCCCTTCEEEEEEEEECTTSCEEEESG--GGTSCEEEETTSSSSCHHHHHHHTTCCB
T ss_pred             cccccccCCCeEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEeec--ccCCCeEEEeCCCcccHHHHHHHhCCCC
Confidence            45666  6899999999999997789999999999999999999999864  2578999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (557)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~  382 (557)
                      ||++.|.|++.++||..+..   ..|||+++|+|+|+|+++.
T Consensus       104 Ge~~~v~ipp~~aYG~~g~~---~~Ipp~~~L~f~VeL~~ik  142 (144)
T 3o5e_A          104 GEICHLLCKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  142 (144)
T ss_dssp             TCEEEEEECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             CCEEEEEEChHHCcCCCCCC---CCcCCCCeEEEEEEEEEec
Confidence            99999999999999999875   3799999999999999886

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.82  E-value=4.6e-20  Score=162.60  Aligned_cols=143  Identities=16%  Similarity=0.145  Sum_probs=123.5

Q ss_pred             CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (557)
Q Consensus       390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (557)
                      |.+-.....+..+++.|+.+|+.|+|++|+.+|++|+++.|..+...   ..........+|+|+|.|+.++++|++|+.
T Consensus         2 ~~~~~~~~~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~   78 (159)
T 2hr2_A            2 MKPLKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFDHAGFDAFCHAGLAEALAGLRSFDEALH   78 (159)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCCHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhhhccchHHHHHHHHHHHHHCCCHHHHHH
Confidence            34444567899999999999999999999999999999999743321   011122345589999999999999999999


Q ss_pred             HHHHHHcc-------CCCChHHH----HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          470 LCTKVLDL-------DSRNVKAL----YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       470 ~~~~al~~-------~p~~~ka~----~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      +|++||++       +|++.++|    ||+|.++..+|++++|+.+|++|++++|+++.+..++..+++.++++.++
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~~k  155 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ  155 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH
Confidence            99999999       99999999    99999999999999999999999999999999999999998888777654

>3kz7_A FK506-binding protein 3; FKPB ppiase rapamycin, isomerase, nucleus, phosphoprotein, R isomerase-inhibitor complex; HET: RAP; 1.95A {Mus musculus} SCOP: d.26.1.1 PDB: 1pbk_A*

Probab=99.82  E-value=8e-20  Score=155.29  Aligned_cols=105  Identities=35%  Similarity=0.551  Sum_probs=97.3

Q ss_pred             ccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec-----------cceEEEecCCCCCchHHHHHhhccCCcE
Q 008689          152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-----------DGVEFTVKDGHFCPTLAKAVKTMKKGEK  220 (557)
Q Consensus       152 d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~-----------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~  220 (557)
                      +.++.++++++|+|...|..+|.|++||++++.+|++|+++           +|+.|.+|.+++++||+++|.+|++|++
T Consensus         3 p~g~~~~il~~G~g~~~p~~gd~V~v~Y~g~~~dG~~fdss~~~~~~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge~   82 (119)
T 3kz7_A            3 PPKYTKSILKKGDKTNFPKKGDVVHCWYTGTLPDGTVFDTNIQTSSKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEK   82 (119)
T ss_dssp             SCSEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCCSSSTTTTCCCEEEETTSSSSCHHHHHHHTTCCTTCE
T ss_pred             CCccEEEEEEcCCCCCcCCCCCEEEEEEEEEECCCCEEEeccccccccccCCCCEEEEECCCChhHHHHHHHhCCCCCCE
Confidence            56789999999999778999999999999999999999986           6899999999999999999999999999


Q ss_pred             EEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          221 VLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       221 ~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      ++|.|||++|||+.|.+    ...|||+++|+|+|+|+++
T Consensus        83 ~~v~ip~~~aYG~~g~~----~~~Ip~~~~l~f~veL~~i  118 (119)
T 3kz7_A           83 ARLEIEPEWAYGKKGQP----DAKIPPNTKLIFEVELVDI  118 (119)
T ss_dssp             EEEEECGGGTTCTTCBG----GGTBCTTCCEEEEEEEEEE
T ss_pred             EEEEECcHHhcCCCCCC----CCccCcCCeEEEEEEEEEe
Confidence            99999999999998875    1369999999999999986

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.82  E-value=1.7e-19  Score=155.30  Aligned_cols=115  Identities=30%  Similarity=0.481  Sum_probs=108.1

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ++.+..++++|+.+|+.|+|++|+..|++|+++.|.+.               .+++|+|.||+++++|++|+.+|+++|
T Consensus        10 P~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al   74 (126)
T 4gco_A           10 PELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA---------------ILYSNRAACLTKLMEFQRALDDCDTCI   74 (126)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHhhHHHhhccHHHHHHHHHHHH
Confidence            35688999999999999999999999999999987654               348999999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      +++|++.++|+++|.+|..+|++++|+++|++|++++|+|.+++..++.|
T Consensus        75 ~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           75 RLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999888876

>2f4e_A ATFKBP42; FKBP-like, alpha-beta, signaling protein; 2.32A {Arabidopsis thaliana}

Probab=99.82  E-value=2e-19  Score=163.31  Aligned_cols=128  Identities=34%  Similarity=0.500  Sum_probs=102.1

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCcc-chhhHHHHHHhccCcCcEEEE
Q 008689          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEE-QVIDGLDRAVITMKKNEVALL  346 (557)
Q Consensus       269 d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~-~g~~~~~~~~~~~~~~~~~~lg~~-~vi~gle~~l~~M~~GE~~~v  346 (557)
                      +.++.++++++|.|. .|..|+.|+|||++++. +|++|+++..  .+.|++|.+|.+ .+|+||+.+|.+|++||++.|
T Consensus        48 ~~gl~~~vl~~G~G~-~~~~Gd~V~v~Y~g~l~~dG~~fdss~~--~~~p~~f~lG~g~~vi~G~eeaL~gMk~Ge~~~v  124 (180)
T 2f4e_A           48 DEKVSKQIIKEGHGS-KPSKYSTCFLHYRAWTKNSQHKFEDTWH--EQQPIELVLGKEKKELAGLAIGVASMKSGERALV  124 (180)
T ss_dssp             ETTEEEEEEECCBSC-CBCTTCEEEEEEEEEETTTCCEEEETTT--TTCCEEEETTSCCGGGHHHHHHHTTCCBTCEEEE
T ss_pred             CCceEEEEEeCCCCC-CCCCCCEEEEEEEEEECCCCcEEeccCc--cCCCEEEEeCCCCchhHHHHHHHhCCCCCCEEEE
Confidence            457999999999995 89999999999999998 5999998753  468999999999 999999999999999999999


Q ss_pred             EEcCCCccCCccccccccCCCCCceEEEEEEEeeeeeccc---ccCCChHHHHHHHh
Q 008689          347 TIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE---SWDMNTEEKIEAAG  400 (557)
Q Consensus       347 ~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~---~~~~~~~e~~~~a~  400 (557)
                      .|++.++||..+... ...||++++++|+|+|+++....+   .|.|+.+|+++.|.
T Consensus       125 ~iPp~~aYG~~g~~~-~~~Ip~~s~l~F~VeL~~v~~~~e~~~~~~mt~eErl~~A~  180 (180)
T 2f4e_A          125 HVGWELAYGKEGNFS-FPNVPPMADLLYEVEVIGFDETKEGKARSDMTVEERIGAAD  180 (180)
T ss_dssp             EECGGGTTTTTCBSS-SSCBCTTCCEEEEEEEEEESCBCCC----------------
T ss_pred             EECchHhCCcCCccc-CCCcCCCCeEEEEEEEEEEecCccccccccCCHHHHHhhcC
Confidence            999999999987632 236999999999999999998777   89999999988763

>3o5q_A Peptidyl-prolyl CIS-trans isomerase FKBP5; FK-506 binding domain, HSP90 cochaperone, immunophiline, PEP prolyl isomerase; 0.96A {Homo sapiens} PDB: 3o5m_A 3o5l_A 3o5o_A 3o5p_A 3o5r_A* 4drk_A* 4drm_A* 4drn_A* 4dro_A* 4drp_A* 4drq_A* 3o5j_A 3o5g_A 3o5i_A 3o5k_A

Probab=99.81  E-value=2.6e-19  Score=153.85  Aligned_cols=110  Identities=39%  Similarity=0.607  Sum_probs=101.9

Q ss_pred             CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEE
Q 008689          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (557)
Q Consensus       268 ~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (557)
                      .|.++.++++++|+|...|..|+.|+|||++++.||++|+++..  .+.|++|.+|.+.+|+||+.+|..|++||++.|.
T Consensus        17 ~d~gv~~~i~~~G~G~~~p~~gd~V~v~Y~g~~~dG~~fdss~~--~~~p~~f~lG~g~~i~G~e~~l~gm~~Ge~~~v~   94 (128)
T 3o5q_A           17 KDRGVLKIVKRVGNGEETPMIGDKVYVHYKGKLSNGKKFDSSHD--RNEPFVFSLGKGQVIKAWDIGVATMKKGEICHLL   94 (128)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEECCCCCccCCCCCEEEEEEEEEECCCCEEEecCC--CCCCEEEEECCCCccHHHHHHHhcCCCCCEEEEE
Confidence            68899999999999977899999999999999999999998642  4679999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (557)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~  382 (557)
                      +++.++||..+..   ..|||+++|+|+|+|.++.
T Consensus        95 ip~~~aYG~~g~~---~~Ip~~~~l~f~vel~~i~  126 (128)
T 3o5q_A           95 CKPEYAYGSAGSL---PKIPSNATLFFEIELLDFK  126 (128)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             EChHHcCCCCCCC---CCcCCCCEEEEEEEEEEec
Confidence            9999999999875   3799999999999999886

>2lkn_A AH receptor-interacting protein; FKBP-type domain, immunophilin homolog, protein binding; NMR {Homo sapiens}

Probab=99.81  E-value=4.5e-20  Score=163.06  Aligned_cols=86  Identities=17%  Similarity=0.208  Sum_probs=77.8

Q ss_pred             CCcceeEEEEeCCCCCC-CCCCCCEEEEEEEEEecC--CcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEE
Q 008689          268 DDKKVIKKILKEGDGFE-RPNEGAVVKVKLIGKLQD--GTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVA  344 (557)
Q Consensus       268 ~d~~~~kkil~~G~g~~-~p~~~~~v~v~~~~~l~~--g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~  344 (557)
                      .+.++.|+||++|.|.. .+..|++|+|||+++|.|  |++||+++.  +++|++|.+|.+++|+||+.+|.+|++||++
T Consensus         8 ~~~Gv~~~vl~~G~G~~p~~~~G~~V~vhY~g~l~d~~G~~FDsS~~--rg~P~~f~lG~g~vI~Gwd~gl~~M~~Ge~~   85 (165)
T 2lkn_A            8 REDGIQKRVIQEGRGELPDFQDGTKATFHYRTLHSDDEGTVLDDSRA--RGKPMELIIGKKFKLPVWETIVCTMREGEIA   85 (165)
T ss_dssp             HTTSCCCCEEECCSSCCCCCCTTCEEEEECEEECSSSSCCEEEESTT--TTCCEEEESSSSCSCSHHHHHHTTCCTTCEE
T ss_pred             cCCCeEEEEEECCcCCCCCCCCCCEEEEEEEEEEeCCCccEEEeccc--CCCCEEEEecCCCccHHHHHHHhcCccCceE
Confidence            46679999999999953 235799999999999965  999998864  6899999999999999999999999999999


Q ss_pred             EEEEcCCCccC
Q 008689          345 LLTIAPEYAFG  355 (557)
Q Consensus       345 ~v~i~~~~~yg  355 (557)
                      .|+|+|+++||
T Consensus        86 ~~~ipp~laYG   96 (165)
T 2lkn_A           86 QFLCDIKHVVL   96 (165)
T ss_dssp             EEECCHHHHSS
T ss_pred             EEEECHHHhcC
Confidence            99999999999

>2ppn_A FK506-binding protein 1A; high resolution protein structure, isomerase; 0.92A {Homo sapiens} SCOP: d.26.1.1 PDB: 1b6c_A 1a7x_A 1d7h_A 1d7i_A 1d7j_A* 1f40_A* 1fap_A* 1d6o_A* 1fkd_A* 1fkf_A* 1fkg_A* 1fkh_A* 1fki_A* 1fkj_A* 1fkr_A 1fks_A 1fkt_A 1j4h_A* 1j4i_A* 1j4r_A* ...

Probab=99.80  E-value=4.5e-19  Score=147.68  Aligned_cols=102  Identities=26%  Similarity=0.515  Sum_probs=94.4

Q ss_pred             ceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCC
Q 008689          154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY  229 (557)
Q Consensus       154 ~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~  229 (557)
                      ++.++++++|+|...+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++++.|||++
T Consensus         1 Gl~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~~~ip~~~   80 (107)
T 2ppn_A            1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCCcCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCChHHHHHHHHhCCCCCCEEEEEECHHH
Confidence            367889999999656999999999999999999999987    6999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          230 GFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       230 ~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      |||+.+.+     +.|||+++|+|+|+|+++
T Consensus        81 ayG~~~~~-----~~Ip~~~~l~f~v~l~~v  106 (107)
T 2ppn_A           81 AYGATGHP-----GIIPPHATLVFDVELLKL  106 (107)
T ss_dssp             TTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred             ccCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence            99998875     579999999999999886

>2jwx_A FKBP38NTD, FK506-binding protein 8 variant; apoptosis, beta barrel, central helix, with flexible N-terminal extension, isomerase; NMR {Homo sapiens}

Probab=99.80  E-value=3.4e-19  Score=157.27  Aligned_cols=109  Identities=27%  Similarity=0.401  Sum_probs=99.1

Q ss_pred             ccccceeeeeeeccccc-cCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCC
Q 008689          150 CKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ  228 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~  228 (557)
                      ..++.+.++++++|+|. ..+..||.|+++|++++.+|++|++++|+.|.+|.+++++||+++|.+|++|++++|.|||+
T Consensus        40 ~~sG~v~~~vl~~G~G~~~~p~~gd~V~v~Y~g~l~dG~~fds~~p~~f~lG~g~vi~G~eeaL~gMk~Ge~~~v~IP~~  119 (157)
T 2jwx_A           40 LGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADSK  119 (157)
T ss_dssp             SSSSSEEEEEEECCSTTSCCCCTTEEEEEEEEEECTTSCEEEEEEEEEEETTTTSSCHHHHHHTTTSCTTCEEEEEECGG
T ss_pred             CCCCCEEEEEEEccCCCccCCCCCCEEEEEEEEEECCCCEeecCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEECch
Confidence            34555579999999983 48999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCC-CCCCCCCCCCCCCCeEEEEEEeecccce
Q 008689          229 YGFGEKG-KSASGNEGAVPPNATLQIALELVSWKTV  263 (557)
Q Consensus       229 ~~~g~~g-~~~~~~~~~ip~~~~l~~~v~l~~~~~~  263 (557)
                      +|||+.| .+     +.|||+++|+|+|+|+++...
T Consensus       120 ~aYG~~g~~~-----~~IPp~stLiF~VeL~~i~~~  150 (157)
T 2jwx_A          120 YCYGPQGSRS-----PYIPPHAALCLEVTLKTAVDL  150 (157)
T ss_dssp             GTTTTTCCSS-----SCCCTTCCEEEEEEEEEEEEC
T ss_pred             hcCCcccccC-----CCcCCCCeEEEEEEEEEEEcc
Confidence            9999988 43     579999999999999998653

>2awg_A 38 kDa FK-506 binding protein; FKBP-type, ppiase, BCL-2 inhibitor, SHH signalling antagonist, structural genomics consortium, SGC; 1.60A {Homo sapiens} PDB: 2f2d_A 3ey6_A

Probab=99.79  E-value=5.5e-19  Score=149.66  Aligned_cols=108  Identities=28%  Similarity=0.411  Sum_probs=99.3

Q ss_pred             cccccceeeeeeeccccc-cCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecC
Q 008689          149 ICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP  227 (557)
Q Consensus       149 ~~~d~~~~~~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~  227 (557)
                      +..++.+.++++++|+|. ..+..+|.|++||++++.+|+.|++++|+.|.+|.+++++||+++|.+|++|+++.+.|||
T Consensus         9 ~~~~g~~~~~vl~~G~G~~~~~~~gd~V~v~y~g~~~dG~~~ds~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~~~ip~   88 (118)
T 2awg_A            9 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADS   88 (118)
T ss_dssp             SSSSSSEEEEEEECCCTTCCCCCTTSEEEEEEEEECTTSCEEEEEEEEEEETTSSCSCHHHHHHGGGSCTTCEEEEEECG
T ss_pred             ECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEECCCCEEEEECCCChhHHHHHHHhCCCCCCEEEEEECh
Confidence            445666899999999984 4899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       228 ~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      ++|||+.+.+     +.|||+++|+|+|+|+++.
T Consensus        89 ~~ayG~~~~~-----~~Ip~~~~l~f~v~l~~v~  117 (118)
T 2awg_A           89 KYCYGPQGRS-----PYIPPHAALCLEVTLKTAV  117 (118)
T ss_dssp             GGTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred             HHccCCCCCC-----CccCCCCeEEEEEEEEEec
Confidence            9999998875     5799999999999999874

>1yat_A FK506 binding protein; HET: FK5; 2.50A {Saccharomyces cerevisiae} SCOP: d.26.1.1

Probab=99.79  E-value=6.7e-19  Score=148.03  Aligned_cols=105  Identities=25%  Similarity=0.439  Sum_probs=96.7

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (557)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp  226 (557)
                      .+.++.++++++|+|...+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.+.||
T Consensus         4 ~~~g~~~~~~~~G~g~~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~e~~l~gm~~Ge~~~v~ip   83 (113)
T 1yat_A            4 IEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTIP   83 (113)
T ss_dssp             CGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEEC
T ss_pred             CCCCeEEEEEECCCCcccCCCCCEEEEEEEEEECCCCEEEecCCCCCcEEEEeCCCCccHHHHHHHhCCCCCCEEEEEEC
Confidence            346788999999999555999999999999999999999987    6899999999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      |++|||+.+.+     +.|||+++|+|+|+|+++
T Consensus        84 ~~~ayG~~~~~-----~~Ip~~~~l~f~vel~~i  112 (113)
T 1yat_A           84 GPYAYGPRGFP-----GLIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             GGGTTTTTCBT-----TTBCTTCCEEEEEEEEEE
T ss_pred             HHHCcCCCCCC-----CCcCCCCeEEEEEEEEEe
Confidence            99999998875     579999999999999986

>2lgo_A FKBP; infectious disease, isomerase, giardiasis, ssgcid, structura genomics, seattle structural genomics center for infectious; NMR {Giardia lamblia}

Probab=99.78  E-value=1.5e-18  Score=149.11  Aligned_cols=105  Identities=29%  Similarity=0.479  Sum_probs=95.3

Q ss_pred             cccceeee--eeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEE
Q 008689          151 KDGGIIKK--ILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA  224 (557)
Q Consensus       151 ~d~~~~~~--i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~  224 (557)
                      .+.++.++  ++++|+|...+..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++.|.
T Consensus        20 ~~~Gl~~~K~~l~~G~G~~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~e~aL~gm~~Ge~~~v~   99 (130)
T 2lgo_A           20 GSMSAQLEKKVLTPGDGVTKPQAGKKVTVHYDGRFPDGKQFDSSRSRGKPFQFTLGAGEVIKGWDQGVATMTLGEKALFT   99 (130)
T ss_dssp             SSSSCCCCEEEEECCCSSCCCCTTSEEEEEEEEECTTSCEEECTTTTTCCEEEETTSTTSCHHHHHHHHHSCTTEEEEEE
T ss_pred             CCCceEEEEEEEeccCCCccCCCCCEEEEEEEEEECCCCEEEccCcCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEE
Confidence            45566666  9999999655999999999999999999999987    68999999999999999999999999999999


Q ss_pred             ecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       225 vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      |||++|||+.+.+     +.|||+++|+|+|+|+++
T Consensus       100 ip~~~aYG~~~~~-----~~Ip~~~~l~f~VeL~~i  130 (130)
T 2lgo_A          100 IPYQLAYGERGYP-----PVIPPKATLVFEVELLAV  130 (130)
T ss_dssp             ECTTTSTTTTCCS-----TTSCSSCCEEEEEEEEEC
T ss_pred             ECcHHHCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence            9999999998875     579999999999999874

>4dip_A Peptidyl-prolyl CIS-trans isomerase FKBP14; structural genomics, structural genomics consortium, SGC, PE prolyl CIS-trans isomerase; 1.82A {Homo sapiens}

Probab=99.78  E-value=1.4e-18  Score=148.81  Aligned_cols=109  Identities=28%  Similarity=0.432  Sum_probs=98.8

Q ss_pred             ccccccceeeeeeecccc-ccCCCCCCeEEEEEEEEeC-CCeEeeec------cceEEEecCCCCCchHHHHHhhccCCc
Q 008689          148 DICKDGGIIKKILKEGEK-WENPKDLDEVLVNYEARLE-DGMVVGKA------DGVEFTVKDGHFCPTLAKAVKTMKKGE  219 (557)
Q Consensus       148 d~~~d~~~~~~i~~~g~g-~~~~~~~d~V~v~y~~~~~-~g~~~~~~------~~~~~~~g~~~~~~gl~~~l~~m~~Ge  219 (557)
                      ....+.++.++++++|.+ ...+..+|.|++||+++++ +|++|+++      +|+.|.+|.+++++||+++|.+|++|+
T Consensus         7 ~~~~~~gl~~~~l~~g~~~g~~~~~gd~V~v~Y~g~~~~dG~~fdss~~~~~~~p~~f~lG~~~~i~G~e~~l~gm~~Ge   86 (125)
T 4dip_A            7 ALIPEPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHSTHKHNNGQPIWFTLGILEALKGWDQGLKGMCVGE   86 (125)
T ss_dssp             GGCCCCCCEEEEEECCSCCSCCCCTTCEEEEEEEEEETTTCCEEEEHHHHTTTCCEEEETTSCSSCHHHHHHSTTCCTTC
T ss_pred             eEECCCCeEEEEEEcCCCCCCcCCCCCEEEEEEEEEECCCCcEEEEcccCCCCcCEEEEeCCCChhHHHHHHHhCCCCCC
Confidence            345678889999999873 3789999999999999999 99999976      689999999999999999999999999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008689          220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (557)
Q Consensus       220 ~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (557)
                      ++.|.|||++|||+.|.      +.|||+++|+|+|+|+++..
T Consensus        87 ~~~~~ip~~~aYG~~g~------~~Ip~~~~l~f~vel~~i~~  123 (125)
T 4dip_A           87 KRKLIIPPALGYGKEGK------GKIPPESTLIFNIDLLEIRN  123 (125)
T ss_dssp             EEEEEECGGGTTTTTCB------TTBCTTCCEEEEEEEEEEEC
T ss_pred             EEEEEEChHHhcCCCCC------CCCCCCCeEEEEEEEEEEEc
Confidence            99999999999999885      37999999999999999854

>2y78_A Peptidyl-prolyl CIS-trans isomerase; MIP, ppiase, virulence; HET: SO4 GOL; 0.91A {Burkholderia pseudomallei} PDB: 2ke0_A 2ko7_A* 2l2s_A* 4dz2_A* 4dz3_A*

Probab=99.78  E-value=1.3e-18  Score=149.90  Aligned_cols=105  Identities=30%  Similarity=0.509  Sum_probs=97.2

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v  225 (557)
                      ..+.++.++++++|+| ..+..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.|
T Consensus        25 ~~~~gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~g~vi~G~eeaL~gmk~Ge~~~v~i  103 (133)
T 2y78_A           25 TTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRLTI  103 (133)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTSEEEEEEEEEETTSCEEEETTTTTCCEEEETTSSSSCHHHHHHSTTCBTTCEEEEEE
T ss_pred             ECCCCEEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEeccCcCCCCEEEEeCCCChhHHHHHHHcCCCCCCEEEEEE
Confidence            4567888999999998 68999999999999999999999986    689999999999999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      ||++|||+.+.+     +.|||+++|+|+|+|+++
T Consensus       104 p~~~aYG~~~~~-----~~Ipp~~~l~f~VeL~~I  133 (133)
T 2y78_A          104 PPQLGYGARGAG-----GVIPPNATLVFEVELLDV  133 (133)
T ss_dssp             CGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred             CcHHhCCCCCCC-----CCCCCCCeEEEEEEEEEC
Confidence            999999998875     579999999999999874

>3b7x_A FK506-binding protein 6; isomerase, repeat, rotamase, TPR repeat, williams-beuren syndrome, structural genomics consortium, SGC; 2.10A {Homo sapiens}

Probab=99.78  E-value=6.8e-19  Score=152.31  Aligned_cols=115  Identities=29%  Similarity=0.496  Sum_probs=97.6

Q ss_pred             ceeeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEec-CCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCc
Q 008689          262 TVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQ-DGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (557)
Q Consensus       262 ~~~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~-~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~  340 (557)
                      .+.+++.+.++.++++++|.|. .+..|+.|+|||++++. +|++|+++..  ...|++|.+|.+.+|+||+.+|..|++
T Consensus        18 ~~~~v~~~~gl~~~vl~~G~g~-~~~~gd~V~v~Y~g~l~~~G~~fdss~~--~~~p~~f~lG~g~~i~G~e~aL~gm~~   94 (134)
T 3b7x_A           18 RMLDISGDRGVLKDVIREGAGD-LVAPDASVLVKYSGYLEHMDRPFDSNYF--RKTPRLMKLGEDITLWGMELGLLSMRR   94 (134)
T ss_dssp             TCEESSSSSSEEEEEEECCEEE-ECCTTCEEEEEEEEECTTCSSCSEEC---------CEEC-CCCCCHHHHHHHHTCEE
T ss_pred             ccceeeCCCCEEEEEEEcCCCC-CCCCCCEEEEEEEEEECCCCeEEEecCC--CCCCEEEEcCCcchhHHHHHHHhCCCC
Confidence            4567788999999999999995 57789999999999998 6999987642  467999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (557)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~  382 (557)
                      ||++.|.|+++++||..+..+   .|||++++.|+|+|+++.
T Consensus        95 Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~VeL~~i~  133 (134)
T 3b7x_A           95 GELARFLFKPNYAYGTLGCPP---LIPPNTTVLFEIELLDFL  133 (134)
T ss_dssp             TCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEC
T ss_pred             CCEEEEEECHHHCcCCCCCCC---CcCcCCeEEEEEEEEEEe
Confidence            999999999999999987653   599999999999999875

>2vn1_A 70 kDa peptidylprolyl isomerase; FKBP, FK506, TPR repeat; HET: FK5; 2.35A {Plasmodium falciparum} PDB: 2ofn_A 2ki3_A 3ihz_A* 3ni6_A 3pa7_A

Probab=99.78  E-value=3.7e-18  Score=147.01  Aligned_cols=115  Identities=38%  Similarity=0.637  Sum_probs=101.9

Q ss_pred             eeeeCCcceeEEEEeCC-CC-CCCCCCCCEEEEEEEEEe-cCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCc
Q 008689          264 SEITDDKKVIKKILKEG-DG-FERPNEGAVVKVKLIGKL-QDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKK  340 (557)
Q Consensus       264 ~d~~~d~~~~kkil~~G-~g-~~~p~~~~~v~v~~~~~l-~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~  340 (557)
                      .+++.++.++++++++| .| ...|..|+.|+|||++++ .+|++|+++..  ...|++|.+|.+.+++||+.+|..|++
T Consensus        10 ~~~~~~g~~~~~il~~G~~g~g~~~~~gd~V~v~Y~g~~~~dG~~fd~s~~--~~~p~~f~lG~g~~i~g~e~~l~gm~~   87 (129)
T 2vn1_A           10 VELTADGGVIKTILKKGDEGEENIPKKGNEVTVHYVGKLESTGKVFDSSFD--RNVPFKFHLEQGEVIKGWDICVSSMRK   87 (129)
T ss_dssp             EECSTTSSEEEEEEECCCCSGGGSCCTTCEEEEEEEEEETTTCCEEEEGGG--TTCCEEEETTSSSSCHHHHHHHTTCCT
T ss_pred             cEECCCCCEEEEEEeCCCCCCCCcCCCCCEEEEEEEEEECCCCeEEEecCC--CCccEEEEeCCCCcCHHHHHHHhCCCC
Confidence            34567899999999987 55 267999999999999999 79999998652  468999999999999999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (557)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~  383 (557)
                      ||++.|.|++.++||..+..+   .|||+++++|+|+|+++..
T Consensus        88 Ge~~~v~ip~~~aYG~~~~~~---~Ip~~~~l~f~vel~~v~~  127 (129)
T 2vn1_A           88 NEKCLVRIESMYGYGDEGCGE---SIPGNSVLLFEIELLSFRE  127 (129)
T ss_dssp             TCEEEEEECGGGTTTTTCBTT---TBCTTCCEEEEEEEEEEEC
T ss_pred             CCEEEEEEChHHcCCCCCCCC---CcCCCCeEEEEEEEEEEec
Confidence            999999999999999987643   5999999999999998874

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.77  E-value=4.2e-18  Score=174.48  Aligned_cols=155  Identities=35%  Similarity=0.599  Sum_probs=136.2

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (557)
Q Consensus       391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (557)
                      +.++..+.+..++..|+.+++.++|++|+..|++|+++.+... ....++..........+|+|+|.||+++++|++|+.
T Consensus       215 ~~~~~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~  294 (370)
T 1ihg_A          215 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD  294 (370)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Confidence            5788899999999999999999999999999999999876531 112233344566778889999999999999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +|++||+++|++.++|+++|.+|..+++|++|+++|++|++++|++..+...+..+..++.+.++++++.|++||+
T Consensus       295 ~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~~~~kmf~  370 (370)
T 1ihg_A          295 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAYAKMFA  370 (370)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999984

>3oe2_A Peptidyl-prolyl CIS-trans isomerase; FKBP, ppiase, FK506; HET: TAR SRT; 1.60A {Pseudomonas syringae PV} SCOP: d.26.1.0

Probab=99.77  E-value=1.5e-18  Score=160.71  Aligned_cols=104  Identities=23%  Similarity=0.378  Sum_probs=96.7

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec-cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCC
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA-DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQ  228 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~-~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~  228 (557)
                      ..+.++.++++.+|+| ..|..+|.|+++|++++.+|++|+++ +|+.|.+|  ++|+||+++|.+|++|++++|+|||+
T Consensus       114 ~~~sGl~y~vl~~G~G-~~p~~gd~V~V~Y~g~l~dG~vfDss~~P~~f~lG--~vI~G~eeaL~gMk~Gek~~v~IPp~  190 (219)
T 3oe2_A          114 ELADGILMTELTPGTG-PKPDANGRVEVRYVGRLPDGKIFDQSTQPQWFRLD--SVISGWTSALQNMPTGAKWRLVIPSD  190 (219)
T ss_dssp             ECGGGCEEEEEECCCS-CCCCTTSEEEEEEEEECTTSCEEEECSSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEEECGG
T ss_pred             ECCCCeEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEeeccCCcEEEEec--chhHHHHHHHhCCCCCCEEEEEECch
Confidence            4678899999999998 68999999999999999999999987 78888887  89999999999999999999999999


Q ss_pred             CccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          229 YGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       229 ~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      +|||+.|.+     +.|||+++|+|+|+|+++.
T Consensus       191 lAYG~~g~~-----~~IPpnstLvFeVeLl~Ik  218 (219)
T 3oe2_A          191 QAYGAEGAG-----DLIDPFTPLVFEIELIAVS  218 (219)
T ss_dssp             GTTTTTCBT-----TTBCTTCCEEEEEEEEEEE
T ss_pred             hcCCCCCCC-----CCCCCCCeEEEEEEEEEEe
Confidence            999999875     5799999999999999874

>2d9f_A FK506-binding protein 8 variant; FKBP, rapamycin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.77  E-value=1.1e-18  Score=151.17  Aligned_cols=110  Identities=27%  Similarity=0.398  Sum_probs=100.6

Q ss_pred             cccccceeeeeeeccccc-cCCCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecC
Q 008689          149 ICKDGGIIKKILKEGEKW-ENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP  227 (557)
Q Consensus       149 ~~~d~~~~~~i~~~g~g~-~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~  227 (557)
                      +..++.+.++++++|+|. ..+..||.|++||++++.+|+.|++++|+.|.+|.+++++||+++|.+|++|++++|.|||
T Consensus        13 ~~~~g~l~~~vl~~G~G~~~~~~~gd~V~v~Y~g~~~dG~~fds~~p~~f~lG~g~~i~G~e~~L~gm~~Ge~~~v~ip~   92 (135)
T 2d9f_A           13 ILGNGLLRKKTLVPGPPGSSRPVKGQVVTVHLQTSLENGTRVQEEPELVFTLGDCDVIQALDLSVPLMDVGETAMVTADS   92 (135)
T ss_dssp             SSSSSSSEEEEEECCCSSCCCCCTTSEEEEEEEEEESSSCEEEEEEEEEEETTSCCSCTTTTTTGGGSCTTCEEEEEECH
T ss_pred             ECCCCCEEEEEEEcCCCCCccCCCCCEEEEEEEEEECCCCEEecCCCEEEEeCCCChhHHHHHHHhCCCCCCEEEEEECh
Confidence            445666899999999983 4899999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccCCCC-CCCCCCCCCCCCCCeEEEEEEeecccce
Q 008689          228 QYGFGEKG-KSASGNEGAVPPNATLQIALELVSWKTV  263 (557)
Q Consensus       228 ~~~~g~~g-~~~~~~~~~ip~~~~l~~~v~l~~~~~~  263 (557)
                      ++|||+.+ .+     +.|||+++|+|+|+|+++...
T Consensus        93 ~~aYG~~~~~~-----~~Ip~~~~l~f~vel~~v~~~  124 (135)
T 2d9f_A           93 KYCYGPQGSRS-----PYIPPHAALCLEVTLKTAVDR  124 (135)
T ss_dssp             HHHTCTTCCSS-----SCCCTTCCEEEEEEEEEEESS
T ss_pred             hHccCcCCcCC-----CccCCCCeEEEEEEEEEeecC
Confidence            99999987 43     579999999999999998753

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.75  E-value=8.2e-19  Score=155.86  Aligned_cols=131  Identities=22%  Similarity=0.335  Sum_probs=99.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~  131 (557)
                      .++.||.|.|||++++.||++||+|+..++|+.|.+|.+++|+||+++|.||++|++++|.|||++|||+++        
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~~--------   95 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPS--------   95 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCCC--------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCCC--------
Confidence            688999999999999999999999987668999999999999999999999999999999999999999987        


Q ss_pred             CcEEEEEEEEEeeeccccccccceeeeee-eccc---cccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689          132 ATLQFDVELLSWTSVKDICKDGGIIKKIL-KEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA  192 (557)
Q Consensus       132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i~-~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (557)
                      ..+++.+....|.....+  ..+...... ..|.   +..+-..++.|++|+||+|++.++.+.-
T Consensus        96 ~~lv~~vp~~~f~~~~~~--~~G~~~~~~~~~G~~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v  158 (169)
T 4dt4_A           96 PDLIQYFSRREFMDAGEP--EIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDI  158 (169)
T ss_dssp             GGGEEEEEGGGGTTTCCC--CTTCEEEEECTTSCEEEEEEEEEETTEEEEECSCTTTTCCEEEEE
T ss_pred             hHHEEEeCHHHCCCcCCC--CCCcEEEEECCCCCEEEEEEEEEcCCEEEEeCCCccCCCEEEEEE
Confidence            566666665554321111  111111111 1121   1222335689999999999999887754

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.75  E-value=4.4e-18  Score=149.67  Aligned_cols=131  Identities=18%  Similarity=0.249  Sum_probs=100.1

Q ss_pred             CCCCCCCEEEEEEEEEEc-CCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCC
Q 008689           51 DTPENGDEVEVHYTGTLL-DGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIP  129 (557)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~-dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip  129 (557)
                      ..++.||.|++||++++. ||++|++|+.. .|+.|.+|.+++++||+++|.||++|++++|.|||++|||+++      
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~-~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISK-EPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTT-CCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCC-cCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC------
Confidence            568899999999999998 99999999863 7999999999999999999999999999999999999999886      


Q ss_pred             CCCcEEEEEEEEEeeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689          130 PNATLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKA  192 (557)
Q Consensus       130 ~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (557)
                        ..+++.+....+ ....+ ..+..+..-...|.   +..+-..++.|++++||+|++.++.++-
T Consensus        78 --~~~v~~v~~~~f-~~~~~-~~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v  139 (151)
T 2kr7_A           78 --SSYLQEVPRDQF-EGIEL-EKGMSVFGQTEDNQTIQAIIKDFSATHVMVDYNHPLAGKTLAFRF  139 (151)
T ss_dssp             --SCEEEEEEGGGG-TTSCC-CTTCEEEEEETTTEEEEEEEEEECSSEEEEEECCTTSCCCEEEEE
T ss_pred             --cceEEEEcHHHc-CCCCC-ccCCEEEEECCCCCEEEEEEEEECCCEEEEECCCcCCCCEEEEEE
Confidence              567777776655 11111 11111111111121   1123335689999999999999987764

>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*

Probab=99.75  E-value=1.2e-17  Score=155.17  Aligned_cols=107  Identities=30%  Similarity=0.503  Sum_probs=98.9

Q ss_pred             ccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEE
Q 008689          148 DICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLL  223 (557)
Q Consensus       148 d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i  223 (557)
                      ....+.++.++++.+|+| ..+..||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++++
T Consensus        99 ~~~~~sGl~~~vl~~G~G-~~~~~gd~V~v~Y~g~l~dG~~fdss~~~~~P~~f~lG~g~vi~G~eeaL~gM~~Ge~~~v  177 (209)
T 3uf8_A           99 VVTTESGLKYEDLTEGSG-AEARAGQTVSVHYTGWLTDGQKFDSSKDRNDPFAFVLGGGMVIKGWDEGVQGMKVGGVRRL  177 (209)
T ss_dssp             CEECTTSCEEEEEECCCS-CBCCTTCEEEEEEEEEETTSCEEEESGGGTCCEEEETTSSSSCHHHHHHHTTCBTTCEEEE
T ss_pred             ccCCCCceEEEEEEcCCC-CcCCCCCEEEEEEEEEECCCCEEEEccccCCCEEEEeCCCccchhHHHHHhCCCCCCEEEE
Confidence            345678899999999998 55999999999999999999999987    6899999999999999999999999999999


Q ss_pred             EecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          224 AVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       224 ~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      .|||++|||+.|.+     +.|||+++|+|+|+|+++
T Consensus       178 ~Ipp~~aYG~~g~~-----~~IP~~s~LvF~VeL~~I  209 (209)
T 3uf8_A          178 TIPPQLGYGARGAA-----GVIPPNATLVFEVELLDV  209 (209)
T ss_dssp             EECGGGTTTTTCBT-----TTBCTTCCEEEEEEEEEC
T ss_pred             EECcHHhCCCCCCC-----CCcCCCCeEEEEEEEEEC
Confidence            99999999999875     579999999999999874

>1jvw_A Macrophage infectivity potentiator; chagas disease, X-RAY rotamase, isomeras; 1.70A {Trypanosoma cruzi} SCOP: d.26.1.1

Probab=99.74  E-value=2e-17  Score=147.65  Aligned_cols=121  Identities=26%  Similarity=0.408  Sum_probs=103.7

Q ss_pred             CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEE
Q 008689          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (557)
Q Consensus       268 ~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (557)
                      -+.++.++++++|.|...|..|+.|+|||.+++.||++|+++..  ++.|++|.+  +.+|+||+.+|..|++||++.|.
T Consensus        35 ~~sGl~~~vl~~G~G~~~~~~gd~V~v~Y~g~l~dG~~fdss~~--~g~p~~f~l--g~vI~G~eeaL~gMk~Ge~~~~~  110 (167)
T 1jvw_A           35 LPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRE--RGKPTTFRP--NEVIKGWTEALQLMREGDRWRLF  110 (167)
T ss_dssp             CTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHH--HTSCEEECG--GGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcCCCCcCCCCCCEEEEEEEEEECCCCEEeeccc--cCCCEEEEe--CchhHHHHHHHcCCCCCCEEEEE
Confidence            35679999999999964499999999999999999999998642  457999999  48999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCceEEEEEEEeeeeecccccCCChHHHHH
Q 008689          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIE  397 (557)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~~~~~~~~~e~~~  397 (557)
                      |++.++||..+..   ..|||+++++|+|+|+++.+.  .+.++.++..+
T Consensus       111 Ip~~laYG~~g~~---~~Ipp~s~LiF~VeL~~i~~~--~~~~~~~e~~~  155 (167)
T 1jvw_A          111 IPYDLAYGVTGGG---GMIPPYSPLEFDVELISIKDG--GKGRTAEEVDE  155 (167)
T ss_dssp             ECGGGTTTTTCSS---SSSCTTCCEEEEEEEEEEGGG--CCSCBHHHHHH
T ss_pred             ECchhhCCCCCCC---CCcCCCCeEEEEEEEEEEEcC--CCCCCHHHHHH
Confidence            9999999998764   369999999999999999853  45566665443

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.74  E-value=9.9e-19  Score=153.91  Aligned_cols=130  Identities=26%  Similarity=0.378  Sum_probs=97.9

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCceEEEccCCcccHHHHHHHcccccccEEEEEecCCccc
Q 008689           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (557)
Q Consensus        53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~-------------~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ay  119 (557)
                      ++.||.|+|||++++ ||++||+|+..             ++|+.|.+|.+++++||++||.||++|++++|+|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeecc
Q 008689          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD  193 (557)
Q Consensus       120 g~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~  193 (557)
                      |+++        ..++..+....+... ++....+..... ....+..+-..++.|++++||+|++.++.++-+
T Consensus        81 G~~~--------~~~V~~v~~~~f~~~-~~~~~~G~~~~~-~~~~~~V~~v~~~~V~vD~NHPLAG~~L~F~v~  144 (157)
T 3pr9_A           81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTITI-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIK  144 (157)
T ss_dssp             CCCC--------GGGEEEEEHHHHHHT-TCCCCTTCEEEE-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEE
T ss_pred             CCCC--------hHhEEEcCHHHCCcc-cCCcCCCcEEEe-cCCCeEEEEEcCCEEEEECCCccCCCeEEEEEE
Confidence            9987        456666655444321 111111111111 111233344466899999999999999877653

>1u79_A FKBP-type peptidyl-prolyl CIS-trans isomerase 3; TFKBP13, FK-506 binding protein; 1.85A {Arabidopsis thaliana} SCOP: d.26.1.1 PDB: 1y0o_A

Probab=99.74  E-value=4.9e-18  Score=146.02  Aligned_cols=110  Identities=19%  Similarity=0.342  Sum_probs=97.1

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhh------ccCCc
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGE  219 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge  219 (557)
                      ..+.++.++++.+|+| ..+..||.|++||++++.+|++|+++    +|+.|.+|.+++++||+++|.+      |++|+
T Consensus         9 ~~~~Gl~~~~l~~G~G-~~~~~gd~V~v~Y~g~~~dG~~fdss~~~~~p~~f~lG~~~~i~G~~~~L~G~~~~~~m~~Ge   87 (129)
T 1u79_A            9 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   87 (129)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCeEEEEEEcCCC-CCCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEeCCCCccHHHHHHhcccccccccCCCC
Confidence            3567889999999998 67999999999999999999999986    6899999999999999999998      99999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       220 ~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      ++++.|||++|||+.+.+..+..+.|||+++|+|+|+|+++
T Consensus        88 ~~~v~ip~~~aYG~~~~~~~~~~~~Ip~~~~l~f~vel~~i  128 (129)
T 1u79_A           88 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  128 (129)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEEChHHccCCCCCCccccCCcCCCCCeEEEEEEEEEe
Confidence            99999999999999875311122479999999999999875

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.74  E-value=1.4e-18  Score=161.94  Aligned_cols=168  Identities=23%  Similarity=0.315  Sum_probs=114.1

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCC-------------CCceEEEccCCcccHHHHHHHcccccccEEEEEecCCccc
Q 008689           53 PENGDEVEVHYTGTLLDGTQFDSSRDR-------------STPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (557)
Q Consensus        53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~-------------~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ay  119 (557)
                      ++.||.|.|||++++ ||++||+|+..             +.|+.|.+|.+++++||++||.||++|++++|+|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            678999999999999 99999999752             3799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeeccceEEEe
Q 008689          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTV  199 (557)
Q Consensus       120 g~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~  199 (557)
                      |+++        ..++..+....+... ++....+..... ....+..+-..++.|++|+||+|++.++.+.-+-....-
T Consensus        81 Ge~~--------~~lv~~vp~~~f~~~-~~~~~vG~~~~~-~~~~g~V~~v~~~~V~vD~NHPLAGk~L~F~vev~~v~e  150 (231)
T 3prb_A           81 GKRD--------PSKIKLIPLSEFTKR-GIKPIKGLTITI-DGIPGKIVSINSGRVLVDFNHELAGKEVKYRIKIEEVVD  150 (231)
T ss_dssp             CCCC--------GGGEEEEETHHHHTT-TCCCCTTCEEEE-TTEEEEEEEEETTEEEEECSCTTTTCCEEEEEEEEEECC
T ss_pred             CCCC--------hHHEEecCHHHCCcc-cCCCCCCcEEEe-cCCCEEEEEEcCCEEEEeCCCccCCCEEEEEEEEEEEec
Confidence            9987        455555554444211 111111111111 111122334456899999999999999887654333322


Q ss_pred             cCCCCCchHHHHHhh----cc---CCcEEEEEecCCCcc
Q 008689          200 KDGHFCPTLAKAVKT----MK---KGEKVLLAVKPQYGF  231 (557)
Q Consensus       200 g~~~~~~gl~~~l~~----m~---~Ge~~~i~vp~~~~~  231 (557)
                      ...+-+.+|-.-..+    |+   .++++.|.+|+.+.|
T Consensus       151 at~eei~~~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~  189 (231)
T 3prb_A          151 DKKNIVKEIVKMYVPRLSDVKVTIRNGTVKIELPEFAPF  189 (231)
T ss_dssp             SHHHHHHHHHHHHCTTCCCCEEEEETTEEEEECCTTGGG
T ss_pred             CCHHHHHHHHHHhcCCccceEEEEeCCeEEEEcCHHHhh
Confidence            222222222222221    22   467888888988655

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.73  E-value=6.1e-19  Score=155.15  Aligned_cols=131  Identities=23%  Similarity=0.398  Sum_probs=96.7

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcc
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELA  118 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~-------------~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~a  118 (557)
                      +++.||.|++||++++.||++|++|+.             ...|+.|.+|.+++++||++||.||++|++++|+|||++|
T Consensus         1 ~i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~a   80 (151)
T 1ix5_A            1 MVDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKA   80 (151)
T ss_dssp             CCCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTS
T ss_pred             CCCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHH
Confidence            367899999999999889999999963             2379999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689          119 YGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (557)
Q Consensus       119 yg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (557)
                      ||+++        ..+++.+.+..+... +.....+....... -.+..+-..++.|++||||+|++.++.++-
T Consensus        81 YG~~~--------~~~v~~v~~~~f~~~-~~~~~~G~~~~~~~-~~~~V~~v~~~~v~vD~NHPLAG~~L~F~v  144 (151)
T 1ix5_A           81 YGNRN--------EMLIQKIPRDAFKEA-DFEPEEGMVILAEG-IPATITEVTDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             SCSCC--------STTBCCEETHHHHTS-TTCCCTTEEEESSS-CEEEEEEEETTEEEEECCCSSTTCCEEEEC
T ss_pred             CCCCC--------ccEEEEEEHHHcCcc-CCcccccCEEEECC-eEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence            99976        455666666555320 11111111110000 111122334589999999999999987754

>1fd9_A Protein (macrophage infectivity potentiator prote; FKBP domain, long alpha helix, dimerisation VIA helical INTE isomerase; 2.41A {Legionella pneumophila} SCOP: d.26.1.1 PDB: 2uz5_A 2vcd_A*

Probab=99.72  E-value=2.4e-17  Score=152.81  Aligned_cols=104  Identities=28%  Similarity=0.464  Sum_probs=95.5

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v  225 (557)
                      ..+.++.++++.+|+| ..|..||.|++||++++.+|++|+++    .|+.|.+  +++++||+++|.+|++|++++|+|
T Consensus       103 ~~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~I  179 (213)
T 1fd9_A          103 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQV--SQVIPGWTEALQLMPAGSTWEIYV  179 (213)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEG--GGSCHHHHHHHTTCCTTCEEEEEE
T ss_pred             ECCCccEEEEEecCCC-ccCCCCCEEEEEEEEEECCCCEEeeccccCCCEEEEc--CchhhHHHHHHcCCCCCCEEEEEE
Confidence            4567889999999998 78999999999999999999999987    6888888  589999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      ||++|||+.|.+     +.|||+++|+|+|+|+++.
T Consensus       180 P~~laYG~~g~~-----~~Ipp~stLiF~VeLl~v~  210 (213)
T 1fd9_A          180 PSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK  210 (213)
T ss_dssp             CGGGTTTTCCCS-----SSCCTTCCEEEEEEEEEEE
T ss_pred             CchhccCccCCC-----CCCCCCCeEEEEEEEEEEE
Confidence            999999998864     5799999999999999985

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.72  E-value=7.7e-18  Score=153.54  Aligned_cols=130  Identities=18%  Similarity=0.203  Sum_probs=98.0

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008689           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (557)
Q Consensus        53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~  132 (557)
                      ++.||.|+|+|++++.||++|++|+.. +|+.|.+|.+++||||+++|.+|++|++++|+|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~--------~   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTT-SCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCC--------T
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCC-CCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCC--------h
Confidence            678999999999998899999999864 7999999999999999999999999999999999999999876        4


Q ss_pred             cEEEEEEEEEeeeccccccccceeeeeeecc--ccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEG--EKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (557)
Q Consensus       133 ~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g--~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (557)
                      .+++.|....|.....+. .+..+......|  .+..+-..++.|+++||++|++.++.|+-
T Consensus        74 ~lV~~vp~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~v  134 (196)
T 2kfw_A           74 NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNV  134 (196)
T ss_dssp             TTCEEECGGGCCCSSCCC-TTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCEEEE
T ss_pred             hhEEEEEHHHCCCccCcc-cCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEE
Confidence            455555555443211111 111111111111  11244456789999999999999887654

>2pbc_A FK506-binding protein 2; endoplasmic reticulum, isomerase, polymorphism, rotamase, structural genomics, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.72  E-value=2e-17  Score=136.23  Aligned_cols=91  Identities=25%  Similarity=0.445  Sum_probs=84.8

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008689          167 ENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE  242 (557)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~  242 (557)
                      ..++.||.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|+++++.|||++|||+.+.+     
T Consensus         4 ~~~~~gd~V~v~y~~~~~dG~~~d~s~~~~~p~~f~lG~~~~i~g~~~~l~gm~~Ge~~~v~ip~~~ayG~~~~~-----   78 (102)
T 2pbc_A            4 IKSRKGDVLHMHYTGKLEDGTEFDSSLPQNQPFVFSLGTGQVIKGWDQGLLGMCEGEKRKLVIPSELGYGERGAP-----   78 (102)
T ss_dssp             CCCCTTCEEEEEEEEECTTSCEEEESTTTTCCEEEETTSSSSCHHHHTTSTTCCTTCEEEEEECGGGTTTTTCBT-----
T ss_pred             CcCCCCCEEEEEEEEEECCCCEEEeCCCCCCCEEEEeCCCCccHHHHHHHhCCCCCCEEEEEECHHHCcCCCCCC-----
Confidence            56889999999999999999999986    689999999999999999999999999999999999999998765     


Q ss_pred             CCCCCCCeEEEEEEeecccc
Q 008689          243 GAVPPNATLQIALELVSWKT  262 (557)
Q Consensus       243 ~~ip~~~~l~~~v~l~~~~~  262 (557)
                      +.|||+++|+|+|+|+++..
T Consensus        79 ~~Ip~~~~l~f~v~l~~v~~   98 (102)
T 2pbc_A           79 PKIPGGATLVFEVELLKIER   98 (102)
T ss_dssp             TTBCTTCCEEEEEEEEEEGG
T ss_pred             CCcCcCCeEEEEEEEEEecc
Confidence            57999999999999999875

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.71  E-value=3.3e-17  Score=146.49  Aligned_cols=133  Identities=19%  Similarity=0.205  Sum_probs=97.7

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008689           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (557)
Q Consensus        53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~  132 (557)
                      ++.||.|+|+|++++.||++|++|+.. +|+.|.+|.++++|||+++|.||++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~-~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~--------~   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVS-APLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYD--------E   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSS-SCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCC--------T
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCC-cCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCC--------h
Confidence            678999999999998899999999864 7999999999999999999999999999999999999999886        4


Q ss_pred             cEEEEEEEEEeeeccccccccceeeeeeeccc--cccCCCCCCeEEEEEEEEeCCCeEeeeccce
Q 008689          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE--KWENPKDLDEVLVNYEARLEDGMVVGKADGV  195 (557)
Q Consensus       133 ~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~--g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~~  195 (557)
                      .+++.|....|.....+. .+..+......|.  +..+-..++.|++++|++|++.++.++-+-.
T Consensus        74 ~~v~~v~~~~f~~~~~~~-~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~F~vev~  137 (171)
T 2k8i_A           74 NLVQRVPKDVFMGVDELQ-VGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLKFNVEVV  137 (171)
T ss_dssp             TSEEEEEGGGGTTSSCCC-TTCEEEEEETTEEEEEEEEEECSSEEEEESCCSSCCCEEEEEEEEE
T ss_pred             hhEEEeeHHHCCcccCcc-CCcEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEEEEEEEE
Confidence            455666554443211111 1111111001110  1122234589999999999999988765433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.70  E-value=8.5e-17  Score=138.41  Aligned_cols=115  Identities=24%  Similarity=0.355  Sum_probs=100.9

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      ..+.|..+++.|+.+|+.|+|++|+.+|++|+++.|.+.               .+|+|+|.||+++++|++|+.+|+++
T Consensus         4 ~~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~---------------~~~~nlg~~~~~~~~~~~A~~~~~~a   68 (127)
T 4gcn_A            4 MTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI---------------TFYNNKAAVYFEEKKFAECVQFCEKA   68 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHHHhhhHHHHHHHHHHH
Confidence            456788999999999999999999999999999987543               34899999999999999999999999


Q ss_pred             HccCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          475 LDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       475 l~~~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      |+++|++       .++|+++|.+|..+++|++|++.|++++++.|+ +++...+..+
T Consensus        69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            9998876       468999999999999999999999999999986 4444444443

>1q6h_A FKBP-type peptidyl-prolyl CIS-trans isomerase FKP; chaperone, peptidyl-prolyl isomerase, heat shock protein, FK family; HET: MSE; 1.97A {Escherichia coli} SCOP: d.26.1.1 PDB: 1q6i_A* 1q6u_A

Probab=99.69  E-value=1.3e-16  Score=149.02  Aligned_cols=101  Identities=33%  Similarity=0.658  Sum_probs=92.6

Q ss_pred             cccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689          151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (557)
Q Consensus       151 ~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp  226 (557)
                      .+.++.++++.+|+| ..|..||.|++||++++.+|++|+++    .|+.|.+  +++|+||+++|.+|++|++++|+||
T Consensus       119 ~~sGl~y~vl~~G~G-~~p~~gD~V~V~Y~g~l~dG~vfdss~~~g~p~~f~l--g~vI~G~eeaL~gMk~Gek~~v~IP  195 (224)
T 1q6h_A          119 SSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVIP  195 (224)
T ss_dssp             CTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEEC
T ss_pred             CCCceEEEEEecccC-ccccCCCEEEEEEEEEeCCCCEEeeccccCCCEEEEc--CCcchhHHHHHcCCCCCCEEEEEEC
Confidence            457888999999998 68999999999999999999999987    5888888  5899999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      |+++||+.+.+     + |||+++|+|+|+|+++
T Consensus       196 ~~laYG~~g~~-----~-IPp~stLiF~VeL~~i  223 (224)
T 1q6h_A          196 PELAYGKAGVP-----G-IPPNSTLVFDVELLDV  223 (224)
T ss_dssp             GGGTTTTTCBT-----T-BCTTCCEEEEEEEEEE
T ss_pred             chhhcCcCCCC-----C-CCCCCEEEEEEEEEEe
Confidence            99999998764     3 9999999999999986

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.4e-16  Score=134.84  Aligned_cols=118  Identities=24%  Similarity=0.302  Sum_probs=109.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|+.+++.|+|++|+..|.+|+++.|.+.               .++.|+|.||+++++|++|+.+|+++++
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIE   66 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            3577899999999999999999999999999977543               3489999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~------p~n~~~~~~l~~l~~~~  529 (557)
                      ++|++..+++++|.+|..+|++++|+..|+++++++      |++..+...+..+..++
T Consensus        67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           67 KDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999      99999999988886654

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.65  E-value=1.5e-16  Score=140.52  Aligned_cols=127  Identities=20%  Similarity=0.256  Sum_probs=96.2

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCC
Q 008689           53 PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNA  132 (557)
Q Consensus        53 ~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~  132 (557)
                      ++.||.|++||+++ .||++|++|+     +.|.+|.++++|||+++|.||++|++++|.|||++|||+++        .
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-----~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~~--------~   68 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-----LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPHD--------P   68 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-----EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCCC--------G
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-----EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCCC--------c
Confidence            67899999999999 8999999996     89999999999999999999999999999999999999886        5


Q ss_pred             cEEEEEEEEEeeeccccccccceeeeeeeccc---cccCCCCCCeEEEEEEEEeCCCeEeeeccc
Q 008689          133 TLQFDVELLSWTSVKDICKDGGIIKKILKEGE---KWENPKDLDEVLVNYEARLEDGMVVGKADG  194 (557)
Q Consensus       133 ~l~~~v~l~~~~~~~d~~~d~~~~~~i~~~g~---g~~~~~~~d~V~v~y~~~~~~g~~~~~~~~  194 (557)
                      .+++.|.+..+.....+. .+..+......|.   +..+-..++.|++++|++|++.++.++-+-
T Consensus        69 ~lv~~v~~~~f~~~~~~~-~G~~~~~~~~~G~~~~~~V~~v~~~~v~vD~NHPLAGk~L~F~vev  132 (158)
T 3cgm_A           69 EGVQVVPLSAFPEDAEVV-PGAQFYAQDMEGNPMPLTVVAVEGEEVTVDFNHPLAGKDLDFQVEV  132 (158)
T ss_dssp             GGEEEEEGGGSCTTSCCC-TTCEEEEEETTTEEEEEEEEEEETTEEEEECSCTTTTCCEEEEEEE
T ss_pred             ceEEEEEHHHCCCCCCCc-cCCEEEEECCCCCEEEEEEEEECCCEEEEeCCccccCCEEEEEEEE
Confidence            677888776664211111 1111111111111   112333568999999999999998776543

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.63  E-value=3.6e-16  Score=130.28  Aligned_cols=87  Identities=22%  Similarity=0.429  Sum_probs=75.7

Q ss_pred             cCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCC
Q 008689           48 EGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPT  127 (557)
Q Consensus        48 ~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~  127 (557)
                      ++ ..++.||.|.|+|++++ ||++|++++  .+|+.|.+|.+++||||+++|.||++|++++|.||+...||..+.   
T Consensus        26 ~~-~~~~~gD~V~v~Y~g~~-dG~~fdss~--~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~Yg~~~~---   98 (113)
T 1hxv_A           26 SD-KKLANGDIAIIDFTGIV-DNKKLASAS--AQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL---   98 (113)
T ss_dssp             ----CCCSSEEEEEEEEEEE-TTEECSTTC--CSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG---
T ss_pred             CC-CCCCCCCEEEEEEEEEE-CCEEcccCC--ccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchhhCcCCC---
Confidence            35 57899999999999998 999999996  489999999999999999999999999999999974444998763   


Q ss_pred             CCCCCcEEEEEEEEEe
Q 008689          128 IPPNATLQFDVELLSW  143 (557)
Q Consensus       128 ip~~~~l~~~v~l~~~  143 (557)
                        ++++++|+|+|+++
T Consensus        99 --~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 --QSKPVTFEVVLKAI  112 (113)
T ss_dssp             --GSCCCEEEEEECCB
T ss_pred             --CCCEEEEEEEEEEE
Confidence              56999999999876

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.63  E-value=2.5e-15  Score=134.96  Aligned_cols=122  Identities=24%  Similarity=0.231  Sum_probs=108.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|+.+++.|+|++|+..|.+|+++.+.+.               .+++|+|.||+++++|++|+.+|++++.
T Consensus         9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~   73 (164)
T 3sz7_A            9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP---------------IYLSNRAAAYSASGQHEKAAEDAELATV   73 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4678899999999999999999999999999987543               3488999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD--VKLEYKTLKEKMKEYN  533 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~--~~~~l~~l~~~~~~~~  533 (557)
                      ++|++..+|+++|.+|..+|++++|+.+|+++++++|++..  +...+..++.++.+..
T Consensus        74 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           74 VDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999976  5556666666655443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.62  E-value=4.8e-15  Score=131.40  Aligned_cols=106  Identities=12%  Similarity=0.149  Sum_probs=99.1

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ++.+..+...|..+++.|+|++|+..|++++.+.|.+..               +++|+|.||.++++|++|+.+|++++
T Consensus        33 p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~---------------~~~~lg~~~~~~g~~~~Ai~~~~~al   97 (151)
T 3gyz_A           33 DDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD---------------YIMGLAAIYQIKEQFQQAADLYAVAF   97 (151)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            345778899999999999999999999999999886553               38899999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      .++|+++.+|+++|.||..+|++++|+..|++|+++.|++.
T Consensus        98 ~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A           98 ALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             hhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            99999999999999999999999999999999999999875

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.58  E-value=1.4e-14  Score=126.79  Aligned_cols=123  Identities=20%  Similarity=0.209  Sum_probs=108.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..+++.|+|++|+..|.+++...|.+..               ++.++|.||.++++|++|+.++++++.
T Consensus        16 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~   80 (142)
T 2xcb_A           16 DTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR---------------YFLGLGACRQSLGLYEQALQSYSYGAL   80 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            34667889999999999999999999999998775543               388999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      ++|+++.+++++|.+|..+|++++|++.|+++++++|+++.......++...+...++
T Consensus        81 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l~~  138 (142)
T 2xcb_A           81 MDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAVTA  138 (142)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHHH
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988766666666665554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.58  E-value=1e-14  Score=128.86  Aligned_cols=119  Identities=15%  Similarity=0.181  Sum_probs=105.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..+++.|+|++|+..|.+++...|.+..               +++++|.||..+++|++|+.+|++++.
T Consensus        19 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~g~~~~A~~~~~~al~   83 (148)
T 2vgx_A           19 DTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR---------------FFLGLGACRQAMGQYDLAIHSYSYGAV   83 (148)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH---------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            45677889999999999999999999999998876543               378999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      ++|+++.+++++|.+|..+|++++|++.|+++++++|+++.......++...+.
T Consensus        84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~  137 (148)
T 2vgx_A           84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVSSMLE  137 (148)
T ss_dssp             HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998765555555544443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.57  E-value=1.1e-14  Score=128.84  Aligned_cols=115  Identities=13%  Similarity=0.035  Sum_probs=101.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      +....+...|..+++.|+|++|+..|++|+++.|.+..               +|.++|.||.+++++++|+.+++++++
T Consensus        29 ~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~~~~~~A~~~~~~al~   93 (150)
T 4ga2_A           29 QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK---------------AHRFLGLLYELEENTDKAVECYRRSVE   93 (150)
T ss_dssp             HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCchHHHHHHHHHHHH
Confidence            44666788999999999999999999999999876543               488999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFD-IKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~-~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ++|+++.+++++|.+|..++++++|.+. +++|++++|+|+.+.....++.
T Consensus        94 ~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A           94 LNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             HCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            9999999999999999999999887765 5999999999998877766654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.57  E-value=1.3e-14  Score=125.28  Aligned_cols=121  Identities=29%  Similarity=0.391  Sum_probs=109.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|++|+..|.+|+...+.+.               .+++++|.||..+++|++|+.++++++.++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~~   73 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   73 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            67788999999999999999999999999877543               348899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD-----NRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~-----n~~~~~~l~~l~~~~~~~~~  534 (557)
                      |++..+++++|.+|..+|++++|+..|+++++++|+     +..+...+..+..+.....+
T Consensus        74 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~~e  134 (137)
T 3q49_B           74 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNSIE  134 (137)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998     77888888888766654443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.54  E-value=1.3e-14  Score=128.45  Aligned_cols=115  Identities=17%  Similarity=0.127  Sum_probs=101.5

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      .|..+..++++++|+..|.+|+...+.....               ++++|.+|+++++|++|+.+++++++++|+++.+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~---------------~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a   67 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQKSIK---------------GFYFAKLYYEAKEYDLAKKYICTYINVQERDPKA   67 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHHHHTT---------------HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcccHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence            5777888999999999999999887765544               7899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      |+++|.+|..+|++++|+..|++|++++|++..+...+..+...+.+..+
T Consensus        68 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~  117 (150)
T 4ga2_A           68 HRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDG  117 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSS
T ss_pred             HHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHH
Confidence            99999999999999999999999999999999999999888776655443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.51  E-value=2.7e-13  Score=126.82  Aligned_cols=132  Identities=14%  Similarity=0.075  Sum_probs=107.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH-HHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~-~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      +..+..+|..+++.|+|++|+..|.+++...|.+...... ...........+++++|.+|.++|+|++|+..|++++++
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            5667889999999999999999999999988754321000 000001122333455999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+.....
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~  136 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTA  136 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999988887754443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.50  E-value=1.1e-13  Score=152.94  Aligned_cols=124  Identities=15%  Similarity=0.132  Sum_probs=73.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ++.+..+.+.|+.+.++|+|++|+..|++|+++.|....               +|+|||.+|.++|+|++|+.++++||
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~---------------a~~nLg~~l~~~g~~~eA~~~~~~Al   70 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA---------------AHSNLASVLQQQGKLQEALMHYKEAI   70 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            356778888888888888888888888888888765432               24455555555555555555555555


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      +++|++..+|+++|.+|..+|++++|++.|++|++++|++..+...+..+...+.+.++
T Consensus        71 ~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~e  129 (723)
T 4gyw_A           71 RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPE  129 (723)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            55555555555555555555555555555555555555555555555444444443333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.50  E-value=5.8e-13  Score=118.54  Aligned_cols=123  Identities=24%  Similarity=0.395  Sum_probs=110.7

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHH
Q 008689          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (557)
Q Consensus       392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~  471 (557)
                      .......+..+...|..++..|+|++|+..|.+++...+...               .++.++|.|+..+++|++|+.++
T Consensus         6 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~   70 (166)
T 1a17_A            6 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDA   70 (166)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh---------------HHHHHHHHHHHHcCCHHHHHHHH
Confidence            356678899999999999999999999999999999876432               34889999999999999999999


Q ss_pred             HHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       472 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      .+++.++|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+
T Consensus        71 ~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~  128 (166)
T 1a17_A           71 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  128 (166)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999988877666664333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.50  E-value=2.2e-13  Score=113.44  Aligned_cols=115  Identities=23%  Similarity=0.263  Sum_probs=105.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|.+++...+.+.               .++.++|.++.++++|++|+..+++++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   67 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSAAYAKKGDYQKAYEDGCKTVDL   67 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH---------------HHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            467788999999999999999999999999876542               34889999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      +|++..+++++|.++..+|++++|++.|+++++++|++..+...+..+.+
T Consensus        68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            99999999999999999999999999999999999999988888777643

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.47  E-value=7.3e-13  Score=112.29  Aligned_cols=122  Identities=30%  Similarity=0.321  Sum_probs=109.5

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (557)
                      +.....+..+...|..++..++|+.|+..|.+++...+...               .++.++|.++..+++|++|+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~   70 (131)
T 2vyi_A            6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA---------------VYFCNRAAAYSKLGNYAGAVQDCE   70 (131)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhhchHHHHHHHH
Confidence            34556788899999999999999999999999999866432               347899999999999999999999


Q ss_pred             HHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          473 KVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       473 ~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  127 (131)
T 2vyi_A           71 RAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKL  127 (131)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999988888887776554

>1hxv_A Trigger factor; FKBP fold, ppiase, chaperone; NMR {Mycoplasma genitalium} SCOP: d.26.1.1

Probab=99.46  E-value=1.5e-13  Score=114.40  Aligned_cols=82  Identities=17%  Similarity=0.267  Sum_probs=72.9

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCC
Q 008689          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEG  243 (557)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp-~~~~~g~~g~~~~~~~~  243 (557)
                      ..++.||.|+++|++++ +|+.|+++  +|+.|.+|.+++++||+++|.+|++|+++.|.|| |.. ||..+.       
T Consensus        28 ~~~~~gD~V~v~Y~g~~-dG~~fdss~~~p~~f~lG~g~vi~G~ee~L~Gmk~Ge~~~v~i~fP~~-Yg~~~~-------   98 (113)
T 1hxv_A           28 KKLANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSD-YHVKEL-------   98 (113)
T ss_dssp             -CCCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTT-SSSSGG-------
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEcccCCccCEEEEECCCChhHHHHHHHCCCCCCCEEEEEEeCchh-hCcCCC-------
Confidence            36788999999999999 99999987  8999999999999999999999999999999996 553 887653       


Q ss_pred             CCCCCCeEEEEEEeecc
Q 008689          244 AVPPNATLQIALELVSW  260 (557)
Q Consensus       244 ~ip~~~~l~~~v~l~~~  260 (557)
                         ++++|+|+|+|+++
T Consensus        99 ---~g~~l~F~V~l~~V  112 (113)
T 1hxv_A           99 ---QSKPVTFEVVLKAI  112 (113)
T ss_dssp             ---GSCCCEEEEEECCB
T ss_pred             ---CCCEEEEEEEEEEE
Confidence               47999999999876

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.1e-13  Score=117.03  Aligned_cols=117  Identities=32%  Similarity=0.557  Sum_probs=105.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..++|.+|+..|.++++..+..            .....++.++|.||.++++|++|+.+|++++.+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~   94 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATP------------QDQAVLHRNRAACHLKLEDYDKAETEASKAIEK   94 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccc------------hHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh
Confidence            36778899999999999999999999999876532            123556889999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      +|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus        95 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A           95 DGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998888777764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.45  E-value=7.2e-13  Score=112.94  Aligned_cols=116  Identities=10%  Similarity=0.086  Sum_probs=102.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+++.|+|++|+..|.++++..|.+..            ...+++++|.||+++++|++|+.++++++..+|
T Consensus         3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p   70 (129)
T 2xev_A            3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY------------TPNALYWLGESYYATRNFQLAEAQFRDLVSRYP   70 (129)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            45678899999999999999999999998775431            223578999999999999999999999999999


Q ss_pred             CC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          480 RN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       480 ~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ++   ..+++++|.+|..+|++++|+..|+++++..|++..+.....++..
T Consensus        71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            99   8999999999999999999999999999999999877666665544

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.45  E-value=4.1e-13  Score=114.57  Aligned_cols=116  Identities=30%  Similarity=0.386  Sum_probs=105.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..+++.++|++|+..|.++++..+.+.               .++.++|.+|..+++|++|+.++++++..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~a~~~   79 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA---------------KLYSNRAACYTKLLEFQLALKDCEECIQL   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHTTTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            467888999999999999999999999998765432               34889999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      +|.+..+++++|.+|..+|++++|++.|+++++++|++..+...+..+...
T Consensus        80 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           80 EPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998888877776544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.45  E-value=6.6e-13  Score=112.73  Aligned_cols=119  Identities=27%  Similarity=0.338  Sum_probs=106.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|.+++...+.+.               .+++++|.+|..+++|++|+.++++++..
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~   67 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIEV   67 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH---------------HHHHHHHHHHHHhccHHHHHHHHHHHHhh
Confidence            467789999999999999999999999999866432               34889999999999999999999999999


Q ss_pred             CCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 008689          478 DSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       478 ~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~  532 (557)
                      +|.+       ..+++++|.+|..+|++++|++.|++++++.| +..+...+..+...+++.
T Consensus        68 ~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           68 GRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            8877       99999999999999999999999999999999 677888888887766543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.44  E-value=9.7e-13  Score=124.37  Aligned_cols=129  Identities=20%  Similarity=0.280  Sum_probs=108.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh-hcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIE-YDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~-~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ..+...|..+++.|+|++|+..|.+++++.+ .+.               .+++++|.||.++++|++|+.++++++..+
T Consensus         8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~   72 (228)
T 4i17_A            8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS---------------VTAYNCGVCADNIKKYKEAADYFDIAIKKN   72 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc---------------HHHHHHHHHHHHhhcHHHHHHHHHHHHHhC
Confidence            5788999999999999999999999999876 322               247789999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV-------KLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~-------~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      |++..+++++|.+|..+|++++|++.|+++++++|++...       ...+..+...+.+.++... .|.+.+
T Consensus        73 p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~-~~~~al  144 (228)
T 4i17_A           73 YNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEE-NYKHAT  144 (228)
T ss_dssp             CSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHT
T ss_pred             cchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHH-HHHHHH
Confidence            9999999999999999999999999999999999999844       5555555555444444332 444444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.44  E-value=2.4e-13  Score=115.58  Aligned_cols=102  Identities=13%  Similarity=0.057  Sum_probs=89.3

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .+...|..+++.|+|++|+..|++|+...|.+..               +++++|.++..++++++|+..++++++++|+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~   83 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE---------------AWRSLGLTQAENEKDGLAIIALNHARMLDPK   83 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            4578899999999999999999999999876543               3889999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      +..+++.+|.+|..+|++++|+..|+++++++|++..
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           84 DIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999999999999999999998753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.43  E-value=5.3e-13  Score=147.59  Aligned_cols=123  Identities=15%  Similarity=0.162  Sum_probs=112.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+.+.|+.+++.|+|++|+..|++|+++.|...               .+|+|+|.+|.++++|++|+.+|++|++++
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~---------------~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~  107 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA---------------DAYSNMGNTLKEMQDVQGALQCYTRAIQIN  107 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999987644               348999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      |++..+|+++|.+|..+|++++|++.|++|++++|++..+...+..+...+.+..+..
T Consensus       108 P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~  165 (723)
T 4gyw_A          108 PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD  165 (723)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence            9999999999999999999999999999999999999999999988877766554433

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.43  E-value=5.2e-13  Score=125.81  Aligned_cols=127  Identities=17%  Similarity=0.147  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----------hCHHHHHHH
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----------KDYKQAEKL  470 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----------~~~~~A~~~  470 (557)
                      +...|..+++.|++++|+..|++|+++.|.+.               .++.++|.++.++           |++++|+..
T Consensus        42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~  106 (217)
T 2pl2_A           42 LYWLARTQLKLGLVNPALENGKTLVARTPRYL---------------GGYMVLSEAYVALYRQAEDRERGKGYLEQALSV  106 (217)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHhhhhhhhhcccccCHHHHHHH
Confidence            44445555555555555555555554444322               2366777777777           777777777


Q ss_pred             HHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       471 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      ++++++++|++..+++.+|.+|..+|++++|++.|++|++++ ++..+...+..+...+.+..+... .|++.+.
T Consensus       107 ~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~  179 (217)
T 2pl2_A          107 LKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALA-QYAKALE  179 (217)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            777777777777777777777777777777777777777777 677777777776666665555442 5555544

>2kr7_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLY; protein, rotamase; NMR {Helicobacter pylori}

Probab=99.42  E-value=7.3e-13  Score=116.32  Aligned_cols=81  Identities=19%  Similarity=0.294  Sum_probs=73.2

Q ss_pred             cCCCCCCeEEEEEEEEeC-CCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCC
Q 008689          167 ENPKDLDEVLVNYEARLE-DGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNE  242 (557)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~-~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~  242 (557)
                      ..++.|+.|+++|++++. +|++|+++   +|+.|.+|.+++++||+++|.+|++|+++.+.|||+.|||+.+       
T Consensus         5 ~~i~~gd~V~v~Y~g~~~~dG~~fdss~~~~p~~f~~G~g~vipg~e~aL~gm~~Ge~~~v~ipp~~aYG~~~-------   77 (151)
T 2kr7_A            5 DLESIKQAALIEYEVREQGSSIVLDSNISKEPLEFIIGTNQIIAGLEKAVLKAQIGEWEEVVIAPEEAYGVYE-------   77 (151)
T ss_dssp             CCTTSCCEEEEEEEEEESSCSCEEEESTTTCCEEEETTCCCSCHHHHHHHTTCCBTCEEEEEECGGGTTCSSC-------
T ss_pred             cCCCCCCEEEEEEEEEECCCCCEEEeCCCCcCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEecHHHcCCCC-------
Confidence            456789999999999998 99999987   6999999999999999999999999999999999999999753       


Q ss_pred             CCCCCCCeEEEEEEeecc
Q 008689          243 GAVPPNATLQIALELVSW  260 (557)
Q Consensus       243 ~~ip~~~~l~~~v~l~~~  260 (557)
                            ..+++.+....|
T Consensus        78 ------~~~v~~v~~~~f   89 (151)
T 2kr7_A           78 ------SSYLQEVPRDQF   89 (151)
T ss_dssp             ------SCEEEEEEGGGG
T ss_pred             ------cceEEEEcHHHc
Confidence                  457888888777

>4dt4_A FKBP-type 16 kDa peptidyl-prolyl CIS-trans isomer; FKBP domain, IF domain, chaperone, peptidyl-prolyl isomerase isomerase; 1.35A {Escherichia coli}

Probab=99.41  E-value=3.3e-13  Score=119.75  Aligned_cols=81  Identities=20%  Similarity=0.356  Sum_probs=73.1

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCC
Q 008689          168 NPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEG  243 (557)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~  243 (557)
                      .++.|+.|+++|++++.+|++|+++    +|+.|.+|.+++++||+++|.+|++|++++|.|||++|||+.         
T Consensus        24 ~i~~gd~V~v~Y~g~l~dG~vfDss~~~~~P~~f~lG~g~vipG~eeaL~gm~~Ge~~~v~Ipp~~AYG~~---------   94 (169)
T 4dt4_A           24 SVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVP---------   94 (169)
T ss_dssp             SCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHTTCCTTCEEEEEECGGGTTCCC---------
T ss_pred             cCCCCCEEEEEEEEEECCCCEEEecCCCCCCEEEEECCCCccHHHHHHHcCCCCCCEEEEEEChHHhcCCC---------
Confidence            5778999999999999999999987    799999999999999999999999999999999999999975         


Q ss_pred             CCCCCCeEEEEEEeeccc
Q 008689          244 AVPPNATLQIALELVSWK  261 (557)
Q Consensus       244 ~ip~~~~l~~~v~l~~~~  261 (557)
                          +..+++.+....|.
T Consensus        95 ----~~~lv~~vp~~~f~  108 (169)
T 4dt4_A           95 ----SPDLIQYFSRREFM  108 (169)
T ss_dssp             ----CGGGEEEEEGGGGT
T ss_pred             ----ChHHEEEeCHHHCC
Confidence                44567777777774

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.40  E-value=1.2e-12  Score=128.58  Aligned_cols=102  Identities=31%  Similarity=0.446  Sum_probs=95.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..++..|+.+++.|+|++|+..|.+|+...+.+.               .+++|+|.||.++++|++|+.+++++++++
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~~~   68 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   68 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999877543               348899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      |++.++++++|.+|..+|++++|+..|++|++++|++
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999999999999999999976

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.40  E-value=4.5e-13  Score=117.67  Aligned_cols=105  Identities=18%  Similarity=0.199  Sum_probs=92.1

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH----------HHHHHHHHHHHccCC
Q 008689          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----------KQAEKLCTKVLDLDS  479 (557)
Q Consensus       410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----------~~A~~~~~~al~~~p  479 (557)
                      -+.+.|++|+..|.+|+.+.|.+...               ++|+|.+++.++++          ++|+..|++||+++|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea---------------~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP   77 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADN---------------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP   77 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc
Confidence            34577999999999999998876543               88999999999876          599999999999999


Q ss_pred             CChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          480 RNVKALYRRAQAYIQMA-----------DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg-----------~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ++..|||++|.||..+|           +|++|+++|++|++++|++...++.+..+.+.-
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~  138 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAP  138 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHH
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCH
Confidence            99999999999999985           899999999999999999987777776654444

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.39  E-value=1e-12  Score=134.77  Aligned_cols=79  Identities=16%  Similarity=0.067  Sum_probs=53.3

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      +|+|+|.++.++++|++|+.+|+++|+++|++..+|+++|.++..+|++++|+++|+++++++|+|..++..+..+...
T Consensus       168 a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          168 VWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            4666666666666666666666666666666666666666666666666666666666666666666666666666555

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.39  E-value=4.5e-12  Score=115.35  Aligned_cols=146  Identities=13%  Similarity=0.148  Sum_probs=116.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH------HHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK------ALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~nla~~~~  459 (557)
                      +..+.+.|+.+++.|+|++|+..|++|+++.|.+...             .++-.....      .....++.++|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            5567889999999999999999999999987754321             000000011      112455778888999


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      ..++++.|+..+.+++.++|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+...+.+.++... .
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~-~  163 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVK-Y  163 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-H
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999999999999999888877776654 6


Q ss_pred             HHHHhh
Q 008689          540 YGNMFA  545 (557)
Q Consensus       540 ~~~mf~  545 (557)
                      |++.++
T Consensus       164 ~~~al~  169 (184)
T 3vtx_A          164 FKKALE  169 (184)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666554

>3pr9_A FKBP-type peptidyl-prolyl CIS-trans isomerase; FKBP protein, chaperone; 1.95A {Methanocaldococcus jannaschii} SCOP: d.26.1.0 PDB: 3pra_A

Probab=99.39  E-value=3.6e-13  Score=118.39  Aligned_cols=79  Identities=20%  Similarity=0.370  Sum_probs=69.1

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCcc
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~  231 (557)
                      ++.||.|+++|++++ +|++|+++                 +|+.|.+|.+++++||+++|.+|++|++++|.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~a~~~g~~~~~~~~~P~~f~vG~g~vi~G~eeaL~gm~~Ge~~~v~Ipp~~aY   80 (157)
T 3pr9_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (157)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHHTCCCTTSCCSCEEEETTSSSSCHHHHHHHHHCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccccccccccccccccCCCCEEEEECCCcHHHHHHHHHcCCCCCCEEEEEECcHHhc
Confidence            567899999999999 99999986                 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       232 g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      |+.+.             .++..+....|.
T Consensus        81 G~~~~-------------~~V~~v~~~~f~   97 (157)
T 3pr9_A           81 GKRDP-------------SKIKLIPLSEFT   97 (157)
T ss_dssp             CCCCG-------------GGEEEEEHHHHH
T ss_pred             CCCCh-------------HhEEEcCHHHCC
Confidence            97654             355666665553

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.39  E-value=4.3e-12  Score=119.44  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHH
Q 008689          420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD  499 (557)
Q Consensus       420 ~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~  499 (557)
                      ..|.+|+..+..        ..+...-...+++++|.+|..+|++++|+..++++++++ +++.+++++|.+|..+|+++
T Consensus        98 g~~~~A~~~~~~--------al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           98 GYLEQALSVLKD--------AERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             HHHHHHHHHHHH--------HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHH
T ss_pred             cCHHHHHHHHHH--------HHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHH
Confidence            555666655432        122223346678999999999999999999999999999 99999999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       500 ~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      +|+..|+++++++|++..+...+..+...+.+.++..
T Consensus       169 ~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~  205 (217)
T 2pl2_A          169 EALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAA  205 (217)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHH
Confidence            9999999999999999999888888877766655443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.36  E-value=2.7e-12  Score=131.64  Aligned_cols=131  Identities=11%  Similarity=0.050  Sum_probs=98.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC-HHHHHHHHHHHHc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD-YKQAEKLCTKVLD  476 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~-~~~A~~~~~~al~  476 (557)
                      .+..+...|..+.+.|+|++|+..|++|+.+.|.+..               +|+++|.++.++++ |++|+.+|+++|.
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~---------------a~~~~g~~l~~~g~d~~eAl~~~~~al~  160 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT---------------VWHFRRVLLKSLQKDLHEEMNYITAIIE  160 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH---------------HHHHHHHHHHHcccCHHHHHHHHHHHHH
Confidence            4566777888888888888888888888887775443               37788888888886 8888888888888


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      ++|++..+|+++|.+|..+|++++|+.+|++|++++|+|..++..+..+...+.+.++.. ..|.+++
T Consensus       161 l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl-~~~~~al  227 (382)
T 2h6f_A          161 EQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNEL-QYVDQLL  227 (382)
T ss_dssp             HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHH-HHHHHHH
T ss_pred             HCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Confidence            888888888888888888888888888888888888888877777777766665544332 2444443

>2kfw_A FKBP-type peptidyl-prolyl CIS-trans isomerase SLYD; protein, cobalt, copper, cytoplasm, metal- binding, nickel, rotamase, zinc; NMR {Escherichia coli}

Probab=99.36  E-value=1.3e-12  Score=119.05  Aligned_cols=124  Identities=18%  Similarity=0.140  Sum_probs=86.7

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i  245 (557)
                      ++.++.|+++|++++.+|++|+++   +|+.|.+|.+++++||+++|.+|++|++++|.|||+.|||+.+.         
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~vGe~~~v~Ippe~aYGe~~~---------   73 (196)
T 2kfw_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE---------   73 (196)
T ss_dssp             CCSSCEEEEEEEEEETTTEEEEECCTTSCCEEESSSSSSCHHHHHHHSSSCTTCEEEEECSTTTTSSCCCT---------
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecCCCCCEEEEECCCCcchHHHHHHcCCCCCCEEEEEeCcHHhcCCCCh---------
Confidence            567899999999999899999987   79999999999999999999999999999999999999997543         


Q ss_pred             CCCCeEEEEEEeecccceeeeeCCcceeEEEEeCC--CCCCCCCCCCEEEEEEEEEecCCcEE
Q 008689          246 PPNATLQIALELVSWKTVSEITDDKKVIKKILKEG--DGFERPNEGAVVKVKLIGKLQDGTVF  306 (557)
Q Consensus       246 p~~~~l~~~v~l~~~~~~~d~~~d~~~~kkil~~G--~g~~~p~~~~~v~v~~~~~l~~g~~~  306 (557)
                          .+++.|.+..|.... ....+..+.---..|  .+...-..+++|+|.|+..|++.++.
T Consensus        74 ----~lV~~vp~~~f~~~~-~~~~G~~~~~~~~~G~~~~~V~~v~~~~V~vD~NHPLAGk~L~  131 (196)
T 2kfw_A           74 ----NLVQRVPKDVFMGVD-ELQVGMRFLAETDQGPVPVEITAVEDDHVVVDGNHMLAGQNLK  131 (196)
T ss_dssp             ----TTCEEECGGGCCCSS-CCCTTCEEEEEETTEEEEEEBCCCCSSSEEECCCCTTSCCCCE
T ss_pred             ----hhEEEEEHHHCCCcc-CcccCCEEEEECCCCcEEEEEEEEcCCEEEEeCCCCCCCCeEE
Confidence                355666666663211 111222221100111  01122234566777777777655443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.35  E-value=1e-12  Score=110.68  Aligned_cols=97  Identities=16%  Similarity=0.112  Sum_probs=83.5

Q ss_pred             HcCcHHHHHHHHHHHHHH---hhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689          411 KAGKYARASKRYEKAVKY---IEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR  487 (557)
Q Consensus       411 ~~~~y~~A~~~y~~Al~~---~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~  487 (557)
                      ..|+|++|+..|.+|++.   .+.               ...++.++|.+|.++++|++|+.+++++++++|++..++++
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~---------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   66 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKD---------------LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF   66 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCcc---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH
Confidence            368899999999999987   332               33458899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      +|.+|..+|++++|+..|++++.++|++..+....
T Consensus        67 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~  101 (117)
T 3k9i_A           67 YAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYK  101 (117)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            99999999999999999999999999998765433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.35  E-value=1.6e-12  Score=137.61  Aligned_cols=119  Identities=25%  Similarity=0.403  Sum_probs=108.3

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      .+.+..+...|+.+++.|+|++|+..|++|+++.+...               .+++|+|.||.++++|++|+.++++++
T Consensus         3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al   67 (477)
T 1wao_1            3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA---------------IYYGNRSLAYLRTECYGYALGDATRAI   67 (477)
T ss_dssp             HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            35678889999999999999999999999999876542               348899999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +++|++..+++++|.+|..+|++++|++.|++|++++|++..+...+..+...+
T Consensus        68 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           68 ELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             HSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999988888888774444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.35  E-value=1.8e-11  Score=102.66  Aligned_cols=114  Identities=32%  Similarity=0.418  Sum_probs=103.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..++..++|++|+..|.+++...+...               .++.++|.++.+++++++|+..+++++..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   73 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELD   73 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            56678899999999999999999999998765322               247899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      |.+..+++.+|.+|..+|++++|+..|++++.++|++..+...+..+..
T Consensus        74 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  122 (125)
T 1na0_A           74 PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ  122 (125)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999888887776654

>1ix5_A FKBP; ppiase, isomerase; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.26.1.1

Probab=99.35  E-value=2.4e-13  Score=119.39  Aligned_cols=80  Identities=21%  Similarity=0.393  Sum_probs=70.6

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCcc
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~  231 (557)
                      ++.||.|++||++++.+|++|+++                 +|+.|.+|.+++++||+++|.+|++|+++++.|||++||
T Consensus         2 i~~gd~V~v~Y~g~~~dG~~fdss~~~~a~~~g~~~~~~~~~P~~f~~G~g~vi~G~eeaL~gm~~Ge~~~v~ipp~~aY   81 (151)
T 1ix5_A            2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             CCCCCEEEEEEEEEECCCCEEEecchhhcccccccccccCCCCEEEEECCCChhHHHHHHHcCCCCCCEEEEEECcHHHC
Confidence            568899999999999999999986                 489999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          232 GEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       232 g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      |+.+.             .+++.+.+..|.
T Consensus        82 G~~~~-------------~~v~~v~~~~f~   98 (151)
T 1ix5_A           82 GNRNE-------------MLIQKIPRDAFK   98 (151)
T ss_dssp             CSCCS-------------TTBCCEETHHHH
T ss_pred             CCCCc-------------cEEEEEEHHHcC
Confidence            97643             456667777664

>2k8i_A SLYD, peptidyl-prolyl CIS-trans isomerase; ppiase, chaperone, rotamase; NMR {Escherichia coli}

Probab=99.32  E-value=4.2e-11  Score=106.86  Aligned_cols=80  Identities=20%  Similarity=0.292  Sum_probs=70.9

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec---cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA---DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~---~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i  245 (557)
                      ++.|+.|+++|++++.+|++|+++   +|+.|.+|.+++++||+++|.+|++|++++|.|||+.|||+.+.         
T Consensus         3 i~~gd~V~v~Y~g~~~dG~~fdss~~~~P~~f~lG~g~vipG~eeaL~Gm~~Ge~~~v~ippe~aYG~~~~---------   73 (171)
T 2k8i_A            3 VAKDLVVSLAYQVRTEDGVLVDESPVSAPLDYLHGHGSLISGLETALEGHEVGDKFDVAVGANDAYGQYDE---------   73 (171)
T ss_dssp             CCTTEEEEEEEEEEETTSCEEEECCSSSCEEEETTSCSSCSHHHHHHTTCCTTCEEEEEEETTTSSCCCCT---------
T ss_pred             CCCCCEEEEEEEEEECCCCEEeeccCCcCEEEEECCCCcchHHHHHHcCCCCCCEEEEEECcHHhcCCCCh---------
Confidence            567899999999999999999987   69999999999999999999999999999999999999997643         


Q ss_pred             CCCCeEEEEEEeeccc
Q 008689          246 PPNATLQIALELVSWK  261 (557)
Q Consensus       246 p~~~~l~~~v~l~~~~  261 (557)
                          .+++.+.+..|.
T Consensus        74 ----~~v~~v~~~~f~   85 (171)
T 2k8i_A           74 ----NLVQRVPKDVFM   85 (171)
T ss_dssp             ----TSEEEEEGGGGT
T ss_pred             ----hhEEEeeHHHCC
Confidence                456677776664

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.32  E-value=2.2e-11  Score=110.75  Aligned_cols=118  Identities=15%  Similarity=0.054  Sum_probs=91.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-H------HHHHHHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-K------KQAKALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~-~------~~~~~~~~~~~~nla~~~~  459 (557)
                      +..+...|..+++.|++++|+..|.+++...+.....            ..+. .      .........++.++|.+|.
T Consensus        39 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~  118 (184)
T 3vtx_A           39 VETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYD  118 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            4556677777888888888888888777665432211            0000 0      0111112456889999999


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ++++|++|+..++++++++|.++.+++++|.+|..+|++++|++.|++|++++|++.
T Consensus       119 ~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          119 SMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHHHH
T ss_pred             HhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCccCH
Confidence            999999999999999999999999999999999999999999999999999999874

>3prb_A FKBP-type peptidyl-prolyl CIS-trans isomerase; chaperone; 2.20A {Methanocaldococcus jannaschii} PDB: 3prd_A

Probab=99.31  E-value=2e-12  Score=120.41  Aligned_cols=67  Identities=22%  Similarity=0.419  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCcc
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~  231 (557)
                      ++.||.|++||++++ +|++|+++                 +|+.|.+|.|++++||+++|.+|++|+++++.|||++||
T Consensus         2 i~~Gd~V~v~Y~g~l-dG~vfDss~~~~A~e~gi~~~~~~~~P~~f~lG~g~vIpG~eeaL~Gm~vGek~~v~Ippe~AY   80 (231)
T 3prb_A            2 VEKGKMVKISYDGYV-DGKLFDTTNEELAKKEGIYNPAMIYGPVAIFAGEGQVLPGLDEAILEMDVGEEREVVLPPEKAF   80 (231)
T ss_dssp             CCTTCEEEEEEEEEE-TTEEEEESCHHHHHHTTCCCTTSCCSCEEEETTSSSSCHHHHHHHHTCCTTCEEEEEECGGGTT
T ss_pred             CCCCCEEEEEEEEEE-CCEEEEeccchhcccccccccccCCCCEEEEeCCCcHHHHHHHHHcCCCCCCEEEEEeCcHHhc
Confidence            567899999999999 99999986                 389999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 008689          232 GEKGK  236 (557)
Q Consensus       232 g~~g~  236 (557)
                      |+.+.
T Consensus        81 Ge~~~   85 (231)
T 3prb_A           81 GKRDP   85 (231)
T ss_dssp             CCCCG
T ss_pred             CCCCh
Confidence            97654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.30  E-value=1.4e-11  Score=114.83  Aligned_cols=130  Identities=22%  Similarity=0.181  Sum_probs=110.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|+.++..|+|++|+..|.+++..                  ...+++++|.+|.++++|++|+.++++++.
T Consensus         4 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------------------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   65 (213)
T 1hh8_A            4 VEAISLWNEGVLAADKKDWKGALDAFSAVQDP------------------HSRICFNIGCMYTILKNMTEAEKAFTRSIN   65 (213)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSSSC------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHcCC------------------ChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567889999999999999999999998511                  123588999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----------------DVKLEYKTLKEKMKEYNKKEAKFY  540 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~----------------~~~~~l~~l~~~~~~~~~~~~~~~  540 (557)
                      ++|++..+++++|.+|..+|++++|++.|++++++.|++.                .+...+..+...+.+..+... .|
T Consensus        66 ~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~  144 (213)
T 1hh8_A           66 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEE-QL  144 (213)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHH-HH
T ss_pred             hCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHH-HH
Confidence            9999999999999999999999999999999999999876                788888888777766655543 45


Q ss_pred             HHHhh
Q 008689          541 GNMFA  545 (557)
Q Consensus       541 ~~mf~  545 (557)
                      .+.+.
T Consensus       145 ~~al~  149 (213)
T 1hh8_A          145 ALATS  149 (213)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            55443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.30  E-value=1.7e-11  Score=114.52  Aligned_cols=107  Identities=17%  Similarity=0.184  Sum_probs=91.1

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (557)
                      ..|..+++.|+|++|+..|++|+++.|.+.               .+++++|.+|..+|+|++|+.+|+++++++|++..
T Consensus        59 ~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~  123 (208)
T 3urz_A           59 ELALAYKKNRNYDKAYLFYKELLQKAPNNV---------------DCLEACAEMQVCRGQEKDALRMYEKILQLEADNLA  123 (208)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence            399999999999999999999999987654               34889999999999999999999999999999998


Q ss_pred             HHHHHHHHHHh-----------------------------------cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          484 ALYRRAQAYIQ-----------------------------------MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       484 a~~~~g~a~~~-----------------------------------lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      +++++|.+|..                                   +++|++|+.+|++|++++|++ .+...+.++.
T Consensus       124 a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-~~~~~l~~i~  200 (208)
T 3urz_A          124 ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-EAQKTLDKIL  200 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            88888777643                                   356889999999999999975 3445555553

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.30  E-value=1.5e-12  Score=115.20  Aligned_cols=97  Identities=12%  Similarity=0.001  Sum_probs=88.9

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      ..++++|.+++++|+|++|+..|++++.++|+++.+|+++|.+|..+|+|++|++.|++|++++|++..+...+..+...
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            34889999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 008689          529 MKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       529 ~~~~~~~~~~~~~~mf~~  546 (557)
                      +.+.++... .|.+....
T Consensus       117 lg~~~eA~~-~~~~al~l  133 (151)
T 3gyz_A          117 LKAPLKAKE-CFELVIQH  133 (151)
T ss_dssp             TTCHHHHHH-HHHHHHHH
T ss_pred             cCCHHHHHH-HHHHHHHh
Confidence            888777664 66666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.30  E-value=1.4e-11  Score=105.32  Aligned_cols=98  Identities=16%  Similarity=0.179  Sum_probs=88.6

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ....+.|+|.+|+++|+|++|+.+++++|+++|.++.+|+++|.+|..+|++++|+.+|++|++++|++..+...+..+.
T Consensus        12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~   91 (126)
T 4gco_A           12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence            34458899999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHHHHHHHHHhh
Q 008689          527 EKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       527 ~~~~~~~~~~~~~~~~mf~  545 (557)
                      ..+.+..+... .|++.+.
T Consensus        92 ~~~~~~~~A~~-~~~~al~  109 (126)
T 4gco_A           92 VAMREWSKAQR-AYEDALQ  109 (126)
T ss_dssp             HHTTCHHHHHH-HHHHHHH
T ss_pred             HHCCCHHHHHH-HHHHHHH
Confidence            88887776654 6666554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.29  E-value=2.6e-11  Score=114.42  Aligned_cols=118  Identities=15%  Similarity=0.103  Sum_probs=104.8

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+++.|+|++|+..|.+|++..|..               ..++.++|.+|.++++|++|+..++++++++|
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~---------------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p  107 (228)
T 4i17_A           43 VTAYNCGVCADNIKKYKEAADYFDIAIKKNYNL---------------ANAYIGKSAAYRDMKNNQEYIATLTEGIKAVP  107 (228)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSH---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcch---------------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            345668999999999999999999999876643               34488999999999999999999999999999


Q ss_pred             CCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHH
Q 008689          480 RNV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKEY  532 (557)
Q Consensus       480 ~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~~~~~~  532 (557)
                      ++.       .+|+++|.++..+|++++|++.|++|++++|+  +..+...+..+...+...
T Consensus       108 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          108 GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            998       77999999999999999999999999999999  888888888776655444

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.28  E-value=3e-11  Score=109.27  Aligned_cols=113  Identities=15%  Similarity=0.130  Sum_probs=100.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHH-HHhhhCH--HHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC-KLKLKDY--KQAEKLCTKVL  475 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~-~~k~~~~--~~A~~~~~~al  475 (557)
                      +..+...|..++..|+|++|+..|.+|+.+.+.+.               .++.++|.+ |...+++  ++|+..+++++
T Consensus        44 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~l~~~~~~~~~~~A~~~~~~al  108 (177)
T 2e2e_A           44 SEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA---------------ELYAALATVLYYQASQHMTAQTRAMIDKAL  108 (177)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH---------------HHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH---------------HHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            46688899999999999999999999999887543               247899999 8899999  99999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ..+|++..+++.+|.+|..+|++++|+..|+++++++|++......+..+.
T Consensus       109 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~  159 (177)
T 2e2e_A          109 ALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESIN  159 (177)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHH
Confidence            999999999999999999999999999999999999999865555444443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.28  E-value=8.8e-12  Score=102.58  Aligned_cols=101  Identities=18%  Similarity=0.173  Sum_probs=92.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..++..|+|.+|+..|.++++..+...               .++.++|.++..+++|++|+.+++++++.+|
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~   71 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES---------------KYWLMKGKALYNLERYEEAVDCYNYVINVIE   71 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCc
Confidence            4567789999999999999999999999866432               2478999999999999999999999999999


Q ss_pred             C--ChHHHHHHHHHHHhc-CCHHHHHHHHHHHHHhCCCC
Q 008689          480 R--NVKALYRRAQAYIQM-ADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       480 ~--~~ka~~~~g~a~~~l-g~~~~A~~~~~~al~l~p~n  515 (557)
                      .  +..+++++|.++..+ |++++|++.|++++...|.+
T Consensus        72 ~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           72 DEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             CTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             ccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            9  999999999999999 99999999999999999976

>3cgm_A SLYD, peptidyl-prolyl CIS-trans isomerase; chaperone function, two domain P rotamase; 2.41A {Thermus thermophilus} PDB: 3cgn_A 3luo_A*

Probab=99.27  E-value=5.5e-12  Score=111.18  Aligned_cols=78  Identities=15%  Similarity=0.287  Sum_probs=70.9

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeeccceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCCCC
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPN  248 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip~~  248 (557)
                      ++.|+.|+++|+++ .+|++|+++. +.|.+|.+++++||+++|.+|++|+++.+.|||+.|||+.             +
T Consensus         3 i~~gd~V~v~Y~g~-~dG~~fdss~-~~f~~G~g~vipG~e~aL~Gm~~Ge~~~v~ipp~~aYG~~-------------~   67 (158)
T 3cgm_A            3 VGQDKVVTIRYTLQ-VEGEVLDQGE-LSYLHGHRNLIPGLEEALEGREEGEAFQAHVPAEKAYGPH-------------D   67 (158)
T ss_dssp             CCTTEEEEEEEEEE-ETTEEEEEEE-EEEETTSSSSCHHHHHHHTTCBTTCEEEEEECGGGTTCCC-------------C
T ss_pred             CCCCCEEEEEEEEE-ECCEEEEeeE-EEEEECCCCcChHHHHHHcCCCCCCEEEEEECcHHHcCCC-------------C
Confidence            56789999999999 8999999888 9999999999999999999999999999999999999965             4


Q ss_pred             CeEEEEEEeeccc
Q 008689          249 ATLQIALELVSWK  261 (557)
Q Consensus       249 ~~l~~~v~l~~~~  261 (557)
                      ..+++.|.+..|.
T Consensus        68 ~~lv~~v~~~~f~   80 (158)
T 3cgm_A           68 PEGVQVVPLSAFP   80 (158)
T ss_dssp             GGGEEEEEGGGSC
T ss_pred             cceEEEEEHHHCC
Confidence            4678888888884

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=99.27  E-value=5.6e-12  Score=130.32  Aligned_cols=100  Identities=25%  Similarity=0.446  Sum_probs=88.3

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008689           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (557)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~  130 (557)
                      ..+..||.|++||+++. ||+.|++++  +.|+.|.+|.|+++|||+++|.||++|++++|.+|++.+||..+.     +
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l-----a  227 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGK--ASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K  227 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCC--CSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT-----S
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCC--ccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC-----C
Confidence            56899999999999995 999999987  479999999999999999999999999999999999999998764     4


Q ss_pred             CCcEEEEEEEEEeeeccccccccceeee
Q 008689          131 NATLQFDVELLSWTSVKDICKDGGIIKK  158 (557)
Q Consensus       131 ~~~l~~~v~l~~~~~~~d~~~d~~~~~~  158 (557)
                      +.+++|+|+|+++........|+.+.+.
T Consensus       228 g~~~~F~V~v~~v~~~~lpeldDEfak~  255 (432)
T 1w26_A          228 GKAAKFAINLKKVEERELPELTAEFIKR  255 (432)
T ss_dssp             SCEEEEEEECCEECCEECCCCSHHHHTT
T ss_pred             CceEEEEEEEEEEeccCCCCcchHHHHH
Confidence            5899999999999876556566666653

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.26  E-value=8.6e-11  Score=117.74  Aligned_cols=124  Identities=24%  Similarity=0.344  Sum_probs=110.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      .......|..+++.|+|++|+..|.+++...+.+.           .....++.++|.+|.+++++++|+..++++++.+
T Consensus       234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          234 LNKLIESAEELIRDGRYTDATSKYESVMKTEPSVA-----------EYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-----------HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            33455679999999999999999999999876432           2344557899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                      |++..+++++|.+|..+|++++|++.|+++++++|++..+...+.++...+++.+
T Consensus       303 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~  357 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQSQ  357 (359)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999999999999988776543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.24  E-value=1e-10  Score=99.12  Aligned_cols=129  Identities=27%  Similarity=0.380  Sum_probs=109.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .+...|..++..|++++|+..|.+++...+..               ..++.++|.++...+++++|+..+++++..+|.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~   67 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRS---------------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR   67 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcc---------------hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence            46678999999999999999999999875532               124778999999999999999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +..+++.+|.++..+|++++|++.|++++++.|.+..+...+..+.....+.++.. ..|.+++.
T Consensus        68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~  131 (136)
T 2fo7_A           68 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAI-EYYQKALE  131 (136)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HHHHHHHH
T ss_pred             chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHH-HHHHHHHc
Confidence            99999999999999999999999999999999999888888887776665555444 35555543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.23  E-value=5.2e-11  Score=113.62  Aligned_cols=113  Identities=25%  Similarity=0.316  Sum_probs=84.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|++++...+.+.               .++.++|.+|.++++|++|+.+++++++.
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~al~~  202 (258)
T 3uq3_A          138 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA---------------RGYSNRAAALAKLMSFPEAIADCNKAIEK  202 (258)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH---------------HHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            345566777777788888888888888877665432               23677788888888888888888888888


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEID------PDNRDVKLEYKTL  525 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~------p~n~~~~~~l~~l  525 (557)
                      +|++..+++++|.+|..+|++++|+..|+++++++      |++..+...+.++
T Consensus       203 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          203 DPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            88888888888888888888888888888888877      7776666666543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.23  E-value=5.6e-11  Score=128.58  Aligned_cols=133  Identities=7%  Similarity=0.016  Sum_probs=116.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..+++.|+|++|+..|++|+++.+.+.               .+++++|.+|..+++|++|+.++++++++
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~   86 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP---------------EAVARLGRVRWTQQRHAEAAVLLQQASDA   86 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            356788999999999999999999999999876543               34889999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhh
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM---KEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~---~~~~~~~~~~~~~mf~~  546 (557)
                      +|++..+++++|.+|..+|++++|++.|+++++++|++..+...+..+...+   .+.++.. ..|++.+..
T Consensus        87 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~-~~~~~al~~  157 (568)
T 2vsy_A           87 APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLS-AQVRAAVAQ  157 (568)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHH-HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHH-HHHHHHHhc
Confidence            9999999999999999999999999999999999999999999998888777   5555444 355555543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.22  E-value=5.8e-11  Score=114.65  Aligned_cols=109  Identities=18%  Similarity=0.234  Sum_probs=97.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|++|+..|.+++...|.+..            ...+++++|.||+++++|++|+..+++++...
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   82 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW------------AADAQFYLARAYYQNKEYLLAASEYERFIQIY   82 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc------------hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHC
Confidence            567889999999999999999999999998765431            24458899999999999999999999999998


Q ss_pred             CCC---hHHHHHHHHHHHh--------cCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689          479 SRN---VKALYRRAQAYIQ--------MADLDLAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       479 p~~---~ka~~~~g~a~~~--------lg~~~~A~~~~~~al~l~p~n~~~~  519 (557)
                      |++   ..++|++|.+|..        +|++++|+..|+++++++|++..+.
T Consensus        83 p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           83 QIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             CCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            855   6799999999999        9999999999999999999986555

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.21  E-value=2.2e-10  Score=103.05  Aligned_cols=132  Identities=17%  Similarity=0.152  Sum_probs=112.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ...+...|..++..|++++|+..|.+++...+...               .++.++|.++...+++++|+.++++++..+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~  106 (186)
T 3as5_A           42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV---------------KVATVLGLTYVQVQKYDLAVPLLIKVAEAN  106 (186)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            34567888999999999999999999998865332               347899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      |.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+.+..+.. ..|++++..
T Consensus       107 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~-~~~~~~~~~  173 (186)
T 3as5_A          107 PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL-PHFKKANEL  173 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH-HHHHHHHHH
T ss_pred             cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH-HHHHHHHHc
Confidence            9999999999999999999999999999999999999988888888877776655544 355555543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.21  E-value=2.6e-10  Score=110.02  Aligned_cols=114  Identities=19%  Similarity=0.055  Sum_probs=102.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..++..|+|++|+..|.+|+...+...               .++.++|.+|..+++|++|+.++++++.
T Consensus        41 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~---------------~~~~~la~~~~~~~~~~~A~~~~~~al~  105 (275)
T 1xnf_A           41 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE  105 (275)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            4577788999999999999999999999999866432               3488999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ++|.+..+++.+|.+|..+|++++|+..|+++++++|++......+..+
T Consensus       106 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          106 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999999999999999999999997555544433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.20  E-value=3.7e-10  Score=108.92  Aligned_cols=119  Identities=16%  Similarity=0.190  Sum_probs=103.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh--------hhCHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK--------LKDYKQAEKL  470 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k--------~~~~~~A~~~  470 (557)
                      ...+...|..+++.|+|.+|+..|+++++..|.+..            ...+++++|.||++        ++++++|+..
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~  119 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPR------------VPQAEYERAMCYYKLSPPYELDQTDTRKAIEA  119 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT------------HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCch------------hHHHHHHHHHHHHHhcccccccchhHHHHHHH
Confidence            566789999999999999999999999999875542            23458899999999        9999999999


Q ss_pred             HHHHHccCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHH
Q 008689          471 CTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKTLKEKM  529 (557)
Q Consensus       471 ~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~~l~~~~  529 (557)
                      +++++..+|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++   ..+...+..+...+
T Consensus       120 ~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          120 FQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             HHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            999999999986666                 999999999999999999999999999985   45666677666655

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.19  E-value=2.2e-10  Score=109.21  Aligned_cols=146  Identities=18%  Similarity=0.173  Sum_probs=117.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-----------HHHHHHHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-----------EEKKQAKALKVACNLNNAACKLKLKDYKQA  467 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~-----------~~~~~~~~~~~~~~~nla~~~~k~~~~~~A  467 (557)
                      +..+...|..+++.|+|++|+..|.+++.+.+.......           +...........++.++|.++..+++|++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            677889999999999999999999999996543110000           000011223456788999999999999999


Q ss_pred             HHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          468 EKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       468 ~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +.++++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+...+.+.++... .|++.+.
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~a~~  235 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALE-TLDAART  235 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988888888777766655443 5555444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.19  E-value=1.1e-10  Score=123.54  Aligned_cols=130  Identities=15%  Similarity=-0.005  Sum_probs=114.9

Q ss_pred             HhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          399 AGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      +..+...|..++..++| ++|+..|++|+++.+...               .+++++|.+|.++++|++|+.+|++++++
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~~  166 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELV---------------EAWNQLGEVYWKKGDVTSAHTCFSGALTH  166 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56788999999999999 999999999999877543               34889999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH--------HHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQM---------ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM--------KEYNKKEAKFY  540 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~l---------g~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~--------~~~~~~~~~~~  540 (557)
                      +|+ ..+++++|.+|..+         |++++|++.|++|++++|++..++..+..+...+        .+.++... .|
T Consensus       167 ~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~-~~  244 (474)
T 4abn_A          167 CKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALS-AY  244 (474)
T ss_dssp             CCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH-HH
T ss_pred             CCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHH-HH
Confidence            999 79999999999999         9999999999999999999999999999988777        66655543 55


Q ss_pred             HHHhh
Q 008689          541 GNMFA  545 (557)
Q Consensus       541 ~~mf~  545 (557)
                      .+...
T Consensus       245 ~~al~  249 (474)
T 4abn_A          245 AQAEK  249 (474)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.18  E-value=2.6e-11  Score=106.86  Aligned_cols=97  Identities=12%  Similarity=0.002  Sum_probs=85.8

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      ..++++|.+++..|+|++|+..+++++.++|++..+|+.+|.+|..+|+|++|++.|++|++++|++..+...+..+...
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHHHHHHHHHHhhh
Q 008689          529 MKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       529 ~~~~~~~~~~~~~~mf~~  546 (557)
                      +.+..+... .|.+....
T Consensus       102 ~g~~~~A~~-~~~~al~~  118 (148)
T 2vgx_A          102 XGELAEAES-GLFLAQEL  118 (148)
T ss_dssp             TTCHHHHHH-HHHHHHHH
T ss_pred             cCCHHHHHH-HHHHHHHH
Confidence            776666553 55555443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.18  E-value=9.4e-11  Score=109.04  Aligned_cols=103  Identities=16%  Similarity=0.104  Sum_probs=94.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|++|+..|.+|+...+...               .+++++|.+|.++++|++|+.++++++.+.
T Consensus        37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~  101 (213)
T 1hh8_A           37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQL  101 (213)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch---------------HHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            45788999999999999999999999999876432               348899999999999999999999999988


Q ss_pred             CCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          479 SRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       479 p~~~----------------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      |.+.                .+++++|.+|..+|++++|++.|+++++++|++.
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          102 RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence            8877                9999999999999999999999999999999873

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.18  E-value=1.1e-10  Score=123.50  Aligned_cols=121  Identities=16%  Similarity=0.031  Sum_probs=109.4

Q ss_pred             hhhHHHHHHHHHc---------CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--------h
Q 008689          400 GKKKEQGNTLFKA---------GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--------K  462 (557)
Q Consensus       400 ~~~k~~G~~~~~~---------~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--------~  462 (557)
                      ..+...|..++..         |+|++|+..|++|+++.+.+.               .+++++|.+|..+        +
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~~~~g  235 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG---------------RSWYILGNAYLSLYFNTGQNPK  235 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHHHHTTCCHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHHHHhhccccc
Confidence            5567888889998         999999999999999877543               2488999999999        9


Q ss_pred             CHHHHHHHHHHHHccCC---CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          463 DYKQAEKLCTKVLDLDS---RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       463 ~~~~A~~~~~~al~~~p---~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      +|++|+.+++++++++|   +++.+|+++|.+|..+|+|++|++.|++|++++|++..+...+..+...+.+..+.
T Consensus       236 ~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          236 ISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999   99999999999999999999999999999999999999898888887777766554

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.18  E-value=3.8e-10  Score=106.57  Aligned_cols=110  Identities=13%  Similarity=0.129  Sum_probs=96.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|++|+..|++++...|.+..            ...+++++|.||+++++|++|+..++++++.+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~   71 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY------------SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN   71 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC
Confidence            456788999999999999999999999998775432            23358899999999999999999999999999


Q ss_pred             CCChH---HHHHHHHHHHh------------------cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689          479 SRNVK---ALYRRAQAYIQ------------------MADLDLAEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       479 p~~~k---a~~~~g~a~~~------------------lg~~~~A~~~~~~al~l~p~n~~~~~  520 (557)
                      |++..   |+|++|.++..                  +|++++|+..|+++++.+|++..+..
T Consensus        72 P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~  134 (225)
T 2yhc_A           72 PTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTD  134 (225)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHH
T ss_pred             cCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence            99975   89999999987                  57899999999999999999975443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.18  E-value=1.7e-10  Score=111.41  Aligned_cols=114  Identities=15%  Similarity=0.063  Sum_probs=72.5

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      +...|..++..|+|++|+..|.+++. .+.+...           ...++.++|.+|..++++++|+.+++++++++|.+
T Consensus        40 ~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~  107 (272)
T 3u4t_A           40 YNRRAVCYYELAKYDLAQKDIETYFS-KVNATKA-----------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTR  107 (272)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTTC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchhH-----------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCccc
Confidence            34444444455555555555555444 2211111           23346677777777777777777777777777777


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHH
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK-TLKE  527 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~-~l~~  527 (557)
                      ..+++.+|.+|..+|++++|++.|+++++++|++..+...+. .+..
T Consensus       108 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A          108 LDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777776666666 4433

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.17  E-value=8.1e-12  Score=103.15  Aligned_cols=94  Identities=29%  Similarity=0.418  Sum_probs=73.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..++..|+|++|+..|.+|++..+.+.               .+++|+|.||.++++|++|+.+|++++.++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~   68 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP---------------VGYSNKAMALIKLGEYTQAIQMCQQGLRYT   68 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence            55677788888888888888888888888766432               237788888888888888888888888888


Q ss_pred             CCC------hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008689          479 SRN------VKALYRRAQAYIQMADLDLAEFDIKK  507 (557)
Q Consensus       479 p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~  507 (557)
                      |++      .++++++|.++..+|++++|+..|++
T Consensus        69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence            887      88888888888888877777666543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.17  E-value=7.1e-11  Score=119.39  Aligned_cols=131  Identities=12%  Similarity=0.088  Sum_probs=106.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|++|+..|++++...+...               .+++++|.+|.+++++++|+..+++++.++
T Consensus       217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  281 (368)
T 1fch_A          217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQ  281 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            45567788889999999999999999998765432               347889999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----------RDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      |++..+++++|.+|..+|++++|+..|+++++++|++           ..+...+..+...+.+.++... .+++.+.
T Consensus       282 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~  358 (368)
T 1fch_A          282 PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA-ADARDLS  358 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH-HHTTCHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH-hHHHHHH
Confidence            9999999999999999999999999999999999888           7788888888777766555443 4443333

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.16  E-value=1.9e-10  Score=103.47  Aligned_cols=132  Identities=20%  Similarity=0.233  Sum_probs=113.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|++++|+..|.+++...+..               ..++.++|.++..++++++|+..+++++..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~   71 (186)
T 3as5_A            7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD---------------VDVALHLGIAYVKTGAVDRGTELLERSLAD   71 (186)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccC---------------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            46678889999999999999999999998765532               234789999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +|.+..+++.+|.++..+|++++|++.|+++++++|++..+...+..+...+.+..+... .|.+++.
T Consensus        72 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~-~~~~~~~  138 (186)
T 3as5_A           72 APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAID-SFKIALG  138 (186)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHH-HHHHHHh
Confidence            999999999999999999999999999999999999999888888887776665555443 4555444

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.16  E-value=1.3e-10  Score=117.78  Aligned_cols=123  Identities=13%  Similarity=0.125  Sum_probs=100.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..++..|+|++|+..|+++++..+.+.               .+++++|.+|.++++|++|+.+++++++++
T Consensus       213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  277 (365)
T 4eqf_A          213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY---------------SLWNRLGATLANGDRSEEAVEAYTRALEIQ  277 (365)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            34567788889999999999999999998866432               247899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------------RDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------------~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      |++..+++++|.+|..+|++++|+..|+++++++|++            ..+...+..+...+.+.+..+
T Consensus       278 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  347 (365)
T 4eqf_A          278 PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQ  347 (365)
T ss_dssp             TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHH
Confidence            9999999999999999999999999999999998873            456666777666665554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.15  E-value=2.7e-10  Score=112.24  Aligned_cols=112  Identities=24%  Similarity=0.263  Sum_probs=91.7

Q ss_pred             HHhhhHHHHHHHHHc-CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          398 AAGKKKEQGNTLFKA-GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~-~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      .+..+.+.|..+... |+|++|+.+|++|+++.+.....         .....++.|+|.+|.++|+|++|+.++++++.
T Consensus       116 ~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          116 GANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            356788999999996 99999999999999998754321         12345688999999999999999999999999


Q ss_pred             cCCCChH-------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689          477 LDSRNVK-------ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (557)
Q Consensus       477 ~~p~~~k-------a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~  518 (557)
                      +.|++..       +++++|.+|..+|++++|+..|+++++++|+....
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            9887643       78999999999999999999999999999987643

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=99.15  E-value=1.7e-11  Score=124.97  Aligned_cols=137  Identities=19%  Similarity=0.367  Sum_probs=101.8

Q ss_pred             CCCCCCcCCCCCCCCcCccCcceee------e-cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCC
Q 008689            9 AANEMDADMDLPDDAPMMKVGEEKE------I-GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRST   81 (557)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~   81 (557)
                      +...++++.-++..-|...|.++.+      + ...+.+    .. .+ ..+..||.|+|||+++. ||+.|+++.  +.
T Consensus       116 Pev~l~~y~~l~v~~~~~~Vtde~Vd~~l~~l~~~~a~~----~~-~~-~~~~~gD~V~i~y~g~~-dG~~fd~~~--~~  186 (392)
T 1t11_A          116 PEVELKGLENIAVEKPAAEVTDADVAEMLETLRKQQATW----KE-VD-EAAENGKRVSIDFVGSI-DGVEFEGGK--AE  186 (392)
T ss_dssp             CCCCCTTCTTCEEESSCC---CTHHHHHHHHHHHHHCEE----EE-CS-CCCCTTCEEEEEEEEES-SSSCCTTCE--EE
T ss_pred             CceecCCCCceEEEeCCCCcCHHHHHHHHHHHHHhcCee----ee-cC-CCCCCCCEEEEEEEEEE-CCEEccCCC--cc
Confidence            3345666655555555555555432      1 111222    21 13 46899999999999995 999999884  47


Q ss_pred             ceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccccccccceeeee
Q 008689           82 PFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIKKI  159 (557)
Q Consensus        82 p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~d~~~~~~i  159 (557)
                      |+.|.+|.|+++|||+++|.||++|++++|.|+++..||..+.     ++.++.|+|+|+++........|..+++.+
T Consensus       187 ~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~l-----aGk~~~F~V~v~~i~~~~lpeldDEfak~~  259 (392)
T 1t11_A          187 NFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----KGKAAKFAIKVNKVEARELPELNDEFVARF  259 (392)
T ss_dssp             EEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----SSCEEEECCCEEEEEEEECCCCSTGGGGGG
T ss_pred             ceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCCC-----CCCeEEEEEEEEEEEcCCCCCcCHHHHHHh
Confidence            9999999999999999999999999999999997788987654     569999999999999876666677777543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=2.9e-11  Score=133.76  Aligned_cols=74  Identities=15%  Similarity=0.039  Sum_probs=49.1

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ++|+|.+|.++|+|++ +.+|++|++++|++..+++++|.+|..+|++++|+++|++|++++|++..++..+..+
T Consensus       504 ~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~  577 (681)
T 2pzi_A          504 KLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT  577 (681)
T ss_dssp             HHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence            5566666666666666 6666666666666666666666666666666666666666666666666555555544

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.15  E-value=2.4e-11  Score=109.91  Aligned_cols=130  Identities=12%  Similarity=0.083  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      +...++.++..++|++|+..|.+++...+.+.               .++.++|.+|..+++|++|+.++.+++.++|++
T Consensus        13 ~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   77 (177)
T 2e2e_A           13 QRDPLHQFASQQNPEAQLQALQDKIRANPQNS---------------EQWALLGEYYLWQNDYSNSLLAYRQALQLRGEN   77 (177)
T ss_dssp             SSTTTCCCC-----CCCCHHHHHHHHHCCSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred             HhhhhhhhhhccCHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence            44456667889999999999999999876443               248899999999999999999999999999999


Q ss_pred             hHHHHHHHHH-HHhcCCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          482 VKALYRRAQA-YIQMADL--DLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       482 ~ka~~~~g~a-~~~lg~~--~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      ..+++++|.+ +...|++  ++|+..|+++++++|++..+...+..+...+.+..+... .|.+++...
T Consensus        78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~~  145 (177)
T 2e2e_A           78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIE-LWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHTC
T ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHH-HHHHHHhhC
Confidence            9999999999 8899999  999999999999999999999999888877776666553 666666543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.15  E-value=5.3e-11  Score=131.64  Aligned_cols=121  Identities=13%  Similarity=0.072  Sum_probs=110.7

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+++.|+|++|+..|++|++..+.+..               +++++|.+|+++++|++|+.++++|++++|
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  498 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR---------------LVWYRAVAELLTGDYDSATKHFTEVLDTFP  498 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            45778899999999999999999999999876543               488999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      ++..+++++|.+|..+|+|++ ++.|++|++++|++..+...+..+...+.+.++..
T Consensus       499 ~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~  554 (681)
T 2pzi_A          499 GELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAV  554 (681)
T ss_dssp             TCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999999999 99999999999999999999998887777666544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.15  E-value=4.9e-10  Score=105.94  Aligned_cols=133  Identities=17%  Similarity=0.077  Sum_probs=66.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-HHHHH------HHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-KKQAK------ALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~-~~~~~------~~~~~~~~nla~~~~  459 (557)
                      +..+...|..++..|++++|+..|.+++...+.....            ..++ ....+      .....++.++|.++.
T Consensus        57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~  136 (243)
T 2q7f_A           57 AIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLV  136 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3445566666777777777777777776654432110            0000 00000      001123445555555


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      +++++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+...+.+
T Consensus       137 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  208 (243)
T 2q7f_A          137 KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN  208 (243)
T ss_dssp             HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC
Confidence            555555555555555555555555555555555555555555555555555555555554444444444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.14  E-value=2.6e-10  Score=97.42  Aligned_cols=97  Identities=15%  Similarity=0.219  Sum_probs=77.5

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH-------HH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD-------VK  519 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~-------~~  519 (557)
                      ....+.|+|.+++++++|++|+.+|++||+++|+++.+|+++|.+|..+|+|++|+++|++|++++|++..       +.
T Consensus         7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            34457799999999999999999999999999999999999999999999999999999999999987743       33


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          520 LEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       520 ~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      ..++.+...+...++.. ..|++.+
T Consensus        87 ~~lg~~~~~~~~~~~A~-~~~~kal  110 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAV-QWFHRSL  110 (127)
T ss_dssp             HHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHH-HHHHHHH
Confidence            34444544444444433 2444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.14  E-value=4.7e-10  Score=110.50  Aligned_cols=112  Identities=15%  Similarity=0.048  Sum_probs=96.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-hCHHHHHHHHHHHH
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-KDYKQAEKLCTKVL  475 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~~~~~A~~~~~~al  475 (557)
                      ..+..+.+.|+.+.+.|+|++|+.+|.+|+.+.+.....         .....++.|+|.+|..+ ++|++|+.++++++
T Consensus        75 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           75 EAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQF---------RRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            347788899999999999999999999999987654321         22355688999999996 99999999999999


Q ss_pred             ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      .+.|.+      ..++.++|.+|..+|+|++|+..|++++++.|++..
T Consensus       146 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence            988754      578999999999999999999999999999998753

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.14  E-value=8.1e-10  Score=114.94  Aligned_cols=121  Identities=25%  Similarity=0.355  Sum_probs=107.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+++.|+|++|+..|.+++...+.+.           .....++.++|.++.+++++++|+..|++++.++|
T Consensus       258 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p  326 (450)
T 2y4t_A          258 NKLIESAEELIRDGRYTDATSKYESVMKTEPSIA-----------EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP  326 (450)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSH-----------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcch-----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence            3445669999999999999999999999766422           22345688999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      ++..+|+.+|.+|..+|++++|+..|+++++++|++..+...+..+...++.
T Consensus       327 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          327 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhc
Confidence            9999999999999999999999999999999999999999988887666544

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.13  E-value=3.4e-10  Score=107.03  Aligned_cols=80  Identities=19%  Similarity=0.194  Sum_probs=72.8

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ..++.++|.++.+++++++|+..+++++..+|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+..
T Consensus       159 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          159 TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC---
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHh
Confidence            34588999999999999999999999999999999999999999999999999999999999999999988887776644

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.13  E-value=2.7e-10  Score=95.14  Aligned_cols=100  Identities=12%  Similarity=0.070  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC
Q 008689          417 RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA  496 (557)
Q Consensus       417 ~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg  496 (557)
                      .|+..|.+++...+.+.               .+++++|.+|+.+++|++|+.++++++.++|++..+++.+|.+|..+|
T Consensus         3 ~a~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g   67 (115)
T 2kat_A            3 AITERLEAMLAQGTDNM---------------LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG   67 (115)
T ss_dssp             CHHHHHHHHHTTTCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence            57889999998776443               248899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHH
Q 008689          497 DLDLAEFDIKKALEIDPD--NRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       497 ~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~~~~~  531 (557)
                      ++++|+..|+++++++|+  +......+..+...+.+
T Consensus        68 ~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l~~l~~  104 (115)
T 2kat_A           68 DRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAR  104 (115)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHhcc
Confidence            999999999999999885  44444555444444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.13  E-value=8.2e-10  Score=93.46  Aligned_cols=94  Identities=15%  Similarity=0.099  Sum_probs=85.7

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      ++++|.++++.++|++|+..++++++.+|++..+|+.+|.++..+|++++|+..|++|++++|++..+...+..+...+.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g   99 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   99 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999988887


Q ss_pred             HHHHHHHHHHHHHhh
Q 008689          531 EYNKKEAKFYGNMFA  545 (557)
Q Consensus       531 ~~~~~~~~~~~~mf~  545 (557)
                      +..+... .|.+.+.
T Consensus       100 ~~~~A~~-~~~~al~  113 (121)
T 1hxi_A          100 NANAALA-SLRAWLL  113 (121)
T ss_dssp             HHHHHHH-HHHHHHC
T ss_pred             CHHHHHH-HHHHHHH
Confidence            7776653 5665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.12  E-value=6.3e-10  Score=94.35  Aligned_cols=97  Identities=19%  Similarity=0.162  Sum_probs=85.7

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ...+.++|.++++.++|++|+..+++++.++|++..+++++|.+|..+|+|++|+.+|+++++++|++..+...+..+..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008689          528 KMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       528 ~~~~~~~~~~~~~~~mf~  545 (557)
                      .+.+..+... .|.+.+.
T Consensus        84 ~~~~~~~A~~-~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALE-TLDAART  100 (126)
T ss_dssp             HTTCHHHHHH-HHHHHHH
T ss_pred             HHhCHHHHHH-HHHHHHH
Confidence            7776665543 4554443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.12  E-value=2.2e-10  Score=103.72  Aligned_cols=83  Identities=14%  Similarity=0.071  Sum_probs=65.0

Q ss_pred             CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          463 DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEYKTLKEKMKEYNKKEAKFY  540 (557)
Q Consensus       463 ~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n--~~~~~~l~~l~~~~~~~~~~~~~~~  540 (557)
                      ....|+..++++++.+|++..+++.+|.++..+|++++|+..|+++++++|+.  ..+...+..+...+.+..+.. ..|
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~-~~y  167 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA-SKY  167 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH-HHH
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH-HHH
Confidence            33446777788888899999999999999999999999999999999999975  457778887777665554443 366


Q ss_pred             HHHhhh
Q 008689          541 GNMFAK  546 (557)
Q Consensus       541 ~~mf~~  546 (557)
                      ++.+..
T Consensus       168 ~~al~~  173 (176)
T 2r5s_A          168 RRQLYS  173 (176)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.12  E-value=2.1e-10  Score=116.16  Aligned_cols=130  Identities=9%  Similarity=0.014  Sum_probs=107.0

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (557)
                      ..|..+.+.|++++|+..|.+++...+....             ..+++++|.+|.++++|++|+..+++++.++|++..
T Consensus       182 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~  248 (365)
T 4eqf_A          182 RMSKSPVDSSVLEGVKELYLEAAHQNGDMID-------------PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS  248 (365)
T ss_dssp             -------CCHHHHHHHHHHHHHHHHSCSSCC-------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHhCcCccC-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence            3488899999999999999999998765211             234789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      +++++|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+... .|++++...
T Consensus       249 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~al~~~  311 (365)
T 4eqf_A          249 LWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS-NFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH-HHHHHHHhC
Confidence            999999999999999999999999999999999999999888887776665543 566555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.12  E-value=7.1e-10  Score=105.77  Aligned_cols=96  Identities=14%  Similarity=0.014  Sum_probs=59.4

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      .++.++|.+|.+++++++|+.++++++..+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus       142 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (252)
T 2ho1_A          142 RVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKV  221 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            34556666666666666666666666666666666666666666666666666666666666666666665555555554


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 008689          529 MKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       529 ~~~~~~~~~~~~~~mf~  545 (557)
                      +.+.++.. ..++++..
T Consensus       222 ~g~~~~A~-~~~~~~~~  237 (252)
T 2ho1_A          222 FEDRDTAA-SYGLQLKR  237 (252)
T ss_dssp             TTCHHHHH-HHHHHHHH
T ss_pred             ccCHHHHH-HHHHHHHH
Confidence            44444333 24444433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.11  E-value=4.3e-10  Score=112.60  Aligned_cols=110  Identities=26%  Similarity=0.284  Sum_probs=100.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..++..|+|++|+..|.+++...|.+.               .++.++|.|+..+++|++|+..+++++..+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~   67 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY---------------IAYYRRATVFLAMGKSKAALPDLTKVIALK   67 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH---------------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999876543               348899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP---DNRDVKLEYK  523 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p---~n~~~~~~l~  523 (557)
                      |++..+++.+|.+|..+|++++|+..|+++++++|   ++..+...+.
T Consensus        68 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           68 MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            99999999999999999999999999999999999   8877776664

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.11  E-value=8.9e-10  Score=102.57  Aligned_cols=97  Identities=13%  Similarity=0.070  Sum_probs=76.2

Q ss_pred             HHHhhHHHHHHhh-hCHHHHHHHHHHHHc--cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKL-KDYKQAEKLCTKVLD--LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       449 ~~~~nla~~~~k~-~~~~~A~~~~~~al~--~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      .++.++|.+|..+ +++++|+..+++++.  .+|.+..+++.+|.++..+|++++|+..|+++++++|++..+...+..+
T Consensus        77 ~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~  156 (225)
T 2vq2_A           77 EINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELART  156 (225)
T ss_dssp             HHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHH
Confidence            3477888888888 888888888888888  6666688888888888888888888888888888888888888888777


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 008689          526 KEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       526 ~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      ...+.+.++... .|.+++..
T Consensus       157 ~~~~~~~~~A~~-~~~~~~~~  176 (225)
T 2vq2_A          157 KMLAGQLGDADY-YFKKYQSR  176 (225)
T ss_dssp             HHHHTCHHHHHH-HHHHHHHH
T ss_pred             HHHcCCHHHHHH-HHHHHHHh
Confidence            776666655443 55555543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.11  E-value=1.1e-09  Score=101.89  Aligned_cols=87  Identities=18%  Similarity=0.133  Sum_probs=75.9

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP-DNRDVKLEYKTLK  526 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p-~n~~~~~~l~~l~  526 (557)
                      ..++.++|.++.+++++++|+..+++++..+|.+..+++.+|.++..+|++++|+..|+++++++| .+......+..+.
T Consensus       113 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (225)
T 2vq2_A          113 YIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIA  192 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            356889999999999999999999999999999999999999999999999999999999999999 8888776666665


Q ss_pred             HHHHHHHH
Q 008689          527 EKMKEYNK  534 (557)
Q Consensus       527 ~~~~~~~~  534 (557)
                      ......+.
T Consensus       193 ~~~~~~~~  200 (225)
T 2vq2_A          193 KALGNAQA  200 (225)
T ss_dssp             HHTTCHHH
T ss_pred             HhcCcHHH
Confidence            55544443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.10  E-value=4.1e-10  Score=119.05  Aligned_cols=106  Identities=30%  Similarity=0.320  Sum_probs=98.6

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      +.+.+..+...|+.+++.|+|.+|+..|++++...|+                ..++.++|.||+++++|++|+.+|+++
T Consensus         2 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~----------------~~~~~~la~~~~~~g~~~~A~~~~~~a   65 (514)
T 2gw1_A            2 KDKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED----------------PVFYSNLSACYVSVGDLKKVVEMSTKA   65 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC----------------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc----------------HHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence            4567899999999999999999999999999998752                234889999999999999999999999


Q ss_pred             HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ++++|++..+++.+|.+|..+|++++|+..|+++++++|.+.
T Consensus        66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  107 (514)
T 2gw1_A           66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFND  107 (514)
T ss_dssp             HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCG
T ss_pred             hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCcc
Confidence            999999999999999999999999999999999999999764

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.10  E-value=9e-10  Score=108.53  Aligned_cols=112  Identities=17%  Similarity=0.075  Sum_probs=61.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH----HhhhCHHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKLKDYKQAEKLCTKV  474 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~k~~~~~~A~~~~~~a  474 (557)
                      ...+...|..+.+.|++++|+..|+++++..|...                 ..+++.++    ...+++++|+..++++
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~-----------------~~~l~~a~~~l~~~~~~~~eA~~~~~~~  192 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQDEDAT-----------------LTQLATAWVSLAAGGEKLQDAYYIFQEM  192 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----------------HHHHHHHHHHHHHCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcH-----------------HHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            34566778888888999999999999888754321                 11222111    1224455555555555


Q ss_pred             HccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          475 LDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      +..+|+++.+++.+|.+|..+|++++|++.|++|++++|++.++...+..+..
T Consensus       193 l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~  245 (291)
T 3mkr_A          193 ADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQ  245 (291)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555444444444333

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.10  E-value=4e-10  Score=110.80  Aligned_cols=130  Identities=12%  Similarity=0.084  Sum_probs=101.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH----------
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE----------  468 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~----------  468 (557)
                      ...+...|..+++.|++++|+..|++++...|.+...               ++++|.+++.+|++++|+          
T Consensus       117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a---------------~~~la~~~~~~g~~~~A~~~l~~~~~~~  181 (287)
T 3qou_A          117 EELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEI---------------GLLLAETLIALNRSEDAEAVLXTIPLQD  181 (287)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHH---------------HHHHHHHHHHTTCHHHHHHHHTTSCGGG
T ss_pred             hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhH---------------HHHHHHHHHHCCCHHHHHHHHHhCchhh
Confidence            4567889999999999999999999999998865422               556666666666666554          


Q ss_pred             ------------------------HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC--HHHHHHH
Q 008689          469 ------------------------KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN--RDVKLEY  522 (557)
Q Consensus       469 ------------------------~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n--~~~~~~l  522 (557)
                                              ..+++++..+|++..+++++|.+|..+|++++|++.|.++++++|++  ..++..+
T Consensus       182 p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l  261 (287)
T 3qou_A          182 QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTF  261 (287)
T ss_dssp             CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHH
Confidence                                    55555677789999999999999999999999999999999999998  6788888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 008689          523 KTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       523 ~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      ..+...+.+..+.. ..|++.+
T Consensus       262 ~~~~~~~g~~~~a~-~~~r~al  282 (287)
T 3qou_A          262 QEILAALGTGDALA-SXYRRQL  282 (287)
T ss_dssp             HHHHHHHCTTCHHH-HHHHHHH
T ss_pred             HHHHHHcCCCCcHH-HHHHHHH
Confidence            88877765544433 2444443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.09  E-value=1.9e-09  Score=101.64  Aligned_cols=135  Identities=11%  Similarity=0.039  Sum_probs=108.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh------------------h
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK------------------L  461 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k------------------~  461 (557)
                      ..+...|..+++.|+|++|+..|+++++..|.+...            ..+++++|.|+.+                  +
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  109 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI------------DYVMYMRGLTNMALDDSALQGFFGVDRSDRDP  109 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH------------HHHHHHHHHHHHHHHC--------------CC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH------------HHHHHHHHHHHHhhhhhhhhhhhccchhhcCc
Confidence            467788999999999999999999999998865531            1235566776665                  6


Q ss_pred             hCHHHHHHHHHHHHccCCCChHHH-----------------HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 008689          462 KDYKQAEKLCTKVLDLDSRNVKAL-----------------YRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLE  521 (557)
Q Consensus       462 ~~~~~A~~~~~~al~~~p~~~ka~-----------------~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~  521 (557)
                      +++++|+..++++++..|++..+.                 +.+|.+|..+|+|++|+..|+++++..|++.   .+...
T Consensus       110 ~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  189 (225)
T 2yhc_A          110 QQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPL  189 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHH
Confidence            799999999999999999997655                 6789999999999999999999999999987   45666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          522 YKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      +..+..++.+..+.. +.++++...-
T Consensus       190 l~~~~~~~g~~~~A~-~~~~~l~~~~  214 (225)
T 2yhc_A          190 MENAYRQMQMNAQAE-KVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHHCC
T ss_pred             HHHHHHHcCCcHHHH-HHHHHHHhhC
Confidence            677777776666654 3555555443

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.09  E-value=4.7e-10  Score=114.69  Aligned_cols=137  Identities=13%  Similarity=0.116  Sum_probs=84.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHHHH------HHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQAK------ALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~~~------~~~~~~~~nla~~~~  459 (557)
                      +..+...|..+++.|+|++|+..|+++++..|.....             .++-.....      .....++.++|.++.
T Consensus        67 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  146 (388)
T 1w3b_A           67 AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK  146 (388)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            4567888999999999999999999999876643211             000000000      001223456666666


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      .++++++|+..+.+++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+........+.
T Consensus       147 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A  222 (388)
T 1w3b_A          147 ALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRA  222 (388)
T ss_dssp             TTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHH
Confidence            6666666666666666666666666666666666666666666666666666666666666655555544444433

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.09  E-value=1.6e-10  Score=100.69  Aligned_cols=96  Identities=8%  Similarity=0.025  Sum_probs=85.3

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      ..++++|.++++.++|++|+..+++++..+|++..+|+.+|.+|..+|+|++|+..|++|+.++|++..+...+..+...
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34779999999999999999999999999999999999999999999999999999999999999999999999888887


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 008689          529 MKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       529 ~~~~~~~~~~~~~~mf~  545 (557)
                      +.+..+... .|.+.+.
T Consensus        99 ~g~~~~A~~-~~~~al~  114 (142)
T 2xcb_A           99 LGDLDGAES-GFYSARA  114 (142)
T ss_dssp             TTCHHHHHH-HHHHHHH
T ss_pred             cCCHHHHHH-HHHHHHH
Confidence            776666553 5555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.08  E-value=1.3e-09  Score=105.02  Aligned_cols=142  Identities=23%  Similarity=0.246  Sum_probs=115.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..++..|+|++|+..|.+|+.+........       ......++.++|.+|..+++|++|+.++.+++.
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  113 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE  113 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCc-------chHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            4567788999999999999999999999999864321100       123556789999999999999999999999998


Q ss_pred             c--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (557)
Q Consensus       477 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--------~p~n~~~~~~l~~l~~~~~~~~~~~~~~~  540 (557)
                      +        +|....+++++|.+|..+|++++|+..|++++++        +|....+...+..+...+.+.++... .|
T Consensus       114 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~  192 (283)
T 3edt_B          114 IREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAET-LY  192 (283)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-HH
T ss_pred             HHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-HH
Confidence            8        5777999999999999999999999999999999        66666777788888777766665543 55


Q ss_pred             HHHhhh
Q 008689          541 GNMFAK  546 (557)
Q Consensus       541 ~~mf~~  546 (557)
                      .+++..
T Consensus       193 ~~~l~~  198 (283)
T 3edt_B          193 KEILTR  198 (283)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.08  E-value=1.8e-09  Score=108.97  Aligned_cols=147  Identities=7%  Similarity=-0.005  Sum_probs=117.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------------------HHHHHH----------H
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------------------EEKKQA----------K  444 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~------------------------~~~~~~----------~  444 (557)
                      ...+...|..++..|++++|+..|.+++...+.......                        ....+.          .
T Consensus       132 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~  211 (368)
T 1fch_A          132 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD  211 (368)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC
Confidence            455677888888889999999999988887665432211                        000000          0


Q ss_pred             HH--HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          445 AL--KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       445 ~~--~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      ..  ...++.++|.+|.++++|++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+
T Consensus       212 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l  291 (368)
T 1fch_A          212 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNL  291 (368)
T ss_dssp             TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence            01  3567889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          523 KTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       523 ~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      ..+...+.+..+... .|.+++..
T Consensus       292 ~~~~~~~g~~~~A~~-~~~~al~~  314 (368)
T 1fch_A          292 GISCINLGAHREAVE-HFLEALNM  314 (368)
T ss_dssp             HHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHCCCHHHHHH-HHHHHHHh
Confidence            988888777666553 55555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.08  E-value=8.5e-10  Score=112.73  Aligned_cols=147  Identities=16%  Similarity=0.076  Sum_probs=105.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------ChHHHHH------HHHHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------GDEEKKQ------AKALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~~~~~~~------~~~~~~~~~~nla~~~~  459 (557)
                      +..+...|..+.+.|++.+|+..|++|+...|.....             .++-...      .......++.++|.+|.
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  248 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHH
Confidence            3456677888888888888888888888776543210             0110000      11112456778888888


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      +++++++|+..++++++++|+++.+++.+|.+|..+|++++|++.|+++++++|++..+...+..+.....+.++.. ..
T Consensus       249 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~-~~  327 (388)
T 1w3b_A          249 EQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV-RL  327 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH-HH
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH-HH
Confidence            88888888888888888888888888888888888888888888888888888888888877777776666555544 35


Q ss_pred             HHHHhhh
Q 008689          540 YGNMFAK  546 (557)
Q Consensus       540 ~~~mf~~  546 (557)
                      |.++...
T Consensus       328 ~~~al~~  334 (388)
T 1w3b_A          328 YRKALEV  334 (388)
T ss_dssp             HHHHTTS
T ss_pred             HHHHHhc
Confidence            6665543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.08  E-value=3.5e-10  Score=111.90  Aligned_cols=132  Identities=19%  Similarity=0.195  Sum_probs=112.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ...+...|..++..|++++|+..|.+++...+...               .++.++|.++..++++++|+..+++++..+
T Consensus       172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~  236 (327)
T 3cv0_A          172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA---------------QLWNKLGATLANGNRPQEALDAYNRALDIN  236 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            45577889999999999999999999998866432               347899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD------------NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~------------n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      |++..+++.+|.+|..+|++++|++.|+++++++|+            +..+...+..+...+.+.++... .+++.+..
T Consensus       237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~l~~  315 (327)
T 3cv0_A          237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVEL-TYAQNVEP  315 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHH-HTTCCSHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHh
Confidence            999999999999999999999999999999999999            67788888888777766655443 44444443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.08  E-value=1.1e-09  Score=104.40  Aligned_cols=131  Identities=18%  Similarity=0.151  Sum_probs=112.6

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc--
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--  476 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--  476 (557)
                      +..+...|..++..|++++|+..|.+++...+...               .++.++|.+|..++++++|+.++++++.  
T Consensus        71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~la~~~~~~g~~~~A~~~~~~~~~~~  135 (252)
T 2ho1_A           71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA---------------RVLNNYGGFLYEQKRYEEAYQRLLEASQDT  135 (252)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH---------------HHHHHHHHHHHHHhHHHHHHHHHHHHHhCc
Confidence            45677889999999999999999999999876543               2378999999999999999999999999  


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      .+|.+..+++.+|.+|..+|++++|++.|+++++++|.+..+...+..+...+.+.++... .|.+++.
T Consensus       136 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~~~~  203 (252)
T 2ho1_A          136 LYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQ-YYDLFAQ  203 (252)
T ss_dssp             TCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHT
T ss_pred             cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHH
Confidence            8899999999999999999999999999999999999999888888888777766655543 5555544

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=99.07  E-value=2.3e-09  Score=93.78  Aligned_cols=142  Identities=15%  Similarity=0.091  Sum_probs=108.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..++|++|+..|.+|+.+.+.....         .....++.++|.+|..+++|++|+.++++++
T Consensus         6 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~   76 (164)
T 3ro3_A            6 AAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERIAYSNLGNAYIFLGEFETASEYYKKTL   76 (164)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCc---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4567788999999999999999999999999988754321         3345678899999999999999999999999


Q ss_pred             ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (557)
Q Consensus       476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~~~~~~~~m  543 (557)
                      .+.+..      ..+++++|.+|..+|++++|++.+++++.+.+..      ..+...+..+...+.+..+.. ..+.+.
T Consensus        77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a  155 (164)
T 3ro3_A           77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKH  155 (164)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHH
T ss_pred             HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH-HHHHHH
Confidence            875443      6789999999999999999999999999874322      234445555555554444433 345554


Q ss_pred             hhhc
Q 008689          544 FAKM  547 (557)
Q Consensus       544 f~~~  547 (557)
                      +...
T Consensus       156 ~~~~  159 (164)
T 3ro3_A          156 LEIS  159 (164)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.07  E-value=1.3e-09  Score=105.11  Aligned_cols=118  Identities=18%  Similarity=0.132  Sum_probs=102.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..++..|+|++|+..|.++++..+....               ++.++|.+|.++++|++|+.++++++.++
T Consensus        74 ~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~al~~~  138 (272)
T 3u4t_A           74 SADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD---------------MYGQIGSYFYNKGNFPLAIQYMEKQIRPT  138 (272)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHGGGCCSS
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHhhcC
Confidence            445788999999999999999999999998776442               38899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      |.+..+++++|......+++++|++.|+++++++|++..+...+..+...+..
T Consensus       139 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~  191 (272)
T 3u4t_A          139 TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDP  191 (272)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHST
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCc
Confidence            99999999999444445599999999999999999998877777777665543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.06  E-value=5.2e-10  Score=119.16  Aligned_cols=116  Identities=25%  Similarity=0.358  Sum_probs=99.6

Q ss_pred             ccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (557)
Q Consensus       387 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (557)
                      ...++..++...+..+...|+.+++.|+|++|+..|++++...|.+.               .+++++|.||.++++|++
T Consensus        13 ~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~~~~~la~~~~~~g~~~~   77 (537)
T 3fp2_A           13 LKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEP---------------VFYSNISACYISTGDLEK   77 (537)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHH
T ss_pred             hcCCCcchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCc---------------HHHHHHHHHHHHcCCHHH
Confidence            44578888999999999999999999999999999999999877543               348899999999999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHH
Q 008689          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV  518 (557)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~  518 (557)
                      |+..|++++.++|++..+++++|.+|..+|++++|+..|+ ++.++|+....
T Consensus        78 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~~~  128 (537)
T 3fp2_A           78 VIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFDGA  128 (537)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC--------
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCChH
Confidence            9999999999999999999999999999999999999996 89999987543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.06  E-value=1.5e-09  Score=96.68  Aligned_cols=98  Identities=20%  Similarity=0.208  Sum_probs=87.4

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ...+.++|.++++.++|++|+.++++++.++|++..+|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            44588999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 008689          528 KMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       528 ~~~~~~~~~~~~~~~mf~~  546 (557)
                      .+.+..+... .|.+.+..
T Consensus        91 ~~g~~~~A~~-~~~~al~~  108 (164)
T 3sz7_A           91 DMADYKGAKE-AYEKGIEA  108 (164)
T ss_dssp             HTTCHHHHHH-HHHHHHHH
T ss_pred             HccCHHHHHH-HHHHHHHh
Confidence            8777666553 55555543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.06  E-value=8.8e-10  Score=96.89  Aligned_cols=97  Identities=14%  Similarity=0.181  Sum_probs=84.9

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-------ChH-----HHHHHHHHHHhcCCHHHHHHHHHHHHHh----
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-------NVK-----ALYRRAQAYIQMADLDLAEFDIKKALEI----  511 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-------~~k-----a~~~~g~a~~~lg~~~~A~~~~~~al~l----  511 (557)
                      ...+.|+|.+++++|+|++|+..|++||+++|+       +..     +|+++|.|+..+|+|++|+.+|++|+++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            344779999999999999999999999999999       544     9999999999999999999999999999    


Q ss_pred             ---CCCCHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          512 ---DPDNRDVK----LEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       512 ---~p~n~~~~----~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                         +|++..++    .....+...+.+.++... .|++.+.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~-~y~kAle  130 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVE  130 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHH-HHHHHHh
Confidence               99998888    888888888877777664 5655544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.06  E-value=2.7e-09  Score=105.57  Aligned_cols=145  Identities=10%  Similarity=-0.007  Sum_probs=92.3

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------HH-H------HHHHHHHHHHHhhHHHHHHh
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------EE-K------KQAKALKVACNLNNAACKLK  460 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~------------~~-~------~~~~~~~~~~~~nla~~~~k  460 (557)
                      ..+...|..++..|+|++|+..|.+++...+.......            ++ .      .+.......++.++|.++..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  102 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLM  102 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence            34566777788888888888888888877665543310            00 0      00000112346677777777


Q ss_pred             hh-CHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          461 LK-DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       461 ~~-~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      ++ ++++|+.++++++.++|.+..+++.+|.+|..+|++++|+..|++++++.|++..+...+..+.....+..+... .
T Consensus       103 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~  181 (330)
T 3hym_B          103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAER-F  181 (330)
T ss_dssp             SCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHH-H
T ss_pred             hhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHH-H
Confidence            77 777777777777777777777777777777777777777777777777777776666666666555555444432 4


Q ss_pred             HHHHhh
Q 008689          540 YGNMFA  545 (557)
Q Consensus       540 ~~~mf~  545 (557)
                      |.+++.
T Consensus       182 ~~~al~  187 (330)
T 3hym_B          182 FSQALS  187 (330)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            444443

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.06  E-value=1.5e-09  Score=112.91  Aligned_cols=113  Identities=26%  Similarity=0.268  Sum_probs=102.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..+++.|+|.+|+..|++++...+.+               ..+++++|.||.+++++++|+.+++++++
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN---------------YIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc---------------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            457888999999999999999999999999886643               23488999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH---HHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR---DVKLEYKT  524 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~---~~~~~l~~  524 (557)
                      .+|++..+++.+|.+|..+|++++|++.|+++++++|++.   .+...+..
T Consensus        89 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~  139 (450)
T 2y4t_A           89 LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIK  139 (450)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHH
T ss_pred             cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence            9999999999999999999999999999999999999987   66655533

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.05  E-value=1.5e-09  Score=89.30  Aligned_cols=79  Identities=11%  Similarity=0.139  Sum_probs=70.3

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEY  522 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l  522 (557)
                      ..+.++|.+++++++|++|+..+++++.++|++..+++++|.+|..+|++++|++.|+++++++|++      ..+...+
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~   84 (111)
T 2l6j_A            5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYRL   84 (111)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999999998      4444444


Q ss_pred             HHHHH
Q 008689          523 KTLKE  527 (557)
Q Consensus       523 ~~l~~  527 (557)
                      ..+..
T Consensus        85 ~~~~~   89 (111)
T 2l6j_A           85 ELAQG   89 (111)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.05  E-value=2e-09  Score=85.09  Aligned_cols=81  Identities=33%  Similarity=0.419  Sum_probs=74.9

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ..+++++|.++.++++|++|+.++++++..+|.+..+++++|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999888887777654


Q ss_pred             H
Q 008689          528 K  528 (557)
Q Consensus       528 ~  528 (557)
                      .
T Consensus        89 ~   89 (91)
T 1na3_A           89 K   89 (91)
T ss_dssp             H
T ss_pred             h
Confidence            3

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.04  E-value=1.9e-09  Score=106.67  Aligned_cols=133  Identities=17%  Similarity=0.077  Sum_probs=115.0

Q ss_pred             HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      +..+...|..++..| ++++|+..|.+++...+....               ++.++|.+|..+++|++|+..+++++..
T Consensus        90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~l~~~~~~~~~~~~A~~~~~~a~~~  154 (330)
T 3hym_B           90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP---------------AWIAYGHSFAVESEHDQAMAAYFTAAQL  154 (330)
T ss_dssp             THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH---------------HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            345678889999999 999999999999987665432               3789999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      +|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+... .|.+++...
T Consensus       155 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~a~~~~  223 (330)
T 3hym_B          155 MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEK-WFLDALEKI  223 (330)
T ss_dssp             TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHH-HHHHHHHHh
Confidence            999999999999999999999999999999999999999998888888777776666553 566665543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.04  E-value=1.6e-09  Score=91.59  Aligned_cols=101  Identities=32%  Similarity=0.418  Sum_probs=91.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..++..+++++|+..|.+++...+...               .++.++|.++..++++++|+..+++++...|
T Consensus        36 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  100 (136)
T 2fo7_A           36 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALELDP  100 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch---------------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence            4466788999999999999999999998765322               2477999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      .+..+++.+|.++..+|++++|+..|++++.++|++
T Consensus       101 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A          101 RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             CChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            999999999999999999999999999999999874

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=99.01  E-value=5.1e-09  Score=110.33  Aligned_cols=147  Identities=15%  Similarity=0.106  Sum_probs=114.2

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHH
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCT  472 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~  472 (557)
                      .+.+..+....+.+..+..+|+|++|+..|.+++......-...       ....+..++|||.+|..+|+|++|+.++.
T Consensus       303 ~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          303 KEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT-------NLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC-------CHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            45566777788888888899999999999999999865432111       13466778999999999999999999999


Q ss_pred             HHHcc-----CCC---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHH---HHHHHHHHHHHHHHHH
Q 008689          473 KVLDL-----DSR---NVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKL---EYKTLKEKMKEYNKKE  536 (557)
Q Consensus       473 ~al~~-----~p~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n~~~~~---~l~~l~~~~~~~~~~~  536 (557)
                      ++|.+     .|+   -..+++++|.+|..+|+|++|+..|++|+.+     .|+++.+..   .+..+...+.+.++.+
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99974     344   4778999999999999999999999999974     677775554   4555566666666666


Q ss_pred             HHHHHHHhhhc
Q 008689          537 AKFYGNMFAKM  547 (557)
Q Consensus       537 ~~~~~~mf~~~  547 (557)
                      . +|+++-.+.
T Consensus       456 ~-~~~~~~~~~  465 (490)
T 3n71_A          456 F-MYHKMREAA  465 (490)
T ss_dssp             H-HHHHHHHHH
T ss_pred             H-HHHHHHHHH
Confidence            4 666665443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.99  E-value=5.3e-09  Score=106.87  Aligned_cols=132  Identities=15%  Similarity=0.126  Sum_probs=98.8

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|+|..|+..|.+|+++.+.....        ......+++|+|.+|..+|+|++|+.++++++
T Consensus       140 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  211 (383)
T 3ulq_A          140 IEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY--------NIRLLQCHSLFATNFLDLKQYEDAISHFQKAY  211 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc--------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3456778888999999999999999999999887765432        12345678888888888888888888888888


Q ss_pred             ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----C-CCCHHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEI-----D-PDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~-p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      .+.+..      ..+++++|.+|..+|++++|++.|++|+++     + |....+...+..+...+.+.++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          212 SMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHH
Confidence            765433      358888888888888888888888888883     5 55556666666666555544443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.99  E-value=1.7e-09  Score=104.30  Aligned_cols=126  Identities=11%  Similarity=-0.023  Sum_probs=105.2

Q ss_pred             HHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHH
Q 008689          408 TLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYR  487 (557)
Q Consensus       408 ~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~  487 (557)
                      .+...++|++|+..|.++++..+..           ......+++++|.+|..+++|++|+..+++++.++|++..+++.
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~   82 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALT-----------DDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNY   82 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_pred             ccCccchHHHHHHHHHHHHhccccc-----------CchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHH
Confidence            3445688999999999999863211           01234568899999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +|.+|..+|++++|++.|+++++++|++..+...+..+...+.+..+... .|.+++.
T Consensus        83 la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~a~~  139 (275)
T 1xnf_A           83 LGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQD-DLLAFYQ  139 (275)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHH-HHHHHHH
Confidence            99999999999999999999999999999998888888777766655443 5555554

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.98  E-value=2.8e-09  Score=86.74  Aligned_cols=67  Identities=18%  Similarity=0.198  Sum_probs=63.6

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      .+++++|.+|+++++|++|+.+++++++++|++..+|+++|.+|..+|++++|++.|++++++.|++
T Consensus         8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~   74 (100)
T 3ma5_A            8 FTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREE   74 (100)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcC
Confidence            4588999999999999999999999999999999999999999999999999999999999997753

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.98  E-value=3.6e-09  Score=104.04  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=92.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+.+|.+|++........        ......+++|+|.+|.++++|++|+.++++++.+
T Consensus       154 ~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~  225 (293)
T 3u3w_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence            45578899999999999999999999999887654222        2355667999999999999999999999999987


Q ss_pred             CCCC------hHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhC
Q 008689          478 DSRN------VKALYRRAQAYIQMA-DLDLAEFDIKKALEID  512 (557)
Q Consensus       478 ~p~~------~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~  512 (557)
                      .+..      ..+|+++|.+|..+| .+++|++.|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            6443      789999999999999 5799999999999763

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.97  E-value=2.7e-09  Score=111.82  Aligned_cols=125  Identities=14%  Similarity=0.057  Sum_probs=99.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc-
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-  477 (557)
                      +..+...|..++..|+|++|+.+|++|+++.+......      ...-.+.+|.|+|.+|..+|+|++|+.++++++.+ 
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~------~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~  124 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQ------AEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVC  124 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGG------CTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccc------cchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence            45567899999999999999999999999876432110      00113456889999999999999999999999875 


Q ss_pred             -------CCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          478 -------DSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       478 -------~p~~~ka~~~~g~a~~~lg--~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                             ++..+.++.++|.++..++  +|++|+++|++|++++|++.++...+..+..++
T Consensus       125 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l  185 (472)
T 4g1t_A          125 EKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRL  185 (472)
T ss_dssp             HHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence                   3456788999999888765  699999999999999999998887777665444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.97  E-value=2.8e-09  Score=104.81  Aligned_cols=138  Identities=13%  Similarity=0.039  Sum_probs=105.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc-
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-  476 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~-  476 (557)
                      .+..+...|..++..++|++|+..|.+|+.+.......         ...+.+++|+|.+|..+++|++|+.++++++. 
T Consensus       114 ~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~  184 (293)
T 3u3w_A          114 FLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV---------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQ  184 (293)
T ss_dssp             HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccH---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34555668898898999999999999999865443322         12455689999999999999999999999994 


Q ss_pred             ------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 008689          477 ------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEY-NKKEAKFYGNM  543 (557)
Q Consensus       477 ------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~-~~~~~~~~~~m  543 (557)
                            ..+....+++++|.+|..+|+|++|++.+++|+++.+..      ..+...++.+..++.+. ++. ...|++.
T Consensus       185 ~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A-~~~~~~A  263 (293)
T 3u3w_A          185 LEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEI-EDAYKKA  263 (293)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHH-HHHHHHH
T ss_pred             HHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHH-HHHHHHH
Confidence                  223346799999999999999999999999999987554      56777777777776632 332 2345544


Q ss_pred             hh
Q 008689          544 FA  545 (557)
Q Consensus       544 f~  545 (557)
                      +.
T Consensus       264 l~  265 (293)
T 3u3w_A          264 SF  265 (293)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.97  E-value=6.1e-09  Score=89.17  Aligned_cols=98  Identities=15%  Similarity=0.168  Sum_probs=86.8

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ...+.++|.+++++++|++|+..+++++.++|++..+++++|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 008689          528 KMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       528 ~~~~~~~~~~~~~~~mf~~  546 (557)
                      .+.+..+... .|++.+..
T Consensus        89 ~~~~~~~A~~-~~~~a~~~  106 (137)
T 3q49_B           89 EMESYDEAIA-NLQRAYSL  106 (137)
T ss_dssp             HTTCHHHHHH-HHHHHHHH
T ss_pred             HHhhHHHHHH-HHHHHHHH
Confidence            8776665543 55555543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.95  E-value=3.9e-09  Score=103.91  Aligned_cols=96  Identities=14%  Similarity=0.077  Sum_probs=86.3

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (557)
Q Consensus       410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g  489 (557)
                      ...|+|++|+..|+++++..|.+.               .+++++|.|+.++|+|++|+..++++|.++|+++.+++++|
T Consensus       177 ~~~~~~~eA~~~~~~~l~~~p~~~---------------~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~  241 (291)
T 3mkr_A          177 AGGEKLQDAYYIFQEMADKCSPTL---------------LLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLV  241 (291)
T ss_dssp             HCTTHHHHHHHHHHHHHHHSCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hCchHHHHHHHHHHHHHHhCCCcH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            345899999999999999866433               34889999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHH-HHHHHHHHHHhCCCCHHHHH
Q 008689          490 QAYIQMADLDL-AEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       490 ~a~~~lg~~~~-A~~~~~~al~l~p~n~~~~~  520 (557)
                      .++..+|++++ |.+.++++++++|+++.+..
T Consensus       242 ~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d  273 (291)
T 3mkr_A          242 VLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE  273 (291)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH
Confidence            99999999976 57899999999999987655

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.95  E-value=1.9e-09  Score=116.51  Aligned_cols=119  Identities=17%  Similarity=0.106  Sum_probs=87.5

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      .+++++|+..|++|++..+.+.               .+++++|.+|..+++|++|+.+++++++++|++..+++++|.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   66 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDF---------------VAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRV   66 (568)
T ss_dssp             -------------------CCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4789999999999998876543               3488999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          492 YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       492 ~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      |..+|++++|++.|++|++++|++..+...+..+...+.+.++... .|.+.+..
T Consensus        67 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al~~  120 (568)
T 2vsy_A           67 RWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAA-AYTRAHQL  120 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHh
Confidence            9999999999999999999999999999999988877776666543 55555543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.95  E-value=1.6e-08  Score=99.86  Aligned_cols=147  Identities=10%  Similarity=0.030  Sum_probs=116.5

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC------------------------hHHHHHHHH---------
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG------------------------DEEKKQAKA---------  445 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~------------------------~~~~~~~~~---------  445 (557)
                      ...+...|..++..|++++|+..|.+++...+......                        .....+...         
T Consensus        89 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  168 (327)
T 3cv0_A           89 IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN  168 (327)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence            34567789999999999999999999998766543211                        011111111         


Q ss_pred             -HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 008689          446 -LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT  524 (557)
Q Consensus       446 -~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~  524 (557)
                       ....++.++|.+|.+++++++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..
T Consensus       169 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~  248 (327)
T 3cv0_A          169 PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAV  248 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence             1245688999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 008689          525 LKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       525 l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      +...+.+.++... .|.++...
T Consensus       249 ~~~~~g~~~~A~~-~~~~a~~~  269 (327)
T 3cv0_A          249 SYSNMSQYDLAAK-QLVRAIYM  269 (327)
T ss_dssp             HHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHhccHHHHHH-HHHHHHHh
Confidence            8777766655543 55555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.94  E-value=3e-09  Score=105.47  Aligned_cols=108  Identities=13%  Similarity=0.080  Sum_probs=89.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+.+.|..+.. |+|++|+.+|++|+.+.+.....         .....++.|+|.+|.++++|++|+.++++++.+
T Consensus       115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~---------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  184 (307)
T 2ifu_A          115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERL---------RQAAELIGKASRLLVRQQKFDEAAASLQKEKSM  184 (307)
T ss_dssp             HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCCh---------hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            45667788888877 88888888888888887653221         234567899999999999999999999999998


Q ss_pred             CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       478 ~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      .+.+      ..+++++|.++..+|++++|+..|++++ ++|+..
T Consensus       185 ~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          185 YKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            6544      3588899999999999999999999999 999764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.93  E-value=1.1e-08  Score=104.38  Aligned_cols=143  Identities=15%  Similarity=0.064  Sum_probs=97.4

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|++..|+..|.+|+++.+.....        ......+++|+|.+|..+++|++|+.++.+++
T Consensus       138 ~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al  209 (378)
T 3q15_A          138 IEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY--------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL  209 (378)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc--------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            4456777788888888888888888888888877654332        11345567778888888888888888888877


Q ss_pred             ccCC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          476 DLDS------RNVKALYRRAQAYIQMADLDLAEFDIKKALE-----IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       476 ~~~p------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~-----l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      .+.+      ....+++++|.+|..+|++++|+..|++|+.     .+|....+...+..+..++.+.++... .+++.+
T Consensus       210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~~al  288 (378)
T 3q15_A          210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQ-FIEEGL  288 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence            7532      1245777788888888888888888888877     566665666666666666655554442 455544


Q ss_pred             hhc
Q 008689          545 AKM  547 (557)
Q Consensus       545 ~~~  547 (557)
                      ...
T Consensus       289 ~~~  291 (378)
T 3q15_A          289 DHI  291 (378)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=4.5e-09  Score=104.20  Aligned_cols=109  Identities=13%  Similarity=0.056  Sum_probs=91.4

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+.+.|+.+.+.|+|++|+.+|.+|+.+.......         .....++.|+|.+|.. ++|++|+.++++++.
T Consensus        74 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~---------~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~  143 (307)
T 2ifu_A           74 HAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTP---------DTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA  143 (307)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCH---------HHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence            346677888888888999999999999999886543221         2245678899999999 999999999999999


Q ss_pred             cCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       477 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      +.+..      ..+++++|.+|..+|+|++|+..|++++.+.|++
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~  188 (307)
T 2ifu_A          144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM  188 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Confidence            87643      6789999999999999999999999999997655

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.93  E-value=3.9e-09  Score=112.39  Aligned_cols=153  Identities=14%  Similarity=0.030  Sum_probs=116.9

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------------CCChHHHHHHH------HHHHHHHhhHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------------SFGDEEKKQAK------ALKVACNLNNA  455 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~------------~~~~~~~~~~~------~~~~~~~~nla  455 (557)
                      .....+..+...|..++..|++++|+..|.+++...+...            ...++-.....      .....++.++|
T Consensus       238 ~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~  317 (537)
T 3fp2_A          238 LRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG  317 (537)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence            3445677788888888889999999999998888755310            00111111111      11245688999


Q ss_pred             HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Q 008689          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~  535 (557)
                      .+|..+++|++|+..+++++..+|++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+...+.+..+.
T Consensus       318 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  397 (537)
T 3fp2_A          318 QMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTA  397 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999988888888887777666655


Q ss_pred             HHHHHHHHhhhc
Q 008689          536 EAKFYGNMFAKM  547 (557)
Q Consensus       536 ~~~~~~~mf~~~  547 (557)
                      .. .|.+++...
T Consensus       398 ~~-~~~~a~~~~  408 (537)
T 3fp2_A          398 IK-QYDIAKRLE  408 (537)
T ss_dssp             HH-HHHHHHHHH
T ss_pred             HH-HHHHHHHcC
Confidence            43 566655443

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=6.6e-09  Score=83.82  Aligned_cols=69  Identities=20%  Similarity=0.299  Sum_probs=65.8

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~  519 (557)
                      .+++|.++++.++|++|+..++++++.+|++.. +++++|.+|..+|++++|++.|+++++++|++..+.
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            358899999999999999999999999999999 999999999999999999999999999999997765

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=6.1e-10  Score=90.02  Aligned_cols=93  Identities=12%  Similarity=0.037  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      ..++|..+++.|+|++|+..|+++++..+.+..              .+++++|.||.++++|++|+.++.++++++|++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKD--------------EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH--------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            457899999999999999999999998764321              148899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ..++++        +.+.+|+..|++++.++|++.
T Consensus        69 ~~~~~~--------~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           69 PALQAR--------KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             THHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence            998865        667889999999998888763

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.92  E-value=8.6e-09  Score=99.24  Aligned_cols=109  Identities=18%  Similarity=0.058  Sum_probs=93.8

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|+|++|+..|.+|+.+........       ......++.++|.+|..+++|++|+.++++++
T Consensus        82 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  154 (283)
T 3edt_B           82 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF-------HPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL  154 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567888999999999999999999999999864321110       02345668999999999999999999999999


Q ss_pred             cc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       476 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      .+        +|....+++.+|.+|..+|++++|+..|++++++
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7778899999999999999999999999999987

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.92  E-value=1.1e-08  Score=108.02  Aligned_cols=119  Identities=17%  Similarity=0.139  Sum_probs=100.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh---hhCHHHHHHHHHHHHc
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---LKDYKQAEKLCTKVLD  476 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k---~~~~~~A~~~~~~al~  476 (557)
                      ..+...|..+++.|+|++|+..|.+++...+.......         ...++.++|.++.+   ++++++|+..+++++.
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~  443 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYV---------GIAPLVGKATLLTRNPTVENFIEATNLLEKASK  443 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSS---------CSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHH---------HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHH
Confidence            34566788888888888888888888888776543110         11248899999999   9999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      .+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+..
T Consensus       444 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          444 LDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888777655543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.92  E-value=5.4e-09  Score=85.51  Aligned_cols=96  Identities=14%  Similarity=0.082  Sum_probs=84.8

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD--NRDVKLEYKTLKE  527 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~--n~~~~~~l~~l~~  527 (557)
                      ++.++|.++..+++|++|+..++++++++|.+..+++.+|.+|..+|++++|++.|+++++++|+  +..+...+..+..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~~   87 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADALR   87 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHHH
Confidence            37899999999999999999999999999999999999999999999999999999999999999  9988888888877


Q ss_pred             HH-HHHHHHHHHHHHHHhhh
Q 008689          528 KM-KEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       528 ~~-~~~~~~~~~~~~~mf~~  546 (557)
                      .+ .+.++.. +.+.+....
T Consensus        88 ~~~~~~~~A~-~~~~~~~~~  106 (112)
T 2kck_A           88 YIEGKEVEAE-IAEARAKLE  106 (112)
T ss_dssp             TCSSCSHHHH-HHHHHHGGG
T ss_pred             HHhCCHHHHH-HHHHHHhhc
Confidence            77 6665544 355555544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.90  E-value=1.5e-08  Score=103.26  Aligned_cols=109  Identities=14%  Similarity=-0.024  Sum_probs=97.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..++..|+|++|+..|.+|+++.+.....         .....+++|+|.||..+++|++|+.++++++.
T Consensus       180 ~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~  250 (378)
T 3q15_A          180 RTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQND---------RFIAISLLNIANSYDRSGDDQMAVEHFQKAAK  250 (378)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            567788899999999999999999999999987643221         24566799999999999999999999999999


Q ss_pred             -----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          477 -----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       477 -----~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                           .+|....+++++|.+|..+|++++|+..+++|+++.+.
T Consensus       251 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          251 VSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence                 78888999999999999999999999999999998554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.90  E-value=5.7e-09  Score=92.71  Aligned_cols=96  Identities=19%  Similarity=0.199  Sum_probs=83.9

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHcc------------------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDL------------------DSRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~------------------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                      +..+.++|.++++.++|++|+..|.+++.+                  +|.+..+|+++|.||..+|+|++|+.++++|+
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            445779999999999999999999999999                  78888999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          510 EIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       510 ~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      +++|++..+...+..+...+.+..+... .|.+.+
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~-~~~~al  124 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEE-DLKLLL  124 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHH-HHHHHH
Confidence            9999999988888888887776666543 444443

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.90  E-value=1.2e-08  Score=104.15  Aligned_cols=110  Identities=15%  Similarity=0.141  Sum_probs=97.0

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      ....+..+...|..+...|+|++|+..|.+|+++.+....         ......++.|+|.||..+|+|++|+.+++++
T Consensus       180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a  250 (383)
T 3ulq_A          180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ---------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA  250 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC---------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3455778889999999999999999999999999875532         1345667999999999999999999999999


Q ss_pred             Hc-----cC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689          475 LD-----LD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (557)
Q Consensus       475 l~-----~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p  513 (557)
                      +.     .+ |....+++++|.+|..+|++++|+..|++|+++.+
T Consensus       251 l~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          251 IAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            99     56 88899999999999999999999999999999843

>1w26_A Trigger factor, TF; chaperone, protein folding, ribosome associated protein, nascent chain, cell division, isomerase; 2.7A {Escherichia coli} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 2vrh_A 1w2b_5

Probab=98.90  E-value=2.8e-09  Score=110.08  Aligned_cols=85  Identities=15%  Similarity=0.268  Sum_probs=76.7

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008689          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (557)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~  244 (557)
                      ..+..||.|++||++.. +|+.|+++  .|+.|.+|.|++++||+++|.||+.|+++.|.+|+..+||..+.        
T Consensus       156 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~G~k~Ge~~~v~v~~~~~yg~~~l--------  226 (432)
T 1w26_A          156 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL--------  226 (432)
T ss_dssp             SCCCTTCEEEECEEEES-SSCBCSSCCCSSEEEETTSCCSCTTHHHHSSSCCSSCEEEEEEECCTTCSCTTT--------
T ss_pred             CCCCCCCEEEEEEEEee-CCeEccCCCccceEEEeCCCCcchHHHHHhCCCCCCCEEEEEECCchhhCCCCC--------
Confidence            35789999999999995 89999876  89999999999999999999999999999999998899997543        


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008689          245 VPPNATLQIALELVSWKT  262 (557)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (557)
                        ++.+++|+|+|+++..
T Consensus       227 --ag~~~~F~V~v~~v~~  242 (432)
T 1w26_A          227 --KGKAAKFAINLKKVEE  242 (432)
T ss_dssp             --SSCEEEEEEECCEECC
T ss_pred             --CCceEEEEEEEEEEec
Confidence              4789999999999864

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.90  E-value=1.7e-08  Score=99.16  Aligned_cols=128  Identities=14%  Similarity=0.055  Sum_probs=95.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH---
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL---  475 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al---  475 (557)
                      +..+...|..+...|+|++|+..|.+|+..........         ....+++|+|.+|..+++|++|+.++++++   
T Consensus       115 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~---------~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~  185 (293)
T 2qfc_A          115 LQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVY---------QNLYIENAIANIYAENGYLKKGIDLFEQILKQL  185 (293)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTT---------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchH---------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            33445567777777888888888888887654332221         135578999999999999999999999999   


Q ss_pred             ccCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       476 ~~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~  535 (557)
                      ...|++    ..+++++|.+|..+|+|++|+..|++|+++.++.      ..+...++.+...+.+.++.
T Consensus       186 ~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A  255 (293)
T 2qfc_A          186 EALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAE  255 (293)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHH
T ss_pred             HhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHH
Confidence            445554    3799999999999999999999999999886431      34556666666666544444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.89  E-value=1.4e-08  Score=99.71  Aligned_cols=107  Identities=16%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|.+|+.+.......        ......+++|+|.+|.++++|++|+.++++++.+
T Consensus       154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~--------~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~  225 (293)
T 2qfc_A          154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDN--------EEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI  225 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCcc--------ccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            46678899999999999999999999999876654322        1223367899999999999999999999999987


Q ss_pred             CCC------ChHHHHHHHHHHHhcCCHHHH-HHHHHHHHHhC
Q 008689          478 DSR------NVKALYRRAQAYIQMADLDLA-EFDIKKALEID  512 (557)
Q Consensus       478 ~p~------~~ka~~~~g~a~~~lg~~~~A-~~~~~~al~l~  512 (557)
                      .+.      ...+|+++|.+|..+|++++| ...|++|+.+.
T Consensus       226 ~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          226 SCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            532      278999999999999999999 88899999764

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.89  E-value=6.9e-09  Score=81.85  Aligned_cols=84  Identities=26%  Similarity=0.315  Sum_probs=75.5

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..++|++|+..|.+|+...+.+.               .++.++|.+|.+++++++|+.++++++.+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA---------------EAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH---------------HHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            456788899999999999999999999999866432               24789999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q 008689          478 DSRNVKALYRRAQAYIQMA  496 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg  496 (557)
                      +|++..+++++|.++..+|
T Consensus        73 ~p~~~~~~~~l~~~~~~~g   91 (91)
T 1na3_A           73 DPNNAEAKQNLGNAKQKQG   91 (91)
T ss_dssp             CTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHhcC
Confidence            9999999999999998765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.88  E-value=1.6e-08  Score=99.01  Aligned_cols=142  Identities=22%  Similarity=0.227  Sum_probs=112.6

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|+|++|+..|.+|+.+........       ......++.++|.+|..+++|++|+.++.+++
T Consensus        66 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  138 (311)
T 3nf1_A           66 PDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD-------HPAVAATLNNLAVLYGKRGKYKEAEPLCKRAL  138 (311)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC-------ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence            34567788899999999999999999999999864321000       12345668899999999999999999999999


Q ss_pred             ccC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLD--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--------DPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       476 ~~~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--------~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      .+.        |....+++++|.+|..+|++++|++.|++++.+        .|....+...+..+...+.+.++... .
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~  217 (311)
T 3nf1_A          139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAET-L  217 (311)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred             HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHH-H
Confidence            873        666889999999999999999999999999998        56556677777777777766655543 5


Q ss_pred             HHHHhh
Q 008689          540 YGNMFA  545 (557)
Q Consensus       540 ~~~mf~  545 (557)
                      |.+++.
T Consensus       218 ~~~al~  223 (311)
T 3nf1_A          218 YKEILT  223 (311)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.87  E-value=1.4e-08  Score=104.15  Aligned_cols=125  Identities=14%  Similarity=0.083  Sum_probs=105.9

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|+|++|+..|++|++..+.+.           .....++.++|.+|..+++|++|+.++++++
T Consensus        45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  113 (411)
T 4a1s_A           45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----------RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDL  113 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----------hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678888999999999999999999999999855322           2344568899999999999999999999999


Q ss_pred             cc------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHHH
Q 008689          476 DL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI------DPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       476 ~~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l------~p~n~~~~~~l~~l~~~~~~  531 (557)
                      .+      ++....+++++|.+|..+|++++|+..|++++.+      .|....+...+..+...+.+
T Consensus       114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            87      6777899999999999999999999999999998      44445566667777666665

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.86  E-value=1.9e-08  Score=108.60  Aligned_cols=132  Identities=11%  Similarity=-0.032  Sum_probs=110.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|++++|+..|.++++..+.+.               ..+++++.+|.+.|++++|+..+++++..+
T Consensus       373 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  437 (597)
T 2xpi_A          373 AVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFG---------------PAWIGFAHSFAIEGEHDQAISAYTTAARLF  437 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            34556678888888888888888888887655322               347899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      |++..+++.+|.+|..+|++++|++.|+++++++|++..+...+..+..+..+.++... .|.+|+..
T Consensus       438 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~  504 (597)
T 2xpi_A          438 QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAIN-HFQNALLL  504 (597)
T ss_dssp             TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHH-HHHHHHHh
Confidence            99999999999999999999999999999999999999888888888777766665553 66666554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.86  E-value=3e-08  Score=81.69  Aligned_cols=96  Identities=17%  Similarity=0.160  Sum_probs=84.5

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      ..++++|.+++..++|++|+..+++++..+|.+..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   84 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEF   84 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999888888888777


Q ss_pred             HHHHHHHHHHHHHHHhh
Q 008689          529 MKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       529 ~~~~~~~~~~~~~~mf~  545 (557)
                      +.+..+... .|.+...
T Consensus        85 ~~~~~~A~~-~~~~~~~  100 (118)
T 1elw_A           85 LNRFEEAKR-TYEEGLK  100 (118)
T ss_dssp             TTCHHHHHH-HHHHHHT
T ss_pred             HhhHHHHHH-HHHHHHH
Confidence            766655443 5555543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.85  E-value=2e-08  Score=85.01  Aligned_cols=97  Identities=22%  Similarity=0.290  Sum_probs=85.6

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ...+.++|.++...++|++|+..+++++..+|.+..+++.+|.+|..++++++|+..|+++++++|++..+...+..+..
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            44578999999999999999999999999999999999999999999999999999999999999999999988888887


Q ss_pred             HHHHHHHHHHHHHHHHhh
Q 008689          528 KMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       528 ~~~~~~~~~~~~~~~mf~  545 (557)
                      .+.+..+... .|.+.+.
T Consensus        96 ~~~~~~~A~~-~~~~~~~  112 (133)
T 2lni_A           96 AMKDYTKAMD-VYQKALD  112 (133)
T ss_dssp             HTTCHHHHHH-HHHHHHH
T ss_pred             HHhhHHHHHH-HHHHHHH
Confidence            7766665543 5555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.85  E-value=1.4e-08  Score=92.97  Aligned_cols=128  Identities=13%  Similarity=0.105  Sum_probs=100.3

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|.+|+.+......         ......++.++|.+|..+++|++|+.++.+++.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   95 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD---------HTAEHRALHQVGMVERMAGNWDAARRCFLEEREL   95 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC---------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4677889999999999999999999999998765432         1335667899999999999999999999999987


Q ss_pred             ---CC----CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--CCHH----HHHHHHHHHHHHHHHHH
Q 008689          478 ---DS----RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP--DNRD----VKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       478 ---~p----~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p--~n~~----~~~~l~~l~~~~~~~~~  534 (557)
                         .+    ....+++++|.+|..+|++++|+..+++++.+.+  .+..    +...+..+...+.+..+
T Consensus        96 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  165 (203)
T 3gw4_A           96 LASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE  165 (203)
T ss_dssp             HHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence               33    2367899999999999999999999999998743  2221    22445555544444443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.85  E-value=2.3e-08  Score=87.25  Aligned_cols=108  Identities=21%  Similarity=0.227  Sum_probs=92.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|.+|+.+.+.....         .....++.++|.++..+++|++|+.++++++.+
T Consensus        48 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~  118 (164)
T 3ro3_A           48 ERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDR---------AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI  118 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc---------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            35678889999999999999999999999988754321         234567889999999999999999999999876


Q ss_pred             CC------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          478 DS------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       478 ~p------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      .+      ....+++.+|.+|..+|++++|++.+++++++...
T Consensus       119 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  161 (164)
T 3ro3_A          119 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE  161 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            32      22678999999999999999999999999988554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.85  E-value=2.9e-08  Score=97.18  Aligned_cols=109  Identities=19%  Similarity=0.118  Sum_probs=92.4

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|+|++|+..|.+++++........       ......++.++|.+|..+++|++|+.++++++
T Consensus       108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~-------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  180 (311)
T 3nf1_A          108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD-------HPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL  180 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT-------CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC-------ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34567788899999999999999999999999864320000       02345668899999999999999999999999


Q ss_pred             cc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          476 DL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       476 ~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      .+        +|....+++.+|.+|..+|++++|+..|++++++
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            98        7777889999999999999999999999999985

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.85  E-value=8.5e-09  Score=89.41  Aligned_cols=102  Identities=15%  Similarity=0.207  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh---CHHHHHHHHHHHHccC-C-CChHHHHHHH
Q 008689          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK---DYKQAEKLCTKVLDLD-S-RNVKALYRRA  489 (557)
Q Consensus       415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~---~~~~A~~~~~~al~~~-p-~~~ka~~~~g  489 (557)
                      ...+.+.|.+++...+.               ...+.+|+|.|+.+.+   ++++++..++.+++.+ | ++..++|++|
T Consensus        14 l~~~~~~y~~e~~~~~~---------------~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA   78 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGSV---------------SKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA   78 (152)
T ss_dssp             HHHHHHHHHHHHHTTCC---------------CHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCCC---------------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence            45566677776653221               1234779999999988   7789999999999998 7 6799999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      .+|+++++|++|+++++++|+++|+|..+......+..++++
T Consensus        79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~~~~k  120 (152)
T 1pc2_A           79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  120 (152)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888888877666643

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.84  E-value=2.7e-08  Score=84.08  Aligned_cols=95  Identities=20%  Similarity=0.221  Sum_probs=83.4

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh---HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV---KALYRRAQAYIQMADLDLAEFDIKKALEIDPDN---RDVKLEYKT  524 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~---ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n---~~~~~~l~~  524 (557)
                      ++++|.++++.++|++|+..+++++..+|++.   .+++++|.+|..+|+|++|+..|+++++++|++   ..+...+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            67899999999999999999999999999998   899999999999999999999999999999999   777888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhh
Q 008689          525 LKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       525 l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      +...+.+..+... .|.++...
T Consensus        85 ~~~~~g~~~~A~~-~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQ-TLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHHcCCHHHHHH-HHHHHHHH
Confidence            8777766665543 56655544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.83  E-value=3.3e-08  Score=100.70  Aligned_cols=130  Identities=15%  Similarity=0.100  Sum_probs=104.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..++..|+|++|+..|.+|+.+.+.....         .....++.++|.+|..++++++|+.++++++.
T Consensus       185 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  255 (406)
T 3sf4_A          185 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL  255 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            345678889999999999999999999999998764321         23455788999999999999999999999998


Q ss_pred             cCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHH
Q 008689          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKK  535 (557)
Q Consensus       477 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~  535 (557)
                      +.+..      ..+++++|.+|..+|++++|+..|++++++.+..      ..+...+..+...+.+..+.
T Consensus       256 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          256 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            87665      7899999999999999999999999999986544      34555566665555544443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.80  E-value=8.5e-08  Score=103.54  Aligned_cols=147  Identities=12%  Similarity=0.045  Sum_probs=114.7

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh------------HHH-HHHH------HHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD------------EEK-KQAK------ALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~------------~~~-~~~~------~~~~~~~~nla~~~~  459 (557)
                      ...+...|..+++.|++++|+..|++++...+.+.....            ++. ....      .....++++++.+|.
T Consensus       305 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  384 (597)
T 2xpi_A          305 SDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYL  384 (597)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHH
Confidence            455677899999999999999999999987765433210            000 0011      112456788999999


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      +.|++++|+..++++++++|.+..+|+.++.+|...|++++|++.|++++++.|++..+...+..+..+..+.++... .
T Consensus       385 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~  463 (597)
T 2xpi_A          385 CVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANE-Y  463 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHH-H
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHH-H
Confidence            999999999999999999999999999999999999999999999999999999988888888887777766666553 6


Q ss_pred             HHHHhhh
Q 008689          540 YGNMFAK  546 (557)
Q Consensus       540 ~~~mf~~  546 (557)
                      |.+|...
T Consensus       464 ~~~~~~~  470 (597)
T 2xpi_A          464 LQSSYAL  470 (597)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7777654

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.80  E-value=3.1e-08  Score=97.57  Aligned_cols=123  Identities=17%  Similarity=0.121  Sum_probs=100.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|++|+...+.+.           .....++.++|.+|..+++|++|+.++++++.+
T Consensus         4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~   72 (338)
T 3ro2_A            4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL   72 (338)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            356778899999999999999999999999854321           234567889999999999999999999999887


Q ss_pred             ------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHHHH
Q 008689          478 ------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR------DVKLEYKTLKEKMKE  531 (557)
Q Consensus       478 ------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~------~~~~~l~~l~~~~~~  531 (557)
                            .+....+++.+|.+|..+|++++|+..|++++++.+...      .+...+..+...+.+
T Consensus        73 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           73 ARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence                  455688999999999999999999999999999866442      255555555555555

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.80  E-value=3.9e-08  Score=96.87  Aligned_cols=141  Identities=15%  Similarity=0.094  Sum_probs=111.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+...|..++..|+|++|+..|.+++++.+.....         .....++.++|.+|..++++++|+.++++++.
T Consensus       181 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  251 (338)
T 3ro2_A          181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK---------AAERRAYSNLGNAYIFLGEFETASEYYKKTLL  251 (338)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh---------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677889999999999999999999999987754321         33455789999999999999999999999998


Q ss_pred             cCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       477 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      +.+..      ..+++.+|.+|..+|++++|+..|++++.+.+..      ..+...+..+...+.+.++.. ..|.+.+
T Consensus       252 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~a~  330 (338)
T 3ro2_A          252 LARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM-HFAEKHL  330 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHH-HHHHHHH
T ss_pred             HHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH-HHHHHHH
Confidence            86655      7899999999999999999999999999986543      235556666666665555544 3566655


Q ss_pred             hhc
Q 008689          545 AKM  547 (557)
Q Consensus       545 ~~~  547 (557)
                      ...
T Consensus       331 ~~~  333 (338)
T 3ro2_A          331 EIS  333 (338)
T ss_dssp             HC-
T ss_pred             HHH
Confidence            543

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.78  E-value=6.3e-08  Score=83.58  Aligned_cols=97  Identities=21%  Similarity=0.157  Sum_probs=84.9

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ..++++|.+++..++|++|+..++++++.+|++   ..+++++|.+|..+++|++|+..|+++++++|++..+...+..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  108 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA  108 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence            347789999999999999999999999999998   99999999999999999999999999999999999888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 008689          526 KEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       526 ~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      ...+.+..+... .|.+.+..
T Consensus       109 ~~~~~~~~~A~~-~~~~al~~  128 (148)
T 2dba_A          109 LEKLGRLDQAVL-DLQRCVSL  128 (148)
T ss_dssp             HHHHTCHHHHHH-HHHHHHHH
T ss_pred             HHHcCCHHHHHH-HHHHHHHc
Confidence            877766665543 55555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.78  E-value=9.6e-08  Score=80.09  Aligned_cols=99  Identities=17%  Similarity=0.242  Sum_probs=86.2

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ....+.++|.++...++|++|+..+++++..+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            45568899999999999999999999999999999999999999999999999999999999999999998888888887


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 008689          527 EKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       527 ~~~~~~~~~~~~~~~~mf~~  546 (557)
                      ..+.+..+... .|.+.+..
T Consensus        91 ~~~~~~~~A~~-~~~~~~~~  109 (131)
T 2vyi_A           91 SSLNKHVEAVA-YYKKALEL  109 (131)
T ss_dssp             HHTTCHHHHHH-HHHHHHHH
T ss_pred             HHhCCHHHHHH-HHHHHHhc
Confidence            77766655543 55555443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.77  E-value=8.9e-08  Score=84.40  Aligned_cols=99  Identities=18%  Similarity=0.187  Sum_probs=86.1

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ....+.++|.+++..++|++|+..+.+++..+|.+..+++++|.++..+|+|++|+..|+++++++|++..+...+..+.
T Consensus        12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            34557899999999999999999999999999999999999999999999999999999999999999998888888887


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 008689          527 EKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       527 ~~~~~~~~~~~~~~~~mf~~  546 (557)
                      ..+.+..+... .|.+.+..
T Consensus        92 ~~~~~~~~A~~-~~~~a~~~  110 (166)
T 1a17_A           92 MALGKFRAALR-DYETVVKV  110 (166)
T ss_dssp             HHTTCHHHHHH-HHHHHHHH
T ss_pred             HHhccHHHHHH-HHHHHHHh
Confidence            77766655443 55555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.77  E-value=9.4e-08  Score=99.01  Aligned_cols=124  Identities=12%  Similarity=0.063  Sum_probs=97.4

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      ....+....+.+...-..|+|++|+..|.+|+......-...       ....+..++|||.+|..+|+|++|+.+++++
T Consensus       294 ~~~~~~~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a  366 (433)
T 3qww_A          294 MVRYARNVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDS-------NVYMLHMMYQAMGVCLYMQDWEGALKYGQKI  366 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT-------SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChh-------chHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            334455555666666667899999999999999865432111       1345677899999999999999999999999


Q ss_pred             Hcc--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHH
Q 008689          475 LDL--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTL  525 (557)
Q Consensus       475 l~~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n~~~~~~l~~l  525 (557)
                      |.+        +|+-...|+++|.+|..+|+|++|+..|++|+++     .|+++.+......+
T Consensus       367 L~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l  430 (433)
T 3qww_A          367 IKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI  430 (433)
T ss_dssp             HHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence            974        3444778999999999999999999999999975     68888776655544

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.77  E-value=5.6e-08  Score=96.23  Aligned_cols=111  Identities=12%  Similarity=0.022  Sum_probs=57.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~  480 (557)
                      .+...|..+.+.|++++|...|++|+++.+.+..              .++.+++.++.+++++++|+..++++++.+|.
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~--------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~  166 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT--------------LVYIQYMKFARRAEGIKSGRMIFKKAREDART  166 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH--------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc--------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Confidence            4556777777778888888888888876543321              02444455555555555555555555554444


Q ss_pred             ChHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          481 NVKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       481 ~~ka~~~~g~a~~~-lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      +..+|...+..... +|++++|++.|++|++++|++..+...+..+
T Consensus       167 ~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~  212 (308)
T 2ond_A          167 RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDY  212 (308)
T ss_dssp             CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            44444433333221 3444455555555544444444444443333

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.75  E-value=1.2e-07  Score=86.99  Aligned_cols=98  Identities=13%  Similarity=0.001  Sum_probs=84.8

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV----------------KALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~----------------ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      ....+.++|.++++.++|++|+..+++++.+.|.+.                .+++++|.+|..+|+|++|+.+|+++++
T Consensus        37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~  116 (198)
T 2fbn_A           37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK  116 (198)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            344578999999999999999999999999999887                8999999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          511 IDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       511 l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      ++|++..+...+..+...+.+..+... .|++.+.
T Consensus       117 ~~p~~~~~~~~lg~~~~~~~~~~~A~~-~~~~al~  150 (198)
T 2fbn_A          117 IDKNNVKALYKLGVANMYFGFLEEAKE-NLYKAAS  150 (198)
T ss_dssp             HSTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHcccHHHHHH-HHHHHHH
Confidence            999999888888888777766665543 4554443

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.75  E-value=3.6e-08  Score=100.47  Aligned_cols=122  Identities=17%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc-
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-  477 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-  477 (557)
                      +..+...|..++..|+|++|+..|++++...+.+.           .....++.++|.+|..+++|++|+.++++++.+ 
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~   77 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----------KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA   77 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----------HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence            56678899999999999999999999999854321           234567899999999999999999999999887 


Q ss_pred             -----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHH
Q 008689          478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKE  531 (557)
Q Consensus       478 -----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~  531 (557)
                           .|....+++.+|.+|..+|++++|+..|++++.+.|..      ..+...+..+...+.+
T Consensus        78 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           78 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence                 45568899999999999999999999999999987653      2355566666655555

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.75  E-value=3.6e-08  Score=101.12  Aligned_cols=137  Identities=13%  Similarity=0.147  Sum_probs=106.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|+..|.+|+++.+.....         .....++.++|.+|..+++|++|+.++++++.+
T Consensus       222 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          222 QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDR---------AAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH---------HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCc---------HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence            34577789999999999999999999999998764321         234556889999999999999999999999988


Q ss_pred             CCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          478 DSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN------RDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       478 ~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n------~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      .+..      ..+++.+|.+|..+|++++|+..|++++.+.+..      ..+...+..+...+.+.++.. ..|++.+
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~-~~~~~al  370 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERAL-KYAEQHL  370 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH-HHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHH-HHHHHHH
Confidence            7654      7899999999999999999999999999886543      234555555555554444433 2444443

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.75  E-value=1.1e-07  Score=79.02  Aligned_cols=98  Identities=28%  Similarity=0.370  Sum_probs=85.0

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      ..++.++|.++...++|++|+..+.+++..+|.+..+++.+|.++..+|++++|+..|++++.++|++..+...+..+..
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            34578999999999999999999999999999999999999999999999999999999999999999888888888777


Q ss_pred             HHHHHHHHHHHHHHHHhhh
Q 008689          528 KMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       528 ~~~~~~~~~~~~~~~mf~~  546 (557)
                      .+.+.++.. ..|.+++..
T Consensus        89 ~~~~~~~A~-~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAI-EYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHH-HHHHHHHHH
T ss_pred             HhcCHHHHH-HHHHHHHHh
Confidence            666555544 355555543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.74  E-value=1.1e-07  Score=91.95  Aligned_cols=75  Identities=15%  Similarity=0.049  Sum_probs=43.8

Q ss_pred             HHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689          450 CNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLE  521 (557)
Q Consensus       450 ~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~  521 (557)
                      +++++|.+|..    .+++++|+.++++++..+  +..+++++|.+|..    .+++++|+.+|++|++++  +..+...
T Consensus        76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~  151 (273)
T 1ouv_A           76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTI  151 (273)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHH
Confidence            35566666666    666666666666666552  55666666666666    666666666666666654  3344445


Q ss_pred             HHHHHHH
Q 008689          522 YKTLKEK  528 (557)
Q Consensus       522 l~~l~~~  528 (557)
                      +..+...
T Consensus       152 lg~~~~~  158 (273)
T 1ouv_A          152 LGSLYDA  158 (273)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHc
Confidence            5544443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.71  E-value=6.7e-08  Score=94.46  Aligned_cols=95  Identities=16%  Similarity=0.181  Sum_probs=84.5

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      .+.++|.++++.++|++|+..+++++..+|++..+++++|.+|..+|+|++|+.+|++|++++|++..+...+..+...+
T Consensus         6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~   85 (281)
T 2c2l_A            6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM   85 (281)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            47799999999999999999999999999999999999999999999999999999999999999999988888888777


Q ss_pred             HHHHHHHHHHHHHHhh
Q 008689          530 KEYNKKEAKFYGNMFA  545 (557)
Q Consensus       530 ~~~~~~~~~~~~~mf~  545 (557)
                      .+..+... .|.+.+.
T Consensus        86 g~~~~A~~-~~~~al~  100 (281)
T 2c2l_A           86 ESYDEAIA-NLQRAYS  100 (281)
T ss_dssp             TCHHHHHH-HHHHHHH
T ss_pred             CCHHHHHH-HHHHHHH
Confidence            76666553 4554443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.71  E-value=7.1e-08  Score=81.00  Aligned_cols=96  Identities=22%  Similarity=0.247  Sum_probs=82.7

Q ss_pred             HHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-------HHHHHH
Q 008689          449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-------RDVKLE  521 (557)
Q Consensus       449 ~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n-------~~~~~~  521 (557)
                      ..++++|.++...++|++|+..+.+++..+|.+..+++++|.+|..+|++++|+..|++++.+.|++       ..+...
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            4578999999999999999999999999999999999999999999999999999999999998877       777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          522 YKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       522 l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +..+...+.+..+.. ..|.+++.
T Consensus        85 la~~~~~~~~~~~A~-~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAI-HFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHhccHHHHH-HHHHHHHH
Confidence            777777666655544 35555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.70  E-value=2.5e-07  Score=95.99  Aligned_cols=126  Identities=8%  Similarity=-0.030  Sum_probs=98.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+......-..+.++|+|++|+..|.++++.....-...       ....+..+.|+|.+|..+|+|++|+.+|.++|.
T Consensus       285 ~~~~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~-------h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~  357 (429)
T 3qwp_A          285 KEVQESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDI-------NIYQLKVLDCAMDACINLGLLEEALFYGTRTME  357 (429)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTT-------SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCcc-------chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            3455556666778889999999999999998644321111       134667789999999999999999999999987


Q ss_pred             c--------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHH
Q 008689          477 L--------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI-----DPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       477 ~--------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l-----~p~n~~~~~~l~~l~~~~  529 (557)
                      +        +|.-...|+++|.+|..+|+|++|+..|++|+++     .|+++.+...+..+....
T Consensus       358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~  423 (429)
T 3qwp_A          358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECD  423 (429)
T ss_dssp             HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            4        3444778999999999999999999999999975     788887776655554433

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.68  E-value=1.4e-07  Score=93.32  Aligned_cols=108  Identities=14%  Similarity=0.155  Sum_probs=89.9

Q ss_pred             hhhHHHHHHHH-------HcCcH-------HHHHHHHHHHHH-HhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH
Q 008689          400 GKKKEQGNTLF-------KAGKY-------ARASKRYEKAVK-YIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (557)
Q Consensus       400 ~~~k~~G~~~~-------~~~~y-------~~A~~~y~~Al~-~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~  464 (557)
                      ..+...|..+.       +.|++       ++|+..|++|+. +.|.+.               .++.++|.++.+++++
T Consensus        51 ~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~---------------~~~~~~~~~~~~~~~~  115 (308)
T 2ond_A           51 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM---------------LLYFAYADYEESRMKY  115 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH---------------HHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH---------------HHHHHHHHHHHhcCCH
Confidence            34445555554       45775       999999999999 555332               3488999999999999


Q ss_pred             HHHHHHHHHHHccCCCChH-HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          465 KQAEKLCTKVLDLDSRNVK-ALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       465 ~~A~~~~~~al~~~p~~~k-a~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      ++|+..++++++++|.+.. +|+++|.++..+|++++|++.|++|++++|.+..+....
T Consensus       116 ~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~  174 (308)
T 2ond_A          116 EKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTA  174 (308)
T ss_dssp             HHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            9999999999999999987 999999999999999999999999999999886555433

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.65  E-value=8.4e-09  Score=108.93  Aligned_cols=102  Identities=12%  Similarity=0.125  Sum_probs=87.9

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|++|+..|++|+++.+...               .+++|+|.+|.++++|++|+.+++++++++
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~---------------~~~~~lg~~~~~~g~~~eA~~~~~~al~~~  104 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI---------------KGYYRRAASNMALGKFRAALRDYETVVKVK  104 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            56788999999999999999999999999866433               348899999999999999999999999999


Q ss_pred             CCChHHHHHHHHH--HHhcCCHHHHHHHHH-----------HHHHhCCCC
Q 008689          479 SRNVKALYRRAQA--YIQMADLDLAEFDIK-----------KALEIDPDN  515 (557)
Q Consensus       479 p~~~ka~~~~g~a--~~~lg~~~~A~~~~~-----------~al~l~p~n  515 (557)
                      |++..+++.++.+  +..++++++|++.++           +++.++|+.
T Consensus       105 p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          105 PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             TTCTTHHHHHHHHHHHHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            9999999999999  899999999999999           888888764

>1t11_A Trigger factor, TF; helix-turn-helix, four-helix-bundle, ppiase, chaperone; 2.50A {Vibrio cholerae} SCOP: a.223.1.1 d.241.2.1 d.26.1.1 PDB: 1l1p_A

Probab=98.65  E-value=9.8e-09  Score=104.59  Aligned_cols=85  Identities=12%  Similarity=0.264  Sum_probs=73.6

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCC
Q 008689          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGA  244 (557)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~  244 (557)
                      ..+..||.|++||++.. +|+.|+++  .++.|.+|.|++++||+++|.||+.|+++.|.||....||..+         
T Consensus       159 ~~~~~gD~V~i~y~g~~-dG~~fd~~~~~~~~~~lG~g~~ipgfee~L~Gmk~Ge~~~v~v~fp~dy~~~~---------  228 (392)
T 1t11_A          159 EAAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAEN---------  228 (392)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTT---------
T ss_pred             CCCCCCCEEEEEEEEEE-CCEEccCCCccceEEEecCCCcchhHHHHhCCCCCCCEEEEEEeCccccccCC---------
Confidence            35789999999999995 89999876  8899999999999999999999999999999997334677543         


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008689          245 VPPNATLQIALELVSWKT  262 (557)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (557)
                       .++.+++|+|+|+++..
T Consensus       229 -laGk~~~F~V~v~~i~~  245 (392)
T 1t11_A          229 -LKGKAAKFAIKVNKVEA  245 (392)
T ss_dssp             -TSSCEEEECCCEEEEEE
T ss_pred             -CCCCeEEEEEEEEEEEc
Confidence             35899999999999864

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.65  E-value=6.7e-08  Score=101.14  Aligned_cols=121  Identities=15%  Similarity=0.066  Sum_probs=97.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--hCHHHHHHHHHHHHc
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDYKQAEKLCTKVLD  476 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~~~A~~~~~~al~  476 (557)
                      +..+.+.|..++..|+|++|+..|.+|+.+.+.......       .....++.++|.+++++  ++|++|+.++++|++
T Consensus        94 ~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~-------~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~  166 (472)
T 4g1t_A           94 LVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR-------IESPELDCEEGWTRLKCGGNQNERAKVCFEKALE  166 (472)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC-------CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc-------hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence            445678999999999999999999999998775432110       00223477888777765  479999999999999


Q ss_pred             cCCCChHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQ---MADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~---lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      ++|+++.+++.+|.++..   .+++++|++.|++|++++|++..+...+....
T Consensus       167 ~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~  219 (472)
T 4g1t_A          167 KKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKL  219 (472)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHH
Confidence            999999999999988655   46778999999999999999988777766443

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.63  E-value=4.2e-07  Score=87.74  Aligned_cols=91  Identities=16%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             HHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689          449 ACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       449 ~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~  520 (557)
                      .+++++|.+|..    .+++++|+.+++++++.+  +..+++++|.+|..    .+++++|+..|+++++++  +..+..
T Consensus       111 ~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~  186 (273)
T 1ouv_A          111 EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCF  186 (273)
T ss_dssp             HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             cHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHH
Confidence            457788888888    888888888888888865  67888888888888    888888888888888774  455666


Q ss_pred             HHHHHHHH----HHHHHHHHHHHHHHHh
Q 008689          521 EYKTLKEK----MKEYNKKEAKFYGNMF  544 (557)
Q Consensus       521 ~l~~l~~~----~~~~~~~~~~~~~~mf  544 (557)
                      .+..+...    ....++.. ..|++..
T Consensus       187 ~lg~~~~~g~~~~~~~~~A~-~~~~~a~  213 (273)
T 1ouv_A          187 NAGNMYHHGEGATKNFKEAL-ARYSKAC  213 (273)
T ss_dssp             HHHHHHHHTCSSCCCHHHHH-HHHHHHH
T ss_pred             HHHHHHHcCCCCCccHHHHH-HHHHHHH
Confidence            67766665    44444433 2444444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.63  E-value=2.7e-07  Score=89.24  Aligned_cols=109  Identities=15%  Similarity=0.058  Sum_probs=89.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC--
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD--  478 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~--  478 (557)
                      .....|..+++.++|..|+..|.+++.....             .+...+++++|.++..+|++++|+.++.+++.-.  
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~-------------~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~  203 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDK-------------FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAG  203 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCH-------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCc-------------ccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCC
Confidence            5677888999999999999999866543210             1223458899999999999999999999998654  


Q ss_pred             CC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689          479 SR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (557)
Q Consensus       479 p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~  523 (557)
                      |. ...+++++|.|+.++|+.++|+..|++++..+|+ ..+...|.
T Consensus       204 P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          204 EACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             TTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            55 6779999999999999999999999999999999 77766654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.62  E-value=2.8e-07  Score=99.20  Aligned_cols=116  Identities=13%  Similarity=0.010  Sum_probs=104.2

Q ss_pred             HhhhHHHHHHHHHcCc----------HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh--CHHH
Q 008689          399 AGKKKEQGNTLFKAGK----------YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQ  466 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~----------y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~  466 (557)
                      ...+..+|..+.+.++          |++|+..|.+|++..|.+..               ++++++.+..+++  +|++
T Consensus        63 ~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~---------------aW~hR~w~l~~l~~~~~~~  127 (567)
T 1dce_A           63 ATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------------TWHHRCWLLSRLPEPNWAR  127 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHHHcccccHHH
Confidence            4566777888877777          99999999999998776543               3889999999999  7899


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      |+..|++++++||.|..||+.|+.++..++ .+++|+++++++++++|.|..++.....+..++
T Consensus       128 el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l  191 (567)
T 1dce_A          128 ELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  191 (567)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhh
Confidence            999999999999999999999999999999 999999999999999999999999988887765

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.60  E-value=3.8e-07  Score=74.61  Aligned_cols=79  Identities=25%  Similarity=0.216  Sum_probs=69.6

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccC-------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLD-------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~-------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~  523 (557)
                      ++.+|..++++++|..|+.++++|+...       +.....+..+|.||.++|++++|+..+++|++++|++..+...+.
T Consensus         8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n~~   87 (104)
T 2v5f_A            8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (104)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhhHH
Confidence            5689999999999999999999999853       346788999999999999999999999999999999988877777


Q ss_pred             HHHHHH
Q 008689          524 TLKEKM  529 (557)
Q Consensus       524 ~l~~~~  529 (557)
                      .+...+
T Consensus        88 ~~~~~~   93 (104)
T 2v5f_A           88 YFEYIM   93 (104)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555444

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.60  E-value=1.5e-07  Score=95.88  Aligned_cols=95  Identities=24%  Similarity=0.191  Sum_probs=83.6

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHc----------------cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLD----------------LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~----------------~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p  513 (557)
                      .+.++|.+++++++|++|+..|+++|+                ++|.+..+|+++|.+|..+++|++|+++|++|++++|
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            377999999999999999999999998                7888899999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          514 DNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       514 ~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      ++..+...+..+...+.+.++... .|++.+.
T Consensus       305 ~~~~a~~~lg~~~~~~g~~~eA~~-~l~~Al~  335 (370)
T 1ihg_A          305 SNTKALYRRAQGWQGLKEYDQALA-DLKKAQE  335 (370)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             hhHHHHHHHHHHHHHccCHHHHHH-HHHHHHH
Confidence            999988888888877776665543 5555443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.60  E-value=5.4e-08  Score=81.30  Aligned_cols=86  Identities=12%  Similarity=0.149  Sum_probs=71.8

Q ss_pred             hhhCHHHHHHHHHHHHcc---CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDL---DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~---~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~  536 (557)
                      .+|+|++|+.++++++++   +|++..+++++|.+|..+|+|++|++.|+++++++|++..+...+..+...+.+.++..
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   69999999999999999999999999999999999999999999999988887776655


Q ss_pred             HHHHHHHhhh
Q 008689          537 AKFYGNMFAK  546 (557)
Q Consensus       537 ~~~~~~mf~~  546 (557)
                      . .|.+.+..
T Consensus        82 ~-~~~~al~~   90 (117)
T 3k9i_A           82 E-LLLKIIAE   90 (117)
T ss_dssp             H-HHHHHHHH
T ss_pred             H-HHHHHHHh
Confidence            3 55555443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.60  E-value=5.2e-07  Score=82.36  Aligned_cols=110  Identities=15%  Similarity=0.039  Sum_probs=91.3

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|+|++|+..|.+|+.+.......        ......+++|+|.+|..+|+|++|+.++.+++
T Consensus        63 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al  134 (203)
T 3gw4_A           63 TAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPED--------PLAASANAYEVATVALHFGDLAGARQEYEKSL  134 (203)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc--------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            3456778899999999999999999999999997644322        12345678999999999999999999999998


Q ss_pred             ccCC--CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Q 008689          476 DLDS--RN----VKALYRRAQAYIQMADLDLAEFDIKKALEIDP  513 (557)
Q Consensus       476 ~~~p--~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p  513 (557)
                      .+.+  .+    ..++.++|.+|..+|++++|++.|++|+.+..
T Consensus       135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~  178 (203)
T 3gw4_A          135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA  178 (203)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            7532  12    44678999999999999999999999998743

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.59  E-value=1.9e-07  Score=81.75  Aligned_cols=72  Identities=13%  Similarity=0.162  Sum_probs=66.4

Q ss_pred             HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADL----------DLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~----------~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      -++++|++|+..++++++++|+++.+|+++|.++..++++          ++|+..|++|++++|++.++...+..+...
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3577899999999999999999999999999999999876          599999999999999999999999988877


Q ss_pred             HH
Q 008689          529 MK  530 (557)
Q Consensus       529 ~~  530 (557)
                      +.
T Consensus        93 lg   94 (158)
T 1zu2_A           93 FA   94 (158)
T ss_dssp             HH
T ss_pred             hc
Confidence            64

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.56  E-value=2e-07  Score=86.90  Aligned_cols=129  Identities=14%  Similarity=0.019  Sum_probs=91.0

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc----------CC-C--ChHHHH-----HHHHHHHHHHhhHHHHHHh
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD----------TS-F--GDEEKK-----QAKALKVACNLNNAACKLK  460 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~----------~~-~--~~~~~~-----~~~~~~~~~~~nla~~~~k  460 (557)
                      +..+...|..++..+++.+|+..|++|++.....          .. .  ..++..     ..+.-...+++|||.+|..
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~y~~   97 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEKAVEAGSKSGEIVLARVLVN   97 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTSSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence            5667788889999999999999999988742110          00 0  111100     0111134457788888887


Q ss_pred             ----hhCHHHHHHHHHHHHccCC--CChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          461 ----LKDYKQAEKLCTKVLDLDS--RNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       461 ----~~~~~~A~~~~~~al~~~p--~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                          .+++++|+.++.++++..+  .++.+++++|.+|..    .+++++|+.+|++|.++ |.+..+...|..+...
T Consensus        98 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~  174 (212)
T 3rjv_A           98 RQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQ  174 (212)
T ss_dssp             GGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHH
T ss_pred             CCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHc
Confidence                7888888888888888877  358888888888888    77888888888888888 6676677777766544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.56  E-value=2.6e-07  Score=86.06  Aligned_cols=76  Identities=14%  Similarity=-0.010  Sum_probs=66.1

Q ss_pred             HHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHhCCCCHH
Q 008689          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM-A-----DLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l-g-----~~~~A~~~~~~al~l~p~n~~  517 (557)
                      ..+++|||.+|..    .+++++|+.+++++++. +.+..+++++|.+|... +     ++++|+.+|++|.+..  +..
T Consensus       125 ~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g--~~~  201 (212)
T 3rjv_A          125 VDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG--FDT  201 (212)
T ss_dssp             HHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC--CHH
Confidence            4568999999999    89999999999999998 77888999999999875 3     8999999999999985  555


Q ss_pred             HHHHHHHHH
Q 008689          518 VKLEYKTLK  526 (557)
Q Consensus       518 ~~~~l~~l~  526 (557)
                      +...+..+.
T Consensus       202 A~~~l~~l~  210 (212)
T 3rjv_A          202 GCEEFDRIS  210 (212)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhh
Confidence            777776664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.53  E-value=5.4e-07  Score=96.94  Aligned_cols=137  Identities=10%  Similarity=-0.011  Sum_probs=107.9

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC--------
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--------  463 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~--------  463 (557)
                      ..+++.-.........+.+.++| ++|+..|.+++.+.|....               ++++++.+..++++        
T Consensus        22 ~~k~~~y~~~~~~~~~~~~~~~~~eeal~~~~~~l~~nP~~~t---------------aW~~R~~~l~~l~~~~~~~~~~   86 (567)
T 1dce_A           22 EQKLKLYQSATQAVFQKRQAGELDESVLELTSQILGANPDFAT---------------LWNCRREVLQHLETEKSPEESA   86 (567)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHH---------------HHHHHHHHHHhcccccchhhhh
Confidence            34444444444455555566654 5779999999999886543               38899999999998        


Q ss_pred             --HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          464 --YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       464 --~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg--~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                        |++++..++++++.+|.+..||+.|+.++..++  +|++|++.++++++++|.|..++...+-+..++....+.+-+.
T Consensus        87 ~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~  166 (567)
T 1dce_A           87 ALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAF  166 (567)
T ss_dssp             HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHH
Confidence              999999999999999999999999999999999  7799999999999999999988888877766665222334344


Q ss_pred             HHHHh
Q 008689          540 YGNMF  544 (557)
Q Consensus       540 ~~~mf  544 (557)
                      +.++.
T Consensus       167 ~~~~I  171 (567)
T 1dce_A          167 TDSLI  171 (567)
T ss_dssp             HHTTT
T ss_pred             HHHHH
Confidence            44443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.53  E-value=8.7e-07  Score=72.42  Aligned_cols=83  Identities=19%  Similarity=0.136  Sum_probs=70.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+.+.|..+|+.++|..|+.-|.+|++..+......        .....++.++|.||.++|+++.|+.++++++.++
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~--------~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~   76 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCc--------ccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence            45577899999999999999999999999876442110        1144668899999999999999999999999999


Q ss_pred             CCChHHHHHHH
Q 008689          479 SRNVKALYRRA  489 (557)
Q Consensus       479 p~~~ka~~~~g  489 (557)
                      |++..++.+++
T Consensus        77 P~~~~~~~n~~   87 (104)
T 2v5f_A           77 PEHQRANGNLK   87 (104)
T ss_dssp             TTCHHHHHHHH
T ss_pred             CCCHHHHhhHH
Confidence            99999988886

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.52  E-value=2.3e-07  Score=83.50  Aligned_cols=116  Identities=11%  Similarity=0.049  Sum_probs=91.0

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHH------HHHHHHHhh
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAK------ALKVACNLN  453 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~--------------~~~~~~~~~------~~~~~~~~n  453 (557)
                      .....+..+...|..+++.|++++|+..|++++...| +...              ..+.....+      .-...++++
T Consensus        35 ~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~  113 (176)
T 2r5s_A           35 ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACE  113 (176)
T ss_dssp             HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHH
Confidence            3444567788899999999999999999999877654 2110              000011111      112567889


Q ss_pred             HHHHHHhhhCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          454 NAACKLKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       454 la~~~~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      +|.++..+|++++|+..+.++++.+|++  ..+++++|.++..+|++++|+..|++++.
T Consensus       114 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          114 LAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            9999999999999999999999999976  66999999999999999999999999875

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.47  E-value=1.4e-06  Score=85.94  Aligned_cols=113  Identities=12%  Similarity=-0.136  Sum_probs=71.6

Q ss_pred             HhhhHHHHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHH----Hhh---hCHHHHHH
Q 008689          399 AGKKKEQGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK----LKL---KDYKQAEK  469 (557)
Q Consensus       399 a~~~k~~G~~~~~~~--~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~----~k~---~~~~~A~~  469 (557)
                      ......+|..+...+  ++++|+..+.+++...|.+...               +++++.+.    .++   +++++++.
T Consensus        67 ~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a---------------W~~R~~iL~~~~~~l~~~~~~~~EL~  131 (306)
T 3dra_A           67 YTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI---------------WNYRQLIIGQIMELNNNDFDPYREFD  131 (306)
T ss_dssp             HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH---------------HHHHHHHHHHHHHHTTTCCCTHHHHH
T ss_pred             HHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH---------------HHHHHHHHHHHHHhccccCCHHHHHH
Confidence            455677888888887  9999999999999887755432               44444444    333   45566666


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHhcCCHH--HHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLD--LAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~--~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      .|+++|+.+|.|..||+.|+.++..++.++  ++++.+.++++.+|.|-.+......+.
T Consensus       132 ~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll  190 (306)
T 3dra_A          132 ILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLL  190 (306)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            666666666666666666666666666555  666666666666666655554444443

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.46  E-value=1e-06  Score=86.85  Aligned_cols=123  Identities=19%  Similarity=0.116  Sum_probs=102.0

Q ss_pred             HHHHcCcH-HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh--CHHHHHHHHHHHHccCCCChHH
Q 008689          408 TLFKAGKY-ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       408 ~~~~~~~y-~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      ...+.+.| ++|+.++.++|.+.|...+               ++++++.+...++  .+++++..++++|..+|.+..+
T Consensus        41 a~~~~~e~s~~aL~~t~~~L~~nP~~~t---------------aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~a  105 (306)
T 3dra_A           41 ALMKAEEYSERALHITELGINELASHYT---------------IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQI  105 (306)
T ss_dssp             HHHHTTCCSHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHCcHHHH---------------HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHH
Confidence            33445555 6999999999999886554               3889999999999  9999999999999999999999


Q ss_pred             HHHHHHHH----Hhc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhh
Q 008689          485 LYRRAQAY----IQM---ADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-KKEAKFYGNMFA  545 (557)
Q Consensus       485 ~~~~g~a~----~~l---g~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~-~~~~~~~~~mf~  545 (557)
                      |+.|+.++    ..+   ++++++++.+.++++.+|.|-.+....+-+..++.... ..+...+.+++.
T Consensus       106 W~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~  174 (306)
T 3dra_A          106 WNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVID  174 (306)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHH
Confidence            99999999    777   89999999999999999999988888777766665432 244455666654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.46  E-value=2.7e-06  Score=86.02  Aligned_cols=108  Identities=15%  Similarity=0.079  Sum_probs=86.2

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+...|..++..|+|++|...|.+|+.+.+.....         .....+++++|.++..+|+|.+|+.++.+++.+
T Consensus        52 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~  122 (373)
T 1hz4_A           52 RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVW---------HYALWSLIQQSEILFAQGFLQTAWETQEKAFQL  122 (373)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            45567788999999999999999999999987754321         123455778899999999999999999998876


Q ss_pred             C--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          478 D--------SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       478 ~--------p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                      .        |....++.++|.+|..+|++++|+..+++++.+.+.
T Consensus       123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            4        334567788899999999999999999999988775

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.42  E-value=1.2e-06  Score=73.02  Aligned_cols=104  Identities=13%  Similarity=0.172  Sum_probs=83.2

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH---HHHHHHHHHccC-C-CChHHHHH
Q 008689          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ---AEKLCTKVLDLD-S-RNVKALYR  487 (557)
Q Consensus       413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~---A~~~~~~al~~~-p-~~~ka~~~  487 (557)
                      .....+.+.|.+++....    .           ...+.+|+|.|+.+.++...   +|..+...+..+ | .+-.++|.
T Consensus        15 ~~l~~~~~~y~~e~~~~~----~-----------s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~   79 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS----V-----------SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY   79 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC----C-----------CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCC----C-----------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence            344556666776655322    1           12346799999999887776   999999999887 5 57889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          488 RAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       488 ~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      +|.+|+++|+|++|+..++..|+++|+|..+..+...+..++.+
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999988888877776643

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.41  E-value=1.5e-06  Score=69.33  Aligned_cols=68  Identities=19%  Similarity=0.040  Sum_probs=61.3

Q ss_pred             HHhhHHHHHHhhhC---HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      ++..+|.+++..++   ..+|...++++|.+||++++|++.+|.++...|+|++|+..+++++..+|.+..
T Consensus         8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            36678888866655   799999999999999999999999999999999999999999999999999543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.40  E-value=3e-06  Score=84.53  Aligned_cols=120  Identities=15%  Similarity=0.050  Sum_probs=102.0

Q ss_pred             HcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689          411 KAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSRNVKALYRRA  489 (557)
Q Consensus       411 ~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~~~ka~~~~g  489 (557)
                      +....++|+..+.++|.+.|....               +++.++.+...++ .+++++..++++|..+|.+..+|+.|+
T Consensus        66 ~~e~se~AL~lt~~~L~~nP~~yt---------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~  130 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRMNPAHYT---------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRL  130 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHhCchhHH---------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            345567999999999999886543               3888999999999 599999999999999999999999999


Q ss_pred             HHHHhc-C-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhh
Q 008689          490 QAYIQM-A-DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN-------KKEAKFYGNMFA  545 (557)
Q Consensus       490 ~a~~~l-g-~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~-------~~~~~~~~~mf~  545 (557)
                      .++..+ + +++++++.++++++++|.|-.+....+-+...+....       ..+-..+.+++.
T Consensus       131 wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~  195 (349)
T 3q7a_A          131 LLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLR  195 (349)
T ss_dssp             HHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHH
Confidence            999999 8 9999999999999999999988888777777766554       355556666654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.39  E-value=6.2e-06  Score=81.82  Aligned_cols=100  Identities=13%  Similarity=0.019  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh--CHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q 008689          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK--DYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (557)
Q Consensus       415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~--~~~~A~~~~~~al~~~p~~~ka~~~~g~a~  492 (557)
                      +.+++..+..++...|.+..               ++++++.+..+++  .|++++..|+++|+.+|.|..||+.|+.++
T Consensus        90 l~~EL~~~~~~L~~~PKny~---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl  154 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYG---------------TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVA  154 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHH---------------HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            78999999999988775543               3889999999998  499999999999999999999999999999


Q ss_pred             HhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          493 IQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       493 ~~lg~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ..++. ++++++++.++++.+|.|..+......+...+
T Consensus       155 ~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          155 AQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999 69999999999999999999998888877666

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.34  E-value=9.5e-07  Score=71.45  Aligned_cols=80  Identities=13%  Similarity=0.039  Sum_probs=65.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..+++.|+|++|+..|++|+++.|....               +++++|.||.+++++++|+..+++++++.
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~---------------a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVG---------------TYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH---------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            556789999999999999999999999999876553               38899999999999999999999999886


Q ss_pred             CC--ChHHHHHHHHHHH
Q 008689          479 SR--NVKALYRRAQAYI  493 (557)
Q Consensus       479 p~--~~ka~~~~g~a~~  493 (557)
                      |.  +..+...+...+.
T Consensus        72 ~~~~~~~~~~~l~~~l~   88 (100)
T 3ma5_A           72 REEGTQKDLSELQDAKL   88 (100)
T ss_dssp             HHHSCHHHHHHHHHHHH
T ss_pred             hcCCchhHHHHHHHHHH
Confidence            54  3444444444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.34  E-value=2.8e-06  Score=73.22  Aligned_cols=97  Identities=11%  Similarity=-0.059  Sum_probs=79.7

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCC
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~  480 (557)
                      .|..++..+.+.+|+..|++|++.-.                 ..+++|||.+|..    .+++++|+.+++++.+.  .
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~g~-----------------~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g   91 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACELNS-----------------GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--N   91 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcCCC-----------------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--C
Confidence            77777777888889999999987621                 2347899999998    89999999999999886  6


Q ss_pred             ChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 008689          481 NVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVKLEY  522 (557)
Q Consensus       481 ~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~l  522 (557)
                      ++.|++++|.+|..    .+++++|+.+|++|.++.  +..+...|
T Consensus        92 ~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~l  135 (138)
T 1klx_A           92 DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG--SEDACGIL  135 (138)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHC
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHH
Confidence            89999999999999    899999999999999884  44444433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.33  E-value=3.5e-06  Score=69.63  Aligned_cols=78  Identities=12%  Similarity=0.101  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       466 ~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      .|+..++++++.+|++..+++.+|.+|..+|++++|+..|+++++++|++..+...+..+...+.+..+... .|.+.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQ-AWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH-HHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHH-HHHHHH
Confidence            578999999999999999999999999999999999999999999999999988888888777766555442 444443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.33  E-value=3.5e-06  Score=83.62  Aligned_cols=124  Identities=10%  Similarity=-0.028  Sum_probs=96.4

Q ss_pred             HHHHHHcCcHH-HHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC----------HHHHHHHHHHH
Q 008689          406 GNTLFKAGKYA-RASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD----------YKQAEKLCTKV  474 (557)
Q Consensus       406 G~~~~~~~~y~-~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~----------~~~A~~~~~~a  474 (557)
                      -....+.++|. +|+..+.+++.+.|.....               ++.++.+...++.          +++++..++.+
T Consensus        36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~yta---------------Wn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~  100 (331)
T 3dss_A           36 VFQKRQAGELDESVLELTSQILGANPDFATL---------------WNCRREVLQHLETEKSPEESAALVKAELGFLESC  100 (331)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHTTCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHH---------------HHHHHHHHHHhcccccchhhhHHHHHHHHHHHHH
Confidence            33334567766 7999999999988765433               6667776666655          79999999999


Q ss_pred             HccCCCChHHHHHHHHHHHhcCC--HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          475 LDLDSRNVKALYRRAQAYIQMAD--LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~a~~~lg~--~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      |..+|.|..+|+.|+.++..++.  ++++++.+.++++++|.|-.+....+-+...+....+.+-..+.+++
T Consensus       101 L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I  172 (331)
T 3dss_A          101 LRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLI  172 (331)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHH
Confidence            99999999999999999999994  99999999999999999998888777666555432233434444444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.33  E-value=1.1e-06  Score=84.94  Aligned_cols=127  Identities=12%  Similarity=-0.022  Sum_probs=99.1

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC-
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-  481 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-  481 (557)
                      ...+..+...|+|++|...|..++...|.               .. .++++|.++++.++|.+|+.++.+++...++. 
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~---------------~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~  169 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAGSE---------------HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL  169 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTTCH---------------HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCc---------------hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc
Confidence            44577888899999999999877653321               11 47899999999999999999999888763221 


Q ss_pred             -hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          482 -VKALYRRAQAYIQMADLDLAEFDIKKALEID--PD-NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       482 -~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~--p~-n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                       ..++|.+|.++..+|++++|+..|++++.-.  |. ..++...+..+..++.+.++... .|++++..
T Consensus       170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~-~l~~a~a~  237 (282)
T 4f3v_A          170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVA-LLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHH-HHHHHHhc
Confidence             4589999999999999999999999998654  55 45677778888777777666553 66666654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.29  E-value=1e-06  Score=86.20  Aligned_cols=113  Identities=12%  Similarity=-0.049  Sum_probs=89.0

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-------------CChHHHHHH------HHHHHHHHhhHHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-------------FGDEEKKQA------KALKVACNLNNAACK  458 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~-------------~~~~~~~~~------~~~~~~~~~nla~~~  458 (557)
                      .+..+...|..+.+.|++++|+..|.+++...+....             ...+.....      ..-...+++++|.++
T Consensus       150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l  229 (287)
T 3qou_A          150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL  229 (287)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            3567788889999999999999999888765442100             000011111      112346789999999


Q ss_pred             HhhhCHHHHHHHHHHHHccCCCC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      ..+|++++|+..+.++++.+|++  ..++.+++.++..+|+.++|...|++++.
T Consensus       230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            99999999999999999999999  99999999999999999999999999985

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.27  E-value=3.9e-06  Score=89.56  Aligned_cols=116  Identities=12%  Similarity=0.036  Sum_probs=76.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..+.+.|++++|...|.+|+...+.+.              ..++.+++.++.+++++++|+..+++|++..|
T Consensus       322 ~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~--------------~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~  387 (530)
T 2ooe_A          322 LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDAR  387 (530)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc--------------hHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            3455677788888999999999999998654321              01356666666666777777777777776666


Q ss_pred             CChHHHHHHHHH-HHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          480 RNVKALYRRAQA-YIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       480 ~~~ka~~~~g~a-~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      .+...+...+.. +..+|++++|+..|+++++.+|++..+...+..+...+
T Consensus       388 ~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~  438 (530)
T 2ooe_A          388 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  438 (530)
T ss_dssp             CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred             CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhC
Confidence            666665555444 33466777777777777777776666665555554433

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.24  E-value=3.7e-06  Score=83.87  Aligned_cols=116  Identities=9%  Similarity=-0.126  Sum_probs=101.2

Q ss_pred             HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-h-CHHHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-K-DYKQAEKLCTKVL  475 (557)
Q Consensus       399 a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-~-~~~~A~~~~~~al  475 (557)
                      ......++..+...+ .+++|+..+.+++...|.+..               ++++++.+..++ + ++++++..|+++|
T Consensus        88 ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~---------------aW~hR~wlL~~l~~~~~~~EL~~~~k~L  152 (349)
T 3q7a_A           88 YTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQ---------------VWHHRLLLLDRISPQDPVSEIEYIHGSL  152 (349)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHH---------------HHHHHHHHHHHHCCSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence            345667888888888 599999999999988775543               378899998888 7 8999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLD--------LAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~--------~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      +.+|.|..||+.|+.++..++.++        ++++.++++++.+|.|..+......+...+
T Consensus       153 ~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l  214 (349)
T 3q7a_A          153 LPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSR  214 (349)
T ss_dssp             SSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTS
T ss_pred             HhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            999999999999999999999988        999999999999999998888877775554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.19  E-value=5e-06  Score=87.46  Aligned_cols=110  Identities=12%  Similarity=0.004  Sum_probs=91.1

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      +..+..+.+.|..|..+|+|++|+.+|.+|+......-...       .......++|||.+|..+|+|++|+.++.+||
T Consensus       348 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al  420 (490)
T 3n71_A          348 LYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHN-------NAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY  420 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTT-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            45678889999999999999999999999999865432111       13456678999999999999999999999998


Q ss_pred             cc-----CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          476 DL-----DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       476 ~~-----~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      ++     .|++   .+.+-.+++++..++.|++|...|.+|.+-.
T Consensus       421 ~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          421 AILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            74     4555   6677789999999999999999999987543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.16  E-value=2e-05  Score=79.57  Aligned_cols=138  Identities=9%  Similarity=-0.037  Sum_probs=102.2

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+...|..++..|++++|+..+.+|+...+...          ......+++++|.+|...|+|++|+..+.+++
T Consensus        11 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al   80 (373)
T 1hz4_A           11 TMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGW----------FYSRIVATSVLGEVLHCKGELTRSLALMQQTE   80 (373)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTC----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCc----------hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            34466677889999999999999999999998764221          12345568899999999999999999999999


Q ss_pred             ccCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          476 DLDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEIDP--------DNRDVKLEYKTLKEKMKEYNKKEAKFYG  541 (557)
Q Consensus       476 ~~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p--------~n~~~~~~l~~l~~~~~~~~~~~~~~~~  541 (557)
                      .+.+..      ..+++++|.++..+|++++|+..|++++.+.+        ....+...+..+...+.+..+... .+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~-~~~  159 (373)
T 1hz4_A           81 QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEA-SAR  159 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHH-HHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHH-HHH
Confidence            875433      34578999999999999999999999998753        222344445555544444444332 444


Q ss_pred             HHh
Q 008689          542 NMF  544 (557)
Q Consensus       542 ~mf  544 (557)
                      +.+
T Consensus       160 ~al  162 (373)
T 1hz4_A          160 SGI  162 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.16  E-value=1.3e-05  Score=84.65  Aligned_cols=78  Identities=21%  Similarity=0.084  Sum_probs=67.8

Q ss_pred             HHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCC---CH
Q 008689          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPD---NR  516 (557)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~---n~  516 (557)
                      ..+++++|.+|..    .+++++|+.+++++++.  .+..+++++|.+|..    .+++++|+.+|++|++.+|+   +.
T Consensus       363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~  440 (490)
T 2xm6_A          363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ--GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTE  440 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCH
Confidence            3458899999999    89999999999999986  479999999999999    89999999999999999955   77


Q ss_pred             HHHHHHHHHHH
Q 008689          517 DVKLEYKTLKE  527 (557)
Q Consensus       517 ~~~~~l~~l~~  527 (557)
                      .+...+..+..
T Consensus       441 ~a~~~l~~~~~  451 (490)
T 2xm6_A          441 NRNITEKKLTA  451 (490)
T ss_dssp             HHHHHHTTSCH
T ss_pred             HHHHHHHhcCH
Confidence            77777766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.15  E-value=1.8e-05  Score=84.36  Aligned_cols=114  Identities=11%  Similarity=0.112  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh-------hhCHH-------HHHHHHHHHHc-cCCC
Q 008689          416 ARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK-------LKDYK-------QAEKLCTKVLD-LDSR  480 (557)
Q Consensus       416 ~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k-------~~~~~-------~A~~~~~~al~-~~p~  480 (557)
                      .+|+..|++|+...|.+.               .+++++|..+.+       +|+++       +|+..+++|++ ++|+
T Consensus       255 ~~a~~~y~~al~~~p~~~---------------~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~  319 (530)
T 2ooe_A          255 KRVMFAYEQCLLVLGHHP---------------DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK  319 (530)
T ss_dssp             HHHHHHHHHHHHHHTTCH---------------HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc
Confidence            578889999999887654               337788888876       78877       99999999997 8999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR-DVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~-~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      +..+++.+|..+..+|++++|++.|++++++.|.+. .+...+..+..+....++. ++.|.+..+
T Consensus       320 ~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A-~~~~~~Al~  384 (530)
T 2ooe_A          320 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSG-RMIFKKARE  384 (530)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHH-HHHHHHHHh
Confidence            999999999999999999999999999999999985 5777777666555544433 345555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.09  E-value=2.2e-05  Score=65.54  Aligned_cols=83  Identities=16%  Similarity=0.210  Sum_probs=71.3

Q ss_pred             HHhhHHHHHHhhhC---HHHHHHHHHHHHccCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      +.+|+|.|..+.++   ..+++..+...++.+|. .-..+|.+|.+|.++|+|++|+++.+.+|+++|+|..+..+...+
T Consensus        42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I  121 (134)
T 3o48_A           42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  121 (134)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            36688888887765   45789999999988884 488999999999999999999999999999999999988888888


Q ss_pred             HHHHHHH
Q 008689          526 KEKMKEY  532 (557)
Q Consensus       526 ~~~~~~~  532 (557)
                      ..++.+.
T Consensus       122 e~ki~kd  128 (134)
T 3o48_A          122 EDKIQKE  128 (134)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            7777543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.06  E-value=4e-05  Score=64.85  Aligned_cols=81  Identities=16%  Similarity=0.221  Sum_probs=69.3

Q ss_pred             HHhhHHHHHHhhhC---HHHHHHHHHHHHccCCC-ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKD---YKQAEKLCTKVLDLDSR-NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       450 ~~~nla~~~~k~~~---~~~A~~~~~~al~~~p~-~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      +.+|+|.|..+.++   -.+++..+...+..+|. .-.++|.+|.+|+++|+|++|+++.+..|+++|+|.++..+...+
T Consensus        41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~I  120 (144)
T 1y8m_A           41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV  120 (144)
T ss_dssp             HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence            36688888888775   45789999999988884 578999999999999999999999999999999999888887777


Q ss_pred             HHHHH
Q 008689          526 KEKMK  530 (557)
Q Consensus       526 ~~~~~  530 (557)
                      ..++.
T Consensus       121 e~~i~  125 (144)
T 1y8m_A          121 EDKIQ  125 (144)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=98.05  E-value=2.8e-05  Score=89.05  Aligned_cols=111  Identities=15%  Similarity=0.123  Sum_probs=91.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC-
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-  479 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p-  479 (557)
                      .+...|..++..|+|++|+.+|.+|-                       -|..+|.||.++|+|++|++.+++|...++ 
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA~-----------------------ny~rLA~tLvkLge~q~AIEaarKA~n~~aW 1253 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNVS-----------------------NFGRLASTLVHLGEYQAAVDGARKANSTRTW 1253 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhhh-----------------------HHHHHHHHHHHhCCHHHHHHHHHHhCCHHHH
Confidence            45679999999999999999999872                       177899999999999999999999855432 


Q ss_pred             ------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          480 ------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       480 ------------------------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                                              .++..+..++..|..+|.|++|+..|++++.++|.+..+..+|..+..+-+-.+-
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pekl 1332 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKM 1332 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHH
Confidence                                    1444566778889999999999999999999999998888888887666544443

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=98.03  E-value=5.1e-06  Score=85.68  Aligned_cols=88  Identities=14%  Similarity=0.093  Sum_probs=74.2

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~  131 (557)
                      .+..||.|+|+|+++ .||..|+++..  .++.|.+|.++  + |+++|.||++|++++|.+..              ++
T Consensus       154 ~a~~gD~V~id~~~~-~dG~~~~~~~~--~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~vtF--------------aG  213 (433)
T 3gty_X          154 PAEAGDLVRVNMEVY-NEEGKKLTSRE--YEYVISEDEDR--P-FVKDLVGKKKGDVVEIEREY--------------EG  213 (433)
T ss_dssp             CCCTTSEEEEEEEEE-CTTSCEEEEEE--EEEECCSSCCC--T-THHHHTTCCTTCEEEEEEEE--------------TT
T ss_pred             ccCCCCEEEEEEEEE-ECCEECcCCCC--CCeEEEecCCc--h-HHHHhCCCCCCceEEEEEee--------------CC
Confidence            578999999999998 49999998754  68888999887  3 99999999999999999854              24


Q ss_pred             CcEEEEEEEEEeeeccccccccceeeee
Q 008689          132 ATLQFDVELLSWTSVKDICKDGGIIKKI  159 (557)
Q Consensus       132 ~~l~~~v~l~~~~~~~d~~~d~~~~~~i  159 (557)
                      .+..|.|+|.+++.......+..+++.+
T Consensus       214 k~a~F~VtV~~Ik~~~lPEldDEfak~~  241 (433)
T 3gty_X          214 KKYTYKLEVEEVYKRTLPEIGDELAKSV  241 (433)
T ss_dssp             EEEEEEEEEEEEEEECCCCSSHHHHHTT
T ss_pred             CeEEEEEEEEEEEEecCCcccHHHHHHh
Confidence            7999999999999877777777777654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.02  E-value=3.7e-05  Score=66.08  Aligned_cols=94  Identities=16%  Similarity=0.019  Sum_probs=80.8

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      .+++.+|+..|++|++.-.  ...               .  +|.+|.....+++|+.+++++.+.  .++.|++++|.+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~--~~a---------------~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~   66 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNE--MFG---------------C--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   66 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TTH---------------H--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCC--Hhh---------------h--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHH
Confidence            3679999999999997642  111               3  899999999999999999999987  789999999999


Q ss_pred             HHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          492 YIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       492 ~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      |..    .+++++|+++|++|.+.  .+..+...|..+...
T Consensus        67 y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~  105 (138)
T 1klx_A           67 YENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYA  105 (138)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHH
T ss_pred             HHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHC
Confidence            999    89999999999999987  677788888887665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.98  E-value=1.9e-05  Score=80.78  Aligned_cols=109  Identities=17%  Similarity=0.136  Sum_probs=65.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC-
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS-  479 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p-  479 (557)
                      .+...|+.++..|+|++|..+|.++        +.               |.++|.|+.++|+|++|++.+.++.  ++ 
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n---------------~~~LA~~L~~Lg~yq~AVea~~KA~--~~~  178 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SN---------------FGRLASTLVHLGEYQAAVDGARKAN--STR  178 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TC---------------HHHHHHHHHTTTCHHHHHHHHHHHT--CHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hh---------------HHHHHHHHHHhccHHHHHHHHHHcC--Cch
Confidence            4555666666666666666666644        11               4556666666666666666666551  11 


Q ss_pred             --------------------------CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          480 --------------------------RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       480 --------------------------~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                                                .++.-+..+...|.+.|++++|+..|++++.+++....+..+|..+..+.+-.+
T Consensus       179 ~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k  258 (449)
T 1b89_A          179 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK  258 (449)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             hHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHH
Confidence                                      122234455678999999999999999999999999999999988876665444


Q ss_pred             H
Q 008689          534 K  534 (557)
Q Consensus       534 ~  534 (557)
                      -
T Consensus       259 ~  259 (449)
T 1b89_A          259 M  259 (449)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=97.96  E-value=8.4e-05  Score=78.24  Aligned_cols=93  Identities=18%  Similarity=0.054  Sum_probs=48.1

Q ss_pred             hhhHHHHHHHHH----cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh----hhCHHHHHHHH
Q 008689          400 GKKKEQGNTLFK----AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLC  471 (557)
Q Consensus       400 ~~~k~~G~~~~~----~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~  471 (557)
                      ..+...|..++.    .+++.+|+..|++|++...                 ..++++||.+|..    .+++++|+.++
T Consensus        76 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~-----------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~  138 (490)
T 2xm6_A           76 PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGL-----------------PQAQQNLGVMYHEGNGVKVDKAESVKWF  138 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            445556666666    6677777777777665311                 1123445555544    44555555555


Q ss_pred             HHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHh
Q 008689          472 TKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEI  511 (557)
Q Consensus       472 ~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l  511 (557)
                      ++++..  .++.+++++|.+|..    .+++++|++.|+++.+.
T Consensus       139 ~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~  180 (490)
T 2xm6_A          139 RLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ  180 (490)
T ss_dssp             HHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence            554443  344455555555544    44455555555554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.89  E-value=6.1e-05  Score=77.42  Aligned_cols=121  Identities=14%  Similarity=0.144  Sum_probs=87.2

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-----------------C-ChHHHHH-HH----------
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-----------------F-GDEEKKQ-AK----------  444 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~-----------------~-~~~~~~~-~~----------  444 (557)
                      ........+.+.|..|++.|+|++|+..|.+++.+.+....                 . ..++... .+          
T Consensus        50 ~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~  129 (434)
T 4b4t_Q           50 RRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREK  129 (434)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSS
T ss_pred             HhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhC
Confidence            33445567889999999999999999999999887553211                 0 0111100 00          


Q ss_pred             --HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc------CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          445 --ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL------DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       445 --~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~------~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                        .++..++.++|.+|..+|+|.+|+..+.+++..      .+....++...+.+|..+++|++|+..|++++.+.+.
T Consensus       130 ~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~  207 (434)
T 4b4t_Q          130 RVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANS  207 (434)
T ss_dssp             CCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhc
Confidence              023567788888888888898888888888764      2334678888888888889999998888888888543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.86  E-value=0.00021  Score=62.20  Aligned_cols=118  Identities=12%  Similarity=0.092  Sum_probs=88.9

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-ChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-GDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ..+++....++..+.|+.|+-.+..++.+...+... +.       .....++..+|..++..++|..|+..|++||.+.
T Consensus        21 ~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp-------~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~   93 (167)
T 3ffl_A           21 MNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSP-------PQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK   93 (167)
T ss_dssp             CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccH-------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence            346788889999999999999999999987665542 22       3345557889999999999999999999997642


Q ss_pred             C---CC----------------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          479 S---RN----------------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       479 p---~~----------------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      .   .+                      ...-|+.|.||.+++++++|+..++..-. .-.+..+...|+++
T Consensus        94 k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~-k~Rt~kvnm~LakL  164 (167)
T 3ffl_A           94 KALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS-RQRTPKINMLLANL  164 (167)
T ss_dssp             HCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG-GGCCHHHHHHHHHH
T ss_pred             HHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc-hhcCHHHHHHHHHH
Confidence            1   11                      25779999999999999999998765311 12344555566555

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.85  E-value=0.00011  Score=75.47  Aligned_cols=102  Identities=8%  Similarity=-0.031  Sum_probs=83.2

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+...|..++..|+|.+|+..+.+++.........         .....++++++.+|..+++|.+|...+++++...
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK---------PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS---------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            3455678888999999999999999988877654432         4567789999999999999999999999998753


Q ss_pred             C---CC----hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          479 S---RN----VKALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       479 p---~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                      +   ..    ...+...|..|...++|++|..+|..++
T Consensus       206 ~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          206 NSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             hcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            2   22    4567788999999999999999998875

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.84  E-value=0.00032  Score=69.87  Aligned_cols=114  Identities=12%  Similarity=-0.015  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHc---CcHHHHHHHHHHHHHHhhhcCCC-----------------ChHHHHHHHHH------------HHH
Q 008689          402 KKEQGNTLFKA---GKYARASKRYEKAVKYIEYDTSF-----------------GDEEKKQAKAL------------KVA  449 (557)
Q Consensus       402 ~k~~G~~~~~~---~~y~~A~~~y~~Al~~~~~~~~~-----------------~~~~~~~~~~~------------~~~  449 (557)
                      +.-+|..++.+   ..+.+|+.+|.+|+++.|.....                 .......+...            ...
T Consensus       199 l~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~  278 (372)
T 3ly7_A          199 NFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSI  278 (372)
T ss_dssp             HHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHH
Confidence            34444555443   45789999999999988753211                 11111111111            122


Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      +|.-+|.+++..+++++|+..+++|+.++| ++-+|..+|.++...|++++|++.|.+|+.++|...
T Consensus       279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          279 IYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            344567778889999999999999999996 577889999999999999999999999999999875

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.83  E-value=7.3e-05  Score=78.02  Aligned_cols=121  Identities=17%  Similarity=0.027  Sum_probs=68.0

Q ss_pred             hhHHHHHHHHHcC---cHHHHHHHHHHHHHHhhhcCCC--------------ChHHHHHHH------HHHHHHHhhHHHH
Q 008689          401 KKKEQGNTLFKAG---KYARASKRYEKAVKYIEYDTSF--------------GDEEKKQAK------ALKVACNLNNAAC  457 (557)
Q Consensus       401 ~~k~~G~~~~~~~---~y~~A~~~y~~Al~~~~~~~~~--------------~~~~~~~~~------~~~~~~~~nla~~  457 (557)
                      .+...|..+.+.|   ++.+|+..|++|++..+.....              ..+..+...      .-...+++|+|.+
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~  257 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQL  257 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            4667888888889   9999999999998764432210              000000000      1112334555555


Q ss_pred             -H--HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          458 -K--LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-----DLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       458 -~--~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-----~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                       |  ...+++++|+.+++++++.  .++.|++++|.+|. .|     ++++|+.+|++|.   |++..+...|..+..
T Consensus       258 ~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~  329 (452)
T 3e4b_A          258 LYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYR  329 (452)
T ss_dssp             HHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHH
T ss_pred             HHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHH
Confidence             3  3455666666666665543  35566666666655 33     5666666666655   555555555554433

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.82  E-value=8.2e-05  Score=85.31  Aligned_cols=107  Identities=12%  Similarity=-0.042  Sum_probs=83.0

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC--hHHHHHHH-----HHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG--DEEKKQAK-----ALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~--~~~~~~~~-----~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      +.|..+.+.|.|++|+..|+++-.........-  -..+++..     -....+|+++|.++.++|+|++|+..|.++  
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-- 1131 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-- 1131 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc--
Confidence            348999999999999999999754322100000  00111111     123667999999999999999999999886  


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                         ++..+|++.|.++.++|+|++|++.|.+|.+..++.
T Consensus      1132 ---dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~ 1167 (1630)
T 1xi4_A         1132 ---DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES 1167 (1630)
T ss_pred             ---CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc
Confidence               788999999999999999999999999999998653

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.76  E-value=0.00019  Score=62.06  Aligned_cols=78  Identities=15%  Similarity=0.102  Sum_probs=63.4

Q ss_pred             HhhhHHHHHHHHHcC---cHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAG---KYARASKRYEKAVKYI-EYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       399 a~~~k~~G~~~~~~~---~y~~A~~~y~~Al~~~-~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      ....++.|..+.+.+   ++++|+..+...++.. |              ..+..|++|||..|+++++|++|+++|+++
T Consensus        32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p--------------~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~l   97 (152)
T 1pc2_A           32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSK--------------EEQRDYVFYLAVGNYRLKEYEKALKYVRGL   97 (152)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCH--------------HHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCc--------------cchHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            356677888888877   7789999999888764 2              124456899999999999999999999999


Q ss_pred             HccCCCChHHHHHHHH
Q 008689          475 LDLDSRNVKALYRRAQ  490 (557)
Q Consensus       475 l~~~p~~~ka~~~~g~  490 (557)
                      |+++|+|..|..-+-.
T Consensus        98 L~ieP~n~QA~~Lk~~  113 (152)
T 1pc2_A           98 LQTEPQNNQAKELERL  113 (152)
T ss_dssp             HHHCTTCHHHHHHHHH
T ss_pred             HhcCCCCHHHHHHHHH
Confidence            9999999888665443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.76  E-value=0.00012  Score=70.00  Aligned_cols=87  Identities=15%  Similarity=-0.004  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh-----hCHHHHHHHHHHHHccCCCC-hHHHHHH
Q 008689          415 YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL-----KDYKQAEKLCTKVLDLDSRN-VKALYRR  488 (557)
Q Consensus       415 y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~-----~~~~~A~~~~~~al~~~p~~-~ka~~~~  488 (557)
                      ...|...+.+|+++.|..             +.-.+|.-++..|.+.     |+.++|..++++||+++|+. ..+++..
T Consensus       179 l~~A~a~lerAleLDP~~-------------~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~Y  245 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSY-------------QEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITY  245 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTH-------------HHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCc-------------ccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence            566777777777776641             2345688999999996     99999999999999999975 9999999


Q ss_pred             HHHHHhc-CCHHHHHHHHHHHHHhCCC
Q 008689          489 AQAYIQM-ADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       489 g~a~~~l-g~~~~A~~~~~~al~l~p~  514 (557)
                      |..++.. +++++|.+.+++|+..+|.
T Consensus       246 A~~l~~~~gd~~~a~~~L~kAL~a~p~  272 (301)
T 3u64_A          246 ADALCIPLNNRAGFDEALDRALAIDPE  272 (301)
T ss_dssp             HHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence            9999985 9999999999999998877

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.69  E-value=0.00017  Score=75.21  Aligned_cols=75  Identities=20%  Similarity=0.076  Sum_probs=63.3

Q ss_pred             HHHHhhHHHHHHhhh-----CHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHH
Q 008689          448 VACNLNNAACKLKLK-----DYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDV  518 (557)
Q Consensus       448 ~~~~~nla~~~~k~~-----~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~  518 (557)
                      ..+++|||.+|. .|     ++++|+.++.++.   +.++.|++++|.+|..    ..++++|+.+|++|.+.  .+..+
T Consensus       283 ~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A  356 (452)
T 3e4b_A          283 PRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSA  356 (452)
T ss_dssp             HHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTH
T ss_pred             HHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHH
Confidence            345789999998 55     9999999999999   8999999999999988    45999999999999875  45557


Q ss_pred             HHHHHHHHHH
Q 008689          519 KLEYKTLKEK  528 (557)
Q Consensus       519 ~~~l~~l~~~  528 (557)
                      ...|..+...
T Consensus       357 ~~~Lg~~y~~  366 (452)
T 3e4b_A          357 DFAIAQLFSQ  366 (452)
T ss_dssp             HHHHHHHHHS
T ss_pred             HHHHHHHHHh
Confidence            7777777554

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.48  E-value=0.00024  Score=69.44  Aligned_cols=99  Identities=12%  Similarity=0.026  Sum_probs=78.1

Q ss_pred             HHHHHHHcC--cHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc-----
Q 008689          405 QGNTLFKAG--KYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL-----  477 (557)
Q Consensus       405 ~G~~~~~~~--~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~-----  477 (557)
                      .+...+..|  +++.|...|.++....+...             ...+++|   |++++|+|++|...++.+++.     
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~~~-------------~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPTWK-------------TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCSHH-------------HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCCcc-------------cHHHHHH---HHHHcCCHHHHHHHHHHHHHhccccc
Confidence            343345445  89999999999876544200             1112444   899999999999999988876     


Q ss_pred             -----CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689          478 -----DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLE  521 (557)
Q Consensus       478 -----~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~  521 (557)
                           +|+|+.++.++..+...+|+  +|.+.+.++.+++|+++.+...
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~  292 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHH  292 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHH
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHH
Confidence                 58999999999999999998  9999999999999999865543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.42  E-value=0.0007  Score=64.82  Aligned_cols=66  Identities=11%  Similarity=0.043  Sum_probs=57.6

Q ss_pred             CHHHHHHHHHHHHccCCC--ChHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH
Q 008689          463 DYKQAEKLCTKVLDLDSR--NVKALYRRAQAYIQM-----ADLDLAEFDIKKALEIDPDN-RDVKLEYKTLKEK  528 (557)
Q Consensus       463 ~~~~A~~~~~~al~~~p~--~~ka~~~~g~a~~~l-----g~~~~A~~~~~~al~l~p~n-~~~~~~l~~l~~~  528 (557)
                      ....|....++|+++||+  +..||..+|..|..+     |+.++|+++|++|++++|+. .++...+..-...
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~  251 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCI  251 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH
Confidence            478899999999999999  677999999999996     99999999999999999975 7777777665433

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.29  E-value=0.00084  Score=69.29  Aligned_cols=94  Identities=9%  Similarity=-0.036  Sum_probs=72.5

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      -+..+..+.+.|..|..+|+|++|+.+|.+++......-...       .......++|||..|..+|+|++|+.++.+|
T Consensus       325 h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~-------Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A  397 (429)
T 3qwp_A          325 NIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS-------HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA  397 (429)
T ss_dssp             SHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC-------ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            345788899999999999999999999999999865422111       1345667899999999999999999999999


Q ss_pred             Hcc-----CCCC---hHHHHHHHHHHHhc
Q 008689          475 LDL-----DSRN---VKALYRRAQAYIQM  495 (557)
Q Consensus       475 l~~-----~p~~---~ka~~~~g~a~~~l  495 (557)
                      +++     .|++   ...+.+++.++..+
T Consensus       398 l~i~~~~lG~~Hp~~~~~~~~l~~~~~e~  426 (429)
T 3qwp_A          398 FDIMRVTHGREHSLIEDLILLLEECDANI  426 (429)
T ss_dssp             HHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence            874     4555   44455566666543

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.29  E-value=0.00083  Score=65.61  Aligned_cols=122  Identities=7%  Similarity=-0.031  Sum_probs=86.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC-
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR-  480 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~-  480 (557)
                      +.-.|..++..|++++|++.+.+++...+..             ....++.-++.+++++++.+.|.+.+++..+.+|+ 
T Consensus       103 ~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~-------------~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~  169 (310)
T 3mv2_B          103 LYLLATAQAILGDLDKSLETCVEGIDNDEAE-------------GTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDT  169 (310)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHTSSCST-------------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhccCCCc-------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence            3477888999999999999999987654310             02334667788999999999999999998888883 


Q ss_pred             ---ChHHHHHHHHH--HHhcC--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 008689          481 ---NVKALYRRAQA--YIQMA--DLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEA  537 (557)
Q Consensus       481 ---~~ka~~~~g~a--~~~lg--~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~  537 (557)
                         +...+..++.+  .+..|  ++.+|...|+++....|+.......+. +..++.+..+.++
T Consensus       170 ~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln-~~~~~g~~~eAe~  232 (310)
T 3mv2_B          170 VSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN-LHLQQRNIAEAQG  232 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH-HHHHHTCHHHHHH
T ss_pred             cccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH-HHHHcCCHHHHHH
Confidence               23445555555  66666  899999999998887776333333344 5555555555554

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.20  E-value=0.0051  Score=62.54  Aligned_cols=113  Identities=12%  Similarity=-0.002  Sum_probs=94.9

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKL  470 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~  470 (557)
                      ....+...|......++...|+..|.+|+.+.....       .+...+...+...+..+...++.+++.++++.+|+..
T Consensus       114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~  193 (388)
T 2ff4_A          114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE  193 (388)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            345556667777778999999999999999864321       1223456677788888899999999999999999999


Q ss_pred             HHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 008689          471 CTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALE  510 (557)
Q Consensus       471 ~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~  510 (557)
                      +.+++..+|-+..++..+-.||...|+..+|++.|+++-.
T Consensus       194 l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          194 LEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988754

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.19  E-value=0.0011  Score=68.28  Aligned_cols=80  Identities=11%  Similarity=-0.013  Sum_probs=64.8

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      +..+..+.+.|..|..+|+|++|+.+|++|+......-...       .......++|||.+|..+|+|++|+.++++|+
T Consensus       337 p~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~-------Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          337 VYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY-------SLNVASMWLKLGRLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS-------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC-------ChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence            45678888999999999999999999999999865432111       13356668999999999999999999999998


Q ss_pred             cc-----CCCCh
Q 008689          476 DL-----DSRNV  482 (557)
Q Consensus       476 ~~-----~p~~~  482 (557)
                      ++     .|+++
T Consensus       410 ~i~~~~lG~~Hp  421 (433)
T 3qww_A          410 AIMEVAHGKDHP  421 (433)
T ss_dssp             HHHHHHTCTTCH
T ss_pred             HHHHHHcCCCCh
Confidence            74     46664

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.16  E-value=0.00075  Score=53.46  Aligned_cols=68  Identities=19%  Similarity=0.145  Sum_probs=57.3

Q ss_pred             HhhhHHHHHHHHHcCc---HHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGK---YARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~---y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      +..+...|..++-.++   ..+|...+++|+.+.|.+..               .++.+|..+++.++|++|+.++++++
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r---------------A~~~lg~~~~~~g~y~~Ai~~w~~~l   70 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA---------------ALSLIANDHFISFRFQEAIDTWVLLL   70 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4456677888875555   79999999999999887653               36789999999999999999999999


Q ss_pred             ccCCCC
Q 008689          476 DLDSRN  481 (557)
Q Consensus       476 ~~~p~~  481 (557)
                      ..+|.+
T Consensus        71 ~~~p~~   76 (93)
T 3bee_A           71 DSNDPN   76 (93)
T ss_dssp             TCCCTT
T ss_pred             hhCCCC
Confidence            999984

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=96.73  E-value=0.0052  Score=62.88  Aligned_cols=140  Identities=14%  Similarity=0.071  Sum_probs=100.1

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC------CCChHHHHHHHH------HHHHHHhhHHHHHHh
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT------SFGDEEKKQAKA------LKVACNLNNAACKLK  460 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~------~~~~~~~~~~~~------~~~~~~~nla~~~~k  460 (557)
                      ..-...+..+...|..+++.|+|+.|+..|.+|........      ...  +......      ....-...+..+|.+
T Consensus       142 ~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~--ef~lA~~~~l~L~~~ad~l~~lv~~Yek  219 (449)
T 1b89_A          142 KLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK--EFRLAQMCGLHIVVHADELEELINYYQD  219 (449)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTT--CHHHHHHTTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcC--cHHHHHHHHHHHHhCHhhHHHHHHHHHH
Confidence            34445677888999999999999999999999943210000      000  0000000      000012246678999


Q ss_pred             hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHHHHHHH
Q 008689          461 LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ--MADLDLAEFDIKKALEIDP-----DNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       461 ~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~--lg~~~~A~~~~~~al~l~p-----~n~~~~~~l~~l~~~~~~~~  533 (557)
                      .|+|++|+..++++|.+++.+.-.+..+|.+|.+  .++..++++.|...+.+.|     ++...+.++.-+.....+..
T Consensus       220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d  299 (449)
T 1b89_A          220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD  299 (449)
T ss_dssp             TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence            9999999999999999999999999999998887  4678889998888888877     67667777777766665555


Q ss_pred             H
Q 008689          534 K  534 (557)
Q Consensus       534 ~  534 (557)
                      .
T Consensus       300 ~  300 (449)
T 1b89_A          300 N  300 (449)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3gty_X Trigger factor, TF; chaperone-client complex, cell cycle, cell division, chapero isomerase, rotamase, ribonucleoprotein, binding; 3.40A {Thermotoga maritima} PDB: 3gu0_A

Probab=96.65  E-value=0.0035  Score=64.46  Aligned_cols=72  Identities=18%  Similarity=0.123  Sum_probs=59.6

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCC
Q 008689          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAV  245 (557)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~i  245 (557)
                      .+..||.|+++|.+.. +|..|+++  .++.+.+|++.  + |+++|.||+.|+.+.|.+    .|              
T Consensus       154 ~a~~gD~V~id~~~~~-dG~~~~~~~~~~~~l~~g~~~--~-fe~~liG~k~Ge~~~~~v----tF--------------  211 (433)
T 3gty_X          154 PAEAGDLVRVNMEVYN-EEGKKLTSREYEYVISEDEDR--P-FVKDLVGKKKGDVVEIER----EY--------------  211 (433)
T ss_dssp             CCCTTSEEEEEEEEEC-TTSCEEEEEEEEEECCSSCCC--T-THHHHTTCCTTCEEEEEE----EE--------------
T ss_pred             ccCCCCEEEEEEEEEE-CCEECcCCCCCCeEEEecCCc--h-HHHHhCCCCCCceEEEEE----ee--------------
Confidence            4678999999999884 88888866  56677788777  3 999999999999999998    23              


Q ss_pred             CCCCeEEEEEEeecccc
Q 008689          246 PPNATLQIALELVSWKT  262 (557)
Q Consensus       246 p~~~~l~~~v~l~~~~~  262 (557)
                       +|.+..|.|+|.++..
T Consensus       212 -aGk~a~F~VtV~~Ik~  227 (433)
T 3gty_X          212 -EGKKYTYKLEVEEVYK  227 (433)
T ss_dssp             -TTEEEEEEEEEEEEEE
T ss_pred             -CCCeEEEEEEEEEEEE
Confidence             2568899999999865

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.55  E-value=0.061  Score=58.62  Aligned_cols=144  Identities=10%  Similarity=0.036  Sum_probs=91.7

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+....+.+++++|...|.+++..++..       ...+++....+..-...++...+....+.+..+.|...+.+|+.
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45555567889999999999999875311       11112222222222334566667777778888889998888887


Q ss_pred             c-CCCChHHHHHHHHHHHhcCC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          477 L-DSRNVKALYRRAQAYIQMAD-LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       477 ~-~p~~~ka~~~~g~a~~~lg~-~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      . .+...+.|...|..-...++ ++.|++.|+++++..|++......+......+.+. ..-+..|.+......
T Consensus       463 ~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~-~~AR~lferal~~~~  535 (679)
T 4e6h_A          463 LKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEE-SQVKSLFESSIDKIS  535 (679)
T ss_dssp             TGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCH-HHHHHHHHHHTTTSS
T ss_pred             hcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcC
Confidence            7 44556777666666666554 88888888888888888887765555544333222 233446666555443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.49  E-value=0.017  Score=47.89  Aligned_cols=44  Identities=20%  Similarity=0.204  Sum_probs=38.1

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ  490 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~  490 (557)
                      +-.|++.||..|+|+++|..|+.+|+.+|+.+|+|..|.--+..
T Consensus        73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~  116 (126)
T 1nzn_A           73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL  116 (126)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            55668899999999999999999999999999999887654433

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.39  E-value=0.046  Score=46.18  Aligned_cols=43  Identities=14%  Similarity=0.219  Sum_probs=37.2

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g  489 (557)
                      +-.|++.||..|+|+++|..|+.+|+.+|+.+|+|..|.--+.
T Consensus        76 ~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~  118 (144)
T 1y8m_A           76 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  118 (144)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            4556889999999999999999999999999999977755443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=96.36  E-value=0.016  Score=50.41  Aligned_cols=94  Identities=17%  Similarity=0.159  Sum_probs=62.1

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChH----HHH--H----HHHHHHHHHhhHHHHHHhhhCHHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE----EKK--Q----AKALKVACNLNNAACKLKLKDYKQA  467 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~----~~~--~----~~~~~~~~~~nla~~~~k~~~~~~A  467 (557)
                      .+..+...|+.+|.+++|.+|...|++||.+..........    ...  .    ...--..+.+.+|.||.+++++++|
T Consensus        62 ~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~A  141 (167)
T 3ffl_A           62 KYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDA  141 (167)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHH
Confidence            46778899999999999999999999999876532110000    000  0    0000123467899999999999999


Q ss_pred             HHHHHHHHccCCCChHHHHHHHHHH
Q 008689          468 EKLCTKVLDLDSRNVKALYRRAQAY  492 (557)
Q Consensus       468 ~~~~~~al~~~p~~~ka~~~~g~a~  492 (557)
                      +.....+-. .-..++...-+|+.|
T Consensus       142 i~~Le~Ip~-k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          142 IAILDGIPS-RQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHHTSCG-GGCCHHHHHHHHHHC
T ss_pred             HHHHhcCCc-hhcCHHHHHHHHHHh
Confidence            998776422 234567766666654

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.35  E-value=0.04  Score=45.96  Aligned_cols=44  Identities=14%  Similarity=0.206  Sum_probs=38.1

Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQ  490 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~  490 (557)
                      +-.|++.||..|+|+|+|..|+.+|+.+|+.+|+|..|.--+..
T Consensus        77 ~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           77 RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            45668899999999999999999999999999999887654443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.03  E-value=0.029  Score=61.12  Aligned_cols=134  Identities=15%  Similarity=0.063  Sum_probs=93.8

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDSR  480 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p~  480 (557)
                      +...++...+.++.+.|...|.+|+...+... .             .+|...|....+.+ +++.|...+.++|+..|+
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-~-------------~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~  502 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-P-------------DIYLENAYIEYHISKDTKTACKVLELGLKYFAT  502 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-T-------------HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-h-------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC
Confidence            33444455567788999999999988733221 1             12445565555654 499999999999999999


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCC
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD---NRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMNTG  550 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~---n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~~~  550 (557)
                      +...+...+.....+++.+.|+..|++|+...|+   ...+...+........... ..++.+++|...+.+.
T Consensus       503 ~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~-~~~~v~~R~~~~~P~~  574 (679)
T 4e6h_A          503 DGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLN-SVRTLEKRFFEKFPEV  574 (679)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSH-HHHHHHHHHHHHSTTC
T ss_pred             chHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHhCCCC
Confidence            9988888888888899999999999999999884   3345555544444333222 2345667777665543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.66  E-value=0.17  Score=43.17  Aligned_cols=113  Identities=12%  Similarity=0.013  Sum_probs=82.1

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      +..+..+-..|+-+-. +-.++-+..|.+|+..+|.....       ...-.+.++.+.|.- ..+++.++|.+.|+.++
T Consensus        17 ~~yl~llE~~g~p~~d-~~l~rlrd~YerAia~~Pp~k~~-------~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           17 LSLLLKLEKNSVPLSD-ALLNKLIGRYSQAIEALPPDKYG-------QNESFARIQVRFAEL-KAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             HHHHHHHHHHTCSCCH-HHHHHHHHHHHHHHHHSCGGGGT-------TCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCchh-hHHHHHHHHHHHHHHcCCccccc-------cHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHH
Confidence            3444433333443222 23367789999999988765311       112344445555544 67799999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      .++...+|.|...|+=-..+|+...|++.+.+|+.+.|...+
T Consensus        88 ~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           88 ANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            988888888888899889999999999999999999998753

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.41  E-value=0.1  Score=57.04  Aligned_cols=60  Identities=18%  Similarity=0.171  Sum_probs=53.5

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                      ++.-.|.-.+..++|+.|+..+++|...-|.....|++++.||..+++|+.|+-.++.+-
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            344456677789999999999999999999999999999999999999999998888763

>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A

Probab=94.96  E-value=0.26  Score=47.56  Aligned_cols=116  Identities=15%  Similarity=0.091  Sum_probs=77.8

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH----HHHHHHHHHH--
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY----KQAEKLCTKV--  474 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~----~~A~~~~~~a--  474 (557)
                      ...+.|-.++..|+|.+|+..|+..+..++.....+.++.++++++...|..-+-.+-+.+.+=    +...+.++-+  
T Consensus       116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lELAAY  195 (325)
T 3mv2_A          116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLELAAY  195 (325)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH
Confidence            3456899999999999999999999999987766667777777777666654444433333211    1112222222  


Q ss_pred             ---HccCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          475 ---LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       475 ---l~~~p~~~ka~~~~g-~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                         ..+.|.+.---.|.| ....+.++|.-|....++.|++.|..+
T Consensus       196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~  241 (325)
T 3mv2_A          196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP  241 (325)
T ss_dssp             GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH
T ss_pred             hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH
Confidence               233444433333444 446778999999999999999999754

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.87  E-value=0.25  Score=49.74  Aligned_cols=98  Identities=14%  Similarity=0.008  Sum_probs=79.0

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC---CC
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD---SR  480 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~---p~  480 (557)
                      ..|..|+..|+|.+|+..+.+.++.+.....         ..+.+.+|......|..++++.++...+.+|....   +.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd---------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~  174 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDD---------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC  174 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC---------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence            6789999999999999999999998875332         25677778889999999999999999999986542   12


Q ss_pred             C----hHHHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 008689          481 N----VKALYRRAQAYI-QMADLDLAEFDIKKALE  510 (557)
Q Consensus       481 ~----~ka~~~~g~a~~-~lg~~~~A~~~~~~al~  510 (557)
                      +    .+...--|..|+ ..++|..|-.+|-.+++
T Consensus       175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~  209 (394)
T 3txn_A          175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE  209 (394)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence            2    233344588899 89999999999998874

>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=94.87  E-value=0.88  Score=43.88  Aligned_cols=114  Identities=16%  Similarity=0.285  Sum_probs=79.9

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh--hCH-----HHHHHHHHHH
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL--KDY-----KQAEKLCTKV  474 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~--~~~-----~~A~~~~~~a  474 (557)
                      ..+.|-.++..|+|.+|+..|+..+..++.....+.++.++++++...|..-+-.+-+.+  ++.     +...+.++-+
T Consensus       105 ~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR~lELA  184 (320)
T 3mkr_B          105 RLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKRICEMA  184 (320)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHHHHHHH
Confidence            457899999999999999999999999987777777788888887766665544433333  221     2333333333


Q ss_pred             -----HccCCCChHHHHHHH-HHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          475 -----LDLDSRNVKALYRRA-QAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       475 -----l~~~p~~~ka~~~~g-~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                           ..+.|.|.---.|.| ....+.++|.-|-...++.|++.|..
T Consensus       185 AYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~  231 (320)
T 3mkr_B          185 AYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP  231 (320)
T ss_dssp             HHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH
T ss_pred             HHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH
Confidence                 234454433333444 34677899999999999999998864

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=94.86  E-value=0.22  Score=49.54  Aligned_cols=69  Identities=10%  Similarity=-0.029  Sum_probs=53.3

Q ss_pred             HHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          474 VLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       474 al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      ++..+|.++.+|..+|.++...|++++|+..+++|+.++|+ ......+..+.....+.++... .|.+.|
T Consensus       269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e-~~~~Al  337 (372)
T 3ly7_A          269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAAD-AYLTAF  337 (372)
T ss_dssp             TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHH-HHHHHH
T ss_pred             hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHH-HHHHHH
Confidence            45678999999999999999999999999999999999975 5556677777666655555443 444444

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.42  E-value=0.25  Score=50.60  Aligned_cols=100  Identities=12%  Similarity=-0.011  Sum_probs=79.1

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc---
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL---  477 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~---  477 (557)
                      .+...|..+++.|++..|++.|.++...+....            .++.++.++..+++..++|..|..+++++..+   
T Consensus       133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~------------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~  200 (429)
T 4b4t_R          133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG------------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEK  200 (429)
T ss_dssp             CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC------------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH------------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhc
Confidence            467899999999999999999999988765432            14566888889999999999999999998553   


Q ss_pred             CCCC---hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          478 DSRN---VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       478 ~p~~---~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      .++.   .+.....|.+++..++|.+|-..|..++.-.
T Consensus       201 ~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~  238 (429)
T 4b4t_R          201 GGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATF  238 (429)
T ss_dssp             CCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccC
Confidence            2222   2344456888889999999999998877543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.39  E-value=0.28  Score=46.21  Aligned_cols=70  Identities=11%  Similarity=0.117  Sum_probs=62.6

Q ss_pred             HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ...++.++.++|+..+...++-+|.|.+.-..+.+.++-.|+|+.|.+-++.+.+++|+.......++.+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~l   74 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHL   74 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            3467889999999999999999999999999999999999999999999999999999987655555444

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=93.86  E-value=1  Score=47.02  Aligned_cols=119  Identities=13%  Similarity=0.000  Sum_probs=80.7

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh---------HHHHHH----------------HHHHHHHHhhHH
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD---------EEKKQA----------------KALKVACNLNNA  455 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~---------~~~~~~----------------~~~~~~~~~nla  455 (557)
                      -+...+..+.+.|+.+.|...|.+|+.. |.+....-         +....+                ......++.+.+
T Consensus       215 lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~  293 (493)
T 2uy1_A          215 VYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHL  293 (493)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHH
Confidence            3555667777889999999999999998 65432100         000000                011224566666


Q ss_pred             HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCCCHHHHHH
Q 008689          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMA-DLDLAEFDIKKALEIDPDNRDVKLE  521 (557)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg-~~~~A~~~~~~al~l~p~n~~~~~~  521 (557)
                      ....+.+..+.|...+.+| ...+.....|...|..-..++ +.+.|+..|+.+++..|+++.....
T Consensus       294 ~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~  359 (493)
T 2uy1_A          294 NYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEE  359 (493)
T ss_dssp             HHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHH
Confidence            6667788999999999999 433334566666666666566 5999999999999999988755433

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=93.80  E-value=0.42  Score=41.39  Aligned_cols=69  Identities=16%  Similarity=0.082  Sum_probs=54.2

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHc--c---------------CCCChHHHH-HHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLD--L---------------DSRNVKALY-RRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~--~---------------~p~~~ka~~-~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      .+--+.||.++++|..|+......|.  .               ||.+-..++ -+|..+..+|+-+||+..|......+
T Consensus        65 ~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~  144 (242)
T 3kae_A           65 KYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGKS  144 (242)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCCc
Confidence            33578999999999999999999993  2               233333333 57999999999999999999999888


Q ss_pred             CCCHHHH
Q 008689          513 PDNRDVK  519 (557)
Q Consensus       513 p~n~~~~  519 (557)
                      |=-..+.
T Consensus       145 ~lf~~vE  151 (242)
T 3kae_A          145 FLFSPVE  151 (242)
T ss_dssp             CCHHHHH
T ss_pred             cccchHH
Confidence            7655444

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=93.41  E-value=2.1  Score=42.96  Aligned_cols=134  Identities=13%  Similarity=0.043  Sum_probs=91.3

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh-------------------hcCCCChH---------HHHH---HHHH
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE-------------------YDTSFGDE---------EKKQ---AKAL  446 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~-------------------~~~~~~~~---------~~~~---~~~~  446 (557)
                      .=....+.|..|.+.|++++-.........++.                   ..+...+.         +|..   ..-+
T Consensus        18 ~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~fl   97 (394)
T 3txn_A           18 KEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFL   97 (394)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345677889999999999888777765443322                   11111111         1111   1123


Q ss_pred             HHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCC------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC---CCCHH
Q 008689          447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSR------NVKALYRRAQAYIQMADLDLAEFDIKKALEID---PDNRD  517 (557)
Q Consensus       447 ~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~---p~n~~  517 (557)
                      +..+-..||..|+..++|.+|+..+++.+..-..      -...+....+.|..++++.+|.+.|.+|....   +.++.
T Consensus        98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~  177 (394)
T 3txn_A           98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK  177 (394)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence            5556668999999999999999999998763211      25567788999999999999999999998663   35566


Q ss_pred             HHHHHHHHHHHHHH
Q 008689          518 VKLEYKTLKEKMKE  531 (557)
Q Consensus       518 ~~~~l~~l~~~~~~  531 (557)
                      +...+..+.-.+..
T Consensus       178 i~a~i~~~~Gi~~l  191 (394)
T 3txn_A          178 VQGALDLQSGILHA  191 (394)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhHHHH
Confidence            66666666555544

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=92.73  E-value=0.82  Score=47.53  Aligned_cols=83  Identities=12%  Similarity=0.010  Sum_probs=72.4

Q ss_pred             HHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          446 LKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       446 ~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ....|+.+||....-...+..|..+|.+|+.+.|++..+|..+|..+...++.-+|+-+|-+++....-.+.+...+..+
T Consensus       150 ~~hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~  229 (497)
T 1ya0_A          150 ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHH
Confidence            34557778888888888999999999999999999999999999999999999999999999998877777777777766


Q ss_pred             HHH
Q 008689          526 KEK  528 (557)
Q Consensus       526 ~~~  528 (557)
                      -.+
T Consensus       230 f~~  232 (497)
T 1ya0_A          230 LSK  232 (497)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=92.53  E-value=0.26  Score=37.56  Aligned_cols=40  Identities=23%  Similarity=0.171  Sum_probs=35.1

Q ss_pred             ChHH-HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689          391 NTEE-KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (557)
Q Consensus       391 ~~~e-~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~  430 (557)
                      +..+ .++.|..+..+|...-+.|+|++|+.+|.+|++++-
T Consensus         2 ~~~~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   42 (83)
T 2v6y_A            2 SAQVMLEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLS   42 (83)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            4445 677899999999999999999999999999999864

>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1

Probab=91.54  E-value=0.58  Score=38.21  Aligned_cols=44  Identities=25%  Similarity=0.307  Sum_probs=37.5

Q ss_pred             cCCChH-HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          388 WDMNTE-EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       388 ~~~~~~-e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ..|+.. +.++.|..+..+|...-+.++|++|+.+|..|++++-.
T Consensus         6 ~~m~~~~~~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~   50 (117)
T 2cpt_A            6 SGMSSTSPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLH   50 (117)
T ss_dssp             CCSCCCCHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ccCCccHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence            345555 67788999999999999999999999999999998654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=90.64  E-value=1.4  Score=45.86  Aligned_cols=127  Identities=8%  Similarity=-0.064  Sum_probs=87.2

Q ss_pred             hhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhh-CHHHHHHHHHHHHccCC
Q 008689          401 KKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLK-DYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       401 ~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~-~~~~A~~~~~~al~~~p  479 (557)
                      .+...+....+.++.+.|...|.+| . .+.   ...           .+|...|..-...+ +++.|...++.+++.-|
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~-~~~---~~~-----------~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~  351 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-G-NEG---VGP-----------HVFIYCAFIEYYATGSRATPYNIFSSGLLKHP  351 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-T-TSC---CCH-----------HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-h-CCC---CCh-----------HHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence            3445555555677899999999999 3 221   111           13444565555566 59999999999999889


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      +.+..+...+.-...+|+.+.|+..|+++    +....+...+.......... +.-++++.+++..+.
T Consensus       352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~-~~~r~v~~~~~~~~~  415 (493)
T 2uy1_A          352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSM-ELFRELVDQKMDAIK  415 (493)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHhc
Confidence            88887777777788899999999999998    34555666555554444322 233356777776665

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=90.00  E-value=0.49  Score=36.02  Aligned_cols=38  Identities=24%  Similarity=0.155  Sum_probs=34.4

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~  430 (557)
                      ...++.|..+..+|..+-+.|+|++|+.+|.+|++++.
T Consensus        13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~   50 (83)
T 2w2u_A           13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLA   50 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            45668899999999999999999999999999999864

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.64  E-value=4.9  Score=41.14  Aligned_cols=105  Identities=14%  Similarity=0.072  Sum_probs=76.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc-
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD-  476 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~-  476 (557)
                      ++.-....+..++..|+|.+|.........-.-  ....       ...++.+++-....|+..++|..|...++++.. 
T Consensus       136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~--~~~~-------~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~  206 (445)
T 4b4t_P          136 RARVTKDLVEIKKEEGKIDEAADILCELQVETY--GSME-------MSEKIQFILEQMELSILKGDYSQATVLSRKILKK  206 (445)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--SSSC-------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH--hccc-------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            344456788999999999999999888664322  1221       234555677788899999999999999999742 


Q ss_pred             --cCCCC----hHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          477 --LDSRN----VKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       477 --~~p~~----~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                        -.+.+    .+.+.-.|..|.+.++|.+|-.+|..++.-
T Consensus       207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence              12222    334456788899999999999999888753

>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}

Probab=88.45  E-value=1.2  Score=34.00  Aligned_cols=42  Identities=19%  Similarity=0.246  Sum_probs=34.9

Q ss_pred             CChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          390 MNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       390 ~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      |+....++.|..+..+|...-..|+|++|+.+|..|++++-.
T Consensus         4 m~~~~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~   45 (85)
T 2v6x_A            4 MSTGDFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLML   45 (85)
T ss_dssp             CCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            333445678888999999999999999999999999997653

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.41  E-value=0.51  Score=51.58  Aligned_cols=60  Identities=20%  Similarity=0.181  Sum_probs=52.1

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      .-+..++..+..+++|+.|+.+-++|+...|..-               .++..||.||.++++|+.|+-..+-+
T Consensus       338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF---------------~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSF---------------ESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh---------------HHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            3566788889999999999999999999988644               23889999999999999999988877

>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1

Probab=88.32  E-value=2  Score=33.32  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=32.9

Q ss_pred             HHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          395 KIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       395 ~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      .++.|..+..+|..+-+.++|++|+.+|..|++++-.
T Consensus        11 ~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~   47 (93)
T 1wfd_A           11 DSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQ   47 (93)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence            4567888999999999999999999999999998754

>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}

Probab=86.48  E-value=3  Score=31.81  Aligned_cols=35  Identities=17%  Similarity=0.232  Sum_probs=30.3

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhh
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEY  431 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~  431 (557)
                      ..|..+..+|..+-+.|+|++|+.+|..|++++-.
T Consensus        14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~   48 (86)
T 4a5x_A           14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQ   48 (86)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            35677888899999999999999999999998653

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=85.53  E-value=5.2  Score=35.10  Aligned_cols=28  Identities=11%  Similarity=-0.012  Sum_probs=21.2

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHH
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVK  427 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~  427 (557)
                      ..++..|...+.+|+++-|.++|.++-+
T Consensus        35 ~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D   62 (177)
T 3mkq_B           35 ITWERLIQEALAQGNASLAEMIYQTQHS   62 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHhCC
Confidence            4577788888888888888888877554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.52  E-value=5.3  Score=41.55  Aligned_cols=67  Identities=13%  Similarity=0.063  Sum_probs=52.6

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccC-CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNR  516 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--~p~n~  516 (557)
                      .|+.+-.+|.+.|++++|+..+++..+.. ..+...|..+=.+|.+.|++++|.+.|+...+.  .|+..
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~  176 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEP  176 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHH
Confidence            47778888889999999999998876642 236677888888899999999999999887764  55543

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=85.41  E-value=4.9  Score=41.79  Aligned_cols=101  Identities=5%  Similarity=-0.046  Sum_probs=77.1

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC-CC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD-SR  480 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~-p~  480 (557)
                      +...-..+.+.|++++|...|.+..+.-   ...           ....|+.+-.+|.+.|++++|.+.+++..+.. ..
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g---~~P-----------d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~P  173 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFG---IQP-----------RLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVP  173 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTT---CCC-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCC-----------ccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            3445567888999999999998866531   111           12347777888999999999999999987653 23


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCH
Q 008689          481 NVKALYRRAQAYIQMADLDLAEFDIKKALEI--DPDNR  516 (557)
Q Consensus       481 ~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l--~p~n~  516 (557)
                      +...|.-+-.+|.+.|++++|.+.|++..+.  .|+..
T Consensus       174 d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~  211 (501)
T 4g26_A          174 EEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKS  211 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHH
T ss_pred             CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHH
Confidence            5677888999999999999999999998764  56543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.15  E-value=3.5  Score=38.69  Aligned_cols=63  Identities=14%  Similarity=0.102  Sum_probs=49.7

Q ss_pred             HHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChH
Q 008689          406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVK  483 (557)
Q Consensus       406 G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~k  483 (557)
                      ...+++.++.+.|+......++-.|.+...               ...+...+.-.|+|+.|...++.+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~---------------R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHH---------------HHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            356889999999999999999987765522               223445555679999999999999999998744

>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=84.63  E-value=7.4  Score=31.26  Aligned_cols=74  Identities=11%  Similarity=0.085  Sum_probs=58.9

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc-------CCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-------TSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~-------~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (557)
                      .....|-.+.++|...-..|+-+.|+.+|++++..+...       +....+.++....+..+...||..+.-+++..+.
T Consensus        17 ~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~   96 (116)
T 2dl1_A           17 EAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEK   96 (116)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            445667788888888888999999999999999887542       1244678999999999999999999888876655


Q ss_pred             H
Q 008689          467 A  467 (557)
Q Consensus       467 A  467 (557)
                      .
T Consensus        97 ~   97 (116)
T 2dl1_A           97 G   97 (116)
T ss_dssp             H
T ss_pred             c
Confidence            3

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=83.50  E-value=4  Score=42.35  Aligned_cols=81  Identities=10%  Similarity=-0.057  Sum_probs=68.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      ...+...|...--+..+..|...|.+|+.+.|.....               |+.||..+.-.+++-.|+-+|.++|...
T Consensus       152 hr~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~---------------~nqLavla~~~~~~l~a~y~y~rsl~~~  216 (497)
T 1ya0_A          152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQP---------------YNQLAILASSKGDHLTTIFYYCRSIAVK  216 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHH---------------HHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCch---------------HHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence            3456778888888889999999999999999987754               8899999999999999999999999887


Q ss_pred             CCChHHHHHHHHHHHh
Q 008689          479 SRNVKALYRRAQAYIQ  494 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~  494 (557)
                      .....|.-++...+.+
T Consensus       217 ~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          217 FPFPAASTNLQKALSK  232 (497)
T ss_dssp             BCCHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHH
Confidence            7777777777776654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=83.25  E-value=2.3  Score=49.37  Aligned_cols=105  Identities=10%  Similarity=0.008  Sum_probs=73.6

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh--HHHHHHH------HHHHHHHhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD--EEKKQAK------ALKVACNLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~--~~~~~~~------~~~~~~~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      .-.|..++..|++++|..+|.+|..-+........  .......      .....-|+.++..+-+.+.++.+++.+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            56789999999999999999998654332221111  1111110      112344667778888899999999999999


Q ss_pred             HccCCCCh---H--HHHHHHHHHHhcCCHHHHHHHHHH
Q 008689          475 LDLDSRNV---K--ALYRRAQAYIQMADLDLAEFDIKK  507 (557)
Q Consensus       475 l~~~p~~~---k--a~~~~g~a~~~lg~~~~A~~~~~~  507 (557)
                      |+..+.+.   +  .|.+.-++++.+++|++|-..+..
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~  963 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMV  963 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHh
Confidence            98654332   2  578899999999999999777643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=82.02  E-value=5.1  Score=43.90  Aligned_cols=24  Identities=17%  Similarity=0.043  Sum_probs=17.0

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKV  474 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~a  474 (557)
                      +.++|..+++.++++.|+..|.++
T Consensus       684 W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          684 WRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            556777777777777777777765

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.91  E-value=2  Score=44.42  Aligned_cols=68  Identities=13%  Similarity=0.014  Sum_probs=55.9

Q ss_pred             HHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC--C---ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          448 VACNLNNAACKLKLKDYKQAEKLCTKVLDLDS--R---NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       448 ~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p--~---~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      ..+++-+-..|+..+.|++|....+++.--..  .   .+..+|..|+++...++|.+|.++|..|+...|.+
T Consensus       231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~  303 (523)
T 4b4t_S          231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN  303 (523)
T ss_dssp             HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred             HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence            44565667899999999999999999953221  1   16678889999999999999999999999988765

>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1

Probab=81.42  E-value=8.1  Score=29.50  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=32.7

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~  432 (557)
                      ++.|..+-.++..+.+.|+|++||.+..+|+.++...
T Consensus        12 Ln~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eA   48 (97)
T 2crb_A           12 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   48 (97)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence            5568888899999999999999999999999987653

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=80.87  E-value=5.5  Score=33.29  Aligned_cols=61  Identities=18%  Similarity=0.093  Sum_probs=43.6

Q ss_pred             HhhHHHHHHh-hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          451 NLNNAACKLK-LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       451 ~~nla~~~~k-~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      |.++|.-++- +++-++--+.++..+..++-++..++.+|.||.++|+..+|.+.+++|-+-
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            5566665543 344444444444445666778999999999999999999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	557
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	1e-35
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	2e-19
d1r9ha_	118	d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabd	3e-18
d1kt1a1	168	a.118.8.1 (A:254-421) FKBP51, C-terminal domain {M	2e-33
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	5e-32
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	3e-18
d1kt1a2	111	d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Mo	4e-15
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	7e-32
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-19
d1q1ca1	120	d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Hu	2e-17
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-30
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	6e-22
d1kt1a3	115	d.26.1.1 (A:139-253) FKBP51, N-terminal domains {M	1e-19
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	2e-29
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	4e-14
d1yata_	113	d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeas	6e-14
d1p5qa1	170	a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal d	3e-29
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	3e-29
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	8e-16
d2ppna1	107	d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12)	1e-12
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	6e-29
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-18
d1pbka_	116	d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId:	2e-14
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	1e-26
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	9e-21
d1q1ca2	117	d.26.1.1 (A:141-257) FKBP52, N-terminal domains {H	8e-16
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	2e-25
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	3e-12
d1q6ha_	210	d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase	6e-10
d2fbna1	153	a.118.8.1 (A:22-174) Putative 70 kda peptidylproly	2e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	4e-24
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	6e-12
d1fd9a_	204	d.26.1.1 (A:) Macrophage infectivity potentiator p	3e-09
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	8e-23
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	5e-11
d1u79a_	125	d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis tha	2e-10
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	4e-22
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-11
d1jvwa_	160	d.26.1.1 (A:) Macrophage infectivity potentiator p	1e-07
d1ihga1	169	a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos tau	8e-19
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	1e-17
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	8e-05
d1ix5a_	151	d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcu	0.001
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	7e-17
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	4e-06
d1hxva_	85	d.26.1.1 (A:) Trigger factor PPIase domain {Mycopl	2e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	3e-13
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-10
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	5e-08
d1a17a_	159	a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo	7e-12
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	4e-10
d1elra_	128	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	4e-10
d1elwa_	117	a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9	7e-09
d2hr2a1	156	a.118.8.8 (A:2-157) Hypothetical protein CT2138 {C	1e-07
d1nzna_	122	a.118.8.1 (A:) Mitochondria fission protein Fis1 {	3e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-07
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	5e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	2e-06
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	5e-05
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	2e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	5e-06
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	3e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	7e-04
d1hh8a_	192	a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-	1e-05
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	2e-05
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	6e-04

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score =  127 bits (320), Expect = 1e-35
 Identities = 62/111 (55%), Positives = 78/111 (70%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            + G+ K + KEG+G   P  G  V+VHY GTL +GT+FDSSRDR   F F LG+GNVIK
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTS 145
           GWD+G+ TM KGE A FTI  +  YG++GSPP IP  ATL F+VEL  W++
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDAGSPPKIPGGATLIFEVELFEWSA 118

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 81.7 bits (201), Expect = 2e-19
 Identities = 43/113 (38%), Positives = 56/113 (49%), Gaps = 5/113 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D  V+K I KEG G  +P  G  VKV  +G L++GT F      +    F F      VI
Sbjct: 9   DGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSS--RDRGDQFSFNLGRGNVI 66

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSF 381
            G D  V TM K EVA  TI  +Y +G A S      +P  +T+ +EVEL  +
Sbjct: 67  KGWDLGVATMTKGEVAEFTIRSDYGYGDAGSPP---KIPGGATLIFEVELFEW 116

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 78.6 bits (193), Expect = 3e-18
 Identities = 34/115 (29%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           KDGG++K I KEG+    P     V V+Y   LE+G     +             G+   
Sbjct: 8   KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIK 67

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TM KGE     ++  YG+G+      G+   +P  ATL   +EL  W 
Sbjct: 68  GWDLGVATMTKGEVAEFTIRSDYGYGDA-----GSPPKIPGGATLIFEVELFEWS 117

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 168

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  123 bits (308), Expect = 2e-33
 Identities = 66/163 (40%), Positives = 104/163 (63%)

Query: 385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAK 444
           KESW+M+T+EK+E A   KE+G   FK GKY +A  +Y K V ++E +    ++E K ++
Sbjct: 1   KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASE 60

Query: 445 ALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFD 504
           +  +A  LN A C LKL++Y +A + C K L LDS N K LYRR +A + M + + A+ D
Sbjct: 61  SFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGD 120

Query: 505 IKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM 547
            +K LE++P N+  +L+    ++K KE+N+++ + Y NMF K 
Sbjct: 121 FEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMFKKF 163

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  117 bits (293), Expect = 5e-32
 Identities = 58/108 (53%), Positives = 74/108 (68%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           ++G+ K + + G G +TP  GD V VHY G L +G +FDSS DR+ PF F++G+G VIK 
Sbjct: 3   DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKA 62

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           WDIG+ TMKKGE       PE AYG +GS P IP NATL F+VELL +
Sbjct: 63  WDIGVATMKKGEICHLLCKPEYAYGATGSLPKIPSNATLFFEVELLDF 110

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 78.3 bits (192), Expect = 3e-18
 Identities = 42/115 (36%), Positives = 59/115 (51%), Gaps = 5/115 (4%)

Query: 268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQV 327
            D+ V+K + + G G E P  G  V V   GKL +G  F      +  + F F   + QV
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSS--HDRNEPFVFSIGKGQV 59

Query: 328 IDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           I   D  V TMKK E+  L   PEYA+G+  S      +P N+T+ +EVEL+ F+
Sbjct: 60  IKAWDIGVATMKKGEICHLLCKPEYAYGATGSLP---KIPSNATLFFEVELLDFK 111

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 111

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 69.4 bits (169), Expect = 4e-15
 Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMV----VGKADGVEFTVKDGHFCP 206
           KD G++K + + G   E P   D V V+Y  +L +G        + +   F++  G    
Sbjct: 2   KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIK 61

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
                V TMKKGE   L  KP+Y +G  G         +P NATL   +EL+ +K
Sbjct: 62  AWDIGVATMKKGEICHLLCKPEYAYGATGS-----LPKIPSNATLFFEVELLDFK 111

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (293), Expect = 7e-32
 Identities = 63/109 (57%), Positives = 74/109 (67%)

Query: 35  GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIK 94
            ++G+ K + +EG G + P  GD V VHYTG LLDGT+FDSS DR   F F LG+G VIK
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 95  GWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            WDI I TMK GE    T  PE AYG +GSPP IPPNATL F+VEL  +
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSAGSPPKIPPNATLVFEVELFEF 117

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 82.1 bits (202), Expect = 2e-19
 Identities = 48/116 (41%), Positives = 63/116 (54%), Gaps = 5/116 (4%)

Query: 269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVI 328
           D+ V+K I +EG G E P  G  V V   G L DGT F      + +  F F   + +VI
Sbjct: 10  DEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDS--SLDRKDKFSFDLGKGEVI 67

Query: 329 DGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKE 384
              D A+ TMK  EV  +T  PEYA+GSA S      +PPN+T+ +EVEL  F+ E
Sbjct: 68  KAWDIAIATMKVGEVCHITCKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKGE 120

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 120

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.3 bits (187), Expect = 2e-17
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 9/115 (7%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVK----DGHFCP 206
           +D G++K I +EG   E P   D V V+Y   L DG     +   +         G    
Sbjct: 9   QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIK 68

Query: 207 TLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
               A+ TMK GE   +  KP+Y +G       G+   +PPNATL   +EL  +K
Sbjct: 69  AWDIAIATMKVGEVCHITCKPEYAYGSA-----GSPPKIPPNATLVFEVELFEFK 118

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score =  113 bits (284), Expect = 1e-30
 Identities = 31/114 (27%), Positives = 53/114 (46%), Gaps = 4/114 (3%)

Query: 31  EKEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG 90
           E  + + G+ ++  + GEG+  P  G  V++H  G    G  FD      T  +      
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGR-CGGRVFDCRDVAFTVGEGEDHD- 59

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSW 143
            +  G D  ++ M++ E  +  + P   +GE+G P   I PNA L ++V L S+
Sbjct: 60  -IPIGIDKALEKMQREEQCILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSF 112

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 89.0 bits (220), Expect = 6e-22
 Identities = 33/119 (27%), Positives = 63/119 (52%), Gaps = 7/119 (5%)

Query: 265 EITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE 324
           ++ +D  +I++  + G+G+  PNEGA V++ L G+        +     +      + ++
Sbjct: 3   DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGG-----RVFDCRDVAFTVGEGED 57

Query: 325 EQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
             +  G+D+A+  M++ E  +L + P Y FG  E+ +    + PN+ + YEV L SFEK
Sbjct: 58  HDIPIGIDKALEKMQREEQCILHLGPRYGFG--EAGKPKFGIEPNAELIYEVTLKSFEK 114

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]} Length = 115

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

 Score = 82.4 bits (203), Expect = 1e-19
 Identities = 33/116 (28%), Positives = 60/116 (51%), Gaps = 5/116 (4%)

Query: 147 KDICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD-GVEFTVKDGHFC 205
           +D+ +DGGII++  + GE + NP +   V ++ E R    +   +         +D    
Sbjct: 2   EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRCGGRVFDCRDVAFTVGEGEDHDIP 61

Query: 206 PTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
             + KA++ M++ E+ +L + P+YGFGE GK     +  + PNA L   + L S++
Sbjct: 62  IGIDKALEKMQREEQCILHLGPRYGFGEAGKP----KFGIEPNAELIYEVTLKSFE 113

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (274), Expect = 2e-29
 Identities = 56/110 (50%), Positives = 70/110 (63%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E+    +K   +  G+G   P+ GD V +HYTGTL +G +FDSS DR +PF+  +G G V
Sbjct: 2   EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQV 61

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLS 142
           IKGWD+GI  +  GE A  TIP   AYG  G P  IPPN+TL FDVELL 
Sbjct: 62  IKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFPGLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.7 bits (162), Expect = 4e-14
 Identities = 26/112 (23%), Positives = 45/112 (40%), Gaps = 9/112 (8%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGV----EFTVKDGHFCPT 207
           +G +    +  G+    PK  D V ++Y   LE+G     +       +  +  G     
Sbjct: 5   EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKG 64

Query: 208 LAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
               +  +  GEK  L +   Y +G +G       G +PPN+TL   +EL+ 
Sbjct: 65  WDVGIPKLSVGEKARLTIPGPYAYGPRGFP-----GLIPPNSTLVFDVELLK 111

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 113

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.9 bits (160), Expect = 6e-14
 Identities = 35/117 (29%), Positives = 53/117 (45%), Gaps = 6/117 (5%)

Query: 264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTD 323
           SE+ +   V    +  GDG   P  G +V +   G L++G  F      +    F+    
Sbjct: 1   SEVIEGN-VKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSS--VDRGSPFQCNIG 57

Query: 324 EEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
             QVI G D  +  +   E A LTI   YA+G         ++PPNST+ ++VEL+ 
Sbjct: 58  VGQVIKGWDVGIPKLSVGEKARLTIPGPYAYGPRGFP---GLIPPNSTLVFDVELLK 111

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (277), Expect = 3e-29
 Identities = 65/162 (40%), Positives = 107/162 (66%)

Query: 387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKAL 446
           SW+MN+EEK+E +   KE+G   FK GKY +A  +Y+K V ++EY++SF +EE ++A+AL
Sbjct: 1   SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQAL 60

Query: 447 KVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIK 506
           ++A +LN A C LKL+ +  A + C K L+LDS N K L RR +A++ + D +LA  D +
Sbjct: 61  RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQ 120

Query: 507 KALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN 548
           K L++ P+N+  K +    +++++    +E K Y NMF ++ 
Sbjct: 121 KVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 162

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  109 bits (272), Expect = 3e-29
 Identities = 54/106 (50%), Positives = 70/106 (66%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           G++ + +  G+G   P+ G    VHYTG L DG +FDSSRDR+ PFKF LG+  VI+GW+
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
            G+  M  G+ A  TI P+ AYG +G P  IPP+ATL FDVELL  
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGATGHPGIIPPHATLVFDVELLKL 106

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (174), Expect = 8e-16
 Identities = 34/111 (30%), Positives = 56/111 (50%), Gaps = 5/111 (4%)

Query: 272 VIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGL 331
           V  + +  GDG   P  G    V   G L+DG  F         + F+F   +++VI G 
Sbjct: 2   VQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRD--RNKPFKFMLGKQEVIRGW 59

Query: 332 DRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +  V  M   + A LTI+P+YA+G+        ++PP++T+ ++VEL+  E
Sbjct: 60  EEGVAQMSVGQRAKLTISPDYAYGATGHP---GIIPPHATLVFDVELLKLE 107

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (150), Expect = 1e-12
 Identities = 27/112 (24%), Positives = 47/112 (41%), Gaps = 9/112 (8%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLA 209
           G+  + +  G+    PK     +V+Y   LEDG     +       +F +          
Sbjct: 1   GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWE 60

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + V  M  G++  L + P Y +G       G+ G +PP+ATL   +EL+  +
Sbjct: 61  EGVAQMSVGQRAKLTISPDYAYGAT-----GHPGIIPPHATLVFDVELLKLE 107

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 6e-29
 Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 8/113 (7%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQG 90
              K ++K+G+  + P+ GD V   YTGTL DGT FD++          + P  F +G G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 91  NVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSP-PTIPPNATLQFDVELLS 142
            VI+GWD  + TM KGE A   I PE AYG+ G P   IPPNA L F+VEL+ 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVD 114

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.1 bits (194), Expect = 2e-18
 Identities = 45/117 (38%), Positives = 61/117 (52%), Gaps = 7/117 (5%)

Query: 271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEE-----QLFEFKTDEE 325
           K  K +LK+GD    P +G VV     G LQDGTVF     +  +     +   FK    
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +VI G D A++TM K E A L I PE+A+G        A +PPN+ + +EVELV  +
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID 116

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]} Length = 116

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (165), Expect = 2e-14
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 15/117 (12%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-----------MVVGKADGVEFTVKDG 202
              K +LK+G+K   PK  D V   Y   L+DG                A  + F V  G
Sbjct: 2   KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVG 61

Query: 203 HFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVS 259
                  +A+ TM KGEK  L ++P++ +G+KG+     +  +PPNA L   +ELV 
Sbjct: 62  KVIRGWDEALLTMSKGEKARLEIEPEWAYGKKGQP----DAKIPPNAKLTFEVELVD 114

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  102 bits (254), Expect = 1e-26
 Identities = 31/117 (26%), Positives = 53/117 (45%), Gaps = 4/117 (3%)

Query: 33  EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNV 92
           E  + G+ +++   GEG+  P  G  VEV   G   D                     ++
Sbjct: 4   EEEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRF---EIGEGENLDL 60

Query: 93  IKGWDIGIKTMKKGENAVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVKD 148
             G +  I+ M+KGE+++  + P  A+G  G     IPPNA L++++ L S+   K+
Sbjct: 61  PYGLERAIQRMEKGEHSIVYLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 85.6 bits (211), Expect = 9e-21
 Identities = 41/120 (34%), Positives = 67/120 (55%), Gaps = 7/120 (5%)

Query: 267 TDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQ 326
            +D  +I++I   G+G+ +PNEGA+V+V L G  +D     ++   E  +          
Sbjct: 5   EEDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENL-----D 59

Query: 327 VIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEKE 386
           +  GL+RA+  M+K E +++ + P YAFG     +E   +PPN+ + YE+ L SFEK KE
Sbjct: 60  LPYGLERAIQRMEKGEHSIVYLKPSYAFG--SVGKEKFQIPPNAELKYELHLKSFEKAKE 117

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.7 bits (175), Expect = 8e-16
 Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 5/116 (4%)

Query: 151 KDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDG-MVVGKADGVEFTVKDGHFCPTLA 209
           +DGGII++I   GE +  P +   V V  E   +D      +        ++      L 
Sbjct: 6   EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKLFDQRELRFEIGEGENLDLPYGLE 65

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSE 265
           +A++ M+KGE  ++ +KP Y FG  GK     +  +PPNA L+  L L S++   E
Sbjct: 66  RAIQRMEKGEHSIVYLKPSYAFGSVGKE----KFQIPPNAELKYELHLKSFEKAKE 117

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score =  102 bits (254), Expect = 2e-25
 Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 4/108 (3%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
           + GL  ++V+ G+G + P++ D V V+Y GTL+DG +FD+S  R  P  F L    VI G
Sbjct: 106 STGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDG--VIPG 162

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W  G+K +KKG      IPPELAYG++G P  IPPN+TL FDVELL  
Sbjct: 163 WTEGLKNIKKGGKIKLVIPPELAYGKAGVPG-IPPNSTLVFDVELLDV 209

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 63.7 bits (154), Expect = 3e-12
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 9/122 (7%)

Query: 261 KTVSEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEF 320
           K     T    ++ ++++ G G E P +   V V   G L DG  F       E      
Sbjct: 98  KEKGVKTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEP----L 152

Query: 321 KTDEEQVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVS 380
               + VI G    +  +KK     L I PE A+G A        +PPNST+ ++VEL+ 
Sbjct: 153 SFRLDGVIPGWTEGLKNIKKGGKIKLVIPPELAYGKAGVPG----IPPNSTLVFDVELLD 208

Query: 381 FE 382
            +
Sbjct: 209 VK 210

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]} Length = 210

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

 Score = 56.8 bits (136), Expect = 6e-10
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 8/97 (8%)

Query: 167 ENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLAKAVKTMKKGEKVLLA 224
           E PKD D V+VNY+  L DG     +   G   + +     P   + +K +KKG K+ L 
Sbjct: 120 EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLDGVIPGWTEGLKNIKKGGKIKLV 179

Query: 225 VKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           + P+  +G+ G         +PPN+TL   +EL+  K
Sbjct: 180 IPPELAYGKAGV------PGIPPNSTLVFDVELLDVK 210

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} Length = 153

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

 Score = 97.4 bits (241), Expect = 2e-24
 Identities = 51/152 (33%), Positives = 87/152 (57%), Gaps = 1/152 (0%)

Query: 384 EKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDE-EKKQ 442
           +K  +D   EEK+++A   KE+GN  FK  +   A  +Y++A+ +  +   + D+    +
Sbjct: 2   KKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDK 61

Query: 443 AKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
            K ++++CNLN A C  K KDY +A    +KVL +D  NVKALY+   A +    L+ A+
Sbjct: 62  KKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAK 121

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
            ++ KA  ++P+N D++  Y+    K+KE  K
Sbjct: 122 ENLYKAASLNPNNLDIRNSYELCVNKLKEARK 153

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 98.0 bits (243), Expect = 4e-24
 Identities = 40/108 (37%), Positives = 50/108 (46%), Gaps = 3/108 (2%)

Query: 36  NQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKG 95
             GL+ K++  G G   P   D V V YTG L+DGT FDS+     P  F      VI G
Sbjct: 97  PSGLQYKVINSGNGV-KPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATF--QVSQVIPG 153

Query: 96  WDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSW 143
           W   ++ M  G      +P  LAYG       I PN TL F + L+S 
Sbjct: 154 WTEALQLMPAGSTWEIYVPSGLAYGPRSVGGPIGPNETLIFKIHLISV 201

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 62.9 bits (152), Expect = 6e-12
 Identities = 29/118 (24%), Positives = 50/118 (42%), Gaps = 8/118 (6%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     +  K++  G+G  +P +   V V+  G+L DGTVF     S E+          
Sbjct: 94  VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVF----DSTEKTGKPATFQVS 148

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK 383
           QVI G   A+  M       + +    A+G          + PN T+ +++ L+S +K
Sbjct: 149 QVIPGWTEALQLMPAGSTWEIYVPSGLAYGPRSVG---GPIGPNETLIFKIHLISVKK 203

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]} Length = 204

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

 Score = 54.9 bits (131), Expect = 3e-09
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 8/112 (7%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKAD--GVEFTVKDGHFCPTLA 209
             G+  K++  G   +  K  D V V Y  RL DG V    +  G   T +     P   
Sbjct: 97  PSGLQYKVINSGNGVKPGKS-DTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWT 155

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
           +A++ M  G    + V     +G +        G + PN TL   + L+S K
Sbjct: 156 EALQLMPAGSTWEIYVPSGLAYGPRSVG-----GPIGPNETLIFKIHLISVK 202

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 91.9 bits (227), Expect = 8e-23
 Identities = 45/115 (39%), Positives = 55/115 (47%), Gaps = 12/115 (10%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL       G G      G  ++ HY G L +G  FDSS +R  P  F +G G VIKGWD
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 98  I------GIKTMKKGENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELL 141
                  GI  M  G      IPPELAYG+ G+        IPP + L FD+E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 58.0 bits (139), Expect = 5e-11
 Identities = 24/111 (21%), Positives = 42/111 (37%), Gaps = 7/111 (6%)

Query: 275 KILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDE----EQVIDG 330
                G G     +G ++K   +GKL++G VF    +  +   F     E          
Sbjct: 13  CDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGIL 71

Query: 331 LDRAVITMKKNEVALLTIAPEYAFGS--AESQQELAVVPPNSTVHYEVELV 379
               +  M       L I PE A+G   A  +    ++PP S + +++E +
Sbjct: 72  GSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 125

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 56.4 bits (135), Expect = 2e-10
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 11/115 (9%)

Query: 154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVV--GKADGVEFTVKDGHF------- 204
           G+       G           +  +Y  +LE+G V       G   T + G         
Sbjct: 9   GLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWD 67

Query: 205 -CPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELV 258
                +  +  M  G K  L + P+  +G++G    G    +PP + L   +E +
Sbjct: 68  QGILGSDGIPPMLTGGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYI 122

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 91.0 bits (225), Expect = 4e-22
 Identities = 55/143 (38%), Positives = 74/143 (51%), Gaps = 19/143 (13%)

Query: 38  GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWD 97
           GL  + +  G G   P   D+ EVHYTG L DGT FDSSR+R  P  F      VIKGW 
Sbjct: 35  GLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTF--RPNEVIKGWT 92

Query: 98  IGIKTMKKGENAVFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIIK 157
             ++ M++G+     IP +LAYG +G    IPP + L+FDVEL+S               
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGGGMIPPYSPLEFDVELISI-------------- 138

Query: 158 KILKEGEKWENPKDLDEVLVNYE 180
              K+G K    +++DE+L   E
Sbjct: 139 ---KDGGKGRTAEEVDEILRKAE 158

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 60.6 bits (146), Expect = 1e-11
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 10/140 (7%)

Query: 266 ITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE 325
           +     ++ + +  G G   P      +V   G+L+DGTVF     S  E+         
Sbjct: 30  VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVF----DSSRERGKPTTFRPN 85

Query: 326 QVIDGLDRAVITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK 385
           +VI G   A+  M++ +   L I  + A+G         ++PP S + ++VEL+S    K
Sbjct: 86  EVIKGWTEALQLMREGDRWRLFIPYDLAYGVTGGG---GMIPPYSPLEFDVELISI---K 139

Query: 386 ESWDMNTEEKIEAAGKKKEQ 405
           +     T E+++   +K E+
Sbjct: 140 DGGKGRTAEEVDEILRKAEE 159

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]} Length = 160

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 27/132 (20%), Positives = 54/132 (40%), Gaps = 7/132 (5%)

Query: 152 DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKADGVEFTVKDGHF--CPTLA 209
             G++ + +  G     P   D+  V+Y  RL DG V   +                   
Sbjct: 33  PSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWT 92

Query: 210 KAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKTVSEITDD 269
           +A++ M++G++  L +     +G  G       G +PP + L+  +EL+S K   +    
Sbjct: 93  EALQLMREGDRWRLFIPYDLAYGVTGGG-----GMIPPYSPLEFDVELISIKDGGKGRTA 147

Query: 270 KKVIKKILKEGD 281
           ++V + + K  +
Sbjct: 148 EEVDEILRKAEE 159

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} Length = 169

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 81.7 bits (200), Expect = 8e-19
 Identities = 52/161 (32%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD-TSFGDEE 439
           F ++ +    + ++ +  +   K  GNT FK+  +  A K+Y K ++Y+E    +  D +
Sbjct: 9   FPEDADVDLKDVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDAD 68

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499
             + + + ++C LN  ACKLK+ D++ A   C + L++D  N KALYRRAQ +  + + D
Sbjct: 69  GAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYD 128

Query: 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY 540
            A  D+KKA EI P+++ ++ E   +K+K+K    KE   Y
Sbjct: 129 QALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY 169

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 77.9 bits (191), Expect = 1e-17
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 15/102 (14%)

Query: 54  ENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGI 100
           + G +++V Y G L  G  FD+S +                P +F +G+G +I+G++  +
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 101 KTMKKGENAVFTIPPELAYGE--SGSPPTIPPNATLQFDVEL 140
             M+ G+     IP E AYG         IP +A  + D E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 41.0 bits (95), Expect = 8e-05
 Identities = 26/103 (25%), Positives = 45/103 (43%), Gaps = 12/103 (11%)

Query: 287 NEGAVVKVKLIGKLQDGTVF-----------VKKGHSEEEQLFEFKTDEEQVIDGLDRAV 335
           ++G  +KV  IGKL+ G VF                  E +  EF   E Q+I G + AV
Sbjct: 3   DKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAV 62

Query: 336 ITMKKNEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVEL 378
           + M+  +   + I  E A+G   ++  +  +P ++    + E 
Sbjct: 63  LDMEVGDEKTVKIPAEKAYG-NRNEMLIQKIPRDAFKEADFEP 104

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]} Length = 151

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

 Score = 37.9 bits (87), Expect = 0.001
 Identities = 21/124 (16%), Positives = 47/124 (37%), Gaps = 23/124 (18%)

Query: 173 DEVLVNYEARLEDGMVV-----------------GKADGVEFTVKDGHFCPTLAKAVKTM 215
            ++ V+Y  +LE G V                   + + +EF V +G       +AV  M
Sbjct: 6   VKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDM 65

Query: 216 KKGEKVLLAVKPQYGFGEKGKSASGNEG-AVPPNATLQIALELVSWK-----TVSEITDD 269
           + G++  + +  +  +G + +             A  +    +V        T++E+TD+
Sbjct: 66  EVGDEKTVKIPAEKAYGNRNEMLIQKIPRDAFKEADFEPEEGMVILAEGIPATITEVTDN 125

Query: 270 KKVI 273
           +  +
Sbjct: 126 EVTL 129

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 73.5 bits (180), Expect = 7e-17
 Identities = 18/90 (20%), Positives = 35/90 (38%), Gaps = 8/90 (8%)

Query: 53  PENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT 112
             NGD   + +TG + D  +  S+  ++       G  + IKG++ G+  MK  +     
Sbjct: 2   LANGDIAIIDFTGIV-DNKKLASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 113 IPPELAYGESGSPPTIPPNATLQFDVELLS 142
           +     Y           +  + F+V L +
Sbjct: 59  LTFPSDYHVKE-----LQSKPVTFEVVLKA 83

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 43.1 bits (101), Expect = 4e-06
 Identities = 16/95 (16%), Positives = 29/95 (30%), Gaps = 13/95 (13%)

Query: 288 EGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT 347
            G +  +   G + D         S +             I G +  +I MK N+   L 
Sbjct: 4   NGDIAIIDFTGIV-DNKKL--ASASAQNYELTI--GSNSFIKGFETGLIAMKVNQKKTLA 58

Query: 348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE 382
           +     +   E          +  V +EV L + +
Sbjct: 59  LTFPSDYHVKE--------LQSKPVTFEVVLKAIK 85

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]} Length = 85

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

 Score = 37.7 bits (87), Expect = 2e-04
 Identities = 13/94 (13%), Positives = 31/94 (32%), Gaps = 11/94 (11%)

Query: 169 PKDLDEVLVNYEARLEDGMVVGK-ADGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP 227
             + D  ++++   +++  +    A   E T+    F       +  MK  +K  LA+  
Sbjct: 2   LANGDIAIIDFTGIVDNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTF 61

Query: 228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWK 261
              +  K             +  +   + L + K
Sbjct: 62  PSDYHVKE----------LQSKPVTFEVVLKAIK 85

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 19/169 (11%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVK----YIEYDTSFG 436
           F++   ++          A          ++ G    A   Y +A++    + +   +  
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 437 D---EEKKQAKALKVA------------CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN 481
           +   E+   A+A                   N A  K +  + ++A +L  K L++    
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK 530
             A    A    Q   L  A    K+A+ I P   D         ++M+
Sbjct: 339 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (142), Expect = 4e-10
 Identities = 12/67 (17%), Positives = 28/67 (41%)

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
           +  A  + +  D++ AE+ C ++   +  N   L   +  + Q   LD +      A++ 
Sbjct: 3   MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ 62

Query: 512 DPDNRDV 518
           +P   + 
Sbjct: 63  NPLLAEA 69

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.3 bits (129), Expect = 2e-08
 Identities = 10/92 (10%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD 463
           E  +  ++AG +  A +   +  +          +E      L     L  ++   + + 
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWR----------QEPDNTGVL-----LLLSSIHFQCRR 48

Query: 464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM 495
             ++    T  +  +    +A       Y + 
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKER 80

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 5e-08
 Identities = 22/132 (16%), Positives = 41/132 (31%), Gaps = 15/132 (11%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G      G+   A   +EKAV            +     A      +N      + + + 
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTL----------DPNFLDAY-----INLGNVLKEARIFD 220

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           +A     + L L   +       A  Y +   +DLA    ++A+E+ P   D        
Sbjct: 221 RAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANA 280

Query: 526 KEKMKEYNKKEA 537
            ++     + E 
Sbjct: 281 LKEKGSVAEAED 292

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 159

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (148), Expect = 7e-12
 Identities = 31/146 (21%), Positives = 61/146 (41%), Gaps = 15/146 (10%)

Query: 392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACN 451
            +  ++ A + K Q N  FKA         YE A+K+                       
Sbjct: 3   ADGALKRAEELKTQANDYFKAKD-------YENAIKFYSQAIELNPSNAI--------YY 47

Query: 452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEI 511
            N +   L+ + Y  A    T+ ++LD + +K  YRRA + + +     A  D +  +++
Sbjct: 48  GNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKV 107

Query: 512 DPDNRDVKLEYKTLKEKMKEYNKKEA 537
            P ++D K++Y+   + +K+   + A
Sbjct: 108 KPHDKDAKMKYQECNKIVKQKAFERA 133

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 4e-10
 Identities = 35/155 (22%), Positives = 66/155 (42%), Gaps = 17/155 (10%)

Query: 398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAAC 457
           +A + KEQGN LF   KY  A+  Y +A+                          N A C
Sbjct: 3   SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLV---------------AVYYTNRALC 47

Query: 458 KLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD 517
            LK++  +QA   C + L+LD ++VKA +   Q  ++M   D A  ++++A  +  + R 
Sbjct: 48  YLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107

Query: 518 VKLE--YKTLKEKMKEYNKKEAKFYGNMFAKMNTG 550
              +     L+   K+      +   +  +++++ 
Sbjct: 108 NFGDDIPSALRIAKKKRWNSIEERRIHQESELHSY 142

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 4e-10
 Identities = 25/133 (18%), Positives = 49/133 (36%), Gaps = 9/133 (6%)

Query: 399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACK 458
           A K+KE GN  +K   +  A K Y+KA +    + +            + A         
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT--------YITNQAAVYFEKGDYN 55

Query: 459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDV 518
              +  ++A ++  +  +   +  KA  R   +Y +      A     K+L       DV
Sbjct: 56  KCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP-DV 114

Query: 519 KLEYKTLKEKMKE 531
             + +  ++ +KE
Sbjct: 115 LKKCQQAEKILKE 127

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 27/132 (20%), Positives = 53/132 (40%), Gaps = 15/132 (11%)

Query: 397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAA 456
           E   + KE+GN     G    A + Y +A+K   ++                    N +A
Sbjct: 1   EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH---------------VLYSNRSA 45

Query: 457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR 516
              K  DY++A +   K +DL     K   R+A A   +   + A+   ++ L+ + +N 
Sbjct: 46  AYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNP 105

Query: 517 DVKLEYKTLKEK 528
            +K   + ++ +
Sbjct: 106 QLKEGLQNMEAR 117

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} Length = 156

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 25/149 (16%), Positives = 48/149 (32%), Gaps = 14/149 (9%)

Query: 394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLN 453
           +++  A            AG+Y  A+    +A   +E   +   EE          C+  
Sbjct: 4   KEVVGAYLALSDAQRQLVAGEYDEAAANCRRA---MEISHTMPPEEAFDHAGFDAFCHAG 60

Query: 454 NAACKLKLKDYKQAEKLCTKVLDL-----------DSRNVKALYRRAQAYIQMADLDLAE 502
            A     L+ + +A     K L                 + A+Y RA A   +     A 
Sbjct: 61  LAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAM 120

Query: 503 FDIKKALEIDPDNRDVKLEYKTLKEKMKE 531
            + KK +E+  + +      + + E   +
Sbjct: 121 PEFKKVVEMIEERKGETPGKERMMEVAID 149

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} Length = 122

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.4 bits (112), Expect = 3e-07
 Identities = 17/126 (13%), Positives = 41/126 (32%), Gaps = 14/126 (11%)

Query: 407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ 466
           N L       +  K+++                 K  +     C +          D ++
Sbjct: 7   NELVSVEDLLKFEKKFQSEKAA--------GSVSKSTQFEYAWCLVRTR----YNDDIRK 54

Query: 467 AEKLCTKVLDLDSRN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
              L  ++L   S+      ++  A    ++ + + A   ++  L+ +P N   K   + 
Sbjct: 55  GIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114

Query: 525 LKEKMK 530
           + + MK
Sbjct: 115 IDKAMK 120

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 49.0 bits (115), Expect = 5e-07
 Identities = 34/189 (17%), Positives = 60/189 (31%), Gaps = 18/189 (9%)

Query: 360 QQELAVVPPNSTVHYEVELVSFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARAS 419
           + E+  VP   T+  EV L   E+   S  +  +E+ +      E+G      G  A A 
Sbjct: 1   KSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLL---YERGVLYDSLGLRALAR 57

Query: 420 KRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS 479
             + +A+                                 +  ++  A +    VL+LD 
Sbjct: 58  NDFSQALAIRPDM---------------PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 102

Query: 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
               A   R  A        LA+ D+    + DP++    L     ++K+ E   KE   
Sbjct: 103 TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLK 162

Query: 540 YGNMFAKMN 548
                +   
Sbjct: 163 QHFEKSDKE 171

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 39.8 bits (91), Expect = 5e-04
 Identities = 10/67 (14%), Positives = 21/67 (31%)

Query: 449 ACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA 508
                      +    ++ +   T    L     +  +   + Y+ + DLD A    K A
Sbjct: 176 NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLA 235

Query: 509 LEIDPDN 515
           +  +  N
Sbjct: 236 VANNVHN 242

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 16/130 (12%), Positives = 28/130 (21%), Gaps = 17/130 (13%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYK 465
           G    K    +   K    +  YI                    C ++            
Sbjct: 127 GIISNKQTHTSAIVKPQSSSCSYICQH-----------------CLVHLGDIARYRNQTS 169

Query: 466 QAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTL 525
           QAE        L   N +   + A       D     F   +++ +           +  
Sbjct: 170 QAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229

Query: 526 KEKMKEYNKK 535
             K  E   +
Sbjct: 230 LSKALESRDE 239

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 5e-05
 Identities = 12/157 (7%), Positives = 31/157 (19%), Gaps = 33/157 (21%)

Query: 406 GNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEK-----------------KQAKALKV 448
                           Y+K    +  D  +  ++K                 +     + 
Sbjct: 27  AEVWTSRQALQDL---YQKM---LVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRA 80

Query: 449 ACNLNNAACKLK------LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAE 502
             N +     L          Y Q  +    V ++D        +      +        
Sbjct: 81  NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140

Query: 503 FDIKKALEIDPD----NRDVKLEYKTLKEKMKEYNKK 535
                +          +      Y+    + + Y + 
Sbjct: 141 KPQSSSCSYICQHCLVHLGDIARYRNQTSQAESYYRH 177

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.7 bits (112), Expect = 2e-06
 Identities = 12/169 (7%), Positives = 34/169 (20%), Gaps = 18/169 (10%)

Query: 381 FEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG---- 436
             +E    D               +   L +      +  +       +  +        
Sbjct: 160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAF 219

Query: 437 -----------DEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKAL 485
                             +A  +     +      L+   ++ K   ++   +   +  +
Sbjct: 220 FTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTI 279

Query: 486 YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK 534
               +A   +               +DP           L+ K    N 
Sbjct: 280 ILLMRALDPLLYEKETLQYFSTLKAVDPMRAAY---LDDLRSKFLLENS 325

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (108), Expect = 5e-06
 Identities = 12/83 (14%), Positives = 27/83 (32%)

Query: 450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKAL 509
                 A        ++A     + L+L    +++ Y    + I +     A     +AL
Sbjct: 208 LWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEAL 267

Query: 510 EIDPDNRDVKLEYKTLKEKMKEY 532
            +   +R  + E   + E +   
Sbjct: 268 NMQRKSRGPRGEGGAMSENIWST 290

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 3e-04
 Identities = 21/154 (13%), Positives = 44/154 (28%), Gaps = 18/154 (11%)

Query: 380 SFEKEKESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEE 439
           +++K  +  + N            E+G    + G    A   +E AV+           +
Sbjct: 3   TYDKGYQFEEENPLRDHPQP---FEEGLRRLQEGDLPNAVLLFEAAVQQ----------D 49

Query: 440 KKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLD 499
            K  +A            + + +    A     + L+L   N  AL   A ++   +   
Sbjct: 50  PKHMEAW-----QYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQR 104

Query: 500 LAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN 533
            A   ++  L   P    +    +          
Sbjct: 105 QACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGP 138

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 7e-04
 Identities = 9/60 (15%), Positives = 22/60 (36%)

Query: 480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF 539
           R+    +      +Q  DL  A    + A++ DP + +      T + + ++     +  
Sbjct: 17  RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISAL 76

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-05
 Identities = 29/144 (20%), Positives = 51/144 (35%), Gaps = 20/144 (13%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           +G        +  A   +                +   ++        N       LK+ 
Sbjct: 11  EGVLAADKKDWKGALDAFSAV-------------QDPHSRIC-----FNIGCMYTILKNM 52

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKT 524
            +AEK  T+ ++ D     A ++R   Y Q    DLA  D+K+AL     N+ +  +YK 
Sbjct: 53  TEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLI--DYKI 110

Query: 525 LKEKMKEYNKKEAKFYGNMFAKMN 548
           L  + K +  +       M+AK  
Sbjct: 111 LGLQFKLFACEVLYNIAFMYAKKE 134

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 12/70 (17%), Positives = 30/70 (42%), Gaps = 1/70 (1%)

Query: 462 KDYKQAEKLCTKVLDLD-SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
            D +   K+ T +     SR  + LY       ++ +  +A+  +    E + +N+ V  
Sbjct: 52  NDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA 111

Query: 521 EYKTLKEKMK 530
               +++K++
Sbjct: 112 LKSMVEDKIQ 121

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 39.6 bits (92), Expect = 6e-04
 Identities = 12/116 (10%), Positives = 29/116 (25%), Gaps = 15/116 (12%)

Query: 405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY 464
           Q       G+  +A +   +A+K             K A         +         D+
Sbjct: 2   QWKNALSEGQLQQALELLIEAIK----------ASPKDASLR-----SSFIELLCIDGDF 46

Query: 465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL 520
           ++A++   + + L    +    +                    A  +  +    K 
Sbjct: 47  ERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELTKS 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	557
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.95
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.95
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.93
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.93
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.92
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.92
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.92
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.92
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.9
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.9
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.89
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.89
d1q1ca1	120	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.88
d1r9ha_	118	FKB-6, N-terminal domain {Caenorhabditis elegans [	99.88
d1pbka_	116	FKBP25 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.86
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.86
d2ppna1	107	FK-506 binding protein (FKBP12), an immunophilin {	99.86
d1kt1a2	111	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.85
d1yata_	113	Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyc	99.85
d1kt1a3	115	FKBP51, N-terminal domains {Monkey (Saimiri bolivi	99.84
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.82
d1fd9a_	204	Macrophage infectivity potentiator protein (MIP) {	99.81
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1jvwa_	160	Macrophage infectivity potentiator protein (MIP) {	99.8
d1q1ca2	117	FKBP52, N-terminal domains {Human (Homo sapiens) [	99.8
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.79
d1u79a_	125	FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId:	99.78
d1q6ha_	210	Peptidyl-prolyl cis-trans isomerase FkpA {Escheric	99.78
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.7
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.68
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.66
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.56
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.52
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.5
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.45
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.4
d1ix5a_	151	Archaeal FKBP {Archaeon Methanococcus thermolithot	99.3
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.3
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.3
d1hxva_	85	Trigger factor PPIase domain {Mycoplasma genitaliu	99.29
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.25
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.24
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.24
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.22
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.22
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.22
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.19
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.15
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.14
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.13
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.12
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.1
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	99.05
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.03
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.84
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.79
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.78
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.68
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.63
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.63
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.62
d1l1pa_	106	Trigger factor PPIase domain {Escherichia coli [Ta	98.5
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.49
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.49
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.45
d1t11a3	113	Trigger factor PPIase domain {Vibrio cholerae [Tax	98.32
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.27
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.23
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.23
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.15
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.15
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.11
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.98
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.93
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	97.81
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.68
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.27
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.14
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.06
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.91
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	92.79
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	89.42
d1wr0a1	77	Vacuolar sorting protein 4b (VPS4B, SKD1 protein)	88.51
d2crba1	83	Nuclear receptor binding factor 2, NRBF2, N-termin	85.36
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	84.4

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.95  E-value=7.4e-27  Score=210.10  Aligned_cols=166  Identities=40%  Similarity=0.669  Sum_probs=159.3

Q ss_pred             ccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCH
Q 008689          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDY  464 (557)
Q Consensus       385 ~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~  464 (557)
                      ++.|.|+..|+++.+..+++.|+.+|+.|+|.+|+..|.+|+.+++.......+.......+...+|+|+|.||+++++|
T Consensus         1 ~e~~~m~~~E~~~~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~   80 (168)
T d1kt1a1           1 KESWEMDTKEKLEQAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREY   80 (168)
T ss_dssp             CCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CCcccCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhc
Confidence            36899999999999999999999999999999999999999999998888877888888889999999999999999999


Q ss_pred             HHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 008689          465 KQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMF  544 (557)
Q Consensus       465 ~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf  544 (557)
                      .+|+.+|+++|.++|++.++||++|.+|..+|+|++|+.+|++|++++|+|..+...+..+..++.+.++.+++.|++||
T Consensus        81 ~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1          81 TKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhccCC
Q 008689          545 AKMNTG  550 (557)
Q Consensus       545 ~~~~~~  550 (557)
                      .+....
T Consensus       161 ~~~~~~  166 (168)
T d1kt1a1         161 KKFAEQ  166 (168)
T ss_dssp             HHHHTT
T ss_pred             hhhhhc
Confidence            998654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.5e-26  Score=206.99  Aligned_cols=164  Identities=40%  Similarity=0.706  Sum_probs=158.2

Q ss_pred             ccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHH
Q 008689          387 SWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQ  466 (557)
Q Consensus       387 ~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~  466 (557)
                      +|+|+.+++++.|..+++.|+.+|+.|+|+.|+..|++|+++++........+......+...+|+|+|.||+++++|++
T Consensus         1 ~~~~~~~ek~~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~   80 (170)
T d1p5qa1           1 SWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSA   80 (170)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhccc
Confidence            59999999999999999999999999999999999999999999888888888889999999999999999999999999


Q ss_pred             HHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 008689          467 AEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       467 A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~  546 (557)
                      |+.+|+++|.++|+++++|+++|.||..+|+|++|+.+|++|++++|+|+.+...+..+..++.+....+++.|++||.+
T Consensus        81 A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~e~~~~~~~f~~  160 (170)
T d1p5qa1          81 AIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFER  160 (170)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             ccCC
Q 008689          547 MNTG  550 (557)
Q Consensus       547 ~~~~  550 (557)
                      +...
T Consensus       161 ~~~~  164 (170)
T d1p5qa1         161 LAEE  164 (170)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            8643

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.93  E-value=3.5e-26  Score=190.98  Aligned_cols=110  Identities=56%  Similarity=1.009  Sum_probs=105.6

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      .++||+|+++++|+|...|..||.|.+||++++.||++|++|+.++.|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~ip   87 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRDRGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFTIR   87 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEEEC
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccccceeeeeeccCcceeeeeeeeeeeecCCceEEEEEC
Confidence            56899999999999977899999999999999999999999988779999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |++|||+.+.++.||++++|+|+|+|++|.
T Consensus        88 p~laYG~~g~~~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          88 SDYGYGDAGSPPKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEE
T ss_pred             HHHhCCcCCCCCccCcCCcEEEEEEEEEEe
Confidence            999999999988999999999999999985

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.3e-25  Score=187.94  Aligned_cols=111  Identities=57%  Similarity=0.936  Sum_probs=106.1

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      .++||+|+++++|+|...|..||.|.|||++++.||++|++|+++++|+.|.+|.+++++||+++|.+|++|++++|+||
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip   88 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSLDRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHITCK   88 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEESTTSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEeccccccceeeecCCCceeeeeeeeeccccCCcEEEEEEC
Confidence            46999999999999977799999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (557)
                      |++|||+.+.++.||+|++|+|+|+|++|+.
T Consensus        89 ~~laYG~~g~~~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          89 PEYAYGSAGSPPKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             GGGTTTTTCBTTTBCTTCCEEEEEEEEEEEC
T ss_pred             HHHhCCCcCCCCCCCcCCcEEEEEEEEEEeC
Confidence            9999999999889999999999999999863

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-25  Score=183.70  Aligned_cols=107  Identities=50%  Similarity=0.934  Sum_probs=102.1

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCc
Q 008689           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPEL  117 (557)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~  117 (557)
                      |++|+++++|+|...|+.||.|.+||++++.||++|+++++++.|+.|.+|.+++++||++||.+|++|++++|+|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            79999999999966689999999999999999999999988779999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          118 AYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       118 ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |||..+.++.||+|++|+|+|+|++++
T Consensus        81 aYG~~g~~~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHPGIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCCCCCCcCCeEEEEEEEEEEC
Confidence            999999888899999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=3.8e-25  Score=183.74  Aligned_cols=112  Identities=50%  Similarity=0.858  Sum_probs=106.1

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      .+.++|++++++++|+|...|+.||.|.|||++++.||++|++++....|+.|.+|.+++++||++||.+|++|++++++
T Consensus         2 ~~~d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~   81 (113)
T d1yata_           2 EVIEGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSVDRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLT   81 (113)
T ss_dssp             EECGGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEESTTTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEE
T ss_pred             cCccCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccccCCceEeeeeccCceeeehhhhcccccCCCEEEEE
Confidence            35789999999999999666899999999999999999999999988899999999999999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |||++|||+.+.++.||++++|+|+|+|+++.
T Consensus        82 iP~~laYG~~g~~~~IP~~s~Lif~ieLl~I~  113 (113)
T d1yata_          82 IPGPYAYGPRGFPGLIPPNSTLVFDVELLKVN  113 (113)
T ss_dssp             ECGGGTTTTTCBTTTBCTTCCEEEEEEEEEEC
T ss_pred             echHHeecCcCCCCccCcCCeEEEEEEEEEeC
Confidence            99999999999988899999999999999873

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.92  E-value=5.7e-26  Score=187.84  Aligned_cols=110  Identities=53%  Similarity=0.911  Sum_probs=86.0

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEec
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIP  114 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip  114 (557)
                      +++|++|+++++|+|...|..||.|.|||++++.||++|++|+++++|+.|.+|.+++++||+++|.+|++||+++|+||
T Consensus         2 ~d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~ip   81 (111)
T d1kt1a2           2 KDRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSHDRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLCK   81 (111)
T ss_dssp             CSCSCEEEC----CCSCCCCTTCEEEEECCCCSCC------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC-
T ss_pred             CCCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEEecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEEC
Confidence            47899999999999966799999999999999999999999998889999999999999999999999999999999999


Q ss_pred             CCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          115 PELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       115 ~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |++|||+.+.++.||||++|+|+|+|++|+
T Consensus        82 ~~layG~~g~~~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          82 PEYAYGATGSLPKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ---CCCTTTCTTTSCTTCCCEEEEEEEEEE
T ss_pred             HHHhCCCCCCCCcCCcCCeEEEEEEEEEEC
Confidence            999999999888999999999999999874

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.92  E-value=3.8e-24  Score=189.00  Aligned_cols=149  Identities=34%  Similarity=0.507  Sum_probs=137.7

Q ss_pred             ccccCCChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCCh-HHHHHHHHHHHHHHhhHHHHHHhhhC
Q 008689          385 KESWDMNTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGD-EEKKQAKALKVACNLNNAACKLKLKD  463 (557)
Q Consensus       385 ~~~~~~~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~-~~~~~~~~~~~~~~~nla~~~~k~~~  463 (557)
                      ++.|+|+.+++++.|..+++.|+.+|+.|+|.+|+..|.+|+++++....... ........+.+.+|+|+|.||+++++
T Consensus         3 ~~~~~~~~~e~~~~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~   82 (153)
T d2fbna1           3 KSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD   82 (153)
T ss_dssp             CSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc
Confidence            57899999999999999999999999999999999999999999887665443 34566677888999999999999999


Q ss_pred             HHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 008689          464 YKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYN  533 (557)
Q Consensus       464 ~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~  533 (557)
                      |.+|+.+|.++|+++|++++|||++|.+|..+|+|++|+.+|++|++++|+|.++...+..+..++++.+
T Consensus        83 ~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1          83 YPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999999999988886654

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.90  E-value=4.8e-24  Score=196.14  Aligned_cols=110  Identities=36%  Similarity=0.634  Sum_probs=104.2

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ..+++|++|+++++|+| ..|..||.|.|||++++.||++|++++.++.|+.|.+|  ++|+||++||.+|++|++++|+
T Consensus        94 ~~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~--~~i~G~~e~l~~m~~G~~~~~~  170 (204)
T d1fd9a_          94 VVLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVS--QVIPGWTEALQLMPAGSTWEIY  170 (204)
T ss_dssp             EECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGG--GSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EEecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCC--ccchhHHHHhcCCCCCCEEEEE
Confidence            44899999999999999 89999999999999999999999999887889998877  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEeee
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~  145 (557)
                      |||++|||+.+.++.||||++|+|+|+|++|..
T Consensus       171 iP~~laYG~~g~~~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         171 VPSGLAYGPRSVGGPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             ECGGGTTTTCCCSSSCCTTCCEEEEEEEEEEEC
T ss_pred             EChHHCcCCCCCCCCcCcCCcEEEEEEEEEEEc
Confidence            999999999999889999999999999999864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.5e-24  Score=194.85  Aligned_cols=108  Identities=49%  Similarity=0.916  Sum_probs=102.8

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ..+++|++|+++++|+| +.|..||.|.|||++++.||++|++|+.++.|+.|.+|  ++|+||++||.+|++|++++|+
T Consensus       103 ~~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~~--~vi~g~~e~l~~m~~G~k~~~~  179 (210)
T d1q6ha_         103 KTSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRLD--GVIPGWTEGLKNIKKGGKIKLV  179 (210)
T ss_dssp             EECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEGG--GSCHHHHHHGGGSCTTCEEEEE
T ss_pred             EEccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceeccC--ccchhHHHHHhhccCCCEEEEE
Confidence            45899999999999999 99999999999999999999999999988899999997  7999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEee
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWT  144 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~  144 (557)
                      |||++|||+.+.+ .||||++|+|+|+|++|+
T Consensus       180 iP~~laYG~~g~~-~Ippns~Lvfevel~~ik  210 (210)
T d1q6ha_         180 IPPELAYGKAGVP-GIPPNSTLVFDVELLDVK  210 (210)
T ss_dssp             ECGGGTTTTTCBT-TBCTTCCEEEEEEEEEEC
T ss_pred             ECHHHCcCCCCCC-CCCcCCcEEEEEEEEEEC
Confidence            9999999999976 599999999999999874

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.1e-23  Score=173.97  Aligned_cols=106  Identities=47%  Similarity=0.853  Sum_probs=98.6

Q ss_pred             CeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCC-------CCCceEEEccCCcccHHHHHHHcccccccEEE
Q 008689           38 GLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRD-------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAV  110 (557)
Q Consensus        38 g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~-------~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~  110 (557)
                      .+.++|+++|+|...|+.||.|+|||++++.||++||+|..       ..+|+.|.+|.+++++||+++|.+|++||+++
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            47899999999966799999999999999999999999864       34799999999999999999999999999999


Q ss_pred             EEecCCcccCCCCCC-CCCCCCCcEEEEEEEEEe
Q 008689          111 FTIPPELAYGESGSP-PTIPPNATLQFDVELLSW  143 (557)
Q Consensus       111 v~ip~~~ayg~~~~~-~~ip~~~~l~~~v~l~~~  143 (557)
                      |+|||++|||+.+.+ ..||++++|+|+|+|+++
T Consensus        82 ~~ip~~~ayG~~g~~~~~Ipp~s~L~feieLl~v  115 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPDAKIPPNAKLTFEVELVDI  115 (116)
T ss_dssp             EEECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEE
T ss_pred             EEECHHHhCCccCCCCCCcCcCCeEEEEEEEEEE
Confidence            999999999999875 579999999999999987

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.89  E-value=1.4e-23  Score=177.68  Aligned_cols=111  Identities=41%  Similarity=0.712  Sum_probs=102.9

Q ss_pred             eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcc------ccc
Q 008689           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKT------MKK  105 (557)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~g------m~~  105 (557)
                      ...+|||++|+++++|+| ++|+.||.|.|||++++.||++|++|+..+.|+.|.+|.+.+++||++++.+      |++
T Consensus         3 ~~~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~   81 (125)
T d1u79a_           3 FSVSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLT   81 (125)
T ss_dssp             CEECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBT
T ss_pred             cEECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccC
Confidence            456999999999999999 8999999999999999999999999988778999999999999999998865      999


Q ss_pred             ccEEEEEecCCcccCCCCC-----CCCCCCCCcEEEEEEEEEe
Q 008689          106 GENAVFTIPPELAYGESGS-----PPTIPPNATLQFDVELLSW  143 (557)
Q Consensus       106 Ge~~~v~ip~~~ayg~~~~-----~~~ip~~~~l~~~v~l~~~  143 (557)
                      |++++|+|||++|||+.+.     ...||+|++|+|+|||+.+
T Consensus        82 G~k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          82 GGKRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             TCEEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             CCEEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            9999999999999999875     2359999999999999875

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.89  E-value=3.5e-23  Score=182.01  Aligned_cols=114  Identities=42%  Similarity=0.669  Sum_probs=103.3

Q ss_pred             eecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEE
Q 008689           33 EIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFT  112 (557)
Q Consensus        33 ~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~  112 (557)
                      ..+|+||+|+++++|+|...|..||.|.|||++++.||++|++++....|  |.++.+.+++||+++|.+|++|++++|+
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p--~~~~~~~~i~G~~e~l~~M~~Ge~~~v~  107 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKP--TTFRPNEVIKGWTEALQLMREGDRWRLF  107 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSC--EEECGGGSCHHHHHHHTTCCTTCEEEEE
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCc--cccCccccchhHHHHhcCccccceeEEE
Confidence            45899999999999999667899999999999999999999999876667  5556679999999999999999999999


Q ss_pred             ecCCcccCCCCCCCCCCCCCcEEEEEEEEEeeeccc
Q 008689          113 IPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKD  148 (557)
Q Consensus       113 ip~~~ayg~~~~~~~ip~~~~l~~~v~l~~~~~~~d  148 (557)
                      |||++|||..+.++.||+|++|+|+|+|++|.+...
T Consensus       108 iPp~laYG~~g~~~~IPp~s~LifeIeLl~i~~~~~  143 (160)
T d1jvwa_         108 IPYDLAYGVTGGGGMIPPYSPLEFDVELISIKDGGK  143 (160)
T ss_dssp             ECGGGTTTTTCSSSSSCTTCCEEEEEEEEEEGGGCC
T ss_pred             eCHHHCcCCCCCCCCcCcCCcEEEEEEEEEEecCCC
Confidence            999999999998888999999999999999975443

>d1q1ca1 d.26.1.1 (A:21-140) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.8e-22  Score=167.40  Aligned_cols=111  Identities=42%  Similarity=0.613  Sum_probs=103.0

Q ss_pred             CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEE
Q 008689          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (557)
Q Consensus       268 ~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (557)
                      .|+++.++|+++|.|...|..|++|+|||++++.||++|+++.  +.+.|++|.+|.+.+|+||+.+|.+|++||++.|.
T Consensus         9 ~d~gv~~~i~~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~--~~~~p~~f~~g~~~~i~G~~~~l~~M~~Ge~~~~~   86 (120)
T d1q1ca1           9 QDEGVLKVIKREGTGTEMPMIGDRVFVHYTGWLLDGTKFDSSL--DRKDKFSFDLGKGEVIKAWDIAIATMKVGEVCHIT   86 (120)
T ss_dssp             CSSSEEEEEEECCSSSCCCCTTCEEEEEEEEEETTSCEEEEST--TSSSCEEEETTTTSSCHHHHHHHTTCCTTCEEEEE
T ss_pred             CCCCEEEEEEEcccCCcCCCCCCEEEEEEEEEEcCCCEEEecc--ccccceeeecCCCceeeeeeeeeccccCCcEEEEE
Confidence            4899999999999998889999999999999999999999875  36789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (557)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~  383 (557)
                      |+++++||+.++.   ..|||+++|+|+|+|++++.
T Consensus        87 ip~~laYG~~g~~---~~IPp~s~LifeIeLl~v~~  119 (120)
T d1q1ca1          87 CKPEYAYGSAGSP---PKIPPNATLVFEVELFEFKG  119 (120)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEEC
T ss_pred             ECHHHhCCCcCCC---CCCCcCCcEEEEEEEEEEeC
Confidence            9999999999875   36999999999999999863

>d1r9ha_ d.26.1.1 (A:) FKB-6, N-terminal domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKB-6, N-terminal domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.88  E-value=1.4e-22  Score=168.95  Aligned_cols=110  Identities=39%  Similarity=0.632  Sum_probs=102.5

Q ss_pred             CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEE
Q 008689          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLT  347 (557)
Q Consensus       268 ~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~  347 (557)
                      .|+++.++|+++|+|..+|..|++|+|||++++.||++|+++..  .+.|++|.+|.+.+|+||+.+|.+|++||++.|.
T Consensus         8 ~d~Gl~~~il~~G~G~~~p~~gd~V~v~y~~~l~dG~v~dss~~--~~~p~~f~~g~~~vi~G~~~~l~~M~~Ge~~~~~   85 (118)
T d1r9ha_           8 KDGGVLKLIKKEGQGVVKPTTGTTVKVHYVGTLENGTKFDSSRD--RGDQFSFNLGRGNVIKGWDLGVATMTKGEVAEFT   85 (118)
T ss_dssp             CCSSEEEEEEECCBSSCCCCTTCEEEEEEEEEETTSCEEEEHHH--HTSCEEEETTTTSSCHHHHHHHTTCCBTCEEEEE
T ss_pred             CCCCEEEEEEECcCCCCCCCCCCEEEEEEEEEEcCCCEEEEccc--cceeeeeeccCcceeeeeeeeeeeecCCceEEEE
Confidence            48999999999999988899999999999999999999998753  5789999999999999999999999999999999


Q ss_pred             EcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689          348 IAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (557)
Q Consensus       348 i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~  382 (557)
                      ++++++||+.++.   ..|||+++|+|+|+|++|.
T Consensus        86 ipp~laYG~~g~~---~~IPp~s~l~f~IeLl~f~  117 (118)
T d1r9ha_          86 IRSDYGYGDAGSP---PKIPGGATLIFEVELFEWS  117 (118)
T ss_dssp             ECGGGTTTTTCBT---TTBCTTCCEEEEEEEEEEE
T ss_pred             ECHHHhCCcCCCC---CccCcCCcEEEEEEEEEEe
Confidence            9999999999875   3699999999999999875

>d1pbka_ d.26.1.1 (A:) FKBP25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.1e-21  Score=163.39  Aligned_cols=110  Identities=41%  Similarity=0.652  Sum_probs=99.7

Q ss_pred             ceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCC-----CCcccEEEEcCccchhhHHHHHHhccCcCcEEE
Q 008689          271 KVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHS-----EEEQLFEFKTDEEQVIDGLDRAVITMKKNEVAL  345 (557)
Q Consensus       271 ~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~-----~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~  345 (557)
                      ++.|+|+++|+|...|..|++|+|||++++.||++||++...     ...+|++|.+|.+.+|+||+.+|.+|++||++.
T Consensus         2 ~~~k~vl~~G~G~~~P~~gd~V~v~y~~~l~dG~~fdss~~~~~~~~~~~~p~~f~lg~~~~i~Gl~~~v~~M~~Ge~~~   81 (116)
T d1pbka_           2 KYTKSVLKKGDKTNFPKKGDVVHCWYTGTLQDGTVFDTNIQTSAKKKKNAKPLSFKVGVGKVIRGWDEALLTMSKGEKAR   81 (116)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEECTTSCEEEECCCSSCCTTTSSCCEEEETTTTSSCHHHHHHHTTCCTTCEEE
T ss_pred             cceEEEEecCCCCCCCCCCCEEEEEEEEEECCCCEeecccccccccccCCCceeeeecccccccchheechhhcCCcEEE
Confidence            578999999999888999999999999999999999876431     346799999999999999999999999999999


Q ss_pred             EEEcCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689          346 LTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (557)
Q Consensus       346 v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~  382 (557)
                      |+|+++++||+.+...  ..|||+++|+|+|+|++++
T Consensus        82 ~~ip~~~ayG~~g~~~--~~Ipp~s~L~feieLl~ve  116 (116)
T d1pbka_          82 LEIEPEWAYGKKGQPD--AKIPPNAKLTFEVELVDID  116 (116)
T ss_dssp             EEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEC
T ss_pred             EEECHHHhCCccCCCC--CCcCcCCeEEEEEEEEEEC
Confidence            9999999999988754  4699999999999999863

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.86  E-value=4.4e-21  Score=172.04  Aligned_cols=150  Identities=34%  Similarity=0.585  Sum_probs=134.6

Q ss_pred             ChHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCC-CChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHH
Q 008689          391 NTEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTS-FGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEK  469 (557)
Q Consensus       391 ~~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~-~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~  469 (557)
                      ..+..+..+..++..|+.+|+.|+|.+|+..|.+|+.+.+.... ....+....+.....+++|+|.||.++++|++|+.
T Consensus        19 ~~~~~~~~a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~   98 (169)
T d1ihga1          19 DVDKILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVD   98 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhh
Confidence            55677888999999999999999999999999999998765432 22344455677888999999999999999999999


Q ss_pred             HHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          470 LCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFY  540 (557)
Q Consensus       470 ~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~  540 (557)
                      +|++||+++|+++++|+++|.||..+|+|++|+++|++|++++|+|..+...+..+..++++.++++++.|
T Consensus        99 ~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~~k~~y  169 (169)
T d1ihga1          99 SCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKAAY  169 (169)
T ss_dssp             HHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred             hhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999998888877543

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.86  E-value=2e-21  Score=162.05  Aligned_cols=108  Identities=31%  Similarity=0.677  Sum_probs=96.3

Q ss_pred             eeecCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCC---cccHHHHHHHcccccccE
Q 008689           32 KEIGNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQG---NVIKGWDIGIKTMKKGEN  108 (557)
Q Consensus        32 ~~~~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~---~~~~gl~~~l~gm~~Ge~  108 (557)
                      ..+.++||.|+++++|+|+..|+.||.|.|||++++ +|++|+++     +..|.++.+   .+|+||++||.+|++|++
T Consensus         3 ~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-----~~~~~~~~~~~~~vi~G~~~~l~~M~~Ge~   76 (115)
T d1kt1a3           3 DLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-----DVAFTVGEGEDHDIPIGIDKALEKMQREEQ   76 (115)
T ss_dssp             ETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCE
T ss_pred             ccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-----ccCceeeeccccccCchhHhhhccchhhce
Confidence            345899999999999999778999999999999996 78888764     466777653   589999999999999999


Q ss_pred             EEEEecCCcccCCCCCCC-CCCCCCcEEEEEEEEEeee
Q 008689          109 AVFTIPPELAYGESGSPP-TIPPNATLQFDVELLSWTS  145 (557)
Q Consensus       109 ~~v~ip~~~ayg~~~~~~-~ip~~~~l~~~v~l~~~~~  145 (557)
                      ++|+|||++|||+.+.++ .||+|++|+|+|+|++|..
T Consensus        77 ~~v~ip~~~ayG~~g~~~~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          77 CILHLGPRYGFGEAGKPKFGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             EEEEECGGGSSCTTCBTTTTBCTTCCEEEEEEEEEEEC
T ss_pred             eEEEeCHHHCcCCCCCCCCCcCcCCeEEEEEEEEEEEe
Confidence            999999999999999776 6999999999999999874

>d2ppna1 d.26.1.1 (A:1-107) FK-506 binding protein (FKBP12), an immunophilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FK-506 binding protein (FKBP12), an immunophilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-21  Score=160.17  Aligned_cols=103  Identities=26%  Similarity=0.514  Sum_probs=96.1

Q ss_pred             ceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCC
Q 008689          154 GIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQY  229 (557)
Q Consensus       154 ~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~  229 (557)
                      ++.++++++|+|...|..||.|++||++++.||++|+++    +|+.|.+|.+++++||+++|.+|++|++++++|||++
T Consensus         1 Gv~~~~l~~G~G~~~p~~gd~V~v~y~g~l~dG~~~d~s~~~~~p~~~~~g~~~~i~G~~~~l~~M~~Ge~~~~~ip~~l   80 (107)
T d2ppna1           1 GVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPDY   80 (107)
T ss_dssp             CEEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEHHHHTSCEEEETTSCCSCHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CcEEEEEECcCCccCCCCCCEEEEEEEEEecCCeEEEeeeccceeeeEeeCcchhheeehhhhcCccCCCEEEEEECHHH
Confidence            467889999999778999999999999999999999876    7899999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCeEEEEEEeeccc
Q 008689          230 GFGEKGKSASGNEGAVPPNATLQIALELVSWK  261 (557)
Q Consensus       230 ~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~  261 (557)
                      |||+.|.+     +.|||+++|+|+|+|++++
T Consensus        81 aYG~~g~~-----~~IPp~s~lif~ieL~~vk  107 (107)
T d2ppna1          81 AYGATGHP-----GIIPPHATLVFDVELLKLE  107 (107)
T ss_dssp             TTTTTCBT-----TTBCTTCCEEEEEEEEEEC
T ss_pred             hCCCCCCC-----CCCCcCCeEEEEEEEEEEC
Confidence            99999875     5799999999999999863

>d1kt1a2 d.26.1.1 (A:28-138) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.85  E-value=2.6e-22  Score=165.61  Aligned_cols=109  Identities=39%  Similarity=0.602  Sum_probs=84.1

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEE
Q 008689          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (557)
Q Consensus       269 d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i  348 (557)
                      |.++.++++++|.|...|..|++|+|||++++.||++|+++.  +.+.|++|.+|.+.+|+||+.+|.+|++||++.|+|
T Consensus         3 d~Gi~~~i~~~G~g~~~P~~gd~V~v~y~~~l~dG~~~dss~--~~~~p~~f~lg~~~~i~G~~~~l~~M~~Ge~~~~~i   80 (111)
T d1kt1a2           3 DRGVLKIVKRVGHGEETPMIGDRVYVHYNGKLANGKKFDSSH--DRNEPFVFSIGKGQVIKAWDIGVATMKKGEICHLLC   80 (111)
T ss_dssp             SCSCEEEC----CCSCCCCTTCEEEEECCCCSCC--------------CEEEETTSSSSCHHHHHSTTTCCTTCCEEEEC
T ss_pred             CCCeEEEEEEcccCCcCCCCCCEEEEEEEEEECCCCEEEEEE--ecceeeeeecCCCcEEeeeeeeehhccCCcEEEEEE
Confidence            789999999999998889999999999999999999998765  367899999999999999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCceEEEEEEEeeee
Q 008689          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSFE  382 (557)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~  382 (557)
                      ++++|||+.+..   ..|||+++|+|+|+|++++
T Consensus        81 p~~layG~~g~~---~~IPp~s~lif~ieLl~ik  111 (111)
T d1kt1a2          81 KPEYAYGATGSL---PKIPSNATLFFEVELLDFK  111 (111)
T ss_dssp             ----CCCTTTCT---TTSCTTCCCEEEEEEEEEE
T ss_pred             CHHHhCCCCCCC---CcCCcCCeEEEEEEEEEEC
Confidence            999999999865   3699999999999999874

>d1yata_ d.26.1.1 (A:) Calcineurin (FKBP12.6) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Calcineurin (FKBP12.6)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=5.5e-21  Score=158.31  Aligned_cols=108  Identities=31%  Similarity=0.502  Sum_probs=100.7

Q ss_pred             CcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCccchhhHHHHHHhccCcCcEEEEEE
Q 008689          269 DKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEEQVIDGLDRAVITMKKNEVALLTI  348 (557)
Q Consensus       269 d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~~vi~gle~~l~~M~~GE~~~v~i  348 (557)
                      |+++.++++++|+|...|..|++|+|||++++.||++|+++.  +...++.|.++.+.+++||+.+|..|++||++.|.+
T Consensus         5 d~gl~~~~l~~G~G~~~P~~gd~V~v~y~~~~~dG~~~ds~~--~~~~~~~~~~~~~~~i~G~~~~l~~M~~G~~~~~~i   82 (113)
T d1yata_           5 EGNVKIDRISPGDGATFPKTGDLVTIHYTGTLENGQKFDSSV--DRGSPFQCNIGVGQVIKGWDVGIPKLSVGEKARLTI   82 (113)
T ss_dssp             GGGCEEEEEECCCSSCCCCTTCEEEEEEEEEETTSCEEEEST--TTTCCEEEETTSSSSCHHHHHHGGGCCTTCEEEEEE
T ss_pred             cCCcEEEEEECccCCcCCCCCCEEEEEEEEEEecCcEEeccc--cCCceEeeeeccCceeeehhhhcccccCCCEEEEEe
Confidence            788999999999998789999999999999999999998765  367899999999999999999999999999999999


Q ss_pred             cCCCccCCccccccccCCCCCceEEEEEEEeee
Q 008689          349 APEYAFGSAESQQELAVVPPNSTVHYEVELVSF  381 (557)
Q Consensus       349 ~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~  381 (557)
                      ++++|||+.+...   .|||+++|+|+|+|+++
T Consensus        83 P~~laYG~~g~~~---~IP~~s~Lif~ieLl~I  112 (113)
T d1yata_          83 PGPYAYGPRGFPG---LIPPNSTLVFDVELLKV  112 (113)
T ss_dssp             CGGGTTTTTCBTT---TBCTTCCEEEEEEEEEE
T ss_pred             chHHeecCcCCCC---ccCcCCeEEEEEEEEEe
Confidence            9999999998753   59999999999999876

>d1kt1a3 d.26.1.1 (A:139-253) FKBP51, N-terminal domains {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP51, N-terminal domains
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.84  E-value=1.5e-20  Score=156.68  Aligned_cols=110  Identities=35%  Similarity=0.657  Sum_probs=97.5

Q ss_pred             eeeeCCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCcc---chhhHHHHHHhccCc
Q 008689          264 SEITDDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKK  340 (557)
Q Consensus       264 ~d~~~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~---~vi~gle~~l~~M~~  340 (557)
                      +|++.|+++.|+|+++|+|..+|..|++|+|||++++ +|++|+++       +..|.++.+   .+|+||+.+|.+|++
T Consensus         2 e~~~~D~gi~k~il~~G~G~~~p~~gd~V~v~y~g~~-~g~~~~~~-------~~~~~~~~~~~~~vi~G~~~~l~~M~~   73 (115)
T d1kt1a3           2 EDLLEDGGIIRRTKRRGEGYSNPNEGARVQIHLEGRC-GGRVFDCR-------DVAFTVGEGEDHDIPIGIDKALEKMQR   73 (115)
T ss_dssp             EETTSSSSEEEEEEECCCCSSCCCTTCEEEEEEEEEE-TTEEEEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCT
T ss_pred             CccccCCCEEEEEEEeecCCCCCCCCCEEEEEEEEEe-CCcccccc-------ccCceeeeccccccCchhHhhhccchh
Confidence            5788999999999999999889999999999999997 67777643       356777654   589999999999999


Q ss_pred             CcEEEEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeee
Q 008689          341 NEVALLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEK  383 (557)
Q Consensus       341 GE~~~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~  383 (557)
                      ||++.|+++++++||+.++++  ..|||+++|.|+|+|+++++
T Consensus        74 Ge~~~v~ip~~~ayG~~g~~~--~~Ipp~a~l~f~ieLl~~~k  114 (115)
T d1kt1a3          74 EEQCILHLGPRYGFGEAGKPK--FGIEPNAELIYEVTLKSFEK  114 (115)
T ss_dssp             TCEEEEEECGGGSSCTTCBTT--TTBCTTCCEEEEEEEEEEEC
T ss_pred             hceeEEEeCHHHCcCCCCCCC--CCcCcCCeEEEEEEEEEEEe
Confidence            999999999999999998764  46999999999999999975

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.7e-20  Score=153.98  Aligned_cols=107  Identities=32%  Similarity=0.645  Sum_probs=92.7

Q ss_pred             cCCCeEEEEEEcccCcCCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccC---CcccHHHHHHHcccccccEEEE
Q 008689           35 GNQGLKKKLVKEGEGWDTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQ---GNVIKGWDIGIKTMKKGENAVF  111 (557)
Q Consensus        35 ~~~g~~~~~~~~G~G~~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~---~~~~~gl~~~l~gm~~Ge~~~v  111 (557)
                      .++||+|+++++|+|+..|..||.|.|||++++.+|. |+++     +..|..+.   .++++||+++|.+|++|++++|
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-----~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~~i   79 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-----ELRFEIGEGENLDLPYGLERAIQRMEKGEHSIV   79 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-----EEEEETTCGGGGTCCHHHHHHHTTCCTTCEEEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-----cccceeeecceeeeCcHHHHhhhcchhhCeEEE
Confidence            4699999999999997789999999999999987664 5543     34566554   3689999999999999999999


Q ss_pred             EecCCcccCCCCCCC-CCCCCCcEEEEEEEEEeeecc
Q 008689          112 TIPPELAYGESGSPP-TIPPNATLQFDVELLSWTSVK  147 (557)
Q Consensus       112 ~ip~~~ayg~~~~~~-~ip~~~~l~~~v~l~~~~~~~  147 (557)
                      +|||++|||..+.+. .|||+++|+|+|+|+++...+
T Consensus        80 ~ip~~~ayG~~g~~~~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          80 YLKPSYAFGSVGKEKFQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EECGGGTTTTTCBGGGTBCTTCCEEEEEEEEEEECCC
T ss_pred             EECHHHhCcccCCCCCccCcCCeEEEEEEEEEEEeCC
Confidence            999999999998765 799999999999999997644

>d1fd9a_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Legionella pneumophila [TaxId: 446]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Legionella pneumophila [TaxId: 446]

Probab=99.81  E-value=4.8e-20  Score=169.09  Aligned_cols=107  Identities=27%  Similarity=0.433  Sum_probs=95.5

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecC
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKP  227 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~  227 (557)
                      ..+.++.++++++|+| ..|..+|.|++||++++++|++|+++  ...++.++.+++|+||+++|.+|++|++++++|||
T Consensus        95 ~~~sGl~y~v~~~G~G-~~p~~~d~v~v~y~g~l~dg~~f~~s~~~~~p~~~~~~~~i~G~~e~l~~m~~G~~~~~~iP~  173 (204)
T d1fd9a_          95 VLPSGLQYKVINSGNG-VKPGKSDTVTVEYTGRLIDGTVFDSTEKTGKPATFQVSQVIPGWTEALQLMPAGSTWEIYVPS  173 (204)
T ss_dssp             ECTTSCEEEEEECCCS-CCCCTTCEEEEEEEEEETTSCEEEEHHHHCSCEEEEGGGSCHHHHHHHTTCCTTCEEEEEECG
T ss_pred             EecCccEEEEeecCCC-cccCCCCEEEEEEEEEECCCCEecccccCCCCceecCCccchhHHHHhcCCCCCCEEEEEECh
Confidence            4578899999999998 78999999999999999999999987  33344445568999999999999999999999999


Q ss_pred             CCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008689          228 QYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (557)
Q Consensus       228 ~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (557)
                      ++|||+.|.+     +.||||++|+|+|+|+++..
T Consensus       174 ~laYG~~g~~-----~~Ipp~s~l~feveL~~i~k  203 (204)
T d1fd9a_         174 GLAYGPRSVG-----GPIGPNETLIFKIHLISVKK  203 (204)
T ss_dssp             GGTTTTCCCS-----SSCCTTCCEEEEEEEEEEEC
T ss_pred             HHCcCCCCCC-----CCcCcCCcEEEEEEEEEEEc
Confidence            9999999876     67999999999999999853

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.4e-19  Score=151.61  Aligned_cols=115  Identities=23%  Similarity=0.259  Sum_probs=108.4

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..++++|+.+|+.|+|++|+..|++|++..|.+..               +|+|+|.||+++++|++|+.+|.+++++
T Consensus         2 ~~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~---------------~~~~~a~~~~~~~~~~~A~~~~~~al~~   66 (117)
T d1elwa_           2 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV---------------LYSNRSAAYAKKGDYQKAYEDGCKTVDL   66 (117)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh---------------hhhcccccccccccccccchhhhhHHHh
Confidence            4678999999999999999999999999999886553               4899999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      +|+++.+|+++|.+|..+|+|++|+.+|++|++++|+++.+...+.+++.
T Consensus        67 ~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          67 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999988864

>d1jvwa_ d.26.1.1 (A:) Macrophage infectivity potentiator protein (MIP) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Macrophage infectivity potentiator protein (MIP)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.80  E-value=7.7e-20  Score=160.42  Aligned_cols=109  Identities=25%  Similarity=0.434  Sum_probs=99.9

Q ss_pred             cccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEec
Q 008689          149 ICKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK  226 (557)
Q Consensus       149 ~~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp  226 (557)
                      +..+.++.++++++|.|...|..||.|++||++++.||++|+++  .+..|.++.+++|+||+++|.+|+.|++++|+||
T Consensus        30 ~~~~sGl~y~il~~G~G~~~P~~gd~V~v~Y~g~l~dG~~fds~~~~~~p~~~~~~~~i~G~~e~l~~M~~Ge~~~v~iP  109 (160)
T d1jvwa_          30 VKLPSGLVFQRIARGSGKRAPAIDDKCEVHYTGRLRDGTVFDSSRERGKPTTFRPNEVIKGWTEALQLMREGDRWRLFIP  109 (160)
T ss_dssp             EECTTSCEEEEEECCCCSBCCCTTCCEEEEEEEECTTSCEEEEHHHHTSCEEECGGGSCHHHHHHHTTCCTTCEEEEEEC
T ss_pred             EECCCCCEEEEEECcccccCCCCCcceEEEEEEEEccCCeeeeeccccCccccCccccchhHHHHhcCccccceeEEEeC
Confidence            34678899999999999778999999999999999999999987  4566888999999999999999999999999999


Q ss_pred             CCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecccc
Q 008689          227 PQYGFGEKGKSASGNEGAVPPNATLQIALELVSWKT  262 (557)
Q Consensus       227 ~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~~~  262 (557)
                      |++|||..|.+     +.|||+++|+|+|+|+++..
T Consensus       110 p~laYG~~g~~-----~~IPp~s~LifeIeLl~i~~  140 (160)
T d1jvwa_         110 YDLAYGVTGGG-----GMIPPYSPLEFDVELISIKD  140 (160)
T ss_dssp             GGGTTTTTCSS-----SSSCTTCCEEEEEEEEEEGG
T ss_pred             HHHCcCCCCCC-----CCcCcCCcEEEEEEEEEEec
Confidence            99999998875     67999999999999999965

>d1q1ca2 d.26.1.1 (A:141-257) FKBP52, N-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP52, N-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.9e-19  Score=147.69  Aligned_cols=108  Identities=39%  Similarity=0.728  Sum_probs=93.8

Q ss_pred             CCcceeEEEEeCCCCCCCCCCCCEEEEEEEEEecCCcEEEecCCCCCcccEEEEcCcc---chhhHHHHHHhccCcCcEE
Q 008689          268 DDKKVIKKILKEGDGFERPNEGAVVKVKLIGKLQDGTVFVKKGHSEEEQLFEFKTDEE---QVIDGLDRAVITMKKNEVA  344 (557)
Q Consensus       268 ~d~~~~kkil~~G~g~~~p~~~~~v~v~~~~~l~~g~~~~~~~~~~~~~~~~~~lg~~---~vi~gle~~l~~M~~GE~~  344 (557)
                      .|+++.|+|+++|.|..+|..|+.|+|||++++.+++ |+++       +..|..+..   .+|+||+.+|.+|++||++
T Consensus         6 ~D~gi~~~il~~G~G~~~p~~gd~V~v~y~g~~~~~~-~~~~-------~~~~~~~~~~~~~~i~Gl~~~l~~M~~Ge~~   77 (117)
T d1q1ca2           6 EDGGIIRRIQTRGEGYAKPNEGAIVEVALEGYYKDKL-FDQR-------ELRFEIGEGENLDLPYGLERAIQRMEKGEHS   77 (117)
T ss_dssp             CSSSEEEEEEECCSCSCCCCTTCEEEEEEEEEETTEE-EEEE-------EEEEETTCGGGGTCCHHHHHHHTTCCTTCEE
T ss_pred             CCCCEEEEEEeeecCCCCCCCCCEEEEEEEEEeCCCc-Eeec-------cccceeeecceeeeCcHHHHhhhcchhhCeE
Confidence            6899999999999998899999999999999998775 4432       245656543   6899999999999999999


Q ss_pred             EEEEcCCCccCCccccccccCCCCCceEEEEEEEeeeeecc
Q 008689          345 LLTIAPEYAFGSAESQQELAVVPPNSTVHYEVELVSFEKEK  385 (557)
Q Consensus       345 ~v~i~~~~~yg~~~~~~~~~~ip~~~~l~~~ieL~~~~~~~  385 (557)
                      .+++++++|||..++..  ..|||+++|+|+|+|+++.+.+
T Consensus        78 ~i~ip~~~ayG~~g~~~--~~Ipp~s~l~f~veL~~~~~~k  116 (117)
T d1q1ca2          78 IVYLKPSYAFGSVGKEK--FQIPPNAELKYELHLKSFEKAK  116 (117)
T ss_dssp             EEEECGGGTTTTTCBGG--GTBCTTCCEEEEEEEEEEECCC
T ss_pred             EEEECHHHhCcccCCCC--CccCcCCeEEEEEEEEEEEeCC
Confidence            99999999999998753  4799999999999999998654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.1e-18  Score=154.44  Aligned_cols=125  Identities=25%  Similarity=0.399  Sum_probs=115.3

Q ss_pred             hHHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHH
Q 008689          392 TEEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLC  471 (557)
Q Consensus       392 ~~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~  471 (557)
                      .+..++.|..++.+||.+|+.|+|++|+..|++|+.+.|.+..               +|+|+|.||++++++++|+.+|
T Consensus         3 ~~~~l~~a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~---------------~~~~lg~~~~~~~~~~~A~~~~   67 (159)
T d1a17a_           3 ADGALKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI---------------YYGNRSLAYLRTECYGYALGDA   67 (159)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH---------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhh---------------hhhhhHHHHHhccccchHHHHH
Confidence            4566789999999999999999999999999999999886543               4899999999999999999999


Q ss_pred             HHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          472 TKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       472 ~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      +++|+++|++.++|+++|.+|..+|+|++|+.+|+++++++|++..+...+..+...+.+
T Consensus        68 ~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          68 TRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999888888665544

>d1u79a_ d.26.1.1 (A:) FKBP13 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: FKBP13
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.78  E-value=1.7e-19  Score=152.23  Aligned_cols=110  Identities=19%  Similarity=0.342  Sum_probs=99.2

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhh------ccCCc
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKT------MKKGE  219 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~------m~~Ge  219 (557)
                      +.+.++.++++.+|+| .+|+.||.|++||++++.+|++|+++    .++.|.+|.+.+++||++++.+      |++|+
T Consensus         5 ~~psGl~y~~~~~G~G-~~p~~gd~V~v~y~g~l~~G~~fdss~~~~~p~~~~~g~~~~i~g~~~~i~g~~~l~~M~~G~   83 (125)
T d1u79a_           5 VSPSGLAFCDKVVGYG-PEAVKGQLIKAHYVGKLENGKVFDSSYNRGKPLTFRIGVGEVIKGWDQGILGSDGIPPMLTGG   83 (125)
T ss_dssp             ECTTSCEEEEEECCSS-CBCCTTCEEEEEEEEECTTSCEEEEHHHHTSCEEEETTSSSSCHHHHHHHHCBTTBCCCBTTC
T ss_pred             ECCCCCEEEEEEeccC-CCCCCCCEEEEEEEeeecCCcEEecccccCcceeEecCccccccchhhhccchhhcccccCCC
Confidence            4567899999999999 78999999999999999999999987    7899999999999999999865      99999


Q ss_pred             EEEEEecCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          220 KVLLAVKPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       220 ~~~i~vp~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      +++++|||++|||++|.......+.|||+++|+|+|+|+.+
T Consensus        84 k~~v~iP~~laYG~~G~~~~~~~~~IPp~s~LifeieLl~~  124 (125)
T d1u79a_          84 KRTLRIPPELAYGDRGAGCKGGSCLIPPASVLLFDIEYIGK  124 (125)
T ss_dssp             EEEEEECGGGTTGGGCEEEETTEEEECTTCCEEEEEEEEEE
T ss_pred             EEEEEECHHHCCCCCCcCCcCCCCcCCcCCeEEEEEEEEEe
Confidence            99999999999999886544445679999999999999864

>d1q6ha_ d.26.1.1 (A:) Peptidyl-prolyl cis-trans isomerase FkpA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Peptidyl-prolyl cis-trans isomerase FkpA
species: Escherichia coli [TaxId: 562]

Probab=99.78  E-value=3.7e-19  Score=163.79  Aligned_cols=102  Identities=31%  Similarity=0.630  Sum_probs=94.1

Q ss_pred             ccccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec----cceEEEecCCCCCchHHHHHhhccCCcEEEEEe
Q 008689          150 CKDGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA----DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAV  225 (557)
Q Consensus       150 ~~d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~----~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~v  225 (557)
                      ..+.++.++++++|+| ..|..||.|+|||++++.||++|+++    +|+.|.+  +++|+||+++|.+|++|++++++|
T Consensus       104 ~~~sGl~y~v~~~G~G-~~p~~gd~v~v~y~g~l~dG~~fd~s~~~~~p~~~~~--~~vi~g~~e~l~~m~~G~k~~~~i  180 (210)
T d1q6ha_         104 TSSTGLVYQVVEAGKG-EAPKDSDTVVVNYKGTLIDGKEFDNSYTRGEPLSFRL--DGVIPGWTEGLKNIKKGGKIKLVI  180 (210)
T ss_dssp             ECTTSCEEEEEECCSS-CCCCTTCEEEEEEEEEETTSCEEEEGGGGTSCEEEEG--GGSCHHHHHHGGGSCTTCEEEEEE
T ss_pred             EccCceEEEEeeCCCC-CCCCCCceEEEEEEEEEcCCCEEeecccCCCcceecc--CccchhHHHHHhhccCCCEEEEEE
Confidence            4678999999999998 89999999999999999999999987    5777777  479999999999999999999999


Q ss_pred             cCCCccCCCCCCCCCCCCCCCCCCeEEEEEEeecc
Q 008689          226 KPQYGFGEKGKSASGNEGAVPPNATLQIALELVSW  260 (557)
Q Consensus       226 p~~~~~g~~g~~~~~~~~~ip~~~~l~~~v~l~~~  260 (557)
                      ||++|||+.|.+      .||||++|+|+|+|+++
T Consensus       181 P~~laYG~~g~~------~Ippns~Lvfevel~~i  209 (210)
T d1q6ha_         181 PPELAYGKAGVP------GIPPNSTLVFDVELLDV  209 (210)
T ss_dssp             CGGGTTTTTCBT------TBCTTCCEEEEEEEEEE
T ss_pred             CHHHCcCCCCCC------CCCcCCcEEEEEEEEEE
Confidence            999999999874      59999999999999986

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.2e-17  Score=153.03  Aligned_cols=103  Identities=32%  Similarity=0.457  Sum_probs=96.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      |..+++.||.+|+.|+|++|+..|.+|+.+.|.+.               .+|+|+|.||+++++|++|+.+|++|+.++
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~---------------~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~   68 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA---------------VYYTNRALCYLKMQQPEQALADCRRALELD   68 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHhHHHHHhhhhhhhhhhHHHHHHHHhC
Confidence            67899999999999999999999999999987654               349999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          479 SRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      |+++++|+++|.+|..+|+|++|+.+|++|++++|++.
T Consensus        69 p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999999999999999999988643

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.68  E-value=4e-18  Score=147.69  Aligned_cols=123  Identities=26%  Similarity=0.465  Sum_probs=91.0

Q ss_pred             CCCCCEEEEEEEEEEcCCCEEeecCC-------------CCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCccc
Q 008689           53 PENGDEVEVHYTGTLLDGTQFDSSRD-------------RSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAY  119 (557)
Q Consensus        53 ~~~gd~V~v~y~~~~~dg~~~~~t~~-------------~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ay  119 (557)
                      +++||.|.+||++++.||++|++|++             ..+|+.|.+|.++++|||++||.||++|++++|.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            67899999999999999999999853             34799999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcEEEEEEEEEeeecccccc-------ccceeeeeeeccccccCCCCCCeEEEEEEEEeCCCeEeeec
Q 008689          120 GESGSPPTIPPNATLQFDVELLSWTSVKDICK-------DGGIIKKILKEGEKWENPKDLDEVLVNYEARLEDGMVVGKA  192 (557)
Q Consensus       120 g~~~~~~~ip~~~~l~~~v~l~~~~~~~d~~~-------d~~~~~~i~~~g~g~~~~~~~d~V~v~y~~~~~~g~~~~~~  192 (557)
                      |+++..        +++.+....+.. .....       ..+...++.+        ..++.|+++|||++++.++.++-
T Consensus        82 G~~d~~--------~v~~vp~~~f~~-~~~~~~~~~~~~~~~~~~~V~~--------v~~~~v~vD~NHPlAG~~L~f~v  144 (151)
T d1ix5a_          82 GNRNEM--------LIQKIPRDAFKE-ADFEPEEGMVILAEGIPATITE--------VTDNEVTLDFNHELAGKDLVFTI  144 (151)
T ss_dssp             CSCCST--------TBCCEETHHHHT-STTCCCTTEEEESSSCEEEEEE--------EETTEEEEECCCSSTTCCEEEEC
T ss_pred             cccccC--------ccceehhhhccc-cccccccceEEecCCCceEEEE--------EcCCEEEEECCCcCCCCeEEEEE
Confidence            998743        222222211111 00000       1111222222        24478999999999999887753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.8e-16  Score=132.43  Aligned_cols=118  Identities=26%  Similarity=0.332  Sum_probs=102.7

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..|.++++.|+.+|+.|+|++|+.+|++|+++.|.+.               .+++|+|.||.++++|++|+.+|+++|.
T Consensus         2 ~~a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~---------------~~~~~~a~~~~~~~~~~~A~~~~~~al~   66 (128)
T d1elra_           2 KQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM---------------TYITNQAAVYFEKGDYNKCRELCEKAIE   66 (128)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH---------------HHHHhHHHHHHHcCchHHHHHHHHHHHH
Confidence            3588899999999999999999999999999977543               3589999999999999999999999999


Q ss_pred             cCCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          477 LDSRNV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       477 ~~p~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      ++|.+.       ++|+++|.++..+++|++|+++|++++.++++ .++...+..+.+.++
T Consensus        67 l~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lk  126 (128)
T d1elra_          67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILK  126 (128)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHh
Confidence            998774       57888899999999999999999999999875 566666666655543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=6.4e-15  Score=123.28  Aligned_cols=114  Identities=16%  Similarity=0.207  Sum_probs=100.3

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh---hhCHHHHHHHHHHHHccCC
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK---LKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k---~~~~~~A~~~~~~al~~~p  479 (557)
                      -+..|.++..++|++|.+.|++|+...|.+..               +++|+|.|+++   .+++++|+..+++++..+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~---------------~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~   67 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKS---------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS   67 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHH---------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHH---------------HHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC
Confidence            45678899999999999999999999886543               48899999987   4567789999999999988


Q ss_pred             CC--hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          480 RN--VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       480 ~~--~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      .+  ..+||++|.+|..+|+|++|+++|+++++++|+|..+...+..+..++++
T Consensus        68 ~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          68 KEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            66  45999999999999999999999999999999999999888888777653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.52  E-value=9.5e-15  Score=128.21  Aligned_cols=120  Identities=18%  Similarity=0.194  Sum_probs=98.9

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTK  473 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~  473 (557)
                      +.+..+..+...|+.+|+.|+|++|+..|++|+++.+.......   .........+|+|+|.||.++|+|++|+.+|++
T Consensus         4 ~~~a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~---~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~   80 (156)
T d2hr2a1           4 KEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEA---FDHAGFDAFCHAGLAEALAGLRSFDEALHSADK   80 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSC---CCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhh---cccchhHHHHHHHHHHHHHHcCccchhhHhhhh
Confidence            34566777788899999999999999999999999887653211   112234567899999999999999999999999


Q ss_pred             HHccCCC-----------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          474 VLDLDSR-----------NVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       474 al~~~p~-----------~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      +|.+.|.           ..++|+++|.+|..+|++++|+++|++|+++.|+..
T Consensus        81 al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~  134 (156)
T d2hr2a1          81 ALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK  134 (156)
T ss_dssp             HHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhh
Confidence            9986432           356899999999999999999999999999977543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.1e-13  Score=131.08  Aligned_cols=118  Identities=19%  Similarity=0.078  Sum_probs=106.2

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+..+|..+++.|+|++|+..|++|+.+.|.+.               .+|+++|.||.++++|++|+.+|++++.
T Consensus        35 ~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~---------------~a~~~lg~~~~~~g~~~~A~~~~~~al~   99 (259)
T d1xnfa_          35 ERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP---------------EVFNYLGIYLTQAGNFDAAYEAFDSVLE   99 (259)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCH---------------HHHhhhchHHHHHHHHHHhhhhhhHHHH
Confidence            4578899999999999999999999999999987654               3488999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ++|++..+++++|.+|..+|++++|++.|+++++++|++......+..+..++
T Consensus       100 ~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         100 LDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999976665555544444

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.49  E-value=1.9e-14  Score=111.51  Aligned_cols=84  Identities=23%  Similarity=0.435  Sum_probs=76.3

Q ss_pred             CCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCCC
Q 008689           52 TPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPPN  131 (557)
Q Consensus        52 ~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~~  131 (557)
                      ++..||.|.|+|+++. ||+.|+++..  ..+.|.+|.++++|||+++|.||++|++++|.|+++.+|+..+.     ++
T Consensus         1 k~a~GD~V~idy~g~~-dG~~~~~~~~--~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l-----aG   72 (85)
T d1hxva_           1 KLANGDIAIIDFTGIV-DNKKLASASA--QNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL-----QS   72 (85)
T ss_dssp             CCCSSEEEEEEEEEEE-TTEECSTTCC--SEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG-----GS
T ss_pred             CCCCCCEEEEEEEEEE-CCEEcccccc--cCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC-----CC
Confidence            4678999999999997 9999998764  67899999999999999999999999999999999999998774     56


Q ss_pred             CcEEEEEEEEEe
Q 008689          132 ATLQFDVELLSW  143 (557)
Q Consensus       132 ~~l~~~v~l~~~  143 (557)
                      .++.|+|+|+++
T Consensus        73 k~~~f~V~v~~V   84 (85)
T d1hxva_          73 KPVTFEVVLKAI   84 (85)
T ss_dssp             CCCEEEEEECCB
T ss_pred             CcEEEEEEEEEe
Confidence            999999999876

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3e-13  Score=122.80  Aligned_cols=122  Identities=23%  Similarity=0.217  Sum_probs=100.0

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+..+.++|..++..++|+.|+..|.++.   +.+               ..+++|+|.||+++|+|++|+.+|++||+
T Consensus         3 ~~~~~l~~~g~~~~~~~d~~~Al~~~~~i~---~~~---------------~~~~~nlG~~~~~~g~~~~A~~~~~kAl~   64 (192)
T d1hh8a_           3 VEAISLWNEGVLAADKKDWKGALDAFSAVQ---DPH---------------SRICFNIGCMYTILKNMTEAEKAFTRSIN   64 (192)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHTSS---SCC---------------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHhcC---CCC---------------HHHHHHHHHHHHHcCCchhHHHHHHHHHH
Confidence            346678899999999999999999998632   111               12478999999999999999999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----------------DVKLEYKTLKEKMKEYNKKE  536 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~----------------~~~~~l~~l~~~~~~~~~~~  536 (557)
                      ++|+++.+|+++|.+|.++|+|++|+++|++|+...+.|.                ++...++.+...+.+..+..
T Consensus        65 ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~  140 (192)
T d1hh8a_          65 RDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE  140 (192)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999999999999999999999877653                34445566655555554443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.42  E-value=1.6e-13  Score=118.61  Aligned_cols=113  Identities=17%  Similarity=0.140  Sum_probs=97.7

Q ss_pred             HHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhh----------hCHHHHHHHHHHHHc
Q 008689          407 NTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKL----------KDYKQAEKLCTKVLD  476 (557)
Q Consensus       407 ~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~----------~~~~~A~~~~~~al~  476 (557)
                      ..+-+.+.|++|+..|++|+++.|.+...               ++|+|.+++.+          +.+++|+.+|++|++
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~---------------~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~   69 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADN---------------LTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL   69 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHH---------------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHH---------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            44556778999999999999999876643               88999998854          556899999999999


Q ss_pred             cCCCChHHHHHHHHHHHhcCC-----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 008689          477 LDSRNVKALYRRAQAYIQMAD-----------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNK  534 (557)
Q Consensus       477 ~~p~~~ka~~~~g~a~~~lg~-----------~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~  534 (557)
                      ++|+++.+|+++|.+|..+|+           |++|+++|++|+.++|+|...+..|..+.+..+...+
T Consensus        70 l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~~e  138 (145)
T d1zu2a1          70 IDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAE  138 (145)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHH
T ss_pred             hcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998864           7999999999999999999999999988776655544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.40  E-value=4e-13  Score=110.52  Aligned_cols=93  Identities=13%  Similarity=0.041  Sum_probs=85.9

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      ..+.|..++++|+|.+|+..|++|+...|.+.               .++.++|.|+.+++++++|+.+++++++++|++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   83 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPERE---------------EAWRSLGLTQAENEKDGLAIIALNHARMLDPKD   83 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccc---------------hhhhhhhhhhhhhhhHHHhhccccccccccccc
Confidence            46789999999999999999999999887643               348899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKAL  509 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al  509 (557)
                      ..+++.+|.+|..+|++++|++.|+++|
T Consensus        84 ~~a~~~la~~y~~~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          84 IAVHAALAVSHTNEHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999986

>d1ix5a_ d.26.1.1 (A:) Archaeal FKBP {Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Archaeal FKBP
species: Archaeon Methanococcus thermolithotrophicus [TaxId: 2186]

Probab=99.30  E-value=3.3e-13  Score=116.34  Aligned_cols=68  Identities=22%  Similarity=0.441  Sum_probs=63.2

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec-----------------cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCcc
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA-----------------DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGF  231 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~-----------------~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~  231 (557)
                      ++.|+.|++||++++.+|++|+++                 +|+.|.+|.++++|||+++|.+|+.|+++.+.|||+.||
T Consensus         2 v~~G~~V~v~Y~~~~~~G~~fdsT~e~~~~~~~~~~~~~~~~P~~f~~G~g~~ipglE~al~gm~~Ge~~~v~i~p~~ay   81 (151)
T d1ix5a_           2 VDKGVKIKVDYIGKLESGDVFDTSIEEVAKEAGIYAPDREYEPLEFVVGEGQLIQGFEEAVLDMEVGDEKTVKIPAEKAY   81 (151)
T ss_dssp             CCTTCEEEECCEECCTTSCCCEESCHHHHHHHTCCCSSCCCCCEEEETTTTCSCHHHHHHHHTCCTTCCCEEEECTTTSS
T ss_pred             ccCCCEEEEEEEEEECCCCEEEeCchHhcccccccccccCCCCEEEEecCCCccHHHHHHHHhhcCCceeEEEeCHHHhc
Confidence            467899999999999999999876                 589999999999999999999999999999999999999


Q ss_pred             CCCCC
Q 008689          232 GEKGK  236 (557)
Q Consensus       232 g~~g~  236 (557)
                      |....
T Consensus        82 G~~d~   86 (151)
T d1ix5a_          82 GNRNE   86 (151)
T ss_dssp             CSCCS
T ss_pred             ccccc
Confidence            97643

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=4e-12  Score=124.60  Aligned_cols=133  Identities=15%  Similarity=0.060  Sum_probs=83.9

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC-------------C-hHHHH------HHHHHHHHHHhhHHH
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF-------------G-DEEKK------QAKALKVACNLNNAA  456 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~-------------~-~~~~~------~~~~~~~~~~~nla~  456 (557)
                      +.+..+...|..+.+.+.+++|+..|++|+++.|.+...             . ++...      +...-...++.++|.
T Consensus        41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~  120 (315)
T d2h6fa1          41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhH
Confidence            345555566777777777777777777777776654321             0 11110      011112345667777


Q ss_pred             HHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          457 CKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       457 ~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ++.+++++++|+.+++++++++|+|..+|+++|.++..++++++|+++|++|++++|+|..+...+..+..++
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~  193 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNT  193 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHc
Confidence            7777777777777777777777777777777777777777777777777777777777766666666554443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=8.9e-12  Score=112.81  Aligned_cols=101  Identities=15%  Similarity=0.092  Sum_probs=91.0

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+.+.|+.++..|+|++|+..|++|+++.|...               .+|+|+|.||.++++|++|+.+|++|+...+
T Consensus        37 ~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~---------------~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~  101 (192)
T d1hh8a_          37 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA---------------VAYFQRGMLYYQTEKYDLAIKDLKEALIQLR  101 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhh---------------hhHHHHHHHHHhhccHHHHHHHHHHHHHhCc
Confidence            3478999999999999999999999999987654               3489999999999999999999999998755


Q ss_pred             CC----------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC
Q 008689          480 RN----------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       480 ~~----------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n  515 (557)
                      .|                ..++|++|.+|..++++++|++.|.+|+++.|+.
T Consensus       102 ~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_         102 GNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             TCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             cCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            43                4789999999999999999999999999999875

>d1hxva_ d.26.1.1 (A:) Trigger factor PPIase domain {Mycoplasma genitalium [TaxId: 2097]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Mycoplasma genitalium [TaxId: 2097]

Probab=99.29  E-value=5.5e-12  Score=97.38  Aligned_cols=81  Identities=16%  Similarity=0.218  Sum_probs=72.9

Q ss_pred             CCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEecCCCccCCCCCCCCCCCCCCC
Q 008689          169 PKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVKPQYGFGEKGKSASGNEGAVP  246 (557)
Q Consensus       169 ~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp~~~~~g~~g~~~~~~~~~ip  246 (557)
                      +..||.|+++|++.+ +|+.+.++  +.+.+.+|.++++|||+++|.+|++|+++.+.|++..+|+..+.          
T Consensus         2 ~a~GD~V~idy~g~~-dG~~~~~~~~~~~~~~lg~~~~ipgf~~~l~g~~~Ge~~~~~i~~p~~y~~~~l----------   70 (85)
T d1hxva_           2 LANGDIAIIDFTGIV-DNKKLASASAQNYELTIGSNSFIKGFETGLIAMKVNQKKTLALTFPSDYHVKEL----------   70 (85)
T ss_dssp             CCSSEEEEEEEEEEE-TTEECSTTCCSEEEEEETSSCSCTTHHHHHHTSCSSEEEEECCCCCTTSSSSGG----------
T ss_pred             CCCCCEEEEEEEEEE-CCEEcccccccCCCEEECCcccCchHHHHhccCcCCCeEEEEEEChhhcCcccC----------
Confidence            568999999999997 89888876  78899999999999999999999999999999997789987654          


Q ss_pred             CCCeEEEEEEeecc
Q 008689          247 PNATLQIALELVSW  260 (557)
Q Consensus       247 ~~~~l~~~v~l~~~  260 (557)
                      ++.++.|+|+|+++
T Consensus        71 aGk~~~f~V~v~~V   84 (85)
T d1hxva_          71 QSKPVTFEVVLKAI   84 (85)
T ss_dssp             GSCCCEEEEEECCB
T ss_pred             CCCcEEEEEEEEEe
Confidence            48899999999876

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=8.3e-12  Score=122.02  Aligned_cols=106  Identities=15%  Similarity=0.125  Sum_probs=93.5

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCC
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDS  479 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p  479 (557)
                      ..+...|..++..|++++|+..|++++...|...               .++.++|.+|.++|++++|+.+|+++++++|
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~---------------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p  237 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY---------------LLWNKLGATLANGNQSEEAVAAYRRALELQP  237 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccc---------------cchhhhhhcccccccchhHHHHHHHHHHHhh
Confidence            3466789999999999999999999999876543               3488999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHH
Q 008689          480 RNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKL  520 (557)
Q Consensus       480 ~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~  520 (557)
                      +++.+|+++|.+|..+|++++|++.|++|++++|++..+..
T Consensus       238 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~  278 (323)
T d1fcha_         238 GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRG  278 (323)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC-----
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhh
Confidence            99999999999999999999999999999999999875443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.8e-11  Score=97.01  Aligned_cols=89  Identities=19%  Similarity=0.119  Sum_probs=74.8

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      +..+.+.|+.+|+.|+|.+|+..|++|+++.+......        .....++.|||.||.++|+|++|+.+++++|+++
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--------~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~   76 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--------IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD   76 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--------SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--------ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC
Confidence            45678999999999999999999999999988654331        1144668899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHhc
Q 008689          479 SRNVKALYRRAQAYIQM  495 (557)
Q Consensus       479 p~~~ka~~~~g~a~~~l  495 (557)
                      |++..|+++++.....+
T Consensus        77 P~~~~a~~Nl~~~~~~l   93 (95)
T d1tjca_          77 PEHQRANGNLKYFEYIM   93 (95)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh
Confidence            99999999988766554

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=1.9e-11  Score=121.12  Aligned_cols=131  Identities=18%  Similarity=0.105  Sum_probs=100.4

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCC------------hHHH-H------HHHHHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFG------------DEEK-K------QAKALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~------------~~~~-~------~~~~~~~~~~~nla~~~~  459 (557)
                      +..+...|..+++.|++++|+..|++|+++.|......            .++. .      ........++.+++.++.
T Consensus       237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            45566778888888888888888888887765432110            0000 0      000112356778899999


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ++++|++|+..++++++++|+++.+++++|.+|..+|++++|++.|++|++++|++..+...+..+..++
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            9999999999999999999999999999999999999999999999999999999988888887775543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.4e-11  Score=120.69  Aligned_cols=130  Identities=10%  Similarity=-0.015  Sum_probs=95.8

Q ss_pred             HhhhHHHHHHHHHcC-cHHHHHHHHHHHHHHhhhcCC--------------CChH-----HHHHHHHHHHHHHhhHHHHH
Q 008689          399 AGKKKEQGNTLFKAG-KYARASKRYEKAVKYIEYDTS--------------FGDE-----EKKQAKALKVACNLNNAACK  458 (557)
Q Consensus       399 a~~~k~~G~~~~~~~-~y~~A~~~y~~Al~~~~~~~~--------------~~~~-----~~~~~~~~~~~~~~nla~~~  458 (557)
                      ...+..+|+.+.+.+ ++++|+..|.+|+...|....              ..+.     ...+...-...+++|+|.++
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~  156 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  156 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHH
Confidence            344555666655543 366666666666665443211              0000     00111112355699999999


Q ss_pred             HhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCC------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          459 LKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMAD------LDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       459 ~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~------~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      .++++|++|+.+|+++|+++|.|..||++||.++..++.      +++|++.+.+|++++|+|..+...++.+...
T Consensus       157 ~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~  232 (315)
T d2h6fa1         157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQD  232 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT
T ss_pred             HHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999999999998887      6899999999999999999998888877543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=3.7e-11  Score=113.25  Aligned_cols=121  Identities=12%  Similarity=-0.011  Sum_probs=99.4

Q ss_pred             CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHH
Q 008689          413 GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAY  492 (557)
Q Consensus       413 ~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~  492 (557)
                      .+++.|+..+.+++....    ..+       .....+++++|.||.++|+|++|+.+++++|.++|+++.+|+++|.+|
T Consensus        13 ~~~e~al~~~~e~l~~~~----~~~-------~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~   81 (259)
T d1xnfa_          13 LQQEVILARMEQILASRA----LTD-------DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYL   81 (259)
T ss_dssp             HHHHHHHHHHHHHHTSSC----CCH-------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhh----cCC-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHH
Confidence            456778888887764322    111       234566899999999999999999999999999999999999999999


Q ss_pred             HhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          493 IQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       493 ~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                      ..+|++++|++.|++|++++|++..+...+..+...+.+..+.. ..|.+.++
T Consensus        82 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~  133 (259)
T d1xnfa_          82 TQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ-DDLLAFYQ  133 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH-HHHHHHHH
T ss_pred             HHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHH-HHHHHHHh
Confidence            99999999999999999999999999988988877776665544 35555544

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.22  E-value=8.8e-11  Score=96.07  Aligned_cols=87  Identities=16%  Similarity=0.123  Sum_probs=82.5

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      ++++|.++++.|+|.+|+..+++++..+|+++.+|+.+|.+|..++++++|+.+|++|++++|++..+...+..+...+.
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCC
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHH
Q 008689          531 EYNKKEA  537 (557)
Q Consensus       531 ~~~~~~~  537 (557)
                      +..+...
T Consensus        99 ~~~~A~~  105 (112)
T d1hxia_          99 NANAALA  105 (112)
T ss_dssp             HHHHHHH
T ss_pred             CHHHHHH
Confidence            7777654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.19  E-value=2.8e-10  Score=101.30  Aligned_cols=120  Identities=15%  Similarity=0.062  Sum_probs=105.1

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-------CCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-------SFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAE  468 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-------~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~  468 (557)
                      +.....+...|+.++..|++++|+..|.+|+.+.+...       .+...+...+......++.+++.+++++|+|++|+
T Consensus         8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al   87 (179)
T d2ff4a2           8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVI   87 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence            45677889999999999999999999999999865432       12234566777888899999999999999999999


Q ss_pred             HHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHH-------HHhCCCC
Q 008689          469 KLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKA-------LEIDPDN  515 (557)
Q Consensus       469 ~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~a-------l~l~p~n  515 (557)
                      .+|++++.++|.+..+|.+++.+|..+|++.+|++.|+++       +-++|..
T Consensus        88 ~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~  141 (179)
T d2ff4a2          88 AELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP  141 (179)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred             HHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence            9999999999999999999999999999999999999998       4467763

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=7.1e-11  Score=93.54  Aligned_cols=80  Identities=25%  Similarity=0.234  Sum_probs=72.6

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCC-------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRN-------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYK  523 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~-------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~  523 (557)
                      ++++|.+++++++|.+|+.++++|+++.|.+       ..+|+++|.+|.++|++++|++.|++|++++|++..+...+.
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl~   87 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNLK   87 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            5699999999999999999999999876543       678999999999999999999999999999999999999988


Q ss_pred             HHHHHHH
Q 008689          524 TLKEKMK  530 (557)
Q Consensus       524 ~l~~~~~  530 (557)
                      .+++.+.
T Consensus        88 ~~~~~l~   94 (95)
T d1tjca_          88 YFEYIMA   94 (95)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhC
Confidence            8776653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.5e-10  Score=94.12  Aligned_cols=95  Identities=17%  Similarity=0.175  Sum_probs=86.6

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +.+.|..+++.|+|++|+..|+++|..+|+++.+|+.+|.+|..+|++++|+.+|+++++++|++..+...+..+...+.
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~   85 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN   85 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHcc
Confidence            34789999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHhhh
Q 008689          531 EYNKKEAKFYGNMFAK  546 (557)
Q Consensus       531 ~~~~~~~~~~~~mf~~  546 (557)
                      +.++... .|++.+..
T Consensus        86 ~~~~A~~-~~~~a~~~  100 (117)
T d1elwa_          86 RFEEAKR-TYEEGLKH  100 (117)
T ss_dssp             CHHHHHH-HHHHHHTT
T ss_pred             CHHHHHH-HHHHHHHh
Confidence            8877664 66666543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.2e-10  Score=105.20  Aligned_cols=94  Identities=16%  Similarity=0.193  Sum_probs=85.5

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +.+.|.++++.|+|++|+..|++||.++|+++.+|+++|.||..+|+|++|+.+|++|++++|++..++..++.+...+.
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~~l~   86 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEME   86 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHHHhh
Q 008689          531 EYNKKEAKFYGNMFA  545 (557)
Q Consensus       531 ~~~~~~~~~~~~mf~  545 (557)
                      +..+... .|++.+.
T Consensus        87 ~~~~A~~-~~~~al~  100 (201)
T d2c2la1          87 SYDEAIA-NLQRAYS  100 (201)
T ss_dssp             CHHHHHH-HHHHHHH
T ss_pred             CHHHHHH-HHHHHHH
Confidence            8777653 5555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.5e-10  Score=99.62  Aligned_cols=94  Identities=19%  Similarity=0.204  Sum_probs=83.4

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +...|.+|++.++|++|+.+++++++++|++..+|+++|.+|..+|++++|+.+|++|++++|++..+...+..+...+.
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999988888888777


Q ss_pred             HHHHHHHHHHHHHhh
Q 008689          531 EYNKKEAKFYGNMFA  545 (557)
Q Consensus       531 ~~~~~~~~~~~~mf~  545 (557)
                      +..+... .|.+...
T Consensus        93 ~~~eA~~-~~~~a~~  106 (159)
T d1a17a_          93 KFRAALR-DYETVVK  106 (159)
T ss_dssp             CHHHHHH-HHHHHHH
T ss_pred             CHHHHHH-HHHHHHH
Confidence            7666543 4444443

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.5e-10  Score=114.35  Aligned_cols=145  Identities=16%  Similarity=0.098  Sum_probs=93.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCC------------ChHH-HHHHH------HHHHHHHhhHHHHHH
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSF------------GDEE-KKQAK------ALKVACNLNNAACKL  459 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~------------~~~~-~~~~~------~~~~~~~~nla~~~~  459 (557)
                      +..+...|..++..++|++|+..|.+++...+.....            .-++ ....+      .-...++.++|.++.
T Consensus       203 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  282 (388)
T d1w3ba_         203 LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALK  282 (388)
T ss_dssp             HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            5678889999999999999999999999875543211            0000 00000      011234566666666


Q ss_pred             hhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          460 KLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKF  539 (557)
Q Consensus       460 k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~  539 (557)
                      +++++.+|+..+++++...|.+..+++.+|.++..+|++++|++.|+++++++|++..+...+..+...+.+.++... .
T Consensus       283 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~-~  361 (388)
T d1w3ba_         283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM-H  361 (388)
T ss_dssp             HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHH-H
T ss_pred             HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH-H
Confidence            677777777777766666666667777777777777777777777777777777776666666666655554444332 4


Q ss_pred             HHHHh
Q 008689          540 YGNMF  544 (557)
Q Consensus       540 ~~~mf  544 (557)
                      |.+.+
T Consensus       362 ~~~al  366 (388)
T d1w3ba_         362 YKEAI  366 (388)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44433

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=1.9e-10  Score=112.11  Aligned_cols=100  Identities=17%  Similarity=0.077  Sum_probs=92.7

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      ..++|..+++.|+|++|+..|++|++..|.+.               .++.++|.||..+++|++|+.++.++++++|++
T Consensus        22 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~---------------~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   86 (323)
T d1fcha_          22 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM---------------EAWQYLGTTQAENEQELLAISALRRCLELKPDN   86 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH---------------HHHHHHHHHHHHcCChHHHHHHHHhhhcccccc
Confidence            35789999999999999999999999877643               248899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR  516 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~  516 (557)
                      ..+++++|.+|..+|++++|++.|++++.++|.+.
T Consensus        87 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~  121 (323)
T d1fcha_          87 QTALMALAVSFTNESLQRQACEILRDWLRYTPAYA  121 (323)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTG
T ss_pred             ccccccccccccccccccccccchhhHHHhccchH
Confidence            99999999999999999999999999999999753

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=1.7e-10  Score=92.50  Aligned_cols=88  Identities=26%  Similarity=0.501  Sum_probs=76.6

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008689           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (557)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~  130 (557)
                      ..++.||.|.|+|+++. ||+.+++...  +.+.|.+|.+.+++||+++|.||++|+++.|.+.....|.....     +
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~d~~~~~l-----a   84 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKA--SDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENL-----K   84 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEE--EEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCSSCCCTTT-----T
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcc--cceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCCCCCchhh-----C
Confidence            56789999999999975 8998876543  56899999999999999999999999999999999888876554     5


Q ss_pred             CCcEEEEEEEEEeeec
Q 008689          131 NATLQFDVELLSWTSV  146 (557)
Q Consensus       131 ~~~l~~~v~l~~~~~~  146 (557)
                      +..+.|.|+|+++...
T Consensus        85 GK~v~f~V~v~~i~~~  100 (106)
T d1l1pa_          85 GKAAKFAINLKKVEER  100 (106)
T ss_dssp             TCCEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEEeccc
Confidence            5999999999998753

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=3.2e-10  Score=95.02  Aligned_cols=80  Identities=21%  Similarity=0.249  Sum_probs=71.2

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +-++|.+|++.++|++|+.+|+++|+++|++..+++++|.+|..+|+|++|+.+|++|++++|++......+.++...+.
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            55899999999999999999999999999999999999999999999999999999999999988765555555444443

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.94  E-value=2.6e-10  Score=92.84  Aligned_cols=87  Identities=23%  Similarity=0.505  Sum_probs=76.5

Q ss_pred             CCCCCCCEEEEEEEEEEcCCCEEeecCCCCCceEEEccCCcccHHHHHHHcccccccEEEEEecCCcccCCCCCCCCCCC
Q 008689           51 DTPENGDEVEVHYTGTLLDGTQFDSSRDRSTPFKFTLGQGNVIKGWDIGIKTMKKGENAVFTIPPELAYGESGSPPTIPP  130 (557)
Q Consensus        51 ~~~~~gd~V~v~y~~~~~dg~~~~~t~~~~~p~~~~lg~~~~~~gl~~~l~gm~~Ge~~~v~ip~~~ayg~~~~~~~ip~  130 (557)
                      ..++.||.|.|+|+++. ||+.++....  ..+.|.+|.+.+++||+++|.||++|++++|.++.+..|.....     +
T Consensus        22 r~a~~gD~v~id~~~~~-dG~~~~~~~~--~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Ped~~~~~l-----a   93 (113)
T d1t11a3          22 EAAENGKRVSIDFVGSI-DGVEFEGGKA--ENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPEDYHAENL-----K   93 (113)
T ss_dssp             CCCCTTCEEEEEEEEES-SSSCCTTCEE--EEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCTTCSCTTT-----S
T ss_pred             ccccCCCEEEEEEEEEE-CCEEccCCcc--ceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCCcCCcccc-----C
Confidence            35789999999999986 8998876643  67899999999999999999999999999999999888877664     5


Q ss_pred             CCcEEEEEEEEEeee
Q 008689          131 NATLQFDVELLSWTS  145 (557)
Q Consensus       131 ~~~l~~~v~l~~~~~  145 (557)
                      +.++.|.|++.+++.
T Consensus        94 Gk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          94 GKAAKFAIKVNKVEA  108 (113)
T ss_dssp             SCEEEECCCEEEEEE
T ss_pred             CCeEEEEEEEEEEEe
Confidence            599999999999875

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.84  E-value=1.3e-08  Score=97.73  Aligned_cols=140  Identities=12%  Similarity=0.043  Sum_probs=101.8

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      +.+..+...|+.+...++|++|+.+|.+|+++.......         .....+|.|+|.||.++++|++|+.++++++.
T Consensus        35 ~Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~---------~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~  105 (290)
T d1qqea_          35 EAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNE---------DEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ  105 (290)
T ss_dssp             HHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCC---------HHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH
Confidence            456778889999999999999999999999986543321         22456788999999999999999999999988


Q ss_pred             cCCCC------hHHHHHHHHHHHh-cCCHHHHHHHHHHHHHhCCCC---H---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          477 LDSRN------VKALYRRAQAYIQ-MADLDLAEFDIKKALEIDPDN---R---DVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (557)
Q Consensus       477 ~~p~~------~ka~~~~g~a~~~-lg~~~~A~~~~~~al~l~p~n---~---~~~~~l~~l~~~~~~~~~~~~~~~~~m  543 (557)
                      +.+.+      ..++.++|.+|.. ++++++|++.|++|+.+.+.+   .   .+...+..+...+.+..+... .|.+.
T Consensus       106 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~-~~~~~  184 (290)
T d1qqea_         106 IFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD-IYSKL  184 (290)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHH
T ss_pred             HhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH-HHHHH
Confidence            75544      6778888888854 799999999999998875432   1   234444555555554444443 55554


Q ss_pred             hhh
Q 008689          544 FAK  546 (557)
Q Consensus       544 f~~  546 (557)
                      ...
T Consensus       185 ~~~  187 (290)
T d1qqea_         185 IKS  187 (290)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.79  E-value=6e-09  Score=91.51  Aligned_cols=92  Identities=15%  Similarity=0.038  Sum_probs=81.8

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHH
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVL  475 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al  475 (557)
                      ...+..+.++|..+++.|+|++|+..|++|+++.|...               .+|+++|.||.++++|++|+.++++++
T Consensus        74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~---------------~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1          74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT---------------KALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh---------------hHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence            44567788899999999999999999999999877543               348999999999999999999999999


Q ss_pred             ccCCCChHHHHHHHHHHHhcCCHHHHH
Q 008689          476 DLDSRNVKALYRRAQAYIQMADLDLAE  502 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~lg~~~~A~  502 (557)
                      +++|+|..++..++.++..+..+.++.
T Consensus       139 ~l~p~n~~~~~~l~~~~~~l~~~~~~~  165 (169)
T d1ihga1         139 EIAPEDKAIQAELLKVKQKIKAQKDKE  165 (169)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998887776664

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=5.5e-09  Score=108.44  Aligned_cols=111  Identities=14%  Similarity=0.032  Sum_probs=80.4

Q ss_pred             hHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC
Q 008689          402 KKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN  481 (557)
Q Consensus       402 ~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~  481 (557)
                      +...|..+.+.+++..|+..|.+++...                 ...++.|+|.++..+++|++|+.+|.+|+.++|++
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~  185 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYI-----------------CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN  185 (497)
T ss_dssp             --------------------CCHHHHHH-----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCC-----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc
Confidence            3344444445555555555555444433                 23468899999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          482 VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       482 ~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      ..+|+++|.+|...|++.+|+.+|.+|+.++|....++..|..+..+.
T Consensus       186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999988776544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.73  E-value=2.9e-08  Score=86.95  Aligned_cols=88  Identities=14%  Similarity=0.131  Sum_probs=77.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+.++|.++++.++|.+|+..|++|+.+.|.+.               .+++++|.||..+++|++|+.+|.+++.+
T Consensus        63 ~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~---------------~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          63 LLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE---------------KGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHhHHHHHHHhhhcccchhhhhhhhhcccchH---------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455677899999999999999999999999877543               45899999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDL  500 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~  500 (557)
                      +|+|..++..++.+...+.++.+
T Consensus       128 ~P~n~~~~~~l~~~~~~~~~~~e  150 (168)
T d1kt1a1         128 NPQNKAARLQIFMCQKKAKEHNE  150 (168)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhHHH
Confidence            99999999999888877776643

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.71  E-value=6.7e-08  Score=92.51  Aligned_cols=110  Identities=25%  Similarity=0.274  Sum_probs=88.8

Q ss_pred             HhhhHHHHHHHHH-cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          399 AGKKKEQGNTLFK-AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       399 a~~~k~~G~~~~~-~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      +..+...|..++. .++|++|+..|.+|+++.+.....         .....++.|+|.+|.++|+|.+|+..|++++..
T Consensus       117 ~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~---------~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~  187 (290)
T d1qqea_         117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV---------ALSNKCFIKCADLKALDGQYIEASDIYSKLIKS  187 (290)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH---------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCch---------hhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHh
Confidence            5567778888876 599999999999999987654321         345667899999999999999999999999998


Q ss_pred             CCCCh-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH
Q 008689          478 DSRNV-------KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRD  517 (557)
Q Consensus       478 ~p~~~-------ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~  517 (557)
                      .+.+.       ..+++.+.++...+++..|...|+++++++|....
T Consensus       188 ~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~  234 (290)
T d1qqea_         188 SMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (290)
T ss_dssp             TSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             CccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccc
Confidence            87653       45688999999999999999999999999997654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=2.2e-08  Score=87.99  Aligned_cols=90  Identities=17%  Similarity=0.099  Sum_probs=79.7

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+.+.|..+++.|+|.+|+..|++|+.+.|.+.               .+++++|.||..+|+|++|+.++++++++
T Consensus        61 ~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~---------------~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          61 RLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE---------------KGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhcccccchhhhhhhccccch---------------hhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            345567899999999999999999999999987643               34899999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcCCHHHHH
Q 008689          478 DSRNVKALYRRAQAYIQMADLDLAE  502 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg~~~~A~  502 (557)
                      +|+|..+...++.++..+.++.+..
T Consensus       126 ~P~n~~~~~~l~~~~~~~~~~~~~e  150 (170)
T d1p5qa1         126 YPNNKAAKTQLAVCQQRIRRQLARE  150 (170)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988887776554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.63  E-value=3.3e-08  Score=85.12  Aligned_cols=84  Identities=11%  Similarity=0.058  Sum_probs=74.6

Q ss_pred             HHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHcc
Q 008689          398 AAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDL  477 (557)
Q Consensus       398 ~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~  477 (557)
                      .+..+.++|..+++.++|.+|+..|.+|+.+.|.+.               .+|+++|.||..+|+|++|+.++.+++.+
T Consensus        66 ~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~---------------ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          66 EISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNV---------------KALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH---------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHhcccchhhhhhhccccccchhh---------------hhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            345677899999999999999999999999877543               45999999999999999999999999999


Q ss_pred             CCCChHHHHHHHHHHHhcC
Q 008689          478 DSRNVKALYRRAQAYIQMA  496 (557)
Q Consensus       478 ~p~~~ka~~~~g~a~~~lg  496 (557)
                      +|+|..+...++.+..++.
T Consensus       131 ~P~n~~~~~~l~~~~~kl~  149 (153)
T d2fbna1         131 NPNNLDIRNSYELCVNKLK  149 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHH
Confidence            9999999988888876654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.63  E-value=9.3e-08  Score=77.42  Aligned_cols=81  Identities=16%  Similarity=0.229  Sum_probs=70.9

Q ss_pred             HhhHHHHHHhh---hCHHHHHHHHHHHHccCCCC-hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 008689          451 NLNNAACKLKL---KDYKQAEKLCTKVLDLDSRN-VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLK  526 (557)
Q Consensus       451 ~~nla~~~~k~---~~~~~A~~~~~~al~~~p~~-~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~  526 (557)
                      .+|.|.|..+.   .+..+++..+..+++.+|.+ ..++|.+|.+|.++|+|++|+++++++|+++|+|..+......+.
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~Ie  117 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMVE  117 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHHHH
Confidence            56888888765   45679999999999999877 479999999999999999999999999999999999888888777


Q ss_pred             HHHHH
Q 008689          527 EKMKE  531 (557)
Q Consensus       527 ~~~~~  531 (557)
                      .++.+
T Consensus       118 ~~~~k  122 (124)
T d2pqrb1         118 DKIQK  122 (124)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            77654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=8.7e-08  Score=81.60  Aligned_cols=75  Identities=12%  Similarity=0.111  Sum_probs=66.7

Q ss_pred             HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 008689          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM----------ADLDLAEFDIKKALEIDPDNRDVKLEYKTL  525 (557)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l----------g~~~~A~~~~~~al~l~p~n~~~~~~l~~l  525 (557)
                      ..|-+++.|++|+..+++|++++|+|+.+++++|.++..+          +.+++|++.|++|++++|++..+...++.+
T Consensus         5 ~~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~   84 (145)
T d1zu2a1           5 TEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNA   84 (145)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHH
Confidence            3456788899999999999999999999999999999865          456899999999999999999999999888


Q ss_pred             HHHHH
Q 008689          526 KEKMK  530 (557)
Q Consensus       526 ~~~~~  530 (557)
                      ...+.
T Consensus        85 y~~~g   89 (145)
T d1zu2a1          85 YTSFA   89 (145)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            76654

>d1l1pa_ d.26.1.1 (A:) Trigger factor PPIase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Escherichia coli [TaxId: 562]

Probab=98.50  E-value=1.5e-07  Score=74.95  Aligned_cols=84  Identities=17%  Similarity=0.323  Sum_probs=69.5

Q ss_pred             cCCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCC
Q 008689          167 ENPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEG  243 (557)
Q Consensus       167 ~~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp-~~~~~g~~g~~~~~~~~  243 (557)
                      ..+..||.|+++|++.. +|+.+.+.  +.+.+.+|.+.+++||+++|.||+.|+++.+.+. |+ .|...         
T Consensus        13 r~a~~GD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~gf~~~L~G~k~Ge~~~~~~~~P~-d~~~~---------   81 (106)
T d1l1pa_          13 GAVEAEDRVTIDFTGSV-DGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPE-EYHAE---------   81 (106)
T ss_dssp             SSCCTTEEEEEEEECCS-SSSCCSTTEEEEEEEEETTSCCCTTHHHHTTSCCTTCCEEEEECCCS-SCCCT---------
T ss_pred             ccccCCCEEEEEEEEEE-CCEECCCCcccceEEEecCCCccchHHHHhcCCCCCceEEEEEEeCC-CCCch---------
Confidence            35668999999999876 77777643  7889999999999999999999999999999996 44 45432         


Q ss_pred             CCCCCCeEEEEEEeecccc
Q 008689          244 AVPPNATLQIALELVSWKT  262 (557)
Q Consensus       244 ~ip~~~~l~~~v~l~~~~~  262 (557)
                       -..+.++.|.|+|+++..
T Consensus        82 -~laGK~v~f~V~v~~i~~   99 (106)
T d1l1pa_          82 -NLKGKAAKFAINLKKVEE   99 (106)
T ss_dssp             -TTTTCCEEEEEEEEEEEC
T ss_pred             -hhCCCEEEEEEEEEEecc
Confidence             245899999999999864

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=9.3e-08  Score=78.74  Aligned_cols=94  Identities=13%  Similarity=0.106  Sum_probs=80.4

Q ss_pred             hhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhc---CCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHH
Q 008689          452 LNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQM---ADLDLAEFDIKKALEIDPDNR--DVKLEYKTLK  526 (557)
Q Consensus       452 ~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~l---g~~~~A~~~~~~al~l~p~n~--~~~~~l~~l~  526 (557)
                      .|++..+..+++|++|.+.|+++|.++|+++.++|++|.|+.+.   +++++|+..|+++++.+|.+.  ++...++.+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            47888899999999999999999999999999999999999874   456689999999999998764  4777889898


Q ss_pred             HHHHHHHHHHHHHHHHHhhh
Q 008689          527 EKMKEYNKKEAKFYGNMFAK  546 (557)
Q Consensus       527 ~~~~~~~~~~~~~~~~mf~~  546 (557)
                      ..+.+..+..+ .|.+++..
T Consensus        83 ~~~g~~~~A~~-~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALK-YVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHH-HHHHHHHH
T ss_pred             HHHhhhHHHHH-HHHHHHHh
Confidence            88888877664 77776653

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=1.9e-07  Score=90.95  Aligned_cols=119  Identities=13%  Similarity=0.053  Sum_probs=100.6

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhC--HHHHHHHHHHH
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKD--YKQAEKLCTKV  474 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~--~~~A~~~~~~a  474 (557)
                      .....+...+..+...+++.+|+..|++++...|.+..               ++.+++.++..+++  +.+|+..|+++
T Consensus        71 ~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~---------------~~~~~~~~~~~~~~~~~~~a~~~~~~a  135 (334)
T d1dcea1          71 EVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG---------------TWHHRCWLLSRLPEPNWARELELCARF  135 (334)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH---------------HHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHH---------------HHHHhhHHHHHhccccHHHHHHHHHHH
Confidence            33455666677788888999999999999998775543               37788888777764  89999999999


Q ss_pred             HccCCCChHHH-HHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          475 LDLDSRNVKAL-YRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       475 l~~~p~~~ka~-~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +.++|.+..++ +++|.++...+++++|++.++++++++|+|..+...+..+...+.
T Consensus       136 l~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~  192 (334)
T d1dcea1         136 LEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (334)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             HhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhc
Confidence            99999998886 578899999999999999999999999999999988888876654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.45  E-value=1.3e-07  Score=92.31  Aligned_cols=103  Identities=7%  Similarity=-0.137  Sum_probs=82.5

Q ss_pred             HHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHH
Q 008689          410 FKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRA  489 (557)
Q Consensus       410 ~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g  489 (557)
                      ...+.+.+|+..|.+++...+.....               +.+++.++..++++.+|+..+.+++..+|.+..+++.+|
T Consensus       219 ~~l~~~~~a~~~~~~~l~~~~~~~~~---------------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  283 (334)
T d1dcea1         219 FFTDPNDQSAWFYHRWLLGRAEPLFR---------------CELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLM  283 (334)
T ss_dssp             HHHCSSCSHHHHHHHHHHSCCCCSSS---------------CCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHhcchhHHHHHHHHHHHhCcchhhH---------------HHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHH
Confidence            33444445555555555544433332               558899999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 008689          490 QAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKE  527 (557)
Q Consensus       490 ~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~  527 (557)
                      .+|..+|++++|+++|++|++++|.+......|+....
T Consensus       284 ~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         284 RALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence            99999999999999999999999998877776655433

>d1t11a3 d.26.1.1 (A:135-247) Trigger factor PPIase domain {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: FKBP-like
superfamily: FKBP-like
family: FKBP immunophilin/proline isomerase
domain: Trigger factor PPIase domain
species: Vibrio cholerae [TaxId: 666]

Probab=98.32  E-value=2.3e-07  Score=74.87  Aligned_cols=83  Identities=12%  Similarity=0.320  Sum_probs=68.6

Q ss_pred             CCCCCCeEEEEEEEEeCCCeEeeec--cceEEEecCCCCCchHHHHHhhccCCcEEEEEec-CCCccCCCCCCCCCCCCC
Q 008689          168 NPKDLDEVLVNYEARLEDGMVVGKA--DGVEFTVKDGHFCPTLAKAVKTMKKGEKVLLAVK-PQYGFGEKGKSASGNEGA  244 (557)
Q Consensus       168 ~~~~~d~V~v~y~~~~~~g~~~~~~--~~~~~~~g~~~~~~gl~~~l~~m~~Ge~~~i~vp-~~~~~g~~g~~~~~~~~~  244 (557)
                      .+..||.|+++|.+.. +|+.+...  ..+.+.+|.+.++++|+++|.||+.|+++.+.++ |+ .|....         
T Consensus        23 ~a~~gD~v~id~~~~~-dG~~~~~~~~~~~~~~lg~~~~~~~f~~~L~G~k~Ge~~~~~~~~Pe-d~~~~~---------   91 (113)
T d1t11a3          23 AAENGKRVSIDFVGSI-DGVEFEGGKAENFPLEMGAGRMIPGFEDGIVGKTKGMEFVIDVTFPE-DYHAEN---------   91 (113)
T ss_dssp             CCCTTCEEEEEEEEES-SSSCCTTCEEEEEEEETTSCCBSTTSGGGTTTCCSSCCCCEEEECCT-TCSCTT---------
T ss_pred             cccCCCEEEEEEEEEE-CCEEccCCccceEEEEeccccccccHHHhhcCCcCCCEEEEEEeCCC-cCCccc---------
Confidence            4678999999999997 67776644  7788999999999999999999999999999886 44 454332         


Q ss_pred             CCCCCeEEEEEEeecccc
Q 008689          245 VPPNATLQIALELVSWKT  262 (557)
Q Consensus       245 ip~~~~l~~~v~l~~~~~  262 (557)
                       -.+.++.|.|+|+++..
T Consensus        92 -laGk~~~f~v~v~~Ik~  108 (113)
T d1t11a3          92 -LKGKAAKFAIKVNKVEA  108 (113)
T ss_dssp             -TSSCEEEECCCEEEEEE
T ss_pred             -cCCCeEEEEEEEEEEEe
Confidence             35789999999998854

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.27  E-value=1.1e-06  Score=75.46  Aligned_cols=92  Identities=13%  Similarity=0.125  Sum_probs=69.9

Q ss_pred             hHHHHHHhhhCHHHHHHHHHHHHccCCCC------------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCC-----
Q 008689          453 NNAACKLKLKDYKQAEKLCTKVLDLDSRN------------VKALYRRAQAYIQMADLDLAEFDIKKALEIDPDN-----  515 (557)
Q Consensus       453 nla~~~~k~~~~~~A~~~~~~al~~~p~~------------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n-----  515 (557)
                      ..|..++..|+|++|+..|+++|++.|++            ..+|.++|.||..+|+|++|+.++.+++++.|.+     
T Consensus        14 ~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~   93 (156)
T d2hr2a1          14 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ   93 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccc
Confidence            44889999999999999999999988764            3689999999999999999999999999875531     


Q ss_pred             --H----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 008689          516 --R----DVKLEYKTLKEKMKEYNKKEAKFYGNMFA  545 (557)
Q Consensus       516 --~----~~~~~l~~l~~~~~~~~~~~~~~~~~mf~  545 (557)
                        .    .+...+..+...+.+.++... .|++...
T Consensus        94 ~~~~~~~~a~~~~g~~~~~lg~~eeA~~-~~~~Al~  128 (156)
T d2hr2a1          94 DEGKLWISAVYSRALALDGLGRGAEAMP-EFKKVVE  128 (156)
T ss_dssp             THHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHHHHH
T ss_pred             cccchhHHHHhhhHHHHHHHHHHHHHHH-HHHHHHH
Confidence              1    234445666666666555442 4555443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=5.9e-06  Score=79.23  Aligned_cols=106  Identities=9%  Similarity=0.005  Sum_probs=88.1

Q ss_pred             HHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc
Q 008689          397 EAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD  476 (557)
Q Consensus       397 ~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~  476 (557)
                      ..+....-+|..++..|++++|+..|++|++..+....          .....++.++|.+|..+|+|++|+..+.+++.
T Consensus        10 ~~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~----------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   79 (366)
T d1hz4a_          10 MHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWF----------YSRIVATSVLGEVLHCKGELTRSLALMQQTEQ   79 (366)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCH----------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCc----------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            34555666799999999999999999999998765331          23455688999999999999999999999988


Q ss_pred             cCCCC------hHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Q 008689          477 LDSRN------VKALYRRAQAYIQMADLDLAEFDIKKALEID  512 (557)
Q Consensus       477 ~~p~~------~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~  512 (557)
                      +.+..      ..+++.++.++...+++..|...+.+++.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          80 MARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            65432      5688899999999999999999999999764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=1.2e-06  Score=84.19  Aligned_cols=105  Identities=19%  Similarity=0.094  Sum_probs=87.3

Q ss_pred             HhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHc--
Q 008689          399 AGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLD--  476 (557)
Q Consensus       399 a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~--  476 (557)
                      +..+...|..+...++++.|...|.+++...+.....           ....+.|+|.+|+.+++|++|+..+++++.  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  281 (366)
T d1hz4a_         213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF-----------LQGQWRNIARAQILLGEFEPAEIVLEELNENA  281 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG-----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchH-----------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            4456678888999999999999999988765543322           233467899999999999999999999984  


Q ss_pred             ----cCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Q 008689          477 ----LDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPD  514 (557)
Q Consensus       477 ----~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~  514 (557)
                          ..|....+++.+|.+|..+|++++|++.|++|+++.+.
T Consensus       282 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~  323 (366)
T d1hz4a_         282 RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR  323 (366)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhh
Confidence                44667889999999999999999999999999998543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.15  E-value=4.4e-06  Score=78.20  Aligned_cols=74  Identities=11%  Similarity=0.104  Sum_probs=67.4

Q ss_pred             HHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 008689          456 ACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKM  529 (557)
Q Consensus       456 ~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~  529 (557)
                      .-.++.|++++|+..++++++.+|+|..++..+|.+|+.+|++++|++.|+++++++|++..+...+..+....
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~   77 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA   77 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhc
Confidence            45678999999999999999999999999999999999999999999999999999999988887777665433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.15  E-value=5.5e-07  Score=84.56  Aligned_cols=92  Identities=12%  Similarity=0.012  Sum_probs=79.5

Q ss_pred             HHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHH
Q 008689          405 QGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKA  484 (557)
Q Consensus       405 ~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka  484 (557)
                      ++..+++.|++++|+..|.++++..|.+...               +.+++.++...|+|++|+..++++++++|++..+
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~a---------------r~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~   66 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASL---------------RSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG   66 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHH---------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHH---------------HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHH
Confidence            3567889999999999999999998876543               8899999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 008689          485 LYRRAQAYIQMADLDLAEFDIKKALEI  511 (557)
Q Consensus       485 ~~~~g~a~~~lg~~~~A~~~~~~al~l  511 (557)
                      +..++.++...+..+++...+.++..+
T Consensus        67 ~~~l~~ll~a~~~~~~a~~~~~~~~~~   93 (264)
T d1zbpa1          67 ASQLRHLVKAAQARKDFAQGAATAKVL   93 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSCCCEECC
T ss_pred             HHHHHHHHHhccccHHHHHHhhhhhcc
Confidence            999999998888877776665554444

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.6e-07  Score=91.88  Aligned_cols=83  Identities=11%  Similarity=-0.053  Sum_probs=56.0

Q ss_pred             HhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 008689          451 NLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMK  530 (557)
Q Consensus       451 ~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~  530 (557)
                      +.|++.++.+.+++..|+..+.+++..++  ..+++++|.++..+++|++|+.+|++|++++|++......|+.+.....
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             --------------------CCHHHHHHH--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCH--HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            78999999999999999999999998876  4789999999999999999999999999999999999999999877665


Q ss_pred             HHHHH
Q 008689          531 EYNKK  535 (557)
Q Consensus       531 ~~~~~  535 (557)
                      +..+.
T Consensus       201 ~~~~A  205 (497)
T d1ya0a1         201 DHLTT  205 (497)
T ss_dssp             CHHHH
T ss_pred             CHHHH
Confidence            55543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.98  E-value=3.7e-05  Score=67.18  Aligned_cols=93  Identities=12%  Similarity=-0.003  Sum_probs=78.8

Q ss_pred             HHhhHHHHHHhhhCHHHHHHHHHHHHccCCCC----------------------hHHHHHHHHHHHhcCCHHHHHHHHHH
Q 008689          450 CNLNNAACKLKLKDYKQAEKLCTKVLDLDSRN----------------------VKALYRRAQAYIQMADLDLAEFDIKK  507 (557)
Q Consensus       450 ~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~----------------------~ka~~~~g~a~~~lg~~~~A~~~~~~  507 (557)
                      .+.+.|......|++++|+..|.+||.+.+..                      ..++.+++.++..+|++++|+.++++
T Consensus        13 ~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~~   92 (179)
T d2ff4a2          13 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA   92 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            46789999999999999999999999986543                      36889999999999999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008689          508 ALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNM  543 (557)
Q Consensus       508 al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~m  543 (557)
                      ++.++|.+..++..+..+...+.+..+..+ .|.++
T Consensus        93 al~~~P~~e~~~~~l~~al~~~Gr~~eAl~-~y~~~  127 (179)
T d2ff4a2          93 LTFEHPYREPLWTQLITAYYLSDRQSDALG-AYRRV  127 (179)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHH-HHHHH
T ss_pred             HHHhCCccHHHHHHHHHHHHHhcCHHHHHH-HHHHH
Confidence            999999999999988888777766665543 44444

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.93  E-value=4.2e-05  Score=73.01  Aligned_cols=129  Identities=9%  Similarity=0.006  Sum_probs=81.2

Q ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHH-hhhCHHHHHHHHHHHHccCCCCh
Q 008689          404 EQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKL-KLKDYKQAEKLCTKVLDLDSRNV  482 (557)
Q Consensus       404 ~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-k~~~~~~A~~~~~~al~~~p~~~  482 (557)
                      ..++...+.++++.|...|.+|+...+....               ++.+.|.... ..++.+.|...+++++..+|++.
T Consensus       139 ~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~---------------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~  203 (308)
T d2onda1         139 QYMKFARRAEGIKSGRMIFKKAREDARTRHH---------------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  203 (308)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH---------------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhCCCcHH---------------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhH
Confidence            4444455555666666666666655443321               2445554433 35778888888888888888888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 008689          483 KALYRRAQAYIQMADLDLAEFDIKKALEIDPDNR----DVKLEYKTLKEKMKEYNKKEAKFYGNMFAKMN  548 (557)
Q Consensus       483 ka~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~----~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~~  548 (557)
                      ..+...+..+...|+++.|+..|++|++..|.++    .+...+............. .+.++++...+.
T Consensus       204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~-~~~~~r~~~~~~  272 (308)
T d2onda1         204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASI-LKVEKRRFTAFR  272 (308)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHH-HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHCc
Confidence            8888888888888888888888888888776543    3444444443333222222 235566655543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=0.00013  Score=69.34  Aligned_cols=130  Identities=12%  Similarity=0.056  Sum_probs=102.5

Q ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCCh
Q 008689          403 KEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNV  482 (557)
Q Consensus       403 k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~  482 (557)
                      ...+......++++.|...|.+++...+.+.              ..++...+....+.++++.|+..+.+++...|.+.
T Consensus       103 ~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~--------------~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~  168 (308)
T d2onda1         103 FAYADYEESRMKYEKVHSIYNRLLAIEDIDP--------------TLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH  168 (308)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT--------------HHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhcCCh--------------HHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcH
Confidence            4456667788999999999999998655432              12356778888899999999999999999999999


Q ss_pred             HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 008689          483 KALYRRAQAYI-QMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKEYNKKEAKFYGNMFAKM  547 (557)
Q Consensus       483 ka~~~~g~a~~-~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~~~~~~~~~~~~mf~~~  547 (557)
                      ..+...|.... ..++.+.|...|+++++..|++..+...+..+........+ -+..|.+.....
T Consensus       169 ~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~-aR~~fe~ai~~~  233 (308)
T d2onda1         169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNN-TRVLFERVLTSG  233 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHH-HHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHH-HHHHHHHHHHhC
Confidence            99998887654 46899999999999999999999888888777665544433 345777766654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.68  E-value=0.00016  Score=58.00  Aligned_cols=77  Identities=14%  Similarity=0.103  Sum_probs=56.9

Q ss_pred             hHHHHHHHHHc---CcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccC
Q 008689          402 KKEQGNTLFKA---GKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLD  478 (557)
Q Consensus       402 ~k~~G~~~~~~---~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~  478 (557)
                      .++.|-.+.+.   .+.++|+..+..+++..+..              ...|+++||.+|+++|+|++|+.+|+++|+++
T Consensus        38 ~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~--------------~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          38 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAESR--------------RRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG--------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchh--------------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34444445443   34567888887777654321              34568899999999999999999999999999


Q ss_pred             CCChHHHHHHHHHH
Q 008689          479 SRNVKALYRRAQAY  492 (557)
Q Consensus       479 p~~~ka~~~~g~a~  492 (557)
                      |+|..|..-+-.+.
T Consensus       104 P~n~qA~~L~~~Ie  117 (124)
T d2pqrb1         104 RNNKQVGALKSMVE  117 (124)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHH
Confidence            99998876655544

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.27  E-value=0.0013  Score=60.44  Aligned_cols=97  Identities=20%  Similarity=0.178  Sum_probs=80.4

Q ss_pred             hhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHh----hhCHHHHHHHHHHHH
Q 008689          400 GKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLK----LKDYKQAEKLCTKVL  475 (557)
Q Consensus       400 ~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k----~~~~~~A~~~~~~al  475 (557)
                      ..+...|..++++++|.+|+..|++|.+.-.                 ..++.+||.+|..    ..++..|+.++..+.
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g~-----------------~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~   65 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLKE-----------------NSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC   65 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-----------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC-----------------HHHHHHHHHHHHcCCCcchhHHHHHHhhcccc
Confidence            5678899999999999999999999987532                 1237789999988    779999999999988


Q ss_pred             ccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCC
Q 008689          476 DLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDN  515 (557)
Q Consensus       476 ~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n  515 (557)
                      ..  .++.+.+++|..+..    ..+.+.|...++++.+..+..
T Consensus        66 ~~--~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~  107 (265)
T d1ouva_          66 DL--NYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE  107 (265)
T ss_dssp             HT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cc--cccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh
Confidence            65  478889999988876    468899999999998876543

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.0012  Score=53.94  Aligned_cols=60  Identities=13%  Similarity=0.025  Sum_probs=36.5

Q ss_pred             HhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhC
Q 008689          451 NLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEID  512 (557)
Q Consensus       451 ~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~  512 (557)
                      +++||.+|+.    ..++.+|+.+++++.+.  .++.|.+++|.+|..    ..++++|+.+|++|.++.
T Consensus        58 ~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          58 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhhHHHhhhhccccchhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            4556666654    34566666666666554  456666666666665    346666666666666554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.06  E-value=0.00037  Score=64.21  Aligned_cols=74  Identities=16%  Similarity=0.101  Sum_probs=60.7

Q ss_pred             HHHHhhHHHHHHh----hhCHHHHHHHHHHHHccCCCChHHHHHHHHHHHh----cCCHHHHHHHHHHHHHhCCCCHHHH
Q 008689          448 VACNLNNAACKLK----LKDYKQAEKLCTKVLDLDSRNVKALYRRAQAYIQ----MADLDLAEFDIKKALEIDPDNRDVK  519 (557)
Q Consensus       448 ~~~~~nla~~~~k----~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a~~~----lg~~~~A~~~~~~al~l~p~n~~~~  519 (557)
                      ..+++|+|.+|..    .++++.|+.++.++.+.  .++.|+|++|.+|..    ..++++|+++|++|..+....  +.
T Consensus       178 ~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~--g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~--A~  253 (265)
T d1ouva_         178 SPGCFNAGNMYHHGEGATKNFKEALARYSKACEL--ENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG--AC  253 (265)
T ss_dssp             HHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH--HH
T ss_pred             cccccchhhhcccCcccccchhhhhhhHhhhhcc--cCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH--HH
Confidence            3457799999987    77999999999999887  579999999999987    448999999999999887443  55


Q ss_pred             HHHHHH
Q 008689          520 LEYKTL  525 (557)
Q Consensus       520 ~~l~~l  525 (557)
                      ..|..|
T Consensus       254 ~~l~~l  259 (265)
T d1ouva_         254 DILKQL  259 (265)
T ss_dssp             HHHHTC
T ss_pred             HHHHHH
Confidence            555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.91  E-value=0.0024  Score=52.01  Aligned_cols=94  Identities=17%  Similarity=0.052  Sum_probs=72.4

Q ss_pred             cCcHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHHHHHHhhHHHHHHhhhCHHHHHHHHHHHHccCCCChHHHHHHHHH
Q 008689          412 AGKYARASKRYEKAVKYIEYDTSFGDEEKKQAKALKVACNLNNAACKLKLKDYKQAEKLCTKVLDLDSRNVKALYRRAQA  491 (557)
Q Consensus       412 ~~~y~~A~~~y~~Al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~k~~~~~~A~~~~~~al~~~p~~~ka~~~~g~a  491 (557)
                      .+++++|+..|++|.+.-.  ..               .+++|+.  ....++++|+.+++++.+.  .++.|++++|..
T Consensus         6 ~kd~~~A~~~~~kaa~~g~--~~---------------a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~   64 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELNE--MF---------------GCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDF   64 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTTC--TT---------------HHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCC--hh---------------hhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHh
Confidence            3689999999999987532  11               1445543  4567899999999999875  689999999999


Q ss_pred             HHh----cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 008689          492 YIQ----MADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEK  528 (557)
Q Consensus       492 ~~~----lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~  528 (557)
                      |..    ..++++|+++|++|.+..  ++.+...|..+...
T Consensus        65 y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~  103 (133)
T d1klxa_          65 YENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYA  103 (133)
T ss_dssp             HHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             hhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHc
Confidence            987    567999999999998764  56666777766543

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.79  E-value=0.28  Score=36.45  Aligned_cols=64  Identities=14%  Similarity=0.123  Sum_probs=43.8

Q ss_pred             HHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhcC-CCChHHHHHHHHHHHHHHhhHHHH
Q 008689          394 EKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYDT-SFGDEEKKQAKALKVACNLNNAAC  457 (557)
Q Consensus       394 e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~~-~~~~~~~~~~~~~~~~~~~nla~~  457 (557)
                      ..+..|..+..+|..+-+.|+|.+|+.+|.+|++++-... ...+....+.-.-++.-|.++|..
T Consensus        10 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~~~e~~~~~k~~l~~k~~eYl~RAE~   74 (93)
T d1wfda_          10 SDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAEN   74 (93)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence            3567788899999999999999999999999999875432 112223333333344445566554

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=89.42  E-value=1.2  Score=31.43  Aligned_cols=37  Identities=27%  Similarity=0.426  Sum_probs=33.3

Q ss_pred             HHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhhhc
Q 008689          396 IEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIEYD  432 (557)
Q Consensus       396 ~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~~~  432 (557)
                      ++.|..+-.++..+.+.|.|++|+.++.+|+.++...
T Consensus         5 LN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA   41 (83)
T d2crba1           5 LNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA   41 (83)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            5778888899999999999999999999999987643

>d1wr0a1 a.7.14.1 (A:5-81) Vacuolar sorting protein 4b (VPS4B, SKD1 protein) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Vacuolar sorting protein 4b (VPS4B, SKD1 protein)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.51  E-value=0.22  Score=35.56  Aligned_cols=38  Identities=26%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             HHHHHHHhhhHHHHHHHHHcCcHHHHHHHHHHHHHHhh
Q 008689          393 EEKIEAAGKKKEQGNTLFKAGKYARASKRYEKAVKYIE  430 (557)
Q Consensus       393 ~e~~~~a~~~k~~G~~~~~~~~y~~A~~~y~~Al~~~~  430 (557)
                      .+.++.|..+..+|..+-+.|+|..|+.+|.+|++++.
T Consensus         5 ~~~l~~A~~l~~~Av~~D~~~~y~~A~~~Y~~a~~~l~   42 (77)
T d1wr0a1           5 SPNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFL   42 (77)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999764

>d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain-like
family: MIT domain
domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.36  E-value=4.5  Score=28.35  Aligned_cols=38  Identities=18%  Similarity=0.209  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH-------HhCCCCHHHHHHH
Q 008689          484 ALYRRAQAYIQMADLDLAEFDIKKAL-------EIDPDNRDVKLEY  522 (557)
Q Consensus       484 a~~~~g~a~~~lg~~~~A~~~~~~al-------~l~p~n~~~~~~l  522 (557)
                      -+-|+|..++..|.|++|+++.++|.       ++ +.+..+..-|
T Consensus        10 ~~~RrAer~l~~~rydeAIech~kA~~yl~eA~kl-t~s~~~l~SL   54 (83)
T d2crba1          10 QQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKL-TESEQAHLSL   54 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT-CCCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            34577777777777777777766554       44 5665544433

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.40  E-value=1.4  Score=40.98  Aligned_cols=47  Identities=17%  Similarity=0.109  Sum_probs=33.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 008689          485 LYRRAQAYIQMADLDLAEFDIKKALEIDPDNRDVKLEYKTLKEKMKE  531 (557)
Q Consensus       485 ~~~~g~a~~~lg~~~~A~~~~~~al~l~p~n~~~~~~l~~l~~~~~~  531 (557)
                      +--.-..|...|.+++.+..|..++.+++.+..+..++..+..+...
T Consensus       102 l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~  148 (336)
T d1b89a_         102 LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP  148 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh
Confidence            34455667777888888888888887777777777777666555433