Citrus Sinensis ID: 008693
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | 2.2.26 [Sep-21-2011] | |||||||
| Q9S702 | 559 | Aspartokinase 3, chloropl | yes | no | 0.965 | 0.962 | 0.757 | 0.0 | |
| O23653 | 544 | Aspartokinase 2, chloropl | no | no | 0.933 | 0.955 | 0.775 | 0.0 | |
| Q9LYU8 | 569 | Aspartokinase 1, chloropl | no | no | 0.881 | 0.862 | 0.800 | 0.0 | |
| Q57991 | 473 | Probable aspartokinase OS | yes | no | 0.793 | 0.934 | 0.360 | 1e-74 | |
| P08660 | 449 | Lysine-sensitive aspartok | N/A | no | 0.770 | 0.955 | 0.351 | 1e-51 | |
| P00561 | 820 | Bifunctional aspartokinas | N/A | no | 0.800 | 0.543 | 0.322 | 2e-51 | |
| O60163 | 519 | Probable aspartokinase OS | yes | no | 0.786 | 0.843 | 0.295 | 8e-51 | |
| P27725 | 819 | Bifunctional aspartokinas | N/A | no | 0.797 | 0.542 | 0.295 | 8e-47 | |
| O81852 | 916 | Bifunctional aspartokinas | no | no | 0.856 | 0.520 | 0.278 | 3e-45 | |
| P49079 | 920 | Bifunctional aspartokinas | N/A | no | 0.813 | 0.492 | 0.276 | 2e-44 |
| >sp|Q9S702|AK3_ARATH Aspartokinase 3, chloroplastic OS=Arabidopsis thaliana GN=AK3 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/544 (75%), Positives = 470/544 (86%), Gaps = 6/544 (1%)
Query: 1 MANTMQFSSI----IQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSC 56
MA +MQF + + NS + S + F+ VSS+ +V SC LRV+C
Sbjct: 1 MAASMQFYGVKTPELALNSKRIE-FSSKGLNFSALVSSARVFSRNVDRSCKNIA-LRVTC 58
Query: 57 EGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIV 116
E R++++ERK SE ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E+PV+V
Sbjct: 59 EAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDEKPVVV 118
Query: 117 LSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEEL 176
LSAM KTTNKLL+AGEKAV CGVTN+ I+ELS++K+LH RT ELG++ ++IA HLE L
Sbjct: 119 LSAMAKTTNKLLMAGEKAVCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAEHLEGL 178
Query: 177 EQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236
EQLLKG+AM+KELT RSRDYLVSFGECMSTR+FAAYLNKIG KARQYDAF+IG ITTDDF
Sbjct: 179 EQLLKGVAMMKELTLRSRDYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGIITTDDF 238
Query: 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGK 296
TNADILEATYPAV+K+L GDW + A+P+VTGFLGK WR+CA+TTLGRGGSDLTATTIGK
Sbjct: 239 TNADILEATYPAVSKKLLGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTATTIGK 298
Query: 297 ALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREG 356
ALGL+EIQVWKDVDGVLTCDPNI+ A+PVP+LTFDEAAELAYFGAQVLHP SMRPAREG
Sbjct: 299 ALGLREIQVWKDVDGVLTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMRPAREG 358
Query: 357 DIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416
+IPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF
Sbjct: 359 NIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGFLAKVF 418
Query: 417 STFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI 476
STFE LGISVDVVATSEVS+SLTLDPSK SRELIQ ELD VVEELEKIA+VNLL+HRSI
Sbjct: 419 STFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQHELDQVVEELEKIAVVNLLRHRSI 478
Query: 477 ISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
ISLIGNVQRSS ILEK FRVLR +G+NVQMISQGASKVNISLIVNDDEAE CV+ALH F
Sbjct: 479 ISLIGNVQRSSFILEKGFRVLRTNGINVQMISQGASKVNISLIVNDDEAEHCVKALHSAF 538
Query: 537 FESD 540
FE+D
Sbjct: 539 FETD 542
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Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 2EC: .EC: 4 |
| >sp|O23653|AK2_ARATH Aspartokinase 2, chloroplastic OS=Arabidopsis thaliana GN=AK2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 832 bits (2148), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/530 (77%), Positives = 462/530 (87%), Gaps = 10/530 (1%)
Query: 20 ALSWQRFAFAK---CVS----SSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENL 72
ALS +R FA C S SSS + V +SC G LRVSCE R+D+++RK+ E
Sbjct: 15 ALSSKRLEFASKGACFSVTLPSSSAVFRDVEHSCRNIG-LRVSCEALRVDLLQRKEPETC 73
Query: 73 GVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGE 132
+ K+LTCVMKFGGSS+ SAERM+EVA LILSFP+ERPVIVLSAMGKTTNKLL AGE
Sbjct: 74 DSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPDERPVIVLSAMGKTTNKLLKAGE 133
Query: 133 KAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPR 192
KAV+CGVTN+ I+ELSF+K+LH RT ELG++ ++I HLE L QLLKGI+M+KELT R
Sbjct: 134 KAVTCGVTNVESIEELSFIKELHLRTAHELGVETTVIEKHLEGLHQLLKGISMMKELTLR 193
Query: 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKR 252
+RDYLVSFGECMSTR+F+AYLNKIG KARQYDAF+IGFITTDDFTNADILEATYPAV+K
Sbjct: 194 TRDYLVSFGECMSTRLFSAYLNKIGHKARQYDAFEIGFITTDDFTNADILEATYPAVSKT 253
Query: 253 LHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
L GDW + A+P+VTG+LGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGV
Sbjct: 254 LVGDWSKENAVPVVTGYLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGV 313
Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
LTCDPNI+P A+ VPYLTFDEAAELAYFGAQVLHP SMRPAR+GDIPVRVKNSYNP APG
Sbjct: 314 LTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSMRPARDGDIPVRVKNSYNPTAPG 373
Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
T+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF+TFEDLGISVDVVATS
Sbjct: 374 TVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYGFLAKVFTTFEDLGISVDVVATS 433
Query: 433 EVSLSLTLDPSKLWSRELIQQ--ELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLIL 490
EVS+SLTLDP+KLW RELIQ+ ELD++VEELEKIA+V LLQ RSIISLIGNVQ+SSLIL
Sbjct: 434 EVSISLTLDPAKLWGRELIQRVNELDNLVEELEKIAVVKLLQRRSIISLIGNVQKSSLIL 493
Query: 491 EKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
EK F+V R +GVNVQMISQGASKVNISLIVND+EAEQCVRALH FFE+D
Sbjct: 494 EKVFQVFRSNGVNVQMISQGASKVNISLIVNDEEAEQCVRALHSAFFETD 543
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Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q9LYU8|AK1_ARATH Aspartokinase 1, chloroplastic OS=Arabidopsis thaliana GN=AK1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 805 bits (2080), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/496 (80%), Positives = 443/496 (89%), Gaps = 5/496 (1%)
Query: 53 RVSCEGAR---IDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFP 109
+VS G+R V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP
Sbjct: 56 KVSGSGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFP 114
Query: 110 NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSII 169
E PVIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I
Sbjct: 115 EESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVI 174
Query: 170 ATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229
T+LEELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IG
Sbjct: 175 LTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 234
Query: 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDL 289
FITTDDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDL
Sbjct: 235 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDL 294
Query: 290 TATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
TATTIGKALGL+EIQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQVLHPQS
Sbjct: 295 TATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 354
Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
MRPAREG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ
Sbjct: 355 MRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQV 414
Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVN 469
GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQELDHVVEELEKIA+VN
Sbjct: 415 GFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVN 474
Query: 470 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCV 529
LL+ R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE CV
Sbjct: 475 LLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCV 534
Query: 530 RALHETFFES-DLANL 544
+ALH++FFES DL+ L
Sbjct: 535 QALHKSFFESGDLSEL 550
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Involved in the first step of essential amino acids lysine, threonine, methionine and isoleucine synthesis via the aspartate-family pathway. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|Q57991|AK_METJA Probable aspartokinase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ0571 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (718), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 175/485 (36%), Positives = 283/485 (58%), Gaps = 43/485 (8%)
Query: 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVL--SAMGKTTNKLLLAGEKAVSCG 138
+T VMKFGG+S+ S ER+R VA+++ E +V+ SAM + TN L+ ++A+
Sbjct: 1 MTTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALD-- 58
Query: 139 VTNISCI-DELSFVKDLHHRTVDELGID--------RSIIATHLEELEQLLKGIAMLKEL 189
V +I+ + D + F+++ H++ ++E I + II + +EELE++L G+A L EL
Sbjct: 59 VRDIAKVGDFIKFIREKHYKAIEE-AIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGEL 117
Query: 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI--LEATYP 247
TP+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A + LE
Sbjct: 118 TPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLE---- 173
Query: 248 AVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307
V +RL + + IP+VTGF+G ITTLGRGGSD +A IG L I++W
Sbjct: 174 -VKERLL-PLLKEGIIPVVTGFIG-TTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWT 230
Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 367
DV GV T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IP+ VKN++
Sbjct: 231 DVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFE 290
Query: 368 PNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
P + GTLI +MS +++ +I +NV +++I M+G G A++F + ++V
Sbjct: 291 PESEGTLITNDMEMSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVI 350
Query: 428 VVA--TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI--------- 476
+++ +SE ++SL + S E + + L + E + L + I
Sbjct: 351 LISQGSSETNISLVV------SEEDVDKALKALKREFGDFGKKSFLNNNLIRDVSVDKDV 404
Query: 477 --ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
IS++G R + I K F + SG N++MI+QG+S+VNIS ++++ + CVR LH
Sbjct: 405 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 464
Query: 534 ETFFE 538
E F E
Sbjct: 465 EKFIE 469
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Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|P08660|AK3_ECOLI Lysine-sensitive aspartokinase 3 OS=Escherichia coli (strain K12) GN=lysC PE=1 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 165/470 (35%), Positives = 252/470 (53%), Gaps = 41/470 (8%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ A++ G+
Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYLV 198
++L ++++ ++ L I EE+E+LL+ I +L E +P D LV
Sbjct: 60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD-----ILEATYPAVAKRL 253
S GE MST +F L + V+A+ +D + T D F A+ + E + RL
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRL 174
Query: 254 HGDWITDLAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
+ + I GF+G RT TTLGRGGSD TA + +AL + +W DV G
Sbjct: 175 NEGLV------ITQGFIGSENKGRT---TTLGRGGSDYTAALLAEALHASRVDIWTDVPG 225
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
+ T DP + AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A
Sbjct: 226 IYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAG 285
Query: 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431
GTL+ + + + ++ L+RN T+L + S ML GFLA+VF ISVD++ T
Sbjct: 286 GTLVCNKTE-NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT 344
Query: 432 SEVSLSLTL--DPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSL 488
SEVS++LTL S L+ Q L + EL + V + + ++++LIGN + ++
Sbjct: 345 SEVSVALTLDTTGSTSTGDTLLTQSL---LMELSALCRVEVEEGLALVALIGNDLSKACG 401
Query: 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
+ ++ F VL N++MI GAS N+ +V ++AEQ V+ LH FE
Sbjct: 402 VGKEVFGVL--EPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
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Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|P00561|AK1H_ECOLI Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Escherichia coli (strain K12) GN=thrA PE=1 SV=2 | Back alignment and function description |
|---|
Score = 204 bits (518), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 152/472 (32%), Positives = 244/472 (51%), Gaps = 26/472 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSC--GVT 140
V+KFGG+S+A+AER VA+++ S + V VLSA K TN L+ EK +S +
Sbjct: 3 VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALP 62
Query: 141 NISCIDELSFVKDLHHRTVDELGID----RSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
NIS + + F + L + G ++ + +++ +L GI++L +
Sbjct: 63 NISDAERI-FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAA 121
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--TNADILEATYPAVAKRLH 254
L+ GE MS I A L G D + + + + DI E+T A R+
Sbjct: 122 LICRGEKMSIAIMAGVLEARGHNVTVIDPVE-KLLAVGHYLESTVDIAESTRRIAASRIP 180
Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
D + ++ GF + + LGR GSD +A + L ++W DVDGV T
Sbjct: 181 ADHMV-----LMAGFTAGNEKG-ELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYT 234
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
CDP P A+ + +++ EA EL+YFGA+VLHP+++ P + IP +KN+ NP APGTL
Sbjct: 235 CDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTL 294
Query: 375 IRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS 432
I SRD + + I N+ M + M G G A+VF+ ISV ++ ++S
Sbjct: 295 IGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSS 354
Query: 433 EVSLSLTLDPSK-LWSRELIQQELDHVVEE--LEKIAIVNLLQHRSIISLIGNVQRS-SL 488
E S+S + S + + +Q+E ++E LE +A+ L +IIS++G+ R+
Sbjct: 355 EYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERL---AIISVVGDGMRTLRG 411
Query: 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
I K F L R+ +N+ I+QG+S+ +IS++VN+D+A VR H+ F +D
Sbjct: 412 ISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTD 463
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Escherichia coli (strain K12) (taxid: 83333) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|O60163|AK_SCHPO Probable aspartokinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC19F5.04 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 202 bits (513), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 147/497 (29%), Positives = 250/497 (50%), Gaps = 59/497 (11%)
Query: 84 VMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGK------TTNKLLLAGEKAV 135
V KFGG+S+ + +VA+ LS +R +V SA TT +L+ A E A+
Sbjct: 17 VQKFGGTSVGKFPIKIAVDVAKEYLS--TKRVALVCSARSTDTKAEGTTTRLIRATEAAL 74
Query: 136 SCGVTNISCI------DELSFVKDLHHRTVDELGI-DRSIIATHLE--ELEQLLKGIAML 186
V ++ + D + +D + ++GI D I A H + ELEQ L I +L
Sbjct: 75 RPAVGSVHDLVRIIETDHVQAARDF----IQDVGIQDELIDAFHADCVELEQYLNAIRVL 130
Query: 187 KELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATY 246
E++PR+RD ++ GE +S R AA L G+ + D I D+ L+A++
Sbjct: 131 SEVSPRTRDLVIGMGERLSCRFMAAVLKDQGIDSEFIDMSHI----IDEQREWRNLDASF 186
Query: 247 PAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304
A +T + +P+VTGF G ++ +GRG +D A + L E+Q
Sbjct: 187 YAYLASQLASKVTAVGNKVPVVTGFFGMV-PGGLLSQIGRGYTDFCAALLAVGLNADELQ 245
Query: 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKN 364
+WK+VDG+ T DP P A+ +P +T +EAAEL Y+G++V+HP +M IP+R+KN
Sbjct: 246 IWKEVDGIFTADPRKVPTARLLPLITPEEAAELTYYGSEVIHPFTMSQVVHARIPIRIKN 305
Query: 365 SYNPNAPGTLIRR----------------------SRDMSKAVLTSIVLKRNVTMLDIVS 402
NP GT+I S ++ T++ +K + +++I S
Sbjct: 306 VGNPRGKGTVIFPDTISRHGSATPPHPPKIMPDDISASLANKGATAVTIKDTIMVINIQS 365
Query: 403 TRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEEL 462
R + +GFLA +F+ + ++VD++ TSEV +S+ L E + EL
Sbjct: 366 NRKISAHGFLASIFAILDKYKLAVDLITTSEVHVSMAL------YEESDDGNMHEAFVEL 419
Query: 463 EKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVN 521
++ +++L +I+SL+G R++ + F L + +N++MISQGAS++NIS +++
Sbjct: 420 RRLGTLDILHGLAILSLVGKHMRNTTGYAGRMFCKLAEAQINIEMISQGASEINISCVID 479
Query: 522 DDEAEQCVRALHETFFE 538
+ A + + +H+ E
Sbjct: 480 EKMAVKALNVIHKELLE 496
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2 EC: . EC: 7 EC: . EC: 2 EC: . EC: 4 |
| >sp|P27725|AK1H_SERMA Bifunctional aspartokinase/homoserine dehydrogenase 1 OS=Serratia marcescens GN=thrA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 188 bits (478), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 140/474 (29%), Positives = 239/474 (50%), Gaps = 30/474 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGG+S+A+AER VA+++ S + V VLSA K TN L+ +K V+
Sbjct: 3 VLKFGGTSVANAERFLRVADIMESNARQGQVATVLSAPAKITNHLVAMIDKTVAGQDILP 62
Query: 143 SCIDELSFVKDLHHRTVDEL-GID----RSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
+ D DL L G + + ++ +L+Q+L G+++L + +
Sbjct: 63 NMSDAERIFADLLSGLAQALPGFEYDRLKGVVDQEFAQLKQVLHGVSLLGQCPDSVNAAI 122
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--TNADILEATYPAVAKRLHG 255
+ GE +S I G + + + + + DI E+T A +
Sbjct: 123 ICRGEKLSIAIMEGVFRAKGYPVTVINPVE-KLLAQGHYLESTVDIAESTLRIAAAAIPA 181
Query: 256 DWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
D I ++ GF + + LGR GSD +A + L ++W DVDGV TC
Sbjct: 182 DHIV-----LMAGFTAGNDKG-ELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTC 235
Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
DP P A+ + +++ EA EL+YFGA+VLHP+++ P + IP +KN+ NP APGTLI
Sbjct: 236 DPRTVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTSNPQAPGTLI 295
Query: 376 RRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSE 433
+ + + I N+ M+++ M G G A+VF+ GISV ++ ++SE
Sbjct: 296 GKDSTDADMPVKGITNLNNMAMINVSGPGMKGMVGMAARVFAVMSRAGISVVLITQSSSE 355
Query: 434 VSLSLTLDPSKLW-SRELIQQEL-----DHVVEELEKIAIVNLLQHRSIISLIGNVQRS- 486
S+S + +L +R +++E D V++ L+ +++ +IIS++G+ R+
Sbjct: 356 YSISFCVPQGELQRARRALEEEFYLELKDGVLDPLD------VMERLAIISVVGDGMRTL 409
Query: 487 SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
I + F L R+ +N+ I+QG+S+ +IS++V++D A VR H+ F +D
Sbjct: 410 RGISARFFSALARANINIVAIAQGSSERSISVVVSNDSATTGVRVSHQMLFNTD 463
|
Serratia marcescens (taxid: 615) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|O81852|AKH2_ARATH Bifunctional aspartokinase/homoserine dehydrogenase 2, chloroplastic OS=Arabidopsis thaliana GN=AKHSDH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 183 bits (464), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 148/532 (27%), Positives = 273/532 (51%), Gaps = 55/532 (10%)
Query: 43 RNSCGGRGGLRVSCE------GARIDVIERKKSENLGVDE---SEKQLTCVMKFGGSSLA 93
R + GG GGL + CE A + + NL VD+ + ++ V KFGG+ +
Sbjct: 43 RKTTGGGGGL-IRCELPDFHLSATATTVSGVSTVNL-VDQVQIPKGEMWSVHKFGGTCVG 100
Query: 94 SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153
+++R+R VAE+I++ +ER ++V+SAM K T+ + KA S + S + L V +
Sbjct: 101 NSQRIRNVAEVIINDNSERKLVVVSAMSKVTDMMYDLIRKAQS---RDDSYLSALEAVLE 157
Query: 154 LHHRTVDEL--GIDRSIIATHLEE----LEQLLKGIAMLKELTPRSRDYLVSFGECMSTR 207
H T +L G D + +HL L+ +L+ I + + D++ GE S +
Sbjct: 158 KHRLTARDLLDGDDLASFLSHLHNDISNLKAMLRAIYIAGHASESFSDFVAGHGELWSAQ 217
Query: 208 IFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW--ITDLAIPI 265
+ + + K G++ + D D+ + T+++ ++ + KRL W + I I
Sbjct: 218 MLSYVVRKTGLECKWMDTRDVLIVNP---TSSNQVDPDFGESEKRLD-KWFSLNPSKIII 273
Query: 266 VTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP 325
TGF+ + TTL R GSD +A +G L +++ +W DVDGV + DP A
Sbjct: 274 ATGFIASTPQNIP-TTLKRDGSDFSAAIMGALLRARQVTIWTDVDGVYSADPRKVNEAVI 332
Query: 326 VPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI-RRSRDMSKA 384
+ L++ EA E++YFGA VLHP+++ P +IP+ ++N +N +APGT+I + D
Sbjct: 333 LQTLSYQEAWEMSYFGANVLHPRTIIPVMRYNIPIVIRNIFNLSAPGTIICQPPEDDYDL 392
Query: 385 VLTSIVLK----RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSLSL 438
LT+ V N+ ++++ T M G G + +F +D+G +V ++ A+SE S+
Sbjct: 393 KLTTPVKGFATIDNLALINVEGTGMAGVPGTASDIFGCVKDVGANVIMISQASSEHSVCF 452
Query: 439 TLDPSKLWSRELIQQELDHVVEELE----------KIAIVNLLQHRSIISLIGNVQRSSL 488
+ ++E++ V E L +++ + ++ + SI++ +G S+
Sbjct: 453 AVP----------EKEVNAVSEALRSRFSEALQAGRLSQIEVIPNCSILAAVGQKMASTP 502
Query: 489 ILE-KAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539
+ F L ++ +NV+ ISQG S+ N+++++ +++ + +RA+H FF S
Sbjct: 503 GVSCTLFSALAKANINVRAISQGCSEYNVTVVIKREDSVKALRAVHSRFFLS 554
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
| >sp|P49079|AKH1_MAIZE Bifunctional aspartokinase/homoserine dehydrogenase 1, chloroplastic OS=Zea mays GN=AKHSDH1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 134/484 (27%), Positives = 246/484 (50%), Gaps = 31/484 (6%)
Query: 75 DESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKA 134
D + + V KFGG+ + ++ER+ VA+++L P+ER ++V+SAM K T+ + KA
Sbjct: 87 DLPKGDMWSVHKFGGTCMGTSERIHNVADIVLRDPSERKLVVVSAMSKVTDMMYNLVNKA 146
Query: 135 VSCGVTNISCIDELSFVKDLHHRTVDEL--GIDRSIIATHLE----ELEQLLKGIAMLKE 188
S + I+ +DE V D H T +L G D + + L L+ +L+ I +
Sbjct: 147 QSRDDSYIAVLDE---VFDKHMTTAKDLLAGEDLARFLSQLHADISNLKAMLRAIYIAGH 203
Query: 189 LTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPA 248
T D++V GE S ++ + + K G D ++ + + A+ ++ Y
Sbjct: 204 ATESFSDFVVGHGELWSAQMLSYAIQKSGTPCSWMDTREVLVVNP---SGANQVDPDYLE 260
Query: 249 VAKRLHGDWITDLAIP--IVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306
KRL W + I TGF+ TTL R GSD +A IG + +++ +W
Sbjct: 261 SEKRLE-KWFSRCPAETIIATGFIASTPENIP-TTLKRDGSDFSAAIIGSLVKARQVTIW 318
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
DVDGV + DP A + L++ EA E++YFGA VLHP+++ P + +IP+ ++N +
Sbjct: 319 TDVDGVFSADPRKVSEAVILSTLSYQEAWEMSYFGANVLHPRTIIPVMKYNIPIVIRNIF 378
Query: 367 NPNAPGTLI-----RRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFED 421
N +APGT+I + D+ +A + + + ++++ T M G G +F +D
Sbjct: 379 NTSAPGTMICQQPANENGDL-EACVKAFATIDKLALVNVEGTGMAGVPGTANAIFGAVKD 437
Query: 422 LGISVDVV--ATSEVSLSLTLDPSKLWSRELIQQELDHVVEE---LEKIAIVNLLQHRSI 476
+G +V ++ A+SE S+ + ++ L+ L E +++ V ++ + SI
Sbjct: 438 VGANVIMISQASSEHSVCFAVPEKEV---ALVSAALHARFREALAAGRLSKVEVIHNCSI 494
Query: 477 ISLIG-NVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535
++ +G + + + F L ++ +NV+ I+QG S+ NI++++ ++ + +RA H
Sbjct: 495 LATVGLRMASTPGVSATLFDALAKANINVRAIAQGCSEYNITIVLKQEDCVRALRAAHSR 554
Query: 536 FFES 539
FF S
Sbjct: 555 FFLS 558
|
Zea mays (taxid: 4577) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| 225451597 | 567 | PREDICTED: aspartokinase 3, chloroplasti | 0.978 | 0.961 | 0.813 | 0.0 | |
| 255543571 | 556 | aspartate kinase, putative [Ricinus comm | 0.949 | 0.951 | 0.826 | 0.0 | |
| 224065286 | 486 | predicted protein [Populus trichocarpa] | 0.868 | 0.995 | 0.871 | 0.0 | |
| 224131436 | 487 | predicted protein [Populus trichocarpa] | 0.870 | 0.995 | 0.865 | 0.0 | |
| 356559490 | 567 | PREDICTED: aspartokinase 1, chloroplasti | 0.908 | 0.892 | 0.825 | 0.0 | |
| 296082278 | 479 | unnamed protein product [Vitis vinifera] | 0.843 | 0.981 | 0.871 | 0.0 | |
| 351726461 | 564 | precursor monofunctional aspartokinase [ | 0.908 | 0.897 | 0.817 | 0.0 | |
| 359473780 | 575 | PREDICTED: aspartokinase 1, chloroplasti | 0.996 | 0.965 | 0.762 | 0.0 | |
| 15232838 | 559 | aspartokinase 3 [Arabidopsis thaliana] g | 0.965 | 0.962 | 0.757 | 0.0 | |
| 449452022 | 474 | PREDICTED: aspartokinase 2, chloroplasti | 0.843 | 0.991 | 0.871 | 0.0 |
| >gi|225451597|ref|XP_002275779.1| PREDICTED: aspartokinase 3, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 909 bits (2349), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/547 (81%), Positives = 488/547 (89%), Gaps = 2/547 (0%)
Query: 9 SIIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKK 68
++ + SLHCQ L QR F V+ SRLC SV++S + LRV C G IDV+E+ K
Sbjct: 16 AVSSRRSLHCQPLWSQRVDFTLSVAGGSRLCRSVKDS-SRKNVLRVCCSGGSIDVLEKSK 74
Query: 69 SENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLL 128
+EN D +QLT MKFGGSS+ASAERMREVA+LILSFPNERPVIVLSAMGKTTNKLL
Sbjct: 75 TENQTTDGVTEQLTIAMKFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLL 134
Query: 129 LAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE 188
LAGEKAVSCGV+N SCIDEL+F+K+LH RT DELG+D S+I+ HLEELEQLLKGIAM+KE
Sbjct: 135 LAGEKAVSCGVSNASCIDELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKE 194
Query: 189 LTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPA 248
LT R++DYLVSFGECMSTR+FAAY+NKIG KARQYDAFDIGFITTDDFTNADILEATYPA
Sbjct: 195 LTLRTKDYLVSFGECMSTRLFAAYMNKIGAKARQYDAFDIGFITTDDFTNADILEATYPA 254
Query: 249 VAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308
VAKRL GDWI+D AIPIVTGFLGK WR+CA+TTLGRGGSDLTATT+GKALGL+EIQVWKD
Sbjct: 255 VAKRLLGDWISDPAIPIVTGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKD 314
Query: 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP 368
VDGVLTCDPNI+ HAKPV YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN
Sbjct: 315 VDGVLTCDPNIYSHAKPVEYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNR 374
Query: 369 NAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
NAPGTLI R+RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FE+LGISVDV
Sbjct: 375 NAPGTLITRTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDV 434
Query: 429 VATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL 488
VATSEVS+SLTLDPSKLWSRELIQQELDHVVEELEKIA+VNLLQHRSIISLIGN+Q SSL
Sbjct: 435 VATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLQHRSIISLIGNIQMSSL 494
Query: 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANLDCVC 548
ILEKAF VLR GVNVQMISQGASKVNISLIVNDD+AE+CVRALH FFES L+ +D C
Sbjct: 495 ILEKAFHVLRTKGVNVQMISQGASKVNISLIVNDDQAEKCVRALHSAFFES-LSEVDREC 553
Query: 549 GSENNSS 555
S+N S+
Sbjct: 554 QSDNGST 560
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543571|ref|XP_002512848.1| aspartate kinase, putative [Ricinus communis] gi|223547859|gb|EEF49351.1| aspartate kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 889 bits (2297), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 448/542 (82%), Positives = 481/542 (88%), Gaps = 13/542 (2%)
Query: 10 IIQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVR-NSCGGRGGLRVSCEGARIDVIERKK 68
+ K +L CQA FA + V SS L SV+ +SC R LRVSCEG IDV+ER K
Sbjct: 17 VFPKKALQCQAFG---FANSVAVPSSKGLFKSVKFSSCTSRV-LRVSCEGRNIDVLERNK 72
Query: 69 SENL--GVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK 126
SE+ G ESEKQ TCVMKFGGSSLASAERMREVA+LILSF +E P+IVLSAMGKTTNK
Sbjct: 73 SESSIDGNVESEKQFTCVMKFGGSSLASAERMREVADLILSFADETPIIVLSAMGKTTNK 132
Query: 127 LLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAML 186
LLLAGEKAV CGVTN++ IDELSF+K+LH RTV+EL +D+S++ATHLEELEQLL GIAM+
Sbjct: 133 LLLAGEKAVCCGVTNVNAIDELSFIKELHLRTVEELKVDKSVVATHLEELEQLLNGIAMM 192
Query: 187 KELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATY 246
KELTPR+RDYLVSFGECMSTRIFAAYLNKIG KARQYDAFD+G ITTDDFTNADILEATY
Sbjct: 193 KELTPRTRDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDMGIITTDDFTNADILEATY 252
Query: 247 PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306
PAVAKRLHGDWI+D AIPIVTGFLGK WR+CAITTLGRGGSDLTATTIGKALGL+EIQVW
Sbjct: 253 PAVAKRLHGDWISDPAIPIVTGFLGKGWRSCAITTLGRGGSDLTATTIGKALGLREIQVW 312
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
KDVDGVLTCDPNI+ A+PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY
Sbjct: 313 KDVDGVLTCDPNIYQRAEPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 372
Query: 367 NPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISV 426
NPNAPGTLI R+RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FEDLGISV
Sbjct: 373 NPNAPGTLITRARDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEDLGISV 432
Query: 427 DVVATSEVSLSLTLDPSKLWSRELIQQ--ELDHVVEELEKIAIVNLLQHRSIISLIGNVQ 484
DVVATSEVS+SLTLDPSKLWSRELIQQ ELDHV+EELEKIA+VNLLQHRSIISLIGNVQ
Sbjct: 433 DVVATSEVSISLTLDPSKLWSRELIQQASELDHVLEELEKIAVVNLLQHRSIISLIGNVQ 492
Query: 485 RSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANL 544
RSSLILEK F VLR +GVNVQMISQGASKVNISLIVNDDEAEQCVR FF S A L
Sbjct: 493 RSSLILEKVFNVLRTNGVNVQMISQGASKVNISLIVNDDEAEQCVR----EFFPSHPARL 548
Query: 545 DC 546
C
Sbjct: 549 AC 550
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224065286|ref|XP_002301756.1| predicted protein [Populus trichocarpa] gi|222843482|gb|EEE81029.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 888 bits (2294), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/490 (87%), Positives = 459/490 (93%), Gaps = 6/490 (1%)
Query: 53 RVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNER 112
+VSCE A +D++E K +N E+EK++TCVMKFGGSS+ASAERMREVAELILSFPNE
Sbjct: 1 KVSCEAASVDLLETNKIDN----EAEKKITCVMKFGGSSVASAERMREVAELILSFPNES 56
Query: 113 PVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATH 172
PVIVLSAMGKTTNKLLLAGEKAVSCGVTN+ I+ELSF+K+LH+RTV EL +D S+IA H
Sbjct: 57 PVIVLSAMGKTTNKLLLAGEKAVSCGVTNVDSIEELSFIKELHNRTVKELEVDESVIAKH 116
Query: 173 LEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232
LEELEQLLKGIAM+KELTPR+RDYLVSFGECMSTRIFAAY+NKIG KARQYDAF+IGFIT
Sbjct: 117 LEELEQLLKGIAMMKELTPRTRDYLVSFGECMSTRIFAAYMNKIGAKARQYDAFEIGFIT 176
Query: 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTAT 292
TDDFTNADILEATYPAVAK LHGDWI+D AIPIVTGFLGK WR+CAITTLGRGGSDLTAT
Sbjct: 177 TDDFTNADILEATYPAVAKSLHGDWISDPAIPIVTGFLGKGWRSCAITTLGRGGSDLTAT 236
Query: 293 TIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
TIGKALGL EIQVWKDVDGVLTCDPNI+PHA+PVPYLTFDEAAELAYFGAQVLHPQSMRP
Sbjct: 237 TIGKALGLSEIQVWKDVDGVLTCDPNIYPHAEPVPYLTFDEAAELAYFGAQVLHPQSMRP 296
Query: 353 AREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412
ARE DIPVRVKNSYNPNAPGTLI R+RDMSKAVLTSIVLKRNVTMLDI STRMLGQ+GFL
Sbjct: 297 AREADIPVRVKNSYNPNAPGTLITRARDMSKAVLTSIVLKRNVTMLDIASTRMLGQFGFL 356
Query: 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ--ELDHVVEELEKIAIVNL 470
AKVFSTFEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQ ELDHVVEELEKIA+VNL
Sbjct: 357 AKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAVVNL 416
Query: 471 LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVR 530
LQ RSIISLIGNVQRSSLILEKAF VLR GVNVQMISQGASKVNISLIVNDDEAEQCV+
Sbjct: 417 LQRRSIISLIGNVQRSSLILEKAFHVLRTLGVNVQMISQGASKVNISLIVNDDEAEQCVK 476
Query: 531 ALHETFFESD 540
+LH+ FFE+D
Sbjct: 477 SLHKAFFETD 486
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224131436|ref|XP_002321084.1| predicted protein [Populus trichocarpa] gi|222861857|gb|EEE99399.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 880 bits (2273), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/491 (86%), Positives = 454/491 (92%), Gaps = 6/491 (1%)
Query: 52 LRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNE 111
L+VSCE A +DV+E K++N ++E QLTCVMKFGGSSLASAERMREVAELILSF NE
Sbjct: 1 LKVSCEAASVDVLEMNKTDN----QAETQLTCVMKFGGSSLASAERMREVAELILSFRNE 56
Query: 112 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIAT 171
RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN+ I+ELS +K+LH T ELG+D S+IA
Sbjct: 57 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNVESIEELSIIKELHLLTAKELGVDESVIAK 116
Query: 172 HLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231
HLEELEQLLKGIAM+KELTPR++DYLVSFGECMSTRIFAAY+NKIG KARQYDAF IGFI
Sbjct: 117 HLEELEQLLKGIAMMKELTPRTKDYLVSFGECMSTRIFAAYMNKIGAKARQYDAFKIGFI 176
Query: 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
TTDDFTNADILEATYPAVA+ LHGDWI D AIPIVTGFLGK WR+CAITTLGRGGSDLTA
Sbjct: 177 TTDDFTNADILEATYPAVAQSLHGDWIRDTAIPIVTGFLGKGWRSCAITTLGRGGSDLTA 236
Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
TTIGKALGL+EIQVWKDVDGVLTCDPNI+PHA+PVPYLTFDEAAELAYFGAQVLHPQSMR
Sbjct: 237 TTIGKALGLREIQVWKDVDGVLTCDPNIYPHAEPVPYLTFDEAAELAYFGAQVLHPQSMR 296
Query: 352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
PAREGDIPVRVKNSYN NAPGTLI R+RDMSKAVLTSIV+KRNVTMLDIVSTRMLGQ+GF
Sbjct: 297 PAREGDIPVRVKNSYNSNAPGTLITRTRDMSKAVLTSIVMKRNVTMLDIVSTRMLGQFGF 356
Query: 412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ--ELDHVVEELEKIAIVN 469
LAKVFS FEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQ ELDHVVEELEKIA+VN
Sbjct: 357 LAKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAVVN 416
Query: 470 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCV 529
LLQHRSIISLIGNVQRSSLILEK F VL G+NVQMISQGASKVNISLIVNDDEAEQCV
Sbjct: 417 LLQHRSIISLIGNVQRSSLILEKVFNVLHIKGINVQMISQGASKVNISLIVNDDEAEQCV 476
Query: 530 RALHETFFESD 540
R+LH FFESD
Sbjct: 477 RSLHSAFFESD 487
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356559490|ref|XP_003548032.1| PREDICTED: aspartokinase 1, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 855 bits (2209), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/511 (82%), Positives = 459/511 (89%), Gaps = 5/511 (0%)
Query: 40 VSVRNSCGGRGGLRVS-CEGARI-DVIERKKSENLGVD-ESEKQLTCVMKFGGSSLASAE 96
V R G R V+ C+ + DVIE+ +EN V E E TCVMKFGGSS+ASAE
Sbjct: 39 VCARRVWGNRVAFNVTTCKASTTSDVIEKSVTENRVVSIEGETSFTCVMKFGGSSVASAE 98
Query: 97 RMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156
RM+EVA LILSFP ERP++VLSAMGKTTNKLLLAGEKAVSCGVTN+S I+EL F+KDLH
Sbjct: 99 RMKEVATLILSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVTNVSSIEELCFIKDLHL 158
Query: 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKI 216
RTVD+LG+D S+IA HLEELEQLLKGIAM+KELT R++DYLVSFGECMSTRIFAAYLNKI
Sbjct: 159 RTVDQLGVDGSVIAKHLEELEQLLKGIAMMKELTKRTQDYLVSFGECMSTRIFAAYLNKI 218
Query: 217 GVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT 276
GVKARQYDAF+IGFITTDDFTNADILEATYPAVAKRLHGDW++D AI IVTGFLGKA ++
Sbjct: 219 GVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLSDPAIAIVTGFLGKAQKS 278
Query: 277 CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE 336
CA+TTLGRGGSDLTAT IGKALGL EIQVWKDVDGVLTCDPNI+P A+PVPYLTFDEAAE
Sbjct: 279 CAVTTLGRGGSDLTATAIGKALGLPEIQVWKDVDGVLTCDPNIYPKAEPVPYLTFDEAAE 338
Query: 337 LAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVT 396
LAYFGAQVLHPQSMRPARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVT
Sbjct: 339 LAYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLITKARDMSKAVLTSIVLKRNVT 398
Query: 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ--E 454
MLDIVSTRMLGQYGFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ E
Sbjct: 399 MLDIVSTRMLGQYGFLAKVFSIFEELGISVDVVATSEVSVSLTLDPSKLWSRELIQQASE 458
Query: 455 LDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKV 514
LDHVVEELEKIA+VNLLQ+RSIISLIGNVQRSSLILEKAFRVLR G+ VQMISQGASKV
Sbjct: 459 LDHVVEELEKIAVVNLLQNRSIISLIGNVQRSSLILEKAFRVLRTLGITVQMISQGASKV 518
Query: 515 NISLIVNDDEAEQCVRALHETFFESDLANLD 545
NISL+VND EAEQCVRALH FFES+L+ L+
Sbjct: 519 NISLVVNDSEAEQCVRALHLAFFESELSELE 549
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082278|emb|CBI21283.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 851 bits (2199), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/473 (87%), Positives = 444/473 (93%), Gaps = 3/473 (0%)
Query: 85 MKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISC 144
MKFGGSS+ASAERMREVA+LILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGV+N SC
Sbjct: 1 MKFGGSSVASAERMREVADLILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVSNASC 60
Query: 145 IDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECM 204
IDEL+F+K+LH RT DELG+D S+I+ HLEELEQLLKGIAM+KELT R++DYLVSFGECM
Sbjct: 61 IDELTFIKELHLRTADELGVDSSVISAHLEELEQLLKGIAMMKELTLRTKDYLVSFGECM 120
Query: 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIP 264
STR+FAAY+NKIG KARQYDAFDIGFITTDDFTNADILEATYPAVAKRL GDWI+D AIP
Sbjct: 121 STRLFAAYMNKIGAKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLLGDWISDPAIP 180
Query: 265 IVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAK 324
IVTGFLGK WR+CA+TTLGRGGSDLTATT+GKALGL+EIQVWKDVDGVLTCDPNI+ HAK
Sbjct: 181 IVTGFLGKGWRSCAVTTLGRGGSDLTATTLGKALGLREIQVWKDVDGVLTCDPNIYSHAK 240
Query: 325 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA 384
PV YLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN NAPGTLI R+RDMSKA
Sbjct: 241 PVEYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNRNAPGTLITRTRDMSKA 300
Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
VLTSIVLKRNVTMLDIVSTRMLGQ+GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSK
Sbjct: 301 VLTSIVLKRNVTMLDIVSTRMLGQFGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSK 360
Query: 445 LWSRELIQQ--ELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGV 502
LWSRELIQQ ELDHVVEELEKIA+VNLLQHRSIISLIGN+Q SSLILEKAF VLR GV
Sbjct: 361 LWSRELIQQASELDHVVEELEKIAVVNLLQHRSIISLIGNIQMSSLILEKAFHVLRTKGV 420
Query: 503 NVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANLDCVCGSENNSS 555
NVQMISQGASKVNISLIVNDD+AE+CVRALH FFES L+ +D C S+N S+
Sbjct: 421 NVQMISQGASKVNISLIVNDDQAEKCVRALHSAFFES-LSEVDRECQSDNGST 472
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351726461|ref|NP_001238151.1| precursor monofunctional aspartokinase [Glycine max] gi|5305740|gb|AAD41796.1| precursor monofunctional aspartokinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 850 bits (2197), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/510 (81%), Positives = 456/510 (89%), Gaps = 4/510 (0%)
Query: 40 VSVRNSCGGRGGLRVS-CEGARIDVIERKKSENLGVD-ESEKQLTCVMKFGGSSLASAER 97
V R G R V+ C+ + DVIE+ +EN V E E TCVMKFGGSS+ASA+R
Sbjct: 41 VCARRVWGNRVAFSVTTCKASTSDVIEKNATENGMVSSEGETSFTCVMKFGGSSVASADR 100
Query: 98 MREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157
M+EVA LILSFP ERP++VLSAMGKTTNKLLLAGEKAVSCGV N+S I+EL F+KDLH R
Sbjct: 101 MKEVATLILSFPEERPIVVLSAMGKTTNKLLLAGEKAVSCGVINVSSIEELCFIKDLHLR 160
Query: 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIG 217
TVD+LG+D S+I+ HLEELEQLLKGIAM+KELT R++DYLVSFGECMSTRIFAAYLNKIG
Sbjct: 161 TVDQLGVDGSVISKHLEELEQLLKGIAMMKELTKRTQDYLVSFGECMSTRIFAAYLNKIG 220
Query: 218 VKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC 277
VKARQYDAF+IGFITTDDFTNADILEATYPAVAKRLHGDW++D AI IVTGFLGKA ++C
Sbjct: 221 VKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLHGDWLSDPAIAIVTGFLGKARKSC 280
Query: 278 AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL 337
A+TTLGRGGSDLTATTIGKALGL EIQVWKDVDGVLTCDPNI+P A+PVPYLTFDEAAEL
Sbjct: 281 AVTTLGRGGSDLTATTIGKALGLPEIQVWKDVDGVLTCDPNIYPKAEPVPYLTFDEAAEL 340
Query: 338 AYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397
AYFGAQVLHPQSMRPARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVTM
Sbjct: 341 AYFGAQVLHPQSMRPARESDIPVRVKNSYNPKAPGTLITKARDMSKAVLTSIVLKRNVTM 400
Query: 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ--EL 455
LDI STRMLGQYGFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQ EL
Sbjct: 401 LDIASTRMLGQYGFLAKVFSIFEELGISVDVVATSEVSVSLTLDPSKLWSRELIQQASEL 460
Query: 456 DHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVN 515
DHVVEELEKIA+VNLLQ+RSIISLIGNVQRSSLILE+ RVLR GV VQMISQGASKVN
Sbjct: 461 DHVVEELEKIAVVNLLQNRSIISLIGNVQRSSLILERLSRVLRTLGVTVQMISQGASKVN 520
Query: 516 ISLIVNDDEAEQCVRALHETFFESDLANLD 545
ISL+VND EAEQCVRALH FFES+L+ L+
Sbjct: 521 ISLVVNDSEAEQCVRALHSAFFESELSELE 550
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473780|ref|XP_002267220.2| PREDICTED: aspartokinase 1, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 433/568 (76%), Positives = 476/568 (83%), Gaps = 13/568 (2%)
Query: 1 MANTMQFSSI-----IQK---NSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGL 52
MA ++ FS + I+K + + S R F+ SSS L + + C R L
Sbjct: 1 MAGSVHFSGVRTPLLIKKACFSRFPSLSKSSNRIEFSASAISSSGLFAAFGDGCRRRV-L 59
Query: 53 RVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNER 112
RV C+ V+ + SEN D++ ++L CVMKFGGSSLASAERMREVA+L+L F +ER
Sbjct: 60 RVGCKKGVEAVLREEASENESSDDNVEKLACVMKFGGSSLASAERMREVADLVLQFRDER 119
Query: 113 PVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATH 172
PVIVLSAMGKTTN LLLAGEKAVSCGV+N S IDELS VK+LH RTV ELG+D S+I+ H
Sbjct: 120 PVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIDELSLVKELHLRTVQELGLDSSVISGH 179
Query: 173 LEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232
LEELEQLLKGIAM+KELT R+ DYLVSFGECMSTRIFAAYLNKIG KARQYDAFDIGFIT
Sbjct: 180 LEELEQLLKGIAMMKELTFRTTDYLVSFGECMSTRIFAAYLNKIGAKARQYDAFDIGFIT 239
Query: 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTAT 292
TDDFTNADILEATYPAVAKRL+ DWI D AIPIVTGFLGK W++ A+TTLGRGGSDLTAT
Sbjct: 240 TDDFTNADILEATYPAVAKRLYNDWINDPAIPIVTGFLGKGWKSGAVTTLGRGGSDLTAT 299
Query: 293 TIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
IG+ALGLQEIQVWKDVDGVLTCDP+I+P A PVPYLTFDEAAELAYFGAQVLHPQ+MRP
Sbjct: 300 AIGRALGLQEIQVWKDVDGVLTCDPSIYPRALPVPYLTFDEAAELAYFGAQVLHPQAMRP 359
Query: 353 AREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFL 412
ARE DIPVRVKNSYNP APGTLI ++RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQ+GFL
Sbjct: 360 ARESDIPVRVKNSYNPEAPGTLINKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQFGFL 419
Query: 413 AKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ--ELDHVVEELEKIAIVNL 470
AKVFS FEDLGISVDVVATSEVS+SLTLDPSKLWSRELIQQ ELDHVVEELEKIA+VNL
Sbjct: 420 AKVFSIFEDLGISVDVVATSEVSISLTLDPSKLWSRELIQQASELDHVVEELEKIAVVNL 479
Query: 471 LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVR 530
LQHRSIISLIGN+QRSSLILEKAF VLR GVNVQMISQGASKVNISLIVND EAEQCV+
Sbjct: 480 LQHRSIISLIGNIQRSSLILEKAFNVLRTIGVNVQMISQGASKVNISLIVNDSEAEQCVK 539
Query: 531 ALHETFFE-SDLANLDCVCGS-ENNSSL 556
ALH FFE DL L + G EN S+L
Sbjct: 540 ALHHAFFEIGDLFELMILDGGVENGSAL 567
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15232838|ref|NP_186851.1| aspartokinase 3 [Arabidopsis thaliana] gi|75336806|sp|Q9S702.1|AK3_ARATH RecName: Full=Aspartokinase 3, chloroplastic; AltName: Full=Aspartate kinase 3; Flags: Precursor gi|6091740|gb|AAF03452.1|AC010797_28 putative aspartate kinase [Arabidopsis thaliana] gi|6513929|gb|AAF14833.1|AC011664_15 putative aspartate kinase [Arabidopsis thaliana] gi|21593967|gb|AAM65905.1| putative aspartate kinase [Arabidopsis thaliana] gi|110740519|dbj|BAE98365.1| putative aspartate kinase [Arabidopsis thaliana] gi|332640229|gb|AEE73750.1| aspartokinase 3 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/544 (75%), Positives = 470/544 (86%), Gaps = 6/544 (1%)
Query: 1 MANTMQFSSI----IQKNSLHCQALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSC 56
MA +MQF + + NS + S + F+ VSS+ +V SC LRV+C
Sbjct: 1 MAASMQFYGVKTPELALNSKRIE-FSSKGLNFSALVSSARVFSRNVDRSCKNIA-LRVTC 58
Query: 57 EGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIV 116
E R++++ERK SE ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E+PV+V
Sbjct: 59 EAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDEKPVVV 118
Query: 117 LSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEEL 176
LSAM KTTNKLL+AGEKAV CGVTN+ I+ELS++K+LH RT ELG++ ++IA HLE L
Sbjct: 119 LSAMAKTTNKLLMAGEKAVCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAEHLEGL 178
Query: 177 EQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236
EQLLKG+AM+KELT RSRDYLVSFGECMSTR+FAAYLNKIG KARQYDAF+IG ITTDDF
Sbjct: 179 EQLLKGVAMMKELTLRSRDYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGIITTDDF 238
Query: 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGK 296
TNADILEATYPAV+K+L GDW + A+P+VTGFLGK WR+CA+TTLGRGGSDLTATTIGK
Sbjct: 239 TNADILEATYPAVSKKLLGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTATTIGK 298
Query: 297 ALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREG 356
ALGL+EIQVWKDVDGVLTCDPNI+ A+PVP+LTFDEAAELAYFGAQVLHP SMRPAREG
Sbjct: 299 ALGLREIQVWKDVDGVLTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMRPAREG 358
Query: 357 DIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416
+IPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGFLAKVF
Sbjct: 359 NIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGFLAKVF 418
Query: 417 STFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI 476
STFE LGISVDVVATSEVS+SLTLDPSK SRELIQ ELD VVEELEKIA+VNLL+HRSI
Sbjct: 419 STFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQHELDQVVEELEKIAVVNLLRHRSI 478
Query: 477 ISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
ISLIGNVQRSS ILEK FRVLR +G+NVQMISQGASKVNISLIVNDDEAE CV+ALH F
Sbjct: 479 ISLIGNVQRSSFILEKGFRVLRTNGINVQMISQGASKVNISLIVNDDEAEHCVKALHSAF 538
Query: 537 FESD 540
FE+D
Sbjct: 539 FETD 542
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449452022|ref|XP_004143759.1| PREDICTED: aspartokinase 2, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 837 bits (2163), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/473 (87%), Positives = 437/473 (92%), Gaps = 3/473 (0%)
Query: 85 MKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISC 144
MKFGGSS+ASAERM EVAELI SFP ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN S
Sbjct: 1 MKFGGSSVASAERMMEVAELIRSFPEERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNASD 60
Query: 145 IDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECM 204
IDE+ F+K+LH +T DELG+DRSIIA HL+ELEQLLKGIAM+KELT R+RDYLVSFGECM
Sbjct: 61 IDEMKFIKELHLKTADELGVDRSIIANHLDELEQLLKGIAMMKELTLRTRDYLVSFGECM 120
Query: 205 STRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIP 264
STRIFAAYL +IGVKARQYDAF+IGFITTDDFTNADILEATYPAVAKRL GDW +D AIP
Sbjct: 121 STRIFAAYLIRIGVKARQYDAFEIGFITTDDFTNADILEATYPAVAKRLLGDWNSDPAIP 180
Query: 265 IVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAK 324
IVTGFLGK WR+CA+TTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDPNIH A+
Sbjct: 181 IVTGFLGKGWRSCAVTTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPNIHSGAE 240
Query: 325 PVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA 384
PVP+LTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP APGTLI R+RDMSKA
Sbjct: 241 PVPFLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPQAPGTLITRNRDMSKA 300
Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
VLTSIVLKRNVTMLDIVSTRMLGQYGFLA+VF+ FEDLGISVDVVATSEVSLSLTLDPSK
Sbjct: 301 VLTSIVLKRNVTMLDIVSTRMLGQYGFLARVFAIFEDLGISVDVVATSEVSLSLTLDPSK 360
Query: 445 LWSRELIQQ--ELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGV 502
LWSRELIQQ ELDHVVEELEKIA+V LLQHRSIISLIGNVQRSSLILEKAF VLR +GV
Sbjct: 361 LWSRELIQQASELDHVVEELEKIAVVKLLQHRSIISLIGNVQRSSLILEKAFHVLRTNGV 420
Query: 503 NVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANLDCV-CGSENNS 554
NVQMISQGASKVNISLIVND+EAEQCVRALH FFE D L+ C S+N S
Sbjct: 421 NVQMISQGASKVNISLIVNDNEAEQCVRALHSAFFEIDGMKLNTEGCTSQNGS 473
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 557 | ||||||
| TAIR|locus:2078638 | 559 | AK3 "aspartate kinase 3" [Arab | 0.892 | 0.889 | 0.800 | 3e-211 | |
| TAIR|locus:2174708 | 544 | CARAB-AK-LYS [Arabidopsis thal | 0.879 | 0.900 | 0.806 | 5.7e-210 | |
| TAIR|locus:2183896 | 569 | AK-LYS1 "aspartate kinase 1" [ | 0.881 | 0.862 | 0.800 | 3.8e-204 | |
| TIGR_CMR|SO_3986 | 451 | SO_3986 "aspartokinase III, ly | 0.782 | 0.966 | 0.346 | 2.2e-57 | |
| UNIPROTKB|P08660 | 449 | lysC "LysC" [Escherichia coli | 0.779 | 0.966 | 0.354 | 5.9e-57 | |
| UNIPROTKB|Q9KUW8 | 479 | VC_0391 "Aspartokinase" [Vibri | 0.786 | 0.914 | 0.331 | 7e-54 | |
| TIGR_CMR|VC_0391 | 479 | VC_0391 "aspartokinase III, ly | 0.786 | 0.914 | 0.331 | 7e-54 | |
| TIGR_CMR|CPS_2004 | 456 | CPS_2004 "aspartokinase III, l | 0.800 | 0.978 | 0.321 | 8.9e-54 | |
| UNIPROTKB|P00561 | 820 | thrA "ThrA" [Escherichia coli | 0.800 | 0.543 | 0.326 | 6.9e-52 | |
| POMBASE|SPBC19F5.04 | 519 | SPBC19F5.04 "aspartate kinase | 0.531 | 0.570 | 0.330 | 3.7e-51 |
| TAIR|locus:2078638 AK3 "aspartate kinase 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2042 (723.9 bits), Expect = 3.0e-211, P = 3.0e-211
Identities = 398/497 (80%), Positives = 448/497 (90%)
Query: 52 LRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNE 111
LRV+CE R++++ERK SE ++++EK+LTCVMKFGGSS+ASAERM +VA+LILSFP+E
Sbjct: 54 LRVTCEAGRVELLERKASETFKLNKTEKKLTCVMKFGGSSVASAERMIQVAKLILSFPDE 113
Query: 112 RPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIAT 171
+PV+VLSAM KTTNKLL+AGEKAV CGVTN+ I+ELS++K+LH RT ELG++ ++IA
Sbjct: 114 KPVVVLSAMAKTTNKLLMAGEKAVCCGVTNVDTIEELSYIKELHIRTAHELGVETAVIAE 173
Query: 172 HLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231
HLE LEQLLKG+AM+KELT RSRDYLVSFGECMSTR+FAAYLNKIG KARQYDAF+IG I
Sbjct: 174 HLEGLEQLLKGVAMMKELTLRSRDYLVSFGECMSTRLFAAYLNKIGHKARQYDAFEIGII 233
Query: 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
TTDDFTNADILEATYPAV+K+L GDW + A+P+VTGFLGK WR+CA+TTLGRGGSDLTA
Sbjct: 234 TTDDFTNADILEATYPAVSKKLLGDWSKENALPVVTGFLGKGWRSCAVTTLGRGGSDLTA 293
Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
TTIGKALGL+EIQVWKDVDGVLTCDPNI+ A+PVP+LTFDEAAELAYFGAQVLHP SMR
Sbjct: 294 TTIGKALGLREIQVWKDVDGVLTCDPNIYCGAQPVPHLTFDEAAELAYFGAQVLHPLSMR 353
Query: 352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
PAREG+IPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYGF
Sbjct: 354 PAREGNIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDITSTRMLGQYGF 413
Query: 412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLL 471
LAKVFSTFE LGISVDVVATSEVS+SLTLDPSK SRELIQ ELD VVEELEKIA+VNLL
Sbjct: 414 LAKVFSTFEKLGISVDVVATSEVSISLTLDPSKFCSRELIQHELDQVVEELEKIAVVNLL 473
Query: 472 QHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 531
+HRSIISLIGNVQRSS ILEK FRVLR +G+NVQMISQGASKVNISLIVNDDEAE CV+A
Sbjct: 474 RHRSIISLIGNVQRSSFILEKGFRVLRTNGINVQMISQGASKVNISLIVNDDEAEHCVKA 533
Query: 532 LHETFFESDLANLDCVC 548
LH FFE+D C
Sbjct: 534 LHSAFFETDTCEAVSEC 550
|
|
| TAIR|locus:2174708 CARAB-AK-LYS [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2030 (719.7 bits), Expect = 5.7e-210, P = 5.7e-210
Identities = 397/492 (80%), Positives = 445/492 (90%)
Query: 51 GLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPN 110
GLRVSCE R+D+++RK+ E + K+LTCVMKFGGSS+ SAERM+EVA LILSFP+
Sbjct: 52 GLRVSCEALRVDLLQRKEPETCDSSGTGKELTCVMKFGGSSVESAERMKEVANLILSFPD 111
Query: 111 ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIA 170
ERPVIVLSAMGKTTNKLL AGEKAV+CGVTN+ I+ELSF+K+LH RT ELG++ ++I
Sbjct: 112 ERPVIVLSAMGKTTNKLLKAGEKAVTCGVTNVESIEELSFIKELHLRTAHELGVETTVIE 171
Query: 171 THLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230
HLE L QLLKGI+M+KELT R+RDYLVSFGECMSTR+F+AYLNKIG KARQYDAF+IGF
Sbjct: 172 KHLEGLHQLLKGISMMKELTLRTRDYLVSFGECMSTRLFSAYLNKIGHKARQYDAFEIGF 231
Query: 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLT 290
ITTDDFTNADILEATYPAV+K L GDW + A+P+VTG+LGK WR+CAITTLGRGGSDLT
Sbjct: 232 ITTDDFTNADILEATYPAVSKTLVGDWSKENAVPVVTGYLGKGWRSCAITTLGRGGSDLT 291
Query: 291 ATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSM 350
ATTIGKALGL+EIQVWKDVDGVLTCDPNI+P A+ VPYLTFDEAAELAYFGAQVLHP SM
Sbjct: 292 ATTIGKALGLREIQVWKDVDGVLTCDPNIYPGAQSVPYLTFDEAAELAYFGAQVLHPLSM 351
Query: 351 RPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYG 410
RPAR+GDIPVRVKNSYNP APGT+I RSRDMSKAVLTSIVLKRNVTMLDI STRMLGQYG
Sbjct: 352 RPARDGDIPVRVKNSYNPTAPGTVITRSRDMSKAVLTSIVLKRNVTMLDIASTRMLGQYG 411
Query: 411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQ--ELDHVVEELEKIAIV 468
FLAKVF+TFEDLGISVDVVATSEVS+SLTLDP+KLW RELIQ+ ELD++VEELEKIA+V
Sbjct: 412 FLAKVFTTFEDLGISVDVVATSEVSISLTLDPAKLWGRELIQRVNELDNLVEELEKIAVV 471
Query: 469 NLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQC 528
LLQ RSIISLIGNVQ+SSLILEK F+V R +GVNVQMISQGASKVNISLIVND+EAEQC
Sbjct: 472 KLLQRRSIISLIGNVQKSSLILEKVFQVFRSNGVNVQMISQGASKVNISLIVNDEEAEQC 531
Query: 529 VRALHETFFESD 540
VRALH FFE+D
Sbjct: 532 VRALHSAFFETD 543
|
|
| TAIR|locus:2183896 AK-LYS1 "aspartate kinase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1975 (700.3 bits), Expect = 3.8e-204, P = 3.8e-204
Identities = 397/496 (80%), Positives = 443/496 (89%)
Query: 53 RVSCEGARI---DVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFP 109
+VS G+R V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP
Sbjct: 56 KVSGSGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFP 114
Query: 110 NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSII 169
E PVIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I
Sbjct: 115 EESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVI 174
Query: 170 ATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229
T+LEELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IG
Sbjct: 175 LTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIG 234
Query: 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDL 289
FITTDDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDL
Sbjct: 235 FITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDL 294
Query: 290 TATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
TATTIGKALGL+EIQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQVLHPQS
Sbjct: 295 TATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 354
Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
MRPAREG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ
Sbjct: 355 MRPAREGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQV 414
Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVN 469
GFLAKVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQELDHVVEELEKIA+VN
Sbjct: 415 GFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVN 474
Query: 470 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCV 529
LL+ R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE CV
Sbjct: 475 LLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCV 534
Query: 530 RALHETFFES-DLANL 544
+ALH++FFES DL+ L
Sbjct: 535 QALHKSFFESGDLSEL 550
|
|
| TIGR_CMR|SO_3986 SO_3986 "aspartokinase III, lysine-sensitive" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
Identities = 161/464 (34%), Positives = 260/464 (56%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A M AE++L P+ R ++V+SA TN L+ +++++ +
Sbjct: 5 VAKFGGTSVADYGAMNRCAEIVLGNPDCR-LVVVSASSGVTNLLVELTQESIN----DDG 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE--LTPRSR---DYLV 198
+ L + + + +D+LG + A L++LL +A+L E ++ RS+ D L+
Sbjct: 60 RLQRLKQIAQIQYAILDKLGRPNDVAAA----LDKLLSRMAVLSEALVSARSKATMDELL 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
S GE S+ +FAA L + G + +D + + TD F A+ + A+ R H
Sbjct: 116 SLGEQCSSALFAAVLREKGANSSAFDVRRV--LRTDSHFGRAEP-QVEQIALLSREHLLP 172
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
+ + + GF+G A TTLGRGGSD +A + +AL +++W DV G+ T DP
Sbjct: 173 LLSEQVIVTQGFIG-ADEAGQTTTLGRGGSDYSAALLAEALTASAVEIWTDVAGIYTTDP 231
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
+ P+A P+ ++F+EAAE+A FGA+VLHP ++ PA I V V +S P GT IR
Sbjct: 232 RLAPNAHPIAEISFNEAAEMATFGAKVLHPATILPAVRQQIQVFVGSSKEPEKGGTWIRH 291
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
+ V ++ L+R+ T+L++ S +ML GFLA+ F+T ISVD++ TSEV++S
Sbjct: 292 QVE-DAPVFRAVALRRDQTLLNLHSLQMLHAQGFLAETFATLARHKISVDLITTSEVNVS 350
Query: 438 LTLDP--SKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAF 494
LTLD S + L+ + L ++EL + V + +++++IGN + ++ I + F
Sbjct: 351 LTLDKTGSDSSGQGLLSEAL---LQELSQHCRVRVEDGLALVAIIGNRIATTAGICRRVF 407
Query: 495 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
VL NV+MI QGAS N+ ++V + EA Q V+ALHE FE
Sbjct: 408 EVLEPH--NVRMICQGASPHNLCVLVAESEAAQVVKALHENLFE 449
|
|
| UNIPROTKB|P08660 lysC "LysC" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
Identities = 165/465 (35%), Positives = 251/465 (53%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ E G+
Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLVALAE-----GLEPGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
++L ++++ ++ L I EE+E+LL+ I +L E +P D LV
Sbjct: 60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
S GE MST +F L + V+A+ +D + T D F A E A+A+ +
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRA---EPDIAALAELAALQLL 171
Query: 259 TDL--AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
L + I GF+G + TTLGRGGSD TA + +AL + +W DV G+ T D
Sbjct: 172 PRLNEGLVITQGFIGSENKG-RTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 230
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P + AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A GTL+
Sbjct: 231 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVC 290
Query: 377 RSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
+ + + ++ L+RN T+L + S ML GFLA+VF ISVD++ TSEVS+
Sbjct: 291 NKTE-NPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSV 349
Query: 437 SLTLDPSKLWSR--ELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKA 493
+LTLD + S L+ Q L + EL + V + + ++++LIGN + ++ + ++
Sbjct: 350 ALTLDTTGSTSTGDTLLTQSL---LMELSALCRVEVEEGLALVALIGNDLSKACGVGKEV 406
Query: 494 FRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
F VL N++MI GAS N+ +V ++AEQ V+ LH FE
Sbjct: 407 FGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
|
|
| UNIPROTKB|Q9KUW8 VC_0391 "Aspartokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 154/465 (33%), Positives = 253/465 (54%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A+ E M + +I + P R ++V SA TN LL+ V+ +
Sbjct: 34 VAKFGGTSVANFEAMSRCSAIIENNPQTR-LVVSSACSGVTN-LLVELANGVASTERRQA 91
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
+ +L+ D+H+ +D+L D + + +E++ +L +A E + + D+LV
Sbjct: 92 ILQQLA---DIHYVIIDQLA-DPTRVE---KEVKAVLDSVASAAEAASFQSSKKLTDHLV 144
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
+ GE +ST I + + GV A ++D ++ + TDD + A+ +AK
Sbjct: 145 ACGELISTYILTQLMRERGVDAVRFDIREV--LRTDDHYGRAEPQLKEIAQLAKEKLVP- 201
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
+ + + + GF+G + TTLGRGGSD +A I +A+ +++W DV G+ + DP
Sbjct: 202 LCEQYVVVTQGFIGSDAQGNT-TTLGRGGSDYSAALIAEAVQASGLEIWTDVPGIYSTDP 260
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I P A P+P ++F EA+E+A FGA++LHP ++ PA IPV V +S P GT IR+
Sbjct: 261 RIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFVGSSKEPEKGGTWIRK 320
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
+ S + ++ L+ N TM+ + S +M YGFLAKVF ISVD++ TSE+S+S
Sbjct: 321 QVE-SAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILAKHKISVDLITTSEISVS 379
Query: 438 LTLDPSKLWSRELIQQELDHVVE-ELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFR 495
LTLD + EL V ELE++ V + + +I+LIGN + S ++ F
Sbjct: 380 LTLDKTDTSGGA---PELPEAVRAELEELCTVEVEYNLCLIALIGNKMKESRGYAKQVFS 436
Query: 496 VLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
VL N++MI GAS N+ ++++ ++Q V+ LH+ FE +
Sbjct: 437 VLE--DYNLRMICYGASAHNLCFLLHESVSKQAVQKLHKELFEQE 479
|
|
| TIGR_CMR|VC_0391 VC_0391 "aspartokinase III, lysine-sensitive" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 154/465 (33%), Positives = 253/465 (54%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A+ E M + +I + P R ++V SA TN LL+ V+ +
Sbjct: 34 VAKFGGTSVANFEAMSRCSAIIENNPQTR-LVVSSACSGVTN-LLVELANGVASTERRQA 91
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKEL-----TPRSRDYLV 198
+ +L+ D+H+ +D+L D + + +E++ +L +A E + + D+LV
Sbjct: 92 ILQQLA---DIHYVIIDQLA-DPTRVE---KEVKAVLDSVASAAEAASFQSSKKLTDHLV 144
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-FTNADILEATYPAVAKRLHGDW 257
+ GE +ST I + + GV A ++D ++ + TDD + A+ +AK
Sbjct: 145 ACGELISTYILTQLMRERGVDAVRFDIREV--LRTDDHYGRAEPQLKEIAQLAKEKLVP- 201
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
+ + + + GF+G + TTLGRGGSD +A I +A+ +++W DV G+ + DP
Sbjct: 202 LCEQYVVVTQGFIGSDAQGNT-TTLGRGGSDYSAALIAEAVQASGLEIWTDVPGIYSTDP 260
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I P A P+P ++F EA+E+A FGA++LHP ++ PA IPV V +S P GT IR+
Sbjct: 261 RIAPKAAPIPEISFSEASEMANFGAKILHPSTLLPAVRHGIPVFVGSSKEPEKGGTWIRK 320
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
+ S + ++ L+ N TM+ + S +M YGFLAKVF ISVD++ TSE+S+S
Sbjct: 321 QVE-SAPLYRALALRCNQTMVTLRSAQMFHAYGFLAKVFEILAKHKISVDLITTSEISVS 379
Query: 438 LTLDPSKLWSRELIQQELDHVVE-ELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFR 495
LTLD + EL V ELE++ V + + +I+LIGN + S ++ F
Sbjct: 380 LTLDKTDTSGGA---PELPEAVRAELEELCTVEVEYNLCLIALIGNKMKESRGYAKQVFS 436
Query: 496 VLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
VL N++MI GAS N+ ++++ ++Q V+ LH+ FE +
Sbjct: 437 VLE--DYNLRMICYGASAHNLCFLLHESVSKQAVQKLHKELFEQE 479
|
|
| TIGR_CMR|CPS_2004 CPS_2004 "aspartokinase III, lysine-sensitive" [Colwellia psychrerythraea 34H (taxid:167879)] | Back alignment and assigned GO terms |
|---|
Score = 556 (200.8 bits), Expect = 8.9e-54, P = 8.9e-54
Identities = 150/467 (32%), Positives = 251/467 (53%)
Query: 76 ESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAV 135
+S LT V KFGG+S+A + M A +I + N ++V+SA TN L+ +K V
Sbjct: 5 QSTSSLT-VAKFGGTSVADYQAMLRCANIIKN-DNSNRLVVVSASSGVTNLLVRLSQKNV 62
Query: 136 SCGVTNISCIDELSFVKD--LHHRTVD-ELGIDRSIIATHLEELEQLLKGIAMLKELTPR 192
S + ++ + ++ H + D E +++ I + L+EL Q + L + + +
Sbjct: 63 SV-IEQKDIVENIRAIQVNITQHLSSDVEAQLNQEINSL-LDELTQ--HALTQLLQYSTK 118
Query: 193 SRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAV-AK 251
+ D +++FGE S+RIFA L + + ++ + + T+ +++ + +
Sbjct: 119 TADAILAFGEQFSSRIFAQVLQSVDIPGEYFNVQQV--MKTNSLYGKAVVDLNQLSEQST 176
Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
+L + D I + GF+G+ + TTLGRGGSD +A + +AL + +W DV G
Sbjct: 177 QLLAPKLIDKVI-VTQGFIGQDSQGHT-TTLGRGGSDYSAALLAEALNGTNLSIWTDVVG 234
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
+ T DP I A+ + ++F EAAE+A FGA++LHP ++ PA +IPV V +S P
Sbjct: 235 IFTTDPRITDQARAIKEISFGEAAEMATFGAKILHPATLIPAMRRNIPVFVGSSKEPEKG 294
Query: 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431
GT I++ D S SI L+R T++ + S ML GFLAKVF +S+D++ T
Sbjct: 295 GTQIKQKVD-SNPTYRSIALRREQTLVTVKSPAMLHASGFLAKVFGVLAKHELSIDLITT 353
Query: 432 SEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLIL 490
SE+S++LT D ++ LI VV ELE++ V++ S++++IGN + + I
Sbjct: 354 SEISVALTFDNPSGSTQSLITNA---VVAELEQLCEVSVEHGLSLVAVIGNGLTCAKGIG 410
Query: 491 EKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537
+ F + + VN+++I GAS N+ +VN+DEA V LH T F
Sbjct: 411 QSIFETI--NDVNIRLICHGASANNLCFLVNEDEANYVVEKLHNTLF 455
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| UNIPROTKB|P00561 thrA "ThrA" [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
Score = 542 (195.9 bits), Expect = 6.9e-52, P = 6.9e-52
Identities = 154/472 (32%), Positives = 245/472 (51%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVI-VLSAMGKTTNKLLLAGEKAVSC--GVT 140
V+KFGG+S+A+AER VA+++ S + V VLSA K TN L+ EK +S +
Sbjct: 3 VLKFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALP 62
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEE----LEQLLKGIAMLKELTPRSRDY 196
NIS + + F + L + G + + T +++ ++ +L GI++L +
Sbjct: 63 NISDAERI-FAELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLHGISLLGQCPDSINAA 121
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--TNADILEATYPAVAKRLH 254
L+ GE MS I A L G D + + + + DI E+T A R+
Sbjct: 122 LICRGEKMSIAIMAGVLEARGHNVTVIDPVE-KLLAVGHYLESTVDIAESTRRIAASRIP 180
Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
D + ++ GF + + LGR GSD +A + L ++W DVDGV T
Sbjct: 181 ADHMV-----LMAGFTAGNEKG-ELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYT 234
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
CDP P A+ + +++ EA EL+YFGA+VLHP+++ P + IP +KN+ NP APGTL
Sbjct: 235 CDPRQVPDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTL 294
Query: 375 IRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATS 432
I SRD + + I N+ M + M G G A+VF+ ISV ++ ++S
Sbjct: 295 IGASRDEDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSS 354
Query: 433 EVSLSLTLDPSKLWSRELIQQELDHV-VEE--LEKIAIVNLLQHRSIISLIGNVQRSSL- 488
E S+S + S E QE ++ ++E LE +A+ L +IIS++G+ R+
Sbjct: 355 EYSISFCVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERL---AIISVVGDGMRTLRG 411
Query: 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
I K F L R+ +N+ I+QG+S+ +IS++VN+D+A VR H+ F +D
Sbjct: 412 ISAKFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTD 463
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| POMBASE|SPBC19F5.04 SPBC19F5.04 "aspartate kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 3.7e-51, Sum P(2) = 3.7e-51
Identities = 107/324 (33%), Positives = 171/324 (52%)
Query: 69 SENLGVDESEKQLTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGK---- 122
++N+ D S+ + V KFGG+S+ + +VA+ LS +R +V SA
Sbjct: 4 AKNIENDPSKGWV--VQKFGGTSVGKFPIKIAVDVAKEYLS--TKRVALVCSARSTDTKA 59
Query: 123 --TTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT----VDELGI-DRSIIATHLE- 174
TT +L+ A E A+ V ++ D + ++ H + + ++GI D I A H +
Sbjct: 60 EGTTTRLIRATEAALRPAVGSVH--DLVRIIETDHVQAARDFIQDVGIQDELIDAFHADC 117
Query: 175 -ELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233
ELEQ L I +L E++PR+RD ++ GE +S R AA L G+ + D I
Sbjct: 118 VELEQYLNAIRVLSEVSPRTRDLVIGMGERLSCRFMAAVLKDQGIDSEFIDMSHI-IDEQ 176
Query: 234 DDFTNADILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTA 291
++ N D + Y +A +L +T + +P+VTGF G ++ +GRG +D A
Sbjct: 177 REWRNLDA--SFYAYLASQLASK-VTAVGNKVPVVTGFFGMV-PGGLLSQIGRGYTDFCA 232
Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMR 351
+ L E+Q+WK+VDG+ T DP P A+ +P +T +EAAEL Y+G++V+HP +M
Sbjct: 233 ALLAVGLNADELQIWKEVDGIFTADPRKVPTARLLPLITPEEAAELTYYGSEVIHPFTMS 292
Query: 352 PAREGDIPVRVKNSYNPNAPGTLI 375
IP+R+KN NP GT+I
Sbjct: 293 QVVHARIPIRIKNVGNPRGKGTVI 316
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9S702 | AK3_ARATH | 2, ., 7, ., 2, ., 4 | 0.7573 | 0.9658 | 0.9624 | yes | no |
| Q9LYU8 | AK1_ARATH | 2, ., 7, ., 2, ., 4 | 0.8004 | 0.8815 | 0.8629 | no | no |
| O23653 | AK2_ARATH | 2, ., 7, ., 2, ., 4 | 0.7754 | 0.9335 | 0.9558 | no | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.2 | 0.983 |
| 4th Layer | 2.7.2.4 | 0.979 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | GSVIVG00037944001 | RecName- Full=Aspartokinase; EC=2.7.2.4; (569 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | GSVIVG00030599001 | SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (344 aa) | • | • | • | • | 0.970 | ||||
 | GSVIVG00017913001 | SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (430 aa) | • | • | • | • | 0.947 | ||||
 | GSVIVG00026365001 | SubName- Full=Chromosome chr15 scaffold_37, whole genome shotgun sequence; (363 aa) | • | • | • | 0.935 | |||||
 | GSVIVG00027272001 | SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (403 aa) | • | • | 0.875 | ||||||
 | GSVIVG00017396001 | RecName- Full=Homoserine dehydrogenase; EC=1.1.1.3; (377 aa) | • | • | • | • | • | 0.872 | |||
 | GSVIVG00025551001 | RecName- Full=Adenylosuccinate synthetase; EC=6.3.4.4;; Plays an important role in the de novo [...] (489 aa) | • | • | • | • | 0.869 | ||||
 | GSVIVG00024074001 | SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (589 aa) | • | • | • | 0.839 | |||||
 | GSVIVG00012864001 | SubName- Full=Chromosome undetermined scaffold_408, whole genome shotgun sequence; (369 aa) | • | • | • | 0.810 | |||||
 | GSVIVG00016723001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (411 aa) | • | 0.808 | |||||||
 | GSVIVG00032723001 | RecName- Full=Aspartate aminotransferase; EC=2.6.1.1; (410 aa) | • | 0.807 | |||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 557 | |||
| PLN02551 | 521 | PLN02551, PLN02551, aspartokinase | 0.0 | |
| cd04244 | 298 | cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino | 1e-159 | |
| COG0527 | 447 | COG0527, LysC, Aspartokinases [Amino acid transpor | 1e-138 | |
| PRK06291 | 465 | PRK06291, PRK06291, aspartate kinase; Provisional | 1e-132 | |
| PRK09084 | 448 | PRK09084, PRK09084, aspartate kinase III; Validate | 1e-129 | |
| TIGR00657 | 441 | TIGR00657, asp_kinases, aspartate kinase | 1e-113 | |
| PRK09436 | 819 | PRK09436, thrA, bifunctional aspartokinase I/homos | 1e-105 | |
| cd04243 | 293 | cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino | 1e-101 | |
| TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monof | 3e-96 | |
| cd04234 | 227 | cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfa | 4e-91 | |
| cd04257 | 294 | cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kina | 1e-84 | |
| PRK06635 | 404 | PRK06635, PRK06635, aspartate kinase; Reviewed | 3e-83 | |
| PRK09034 | 454 | PRK09034, PRK09034, aspartate kinase; Reviewed | 4e-83 | |
| cd04258 | 292 | cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Ami | 1e-78 | |
| PRK08961 | 861 | PRK08961, PRK08961, bifunctional aspartate kinase/ | 5e-77 | |
| cd04246 | 239 | cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino | 8e-67 | |
| PRK08210 | 403 | PRK08210, PRK08210, aspartate kinase I; Reviewed | 2e-61 | |
| cd04261 | 239 | cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino | 4e-61 | |
| cd04245 | 288 | cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Ami | 6e-61 | |
| cd02115 | 248 | cd02115, AAK, Amino Acid Kinases (AAK) superfamily | 3e-60 | |
| cd04260 | 244 | cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino A | 8e-54 | |
| cd04259 | 295 | cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Ki | 2e-48 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 1e-44 | |
| cd04933 | 78 | cd04933, ACT_AK1-AT_1, ACT domains located C-termi | 6e-43 | |
| PRK09466 | 810 | PRK09466, metL, bifunctional aspartate kinase II/h | 4e-41 | |
| PRK08373 | 341 | PRK08373, PRK08373, aspartate kinase; Validated | 6e-41 | |
| cd04247 | 306 | cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kina | 1e-40 | |
| PRK05925 | 440 | PRK05925, PRK05925, aspartate kinase; Provisional | 1e-40 | |
| PRK08841 | 392 | PRK08841, PRK08841, aspartate kinase; Validated | 3e-40 | |
| pfam00696 | 230 | pfam00696, AA_kinase, Amino acid kinase family | 2e-38 | |
| TIGR02078 | 327 | TIGR02078, AspKin_pair, Pyrococcus aspartate kinas | 5e-34 | |
| cd04918 | 65 | cd04918, ACT_AK1-AT_2, ACT domains located C-termi | 1e-32 | |
| cd04912 | 75 | cd04912, ACT_AKiii-LysC-EC-like_1, ACT domains loc | 4e-27 | |
| PRK09181 | 475 | PRK09181, PRK09181, aspartate kinase; Validated | 2e-25 | |
| cd04892 | 65 | cd04892, ACT_AK-like_2, ACT domains C-terminal to | 8e-19 | |
| cd04248 | 304 | cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Aci | 9e-17 | |
| cd04890 | 62 | cd04890, ACT_AK-like_1, ACT domains found C-termin | 1e-16 | |
| cd04932 | 75 | cd04932, ACT_AKiii-LysC-EC_1, ACT domains located | 5e-14 | |
| cd04868 | 60 | cd04868, ACT_AK-like, ACT domains C-terminal to th | 1e-12 | |
| cd04917 | 64 | cd04917, ACT_AKiii-LysC-EC_2, ACT domains located | 3e-12 | |
| cd04924 | 66 | cd04924, ACT_AK-Arch_2, ACT domains of a monofunct | 1e-10 | |
| cd04916 | 66 | cd04916, ACT_AKiii-YclM-BS_2, ACT domains located | 8e-10 | |
| cd04936 | 63 | cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t | 4e-09 | |
| cd04919 | 66 | cd04919, ACT_AK-Hom3_2, ACT domains located C-term | 5e-09 | |
| cd04922 | 66 | cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the b | 5e-09 | |
| cd04935 | 75 | cd04935, ACT_AKiii-DAPDC_1, ACT domains of a bifun | 7e-09 | |
| cd04923 | 63 | cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t | 8e-09 | |
| cd04921 | 80 | cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of | 1e-08 | |
| cd04868 | 60 | cd04868, ACT_AK-like, ACT domains C-terminal to th | 6e-08 | |
| cd04915 | 66 | cd04915, ACT_AK-Ectoine_2, ACT domains located C-t | 7e-07 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 5e-06 | |
| cd04254 | 231 | cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, t | 6e-06 | |
| cd04239 | 229 | cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase | 8e-06 | |
| TIGR00657 | 441 | TIGR00657, asp_kinases, aspartate kinase | 2e-05 | |
| COG0528 | 238 | COG0528, PyrH, Uridylate kinase [Nucleotide transp | 2e-05 | |
| cd04934 | 73 | cd04934, ACT_AK-Hom3_1, CT domains located C-termi | 3e-05 | |
| PRK00358 | 231 | PRK00358, pyrH, uridylate kinase; Provisional | 4e-05 | |
| PRK07431 | 587 | PRK07431, PRK07431, aspartate kinase; Provisional | 5e-05 | |
| TIGR02075 | 232 | TIGR02075, pyrH_bact, uridylate kinase | 6e-05 | |
| cd04920 | 63 | cd04920, ACT_AKiii-DAPDC_2, ACT domains of a bifun | 1e-04 | |
| cd04923 | 63 | cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of t | 3e-04 | |
| TIGR00656 | 401 | TIGR00656, asp_kin_monofn, aspartate kinase, monof | 6e-04 | |
| cd04936 | 63 | cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of t | 8e-04 |
| >gnl|CDD|178166 PLN02551, PLN02551, aspartokinase | Back alignment and domain information |
|---|
Score = 996 bits (2577), Expect = 0.0
Identities = 419/510 (82%), Positives = 451/510 (88%)
Query: 31 CVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGS 90
S LRV+C R++ + SE +EKQLT VMKFGGS
Sbjct: 2 VPVGGGSARRRSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGS 61
Query: 91 SLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150
S+ASAERMREVA+LILSFP+ERPV+VLSAMGKTTN LLLAGEKAVSCGVTN+S I+ELS
Sbjct: 62 SVASAERMREVADLILSFPDERPVVVLSAMGKTTNNLLLAGEKAVSCGVTNVSEIEELSA 121
Query: 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFA 210
+++LH RT DELG+D S++ L+ELEQLLKGIAM+KELTPR+RDYLVSFGE MSTRIFA
Sbjct: 122 IRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSFGERMSTRIFA 181
Query: 211 AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFL 270
AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI D A+P+VTGFL
Sbjct: 182 AYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFL 241
Query: 271 GKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330
GK W+T AITTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDP I+P+A PVPYLT
Sbjct: 242 GKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLT 301
Query: 331 FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390
FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP APGTLI ++RDMSKAVLTSIV
Sbjct: 302 FDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDMSKAVLTSIV 361
Query: 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSREL 450
LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVS+SLTLDPSKLWSREL
Sbjct: 362 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKLWSREL 421
Query: 451 IQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510
IQQELDH+VEELEKIA+VNLLQ RSIISLIGNVQRSSLILEK FRVLR +GVNVQMISQG
Sbjct: 422 IQQELDHLVEELEKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQG 481
Query: 511 ASKVNISLIVNDDEAEQCVRALHETFFESD 540
ASKVNISLIVNDDEAEQCVRALH FFE D
Sbjct: 482 ASKVNISLIVNDDEAEQCVRALHSAFFEGD 511
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Length = 521 |
| >gnl|CDD|239777 cd04244, AAK_AK-LysC-like, AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Score = 454 bits (1170), Expect = e-159
Identities = 163/300 (54%), Positives = 198/300 (66%), Gaps = 7/300 (2%)
Query: 82 TCVMKFGGSSLASAERMREVAELIL-SFPNERPVIVLSAMGKTTNKLLLAGEKAVS---C 137
VMKFGG+S+ SAER+R VA+L+ V+V+SAMG T++LLLA E AVS
Sbjct: 1 RLVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGRIA 60
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGI-DRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
GV + I L +K DE SII + LEELE+LL GIA L ELTPRSRDY
Sbjct: 61 GVKDFIEILRLRHIKAAKEAISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDY 120
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
+VSFGE +S IF+A L +G+KAR D + G IT D+F NA L ATY V KRL
Sbjct: 121 IVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPM 180
Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
D IP+VTGF+G AITTLGRGGSD +AT IG AL EI +WKDVDGV+T D
Sbjct: 181 L-EDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTAD 238
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P I P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IPVRVKN++NP APGTLI
Sbjct: 239 PRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298
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The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Length = 298 |
| >gnl|CDD|223601 COG0527, LysC, Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 407 bits (1048), Expect = e-138
Identities = 164/461 (35%), Positives = 254/461 (55%), Gaps = 21/461 (4%)
Query: 83 CVMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
V KFGG+S+A AER+ VA+++ E + V+V+SAMG T+ L+ E A S
Sbjct: 4 IVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD- 62
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+D+ + + I + + E +++L GIA+L E++PR RD L+S
Sbjct: 63 ----AVAEQRHRDIASELILDPFIAARLAEV-IAEFKKVLLGIALLGEVSPRERDELLSL 117
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADIL-EATYPAVAKRLHGDWIT 259
GE +S + AA LN +GV AR D G T + NA IL E + + + L
Sbjct: 118 GERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEG--- 174
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+P+V GF G TTLGRGGSD +A + ALG E+++W DVDGV T DP I
Sbjct: 175 --KVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRI 231
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR 379
P A+ +P ++++EA ELAY GA+VLHP+++ PA IP+R+KN++NP+APGTLI
Sbjct: 232 VPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAET 291
Query: 380 DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLT 439
+ + V+ I L NV ++ + M G GF A+VF + GI+VD++ S +S++
Sbjct: 292 ESDEPVVKGIALDDNVALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSIS 351
Query: 440 LDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFRVLR 498
+ + L EL V + +++S++G RS+ + + F+ L
Sbjct: 352 FTVPES-DAPRALRALLEEKLELLAEVEVE--EGLALVSIVGAGMRSNPGVAARIFQALA 408
Query: 499 RSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539
+N+ MIS +S+++IS +V++ +AE+ VRALHE FF
Sbjct: 409 EENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFLG 447
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Length = 447 |
| >gnl|CDD|235773 PRK06291, PRK06291, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 391 bits (1008), Expect = e-132
Identities = 178/468 (38%), Positives = 286/468 (61%), Gaps = 25/468 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
VMKFGG+S+ ER+R VA+L+ + +E V+V+SAM T+ LL E+A+ +
Sbjct: 4 VMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDVR--D 61
Query: 142 ISCIDEL-SFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTPRS 193
I+ + + + +++ H++ ++E D I + +EELE+ L G++ L ELTPRS
Sbjct: 62 IAKVKDFIADLRERHYKAIEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRS 121
Query: 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL 253
RDY++SFGE +S I + L +G+K+ + G IT +F NA L TY V +RL
Sbjct: 122 RDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERL 181
Query: 254 HGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
+ + IP+VTGF+G ITTLGRGGSD +A IG AL EI +W DVDGV+
Sbjct: 182 EPL-LKEGVIPVVTGFIG-ETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVM 239
Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
T DP I P A+ +P +++ EA EL+YFGA+VLHP+++ PA E IPVRVKN++NP PGT
Sbjct: 240 TTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGT 299
Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--T 431
LI + SK V+ ++ L +NV +++I M+G G A++FS + G++V +++ +
Sbjct: 300 LITSDSESSKRVVKAVTLIKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGS 359
Query: 432 SEVSLSLTLDPSKLWS--RELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL- 488
SE ++SL +D + L + L ++ + +V ++ V +++++G +
Sbjct: 360 SESNISLVVDEADLEKALKALRREFGEGLVRDVTFDKDVC------VVAVVGAGMAGTPG 413
Query: 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
+ + F L SG+N++MISQG+S+VNIS +V++++ E+ V+ LH+ F
Sbjct: 414 VAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEF 461
|
Length = 465 |
| >gnl|CDD|236376 PRK09084, PRK09084, aspartate kinase III; Validated | Back alignment and domain information |
|---|
Score = 385 bits (992), Expect = e-129
Identities = 167/469 (35%), Positives = 252/469 (53%), Gaps = 36/469 (7%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS PN ++VLSA TN L+ E A G ++
Sbjct: 3 VAKFGGTSVADFDAMNRSADIVLSNPN-TRLVVLSASAGVTNLLVALAEGAEP-GDERLA 60
Query: 144 CIDELSFVKDLHHRTVDELGIDRSI---IATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+DE ++ + + +D LG + I LE + L + ++ +P D LVS
Sbjct: 61 LLDE---IRQIQYAILDRLGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSH 115
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA-----DILEATYPAVAKRLHG 255
GE MST +F L + GV+A +D + T D F A + E + L
Sbjct: 116 GELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGRAEPDVAALAELAQEQLLPLL-- 172
Query: 256 DWITDLAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313
+ + GF+G + RT TTLGRGGSD +A + +AL +++W DV G+
Sbjct: 173 ----AEGVVVTQGFIGSDEKGRT---TTLGRGGSDYSAALLAEALNASRVEIWTDVPGIY 225
Query: 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGT 373
T DP I P AK + ++F+EAAE+A FGA+VLHP ++ PA +IPV V +S +P A GT
Sbjct: 226 TTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGT 285
Query: 374 LIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE 433
I + +I L+RN T+L + S ML GFLA+VF ISVD++ TSE
Sbjct: 286 WICNDTENPPLF-RAIALRRNQTLLTLHSLNMLHARGFLAEVFGILARHKISVDLITTSE 344
Query: 434 VSLSLTLD--PSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLIL 490
VS+SLTLD S L+ Q L + EL ++ V + + ++++LIGN + ++ +
Sbjct: 345 VSVSLTLDTTGSTSTGDTLLTQAL---LTELSQLCRVEVEEGLALVALIGNNLSKACGVA 401
Query: 491 EKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539
++ F VL N++MI GAS N+ +V + +AEQ V+ALH+ FE
Sbjct: 402 KRVFGVL--EPFNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFEG 448
|
Length = 448 |
| >gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase | Back alignment and domain information |
|---|
Score = 343 bits (882), Expect = e-113
Identities = 163/464 (35%), Positives = 255/464 (54%), Gaps = 35/464 (7%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ +AER+R VA+++L + V+V+SAM T+ L+ E+A
Sbjct: 4 VQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPS-- 61
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+ L +++ H ++R I EEL++LL +L E PR D ++SFG
Sbjct: 62 ---KEFLEKIREKH-----IEILERLIPQAIAEELKRLLDAELVL-EEKPREMDRILSFG 112
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA-DILEATYPAVAKRLHGDWITD 260
E +S + +A L ++GVKA + G +T +F A I+E + L
Sbjct: 113 ERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEG---- 168
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
IP+V GF G A TTLGRGGSD TA + AL E +++ DVDG+ T DP I
Sbjct: 169 -IIPVVAGFQG-ATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIV 226
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380
P A+ + ++++E ELA FGA+VLHP+++ PA IP+ VK+++NP APGTLI S
Sbjct: 227 PDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTK 286
Query: 381 -MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLS 437
M + ++ + L RN + + M G GFLA+VF + GI+VD++ +SE S+S
Sbjct: 287 EMEEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARVFGALAEAGINVDLITQSSSETSIS 345
Query: 438 LTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHR--SIISLIGNVQRSSL-ILEKAF 494
T+D +E Q + EL A+ ++ + + +SL+G +S+ + K F
Sbjct: 346 FTVD------KEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIF 399
Query: 495 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
L ++G+N++MIS S++NIS +V++ +AE+ VR LH FE
Sbjct: 400 EALAQNGINIEMISS--SEINISFVVDEKDAEKAVRLLHNALFE 441
|
Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441 |
| >gnl|CDD|181856 PRK09436, thrA, bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Score = 333 bits (856), Expect = e-105
Identities = 151/475 (31%), Positives = 246/475 (51%), Gaps = 32/475 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILS-FPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGG+S+A+AER VA++I S E+ +VLSA K TN L+ EKA
Sbjct: 3 VLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAA----KGD 58
Query: 143 SCIDELSFVKDLHHRTVDEL-----GIDRS----IIATHLEELEQLLKGIAMLKELTPRS 193
E+ + + H +D L G D + + +L+ +L GI++L E
Sbjct: 59 DAYPEILDAERIFHELLDGLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSV 118
Query: 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEAT--YPAVAK 251
++S GE +S I AA L G D + + D LE+T +
Sbjct: 119 NAAIISRGERLSIAIMAAVLEARGHDVTVIDPRE--LLLAD----GHYLESTVDIAESTR 172
Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
R+ +I + ++ GF + TLGR GSD +A + L ++W DVDG
Sbjct: 173 RIAASFIPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDG 231
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
V T DP + P A+ + L++ EA EL+YFGA+VLHP+++ P + IP +KN++NP AP
Sbjct: 232 VYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAP 291
Query: 372 GTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV-- 429
GTLI D + I N+ M ++ M G G ++VF+ GISV ++
Sbjct: 292 GTLIGAESDEDSLPVKGISNLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQ 351
Query: 430 ATSEVSLSLTLDPSKL-WSRELIQQELDHVVEE--LEKIAIVNLLQHRSIISLIGNVQRS 486
++SE S+S + S ++ +++E ++E LE + + L +IIS++G+ R+
Sbjct: 352 SSSEYSISFCVPQSDAAKAKRALEEEFALELKEGLLEPLEVEENL---AIISVVGDGMRT 408
Query: 487 SL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
I K F L R+ +N+ I+QG+S+ +IS+++++D+A + +RA H++FF SD
Sbjct: 409 HPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLSD 463
|
Length = 819 |
| >gnl|CDD|239776 cd04243, AAK_AK-HSDH-like, AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 307 bits (788), Expect = e-101
Identities = 115/299 (38%), Positives = 180/299 (60%), Gaps = 16/299 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V+KFGG+S+ASAER+R VA++I S + ++V+SA+G TN+L+ E A S
Sbjct: 3 VLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGDDAQAI 62
Query: 144 CIDELSFVKDLHHRTVDELGID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
+ E+ ++ H + EL + + + LE L+ LL+GI +L EL+ ++R +
Sbjct: 63 VLQEI---RERHLDLIKELLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEV 119
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
+SFGE +S+R+ +AYL + G+ A DA ++ +T D F NA + +RL
Sbjct: 120 LSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDGFLNAVVD---LKLSKERLA-QL 174
Query: 258 ITDLA-IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+ + + + GF+ TTLGRGGSD +A + L +E+++W DVDGV T D
Sbjct: 175 LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTAD 233
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P P A+ + L++DEA ELAYFGA+VLHP++++PA +IP+ +KN++NP APGTLI
Sbjct: 234 PRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLI 292
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Also included in this CD is the catalytic domain of the aspartokinase (AK) of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Also included in this CD is the catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 293 |
| >gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Score = 298 bits (765), Expect = 3e-96
Identities = 156/467 (33%), Positives = 231/467 (49%), Gaps = 80/467 (17%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ S ER++ A ++L E + V+V+SAM T+ L+ EKA+
Sbjct: 4 VQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIR----- 58
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+TPR RD LVS G
Sbjct: 59 ---------------------------------------------DAITPRERDELVSHG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S+ +F+ L +GVKA D + G IT D+F NA I A +RL + +
Sbjct: 74 ERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAKIDII---ATEERLL-PLLEEG 129
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
I +V GF G A TTLGRGGSD TA + AL + ++ DV GV T DP +
Sbjct: 130 IIVVVAGFQG-ATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVE 188
Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM 381
AK + ++++EA ELA FGA+VLHP+++ PA +P+ V++S++P GTLI S +
Sbjct: 189 AAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE-EGTLITNSMEN 247
Query: 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLT 439
V I L++NVT + + MLG+ GFLA++F + I+VD+++ SE S+SLT
Sbjct: 248 PPLV-KGIALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLT 306
Query: 440 LDPSKLWS------RELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRS-SLILEK 492
+D + + LD V E E +A V S++G + +
Sbjct: 307 VDETDADEAVRALKDQSGAAGLDRVEVE-EGLAKV---------SIVGAGMVGAPGVASE 356
Query: 493 AFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539
F L +N+ MI G+S+ NIS +V++ +AE+ VR LHE F ES
Sbjct: 357 IFSALEEKNINILMI--GSSETNISFLVDEKDAEKAVRKLHEVFEES 401
|
This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401 |
| >gnl|CDD|239767 cd04234, AAK_AK, AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Score = 278 bits (714), Expect = 4e-91
Identities = 115/296 (38%), Positives = 160/296 (54%), Gaps = 74/296 (25%)
Query: 83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ASAER++ VA++I ++ R V+V+SAMG GVT+
Sbjct: 2 VVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMG----------------GVTD 45
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
L +L L+SFG
Sbjct: 46 ---------------------------------LLIELA---------------LLLSFG 57
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL--HGDWIT 259
E +S R+ AA L G+KAR DA G T D+ A I+E +Y + + L G
Sbjct: 58 ERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEISYERLKELLAEIGK--- 114
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+P+VTGF+G+ ITTLGRGGSD +A + ALG E+++W DVDG+ T DP I
Sbjct: 115 ---VPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P A+ +P +++DEA ELAYFGA+VLHP+++ PAR+ +IP+RVKN++NP APGTLI
Sbjct: 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLI 226
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback-inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, one is a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD is the catalytic domain of the Methylomicrobium alcaliphilum ectoine AK, the first enzyme of the ectoine biosynthetic pathway, found in this bacterium, and several other halophilic/halotolerant bacteria. Length = 227 |
| >gnl|CDD|239790 cd04257, AAK_AK-HSDH, AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 1e-84
Identities = 114/300 (38%), Positives = 175/300 (58%), Gaps = 17/300 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGG+SLA+AER+R VA++IL+ E+ +V+SA GK T+ LL E A S +
Sbjct: 3 VLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASS---GDD 59
Query: 143 SCIDELSFVKDLHHRTVDEL------GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
+ D L ++ H + EL S + LEEL+ LL+GI +L EL R
Sbjct: 60 AYEDILQELESKHLDLITELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAK 119
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
++SFGE +S R+ +A LN+ G+ A DA ++ +T + NA + +R+
Sbjct: 120 VLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDGGYLNAVVDIE---LSKERIK-A 174
Query: 257 WITDLA-IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
W + + +VTGF+ TTLGR GSD +A + L ++++W DVDGV +
Sbjct: 175 WFSSNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSA 233
Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
DP A+ +P L++ EA EL+YFGA+VLHP++++P + +IP+ +KN++NP APGTLI
Sbjct: 234 DPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLI 293
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains, located C-terminal to the AK catalytic domain, were shown to be involved in allosteric activation. Length = 294 |
| >gnl|CDD|235843 PRK06635, PRK06635, aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 264 bits (678), Expect = 3e-83
Identities = 139/476 (29%), Positives = 227/476 (47%), Gaps = 102/476 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ ER++ VAE + + + V+V+SAMG TT
Sbjct: 5 VQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTT----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
DEL + + KE++P R D L
Sbjct: 48 ------------------DEL--------------------LDLAKEVSPLPDPRELDML 69
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL-HGD 256
+S GE +S + A L +GVKAR + + G IT A I + + + L GD
Sbjct: 70 LSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARITDIDPSRIREALDEGD 129
Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+ +V GF G ITTLGRGGSD TA + AL E +++ DVDGV T D
Sbjct: 130 ------VVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTD 182
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P I P A+ + ++++E ELA GA+VLHP+S+ A++ ++P+RV++S++ + PGTLI
Sbjct: 183 PRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFS-DNPGTLIT 241
Query: 377 RSRD--MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-- 432
+ M + V+T I ++ + +V + + G A++F + I+VD++ +
Sbjct: 242 GEEEEIMEQPVVTGIAFDKDEAKVTVV--GVPDKPGIAAQIFGALAEANINVDMIVQNVS 299
Query: 433 ---EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI--------ISLIG 481
+ ++ T+ +L+ +E LE+ + + + S+ +S++G
Sbjct: 300 EDGKTDITFTVPRD----------DLEKALELLEE--VKDEIGAESVTYDDDIAKVSVVG 347
Query: 482 NVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
RS + K F L G+N+QMIS S++ IS+++++ E VRALHE F
Sbjct: 348 VGMRSHPGVAAKMFEALAEEGINIQMIS--TSEIKISVLIDEKYLELAVRALHEAF 401
|
Length = 404 |
| >gnl|CDD|236364 PRK09034, PRK09034, aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Score = 265 bits (681), Expect = 4e-83
Identities = 148/469 (31%), Positives = 239/469 (50%), Gaps = 29/469 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
V+KFGGSSLASAE+ ++V ++ S P ER ++V+SA GK + LL+ +AV
Sbjct: 3 VVKFGGSSLASAEQFKKVLNIVKSDP-ERKIVVVSAPGKRFKEDTKVTDLLILYAEAV-- 59
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
+ D + + ELG+D I+ E LE L R D
Sbjct: 60 -LAGEDYEDIFEAIIARYAEIAKELGLDADILEKIEEILEHLANL---ASRNPDRLLDAF 115
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
+ GE ++ ++ AAYLN G+ AR D + G I TD+ NA +L +Y + K D
Sbjct: 116 KARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDE 175
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
L IP GF G + I T RGGSD+T + + + + + DVDG+ +P
Sbjct: 176 K--LVIP---GFFG-VTKDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANP 229
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I + K + +T+ E EL+Y G V H +++ PA G IP+ +KN+ NP PGTLI
Sbjct: 230 RIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVP 289
Query: 378 SRD-MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
RD +K +T I + T + I M + GF KV ED GIS + + + L
Sbjct: 290 DRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDL 349
Query: 437 SLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQ---HRSIISLIGNVQRSSL-ILEK 492
S+ + R+L ++ D ++ E+++ + L+ +II ++G R ++ + K
Sbjct: 350 SIIIR-----ERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAK 404
Query: 493 AFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDL 541
+ L + +N+QMI+QG+S+++I V +++AE+ V+A++ FF+ L
Sbjct: 405 ITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKEVL 453
|
Length = 454 |
| >gnl|CDD|239791 cd04258, AAK_AKiii-LysC-EC, AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 1e-78
Identities = 116/301 (38%), Positives = 166/301 (55%), Gaps = 19/301 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A M A ++ S + ++V+SA TN L+ + A S I
Sbjct: 3 VAKFGGTSVADYAAMLRCAAIVKSDAS-VRLVVVSASAGVTNLLVALADAAES--GEEIE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIA---THLEELEQLLKGIAMLKELTPRSRDYLVSF 200
I +L ++ +H ++ LG + A LEEL QL +G A+L EL+P SRD L+SF
Sbjct: 60 SIPQLHEIRAIHFAILNRLGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSF 119
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE MS+ +F+ L + GV A +D + T F A A+A+ +
Sbjct: 120 GERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGRAAPDL---NALAEL-AAKLLKP 174
Query: 261 LAIP--IVT-GFLGK--AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
L +VT GF+G RT TTLGRGGSD +A + +AL +E+Q+W DV G+ T
Sbjct: 175 LLAGTVVVTQGFIGSTEKGRT---TTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTT 231
Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
DP I P A+ + ++F EAAE+A FGA+VLHP ++ PA +IPV V +S +P A GTLI
Sbjct: 232 DPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLI 291
Query: 376 R 376
Sbjct: 292 T 292
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. Length = 292 |
| >gnl|CDD|236358 PRK08961, PRK08961, bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Score = 260 bits (665), Expect = 5e-77
Identities = 134/469 (28%), Positives = 244/469 (52%), Gaps = 30/469 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V+KFGG+S++ R +A+++ E R ++V+SA+ +N+L E ++
Sbjct: 11 VLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNEL----EAIIAAAGAG 66
Query: 142 ISCIDELSFVKDLHHRTVDELGID-RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
S ++ ++ H + ELG+D +++A L L++LL GI L + R + ++
Sbjct: 67 DS-ASRVAAIRQRHRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQ 125
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD--WI 258
GE +ST + AAYL G+ DA + ++ + Y +V+ + D
Sbjct: 126 GELLSTTLGAAYLEASGLDMGWLDAREW-LTALPQPNQSE--WSQYLSVSCQWQSDPALR 182
Query: 259 TDLA-----IPIVTGFLGK-AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312
A + I GF+ + A A+ LGRGGSD +A LG +++W DV G+
Sbjct: 183 ERFAAQPAQVLITQGFIARNADGGTAL--LGRGGSDTSAAYFAAKLGASRVEIWTDVPGM 240
Query: 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPG 372
+ +P P A+ + L +DEA E+A GA+VLHP+S++P R+ IP+ + ++ P+ G
Sbjct: 241 FSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSG 300
Query: 373 TLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS 432
T I + V +I K + ++ + + M Q GFLA VF+ F+ G+SVD++++S
Sbjct: 301 TSIDGDAEPVPGV-KAISRKNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSS 359
Query: 433 EVSLSLTLDPS-KLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLI-L 490
E +++++LDPS L + ++ L + +L +I V ++ + +SL+G RS L L
Sbjct: 360 ETNVTVSLDPSENLVNTDV----LAALSADLSQICRVKIIVPCAAVSLVGRGMRSLLHKL 415
Query: 491 EKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539
A+ V +ISQ ++ +N++ ++++ +A+ + LH ES
Sbjct: 416 GPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIES 462
|
Length = 861 |
| >gnl|CDD|239779 cd04246, AAK_AK-DapG-like, AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Score = 216 bits (552), Expect = 8e-67
Identities = 101/296 (34%), Positives = 149/296 (50%), Gaps = 64/296 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLL-LAGEKAVSCGVT 140
V KFGG+S+A ER++ VAE I + + V+V+SAMG TT++L+ LA K VS
Sbjct: 3 VQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLA--KEVS---- 56
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+PR D L+S
Sbjct: 57 ----------------------------------------------PRPSPRELDMLLST 70
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLH-GDWIT 259
GE +S + A LN++G+KA + G +T D NA I++ + + L GD
Sbjct: 71 GEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARIIDIDPKRILEALEEGD--- 127
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
+ +V GF G ITTLGRGGSD TA + AL +++ DVDGV T DP I
Sbjct: 128 ---VVVVAGFQG-VNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P A+ + +++DE E+A GA+VLHP+S+ A++ ++P+RV++S++ N PGTLI
Sbjct: 184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-PGTLI 238
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. In Corynebacterium glutamicum and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinase isoenzyme types found in Pseudomonas, C. glutamicum, and Amycolatopsis lactamdurans. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. The B. subtilis 168 AKII aspartokinase is also described as tetrameric consisting of two alpha and two beta subunits. Some archeal aspartokinases in this group lack recognizable ACT domains. Length = 239 |
| >gnl|CDD|236188 PRK08210, PRK08210, aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Score = 207 bits (529), Expect = 2e-61
Identities = 127/469 (27%), Positives = 220/469 (46%), Gaps = 89/469 (18%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGK-----TTNKLLLAGEKAVS 136
V KFGG+S+++ ER + I E + V+V+SAMG+ T+ LL
Sbjct: 5 VQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLL-------- 56
Query: 137 CGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDY 196
S V + E++ R +D
Sbjct: 57 ------------SLVGEEF-------------------------------SEISKREQDL 73
Query: 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD 256
L+S GE +S+ +F+ LN+ G+KA G IT D+FTNA I+E R+ +
Sbjct: 74 LMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVN----PDRIL-E 128
Query: 257 WITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+ + + +V GF G ITTLGRGGSD TA +G AL + + ++ DVDG++T D
Sbjct: 129 ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTAD 187
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI- 375
P I A+ + ++++E ++AY GA+V+HP+++ A + +IP+R++++Y+ ++PGTLI
Sbjct: 188 PRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYS-DSPGTLIT 246
Query: 376 -----RRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA 430
+ D+ + ++T I NVT + + + Y +VF + GISVD +
Sbjct: 247 SLGDAKGGIDVEERLITGIAHVSNVTQIKVKAKE--NAYDLQQEVFKALAEAGISVDFIN 304
Query: 431 TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI-VNLLQHRSIISLIGNVQRS-SL 488
+ T+ + E LE + + ++ ++ + +S++G
Sbjct: 305 IFPTEVVFTVSDED----------SEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPG 354
Query: 489 ILEKAFRVLRRSGVNVQMISQGA-SKVNISLIVNDDEAEQCVRALHETF 536
++ K L G+ I Q A S I ++V +++ E+ V ALH+ F
Sbjct: 355 VMAKIVTALSEEGIE---ILQSADSHTTIWVLVKEEDMEKAVNALHDAF 400
|
Length = 403 |
| >gnl|CDD|239794 cd04261, AAK_AKii-LysC-BS, AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 4e-61
Identities = 98/299 (32%), Positives = 143/299 (47%), Gaps = 70/299 (23%)
Query: 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLL-LAGEKAVSCGVT 140
V KFGG+S+AS ER++ VAE I + V+V+SAMG TT++L+ LA K +S
Sbjct: 3 VQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELA--KEIS---- 56
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
R D L+S
Sbjct: 57 ----------------------------------------------PRPPARELDVLLST 70
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE +S + A LN++G+KA + G +T A I++ + D I +
Sbjct: 71 GEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARIID---------IDPDRIRE 121
Query: 261 L----AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
L + IV GF G ITTLGRGGSD +A + ALG +++ DVDGV T D
Sbjct: 122 LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTAD 180
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
P I P A+ + +++DE E+A GA+VLHP+S+ A++ +P+RV +S++ PGTLI
Sbjct: 181 PRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-PGTLI 238
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and theronine. Also included in this CD are the aspartokinases of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single aspartokinases found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans aspartokinases are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. Length = 239 |
| >gnl|CDD|239778 cd04245, AAK_AKiii-YclM-BS, AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Score = 202 bits (517), Expect = 6e-61
Identities = 98/298 (32%), Positives = 148/298 (49%), Gaps = 19/298 (6%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNK------LLLAGEKAVSC 137
V+KFGGSSLASAE+ ++V ++ + P R ++V+SA GK LL+ +AV
Sbjct: 3 VVKFGGSSLASAEQFQKVKAIVKADPE-RKIVVVSAPGKRFKDDTKVTDLLILYAEAV-- 59
Query: 138 GVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL 197
+ + D + DELG+ SI+ E LE L D L
Sbjct: 60 -LAGEDTESIFEAIVDRYAEIADELGLPMSILEEIAEILENLANL---DYANPDYLLDAL 115
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
+ GE ++ ++ AAYLN G+ AR D G + TD+ NA IL +Y + K
Sbjct: 116 KARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKK-----L 170
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
++ GF G + + I T RGGSD+T + + + + DVDG+ +P
Sbjct: 171 RDSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANP 229
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
I + KP+ +T+ E EL+Y G V H +++ PA E IP+ +KN+ +P APGTLI
Sbjct: 230 RIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLI 287
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. Length = 288 |
| >gnl|CDD|239033 cd02115, AAK, Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Score = 199 bits (507), Expect = 3e-60
Identities = 99/302 (32%), Positives = 134/302 (44%), Gaps = 64/302 (21%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V+KFGGSS++S ER+R +A +++ +E R V+V A + T++LL GE
Sbjct: 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL------- 53
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
G A +T R D L + G
Sbjct: 54 ----------------------------------------GYARGLRITDRETDALAAMG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E MS + AA L + G+KA D GF + + I RL
Sbjct: 74 EGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGHVGKI----TKVSTDRLKSLLENG- 128
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
+PI++GF G + TLGRGGSD TA + AL + + DVDGV T DP P
Sbjct: 129 ILPILSGFGGTDEK--ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVP 186
Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGT 373
AK + LT++EAAELAY GA VL P++ PA IPVR+ N+ N P+ GT
Sbjct: 187 DAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDGGGT 246
Query: 374 LI 375
LI
Sbjct: 247 LI 248
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. Length = 248 |
| >gnl|CDD|239793 cd04260, AAK_AKi-DapG-BS, AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Score = 182 bits (463), Expect = 8e-54
Identities = 86/294 (29%), Positives = 150/294 (51%), Gaps = 55/294 (18%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+++ ER +VA+ + +E +PV+V+SAMG
Sbjct: 3 VQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMG-------------------- 42
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
R D D L L+ +++PR D L+S G
Sbjct: 43 ---------------RKGDPYATD---------TLINLVYAEN--SDISPRELDLLMSCG 76
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + + L G+KA G +T D+++NA I++ V + + +
Sbjct: 77 EIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIK-----VNPKKILSALKEG 131
Query: 262 AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHP 321
+ +V GF G +TTLGRGGSD TA +G AL + ++++ DVDG++T DP + P
Sbjct: 132 DVVVVAGFQG-VTEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVP 190
Query: 322 HAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
+A+ + ++++E ++A+ GA+V+HP+++ A + +IP+R++++ + N PGTLI
Sbjct: 191 NARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-PGTLI 243
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two beta subunits; the alpha (43 kD) and beta (17 kD) subunit formed by two in-phase overlapping genes. The alpha subunit contains the AK catalytic domain and two ACT domains. The beta subunit contains two ACT domains. Length = 244 |
| >gnl|CDD|239792 cd04259, AAK_AK-DapDC, AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Score = 170 bits (431), Expect = 2e-48
Identities = 97/301 (32%), Positives = 158/301 (52%), Gaps = 18/301 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V+KFGG+S++S R +A+L N +P+IV SA+ +NKL ++A+ +
Sbjct: 3 VLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHS 62
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
+ ++ H ++L +D ++A L +L++ L GI++LK+ +PR+R +++
Sbjct: 63 -----LFNAIQSRHLNLAEQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLAL 117
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGD--WI 258
GE MSTR+ AAYL G+K + DA ++ T A + + D
Sbjct: 118 GELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGGET--MNYLSARCESEYADALLQ 174
Query: 259 TDLA----IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
LA + I GF+ + LGRGGSD +A L ++W DV G+ T
Sbjct: 175 KRLADGAQLIITQGFIARNAHG-ETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFT 233
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTL 374
+P+ PHA+ + L +DEA E+A GA+VLHP+ + PAR +IP+ V+++ P GTL
Sbjct: 234 ANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTL 293
Query: 375 I 375
I
Sbjct: 294 I 294
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. Length = 295 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 1e-44
Identities = 130/479 (27%), Positives = 212/479 (44%), Gaps = 100/479 (20%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ S ER++ VA+ I V+V+SAMGKTT
Sbjct: 5 VQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTT----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
+EL +L K I+ R D L+S G
Sbjct: 48 --------------------------------DELVKLAKEIS--SNPPRREMDMLLSTG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + + L+++G A +G +T + A ILE + + L +
Sbjct: 74 EQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVV-- 131
Query: 262 AIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
+V GF G ITTLGRGGSD +A + ALG +++ DV GVLT DP +
Sbjct: 132 ---VVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLV 188
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI--RRS 378
P A+ + ++ DE ELA GA VLHP+++ AR +P+ V++S++ +APGTL+
Sbjct: 189 PEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-DAPGTLVTSPPP 247
Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTR----MLG---QYGFLAKVFSTFEDLGISVDVVAT 431
R S L + L + V +++ + +L + G A++F G++VD++
Sbjct: 248 RPRS---LGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQ 304
Query: 432 S--------------EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSII 477
S E L ++ + L E+ V + K++I
Sbjct: 305 SIHEGNSNDIAFTVAENELKKAEAVAEAIAPALGGAEVL-VETNVAKLSISGA------- 356
Query: 478 SLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
G + R I K F L +G+N++MIS S+V +S +++ ++ ++ +RA+ E F
Sbjct: 357 ---GMMGRPG-IAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALRAVCEAF 409
|
Length = 587 |
| >gnl|CDD|153205 cd04933, ACT_AK1-AT_1, ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 6e-43
Identities = 71/78 (91%), Positives = 73/78 (93%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQE 454
VTMLDI STRMLGQYGFLAKVFS FE LGISVDVVATSEVS+SLTLDPSKLWSRELIQQE
Sbjct: 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPSKLWSRELIQQE 60
Query: 455 LDHVVEELEKIAIVNLLQ 472
LDHVVEELEK A+VNLL
Sbjct: 61 LDHVVEELEKDAVVNLLV 78
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 78 |
| >gnl|CDD|236530 PRK09466, metL, bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 4e-41
Identities = 104/326 (31%), Positives = 159/326 (48%), Gaps = 32/326 (9%)
Query: 86 KFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCI 145
KFGGSSLA A+ R VA ++ + ++V+SA GKTTN+L+ + + + ++
Sbjct: 16 KFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQTDRLSAHQVQ 75
Query: 146 DEL-SFVKDLHHRTVDEL---GIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
L + +DL ++ L RS+++ + +LE+L + + +V G
Sbjct: 76 QTLRRYQQDL----IEGLLPAEQARSLLSRLISDLERLAALLD--GGINDAQYAEVVGHG 129
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEA-TYPAVAKRL--HGDWI 258
E S R+ AA LN+ G+ A DA F+ + + E +YP + + L H
Sbjct: 130 EVWSARLMAALLNQQGLPAAWLDARS--FLRAERAAQPQVDEGLSYPLLQQLLAQHPGKR 187
Query: 259 TDLAIPIVTGFLGK--AWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316
+VTGF+ + A T LGR GSD +AT IG G++ + +W DV GV + D
Sbjct: 188 L-----VVTGFISRNEAGETV---LLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSAD 239
Query: 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
P A +P L DEA+ELA A VLH ++++P DI ++++ SY P T I
Sbjct: 240 PRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIE 299
Query: 377 RSRDMSKAVLTSIVLKRNVTMLDIVS 402
R VL S R VT LD V
Sbjct: 300 R-------VLASGTGARIVTSLDDVC 318
|
Length = 810 |
| >gnl|CDD|236250 PRK08373, PRK08373, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 6e-41
Identities = 90/282 (31%), Positives = 142/282 (50%), Gaps = 30/282 (10%)
Query: 84 VMKFGGSSLASAERMREVAELILS-FPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGGSS+ E EL+ V+V+SA+ T+KLL E + I
Sbjct: 7 VVKFGGSSVRYD--FEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETFDKEALEEI 64
Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS-RDYLVSFG 201
++H LGID I++ +L++L +L + RDY++SFG
Sbjct: 65 E---------EIHEEFAKRLGIDLEILSPYLKKL------FNSRPDLPSEALRDYILSFG 109
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADI-LEATYPAVAKRLHGDWITD 260
E +S +FA L G+K + D ++I F NA I ++ + V K L + +
Sbjct: 110 ERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNAFIDIKKSKRNV-KIL-YELLER 166
Query: 261 LAIPIVTGFLG--KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+P+V GF+G +R TLGRGGSD +A +G L + + + DV+G+ T DP
Sbjct: 167 GRVPVVPGFIGNLNGFRA----TLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360
+ P A+ +PYL++DEA A G + LH +++ P +G IP+
Sbjct: 223 LVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPV-KGKIPI 263
|
Length = 341 |
| >gnl|CDD|239780 cd04247, AAK_AK-Hom3, AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 1e-40
Identities = 97/308 (31%), Positives = 155/308 (50%), Gaps = 24/308 (7%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE-RPVIVLSAMGK------TTNKLLLAGEKAVS 136
V KFGG+S+ +++ ++ + +V SA TTN+LL A ++A+
Sbjct: 4 VQKFGGTSVGKFP-DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALD 62
Query: 137 CGVTNISCIDELSFVKDLHHRTVDELGIDRSI-------IATHLEELEQLLKGIAMLKEL 189
I E ++ H + + + I E L + L+ +L E+
Sbjct: 63 AQEKAFHDIVED--IRSDHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEI 120
Query: 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAV 249
+PR++D ++S GE +S R AA L GV A D+ I DF+ + + Y +
Sbjct: 121 SPRTKDLVISTGEKLSCRFMAAVLRDRGVDAE---YVDLSHIVDLDFSIEALDQTFYDEL 177
Query: 250 AKRLHGDWITDLA--IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307
A+ L G+ IT +P+VTGF G ++ +GRG +DL A L E+Q+WK
Sbjct: 178 AQVL-GEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQIWK 235
Query: 308 DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN 367
+VDG+ T DP P A+ +P +T +EAAEL Y+G++V+HP +M + IP+R+KN N
Sbjct: 236 EVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVEN 295
Query: 368 PNAPGTLI 375
P GT+I
Sbjct: 296 PRGEGTVI 303
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Length = 306 |
| >gnl|CDD|235646 PRK05925, PRK05925, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 1e-40
Identities = 127/461 (27%), Positives = 213/461 (46%), Gaps = 39/461 (8%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERP-VIVLSAMGKTTNKLLLAGEKAVSCGVTNI 142
V KFGG+SL +AE +R V ++I E+P +V+SA+ T+ L C ++
Sbjct: 5 VYKFGGTSLGTAESIRRVCDIICK---EKPSFVVVSAVAGVTDLLEEF------CRLSKG 55
Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGE 202
+++ H ELGI+ S+ + E LE ++E++ + +++ GE
Sbjct: 56 KREALTEKIREKHEEIAKELGIEFSL-SPWWERLEHFED----VEEISSEDQARILAIGE 110
Query: 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW----I 258
+S + AY + +A + I TDD L A P +A + W +
Sbjct: 111 DISASLICAYCCTYVLPLEFLEARQV--ILTDD----QYLRAV-PDLA-LMQTAWHELAL 162
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+ AI I+ GF+G A + T LGRGGSD +A+ I + +E++++ DV+G+ T DP
Sbjct: 163 QEDAIYIMQGFIG-ANSSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPK 221
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
I A+ +P L+F+E LA FGA+VLHP ++P IP+ V ++++ GT I S
Sbjct: 222 IIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYAS 281
Query: 379 RDMS--KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSL 436
+ + ++ LK+N L V LG L V LGI +V + +
Sbjct: 282 DKEVSYEPRIKALSLKQN-QALWSVDYNSLGLVR-LEDVLGILRSLGIVPGLVMAQNLGV 339
Query: 437 SLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRV 496
T+D + E Q H+ + L V+ ++I++IG S ++
Sbjct: 340 YFTIDDDDISE-EYPQ----HLTDALSAFGTVSCEGPLALITMIGAKLASWKVVRTFTEK 394
Query: 497 LRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537
LR V Q S + ++L+VN++ A LH +
Sbjct: 395 LRGYQTPVFCWCQ--SDMALNLVVNEELAVAVTELLHNDYV 433
|
Length = 440 |
| >gnl|CDD|181563 PRK08841, PRK08841, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 150 bits (380), Expect = 3e-40
Identities = 126/464 (27%), Positives = 209/464 (45%), Gaps = 103/464 (22%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ S ER++ VAE I+ N+ + V+V+SAM TN+LL
Sbjct: 5 VQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLL------------- 51
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFG 201
L + VD + T R D L+S G
Sbjct: 52 -----------GLAKQ-VDSVP--------------------------TARELDVLLSAG 73
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDL 261
E +S + A LNK+G AR +T + +A I K + IT+L
Sbjct: 74 EQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATI---------KHIDTSTITEL 124
Query: 262 A----IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
I IV GF G+ ITTLGRGGSD TA + AL E Q++ DVDGV TCDP
Sbjct: 125 LEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
+ +A+ + + F +A GA+VLH S++ A + +P+RV +S+ GTLI+
Sbjct: 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVGE-GTLIKG 242
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISV-DVVATSEVSL 436
+ I L+R++ ++++ S L + + LGI V +V+ ++
Sbjct: 243 EAGTQA--VCGIALQRDLALIEVESES-------LPSLTKQCQMLGIEVWNVIEEAD--- 290
Query: 437 SLTLDPSKLWSRELIQQE----LDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEK 492
++ +I+Q+ L V + +KI + S+++L+G ++ ++E
Sbjct: 291 ---------RAQIVIKQDACAKLKLVFD--DKIRNSESV---SLLTLVGL--EANGMVEH 334
Query: 493 AFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
A +L ++G++V+ S L+++ ++ LH+T+
Sbjct: 335 ACNLLAQNGIDVRQCSTEPQSS--MLVLDPANVDRAANILHKTY 376
|
Length = 392 |
| >gnl|CDD|216067 pfam00696, AA_kinase, Amino acid kinase family | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-38
Identities = 84/289 (29%), Positives = 120/289 (41%), Gaps = 66/289 (22%)
Query: 82 TCVMKFGGSSLASAERMREVAELILSFPNE-RPVIVLSAMGKTTNKLLLAGEKAVSCGVT 140
V+K GGSSL + ++ +AE I V+V+S G T+KLL A
Sbjct: 2 RIVIKLGGSSLTDKDEIKRLAEEIAKLLALGIKVVVVSGGGGFTDKLLAAYGIEAG---- 57
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
H L ++ + A +VS
Sbjct: 58 -----------FVRHTAGATGLVLEAQLAAELN---------------------RIVVSL 85
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE + R A L+ G+ A + D D I ++LEA
Sbjct: 86 GERLGARAVALLLSDGGLPAVRLDLVDTEAI-------KELLEAGV-------------- 124
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
+P++TGF G+ T TTLGRG SD A + +ALG ++ + DVDGV T DP +
Sbjct: 125 --VPVITGFGGEN-DTGETTTLGRGSSDTLAALLAEALGADKLIILTDVDGVYTADPRKN 181
Query: 321 PHAKPVPYLTFDEAAELA-----YFGAQVLHPQSMRPAREGDIPVRVKN 364
P AK +P L++DEA EL G +V HP +++ AR G IPV + N
Sbjct: 182 PDAKLIPELSYDEAEELLAAGDVTGGMKVKHPAALKAARRGGIPVHIIN 230
|
This family includes kinases that phosphorylate a variety of amino acid substrates, as well as uridylate kinase and carbamate kinase. This family includes: Aspartokinase EC:2.7.2.4, Acetylglutamate kinase EC:2.7.2.8, Glutamate 5-kinase EC:2.7.2.11, Uridylate kinase EC:2.7.4.-, Carbamate kinase EC:2.7.2.2. Length = 230 |
| >gnl|CDD|131133 TIGR02078, AspKin_pair, Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 5e-34
Identities = 90/281 (32%), Positives = 139/281 (49%), Gaps = 33/281 (11%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVL-SAMGKTTNKLLLAGEKAVSCGVTNI 142
V+KFGGSS+ A E EL+ S E+ VIV+ SA+ T+ L+ I
Sbjct: 3 VVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTFDKSAALEI 60
Query: 143 SCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRS-RDYLVSFG 201
+++ ELG+D +I++ +L+EL +L + RDY++S G
Sbjct: 61 E---------EIYEEFAKELGVDLNILSPYLKELFNP-------PDLPKEALRDYILSLG 104
Query: 202 ECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA--DILEATYPAVAKRLHGDWIT 259
E +S IFA G+ + D +DI F DF NA DI ++ A K L+ + +
Sbjct: 105 ERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAFIDIKKSKRNA--KILY-EVLE 155
Query: 260 DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319
IP++ GF G TLGRGGSD +A +G L + + + DV+G+ T DP +
Sbjct: 156 SGKIPVIPGFYGN--LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213
Query: 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360
P A+ +PYL+++E A G + L ++ A+E IPV
Sbjct: 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPV 254
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between [Amino acid biosynthesis, Aspartate family]. Length = 327 |
| >gnl|CDD|153190 cd04918, ACT_AK1-AT_2, ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 1e-32
Identities = 55/65 (84%), Positives = 59/65 (90%)
Query: 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
RSIISLIGNVQRSSLILE+AF VL GVNVQMISQGASKVNISLIVND EAE CV+ALH
Sbjct: 1 RSIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALH 60
Query: 534 ETFFE 538
++FFE
Sbjct: 61 KSFFE 65
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65 |
| >gnl|CDD|153184 cd04912, ACT_AKiii-LysC-EC-like_1, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 4e-27
Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 3/78 (3%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQE 454
+T+L+I S RMLG +GFLAKVF F G+SVD+++TSEVS+SLTLDP+K S Q
Sbjct: 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKNLS---DQLL 57
Query: 455 LDHVVEELEKIAIVNLLQ 472
LD +V++L +I V + +
Sbjct: 58 LDALVKDLSQIGDVEVEE 75
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75 |
| >gnl|CDD|236396 PRK09181, PRK09181, aspartate kinase; Validated | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-25
Identities = 124/494 (25%), Positives = 211/494 (42%), Gaps = 68/494 (13%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPN--ERP---VIVLSAMGKTTNKLLLAGEKAVSCG 138
V K GG+S++ V + I+ P E + V+SA G T+ LL +K G
Sbjct: 6 VEKIGGTSMS---AFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTD-ALLEHKKTGEPG 61
Query: 139 V-------TNISCIDELSFVKD---LHHRTVDELGIDRS----IIATHLEELEQLLKGIA 184
V + + + L V+ + + G+D + I +EE L +
Sbjct: 62 VYALFAKANDEAWREALEAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQ 121
Query: 185 --------MLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236
L E R+ L S GE S A L GV AR D G+ D
Sbjct: 122 RLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDL--TGWDDDDPL 179
Query: 237 TNADILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCA---ITTLGRGGSDLTA 291
T + ++ + + D+ +PIVTG+ C + T RG S++T
Sbjct: 180 TLDERIKKAFKDI----------DVTKELPIVTGYAK-----CKEGLMRTFDRGYSEMTF 224
Query: 292 TTIGKALGLQEIQVWKDVDGVLTCDPNI--HPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349
+ I G E + K+ + + DP + P+ +D A +LA G + +HP++
Sbjct: 225 SRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKA 283
Query: 350 MRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQY 409
+ R+ IP+R+KN++ P PGTLI + + + I V L++ M+G+
Sbjct: 284 AKGLRQAGIPLRIKNTFEPEHPGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGED 343
Query: 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKI---A 466
G+ ++ +S AT+ +++ L S + L V+ ELEK A
Sbjct: 344 GYDLEILEILTRHKVSYISKATNANTITHYLWGSL--------KTLKRVIAELEKRYPNA 395
Query: 467 IVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE 526
V ++ +I+S IG+ +L KA + L +G+NV + Q +VN+ +V++D+ E
Sbjct: 396 EVT-VRKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYE 454
Query: 527 QCVRALHETFFESD 540
+ + ALHE E+
Sbjct: 455 KAICALHEALVENH 468
|
Length = 475 |
| >gnl|CDD|153164 cd04892, ACT_AK-like_2, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 8e-19
Identities = 27/65 (41%), Positives = 47/65 (72%), Gaps = 1/65 (1%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
+++S++G R + + + F L +G+N+ MISQG+S+VNIS +V++D+A++ V+ALH
Sbjct: 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALH 60
Query: 534 ETFFE 538
E FF
Sbjct: 61 EEFFL 65
|
This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different AK isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are AKs with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 65 |
| >gnl|CDD|239781 cd04248, AAK_AK-Ectoine, AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 9e-17
Identities = 84/323 (26%), Positives = 142/323 (43%), Gaps = 53/323 (16%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNER---PVIVLSAMGKTTNKLLLAGEKAVSCGV- 139
V K GG+S+++ V + I+ P+ V V+SA TN LL +K + G+
Sbjct: 3 VEKIGGTSMSAFG---AVLDNIILKPDSDLYGRVFVVSAYSGVTN-ALLEHKKTGAPGIY 58
Query: 140 -----TNISCIDELSFVKD-LH--HRTVDELGIDR----SIIATHLEELEQLLKGIAM-- 185
+ + + LS +K + + ++G+D + I +++ L +A
Sbjct: 59 QHFVDADEAWREALSALKQAMLKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLC 118
Query: 186 ------LKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239
L E +R+ L S GE S A L GV AR D G+ + D T
Sbjct: 119 SSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDL--SGWRDSGDMTLD 176
Query: 240 DILEATYPAVAKRLHGDWITDLA--IPIVTGFLGKAWRTCA---ITTLGRGGSDLTATTI 294
+ + + + D +PIVTG+ CA + RG S++T + I
Sbjct: 177 ERISEAFRDI----------DPRDELPIVTGYAK-----CAEGLMREFDRGYSEMTFSRI 221
Query: 295 GKALGLQEIQVWKDVDGVLTCDPNI--HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRP 352
G E + K+ + + DP + A+P+ +D A +LA G + +HP++ +
Sbjct: 222 AVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKG 280
Query: 353 AREGDIPVRVKNSYNPNAPGTLI 375
R+ IP+RVKN++ P+ PGTLI
Sbjct: 281 LRQAGIPLRVKNTFEPDHPGTLI 303
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Length = 304 |
| >gnl|CDD|153162 cd04890, ACT_AK-like_1, ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 73.7 bits (182), Expect = 1e-16
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQEL 455
T ++I M G+ GFL K+F E GISVD++ TSE S++L LD S L ++L
Sbjct: 1 TAIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLL------PKKL 54
Query: 456 DHVVEELE 463
++ ELE
Sbjct: 55 KRLLAELE 62
|
This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 62 |
| >gnl|CDD|153204 cd04932, ACT_AKiii-LysC-EC_1, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 5e-14
Identities = 31/75 (41%), Positives = 46/75 (61%), Gaps = 3/75 (4%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQEL 455
T++ + S ML GFLAKVF ISVD++ TSE+S++LTLD + S +L+ Q L
Sbjct: 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTSDQLLTQAL 61
Query: 456 DHVVEELEKIAIVNL 470
++EL +I V +
Sbjct: 62 ---LKELSQICDVKV 73
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75 |
| >gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-12
Identities = 24/60 (40%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
+ +S++G R + + K F L +G+NV MISQ S+VNIS V++ + E+ V+ALH
Sbjct: 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60 |
| >gnl|CDD|153189 cd04917, ACT_AKiii-LysC-EC_2, ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 3e-12
Identities = 20/65 (30%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
++++LIGN + ++ + ++ F L +NV+MI GAS N+ +V +++ ++ V+ LH
Sbjct: 2 ALVALIGNDISETAGVEKRIFDALE--DINVRMICYGASNHNLCFLVKEEDKDEVVQRLH 59
Query: 534 ETFFE 538
FE
Sbjct: 60 SRLFE 64
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 64 |
| >gnl|CDD|153196 cd04924, ACT_AK-Arch_2, ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-10
Identities = 22/62 (35%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 476 IISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534
+++++G+ R + + + F L ++G+NV MISQG+S+ NIS +V +D+ V+A+H+
Sbjct: 3 VVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHD 62
Query: 535 TF 536
F
Sbjct: 63 EF 64
|
Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153188 cd04916, ACT_AKiii-YclM-BS_2, ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 8e-10
Identities = 19/65 (29%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
++I ++G ++++ + +A L ++G+N++MI+QG+S+++I + V++++A++ V+A++
Sbjct: 2 ALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIY 61
Query: 534 ETFFE 538
E FF
Sbjct: 62 EEFFN 66
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 4e-09
Identities = 25/61 (40%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 477 ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535
+S++G RS + K F L +G+N++MIS S++ IS ++++D+AE+ VRALHE
Sbjct: 3 VSIVGAGMRSHPGVAAKMFEALAEAGINIEMIS--TSEIKISCLIDEDDAEKAVRALHEA 60
Query: 536 F 536
F
Sbjct: 61 F 61
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|153191 cd04919, ACT_AK-Hom3_2, ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 5e-09
Identities = 21/65 (32%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
+I+SL+G ++ + I + F L +N++MISQGAS++NIS ++++ +A + + +H
Sbjct: 2 AILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIH 61
Query: 534 ETFFE 538
E
Sbjct: 62 TNLLE 66
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153194 cd04922, ACT_AKi-HSDH-ThrA_2, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-09
Identities = 23/65 (35%), Positives = 44/65 (67%), Gaps = 1/65 (1%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
SI++L+G+ + + F L ++ VN++ I+QG+S+ NIS ++++D+A + +RA+H
Sbjct: 2 SILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVH 61
Query: 534 ETFFE 538
E FF
Sbjct: 62 ERFFL 66
|
This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|153207 cd04935, ACT_AKiii-DAPDC_1, ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 7e-09
Identities = 26/77 (33%), Positives = 48/77 (62%), Gaps = 3/77 (3%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQE 454
+ ++ + + M Q GFLA VF+ F+ G+SVD+V+TSE +++++LDP L
Sbjct: 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPD---PNGLDPDV 57
Query: 455 LDHVVEELEKIAIVNLL 471
LD ++++L +I V ++
Sbjct: 58 LDALLDDLNQICRVKII 74
|
This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 75 |
| >gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 8e-09
Identities = 26/61 (42%), Positives = 42/61 (68%), Gaps = 3/61 (4%)
Query: 477 ISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535
+S++G RS + K F+ L +G+N++MIS S++ IS +V++D+AE+ VRALHE
Sbjct: 3 VSIVGAGMRSHPGVAAKMFKALAEAGINIEMIS--TSEIKISCLVDEDDAEKAVRALHEA 60
Query: 536 F 536
F
Sbjct: 61 F 61
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|153193 cd04921, ACT_AKi-HSDH-ThrA-like_1, ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 1e-08
Identities = 18/43 (41%), Positives = 31/43 (72%)
Query: 494 FRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
F L R+G+NV +ISQ +S+ +IS +V++ +A++ + AL E F
Sbjct: 22 FSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEF 64
|
This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-activated, threonine-sensitive enzyme whose ACT domains were shown to be involved in allosteric activation. Also included in this CD is the first of two ACT domains of a tetrameric, monofunctional, threonine-sensitive, AK found in Methanococcus jannaschii and other related archaeal species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 80 |
| >gnl|CDD|153140 cd04868, ACT_AK-like, ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Score = 49.0 bits (118), Expect = 6e-08
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKL 445
+ IV M G G AK+FS + GI+VD+++ S EV++S T+D S L
Sbjct: 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDL 52
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli (EC), three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehydrogenase (HSDH). ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. The third isoenzyme, AKIII (LysC), is monofunctional and is involved in lysine synthesis. The three Bacillus subtilis (BS) isoenzymes, AKI (DapG), AKII (LysC), and AKIII (YclM), are feedback inhibited by meso-diaminopimelate, lysine, and lysine plus threonine, respectively. The E. coli lysine-sensitive AK is described as a homodimer, whereas, the B. subtilis lysine-sensitive AK is described as is a heterodimeric complex of alpha- and beta- subunits that are formed from two in-frame overlapping genes. A single AK enzyme type has been described in Pseudomonas, Amycolatopsis, and Corynebacterium, and apparently, unique to cyanobacteria, are aspartokinases with two tandem pairs of ACT domains, C-terminal to the catalytic domain. The fungal aspartate pathway is regulated at the AK step, with L-Thr being an allosteric inhibitor of the Saccharomyces cerevisiae AK (Hom3). At least two distinct AK isoenzymes can occur in higher plants, a monofunctional lysine-sensitive isoenzyme, which is involved in the overall regulation of the pathway and can be synergistically inhibited by S-adenosylmethionine. The other isoenzyme is a bifunctional, threonine-sensitive AK-HSDH protein. Also included in this AK family CD are the ACT domains of the Methylomicrobium alcaliphilum AK; the first enzyme of the ectoine biosynthetic pathway found in this bacterium and several other halophilic/halotolerant bacteria. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 60 |
| >gnl|CDD|153187 cd04915, ACT_AK-Ectoine_2, ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 7e-07
Identities = 15/64 (23%), Positives = 31/64 (48%)
Query: 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534
+I+S+IG + +L + L +G+ Q V++ +V+ D+ + ++ALH
Sbjct: 3 AIVSVIGRDLSTPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHA 62
Query: 535 TFFE 538
E
Sbjct: 63 ALVE 66
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 66 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 5e-06
Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDP------ 442
++++ NV L I M+G+ G AK+F T + GI++ +++TSEV +S +D
Sbjct: 342 VLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDAEDGDKA 401
Query: 443 ----SKLWSRELIQQELDHVVEELEKIAI--VNLLQHRSIISLIGNVQRSSLILEKAFRV 496
+ + E Q E++ ++ + V L ++++ +++ NV + F
Sbjct: 402 LRAVCEAFELEDSQIEINPTASGQDEPEVRGVALDRNQAQLAIR-NVPDRPGMAASIFGA 460
Query: 497 LRRSGVNVQMI--SQGASKV---NISLIVNDDEAEQCVRALHE 534
L + ++V MI SQ +IS V ++ E + L E
Sbjct: 461 LAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRE 503
|
Length = 587 |
| >gnl|CDD|239787 cd04254, AAK_UMPK-PyrH-Ec, UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
VDGV DP +P+AK +LT+DE G +V+ + R+ ++P+ V +
Sbjct: 156 TKVDGVYDADPKKNPNAKRYDHLTYDEVLSK---GLKVMDATAFTLCRDNNLPIVV---F 209
Query: 367 NPNAPGTLIR 376
N N PG L++
Sbjct: 210 NINEPGNLLK 219
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). Length = 231 |
| >gnl|CDD|239772 cd04239, AAK_UMPK-like, AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 8e-06
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
+VDGV DP +P AK +++DE + G +V+ ++ R IP+ V +
Sbjct: 154 TNVDGVYDADPKKNPDAKKYDRISYDELLKK---GLKVMDATALTLCRRNKIPIIV---F 207
Query: 367 NPNAPGTLIR 376
N PG L+R
Sbjct: 208 NGLKPGNLLR 217
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Also included in this CD are the alpha and beta subunits of the Mo storage protein (MosA and MosB) characterized as an alpha4-beta4 octamer containing an ATP-dependent, polynuclear molybdenum-oxide cluster. These and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). Length = 229 |
| >gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 20/87 (22%), Positives = 47/87 (54%)
Query: 460 EELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLI 519
E + ++L ++++ +++ G + L + F L +G+NV +I+Q +S+ +IS
Sbjct: 288 MEEPIVKGLSLDRNQARVTVSGLGMKGPGFLARVFGALAEAGINVDLITQSSSETSISFT 347
Query: 520 VNDDEAEQCVRALHETFFESDLANLDC 546
V+ ++A+Q L S L++++
Sbjct: 348 VDKEDADQAKTLLKSELNLSALSSVEV 374
|
Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer.The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis [Amino acid biosynthesis, Aspartate family]. Length = 441 |
| >gnl|CDD|223602 COG0528, PyrH, Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
VDGV DP P AK LT+DE ++ +V+ P + AR+ IP+ V +
Sbjct: 162 NKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGL---KVMDPTAFSLARDNGIPIIV---F 215
Query: 367 NPNAPGTLIR 376
N N PG L R
Sbjct: 216 NINKPGNLKR 225
|
Length = 238 |
| >gnl|CDD|153206 cd04934, ACT_AK-Hom3_1, CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-05
Identities = 24/77 (31%), Positives = 47/77 (61%), Gaps = 5/77 (6%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQE 454
+ +++I S + +GFLA++F+ + +SVD+++TSEV +S+ L + E
Sbjct: 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMALHME---NAED--TN 55
Query: 455 LDHVVEELEKIAIVNLL 471
LD V++L+K+ V++L
Sbjct: 56 LDAAVKDLQKLGTVDIL 72
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73 |
| >gnl|CDD|234735 PRK00358, pyrH, uridylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 4e-05
Identities = 26/70 (37%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
+VDGV DP P AK LT+DE E +V+ ++ AR+ IP+ V +
Sbjct: 156 TNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGL---KVMDATAISLARDNKIPIIV---F 209
Query: 367 NPNAPGTLIR 376
N N PG L R
Sbjct: 210 NMNKPGNLKR 219
|
Length = 231 |
| >gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 24/140 (17%)
Query: 410 GFLAKVFSTFEDLGISVDVVATSE-------VSLSLTL-----DPSKLWSRELIQQELDH 457
G A +F + ISVD++ S+ +S T+ + ++ REL +Q
Sbjct: 452 GMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAAQKVLRELAKQLPGA 511
Query: 458 VVEELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNI 516
VE+ IA V S++G + + + FR L +G+N++MI+ S++
Sbjct: 512 EVEDGPAIAKV---------SIVGAGMPGTPGVAARMFRALADAGINIEMIA--TSEIRT 560
Query: 517 SLIVNDDEAEQCVRALHETF 536
S +V +D+ + ++A+H+ F
Sbjct: 561 SCVVAEDDGVKALQAVHQAF 580
|
Length = 587 |
| >gnl|CDD|213681 TIGR02075, pyrH_bact, uridylate kinase | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSY 366
+VDGV T DP + AK +T++EA + +V+ + AR+ ++P+ V +
Sbjct: 157 TNVDGVYTADPKKNKDAKKYDTITYNEALKK---NLKVMDLTAFALARDNNLPIVV---F 210
Query: 367 NPNAPGTLIR 376
N + PG L +
Sbjct: 211 NIDKPGALKK 220
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076 [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 232 |
| >gnl|CDD|153192 cd04920, ACT_AKiii-DAPDC_2, ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 1e-04
Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 475 SIISLIGNVQRSSLI-LEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
+ +SL+G RS L L A V + V ++SQ A+ +N++ +V++D+A+ LH
Sbjct: 1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLH 58
Query: 534 ETFFE 538
E
Sbjct: 59 FQLIE 63
|
This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|153195 cd04923, ACT_AK-LysC-DapG-like_2, ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 3e-04
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 400 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
IV M G AK+F + GI++++++TSE+ +S
Sbjct: 5 IVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKIS 42
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
| >gnl|CDD|233075 TIGR00656, asp_kin_monofn, aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 477 ISLIGNVQRSSL----------ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE 526
I+L NV R ++ L + F L +NV +ISQ S+ +ISL V++ +A+
Sbjct: 254 IALRKNVTRVTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDAD 313
Query: 527 QCVRALHETFFESDLANLD 545
+ VRAL + + L ++
Sbjct: 314 EAVRALKDQSGAAGLDRVE 332
|
This model describes a subclass of aspartate kinases. These are mostly Lys-sensitive and not fused to homoserine dehydrogenase, unlike some Thr-sensitive and Met-sensitive forms. Homoserine dehydrogenase is part of Thr and Met but not Lys biosynthetic pathways. Aspartate kinase catalyzes a first step in the biosynthesis from Asp of Lys (and its precursor diaminopimelate), Met, and Thr. In E. coli, a distinct isozyme is inhibited by each of the three amino acid products. The Met-sensitive (I) and Thr-sensitive (II) forms are bifunctional enzymes fused to homoserine dehydrogenases and form homotetramers, while the Lys-sensitive form (III) is a monofunctional homodimer. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases [Amino acid biosynthesis, Aspartate family]. Length = 401 |
| >gnl|CDD|153208 cd04936, ACT_AKii-LysC-BS-like_2, ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Score = 37.5 bits (88), Expect = 8e-04
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 400 IVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLD 441
IV M G AK+F + GI++++++TSE+ +S +D
Sbjct: 5 IVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLID 46
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and threonine. Conserved residues in the ACT domains have been shown to be involved in this concerted feedback inhibition. Also included in this CD are the AKs of the extreme thermophile, Thermus thermophilus HB27, the Gram-negative obligate methylotroph, Methylophilus methylotrophus AS1, and those single AKs found in Pseudomons, C. glutamicum, and Amycolatopsis lactamdurans. B. subtilis strain 168 AKII, and the C. glutamicum, Streptomyces clavuligerus and A. lactamdurans AKs are described as tetramers consisting of two alpha and two beta subunits; the alpha (44 kD) and beta (18 kD) subunits formed by two in-phase overlapping polypeptides. This CD includes the second ACT domain C-terminal to the AK catalytic domain of the alpha subunit and the second ACT domain of the beta subunit that lacks the AK catalytic domain. Unlike the C. glutamicum AK beta subunit, which is involved in feedback regulation, the B. subtilis AKII beta subunit is not. Cyanobacteria AKs are unique to this CD and they have a unique domain architecture with two tandem pairs of ACT domains, C-terminal to the catalytic AK domain. In this CD, the second and fourth cyanobacteria AK ACT domains are present. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 63 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| KOG0456 | 559 | consensus Aspartate kinase [Amino acid transport a | 100.0 | |
| PLN02551 | 521 | aspartokinase | 100.0 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 100.0 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 100.0 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 100.0 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 100.0 | |
| PRK09181 | 475 | aspartate kinase; Validated | 100.0 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 100.0 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 100.0 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 100.0 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 100.0 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 100.0 | |
| PRK08841 | 392 | aspartate kinase; Validated | 100.0 | |
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 100.0 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 100.0 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 100.0 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 100.0 | |
| cd04245 | 288 | AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Ki | 100.0 | |
| cd04258 | 292 | AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Ki | 100.0 | |
| cd04244 | 298 | AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kina | 100.0 | |
| cd04257 | 294 | AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfa | 100.0 | |
| cd04243 | 293 | AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kina | 100.0 | |
| cd04259 | 295 | AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Super | 100.0 | |
| cd04247 | 306 | AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfa | 100.0 | |
| PRK08373 | 341 | aspartate kinase; Validated | 100.0 | |
| TIGR02078 | 327 | AspKin_pair Pyrococcus aspartate kinase subunit, p | 100.0 | |
| cd04248 | 304 | AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase S | 100.0 | |
| cd04261 | 239 | AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kina | 100.0 | |
| cd04234 | 227 | AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK) | 100.0 | |
| cd04246 | 239 | AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kina | 100.0 | |
| cd04260 | 244 | AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase | 100.0 | |
| cd02115 | 248 | AAK Amino Acid Kinases (AAK) superfamily, catalyti | 100.0 | |
| PRK12314 | 266 | gamma-glutamyl kinase; Provisional | 100.0 | |
| PF00696 | 242 | AA_kinase: Amino acid kinase family Match to Gluta | 99.98 | |
| cd04242 | 251 | AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K | 99.97 | |
| PRK14557 | 247 | pyrH uridylate kinase; Provisional | 99.97 | |
| cd04239 | 229 | AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-lik | 99.97 | |
| PRK00358 | 231 | pyrH uridylate kinase; Provisional | 99.97 | |
| PRK14558 | 231 | pyrH uridylate kinase; Provisional | 99.96 | |
| cd04254 | 231 | AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbi | 99.96 | |
| TIGR02075 | 233 | pyrH_bact uridylate kinase. This protein, also cal | 99.96 | |
| cd04253 | 221 | AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMP | 99.95 | |
| PRK13402 | 368 | gamma-glutamyl kinase; Provisional | 99.95 | |
| TIGR02076 | 221 | pyrH_arch uridylate kinase, putative. This family | 99.94 | |
| cd04249 | 252 | AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kina | 99.94 | |
| cd04250 | 279 | AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase | 99.94 | |
| PRK00942 | 283 | acetylglutamate kinase; Provisional | 99.93 | |
| PRK05429 | 372 | gamma-glutamyl kinase; Provisional | 99.93 | |
| TIGR00761 | 231 | argB acetylglutamate kinase. This model describes | 99.93 | |
| cd04238 | 256 | AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate | 99.92 | |
| PLN02418 | 718 | delta-1-pyrroline-5-carboxylate synthase | 99.92 | |
| TIGR01027 | 363 | proB glutamate 5-kinase. Bacterial ProB proteins h | 99.92 | |
| COG0528 | 238 | PyrH Uridylate kinase [Nucleotide transport and me | 99.92 | |
| PRK14058 | 268 | acetylglutamate/acetylaminoadipate kinase; Provisi | 99.92 | |
| PRK14556 | 249 | pyrH uridylate kinase; Provisional | 99.91 | |
| cd04241 | 252 | AAK_FomA-like AAK_FomA-like: This CD includes a fo | 99.89 | |
| PLN02512 | 309 | acetylglutamate kinase | 99.89 | |
| COG0548 | 265 | ArgB Acetylglutamate kinase [Amino acid transport | 99.88 | |
| CHL00202 | 284 | argB acetylglutamate kinase; Provisional | 99.87 | |
| cd04255 | 262 | AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes th | 99.86 | |
| cd04251 | 257 | AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kina | 99.85 | |
| cd04256 | 284 | AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase | 99.82 | |
| TIGR01092 | 715 | P5CS delta l-pyrroline-5-carboxylate synthetase. T | 99.82 | |
| PTZ00489 | 264 | glutamate 5-kinase; Provisional | 99.77 | |
| COG0263 | 369 | ProB Glutamate 5-kinase [Amino acid transport and | 99.75 | |
| TIGR01890 | 429 | N-Ac-Glu-synth amino-acid N-acetyltransferase. Thi | 99.73 | |
| cd04237 | 280 | AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) | 99.71 | |
| cd04236 | 271 | AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NA | 99.7 | |
| PRK07431 | 587 | aspartate kinase; Provisional | 99.69 | |
| PRK12353 | 314 | putative amino acid kinase; Reviewed | 99.67 | |
| PRK05279 | 441 | N-acetylglutamate synthase; Validated | 99.67 | |
| cd04252 | 248 | AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutam | 99.66 | |
| PLN02825 | 515 | amino-acid N-acetyltransferase | 99.62 | |
| cd04240 | 203 | AAK_UC AAK_UC: Uncharacterized (UC) amino acid kin | 99.61 | |
| PRK12352 | 316 | putative carbamate kinase; Reviewed | 99.61 | |
| TIGR00746 | 310 | arcC carbamate kinase. The seed alignment for this | 99.58 | |
| cd04235 | 308 | AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes bot | 99.54 | |
| PRK12686 | 312 | carbamate kinase; Reviewed | 99.46 | |
| cd04918 | 65 | ACT_AK1-AT_2 ACT domains located C-terminal to the | 99.44 | |
| cd04915 | 66 | ACT_AK-Ectoine_2 ACT domains located C-terminal to | 99.44 | |
| COG1608 | 252 | Predicted archaeal kinase [General function predic | 99.41 | |
| PRK04531 | 398 | acetylglutamate kinase; Provisional | 99.4 | |
| PRK12454 | 313 | carbamate kinase-like carbamoyl phosphate syntheta | 99.38 | |
| PRK12354 | 307 | carbamate kinase; Reviewed | 99.37 | |
| cd04937 | 64 | ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela | 99.26 | |
| cd04919 | 66 | ACT_AK-Hom3_2 ACT domains located C-terminal to th | 99.26 | |
| cd04920 | 63 | ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK | 99.26 | |
| cd04917 | 64 | ACT_AKiii-LysC-EC_2 ACT domains located C-terminal | 99.24 | |
| cd04922 | 66 | ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona | 99.22 | |
| PRK09411 | 297 | carbamate kinase; Reviewed | 99.21 | |
| KOG1154 | 285 | consensus Gamma-glutamyl kinase [Amino acid transp | 99.19 | |
| cd04916 | 66 | ACT_AKiii-YclM-BS_2 ACT domains located C-terminal | 99.12 | |
| cd04924 | 66 | ACT_AK-Arch_2 ACT domains of a monofunctional aspa | 99.03 | |
| PF13840 | 65 | ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 | 98.98 | |
| cd04933 | 78 | ACT_AK1-AT_1 ACT domains located C-terminal to the | 98.92 | |
| COG2054 | 212 | Uncharacterized archaeal kinase related to asparto | 98.85 | |
| cd04921 | 80 | ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc | 98.76 | |
| cd04923 | 63 | ACT_AK-LysC-DapG-like_2 ACT domains of the lysine- | 98.75 | |
| cd04892 | 65 | ACT_AK-like_2 ACT domains C-terminal to the cataly | 98.75 | |
| cd04936 | 63 | ACT_AKii-LysC-BS-like_2 ACT domains of the lysine- | 98.73 | |
| cd04934 | 73 | ACT_AK-Hom3_1 CT domains located C-terminal to the | 98.71 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 98.71 | |
| cd04935 | 75 | ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK | 98.63 | |
| TIGR00656 | 401 | asp_kin_monofn aspartate kinase, monofunctional cl | 98.52 | |
| PRK06291 | 465 | aspartate kinase; Provisional | 98.47 | |
| cd04868 | 60 | ACT_AK-like ACT domains C-terminal to the catalyti | 98.46 | |
| cd04912 | 75 | ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter | 98.44 | |
| COG0549 | 312 | ArcC Carbamate kinase [Amino acid transport and me | 98.38 | |
| PRK09436 | 819 | thrA bifunctional aspartokinase I/homoserine dehyd | 98.35 | |
| cd04890 | 62 | ACT_AK-like_1 ACT domains found C-terminal to the | 98.34 | |
| cd04937 | 64 | ACT_AKi-DapG-BS_2 ACT domains of the diaminopimela | 98.22 | |
| cd04912 | 75 | ACT_AKiii-LysC-EC-like_1 ACT domains located C-ter | 98.18 | |
| PF13840 | 65 | ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2 | 98.08 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 98.07 | |
| cd04913 | 75 | ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- | 98.05 | |
| cd04933 | 78 | ACT_AK1-AT_1 ACT domains located C-terminal to the | 98.03 | |
| cd04919 | 66 | ACT_AK-Hom3_2 ACT domains located C-terminal to th | 98.01 | |
| COG0527 | 447 | LysC Aspartokinases [Amino acid transport and meta | 98.0 | |
| cd04890 | 62 | ACT_AK-like_1 ACT domains found C-terminal to the | 97.97 | |
| cd04922 | 66 | ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctiona | 97.95 | |
| cd04934 | 73 | ACT_AK-Hom3_1 CT domains located C-terminal to the | 97.92 | |
| cd04911 | 76 | ACT_AKiii-YclM-BS_1 ACT domains located C-terminal | 97.89 | |
| cd04932 | 75 | ACT_AKiii-LysC-EC_1 ACT domains located C-terminal | 97.87 | |
| PRK06635 | 404 | aspartate kinase; Reviewed | 97.85 | |
| cd04924 | 66 | ACT_AK-Arch_2 ACT domains of a monofunctional aspa | 97.74 | |
| cd04936 | 63 | ACT_AKii-LysC-BS-like_2 ACT domains of the lysine- | 97.73 | |
| cd04923 | 63 | ACT_AK-LysC-DapG-like_2 ACT domains of the lysine- | 97.71 | |
| cd04915 | 66 | ACT_AK-Ectoine_2 ACT domains located C-terminal to | 97.71 | |
| cd04918 | 65 | ACT_AK1-AT_2 ACT domains located C-terminal to the | 97.71 | |
| cd04935 | 75 | ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AK | 97.68 | |
| cd04916 | 66 | ACT_AKiii-YclM-BS_2 ACT domains located C-terminal | 97.67 | |
| TIGR00657 | 441 | asp_kinases aspartate kinase. The Lys-sensitive en | 97.66 | |
| cd04868 | 60 | ACT_AK-like ACT domains C-terminal to the catalyti | 97.57 | |
| cd04920 | 63 | ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AK | 97.56 | |
| cd04892 | 65 | ACT_AK-like_2 ACT domains C-terminal to the cataly | 97.41 | |
| PRK09181 | 475 | aspartate kinase; Validated | 97.35 | |
| cd04921 | 80 | ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunc | 97.29 | |
| PRK09034 | 454 | aspartate kinase; Reviewed | 97.25 | |
| cd04917 | 64 | ACT_AKiii-LysC-EC_2 ACT domains located C-terminal | 97.17 | |
| PLN02551 | 521 | aspartokinase | 97.16 | |
| cd04910 | 71 | ACT_AK-Ectoine_1 ACT domains located C-terminal to | 97.12 | |
| cd04914 | 67 | ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela | 97.08 | |
| cd04914 | 67 | ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela | 97.04 | |
| PRK09466 | 810 | metL bifunctional aspartate kinase II/homoserine d | 97.01 | |
| PRK09084 | 448 | aspartate kinase III; Validated | 96.94 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 96.9 | |
| PRK05925 | 440 | aspartate kinase; Provisional | 96.88 | |
| PRK08210 | 403 | aspartate kinase I; Reviewed | 96.76 | |
| cd04891 | 61 | ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- | 96.64 | |
| PRK08961 | 861 | bifunctional aspartate kinase/diaminopimelate deca | 96.63 | |
| KOG2436 | 520 | consensus Acetylglutamate kinase/acetylglutamate s | 96.62 | |
| PRK08841 | 392 | aspartate kinase; Validated | 96.53 | |
| cd04910 | 71 | ACT_AK-Ectoine_1 ACT domains located C-terminal to | 96.33 | |
| COG3603 | 128 | Uncharacterized conserved protein [Function unknow | 96.24 | |
| cd04913 | 75 | ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- | 96.2 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 95.96 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 95.2 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 94.52 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 94.26 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 93.92 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 93.1 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 92.45 | |
| cd04911 | 76 | ACT_AKiii-YclM-BS_1 ACT domains located C-terminal | 92.33 | |
| KOG0456 | 559 | consensus Aspartate kinase [Amino acid transport a | 92.11 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 91.68 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 90.83 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 90.41 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 90.02 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 88.63 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 88.21 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 88.01 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 87.67 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 87.54 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 87.06 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 86.26 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 86.08 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 85.85 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 85.17 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 83.85 | |
| COG4492 | 150 | PheB ACT domain-containing protein [General functi | 83.79 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 82.46 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 82.37 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 81.61 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 80.84 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 80.48 |
| >KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-112 Score=857.18 Aligned_cols=550 Identities=70% Similarity=0.998 Sum_probs=519.8
Q ss_pred Cccccccccccccccccc---ccccccccccccccccccceecccCCCcccceeEeeecccceeeeccccccccccccCC
Q 008693 2 ANTMQFSSIIQKNSLHCQ---ALSWQRFAFAKCVSSSSRLCVSVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESE 78 (557)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (557)
++++|++|+.+++..-.+ +..+++.+|+.-.+++.+.++ .++||++ ++|++|+..++...+++.+++...++ +
T Consensus 1 ~a~~~~~~~~~~~l~l~~~r~~~~~~~~~f~~~~~~~~~~~~--~~s~~~i-~~~~~~~~~r~~l~~~k~~e~~~s~g-~ 76 (559)
T KOG0456|consen 1 MASTQVYGVKTPRLALTSKRLEFSSKGVDFSTLKKSSLPIGR--GSSCRNI-SLRVSCEAVRVVLLERKNPETDPSNG-E 76 (559)
T ss_pred CCceeEEeecCCCcccccccccccccCccchhhccccccccC--Cccceec-eeeeeeeeeeEeeecccCcccCccCC-C
Confidence 468999999776555332 556778888887777765555 5667777 89999999999999999999866666 8
Q ss_pred CcceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+..|+|+|||||||++++++..++..+..+++++++||+|||+++||.|+..++++..|+..+.+.+++++.|++.|++.
T Consensus 77 k~~~~V~KFGGsSV~s~~~~i~v~~l~~~~~~e~~~vV~SA~sk~Tna~~ta~~~~~~c~va~~~sie~l~iIke~Hi~t 156 (559)
T KOG0456|consen 77 KGLTCVMKFGGSSVGSAERMIEVAVLILYFPDERPVVVLSAMSKTTNALLTAGEKAVCCGVANVESIEELSIIKELHIRT 156 (559)
T ss_pred cceEEEEecCCccccccchhhhhhHHHHhcCCCCeEEEEEccccchhhhhhhhhheecccccCcchHHHHHHHHHHHHhh
Confidence 88999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
+++|++++..+.++++.|+++|+|+++++|.++|++|+++||||++|+++|++||+..|+++..+|..++++++.++|.+
T Consensus 157 a~e~~~d~~v~~~~le~leq~Lk~i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~ 236 (559)
T KOG0456|consen 157 AHELIVDPAVIAKLLEGLEQLLKGIAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTN 236 (559)
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCC
Q 008693 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (557)
Q Consensus 239 a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~ 318 (557)
+++.+.+++.+.+.+...|...+.|||++||.|..++.|..+++||||||++|+.||.+||++++++|+|||||+|+|||
T Consensus 237 ~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~ 316 (559)
T KOG0456|consen 237 DDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPR 316 (559)
T ss_pred hhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCc
Confidence 99999999888888888888888999999999988889999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeeccEEEE
Q 008693 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML 398 (557)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~nialI 398 (557)
++|.|+++|.+|++||.||+|||++|+||-+|+|+++.+|||||+|++||.+|||.|.+++++.+...|+|+.++|++++
T Consensus 317 ~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~~~GTvI~~d~~m~k~~~TsI~lK~nv~ml 396 (559)
T KOG0456|consen 317 IYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPTAPGTVITPDRDMSKAGLTSIVLKRNVTML 396 (559)
T ss_pred cCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCCCCceEeccchhhhhccceEEEEeccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred EEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEE
Q 008693 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIIS 478 (557)
Q Consensus 399 tI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIs 478 (557)
+|.+++|+++.||++++|.+|+++||+||.+++||.+||++++++++|++++++.++++..++|++++.+++.++.++||
T Consensus 397 dI~Str~l~q~GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~ki~~vdll~~~sIiS 476 (559)
T KOG0456|consen 397 DIASTRMLGQHGFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEKIAVVDLLKGRSIIS 476 (559)
T ss_pred EecccchhhhhhHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHHhhhhhhhccchHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC-ccccccccccCCCCCC
Q 008693 479 LIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES-DLANLDCVCGSENNSS 555 (557)
Q Consensus 479 IVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~-~~~~~~~~~~~~~~~~ 555 (557)
+||+|.+..+++.++|..|+++||||.|||||+|++|||++|+++++++|+++||++||++ +..|+..++...++.+
T Consensus 477 LiGnvq~ss~i~~rmF~~l~e~giNvqMISQGAskvNIS~ivne~ea~k~v~~lH~~~~e~~~~~e~~~q~~~~~~~~ 554 (559)
T KOG0456|consen 477 LIGNVQNSSGILERMFCVLAENGINVQMISQGASKVNISCIVNEKEAEKCVQALHKAFFETLDLHEVPSQASMGVEKP 554 (559)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCcceeeeccccccceEEEEEChHHHHHHHHHHHHHHcCCCCccccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999 8888888887776654
|
|
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-104 Score=861.45 Aligned_cols=499 Identities=84% Similarity=1.207 Sum_probs=452.5
Q ss_pred cccCCCcccceeEeeecccceeeeccccccccccccCCCcceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCC
Q 008693 41 SVRNSCGGRGGLRVSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAM 120 (557)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~ 120 (557)
+...++.+++.+++.|..+......+..++........+.+++|+|||||||+|+++|++|+++|....+.++|||||||
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVvSA~ 91 (521)
T PLN02551 12 RSVGSSCRNIVLRVNCSAGRVEALVEAPSETRQGGGTEKQLTVVMKFGGSSVASAERMREVADLILSFPDERPVVVLSAM 91 (521)
T ss_pred ccccccchhHHHHhhhhhhhhHhhhhcccccccccccccCceEEEEECCCccCCHHHHHHHHHHHHhcCCCCEEEEEcCC
Confidence 33444444457888887777665656666666666777788899999999999999999999999987666799999999
Q ss_pred CcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhh
Q 008693 121 GKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200 (557)
Q Consensus 121 gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~ 200 (557)
+|+||.|+++++.+..++..+.++...++.++++|.+++++|+.+...+..++++|+++++++.++++++++.+|+|+|+
T Consensus 92 ~~~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~~~L~~~~~~~~~~~~~l~~ll~~i~~~~~~~~~~~d~ils~ 171 (521)
T PLN02551 92 GKTTNNLLLAGEKAVSCGVTNVSEIEELSAIRELHLRTADELGVDESVVEKLLDELEQLLKGIAMMKELTPRTRDYLVSF 171 (521)
T ss_pred CCchHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhhhhcccchHHHHHHHhH
Confidence 99999999998888766544456777899999999999999998888899999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCcee
Q 008693 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAIT 280 (557)
Q Consensus 201 GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~t 280 (557)
||++|+.||+++|+++|+++.++|++++|++|+++|+++++.+.+++++.+.+...|.+.+.|||+|||+|.++++|++|
T Consensus 172 GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFig~~~~~G~~t 251 (521)
T PLN02551 172 GERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFLGKGWKTGAIT 251 (521)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCccccCCCCCcEE
Confidence 99999999999999999999999999999999999999998877888888877665555678999999999982379999
Q ss_pred ecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCE
Q 008693 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 360 (557)
Q Consensus 281 tlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv 360 (557)
|||||||||||+++|++|+|++|+||||||||||+|||++|+|+++++|||+||.||+|+||+||||+|++||++++|||
T Consensus 252 tLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi 331 (521)
T PLN02551 252 TLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPV 331 (521)
T ss_pred ecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCCCeeEecCCCCCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEe
Q 008693 361 RVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTL 440 (557)
Q Consensus 361 ~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I 440 (557)
+|+|+|+|+++||+|++..++++..||+|+.++|+++|++.+.+|++.+||++++|+.|+++||+|+|+++|+.+|+|++
T Consensus 332 ~vknt~~p~~~GT~I~~~~~~~~~~v~~It~~~~v~li~i~~~~m~~~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v 411 (521)
T PLN02551 332 RVKNSYNPTAPGTLITKTRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSISLTL 411 (521)
T ss_pred EEEecCCCCCCCcEEecccccCCCcccceecCCCeEEEEEecCCCCCcccHHHHHHHHHHHcCCcEEEEeccCCEEEEEE
Confidence 99999999999999988765555679999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEE
Q 008693 441 DPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIV 520 (557)
Q Consensus 441 ~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV 520 (557)
+.++.+..+.+++.++.++.+++++..+.+.+++++|++||+|+.++++++++|++|+++||||+||+||+|+++||++|
T Consensus 412 ~~~~~~~~~~i~~~l~~l~~el~~~~~V~v~~~vAiISvVG~~~~~~gvaariF~aLa~~gInV~mIsqgaSeinIS~vV 491 (521)
T PLN02551 412 DPSKLWSRELIQQELDHLVEELEKIAVVNLLQGRSIISLIGNVQRSSLILEKVFRVLRTNGVNVQMISQGASKVNISLIV 491 (521)
T ss_pred ehhHhhhhhhHHHHHHHHHHHhhcCCeEEEeCCEEEEEEEccCCCCccHHHHHHHHHHHCCCCeEEEEecCCCcEEEEEE
Confidence 99876554555566777777888777899999999999999987889999999999999999999999999999999999
Q ss_pred ecccHHHHHHHHHHHhccC
Q 008693 521 NDDEAEQCVRALHETFFES 539 (557)
Q Consensus 521 ~~~d~~kAv~~LH~~f~~~ 539 (557)
+++|.++|+++||++||..
T Consensus 492 ~~~d~~~Av~aLH~~Ff~~ 510 (521)
T PLN02551 492 NDDEAEQCVRALHSAFFEG 510 (521)
T ss_pred eHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999986
|
|
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-93 Score=760.66 Aligned_cols=439 Identities=38% Similarity=0.617 Sum_probs=381.7
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCCC--CccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~--~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|.|+|+|||||||+|+++|++++++|.+..+ .++|||+|||||+||.|+++++.+..... ... .++|.+
T Consensus 1 m~~iV~KFGGTSva~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~-----~~~----~~~~~~ 71 (447)
T COG0527 1 MRLIVQKFGGTSVADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRD-----AVA----EQRHRD 71 (447)
T ss_pred CceEEEEeCCcccCCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccc-----hhH----HHHHHH
Confidence 4589999999999999999999999998643 67899999999999999999876543221 111 566777
Q ss_pred HHHHhCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 158 TVDELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 158 ~~~~l~~~~~---~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
.+.++..+.. .+.....+++..+.++..+++.+++.+|+++|+||++|+.||+++|+++|++|.+++++++++++++
T Consensus 72 ~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~ 151 (447)
T COG0527 72 IASELILDPFIAARLAEVIAEFKKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDS 151 (447)
T ss_pred HHHHHhhcchhhhhHhhhHhhhhHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecC
Confidence 7777765442 2344444447788888999999999999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
.|+++.+....+.+. +. .+++.+.||||+||+|.+ ++|++||||||||||||++||++|+|++|+||||||||||
T Consensus 152 ~~~~a~i~~~~~~~~---l~-~~~~~~~v~Vv~GF~G~~-~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~T 226 (447)
T COG0527 152 NHGNARILDEDSERR---LL-RLLEEGKVPVVAGFQGIN-EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYT 226 (447)
T ss_pred cccccccchhhhhhh---HH-HHhcCCcEEEecCceeec-CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCcc
Confidence 999999876665541 22 235678999999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeecc
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN 394 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~n 394 (557)
+|||+||+|++|++|||+||+||+++|||||||+|++||++++||++|+|||+|+++||+|..........+++|+..++
T Consensus 227 aDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~~~~~v~gIa~~~~ 306 (447)
T COG0527 227 ADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAETESDEPVVKGIALDDN 306 (447)
T ss_pred CCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCCCCceEEecCCcCCCCceEEEEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999986544468999999999
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc--CceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeeccc
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQ 472 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS--e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~ 472 (557)
+++|++.+..|.+.+||++++|..|+++||++++|.++ +.+++|+++.++.... .+.+.....+.. ..+.+.+
T Consensus 307 ~~~i~v~~~~~~~~~g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a---~~~l~~~~~~~~--~~v~~~~ 381 (447)
T COG0527 307 VALITVSGPGMNGMVGFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRA---LRALLEEKLELL--AEVEVEE 381 (447)
T ss_pred eEEEEEEccCccccccHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHH---HHHHHHHHhhhc--ceEEeeC
Confidence 99999999999999999999999999999999999766 7889999998764321 122322222111 2688889
Q ss_pred ceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 473 HRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 473 ~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
++++|++||. |..++|+++++|++|++++|||.||+ +|+++|+|+|+++|.++|+++||++|+.+
T Consensus 382 ~~a~vsiVG~gm~~~~gvaa~~f~aL~~~~ini~~is--sSe~~Is~vV~~~~~~~av~~LH~~~~~~ 447 (447)
T COG0527 382 GLALVSIVGAGMRSNPGVAARIFQALAEENINIIMIS--SSEISISFVVDEKDAEKAVRALHEAFFLG 447 (447)
T ss_pred CeeEEEEEccccccCcCHHHHHHHHHHhCCCcEEEEE--cCCceEEEEEccHHHHHHHHHHHHHHhcC
Confidence 9999999997 88899999999999999999999999 59999999999999999999999999863
|
|
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-88 Score=732.56 Aligned_cols=440 Identities=36% Similarity=0.549 Sum_probs=391.9
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (557)
|+|+|||||||+|++++++|+++|.+. +.+++||||||||+||.|+++++.+..+ .++...++.++++|..++++
T Consensus 1 m~V~KFGGtSv~~~e~i~~v~~ii~~~-~~~~vvVVSA~~~~Td~L~~~~~~~~~~----~~~~~~~~~i~~~h~~~~~~ 75 (448)
T PRK09084 1 LVVAKFGGTSVADFDAMNRSADIVLSN-PNTRLVVLSASAGVTNLLVALAEGAEPG----DERLALLDEIRQIQYAILDR 75 (448)
T ss_pred CEEEEECccCcCCHHHHHHHHHHHhcC-CCCEEEEEcCCCCchHHHHHHHHHHHcC----ccHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999863 5678999999999999999998876532 35778899999999999999
Q ss_pred hCCCH---HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 162 LGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 162 l~~~~---~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
|..+. ..+.+.+++|+++++++.. +++++.+|+|+|+||++|+.+++++|+++|+++.++|++++ ++|+++|++
T Consensus 76 l~~~~~~~~~i~~~~~~l~~l~~~~~~--~~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~-i~t~~~~~~ 152 (448)
T PRK09084 76 LGDPNVVREEIERLLENITVLAEAASL--ATSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKV-MRTDDRFGR 152 (448)
T ss_pred hccchHHHHHHHHHHHHHHHHHHhhhh--cCChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHe-EEecCCCCc
Confidence 97654 3588899999999998866 77889999999999999999999999999999999999998 899999998
Q ss_pred ceeeecc-hHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCC
Q 008693 239 ADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (557)
Q Consensus 239 a~i~~~~-~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP 317 (557)
+++.... ...+.+.+.+ +++.+ |||++||+|.+ .+|.+||||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus 153 ~~~~~~~~~~~~~~~~~~-~~~~~-v~Vv~Gf~g~~-~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP 229 (448)
T PRK09084 153 AEPDVAALAELAQEQLLP-LLAEG-VVVTQGFIGSD-EKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDP 229 (448)
T ss_pred ccccHHHHHHHHHHHHHH-hhcCC-cEEecCeeecC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCC
Confidence 8874432 2333333433 34556 99999999998 5999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeeccEEE
Q 008693 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (557)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~nial 397 (557)
|++|+|+++++|||+||.||+++|++|+||+|+.|++++|||++|+|+++|+.+||+|.+... ....|++|+.++|+++
T Consensus 230 ~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~-~~~~v~~it~~~~i~l 308 (448)
T PRK09084 230 RIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE-NPPLFRAIALRRNQTL 308 (448)
T ss_pred CCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC-CCCeeEEEEeeCCEEE
Confidence 999999999999999999999999999999999999999999999999999999999987643 2347999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhh--HHHHHHHHHHHHHHHhhhheeeccccee
Q 008693 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWS--RELIQQELDHVVEELEKIAIVNLLQHRS 475 (557)
Q Consensus 398 ItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~--~~~~~~~l~~~~~~l~~~~~i~~~~~~a 475 (557)
|++.+.+|.+.+||++++|+.|+++||+|+|+++|+.+|+|+++.++... ...+ ..+++.+++.+..+.+.++++
T Consensus 309 Itv~~~~~~~~~g~~a~if~~l~~~~I~Vd~I~sse~sIs~~i~~~~~~~~~~~~~---~~~l~~el~~~~~i~~~~~va 385 (448)
T PRK09084 309 LTLHSLNMLHARGFLAEVFGILARHKISVDLITTSEVSVSLTLDTTGSTSTGDTLL---TQALLTELSQLCRVEVEEGLA 385 (448)
T ss_pred EEEecCCCCccccHHHHHHHHHHHcCCeEEEEeccCcEEEEEEechhhhhhhhHHH---HHHHHHHHhcCCeEEEECCeE
Confidence 99999999999999999999999999999999999999999999876321 1111 234455666667788889999
Q ss_pred EEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 476 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 476 iIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+|++||. |...+|+++|+|++|++ +||.||+||+|+++||++|+++|.++|+++||++||+
T Consensus 386 ~IsvvG~gm~~~~gv~arif~aL~~--~nI~~I~qgsSe~sIS~vV~~~d~~~al~~LH~~f~~ 447 (448)
T PRK09084 386 LVALIGNNLSKACGVAKRVFGVLEP--FNIRMICYGASSHNLCFLVPESDAEQVVQALHQNLFE 447 (448)
T ss_pred EEEEECCCcccCcChHHHHHHHHHh--CCeEEEEEcCCCCcEEEEEcHHHHHHHHHHHHHHHhc
Confidence 9999997 77899999999999985 6999999999999999999999999999999999985
|
|
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-88 Score=733.98 Aligned_cols=440 Identities=32% Similarity=0.482 Sum_probs=390.8
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCc-------CcHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg-------~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
|+|+|||||||+|++++++|+++|.+. .++++||||||+| +||.|+++++.+.+. .++...++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVVSA~~~~~~~~~~~Td~L~~~~~~~~~~----~~~~~~~~~~~~~ 75 (454)
T PRK09034 1 MKVVKFGGSSLASAEQFKKVLNIVKSD-PERKIVVVSAPGKRFKEDTKVTDLLILYAEAVLAG----EDYEDIFEAIIAR 75 (454)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHhcc-CCCEEEEEcCCcCCCCCccChHHHHHHHHHHHhcC----CcHHHHHHHHHHH
Confidence 689999999999999999999999864 4578999999986 999999988776542 3577789999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
|..++++|+.+.+.++++.++|+++...+ .+.+++.+|+|+|+||++|+.+|+++|+++|+++.++|++++|++|++
T Consensus 76 ~~~~~~~L~~~~~~~~~~~~~l~~l~~~~---~~~~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~ 152 (454)
T PRK09034 76 YAEIAKELGLDADILEKIEEILEHLANLA---SRNPDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTD 152 (454)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecC
Confidence 99999999888777777777777776543 467889999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
+|+++.+...++..+.+. ...+.|||+|||+|.+ .+|++||||||||||||+++|++|+|+++++|||||||||
T Consensus 153 ~~~~a~i~~~~~~~~~~~-----~~~~~v~Vv~GFig~~-~~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~t 226 (454)
T PRK09034 153 EPGNAQVLPESYDNLKKL-----RDRDEKLVIPGFFGVT-KDGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYA 226 (454)
T ss_pred CcCceeEcHhhHHHHHHH-----HhcCCEEEecCccccC-CCCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCc
Confidence 999998866665554432 2356799999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCC-cceeeEEeeec
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-KAVLTSIVLKR 393 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-~~~Vt~Is~~~ 393 (557)
+|||++|+|+++++|||+||.||+++|++||||+|++||+++|||++|+|+++|+++||+|....+.. +..|++|+.++
T Consensus 227 aDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~~~GT~I~~~~~~~~~~~Vk~It~~~ 306 (454)
T PRK09034 227 ANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPEDPGTLIVPDRDNKNKNPITGIAGDK 306 (454)
T ss_pred CCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCCCCccEEEeccccCccccceEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999998765332 24799999999
Q ss_pred cEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhh---hheeec
Q 008693 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEK---IAIVNL 470 (557)
Q Consensus 394 nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~---~~~i~~ 470 (557)
|+++|++.+.+|.+.+|+++++|+.|+++||+|+|+++|+.+++|+++.++.... .+..+++++++ ...+..
T Consensus 307 ~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~i~ss~~sis~~v~~~~~~~a-----~~~~l~~el~~~~~~~~I~~ 381 (454)
T PRK09034 307 GFTSIYISKYLMNREVGFGRKVLQILEDHGISYEHMPSGIDDLSIIIRERQLTPK-----KEDEILAEIKQELNPDELEI 381 (454)
T ss_pred CEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEEEcCCCcEEEEEEeHHHhhHH-----HHHHHHHHHHHhhCCceEEE
Confidence 9999999988899999999999999999999999999999999999998764321 01233344432 356888
Q ss_pred ccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008693 471 LQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540 (557)
Q Consensus 471 ~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 540 (557)
.+++++|+++|. |...+++++++|++|+++||||.||+|++|+.+|+|+|+++|.++|++.||++|+.++
T Consensus 382 ~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~~~av~~LH~~f~~~~ 452 (454)
T PRK09034 382 EHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQGSSEISIMFGVKNEDAEKAVKAIYNAFFKEV 452 (454)
T ss_pred eCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence 899999999997 7788999999999999999999999999999999999999999999999999999753
|
|
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-86 Score=723.67 Aligned_cols=450 Identities=39% Similarity=0.668 Sum_probs=402.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+++|+|||||||+|++++++|+++|.+. .+.++|||||||+|+||.|+++++.+... ...+++.+.++.++++|..+
T Consensus 1 ~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~ 79 (465)
T PRK06291 1 MRLVMKFGGTSVGDGERIRHVAKLVKRYRSEGNEVVVVVSAMTGVTDALLEIAEQALDV-RDIAKVKDFIADLRERHYKA 79 (465)
T ss_pred CcEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHHhc-cchhhHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999864 34688999999999999999988765331 11245788899999999999
Q ss_pred HHHhCCCH-------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 159 VDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 159 ~~~l~~~~-------~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
+++|..++ ..++..+++|+++++++..+++++++.+|+|+|+||++|+.||+++|+++|++++++++++++++
T Consensus 80 ~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~ 159 (465)
T PRK06291 80 IEEAIKDPDIREEVSKTIDSRIEELEKALVGVSYLGELTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGII 159 (465)
T ss_pred HHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEE
Confidence 99997543 24788899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
|+++|+++.+.+.++.++.+.+.. +++.+.|||++||+|.+ .+|.++||||||||++|+++|.+|+|+++++||||||
T Consensus 160 t~~~~~~~~~~~~~~~~~~~~~~~-ll~~~~vpVv~Gfig~~-~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~G 237 (465)
T PRK06291 160 TDSNFGNARPLPKTYERVKERLEP-LLKEGVIPVVTGFIGET-EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDG 237 (465)
T ss_pred ecCCCCceeechhhHHHHHHHHHH-HhhcCcEEEEeCcEEcC-CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCC
Confidence 999999888766677777766554 46788999999999998 5899999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEee
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVL 391 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~ 391 (557)
|||+||+++|+|+++++|||+||.+|+++|++++||+|+.||+++|||++|+|+++|+++||+|.+...+.+..|++|+.
T Consensus 238 i~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~~~~~V~~It~ 317 (465)
T PRK06291 238 VMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSESSKRVVKAVTL 317 (465)
T ss_pred CCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccccCcccceEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999998765444457999999
Q ss_pred eccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhh--hhe
Q 008693 392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEK--IAI 467 (557)
Q Consensus 392 ~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~--~~~ 467 (557)
++++++|++.+.+|.+.+|+++++|+.|+++||+|+|++ +|+.+++|+++.++... .+..+.+++.. ...
T Consensus 318 ~~~valIsI~g~~m~~~~g~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~------av~~L~~~~~~~~~~~ 391 (465)
T PRK06291 318 IKNVALINISGAGMVGVPGTAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEK------ALKALRREFGEGLVRD 391 (465)
T ss_pred eCCEEEEEEeCCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHH------HHHHHHHHHHHhcCcc
Confidence 999999999999999999999999999999999999998 57899999999876432 12222222322 456
Q ss_pred eecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 468 VNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 468 i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
+++.+++++|+++|. |...+|+++|+|++|+++||||+||+||+|+++|+|+|+++|.++|+++||++|+..
T Consensus 392 i~~~~~~a~IsvvG~gm~~~~gv~~rif~aL~~~~I~v~~isqgsSe~~Is~vV~~~d~~~av~~Lh~~f~~~ 464 (465)
T PRK06291 392 VTFDKDVCVVAVVGAGMAGTPGVAGRIFSALGESGINIKMISQGSSEVNISFVVDEEDGERAVKVLHDEFILG 464 (465)
T ss_pred eEEeCCEEEEEEEcCCccCCcChHHHHHHHHHHCCCCEEEEEeccccCeEEEEEeHHHHHHHHHHHHHHhccC
Confidence 888999999999997 788999999999999999999999999999999999999999999999999999753
|
|
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-85 Score=711.25 Aligned_cols=434 Identities=28% Similarity=0.378 Sum_probs=362.2
Q ss_pred cceEEEEecccccCCHHHHHHHHH-HHHcCC----CCccEEEEcCCCcCcHHHHHhhHHh-------hhcCCCcchhhHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAE-LILSFP----NERPVIVLSAMGKTTNKLLLAGEKA-------VSCGVTNISCIDE 147 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~-iI~~~~----~~~~vvVVSA~gg~Td~L~~~~~~a-------~~~~~~~~~~~~~ 147 (557)
|+.+|+||||||| +++++|.+ ++.... .++++||||||||+||.|+++++.+ ...+ ...++.+.
T Consensus 2 ~~~~V~KFGGtSv---~~~~~v~~~iv~~~~~~~~~~~~vVVVSA~g~~Td~L~~~~~~~~~~~~~~~~~~-~~~~~~~~ 77 (475)
T PRK09181 2 MMHTVEKIGGTSM---SAFDAVLDNIILRPRKGEDLYNRIFVVSAYGGVTDALLEHKKTGEPGVYALFAKA-NDEAWREA 77 (475)
T ss_pred CceEEEEECCCcH---HHHHHHHhheEeccccccCCCCeEEEEeCCCcchHHHHHhHhhcchhHHHHHHHh-cCccHHHH
Confidence 5579999999999 45666777 444321 2578999999999999999866411 1110 23467888
Q ss_pred HHHHHHHHHHHHHHhCCCH-------HH-------HHHHHHHHHHHHH-hhhhccCCCHHHHHHHHhhchHHHHHHHHHH
Q 008693 148 LSFVKDLHHRTVDELGIDR-------SI-------IATHLEELEQLLK-GIAMLKELTPRSRDYLVSFGECMSTRIFAAY 212 (557)
Q Consensus 148 l~~i~~~~~~~~~~l~~~~-------~~-------i~~~~~~l~~~l~-~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~ 212 (557)
++.++++|.+++++|..+. +. +.++|.++++++. ++.++++++++.+|+++|+||++|+.||+.+
T Consensus 78 l~~i~~~~~~i~~~L~~~~~~~~~~~~~i~~~~~~~~~~l~~l~~~l~~~~~~l~e~~~~~~D~l~s~GE~lSa~lla~~ 157 (475)
T PRK09181 78 LEAVEQRMLAINAELFADGLDLARADKFIRERIEEARACLIDLQRLCAYGHFSLDEHLLTVREMLASIGEAHSAFNTALL 157 (475)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhccChhHhHHHhhHhHHHHHHHHHHH
Confidence 9999999999999997421 12 3667777777777 8888999999999999999999999999999
Q ss_pred HHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHH
Q 008693 213 LNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTAT 292 (557)
Q Consensus 213 L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa 292 (557)
|+++|++|.++|+..+ ..++ ... ..+++.+.+.+ |...+.|||+|||++ + .+|++||||||||||||+
T Consensus 158 L~~~Gi~a~~ld~~~~--~~~~------~~~-~~~~i~~~l~~-~~~~~~v~Vv~GF~~-~-~~G~itTLGRGGSDyTAa 225 (475)
T PRK09181 158 LQNRGVNARFVDLTGW--DDDD------PLT-LDERIKKAFKD-IDVTKELPIVTGYAK-C-KEGLMRTFDRGYSEMTFS 225 (475)
T ss_pred HHhCCCCeEEeccccc--cCCc------ccc-hHHHHHHHHhh-hccCCcEEEecCCcC-C-CCCCEEecCCChHHHHHH
Confidence 9999999999887543 1111 111 23444444432 123567999999975 5 479999999999999999
Q ss_pred HHHHHcCcCcEEEeeCCCccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCC
Q 008693 293 TIGKALGLQEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA 370 (557)
Q Consensus 293 ~lA~~L~A~~l~i~TDVdGV~taDP~~v--~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~ 370 (557)
++|++|+|++|+|||||+ |||+|||+| |+|++|++|||+||.||+|+|||||||+|++||+++|||++|+|+|+|++
T Consensus 226 ilAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~~ 304 (475)
T PRK09181 226 RIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPEH 304 (475)
T ss_pred HHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCCC
Confidence 999999999999999997 999999999 69999999999999999999999999999999999999999999999999
Q ss_pred CCeeEecCCCCCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHH
Q 008693 371 PGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSREL 450 (557)
Q Consensus 371 ~GT~I~~~~~~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~ 450 (557)
+||+|.+...+....+++|+.++++++|++.+.+|.+.+||++++|+.|++++|+|+++++|+.++||+++.+ ..
T Consensus 305 ~GT~I~~~~~~~~~~ik~It~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~-~~---- 379 (475)
T PRK09181 305 PGTLITKDYVSEQPRVEIIAGSDKVFALEVFDQDMVGEDGYDLEILEILTRHKVSYISKATNANTITHYLWGS-LK---- 379 (475)
T ss_pred CCeEEecCcccccccceeEeccCCEEEEEEcCCCCCCcchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCC-hH----
Confidence 9999987543344568999999999999999999999999999999999999999999999999999999876 11
Q ss_pred HHHHHHHHHHHHhh---hheeecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHH
Q 008693 451 IQQELDHVVEELEK---IAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ 527 (557)
Q Consensus 451 ~~~~l~~~~~~l~~---~~~i~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~k 527 (557)
.+++++++|++ ...++. +++++|++||..+..+|+++|+|++|+++||||+||+||+|+++||++|+++|.++
T Consensus 380 ---~~~~~~~~L~~~~~~~~i~~-~~~a~VsvVG~gm~~~gv~ak~f~aL~~~~Ini~~i~qg~se~~Is~vV~~~d~~~ 455 (475)
T PRK09181 380 ---TLKRVIAELEKRYPNAEVTV-RKVAIVSAIGSNIAVPGVLAKAVQALAEAGINVLALHQSMRQVNMQFVVDEDDYEK 455 (475)
T ss_pred ---HHHHHHHHHHHhcCCceEEE-CCceEEEEeCCCCCcccHHHHHHHHHHHCCCCeEEEEecCCcceEEEEEeHHHHHH
Confidence 12223333432 234664 89999999997335899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 008693 528 CVRALHETFFES 539 (557)
Q Consensus 528 Av~~LH~~f~~~ 539 (557)
|+++||++||..
T Consensus 456 Av~~lH~~f~~~ 467 (475)
T PRK09181 456 AICALHEALVEN 467 (475)
T ss_pred HHHHHHHHHhcC
Confidence 999999999854
|
|
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-84 Score=691.50 Aligned_cols=436 Identities=26% Similarity=0.388 Sum_probs=377.7
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
|.|+|+|||||||+|++++++++++|... .+++||||||+|+||.|+++++.+. ......++.++++|..++
T Consensus 1 ~~~~V~KFGGtSv~~~e~i~~v~~ii~~~--~~~vVVvSA~~~~Td~L~~~~~~a~------~~~~~~~~~i~~~~~~~~ 72 (440)
T PRK05925 1 MAPLVYKFGGTSLGTAESIRRVCDIICKE--KPSFVVVSAVAGVTDLLEEFCRLSK------GKREALTEKIREKHEEIA 72 (440)
T ss_pred CCcEEEEECccccCCHHHHHHHHHHHhcC--CCEEEEECCCCCCHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999863 5689999999999999999877542 224457889999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
++|..+.. +.+++++|++++. .++++++.+|+++|+||++|+.||+++|+++|+++.++|++++ ++|+++|+++
T Consensus 73 ~~l~~~~~-~~~~~~~L~~~~~----~~~~~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~-i~t~~~~~~a 146 (440)
T PRK05925 73 KELGIEFS-LSPWWERLEHFED----VEEISSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQV-ILTDDQYLRA 146 (440)
T ss_pred HHhhcchh-hhHHHHHHHHHHH----hCcCCchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHh-EeecCCcccc
Confidence 99976432 4566677777664 4677889999999999999999999999999999999999998 8999999988
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
++. .+.+.+.+....++++.|||+|||+|.+ .+|+++|||||||||+|+++|.+|+|+++++|||||||||+|||+
T Consensus 147 ~~~---~~~~~~~~~~~~~~~~~v~Vv~GF~g~~-~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~ 222 (440)
T PRK05925 147 VPD---LALMQTAWHELALQEDAIYIMQGFIGAN-SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKI 222 (440)
T ss_pred ccC---HHHHHHHHHHhhccCCcEEEecCcceeC-CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCC
Confidence 873 2333444443334566899999999999 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCC--CCcceeeEEeeeccEEE
Q 008693 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNVTM 397 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~Vt~Is~~~nial 397 (557)
+|+|++|+++||+||.+|+++|++++||++++||+++|||++|+|+++|+++||+|.+..+ +....|++|+.++|+++
T Consensus 223 ~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~~~GT~i~~~~~~~~~~~~ik~It~~~~~~~ 302 (440)
T PRK05925 223 IKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVTKGGTWIYASDKEVSYEPRIKALSLKQNQAL 302 (440)
T ss_pred CCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCCCCccEEecCCccccCCCceEEEEEeCCEEE
Confidence 9999999999999999999999999999999999999999999999999999999987532 23446999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEE
Q 008693 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSII 477 (557)
Q Consensus 398 ItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiI 477 (557)
+++.+. ....++++++|+.|+++||+++++++++.+++|+++.++... ..+..+..+++.+..+++.+++++|
T Consensus 303 i~v~~~--~~~~~~~~~if~~l~~~~I~vd~i~s~~~sis~~i~~~~~~~-----~~~~~l~~~l~~~~~i~~~~~~a~V 375 (440)
T PRK05925 303 WSVDYN--SLGLVRLEDVLGILRSLGIVPGLVMAQNLGVYFTIDDDDISE-----EYPQHLTDALSAFGTVSCEGPLALI 375 (440)
T ss_pred EEEecC--CcchhHHHHHHHHHHHcCCcEEEEeccCCEEEEEEechhccH-----HHHHHHHHHhcCCceEEEECCEEEE
Confidence 999753 235788999999999999999999877899999999765321 1233444556666778889999999
Q ss_pred EEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCccc
Q 008693 478 SLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLA 542 (557)
Q Consensus 478 sIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~~~ 542 (557)
++||..+..+++++++|++|+++||||++++| |+.+|||+|+++|.++|+++||++||+++|+
T Consensus 376 svVG~gm~~~~v~~~~~~aL~~~~Ini~~i~~--s~~~is~vV~~~d~~~av~~LH~~f~~~~~~ 438 (440)
T PRK05925 376 TMIGAKLASWKVVRTFTEKLRGYQTPVFCWCQ--SDMALNLVVNEELAVAVTELLHNDYVKQKFS 438 (440)
T ss_pred EEeCCCcccccHHHHHHHHHhhCCCCEEEEEC--CCceEEEEEehHHHHHHHHHHHHHHhccccc
Confidence 99998333478999999999999999999998 6679999999999999999999999999886
|
|
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-82 Score=725.45 Aligned_cols=440 Identities=25% Similarity=0.362 Sum_probs=370.8
Q ss_pred CCCcceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 77 SEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 77 ~~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
..+|.|+|+|||||||+|++++++|+++|....+.+++||||||+|+||.|+++++.+.. ....+.+.++.++++|.
T Consensus 7 ~~~M~~~V~KFGGtSv~~~e~i~~v~~iI~~~~~~~~vVVVSA~~~~Td~L~~~~~~~~~---~~~~~~~~l~~i~~~h~ 83 (810)
T PRK09466 7 AGAMGRQLHKFGGSSLADAKCYRRVAGILAEYSQPDDLVVVSAAGKTTNQLISWLKLSQT---DRLSAHQVQQTLRRYQQ 83 (810)
T ss_pred cccceeEEEEECccccCCHHHHHHHHHHHhhhccCCEEEEEcCCCCCHHHHHHHHHHhhc---CchhHHHHHHHHHHHHH
Confidence 367889999999999999999999999998765556899999999999999998876522 12345677899999999
Q ss_pred HHHHHhCCCHH------HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 157 RTVDELGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 157 ~~~~~l~~~~~------~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
+++++|..+.. .+.+.+++|++++. ++++++.+|+|+|+||++|+.||+++|+++|+++.++|++++
T Consensus 84 ~~~~~L~~~~~~~~~~~~i~~~~~~l~~~l~-----~~~~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~-- 156 (810)
T PRK09466 84 DLIEGLLPAEQARSLLSRLISDLERLAALLD-----GGINDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSF-- 156 (810)
T ss_pred HHHHHhhcchhhhHHHHHHHHHHHHHHHHhh-----ccCCchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHh--
Confidence 99999976432 25566666666665 478889999999999999999999999999999999999995
Q ss_pred EEecCCCCceee-ecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 231 ITTDDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 231 it~~~~~~a~i~-~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
++++.+.++++. ..+.+.+.+.+.+ ..+.+||++||+|.+ .+|++||||||||||||+++|++|+|++|+|||||
T Consensus 157 i~~~~~~~~~i~~~~~~~~l~~~~~~---~~~~v~Vv~GF~g~~-~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV 232 (810)
T PRK09466 157 LRAERAAQPQVDEGLSYPLLQQLLAQ---HPGKRLVVTGFISRN-EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDV 232 (810)
T ss_pred eecCCCCCcccchhhhHHHHHHHHhc---cCCeEEEeeCccccC-CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCC
Confidence 555555556652 3344444443321 134799999999999 58999999999999999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEE
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSI 389 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~I 389 (557)
|||||+|||++|+|++|++|||+||.||+++|||||||+|++||+++|||++|+|+|+|+++||+|..... ....+++|
T Consensus 233 ~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~-~~~~v~~I 311 (810)
T PRK09466 233 AGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA-SGTGARIV 311 (810)
T ss_pred CccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc-cccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999986422 23358999
Q ss_pred eeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhe
Q 008693 390 VLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI 467 (557)
Q Consensus 390 s~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~ 467 (557)
+.++++++|++.+.++.+.+|+++++|+.|+++||+++++++ ++.+++|+++.++... +...++++.....
T Consensus 312 t~~~~v~~i~i~~~~~~g~~g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~-------~~~~l~~~~~~~~ 384 (810)
T PRK09466 312 TSLDDVCLIELQVPASHDFKLAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADS-------ALKLLDDAALPGE 384 (810)
T ss_pred eccCCEEEEEEecCCcCCcchHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHH-------HHHHHHhhcCCCc
Confidence 999999999999887788899999999999999999999963 4567899988553211 1122222223367
Q ss_pred eecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008693 468 VNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540 (557)
Q Consensus 468 i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 540 (557)
+++.+++++|++||. |.+.+|+++++|++|++++|++ ++|+.|+++||++|+++|.++|+++||++||...
T Consensus 385 i~v~~~~a~VsvVG~gm~~~~gv~~~~f~aL~~~~I~i--i~~~~s~~sis~vV~~~d~~~av~~LH~~f~~~~ 456 (810)
T PRK09466 385 LKLREGLALVALVGAGVTRNPLHCHRFYQQLKDQPVEF--IWQSEDGLSLVAVLRQGPTESLIQGLHQSLFRAE 456 (810)
T ss_pred EEEeCCeEEEEEeCCCcccCccHHHHHHHHHHhCCCcE--EEEeCCCcEEEEEEehHHHHHHHHHHHHHHhCcC
Confidence 888899999999997 7789999999999999987776 5555699999999999999999999999999763
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-81 Score=718.85 Aligned_cols=445 Identities=32% Similarity=0.511 Sum_probs=388.4
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
|+|+|||||||++++++++++++|.+.. .+++|||||||+|+||.|+++++.+.+. +..+...++.++++|. +++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vVVVSA~~~vTd~L~~~~~~~~~~---~~~~~~~~~~~~~~h~-~~~ 76 (819)
T PRK09436 1 MRVLKFGGTSVANAERFLRVADIIESNARQEQVAVVLSAPAKVTNHLVAMIEKAAKG---DDAYPEILDAERIFHE-LLD 76 (819)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhcccCCEEEEEcCCcCcHHHHHHHHHHHhcC---CchHHHHHHHHHHHHH-HHH
Confidence 6899999999999999999999998753 3678999999999999999998876542 2345667888888884 333
Q ss_pred Hh---CCC------HHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 161 EL---GID------RSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 161 ~l---~~~------~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
++ ... .+.+.+.|++|++++++++++++++++.+|+|+|+||++|+.||+++|+++|+++.++|++++ ++
T Consensus 77 ~l~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~ 155 (819)
T PRK09436 77 GLAAALPGFDLAQLKAKVDQEFAQLKDILHGISLLGECPDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPREL-LL 155 (819)
T ss_pred HHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHe-EE
Confidence 33 111 136888999999999999999999999999999999999999999999999999999999997 88
Q ss_pred EecCCCCceee-ecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 232 TTDDFTNADIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 232 t~~~~~~a~i~-~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
|++.|+++.+. +...+.+++.+ .+.+.|||+|||+|.+ .+|+++||||||||++|+++|.+|+|+++++|||||
T Consensus 156 t~~~~~~~~~~~~~~~~~i~~~~----~~~~~v~Vv~Gfig~~-~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVd 230 (819)
T PRK09436 156 ADGHYLESTVDIAESTRRIAASF----IPADHVILMPGFTAGN-EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVD 230 (819)
T ss_pred ecCCCCCceechHhhHHHHHHHH----hcCCcEEEecCcccCC-CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCC
Confidence 88888888773 33444444332 3457899999999998 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIV 390 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is 390 (557)
||||+|||++|+|++|++|||+||.+|+++|++++||+|+.||+++|||++|+|+++|+.+||+|+.+.++....|++|+
T Consensus 231 Gvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~~~~~~Vk~It 310 (819)
T PRK09436 231 GVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESDEDSLPVKGIS 310 (819)
T ss_pred ceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCCCCceEEEecCcccccccceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999876544445799999
Q ss_pred eeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchhhhHHHHHHHHHHHH-HHHh--hh
Q 008693 391 LKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQELDHVV-EELE--KI 465 (557)
Q Consensus 391 ~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~~~~~~~~~~l~~~~-~~l~--~~ 465 (557)
.++++++|++.+.+|.+.+|+++++|+.|+++||+++|++ +|+.+++|+++.++.... .+.+.+.+ .++. .+
T Consensus 311 ~~~dvalIsV~G~gm~~~~G~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~a---v~~L~~~f~~el~~~~~ 387 (819)
T PRK09436 311 NLNNMAMFNVSGPGMKGMVGMASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKA---KRALEEEFALELKEGLL 387 (819)
T ss_pred EeCCEEEEEEEcCCCCCCcCHHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHH---HHHHHHHHHHHhccCCc
Confidence 9999999999999999999999999999999999999998 568999999998764321 11222211 1222 24
Q ss_pred heeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 466 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 466 ~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
..+++.+++++|+++|. |...+++++|+|++|+++||||+||+||+|+++|||+|+++|.++|+++||++|+.+
T Consensus 388 ~~i~~~~~valIsvvG~gm~~~~gv~arif~aL~~~~InI~~IsqgsSe~~Is~vV~~~d~~~al~~LH~~f~~~ 462 (819)
T PRK09436 388 EPLEVEENLAIISVVGDGMRTHPGIAAKFFSALGRANINIVAIAQGSSERSISVVIDNDDATKALRACHQSFFLS 462 (819)
T ss_pred ceEEEeCCEEEEEEEccCcccCcCHHHHHHHHHHHCCCCEEEEEeccccceEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 56888899999999997 788999999999999999999999999999999999999999999999999999976
|
|
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-79 Score=711.57 Aligned_cols=451 Identities=27% Similarity=0.465 Sum_probs=390.2
Q ss_pred CCCcceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 77 SEKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 77 ~~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
+..|.|+|+|||||||+|++++++++++|.+. .+++++||||||+|+||+|+++++.+.+ .++.+.++.++++
T Consensus 4 ~~~~~~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~-----~~~~~~~~~i~~~ 78 (861)
T PRK08961 4 PSTDRWVVLKFGGTSVSRRHRWDTIAKIVRKRLAEGGRVLVVVSALSGVSNELEAIIAAAGA-----GDSASRVAAIRQR 78 (861)
T ss_pred CCCCCcEEEEECccccCCHHHHHHHHHHHHhhcccCCCEEEEEeCCCCchHHHHHHHHHHhc-----cCHHHHHHHHHHH
Confidence 45578999999999999999999999999864 2468899999999999999998765432 3567889999999
Q ss_pred HHHHHHHhCCCHH-HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEe
Q 008693 155 HHRTVDELGIDRS-IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (557)
Q Consensus 155 ~~~~~~~l~~~~~-~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (557)
|..++++|+.+.. .+.+.+++|+++++++..+++++++.+|+++|+||++|+.||+++|+++|+++.++|++++ ++++
T Consensus 79 ~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-~~~~ 157 (861)
T PRK08961 79 HRELLAELGVDAEAVLAERLAALQRLLDGIRALTRASLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREW-LTAL 157 (861)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhccCChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHh-Eeec
Confidence 9999999976543 6889999999999999999999999999999999999999999999999999999999998 5555
Q ss_pred cCC-C--Cceeeecch-HHHHHHHhhchhcCC-ceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeC
Q 008693 234 DDF-T--NADILEATY-PAVAKRLHGDWITDL-AIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (557)
Q Consensus 234 ~~~-~--~a~i~~~~~-~~v~~~l~~~ll~~~-~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TD 308 (557)
+++ . ......... ....+.+.+.+.+.+ .|||++||+|.+ .+|++|||||||||++|+++|.+|+|+++++|||
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~-~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~td 236 (861)
T PRK08961 158 PQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARN-ADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTD 236 (861)
T ss_pred CccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeC-CCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeC
Confidence 522 1 122211110 112222333333333 599999999999 5899999999999999999999999999999999
Q ss_pred CCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeE
Q 008693 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTS 388 (557)
Q Consensus 309 VdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~ 388 (557)
||||||+|||++|+|+++++|||+||.+|+++|++|+||+|++||+++|||++|+|+++|+.+||+|..+. +....|++
T Consensus 237 v~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~-~~~~~v~~ 315 (861)
T PRK08961 237 VPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPDLSGTSIDGDA-EPVPGVKA 315 (861)
T ss_pred CCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCC-CCCCccee
Confidence 99999999999999999999999999999999999999999999999999999999999999999998754 33457999
Q ss_pred EeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhee
Q 008693 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIV 468 (557)
Q Consensus 389 Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i 468 (557)
|+.++|+++|++.+.+|.+.+||++++|+.|+++||+|+||++|+.++||+++..+.... ++.++.+..++..+..+
T Consensus 316 It~~~~v~lItv~~~~~~~~~g~~a~if~~la~~~I~Vd~I~sse~sis~~i~~~~~~~~---~~~~~~l~~~l~~~~~i 392 (861)
T PRK08961 316 ISRKNGIVLVSMETIGMWQQVGFLADVFTLFKKHGLSVDLISSSETNVTVSLDPSENLVN---TDVLAALSADLSQICRV 392 (861)
T ss_pred EEEECCEEEEEEecCCccccccHHHHHHHHHHHcCCeEEEEEcCCCEEEEEEccccccch---HHHHHHHHHHHhhcCcE
Confidence 999999999999999999999999999999999999999999999999999998653210 12244455566666778
Q ss_pred ecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008693 469 NLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540 (557)
Q Consensus 469 ~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 540 (557)
.+.+++++||+||. |...+|+++++|++|++. +|.+++||+|+++||++|+++|.++|++.||++||..+
T Consensus 393 ~~~~~va~ISvVG~gm~~~~gv~arif~aL~~~--~I~~i~~gsSe~~Is~vV~~~d~~~av~~LH~~f~~~~ 463 (861)
T PRK08961 393 KIIVPCAAVSLVGRGMRSLLHKLGPAWATFGAE--RVHLISQASNDLNLTFVIDESDADGLLPRLHAELIESG 463 (861)
T ss_pred EEeCCeEEEEEeCCCcccCcChHHHHHHHHhhc--CeEEEECCCccccEEEEEeHHHHHHHHHHHHHHHhcCC
Confidence 88899999999997 788999999999999875 67889999999999999999999999999999999873
|
|
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-76 Score=639.71 Aligned_cols=434 Identities=36% Similarity=0.587 Sum_probs=370.5
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+|+|+|||||||+|++++++++++|.... +.+++||||||+|+||.|+++++.+... ...+.++.++++|.++
T Consensus 1 ~~~V~KFGGssv~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~-----~~~~~~~~i~~~~~~~ 75 (441)
T TIGR00657 1 ALIVQKFGGTSVGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPG-----PSKEFLEKIREKHIEI 75 (441)
T ss_pred CCEEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHH
Confidence 47899999999999999999999999742 4578999999999999999988766432 1256789999999999
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
+++|. +. ...+++++.++.+.. ...+++.+|+++|+||++|+.+++++|+++|++++++++.+.+++++++|++
T Consensus 76 ~~~l~-~~----~~~~~~~~~~~~~~~-~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~ 149 (441)
T TIGR00657 76 LERLI-PQ----AIAEELKRLLDAELV-LEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGR 149 (441)
T ss_pred HHHhh-hH----HHHHHHHHHHHHHHh-hhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCc
Confidence 99997 32 233334444433321 1224678899999999999999999999999999999999999999998887
Q ss_pred ce-eeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCC
Q 008693 239 AD-ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (557)
Q Consensus 239 a~-i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP 317 (557)
+. +.+.+.+.+. .+++.+.|||++||+|.+ .+|+++++||||||++|+++|.+|+|+++++||||||||++||
T Consensus 150 ~~~~~~~~~~~l~-----~~l~~~~vpVv~G~~g~~-~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP 223 (441)
T TIGR00657 150 ARVIIEILTERLE-----PLLEEGIIPVVAGFQGAT-EKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDP 223 (441)
T ss_pred eeecHhhhHHHHH-----HHHhcCCEEEEeCcEeeC-CCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 66 4344443332 245678899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCC-CCcceeeEEeeeccEE
Q 008693 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD-MSKAVLTSIVLKRNVT 396 (557)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~-~~~~~Vt~Is~~~nia 396 (557)
+++|+++++++|||+||.+|+++|++++||+|+.||++++||++|+|+++|+.+||+|.+..+ +.+..+++|+.+++++
T Consensus 224 ~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~~~~~~~i~~It~~~~v~ 303 (441)
T TIGR00657 224 RIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTKEMEEPIVKGLSLDRNQA 303 (441)
T ss_pred CCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCCCCceEEEeCCCccccCccceEEEeCCEE
Confidence 999999999999999999999999999999999999999999999999999999999987654 3445799999999999
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccce
Q 008693 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHR 474 (557)
Q Consensus 397 lItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~ 474 (557)
+|++.+.+|.+ +|+++++|+.|+++||++++++ +|+.+++|+++.++.... .+.+..+ .....+..+++.+++
T Consensus 304 ~Isv~g~~~~~-~g~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a---~~~L~~~-~~~~~~~~I~~~~~~ 378 (441)
T TIGR00657 304 RVTVSGLGMKG-PGFLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQA---KTLLKSE-LNLSALSSVEVEKGL 378 (441)
T ss_pred EEEEECCCCCC-ccHHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHH---HHHHHHH-HHhcCcceEEEcCCe
Confidence 99999988888 9999999999999999999997 568899999998764321 1112211 112234568889999
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
++|+++|. |.+.+++++++|++|+++||||.||++ |+.+|+|+|+++|.++|++.||++|++
T Consensus 379 a~VsvvG~~~~~~~g~~a~if~~La~~~Inv~~i~~--se~~Is~vV~~~d~~~a~~~Lh~~f~~ 441 (441)
T TIGR00657 379 AKVSLVGAGMKSAPGVASKIFEALAQNGINIEMISS--SEINISFVVDEKDAEKAVRLLHNALFE 441 (441)
T ss_pred EEEEEEcCCCCCCCchHHHHHHHHHHCCCCEEEEEe--cCCcEEEEEeHHHHHHHHHHHHHHhhC
Confidence 99999997 778899999999999999999999996 789999999999999999999999974
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-73 Score=607.10 Aligned_cols=378 Identities=30% Similarity=0.448 Sum_probs=329.9
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|.|+|+|||||||+|++++++++++|... .+.+++||||||+|+||.|+..+...
T Consensus 1 m~~~V~KfGGtsv~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~----------------------- 57 (392)
T PRK08841 1 MPLIVQKFGGTSVGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQV----------------------- 57 (392)
T ss_pred CCeEEEeECcccCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhh-----------------------
Confidence 56899999999999999999999999864 34678999999999999998753210
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
.+..+++.+|+++|+||++|+.|++++|+++|+++++++++|.++++++.+.
T Consensus 58 ----------------------------~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~ 109 (392)
T PRK08841 58 ----------------------------DSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHN 109 (392)
T ss_pred ----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCC
Confidence 0112566789999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP 317 (557)
++++...+...+.+ +++.+.|||++||+|.+ ++|+++|||||||||+|+++|.+|+|+++++|||||||||+||
T Consensus 110 ~~~i~~~~~~~i~~-----ll~~~~vpVv~Gf~g~~-~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP 183 (392)
T PRK08841 110 DATIKHIDTSTITE-----LLEQDQIVIVAGFQGRN-ENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDP 183 (392)
T ss_pred CceechhhHHHHHH-----HHhCCCEEEEeCCcccC-CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCC
Confidence 78776554443332 34677899999999999 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeeccEEE
Q 008693 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (557)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~nial 397 (557)
|++|+|+++++|||+||.||+++|++|+||+|++||+++|||++|+|+++| .+||+|.... ...+|++|+.++|+++
T Consensus 184 ~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~-~~GT~I~~~~--~~~~i~~i~~~~~~~~ 260 (392)
T PRK08841 184 RVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV-GEGTLIKGEA--GTQAVCGIALQRDLAL 260 (392)
T ss_pred CCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC-CCCeEEEecc--CCCcEEEEEEeCCeEE
Confidence 999999999999999999999999999999999999999999999999997 6799997642 3347999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEE
Q 008693 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSII 477 (557)
Q Consensus 398 ItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiI 477 (557)
|++.+ +.++++|+.|+++||+++++++++.+++|+++..++ +++...+ ...+...+++++|
T Consensus 261 i~v~~-------~~~~~i~~~l~~~~i~v~~i~~~~~~~~~~v~~~~~----------~~~~~~~--~~~i~~~~~~a~v 321 (392)
T PRK08841 261 IEVES-------ESLPSLTKQCQMLGIEVWNVIEEADRAQIVIKQDAC----------AKLKLVF--DDKIRNSESVSLL 321 (392)
T ss_pred EEecc-------chHHHHHHHHHHcCCCEEEEEecCCcEEEEECHHHH----------HHHHHhC--cccEEEeCCEEEE
Confidence 99975 246899999999999999999999999999986542 1111111 1246777899999
Q ss_pred EEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008693 478 SLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540 (557)
Q Consensus 478 sIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 540 (557)
++||.. .+|+++++|++|.+++||++++++ |+++|||+|+++|.++|+++||++|+..+
T Consensus 322 svVG~~--~~gv~~~~~~aL~~~~I~i~~i~~--s~~~is~vv~~~~~~~av~~lH~~f~~~~ 380 (392)
T PRK08841 322 TLVGLE--ANGMVEHACNLLAQNGIDVRQCST--EPQSSMLVLDPANVDRAANILHKTYVTSE 380 (392)
T ss_pred EEECCC--ChHHHHHHHHHHHhCCCCEEEEEC--CCcEEEEEEeHHHHHHHHHHHHHHHcCCc
Confidence 999973 389999999999999999999998 78999999999999999999999999874
|
|
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-72 Score=598.58 Aligned_cols=394 Identities=36% Similarity=0.582 Sum_probs=343.5
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+++|+|||||+|++++.+++++++|+.. .+.+++|||||++++||.|+++++...
T Consensus 1 ~~iViK~GGs~~~~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~----------------------- 57 (401)
T TIGR00656 1 ELIVQKFGGTSVGSGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAI----------------------- 57 (401)
T ss_pred CcEEEEECCcCcCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHh-----------------------
Confidence 4689999999999999999999999864 346889999999999999987643110
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
-...++..+|+++++||++|+.+++++|+++|+++.++++.+.+++|++++++
T Consensus 58 ---------------------------~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~ 110 (401)
T TIGR00656 58 ---------------------------RDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGN 110 (401)
T ss_pred ---------------------------ccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCc
Confidence 01235677899999999999999999999999999999999999999999988
Q ss_pred ceeeecch-HHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCC
Q 008693 239 ADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (557)
Q Consensus 239 a~i~~~~~-~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP 317 (557)
+++.+... +.+. .+++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|+++++|||||||||+||
T Consensus 111 ~~~~~~~~~~~l~-----~~l~~~~vpVi~g~~~~~-~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP 184 (401)
T TIGR00656 111 AKIDIIATEERLL-----PLLEEGIIVVVAGFQGAT-EKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDP 184 (401)
T ss_pred eEeeecchHHHHH-----HHHhCCCEEEecCcceeC-CCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCC
Confidence 87765554 3333 235678999999999998 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeeccEEE
Q 008693 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTM 397 (557)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~nial 397 (557)
+++|+|+++++|||+||.+|+++|++++||+|+.||++++||++|+|+++|+ +||+|.+..+ ..+.+++|+.++|+++
T Consensus 185 ~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~-~gT~I~~~~~-~~~~v~~I~~~~~va~ 262 (401)
T TIGR00656 185 RVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE-EGTLITNSME-NPPLVKGIALRKNVTR 262 (401)
T ss_pred CCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC-CCeEEEeCcc-cCCceEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999999999998 8999987532 2236999999999999
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeeccccee
Q 008693 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRS 475 (557)
Q Consensus 398 ItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~a 475 (557)
|++.+.+|.+.+|+++++|+.|++++|+++++++ |+.+++|+++.++... ..+.+.+..... ....+...++++
T Consensus 263 vsv~g~~~~~~~g~~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~---a~~~L~~~~~~~-~~~~i~~~~~~a 338 (401)
T TIGR00656 263 VTVHGLGMLGKRGFLARIFGALAERNINVDLISQTPSETSISLTVDETDADE---AVRALKDQSGAA-GLDRVEVEEGLA 338 (401)
T ss_pred EEEecCCCCCCccHHHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHH---HHHHHHHHHHhc-CCceEEEeCCeE
Confidence 9999999999999999999999999999999998 7899999998765321 111222221111 134577889999
Q ss_pred EEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 476 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 476 iIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+|++||. |.+.+|+++++|++|+++||||.+++ +|+.+++|+|+++|.++|+++||++||.
T Consensus 339 ~IsvVG~~~~~~~g~~a~i~~~L~~~gIni~~i~--~s~~~is~vv~~~d~~~av~~Lh~~f~~ 400 (401)
T TIGR00656 339 KVSIVGAGMVGAPGVASEIFSALEEKNINILMIG--SSETNISFLVDEKDAEKAVRKLHEVFEE 400 (401)
T ss_pred EEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEeHHHHHHHHHHHHHHHcc
Confidence 9999997 78899999999999999999999987 5899999999999999999999999985
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-68 Score=571.82 Aligned_cols=388 Identities=31% Similarity=0.518 Sum_probs=333.4
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCc-----CcHHHHHhhHHhhhcCCCcchhhHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGK-----TTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg-----~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~ 152 (557)
|.++|+|||||++.|++.++++++.|... .+.+++|||||||+ +|+.|+..+...
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~------------------ 62 (403)
T PRK08210 1 MKIIVQKFGGTSVSTEERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEE------------------ 62 (403)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHh------------------
Confidence 56899999999999999999999998863 24578999999976 588776542210
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEE
Q 008693 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (557)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (557)
....+++.+|.++++||.+|+.+++++|+++|+++.++++.+.+++|
T Consensus 63 ---------------------------------~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t 109 (403)
T PRK08210 63 ---------------------------------FSEISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIIT 109 (403)
T ss_pred ---------------------------------ccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEc
Confidence 01235667888999999999999999999999999999999988999
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcc
Q 008693 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (557)
Q Consensus 233 ~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV 312 (557)
+++++++++...+.+.+.. +++.+.|||++||+|.+ .+|+++|+||||||++|+++|.+|+|+++++|||||||
T Consensus 110 ~~~~~~~~v~~~~~~~l~~-----~l~~~~vpVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV 183 (403)
T PRK08210 110 DDNFTNAKIIEVNPDRILE-----ALEEGDVVVVAGFQGVT-ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGI 183 (403)
T ss_pred cCCCCceeeehhhHHHHHH-----HHhcCCEEEeeCeeecC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCC
Confidence 9988877775555443332 34678899999999988 58999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCC------CCccee
Q 008693 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD------MSKAVL 386 (557)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~------~~~~~V 386 (557)
|++|||++|++++|++|||+||.+|+++|++|+||+|++||+++|||++|+|+++| .+||+|.+..+ +....|
T Consensus 184 ~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~-~~gT~I~~~~~~~~~~~~~~~~v 262 (403)
T PRK08210 184 MTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD-SPGTLITSLGDAKGGIDVEERLI 262 (403)
T ss_pred CcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCC-cCCcEEEecCccccccccccCce
Confidence 99999999999999999999999999999999999999999999999999999985 46999987642 134579
Q ss_pred eEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh
Q 008693 387 TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIA 466 (557)
Q Consensus 387 t~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~ 466 (557)
++|+.++|+++|++.+..+ .+|+++++|+.|+++||+|++++++..+++|+++.++... +..+++++. .
T Consensus 263 ~~It~~~~i~~isv~~~~~--~~g~la~If~~L~~~~I~i~~i~~~~~~is~~v~~~~~~~-------a~~~l~~~~--~ 331 (403)
T PRK08210 263 TGIAHVSNVTQIKVKAKEN--AYDLQQEVFKALAEAGISVDFINIFPTEVVFTVSDEDSEK-------AKEILENLG--L 331 (403)
T ss_pred EEEEEcCCcEEEEEecCCC--cchHHHHHHHHHHHcCCeEEEEEecCceEEEEEcHHHHHH-------HHHHHHHhC--C
Confidence 9999999999999986543 4999999999999999999999988889999998755321 122223322 1
Q ss_pred eeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 467 IVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 467 ~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
.+.+.+++++|+++|. |.+.+|+++++|++|+++||||.++++ |+++++|+|+++|.++|+++||++|+.
T Consensus 332 ~v~~~~~~a~isvvG~~~~~~~g~~~~i~~aL~~~~I~i~~~~~--s~~~is~vv~~~~~~~a~~~Lh~~f~~ 402 (403)
T PRK08210 332 KPSVRENCAKVSIVGAGMAGVPGVMAKIVTALSEEGIEILQSAD--SHTTIWVLVKEEDMEKAVNALHDAFEL 402 (403)
T ss_pred cEEEeCCcEEEEEEcCCcCCCccHHHHHHHHHHhCCCCEEEEec--CCCEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 4777889999999997 788999999999999999999988766 899999999999999999999999964
|
|
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-68 Score=591.76 Aligned_cols=395 Identities=30% Similarity=0.482 Sum_probs=341.3
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|.|+|+|||||||+|++.+++++++|.... +.+++||+||||++||+|++++...
T Consensus 1 m~~iViKfGGss~~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~----------------------- 57 (587)
T PRK07431 1 MALIVQKFGGTSVGSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEI----------------------- 57 (587)
T ss_pred CCeEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHh-----------------------
Confidence 568999999999999999999999998642 4678999999999999997643210
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
.++.+.+.+|+++++||.+|+.+++.+|+++|+++++++++++++++++.++
T Consensus 58 ----------------------------t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~ 109 (587)
T PRK07431 58 ----------------------------SSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHG 109 (587)
T ss_pred ----------------------------ccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCC
Confidence 1233566789999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccC-CCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~-~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taD 316 (557)
.+++...+.+.+.+ +++.+.|||++||+|.+. .+|+++|+||||||++|+++|.+|+|+++++||||||||++|
T Consensus 110 ~~~i~~~~~~~l~~-----~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~D 184 (587)
T PRK07431 110 RARILEIKTDRIQR-----HLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTD 184 (587)
T ss_pred ceeeeeccHHHHHH-----HHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCC
Confidence 78877666654443 346789999999999752 238899999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCC--------cceeeE
Q 008693 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS--------KAVLTS 388 (557)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~--------~~~Vt~ 388 (557)
|+++|+|++|++|+|+||.+|+++|+++|||+|++|++++|||++|+|++ |+.+||+|.+..+.. ..++++
T Consensus 185 P~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~-~~~~GT~i~~~~~~~~~~~~~~~~~~i~g 263 (587)
T PRK07431 185 PRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSW-SDAPGTLVTSPPPRPRSLGGLELGKPVDG 263 (587)
T ss_pred CCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCC-CCCCCeEEEeCCcccccccchhcccccce
Confidence 99999999999999999999999999999999999999999999999999 467899998764321 346899
Q ss_pred EeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-----CceeEEEeCCchhhhHHHHHHHHHHHHHHHh
Q 008693 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQELDHVVEELE 463 (557)
Q Consensus 389 Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-----e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~ 463 (557)
++..++++++++. ++.+.+||++++|+.|+++||+|+|++++ ..+++|+++.++.... .+.++.+..++.
T Consensus 264 i~~~~~~a~itl~--~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~~~~---~~~l~~l~~~~~ 338 (587)
T PRK07431 264 VELDEDQAKVALL--RVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENELKKA---EAVAEAIAPALG 338 (587)
T ss_pred EEEecCceEEEEe--cCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHHHHH---HHHHHHHHHHcC
Confidence 9999999999996 57889999999999999999999999853 2789999988764321 122333333333
Q ss_pred hhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 464 KIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 464 ~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
. ..+++.+++++|+++|. |...+|+++|+|++|++++|||++|+ +|+++|||+|+++|.++|++.||++|+.+
T Consensus 339 ~-~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~--sSe~~Is~vv~~~d~~~av~~Lh~~f~~~ 412 (587)
T PRK07431 339 G-AEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMIS--TSEVKVSCVIDAEDGDKALRAVCEAFELE 412 (587)
T ss_pred C-CcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEE--cCCCEEEEEEcHHHHHHHHHHHHHHhccC
Confidence 2 56888899999999997 78899999999999999999999999 49999999999999999999999999766
|
|
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-67 Score=559.71 Aligned_cols=393 Identities=33% Similarity=0.540 Sum_probs=341.1
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|+++|+|||||++.|++.++++++.|.... +.+++|||||++++||+|++..+...
T Consensus 1 m~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~---------------------- 58 (404)
T PRK06635 1 MALIVQKFGGTSVGDVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVS---------------------- 58 (404)
T ss_pred CCeEEEeECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhc----------------------
Confidence 568999999999999999999999998642 46789999999999999987532100
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
...++..+|+++++||++|+.+++.+|+++|++++++++++++++++++|+
T Consensus 59 -----------------------------~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~ 109 (404)
T PRK06635 59 -----------------------------PLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHG 109 (404)
T ss_pred -----------------------------cCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCC
Confidence 012456778999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP 317 (557)
++++...+.+.+.+ +++.+.|||++||+|.+ .+|.++|+||||||++|+++|.+|+|+++++||||||||++||
T Consensus 110 ~~~~~~~~~~~l~~-----~l~~~~ipVi~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP 183 (404)
T PRK06635 110 KARITDIDPSRIRE-----ALDEGDVVVVAGFQGVD-EDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDP 183 (404)
T ss_pred ceEeeecCHHHHHH-----HHhCCCEEEecCccEeC-CCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCC
Confidence 88876666554443 34578999999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCC--CCcceeeEEeeeccE
Q 008693 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--MSKAVLTSIVLKRNV 395 (557)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--~~~~~Vt~Is~~~ni 395 (557)
|++|++++++++||+|+.+|+++|++++||+|++|+++++||++|+|+++| .+||+|..... +.+..+++|+..+++
T Consensus 184 ~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~-~~gT~i~~~~~~~~~~~~i~~I~~~~~v 262 (404)
T PRK06635 184 RIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD-NPGTLITGEEEEIMEQPVVTGIAFDKDE 262 (404)
T ss_pred CCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC-CCCCEEeeCCccccccCceEEEEecCCe
Confidence 999999999999999999999999999999999999999999999999988 68999987643 344579999999999
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-----CceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeec
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNL 470 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-----e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~ 470 (557)
++|++.+ |.+.+|+++++|+.|+++||++++++++ +.+++|+++.++... ..+.+++...++ .+..++.
T Consensus 263 ~~Isv~g--~~~~~g~l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~---a~~~L~~~~~~~-~~~~i~~ 336 (404)
T PRK06635 263 AKVTVVG--VPDKPGIAAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEK---ALELLEEVKDEI-GAESVTY 336 (404)
T ss_pred EEEEECC--CCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHH---HHHHHHHHHHHc-CcceEEE
Confidence 9999987 8889999999999999999999999886 477999998765422 112233211111 2355888
Q ss_pred ccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 471 LQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 471 ~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
.+++++|+++|. +...+|+++++|++|+++||||.++++ |+.+++|+|+++|.++|++.||++|+.
T Consensus 337 ~~~ia~isvvG~~~~~~~g~~a~i~~~La~~~Ini~~i~s--s~~~is~vv~~~d~~~a~~~Lh~~f~~ 403 (404)
T PRK06635 337 DDDIAKVSVVGVGMRSHPGVAAKMFEALAEEGINIQMIST--SEIKISVLIDEKYLELAVRALHEAFGL 403 (404)
T ss_pred cCCeEEEEEECCCCCCCchHHHHHHHHHHHCCCCEEEEEe--cCCeEEEEEcHHHHHHHHHHHHHHHCC
Confidence 899999999996 788899999999999999999999986 789999999999999999999999953
|
|
| >cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-66 Score=528.10 Aligned_cols=281 Identities=35% Similarity=0.514 Sum_probs=249.8
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCC-------cCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMG-------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~g-------g~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
|+|+|||||||+|++++++|+++|... .++++||||||+ |+||.|+++++.+.+. .++.+.++.++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vvVvSA~~~~~~~~~~vTd~L~~~~~~~~~~----~~~~~~~~~i~~~ 75 (288)
T cd04245 1 MKVVKFGGSSLASAEQFQKVKAIVKAD-PERKIVVVSAPGKRFKDDTKVTDLLILYAEAVLAG----EDTESIFEAIVDR 75 (288)
T ss_pred CEEEEECcCccCCHHHHHHHHHHHHhc-CCCEEEEEcCCCCCCCchhhHHHHHHHHHHHHhcC----cchHHHHHHHHHH
Confidence 589999999999999999999999865 467899999998 5999999988766441 2456789999999
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
|.+++++|..+.+.+.+..+.++++.+. +...+++.+|+|+|+||++|+.+|+.+|+++|+++.++|++++|++|++
T Consensus 76 h~~~~~~L~~~~~~~~~i~~~~~~l~~~---~~~~~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~ 152 (288)
T cd04245 76 YAEIADELGLPMSILEEIAEILENLANL---DYANPDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTD 152 (288)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHHHHh---hccCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecC
Confidence 9999999987766555555555555442 2356789999999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
+|+++++...+.+++.+.+ +.+.|||++||+|.+ .+|++||||||||||||+++|.+|+|+++++|||||||||
T Consensus 153 ~~~~a~~~~~~~~~~~~~~-----~~~~v~Vv~Gf~g~~-~~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvyt 226 (288)
T cd04245 153 EPGNAQILPESYQKIKKLR-----DSDEKLVIPGFYGYS-KNGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYA 226 (288)
T ss_pred CccccccchhhHHHHHHHH-----hCCCEEEEeCccccC-CCCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceEC
Confidence 9999888666665554433 457899999999999 5899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
+|||++|+|+++++|||+||.||+++|++||||+|+.||+++||||+|+|+++|+++||+|.
T Consensus 227 aDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~~~GT~I~ 288 (288)
T cd04245 227 ANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPEAPGTLIV 288 (288)
T ss_pred CCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999999999999999999984
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine. |
| >cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-66 Score=527.72 Aligned_cols=288 Identities=39% Similarity=0.559 Sum_probs=259.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (557)
|+|+|||||||+|++++++++++|... ++++|||||||+|+||.|+++++.+..+.. ..+...++.++++|.+++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~~vTd~L~~~~~~~~~~~~--~~~~~~l~~l~~~h~~~~~~ 77 (292)
T cd04258 1 MVVAKFGGTSVADYAAMLRCAAIVKSD-ASVRLVVVSASAGVTNLLVALADAAESGEE--IESIPQLHEIRAIHFAILNR 77 (292)
T ss_pred CEEEEECccccCCHHHHHHHHHHHhcc-CCCEEEEEeCCCCchHHHHHHHHHHhcCCc--chhhHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999875 567899999999999999999887654321 23455799999999999999
Q ss_pred hCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 162 LGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 162 l~~~~~---~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
|..+.+ .+...+++|+++++++.++++++++.+|+|+|+||++|+.+|+++|+++|+++.++|++++ ++|+++|++
T Consensus 78 L~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~~~~ 156 (292)
T cd04258 78 LGAPEELRAKLEELLEELTQLAEGAALLGELSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTV-LRTDSRFGR 156 (292)
T ss_pred hhcchhHHHHHHHHHHHHHHHHhhhccccccChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHe-EEecCCCcc
Confidence 987654 5888999999999999999999999999999999999999999999999999999999998 889999998
Q ss_pred ceeeecc-hHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCC
Q 008693 239 ADILEAT-YPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (557)
Q Consensus 239 a~i~~~~-~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP 317 (557)
+++.... .+.+.+.+. .+ .++.|||+|||+|.+ .+|++|||||||||++|+++|.+|+|+++++|||||||||+||
T Consensus 157 a~~~~~~~~~~~~~~~~-~~-~~~~v~Vv~Gf~g~~-~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP 233 (292)
T cd04258 157 AAPDLNALAELAAKLLK-PL-LAGTVVVTQGFIGST-EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDP 233 (292)
T ss_pred ccccHHHHHHHHHHHHH-Hh-hcCCEEEECCccccC-CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCC
Confidence 8875433 333443333 22 355899999999998 5899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
+++|+|+++++|||+||.||+++|++|+||+|+.|+++++|||+|+|+++|+++||+|+
T Consensus 234 ~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~~~GT~I~ 292 (292)
T cd04258 234 RICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPEAGGTLIT 292 (292)
T ss_pred CCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCCCCCceeC
Confidence 99999999999999999999999999999999999999999999999999999999995
|
AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits. |
| >cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=527.66 Aligned_cols=290 Identities=55% Similarity=0.830 Sum_probs=265.2
Q ss_pred EEEEecccccCCHHHHHHHHHHHHcC-CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 008693 83 CVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (557)
Q Consensus 83 ~V~KFGGsSv~~~~~~~~va~iI~~~-~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (557)
+|+|||||||+|++++++++++|.+. .+++++||||||+|+||.|+++++.+.... ..++...++.++++|.+++++
T Consensus 2 ~V~KFGGtSv~~~~~~~~v~~iI~~~~~~~~~vvVvSA~~~iTd~L~~~~~~~~~~~--~~~~~~~l~~i~~~h~~~~~~ 79 (298)
T cd04244 2 LVMKFGGTSVGSAERIRHVADLVGTYAEGHEVVVVVSAMGGVTDRLLLAAEAAVSGR--IAGVKDFIEILRLRHIKAAKE 79 (298)
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHhhcCCCEEEEEeCCCCcHHHHHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHH
Confidence 69999999999999999999999974 346889999999999999999887664321 235677899999999999999
Q ss_pred hCCCH------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC
Q 008693 162 LGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (557)
Q Consensus 162 l~~~~------~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (557)
|..+. +.+++++++|+++++++..+++++++.+|+|+|+||++|+.||+++|+++|++++++++++++++|+++
T Consensus 80 l~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~ 159 (298)
T cd04244 80 AISDEEIAEVESIIDSLLEELEKLLYGIAYLGELTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDN 159 (298)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCc
Confidence 98653 468899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 236 ~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
++++.+...+..++++.+.. +++.+.|||++||+|.+ .+|+++||||||||++|+++|.+|+|+++++||||||||++
T Consensus 160 ~~~a~~~~~~~~~i~~~l~~-ll~~~~vpVv~Gfig~~-~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~ 237 (298)
T cd04244 160 FGNARPLPATYERVRKRLLP-MLEDGKIPVVTGFIGAT-EDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTA 237 (298)
T ss_pred ccccccchhHHHHHHHHHHH-HhhcCCEEEEeCccccC-CCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCC
Confidence 88877665566777776653 46778999999999998 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
||+++|+|+++++|||+||.+|+++|++|+||+|+.||+++|||++|+|+++|+++||+|+
T Consensus 238 dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~~~GT~I~ 298 (298)
T cd04244 238 DPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPEAPGTLIT 298 (298)
T ss_pred CCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCCCCCCEeC
Confidence 9999999999999999999999999999999999999999999999999999999999995
|
The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. |
| >cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-65 Score=520.66 Aligned_cols=286 Identities=39% Similarity=0.619 Sum_probs=258.3
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
|+|+|||||||+|++++++++++|.... +.+++||||||+|+||.|+++++.+.+. +..+...++.++++|..+++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~~vvVvSA~~gvTd~L~~~~~~~~~~---~~~~~~~l~~i~~~h~~~~~ 77 (294)
T cd04257 1 MKVLKFGGTSLANAERIRRVADIILNAAKQEQVAVVVSAPGKVTDLLLELAELASSG---DDAYEDILQELESKHLDLIT 77 (294)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHhhccCCCEEEEEcCCCCcHHHHHHHHHHHhcC---ChhHHHHHHHHHHHHHHHHH
Confidence 6899999999999999999999999753 4678999999999999999988866532 12356679999999999999
Q ss_pred HhCCCH------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 161 ELGIDR------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 161 ~l~~~~------~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
+|..+. ..+++.+++|+++++++..+++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ ++|++
T Consensus 78 ~l~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~ 156 (294)
T cd04257 78 ELLSGDAAAELLSALGNDLEELKDLLEGIYLLGELPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDAREL-IVTDG 156 (294)
T ss_pred HhhcchhhHHHHHHHHHHHHHHHHHHHHHHhhccCChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHe-eEecC
Confidence 997653 35888999999999999999999999999999999999999999999999999999999996 88998
Q ss_pred CCCCceeee-cchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 235 DFTNADILE-ATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 235 ~~~~a~i~~-~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+|+++.+.. .+.+.+++.+. ..+.|||++||+|.+ .+|++|||||||||++|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~a~~~~~~~~~~l~~~~~----~~~~v~Vv~Gfig~~-~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvy 231 (294)
T cd04257 157 GYLNAVVDIELSKERIKAWFS----SNGKVIVVTGFIASN-PQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVY 231 (294)
T ss_pred CCCceEechHhhHHHHHHHHh----cCCCEEEecCcccCC-CCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccC
Confidence 999888753 33455544332 227899999999998 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
|+||+++|+|+++++|||+||.+|+++|++|+||+|+.||+++|||++|+|+++|+.+||+|+
T Consensus 232 t~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~~~GT~I~ 294 (294)
T cd04257 232 SADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPEAPGTLIS 294 (294)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999999999995
|
These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act |
| >cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-64 Score=516.86 Aligned_cols=285 Identities=40% Similarity=0.644 Sum_probs=256.6
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (557)
|+|+|||||||+|++++++++++|....+.+++||||||+|+||.|+++++.+.+.. ..+...++.++++|.+++++
T Consensus 1 m~V~KFGGtSv~~~~~i~~v~~iI~~~~~~~~vvVvSA~~gvTd~L~~~~~~a~~~~---~~~~~~l~~i~~~h~~~~~~ 77 (293)
T cd04243 1 MKVLKFGGTSVASAERIRRVADIIKSRASSPVLVVVSALGGVTNRLVALAELAASGD---DAQAIVLQEIRERHLDLIKE 77 (293)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCCCcHHHHHHHHHHHhcCC---hhHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999875456889999999999999999988765432 23444689999999999999
Q ss_pred hCCCHH------HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC
Q 008693 162 LGIDRS------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (557)
Q Consensus 162 l~~~~~------~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (557)
|..+.. .+..++++|+++++++.++++++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ +++++.
T Consensus 78 L~~~~~~~~~~~~i~~~~~~l~~~l~~~~~~~~~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~t~~~ 156 (293)
T cd04243 78 LLSGESAAELLAALDSLLERLKDLLEGIRLLGELSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDAREL-LLTDDG 156 (293)
T ss_pred hhcchhhHHHHHHHHHHHHHHHHHHHhhhhhccCCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHe-EEecCC
Confidence 987642 5888999999999999999999999999999999999999999999999999999999997 888888
Q ss_pred CCCceeeecc-hHHHHHHHhhchhcC-CceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 236 FTNADILEAT-YPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 236 ~~~a~i~~~~-~~~v~~~l~~~ll~~-~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
++++.+.... .+.++.. +.. +.|||++||+|.+ .+|++|||||||||++|+++|.+|+|+++++||||||||
T Consensus 157 ~~~~~~~~~~s~~~~~~~-----~~~~~~v~Vv~Gfig~~-~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiy 230 (293)
T cd04243 157 FLNAVVDLKLSKERLAQL-----LAEHGKVVVTQGFIASN-EDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVY 230 (293)
T ss_pred CCcchhhhHHHHHHHHHH-----HhcCCCEEEecCccccC-CCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccC
Confidence 8887764332 3333332 233 7899999999998 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
|+||+++|+|+++++|||+||.+|+++|++++||+|+.||+++|||++|+|+++|+.+||+|+
T Consensus 231 t~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~~~GT~I~ 293 (293)
T cd04243 231 TADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPEAPGTLIS 293 (293)
T ss_pred CCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999999999995
|
These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK- |
| >cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-64 Score=516.79 Aligned_cols=284 Identities=34% Similarity=0.550 Sum_probs=253.1
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
|+|+|||||||+|++++++++++|.... +++++||||||+|+||.|+++++.+.. ..+...++.+.++|.+++
T Consensus 1 ~~V~KFGGtSv~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~-----~~~~~~l~~i~~~~~~~~ 75 (295)
T cd04259 1 WVVLKFGGTSVSSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALL-----DEHHSLFNAIQSRHLNLA 75 (295)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhc-----cChHHHHHHHHHHHHHHH
Confidence 6899999999999999999999998642 457899999999999999998876543 225667999999999999
Q ss_pred HHhCCCH-HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 160 DELGIDR-SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 160 ~~l~~~~-~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
++|..+. ..+++.+++|+++++++.++++++++.+|+|+|+||++|+.||+++|+++|+++.++|++++ +++++++++
T Consensus 76 ~~L~~~~~~~i~~~~~~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~-i~~~~~~~~ 154 (295)
T cd04259 76 EQLEVDADALLANDLAQLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDAREL-LTATPTLGG 154 (295)
T ss_pred HHhhhhhhhHHHHHHHHHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHh-eeecccccc
Confidence 9998654 36889999999999999999999999999999999999999999999999999999999998 777777754
Q ss_pred c-------eee-ecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 239 A-------DIL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 239 a-------~i~-~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
+ ++. +.+..++.+.+. ..+.|||+|||+|.+ .+|++|||||||||++|+++|.+|+|+++++|||||
T Consensus 155 ~~~~~~~a~v~~~~~~~~l~~~l~----~~~~v~Vv~GFig~~-~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~ 229 (295)
T cd04259 155 ETMNYLSARCESEYADALLQKRLA----DGAQLIITQGFIARN-AHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVP 229 (295)
T ss_pred cccccccceehhhhhHHHHHHHHh----cCCceeEeCCceeeC-CCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCC
Confidence 3 331 223334443332 235799999999999 589999999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
||||+||+.+|+|+++++|||+||.+|+++|++++||+|++||+++|||++|+|+++|+++||+|+
T Consensus 230 Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~~~GT~I~ 295 (295)
T cd04259 230 GLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPELSGTLIT 295 (295)
T ss_pred ccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCCCCCcEeC
Confidence 999999999999999999999999999999999999999999999999999999999999999995
|
Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine. |
| >cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=517.21 Aligned_cols=288 Identities=32% Similarity=0.500 Sum_probs=246.1
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCC------cCcHHHHHhhHHhhhcCCCcchhhHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMG------KTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~g------g~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (557)
|+|+|||||||+|++ ++++++|... .+.+++||||||+ |+||.|+++++.+..+. ..++.+.++.+++
T Consensus 2 ~~V~KFGGtSv~~~~--~~v~~~i~~~~~~~~~~vVVvSA~~~~~~~~gvTd~L~~~~~~a~~~~--~~~~~~~l~~i~~ 77 (306)
T cd04247 2 WVVQKFGGTSVGKFP--DNIADDIVKAYLKGNKVAVVCSARSTGTKAEGTTNRLLQAADEALDAQ--EKAFHDIVEDIRS 77 (306)
T ss_pred CEEEEeCchhhccHH--HHHHHHHHhhhccCCceEEEEeccccCCCccChHHHHHHHHHHHHhhc--cccHHHHHHHHHH
Confidence 689999999999984 7999866642 2457899999998 99999999988764321 2467888999999
Q ss_pred HHHHHHHHhCCCH-------HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccc
Q 008693 154 LHHRTVDELGIDR-------SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226 (557)
Q Consensus 154 ~~~~~~~~l~~~~-------~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~ 226 (557)
+|.+++++|..+. ..+++.+++|++++.++.++++++++.+|+|+|+||+||+.||+.+|+++|+++.++|++
T Consensus 78 ~h~~~~~~L~~~~~~~~~~~~~i~~~~~~l~~~l~~~~~l~~~~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~ 157 (306)
T cd04247 78 DHLAAARKFIKNPELQAELEEEINKECELLRKYLEAAKILSEISPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLS 157 (306)
T ss_pred HHHHHHHHhccChhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHH
Confidence 9999999997653 247788999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCCCceeeecchHHHHHHHhhchhc-CCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEE
Q 008693 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWIT-DLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (557)
Q Consensus 227 ~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~-~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i 305 (557)
++ +.++.. ...+.......+.+.+...+.+ .+.|||+|||+|.+ .+|++||||||||||+|+++|.+|+|+++++
T Consensus 158 ~~-i~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~-~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i 233 (306)
T cd04247 158 HI-VDLDFS--IEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNV-PGGLLSQIGRGYTDLCAALCAVGLNADELQI 233 (306)
T ss_pred Hh-eecCCC--ccccccchhHHHHHHHHHHhhccCCceEEeeccEecC-CCCCeEEeCCCchHHHHHHHHHHcCCCEEEE
Confidence 96 444332 1111111112233333332222 46799999999998 5899999999999999999999999999999
Q ss_pred eeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEec
Q 008693 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (557)
Q Consensus 306 ~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (557)
|||||||||+||+++|+|++|++|||+||.||+++|++||||+|++||+++||||+|+|+|+|+++||+|.+
T Consensus 234 ~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~~~GT~I~~ 305 (306)
T cd04247 234 WKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPRGEGTVIYP 305 (306)
T ss_pred eecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCCCCCcEEcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999975
|
Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. |
| >PRK08373 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-60 Score=495.11 Aligned_cols=322 Identities=30% Similarity=0.466 Sum_probs=266.3
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcC-CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~-~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
+|+|+|||||||++ ++++++++|... .+++++||||||+|+||.|+++++.+ ....++.++++|.+++
T Consensus 4 ~m~V~KFGGsSv~~--~~~~v~~ii~~~~~~~~vvVVVSA~~gvTd~L~~l~~~~---------~~~~l~~i~~~h~~~~ 72 (341)
T PRK08373 4 KMIVVKFGGSSVRY--DFEEALELVKYLSEENEVVVVVSALKGVTDKLLKLAETF---------DKEALEEIEEIHEEFA 72 (341)
T ss_pred CCEEEEECCcchHh--HHHHHHHHHHHHhcCCCEEEEecCCchHHHHHHHHHHHH---------hHHHHHHHHHHHHHHH
Confidence 57999999999998 599999999853 24678999999999999999987643 1456889999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
++|+.+.. .+.++|++.++.+..+ ++++.+|+|+|+||++|+.+++.+|+++|+++.+++++++ +.|++.|+++
T Consensus 73 ~~L~~~~~---~~~~~l~~~~~~~~~~--~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~-i~t~~~~~~a 146 (341)
T PRK08373 73 KRLGIDLE---ILSPYLKKLFNSRPDL--PSEALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEI-LEAKGSFGNA 146 (341)
T ss_pred HHhccchh---hHHHHHHHHHHHhhcc--CChHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHh-eeecCCccce
Confidence 99987643 3445566666543322 3578899999999999999999999999999999999998 8888889888
Q ss_pred eeeec-chHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCC
Q 008693 240 DILEA-TYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (557)
Q Consensus 240 ~i~~~-~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~ 318 (557)
++... +...+ +.+. .+++.+.|||++||+| + .+|.++||||||||++|+++|.+|+|+++++|||||||||+||+
T Consensus 147 ~i~~~~s~~~~-~~l~-~~l~~g~VpVv~Gf~g-~-~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~ 222 (341)
T PRK08373 147 FIDIKKSKRNV-KILY-ELLERGRVPVVPGFIG-N-LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPK 222 (341)
T ss_pred eechhhhhhhH-HHHH-HHHhCCcEEEEeCCcc-C-CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCC
Confidence 87321 11112 2233 3457889999999999 7 58999999999999999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeeccEEEE
Q 008693 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTML 398 (557)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~nialI 398 (557)
++|+|+++++|||+||.+|+++|++++||+|++||++ |||++|+|+|+| .+||+|++..+ ....++++ +.+|.+.|
T Consensus 223 ~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~-~~GT~I~~~~~-~~~~~~~~-~~~~~~~i 298 (341)
T PRK08373 223 LVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDW-RMGTLVSNESS-GMPILVHK-VGEEHAEI 298 (341)
T ss_pred CCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCC-CCCcEEecCCC-CCceEEEE-ecCCEEEE
Confidence 9999999999999999999999999999999999999 999999999998 58999987543 33568888 89999999
Q ss_pred EEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCch
Q 008693 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (557)
Q Consensus 399 tI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~ 444 (557)
++.+. ...+++ . .+.-++..+.+.+++++
T Consensus 299 ~~~~~--~~~~~~-------------~--~~~~~~~~~~~~~~~~~ 327 (341)
T PRK08373 299 LVVGV--EEEIGY-------------P--VYEEGEFWFKIKVPKEE 327 (341)
T ss_pred EEecc--CCCCCC-------------C--ceecCCceEEEecCHHH
Confidence 99852 222321 1 23445667777777654
|
|
| >TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-58 Score=472.08 Aligned_cols=289 Identities=31% Similarity=0.470 Sum_probs=244.7
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
|+|+|||||||+++ +++++++|.... +.+++||||||+|+||.|+++++.+ ....++.++++|.++++
T Consensus 1 m~V~KFGGsSv~~~--~~~v~~ii~~~~~~~~~vVVVSA~~gvTd~L~~~~~~~---------~~~~l~~i~~~h~~~~~ 69 (327)
T TIGR02078 1 MIVVKFGGSSVRYA--FEEALELVKSLSEEKRVIVVVSALKGITDCLIRYANTF---------DKSAALEIEEIYEEFAK 69 (327)
T ss_pred CEEEEECCcchHHH--HHHHHHHHHHHhcCCCEEEEeCCCcchHHHHHHHHHHH---------HHHHHHHHHHHHHHHHH
Confidence 58999999999986 999999998643 4578999999999999999976421 13568899999999999
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCce
Q 008693 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (557)
Q Consensus 161 ~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~ 240 (557)
+|+.+...+.+.++++.+. .. -+++..+|+|+|+||++|+.|++. |+++.+++++++ ++|++.|+++.
T Consensus 70 ~L~~~~~~~~~~l~~~~~~---~~---l~~~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~-i~t~~~~~~a~ 137 (327)
T TIGR02078 70 ELGVDLNILSPYLKELFNP---PD---LPKEALRDYILSLGERLSAVIFAE-----GINGKVVDPWDI-FFAKGDFGNAF 137 (327)
T ss_pred HhccchhhhHHHHHHHHhh---hc---cCChHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHH-hccCCcCCcee
Confidence 9998765555555555443 11 245678999999999999999986 899999999998 88888999888
Q ss_pred ee-ecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 241 IL-EATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 241 i~-~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
+. +....+++. +. .+++.+.|||++||+| + .+|.++|+||||||++|+++|.+|+|+++++|||||||||+||++
T Consensus 138 ~~~~~~~~~~~~-l~-~~l~~g~IpVv~Gf~~-~-~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~ 213 (327)
T TIGR02078 138 IDIKKSKRNAKI-LY-EVLESGKIPVIPGFYG-N-LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKL 213 (327)
T ss_pred echhhhHhhHHH-HH-HHHhCCcEEEEeCCcc-C-CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCc
Confidence 75 222222322 32 2356788999999999 7 489999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeecc-EEEE
Q 008693 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRN-VTML 398 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~n-ialI 398 (557)
+|+|++++++||+||.+++++|++++||+|++||+++|||++|+|+++|+ +||+|+...+. ...|+++++ +++|
T Consensus 214 v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~-~GT~I~~~~~~----~~~i~~~~~~i~~v 288 (327)
T TIGR02078 214 VPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR-MGTLISNRSSG----MPLMVYKDGELLVV 288 (327)
T ss_pred CCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC-CCcEEecCCCC----CcEEEEccCcEEEE
Confidence 99999999999999999999999999999999999999999999999997 89999875432 445888999 9999
Q ss_pred EEEe
Q 008693 399 DIVS 402 (557)
Q Consensus 399 tI~~ 402 (557)
.+..
T Consensus 289 ~~~~ 292 (327)
T TIGR02078 289 NVRR 292 (327)
T ss_pred EEee
Confidence 9853
|
This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between. |
| >cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=464.30 Aligned_cols=279 Identities=27% Similarity=0.390 Sum_probs=224.2
Q ss_pred EEEEecccccCCHHHHHHHHHHHHcCCC--CccEEEEcCCCcCcHHHHHhhHHh---hhcC--CCcchhhHHHHHHHHHH
Q 008693 83 CVMKFGGSSLASAERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKA---VSCG--VTNISCIDELSFVKDLH 155 (557)
Q Consensus 83 ~V~KFGGsSv~~~~~~~~va~iI~~~~~--~~~vvVVSA~gg~Td~L~~~~~~a---~~~~--~~~~~~~~~l~~i~~~~ 155 (557)
.|+|||||||++.+.++. ++|..... ..+|+||||++|+||.|++.-+.. +... ..+..|.+.|+.++++|
T Consensus 2 ~V~K~GGTSms~~~~~~d--~i~~~~~~~~~~rv~VVSA~~gvT~~Lle~k~t~~~gv~~~~~~~~~~~~~al~~~~~~~ 79 (304)
T cd04248 2 TVEKIGGTSMSAFGAVLD--NIILKPDSDLYGRVFVVSAYSGVTNALLEHKKTGAPGIYQHFVDADEAWREALSALKQAM 79 (304)
T ss_pred ceeeecCcccccHHHHhh--hHhcCCcccCccEEEEEECCccchHHHHHhhhcCCcchhHHHhcCchHHHHHHHHHHHHH
Confidence 699999999999988888 66663222 358999999999999999731110 0000 12244788899999999
Q ss_pred HHHHHHhCCC------H-HHHHHHH-------HHHHHHH-HhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCce
Q 008693 156 HRTVDELGID------R-SIIATHL-------EELEQLL-KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKA 220 (557)
Q Consensus 156 ~~~~~~l~~~------~-~~i~~~~-------~~l~~~l-~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a 220 (557)
.++..+|..+ . +++.+.+ .++.+++ .|+..+++++++.+|+|+|+||++|+.+++.+|+++|++|
T Consensus 80 ~~~~~~l~~~~~~~~~a~~~i~~r~~~~~~~l~~~~~~~~~g~~~l~e~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A 159 (304)
T cd04248 80 LKINEAFADIGLDVEQADAFIGARIQDARACLHDLARLCSSGYFSLAEHLLAARELLASLGEAHSAFNTALLLQNRGVNA 159 (304)
T ss_pred HHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhCCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCe
Confidence 8888777643 1 2344443 3344444 5778889999999999999999999999999999999999
Q ss_pred EEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCc
Q 008693 221 RQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGL 300 (557)
Q Consensus 221 ~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A 300 (557)
+++|...+ ...+.+. ....+.+.+.. +...+.|||+|||.+ + .+|+++|||||||||||+++|++|+|
T Consensus 160 ~~vD~~~~--~~~~~~t-------~~~~i~~~~~~-~~~~~~v~IvtGF~~-~-~~G~itTLGRGGSDyTAs~iAa~l~A 227 (304)
T cd04248 160 RFVDLSGW--RDSGDMT-------LDERISEAFRD-IDPRDELPIVTGYAK-C-AEGLMREFDRGYSEMTFSRIAVLTGA 227 (304)
T ss_pred EEECcccc--cccCCCC-------cHHHHHHHHHh-hccCCcEEEeCCccC-C-CCCCEEEcCCCcHHHHHHHHHHHcCC
Confidence 99887653 2112211 12344444432 233567999999954 5 48999999999999999999999999
Q ss_pred CcEEEeeCCCccccCCCCCC--CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 301 QEIQVWKDVDGVLTCDPNIH--PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 301 ~~l~i~TDVdGV~taDP~~v--~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
++++|||||+ |||+|||+| |+|++|++|||+||.||+++|++||||+|++||+++||||+|+|+|+|+++||+|+
T Consensus 228 ~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~~~GTlIt 304 (304)
T cd04248 228 SEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPDHPGTLIT 304 (304)
T ss_pred CEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCCCCCceeC
Confidence 9999999996 999999999 68999999999999999999999999999999999999999999999999999995
|
Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon. |
| >cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-47 Score=379.99 Aligned_cols=237 Identities=38% Similarity=0.607 Sum_probs=211.0
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
++|+||||+++.|++.++++++.|.... +.++++|+||+++.|++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~------------------------ 56 (239)
T cd04261 1 LIVQKFGGTSVASIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEIS------------------------ 56 (239)
T ss_pred CEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhc------------------------
Confidence 4799999999999999999999998743 45789999999999999987532110
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
+..+.+.+|.++++||++|+.+++++|+++|++++++++.++++++.++|+.+
T Consensus 57 ---------------------------~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04261 57 ---------------------------PRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCcc
Confidence 12345677889999999999999999999999999999999989998888777
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
++...+.+.+.+ +++++.|||++||+|.+ .+|.++++|||++|++|+++|.+|+|+++++||||||||++||+.
T Consensus 110 ~i~~~~~~~l~~-----ll~~~~ipVi~G~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~ 183 (239)
T cd04261 110 RIIDIDPDRIRE-----LLEEGDVVIVAGFQGIN-EDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHHcCCeEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCC
Confidence 775555443332 35678999999999999 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
+|+++++++|+|+|+.+|+++|++++||+|++||+++|||++|+|+++|+ +||+|+
T Consensus 184 ~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~-~gt~i~ 239 (239)
T cd04261 184 VPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE-PGTLIT 239 (239)
T ss_pred CCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999999999999999999999999999999999999999 999995
|
In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and |
| >cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=377.51 Aligned_cols=225 Identities=49% Similarity=0.860 Sum_probs=198.5
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcC-CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSF-PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~-~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
|+|+|||||++++++.+++++++|... .+.++|||+||++++|+.|++.+
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~g~~vvvV~Sg~~~~t~~l~~~~----------------------------- 51 (227)
T cd04234 1 MVVQKFGGTSVASAERIKRVADIIKAYEKGNRVVVVVSAMGGVTDLLIELA----------------------------- 51 (227)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhhcCCCEEEEEcCCCcccHHHHHHH-----------------------------
Confidence 689999999999999999999999875 34678999999999999886520
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCce
Q 008693 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNAD 240 (557)
Q Consensus 161 ~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~ 240 (557)
.++++||.+|+.+++++|+++|+++.++++.++.+.+++.+....
T Consensus 52 -----------------------------------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~ 96 (227)
T cd04234 52 -----------------------------------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAAR 96 (227)
T ss_pred -----------------------------------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhh
Confidence 578899999999999999999999999999998555544323233
Q ss_pred eeecchHHHHHHHhhchhcC-CceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 241 ILEATYPAVAKRLHGDWITD-LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 241 i~~~~~~~v~~~l~~~ll~~-~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
+.+.+...+. .+++. +.|||++||+|.+ ++|.++++||||||++|+++|.+|+|+++++|||||||||+||+.
T Consensus 97 ~~~~~~~~l~-----~~l~~~~~vpVv~g~i~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~ 170 (227)
T cd04234 97 IIEISYERLK-----ELLAEIGKVPVVTGFIGRN-EDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRI 170 (227)
T ss_pred HHHHHHHHHH-----HHHhhCCCEEEecCceecC-CCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCC
Confidence 3333333333 23566 8999999999998 589999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
+|++++++++||+|+.+|+++|++++||+|+++|++++||++|+|+++|+.+||+|+
T Consensus 171 ~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~~~gT~I~ 227 (227)
T cd04234 171 VPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPEAPGTLIT 227 (227)
T ss_pred CCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCCCCCCEeC
Confidence 999999999999999999999999999999999999999999999999999999984
|
AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd |
| >cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=376.60 Aligned_cols=237 Identities=39% Similarity=0.627 Sum_probs=210.4
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
|+|+||||+++.|++.++++++.|.... +.++++|+||+++.+++|++......
T Consensus 1 ~iViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~------------------------ 56 (239)
T cd04246 1 IIVQKFGGTSVADIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVS------------------------ 56 (239)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhc------------------------
Confidence 6899999999999999999999998753 46789999999999999987532100
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
...+...+|.++++||.+|+.+++++|+++|++++++++.+.++++.++|+++
T Consensus 57 ---------------------------~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~ 109 (239)
T cd04246 57 ---------------------------PRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNA 109 (239)
T ss_pred ---------------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCce
Confidence 01245667889999999999999999999999999999999888988888877
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
++...+...+.+ +++++.|||++||+|.+ .+|.++++|||++|++|+++|.+|+|+++++||||||||++||+.
T Consensus 110 ~~~~~~~~~l~~-----ll~~g~ipVi~g~~~~~-~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~ 183 (239)
T cd04246 110 RIIDIDPKRILE-----ALEEGDVVVVAGFQGVN-EDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRI 183 (239)
T ss_pred eechhhHHHHHH-----HHhcCCEEEEcCccccC-CCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCC
Confidence 775555444332 35678999999999998 489999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
+|+++++++|||+|+.+|+++|++++||+|++||+++|||++|+|+++|+ +||+|+
T Consensus 184 ~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~-~gt~i~ 239 (239)
T cd04246 184 VPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN-PGTLIT 239 (239)
T ss_pred CCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC-CCcEeC
Confidence 99999999999999999999999999999999999999999999999999 999995
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati |
| >cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=374.65 Aligned_cols=237 Identities=34% Similarity=0.611 Sum_probs=207.0
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcC-----cHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKT-----TNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~-----Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
++|+|||||++.|++.++++++.|.... +.+++||+||||+. |+.|.....
T Consensus 1 ~~ViK~GGs~l~~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~---------------------- 58 (244)
T cd04260 1 IIVQKFGGTSVSTKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVY---------------------- 58 (244)
T ss_pred CEEEEECchhcCCHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHH----------------------
Confidence 3799999999999999999999998753 35789999999773 554433210
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
..+ ...+++.+|.++++||.+++.+++++|+++|+++.++++.+.++++.+
T Consensus 59 ------~~~-----------------------~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~ 109 (244)
T cd04260 59 ------AEN-----------------------SDISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDD 109 (244)
T ss_pred ------hhc-----------------------CCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecC
Confidence 000 123567789999999999999999999999999999999999999999
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
+++.+++...+.+.+.+ +++.+.|||++||+|.+ .+|++++++|||+|++|+++|.+|+|+++++||||||||+
T Consensus 110 ~~~~~~v~~~~~~~l~~-----ll~~g~VPVv~g~~~~~-~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~ 183 (244)
T cd04260 110 NYSNAKIIKVNPKKILS-----ALKEGDVVVVAGFQGVT-EDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMT 183 (244)
T ss_pred CCCceeeeccCHHHHHH-----HHhCCCEEEecCCcccC-CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCc
Confidence 88877766556554432 35678999999999998 4899999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
+||+.+|++++|++|||+|+.+|+++|++++||+|++++++++||++|+|+++|+ +||+|+
T Consensus 184 ~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~-~gt~i~ 244 (244)
T cd04260 184 ADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN-PGTLIT 244 (244)
T ss_pred CCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC-CCCEeC
Confidence 9999999999999999999999999999999999999999999999999999998 999995
|
In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet |
| >cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=303.81 Aligned_cols=237 Identities=40% Similarity=0.603 Sum_probs=199.0
Q ss_pred EEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 008693 84 VMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (557)
Q Consensus 84 V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (557)
|+||||+++.+.+.++++++.|... .+.+.|+|+||+++.|+.+.+.....
T Consensus 1 ViKiGGs~l~~~~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~--------------------------- 53 (248)
T cd02115 1 VIKFGGSSVSSEERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELL--------------------------- 53 (248)
T ss_pred CEeeCccccCCHHHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhh---------------------------
Confidence 7899999999999999999999974 24578999999999999887643211
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC-ce
Q 008693 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN-AD 240 (557)
Q Consensus 162 l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~-a~ 240 (557)
.+..+ ...+....+.++++||.+++.++.++|+++|+++.++++.++.+.+. +++. ..
T Consensus 54 ----------------~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~-~~~~~g~ 112 (248)
T cd02115 54 ----------------GYARG----LRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASP-NQGHVGK 112 (248)
T ss_pred ----------------hhhhc----cCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeC-CCCCccc
Confidence 00000 13466778999999999999999999999999999999999865544 4433 44
Q ss_pred eeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCC
Q 008693 241 ILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320 (557)
Q Consensus 241 i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v 320 (557)
+...+.+.+++. ++.+.|||++||.+.+. + +..+++|++||++|+.+|.+|+|+++++||||||||++||+++
T Consensus 113 ~~~~~~~~l~~~-----l~~~~ipVv~g~~~~~~-~-~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~ 185 (248)
T cd02115 113 ITKVSTDRLKSL-----LENGILPILSGFGGTDE-K-ETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKV 185 (248)
T ss_pred ceeeCHHHHHHH-----HhCCcEEEecCeEeccC-C-ceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcC
Confidence 555555555432 45789999999988763 4 6788999999999999999999999999999999999999999
Q ss_pred CCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCC--------CCCCCeeE
Q 008693 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYN--------PNAPGTLI 375 (557)
Q Consensus 321 ~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~--------p~~~GT~I 375 (557)
|++++|++|||+|+.+++++|+.++||+++.+++++++|++|.|+++ ++++||+|
T Consensus 186 ~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~GT~I 248 (248)
T cd02115 186 PDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGALALFTPDGGGTLI 248 (248)
T ss_pred CcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccccccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999988 56677765
|
The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition. |
| >PRK12314 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-31 Score=272.28 Aligned_cols=227 Identities=22% Similarity=0.311 Sum_probs=180.5
Q ss_pred CcceEEEEecccccC------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 79 KQLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
.|+++|+||||||+. +.++++++++.|.+.. +.++|+|+||+++.+..++....
T Consensus 8 ~~~~iViK~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~~------------------ 69 (266)
T PRK12314 8 NAKRIVIKVGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLDK------------------ 69 (266)
T ss_pred hCCEEEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeecccc------------------
Confidence 477899999999999 7899999999998642 34567788998888876653210
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.......++.+++.||.++..++..+|+++|+++ +|+ +
T Consensus 70 ------------------------------------~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~-----~q~-l 107 (266)
T PRK12314 70 ------------------------------------RPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVV-----AQI-L 107 (266)
T ss_pred ------------------------------------CCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-E
Confidence 0012234688999999999999999999999974 566 8
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecC----CCcchhHHHHHHHHcCcCcEEEe
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLG----RGGSDLTATTIGKALGLQEIQVW 306 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlg----RgGSD~tAa~lA~~L~A~~l~i~ 306 (557)
+|.++|.+.+.. .+..+.+. .+++.|.|||+.+ ++.+++.+ +|++|++|+++|.+|+|+.++||
T Consensus 108 lT~~~~~~~~~~----~~~~~~l~-~ll~~g~IPVv~~-------nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liil 175 (266)
T PRK12314 108 LTRDDFDSPKSR----ANVKNTFE-SLLELGILPIVNE-------NDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIIL 175 (266)
T ss_pred EecccccchHHH----HHHHHHHH-HHHHCCCEEEEcC-------CCCeeeccccceecchHHHHHHHHHHhCCCEEEEE
Confidence 888888766542 22233333 3567899999953 45565665 89999999999999999999999
Q ss_pred eCCCccccCCCCCCCCCccccccCH--HHHHHHHHc-------CCCcchHhHHHHHHhCCCCEEEecCCCCC--------
Q 008693 307 KDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELAYF-------GAQVLHPQSMRPAREGDIPVRVKNSYNPN-------- 369 (557)
Q Consensus 307 TDVdGV~taDP~~v~~a~~i~~ls~--~Ea~eLa~~-------Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~-------- 369 (557)
|||||||++||+.+|+|++|++++| +|..+++.. |..+.|++++..|.++|+|++|.|+++|+
T Consensus 176 TDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g 255 (266)
T PRK12314 176 SDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEG 255 (266)
T ss_pred eCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcC
Confidence 9999999999999999999999997 666666543 46778889999999999999999988874
Q ss_pred -CCCeeEec
Q 008693 370 -APGTLIRR 377 (557)
Q Consensus 370 -~~GT~I~~ 377 (557)
..||+|.+
T Consensus 256 ~~~GT~i~~ 264 (266)
T PRK12314 256 ESIGTLFAP 264 (266)
T ss_pred CCCceEEcc
Confidence 46888864
|
|
| >PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-32 Score=275.01 Aligned_cols=233 Identities=35% Similarity=0.455 Sum_probs=179.3
Q ss_pred ceEEEEecccccCCH--HHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASA--ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~--~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
+++|+|||||++.+. + ++++++.|.... ...++||||++|+.+|.+++........ .. ..+|..
T Consensus 1 k~~ViK~GGs~l~~~~~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~~~~~~~-------~~-----~~r~~~ 67 (242)
T PF00696_consen 1 KTIVIKLGGSSLTDKDEE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKYGIEPKF-------VD-----GSRVTD 67 (242)
T ss_dssp SEEEEEE-HHGHSSHSHH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHCTHTTSE-------ET-----HHCHBH
T ss_pred CeEEEEECchhhCCchHH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhccCCccc-------ch-----hhhhhh
Confidence 478999999999998 7 999999998642 3466799999999999998763221110 00 011111
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
....+.. -.....+|.+ +...|.+++.|+.+++.++...+.+.|+.+...++.
T Consensus 68 ~~~~~~~----~~~~~~~l~~------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 120 (242)
T PF00696_consen 68 IETGLII----TMAAAAELNR------------DALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDAR----------- 120 (242)
T ss_dssp HHHHHHH----HHHHHHHHHH------------HHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESS-----------
T ss_pred hhhhHHH----HHHHhhcccc------------chhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhh-----------
Confidence 1110000 0000111111 467788999999999999999999988877766543
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP 317 (557)
..+.+.+.+ +++++.|||++||.+.+ .+|++++++++++|++|+.+|.+|+|+++++||||||||++||
T Consensus 121 -----~~~~~~i~~-----~l~~~~ipVv~g~~~~~-~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP 189 (242)
T PF00696_consen 121 -----EVDKEAIRE-----LLEQGIIPVVSGFAGID-DDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADP 189 (242)
T ss_dssp -----EEHHHHHHH-----HHHTTSEEEEESEEEEE-TTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSST
T ss_pred -----hhHHHHHHH-----HHHCCCEEEEeCCcccC-CCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCC
Confidence 112233333 34578999999999888 4899999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccCHHHHHHHH------HcCCCcchHhHHHHHHhCCCCEEEec
Q 008693 318 NIHPHAKPVPYLTFDEAAELA------YFGAQVLHPQSMRPAREGDIPVRVKN 364 (557)
Q Consensus 318 ~~v~~a~~i~~ls~~Ea~eLa------~~Ga~vlhp~a~~~a~~~~Ipv~I~n 364 (557)
+.+|+++++++|||+|+.+|+ ++|++++||.|+++++++++|++|.|
T Consensus 190 ~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 190 RIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp TTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 999999999999999999999 89999999999999999999999986
|
In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A .... |
| >cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-30 Score=262.19 Aligned_cols=215 Identities=23% Similarity=0.383 Sum_probs=170.1
Q ss_pred EEEEecccccCCHH------HHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 83 CVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 83 ~V~KFGGsSv~~~~------~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
+|+|||||++.+.+ .++++++.|.+.. +.+.|+|+||+++.+...+..
T Consensus 2 iViK~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~------------------------ 57 (251)
T cd04242 2 IVVKVGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGL------------------------ 57 (251)
T ss_pred EEEEeCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhcc------------------------
Confidence 79999999999876 9999999998643 345677888877766321110
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
.. +......++.++++||..+..+++.+|+++|+++ +++ ++|++
T Consensus 58 ----------~~--------------------~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~-----~q~-l~t~~ 101 (251)
T cd04242 58 ----------EK--------------------RPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKV-----AQI-LLTRD 101 (251)
T ss_pred ----------Cc--------------------CCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeE-----EEE-EEehh
Confidence 00 0001234578999999999999999999999996 344 67777
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceee--cCCCcchhHHHHHHHHcCcCcEEEeeCCCcc
Q 008693 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV 312 (557)
+|.++.. +....+.+ ..+++.+.|||+.+ ++.+++ ++||++|++|+.+|.+|+|++++||||||||
T Consensus 102 ~~~~~~~----~~~~~~~i-~~ll~~g~iPVv~~-------~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGv 169 (251)
T cd04242 102 DFEDRKR----YLNARNTL-ETLLELGVIPIINE-------NDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGL 169 (251)
T ss_pred HhcchHH----HHHHHHHH-HHHHHCCCEEEEcC-------CCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEE
Confidence 7765542 12222223 34567889999954 345555 8999999999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccC--HHHHHHHH-----HcCCCcchH--hHHHHHHhCCCCEEEecCCCCC
Q 008693 313 LTCDPNIHPHAKPVPYLT--FDEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 313 ~taDP~~v~~a~~i~~ls--~~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
|++||+.+|++++|++++ ++|+.+++ .+|..+||| +++..+.++|+|++|.|++.|+
T Consensus 170 y~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~ 235 (251)
T cd04242 170 YDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPD 235 (251)
T ss_pred EeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 999999999999999999 99999996 678999999 6889999999999999988874
|
G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir |
| >PRK14557 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=253.84 Aligned_cols=219 Identities=24% Similarity=0.319 Sum_probs=169.4
Q ss_pred CcceEEEEecccccCC-------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHH
Q 008693 79 KQLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~ 149 (557)
+.+.+|+||||+++.+ .++++++++.|+... +.+++||||| | |.+.. +
T Consensus 3 ~~~riViKlGG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGg-G---n~~rg--~----------------- 59 (247)
T PRK14557 3 PYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-G---NIFRG--H----------------- 59 (247)
T ss_pred cccEEEEEeCceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECC-c---HHHHH--H-----------------
Confidence 3567999999999988 789999999998642 3567888887 3 43321 0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeE
Q 008693 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (557)
Q Consensus 150 ~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (557)
.++.++. +....|+++++||++|+.+++.+|++. ++++.+
T Consensus 60 --------~a~~~~~-------------------------~~~~~D~ig~~g~~lna~ll~~~l~~~-------~~~~~~ 99 (247)
T PRK14557 60 --------LAEEWGI-------------------------DRVEADNIGTLGTIINSLMLRGVLTSK-------TNKEVR 99 (247)
T ss_pred --------HHHhcCC-------------------------ChHHHHHHHHHHHHHHHHHHHHHHHhh-------hCCcee
Confidence 0111221 234569999999999999999999984 455666
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEee-C
Q 008693 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-D 308 (557)
Q Consensus 230 iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~T-D 308 (557)
++|+..+.... .. ....++.+. ++++.|||++||+|.+ ..+ ||++|+++|.+++|+.+++|| |
T Consensus 100 i~t~~~~~~~~-~~----~~~~~~~~~-l~~g~VvV~~G~~g~~----~~s------tD~lAallA~~l~Ad~li~~ttd 163 (247)
T PRK14557 100 VMTSIPFNAVA-EP----YIRLRAVHH-LDNGYIVIFGGGNGQP----FVT------TDYPSVQRAIEMNSDAILVAKQG 163 (247)
T ss_pred EEecccccccc-ch----hhHHHHHHH-HhCCCEEEEECCcCCC----ccC------hHHHHHHHHHHhCCCEEEEecCC
Confidence 78776665221 11 111223333 4678899999998843 233 999999999999999999995 9
Q ss_pred CCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEecCC
Q 008693 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR 379 (557)
Q Consensus 309 VdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~ 379 (557)
||||||+||+.+|+|++|++++|+|+. +.+.++|||+|+++|.++|||++|.|..+|+ ..||+|.+..
T Consensus 164 VdGvY~~DP~~~~~Ak~i~~i~~~e~~---~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 164 VDGVFTSDPKHNKSAKMYRKLNYNDVV---RQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred cCEeECCCCCCCCCCEEeeEEChhhhc---ccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 999999999999999999999999884 5688999999999999999999999998885 4799997643
|
|
| >cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=252.76 Aligned_cols=204 Identities=24% Similarity=0.331 Sum_probs=160.0
Q ss_pred EEEEecccccCC------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 83 CVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 83 ~V~KFGGsSv~~------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
+|+|||||++.+ .+.++++++.|.+.. +.+.++|+|| |...+.....
T Consensus 2 iViKiGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~gg-G~~a~~~~~~------------------------ 56 (229)
T cd04239 2 IVLKLSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGG-GNIARGYIAA------------------------ 56 (229)
T ss_pred EEEEECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECC-ChHHhhHHHh------------------------
Confidence 699999999988 799999999998642 2455666665 4333322110
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
.+ ..++...|++.+.||++|+.+|+.+|+++|+++..+++.+++.++.
T Consensus 57 ------~~-------------------------~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~- 104 (229)
T cd04239 57 ------AR-------------------------GMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAE- 104 (229)
T ss_pred ------hc-------------------------CCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhc-
Confidence 00 0122345788899999999999999999999999999887532211
Q ss_pred CCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 235 DFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
..+.+. +. .+++.+.|||++||.|... +.||++|+.+|.+|+|+++++||||||||+
T Consensus 105 --------~~~~~~----l~-~~l~~g~ipVi~g~~g~~~----------~~sD~~A~~lA~~l~a~~li~~tdVdGvy~ 161 (229)
T cd04239 105 --------PYIRRR----AI-RHLEKGRIVIFGGGTGNPG----------FTTDTAAALRAEEIGADVLLKATNVDGVYD 161 (229)
T ss_pred --------cccHHH----HH-HHHhCCCEEEEeCccCCCC----------CCcHHHHHHHHHHcCCCEEEEEECCCcccC
Confidence 112222 22 2356889999999986431 239999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
+||+.+|+|++|++++|+|+.+++. +++||.+++++.++++|++|.|+++|+
T Consensus 162 ~dP~~~~~a~~i~~i~~~e~~~~~~---~~~~~~a~~~~~~~~i~v~I~~g~~~~ 213 (229)
T cd04239 162 ADPKKNPDAKKYDRISYDELLKKGL---KVMDATALTLCRRNKIPIIVFNGLKPG 213 (229)
T ss_pred CCCCCCCCCeEEeEEcHHHHHHHhc---CCccHHHHHHHHHCCCeEEEECCCChh
Confidence 9999999999999999999999865 899999999999999999999998874
|
Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als |
| >PRK00358 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=250.21 Aligned_cols=206 Identities=24% Similarity=0.346 Sum_probs=157.2
Q ss_pred ceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 81 ~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
+++|+|||||++. +.+.++++++.|.+.. +.++++|+|+ |......
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gG-G~~a~~~------------------------ 55 (231)
T PRK00358 1 KRVLLKLSGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGG-GNIFRGY------------------------ 55 (231)
T ss_pred CeEEEEeccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHH------------------------
Confidence 3589999999998 6789999999998743 2355666663 3221110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
... .++ .+....|++.+.++++|+.+|+.+|+++|+++..+++.+.+.+
T Consensus 56 ----~~~--~~~-------------------------~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~ 104 (231)
T PRK00358 56 ----IGA--AAG-------------------------MDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQV 104 (231)
T ss_pred ----HHh--hcC-------------------------CChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccc
Confidence 000 011 1223457788889999999999999999999987776554333
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
+. .+ .. +.+. .+++++.|||++||.+.+ + +.+|++|+.+|.+|+|+++++||||||
T Consensus 105 ~~-~~--------~~----~~~~-~~l~~g~vPVv~g~~~~~---~-------~ssD~~A~~lA~~l~A~~li~~tdVdG 160 (231)
T PRK00358 105 AE-PY--------IR----RRAI-RHLEKGRVVIFAAGTGNP---F-------FTTDTAAALRAEEIGADVLLKATNVDG 160 (231)
T ss_pred cC-cc--------cH----HHHH-HHHHCCCEEEEECCCCCC---C-------CCchHHHHHHHHHcCCCEEEEeeCcCc
Confidence 21 10 11 2233 345788999999875421 1 239999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
||++||+.+|+|++|++++|+|+.++ |++++||.++++|.++++|++|.|+++|+
T Consensus 161 Vy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a~~~a~~~~i~v~I~~g~~~~ 215 (231)
T PRK00358 161 VYDADPKKDPDAKKYDRLTYDEVLEK---GLKVMDATAISLARDNKIPIIVFNMNKPG 215 (231)
T ss_pred eEcCCCCCCCCCEEeeEecHHHHHHc---CCcchhHHHHHHHHHcCCcEEEECCCCch
Confidence 99999999999999999999998877 99999999999999999999999998875
|
|
| >PRK14558 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.3e-29 Score=246.49 Aligned_cols=153 Identities=21% Similarity=0.301 Sum_probs=126.6
Q ss_pred CHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCC
Q 008693 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF 269 (557)
Q Consensus 190 ~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gf 269 (557)
++...|.++++||+||+.+++.+|.++|+++.++++ +.+..+ +...+.. .+. .+++.+.|||++||
T Consensus 61 ~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~----~~~~~~-----~~~~~~~----~i~-~ll~~g~vpV~~G~ 126 (231)
T PRK14558 61 SPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQ----IVNLPS-----VEPINYD----DIE-LYFRAGYIVIFAGG 126 (231)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecc----ccccch-----hhhhhHH----HHH-HHHHCCCEEEEECC
Confidence 445678899999999999999999999999999885 222211 1111222 233 23567899999998
Q ss_pred CcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhH
Q 008693 270 LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQS 349 (557)
Q Consensus 270 ig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a 349 (557)
.+.. . +.+|++|+++|.+|+|+++++||||||||++||+.+|+|+++++++|+|+.++ |++++||++
T Consensus 127 ~~~~----~------~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~d~~a 193 (231)
T PRK14558 127 TSNP----F------FTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKM---GLKVMDTEA 193 (231)
T ss_pred CCCC----C------CCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHc---CcccccHHH
Confidence 6522 1 23899999999999999999999999999999999999999999999999987 889999999
Q ss_pred HHHHHhCCCCEEEecCCCCC
Q 008693 350 MRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 350 ~~~a~~~~Ipv~I~n~~~p~ 369 (557)
+++|+++|||++|.|+++|+
T Consensus 194 ~~~a~~~gi~v~I~ng~~~~ 213 (231)
T PRK14558 194 FSICKKYGITILVINFFEPG 213 (231)
T ss_pred HHHHHHCCCCEEEEeCCCCC
Confidence 99999999999999998874
|
|
| >cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.96 E-value=3e-29 Score=249.66 Aligned_cols=206 Identities=23% Similarity=0.315 Sum_probs=159.8
Q ss_pred ceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 81 ~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
+++|+|||||++. +.+.++++++.|++.. +.++|+|+|| |..... .. +
T Consensus 1 ~~iViKlGGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGg-G~~~~~-~~----~----------------- 57 (231)
T cd04254 1 KRVLLKLSGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGG-GNIFRG-AS----A----------------- 57 (231)
T ss_pred CeEEEEeCceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-Cccccc-ch----h-----------------
Confidence 3689999999996 7899999999998643 3467788887 422100 00 0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
..++. .....|++.++||++|+.+++.+|+++|+++.++++.+.+.+
T Consensus 58 --------~~~~~-------------------------~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~ 104 (231)
T cd04254 58 --------AEAGM-------------------------DRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGV 104 (231)
T ss_pred --------hhcCC-------------------------CchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhh
Confidence 00111 111246788899999999999999999999999999875222
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
+ ...+...+ . .+++++.|||++||.|.. .. .+|++|+++|.+|+|+++++||||||
T Consensus 105 ~---------~~~~~~~l----~-~~l~~g~ipV~~g~~G~~----~~------~~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 105 A---------EPYIRRRA----I-RHLEKGRVVIFAGGTGNP----FF------TTDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred h---------cccCHHHH----H-HHHHCCCEEEEECCcCCC----CC------CcHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 1 11122222 2 235678899999987632 11 28999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
||++||+.+|+++++++++|+|+.+ .|++++||.++++|+++|||++|.|+++|+
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~---~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~ 215 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLS---KGLKVMDATAFTLCRDNNLPIVVFNINEPG 215 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHh---cchhhhHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 9999999999999999999999977 488999999999999999999999998875
|
The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be |
| >TIGR02075 pyrH_bact uridylate kinase | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=240.32 Aligned_cols=213 Identities=24% Similarity=0.352 Sum_probs=162.4
Q ss_pred ceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 81 ~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
+++|+|||||++. +.+.++++++.|.+.. +.+.|+|+|| | +-+...
T Consensus 2 ~~iViKlGGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~-G---s~~~~~--------------------- 56 (233)
T TIGR02075 2 KRVLLKLSGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGG-G---NIFRGV--------------------- 56 (233)
T ss_pred CEEEEEeChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECC-C---HHHHHH---------------------
Confidence 3689999999998 5788999999998643 2355666666 3 222111
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
. ++.++. +....|++.++++++++.+|+.+|+++|+++..+++.+.+ .
T Consensus 57 ----~--a~~~~~-------------------------~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~-~ 104 (233)
T TIGR02075 57 ----S--AKELGI-------------------------DRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMP-Q 104 (233)
T ss_pred ----H--HHhcCC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCC-C
Confidence 0 111211 1112478889999999999999999999999999987753 1
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeC-CC
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VD 310 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TD-Vd 310 (557)
+...| ..+ .+.+ +++++.|||++||.|.. .. .+|++|+++|..|+|+.+++||| ||
T Consensus 105 ~~~~~--------~~~----~i~~-ll~~g~VpV~~g~~g~~----~~------s~D~~a~~lA~~l~a~~li~~td~Vd 161 (233)
T TIGR02075 105 ICESY--------IRR----KAIK-HLEKGKVVIFSGGTGNP----FF------TTDTAAALRAIEINADVILKGTNGVD 161 (233)
T ss_pred Ccccc--------CHH----HHHH-HHHCCCEEEEECCCCCC----CC------CchHHHHHHHHHcCCCEEEEeecccC
Confidence 11111 112 2322 45778899999987642 11 28999999999999999999999 99
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
|||++||+.+|+++++++++|+|+.++ |++++||.++++|+++|||++|.|+++|+ ..||+|+
T Consensus 162 Gvy~~dp~~~~~a~~i~~i~~~e~~~~---~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 162 GVYTADPKKNKDAKKYETITYNEALKK---NLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred eEEcCCCCCCCCCeECcEecHHHHHhc---CHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 999999999999999999999998765 88999999999999999999999988774 3577663
|
This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076. |
| >cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.7e-27 Score=231.79 Aligned_cols=195 Identities=22% Similarity=0.299 Sum_probs=155.0
Q ss_pred EEEEecccccCC---HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 83 ~V~KFGGsSv~~---~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
+|+|||||++.+ .+.++++++.|++..+.+++++|+++|..++.+.+..+
T Consensus 2 iViKlGGs~l~~~~~~~~i~~~~~~i~~~~~~~~iiiV~GgG~~a~~~~~~~~--------------------------- 54 (221)
T cd04253 2 IVISLGGSVLAPEKDADFIKEYANVLRKISDGHKVAVVVGGGRLAREYISVAR--------------------------- 54 (221)
T ss_pred EEEEeccceeCCCCChHHHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHH---------------------------
Confidence 699999999998 69999999999875434456667777877776654321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
+++. +....|++...++++|+.+++.+|. .|++++.++
T Consensus 55 -~~~~-------------------------~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~--------------- 92 (221)
T cd04253 55 -KLGA-------------------------SEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS--------------- 92 (221)
T ss_pred -HcCC-------------------------CHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC---------------
Confidence 1111 2234578888899999999998887 777654432
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
...+.+ +++.+.|||++||++ |. + +|++|+++|.+|+|+.+++||||||||++||+.
T Consensus 93 ------~~~~~~-----~l~~g~vpv~~G~~~-----~~-s------~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~ 149 (221)
T cd04253 93 ------YEEALE-----AMFTGKIVVMGGTEP-----GQ-S------TDAVAALLAERLGADLLINATNVDGVYSKDPRK 149 (221)
T ss_pred ------HHHHHH-----HHHcCCeEEEECCCC-----CC-c------cHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCC
Confidence 111221 245778999999863 22 2 799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHc-----CC-CcchHhHHHHHHhCCCCEEEecCCCCC
Q 008693 320 HPHAKPVPYLTFDEAAELAYF-----GA-QVLHPQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~-----Ga-~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
.|+|++|++++++|+.+++.. |. .++|+.+++++.++++|++|.|+.+|+
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~ 205 (221)
T cd04253 150 DPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPE 205 (221)
T ss_pred CCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCcc
Confidence 999999999999999999876 55 689999999999999999999988774
|
The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi |
| >PRK13402 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=244.13 Aligned_cols=227 Identities=19% Similarity=0.319 Sum_probs=173.7
Q ss_pred CCcceEEEEecccccCC------HHHHHHHHHHHHcCC--CCccEEEEcCC--CcCcHHHHHhhHHhhhcCCCcchhhHH
Q 008693 78 EKQLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAM--GKTTNKLLLAGEKAVSCGVTNISCIDE 147 (557)
Q Consensus 78 ~~~~~~V~KFGGsSv~~------~~~~~~va~iI~~~~--~~~~vvVVSA~--gg~Td~L~~~~~~a~~~~~~~~~~~~~ 147 (557)
+.+.++|+||||+++.+ .+.+.++++.|.... +.++|+|+|++ .|. +.|
T Consensus 3 ~~~kriVIKiGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGava~G~-~~l-------------------- 61 (368)
T PRK13402 3 SNWKRIVVKVGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGAVAAGY-HKL-------------------- 61 (368)
T ss_pred CCCcEEEEEEchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCChhhcCc-ccc--------------------
Confidence 34678999999999985 489999999998643 34567777764 222 111
Q ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccce
Q 008693 148 LSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFD 227 (557)
Q Consensus 148 l~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~ 227 (557)
+. . .......++.+.+.|+..+..++..+|+++|+++. |
T Consensus 62 ---------------~~---------------~------~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~a-----q 100 (368)
T PRK13402 62 ---------------GF---------------I------DRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAA-----Q 100 (368)
T ss_pred ---------------CC---------------C------CCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEE-----E
Confidence 00 0 00012345788899999999999999999999983 3
Q ss_pred eEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceee--cCCCcchhHHHHHHHHcCcCcEEE
Q 008693 228 IGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQV 305 (557)
Q Consensus 228 ~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~lA~~L~A~~l~i 305 (557)
+ ++|.+++.+.+ .+.+++..+. .+++.+.|||+.. ++.+++ +++|++|++|+++|.+|+|+.+++
T Consensus 101 v-LlT~~d~~~~~----~y~n~~~~l~-~LL~~g~IPIine-------nD~v~~~el~~GdnD~lAa~vA~~l~Ad~Lii 167 (368)
T PRK13402 101 L-LLTHGDLRDRE----RYINIRNTIN-VLLERGILPIINE-------NDAVTTDRLKVGDNDNLSAMVAALADADTLII 167 (368)
T ss_pred E-EEecchhhhHH----HHHHHHHHHH-HHHHCCcEEEEeC-------CCcEeecccccCChHHHHHHHHHHhCCCEEEE
Confidence 3 56766654322 2334455454 3568899999943 233444 889999999999999999999999
Q ss_pred eeCCCccccCCCCCCCCCccccccCH--HHHHHHH-----HcCCCcchH--hHHHHHHhCCCCEEEecCCCCC-------
Q 008693 306 WKDVDGVLTCDPNIHPHAKPVPYLTF--DEAAELA-----YFGAQVLHP--QSMRPAREGDIPVRVKNSYNPN------- 369 (557)
Q Consensus 306 ~TDVdGV~taDP~~v~~a~~i~~ls~--~Ea~eLa-----~~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~------- 369 (557)
||||||||++||+..|+|++|+++++ +|+.+++ .+|...|+| .++..|.++|+|++|.|..+|+
T Consensus 168 lTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~ 247 (368)
T PRK13402 168 LSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLK 247 (368)
T ss_pred EecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhc
Confidence 99999999999999999999999997 7888876 468899999 5899999999999999998873
Q ss_pred --CCCeeEecCC
Q 008693 370 --APGTLIRRSR 379 (557)
Q Consensus 370 --~~GT~I~~~~ 379 (557)
..||+|.+..
T Consensus 248 g~~~GT~i~~~~ 259 (368)
T PRK13402 248 GQNPGTYFTPEE 259 (368)
T ss_pred CCCCceEEecCC
Confidence 4699997643
|
|
| >TIGR02076 pyrH_arch uridylate kinase, putative | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=226.88 Aligned_cols=196 Identities=23% Similarity=0.247 Sum_probs=152.2
Q ss_pred EEEEecccccCC---HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 83 CVMKFGGSSLAS---AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 83 ~V~KFGGsSv~~---~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
+|+|||||++.+ .+.++++++.|++..+.+++++|+++|..++.+++.+
T Consensus 1 iViKlGGs~l~~~~~~~~i~~i~~~i~~~~~~~~viiV~ggG~~a~~~~~~~---------------------------- 52 (221)
T TIGR02076 1 IVISLGGSVLSPEIDAEFIKEFANILRKLSDEHKVGVVVGGGKTARRYIGVA---------------------------- 52 (221)
T ss_pred CEEEechhhcCCCCCHHHHHHHHHHHHHHHhCCeEEEEECCcHHHHHHHHHH----------------------------
Confidence 489999999988 6999999999987543345666666666555444321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
++++. +....|++...++++|+.++...|+..+++++..+..+
T Consensus 53 ~~~~~-------------------------~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~~~------------ 95 (221)
T TIGR02076 53 RELGA-------------------------SETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENFEE------------ 95 (221)
T ss_pred HHcCC-------------------------CHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCHHH------------
Confidence 11221 23355788888999999999999988888765443211
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
..+ .+..+.+||++||++ |. .+|++|+++|.+|+|+.+++||||||||++||+.
T Consensus 96 ---------~~~-----~l~~g~ipv~~G~~~-----~~-------s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~ 149 (221)
T TIGR02076 96 ---------ALE-----AMSLGKIVVMGGTHP-----GH-------TTDAVAALLAEFSKADLLINATNVDGVYDKDPKK 149 (221)
T ss_pred ---------HHH-----HHHcCCEEEEcCCCC-----CC-------CcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCC
Confidence 111 135678999999862 32 2799999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHH---cCC---CcchHhHHHHHHhCCCCEEEecCCCCC
Q 008693 320 HPHAKPVPYLTFDEAAELAY---FGA---QVLHPQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~---~Ga---~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
+|+|++|++++++|+.+++. +|. .++|+.+++++.+.++|++|.|..+|+
T Consensus 150 ~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~ 205 (221)
T TIGR02076 150 DPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPE 205 (221)
T ss_pred CCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCcc
Confidence 99999999999999999987 333 378999999999999999999988774
|
This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP. |
| >cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-26 Score=230.07 Aligned_cols=224 Identities=18% Similarity=0.286 Sum_probs=172.8
Q ss_pred EEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 83 ~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
.|+|||||++.+++.++++++.|.... ...++|+||++|+.+|.|++....
T Consensus 1 ~ViK~GGs~l~~~~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~--------------------------- 53 (252)
T cd04249 1 LVIKLGGALLETEAALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNF--------------------------- 53 (252)
T ss_pred CEEEEChHHhcChhhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCC---------------------------
Confidence 489999999999989999999998642 346889999999999998864221
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHh-hchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC-
Q 008693 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVS-FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN- 238 (557)
Q Consensus 161 ~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s-~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~- 238 (557)
.. ++.++++. .+....+.+.. +++++|..++++++ ++|++++++++.+.++++.++++.
T Consensus 54 ----~~-----------~~~~g~rv---t~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~~~~~~~ 114 (252)
T cd04249 54 ----PS-----------EKKNGLRV---TPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAVTQLDPE 114 (252)
T ss_pred ----CC-----------EEECCEec---CCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEEEEcCCC
Confidence 00 01112221 24455566544 47899999888765 899999999999998998875542
Q ss_pred ----ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 239 ----ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 239 ----a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
+++.+.+.+.++. +++.+.|||++| +|.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||||+
T Consensus 115 ~~~~G~v~~i~~~~l~~-----ll~~g~ipVi~~-~g~~-~~g~~~~~~---~D~~A~~lA~~l~A~-~i~ltdv~Gv~~ 183 (252)
T cd04249 115 LGAVGKATANDPSLLND-----LLKAGFLPIISS-IGAD-DQGQLMNVN---ADQAATAIAQLLNAD-LVLLSDVSGVLD 183 (252)
T ss_pred CCcccceEEEcHHHHHH-----HHHCCCEEEECC-CEEC-CCCCEeeec---HHHHHHHHHHHcCCC-EEEEeCCcccCC
Confidence 4555555554443 356789999997 6888 479999998 999999999999999 789999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCC
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
.|| +++++++++|+.++...|. ...++.|++.+.+.+++++|.|...|+
T Consensus 184 ~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~ 237 (252)
T cd04249 184 ADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPE 237 (252)
T ss_pred CCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCcc
Confidence 876 5799999999999987543 455667888888888999999877663
|
There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-26 Score=234.00 Aligned_cols=230 Identities=21% Similarity=0.300 Sum_probs=171.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
.++|+|||||++.+++.++.+++.|... .+.++|+|++|++.+++.|.+.+...
T Consensus 15 ~~~ViKlGGs~i~~~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~------------------------ 70 (279)
T cd04250 15 KTVVIKYGGNAMKDEELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIES------------------------ 70 (279)
T ss_pred CEEEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCC------------------------
Confidence 5799999999999998888888888743 23467888888776766665432110
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
.+.++++.+.+.+.+..+++++ | ++|..+ ++.|++.|++++++++.+.++++.+.++.
T Consensus 71 -------------------~~~~g~r~t~~~~~~~~~~~~~-g-~ln~~l-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 128 (279)
T cd04250 71 -------------------EFVNGLRVTDEETMEIVEMVLV-G-KVNKEI-VSLINRAGGKAVGLSGKDGNLIKAKKKDA 128 (279)
T ss_pred -------------------EeECCeecCCHHHHHHHHHHHc-C-chHHHH-HHHHHHcCCCcceeecCCCCEEEEEECcc
Confidence 0111222222212223345555 7 689886 77899999999999999998999877652
Q ss_pred ------------ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEe
Q 008693 239 ------------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVW 306 (557)
Q Consensus 239 ------------a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~ 306 (557)
+++...+...++ .+++.+.|||++| ++.+ ..|++++++ +|.+|+.+|.+|+|+++++|
T Consensus 129 ~~~~~~~~~~~~g~i~~i~~~~i~-----~ll~~g~IPVi~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~A~~li~l 198 (279)
T cd04250 129 TVIEEIIDLGFVGEVTEVNPELLE-----TLLEAGYIPVIAP-VGVG-EDGETYNIN---ADTAAGAIAAALKAEKLILL 198 (279)
T ss_pred cccCCCcccCcccceEEEcHHHHH-----HHHHCCCeEEEcC-CccC-CCCcEEEeC---HHHHHHHHHHHhCCCEEEEE
Confidence 345455554443 3456789999999 6877 478888887 99999999999999999999
Q ss_pred eCCCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC
Q 008693 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN 369 (557)
Q Consensus 307 TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~ 369 (557)
|||||||++||+ ++++|++++++|+.+++..| ...|.++ ++..+.+.|++ ++|.|..+|+
T Consensus 199 tdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~ 263 (279)
T cd04250 199 TDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPH 263 (279)
T ss_pred ECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 999999999984 58999999999999998653 3577776 55666777886 9999887764
|
In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A |
| >PRK00942 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-25 Score=230.19 Aligned_cols=237 Identities=22% Similarity=0.316 Sum_probs=174.3
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+.++|+||||+++.+.+.+..+++.|.... ...++||||++|+.++.+++....
T Consensus 23 ~~~iViK~GGs~l~~~~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~------------------------- 77 (283)
T PRK00942 23 GKTIVIKYGGNAMTDEELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGI------------------------- 77 (283)
T ss_pred CCeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCC-------------------------
Confidence 457999999999999999999998887532 233468899999999988763110
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC--
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~-- 236 (557)
.. ++.++++.+.+.+....+++++ | ++|..++ ++|+++|+++.++++.+.++++.+++
T Consensus 78 ------~~-----------~~~~g~~~t~~~~l~~~~~a~~-G-~l~~~i~-~~L~~~Gv~a~~l~~~~~~~~ta~~~~~ 137 (283)
T PRK00942 78 ------ES-----------EFVNGLRVTDAETMEVVEMVLA-G-KVNKELV-SLINKHGGKAVGLSGKDGGLITAKKLEE 137 (283)
T ss_pred ------Cc-----------EeeCCEecCCHHHHHHHHHHHc-C-chHHHHH-HHHHhCCCCccceeeccCCEEEEEECCC
Confidence 00 0011222211111122345555 7 7888766 78999999999999999999998765
Q ss_pred ----C-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 237 ----T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 237 ----~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
+ .+++...+...+++ +++.|.|||+++ +|.+ .+|++++++ +|++|+.+|.+|+|+++++||||||
T Consensus 138 ~~~~~~~g~i~~i~~~~l~~-----ll~~g~vpVv~~-~~~~-~~g~~~~l~---~D~~A~~lA~~l~A~~li~~tdv~G 207 (283)
T PRK00942 138 DEDLGFVGEVTPVNPALLEA-----LLEAGYIPVISP-IGVG-EDGETYNIN---ADTAAGAIAAALGAEKLILLTDVPG 207 (283)
T ss_pred CCCCccccceEEECHHHHHH-----HHHCCCEEEEcC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCcc
Confidence 2 14455555544433 356789999997 6888 479999997 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHh--HHHHHHhCCC-CEEEecCCCCC----------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDI-PVRVKNSYNPN----------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~I-pv~I~n~~~p~----------~~GT~I~ 376 (557)
||++ +++++++++++|+.+++..|. ..|.|+ ++..+.++|+ +++|.|..+|+ +.||+|.
T Consensus 208 v~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~ 281 (283)
T PRK00942 208 VLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIV 281 (283)
T ss_pred cccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEe
Confidence 9986 488999999999999987642 456665 5555667787 59999876664 3688886
Q ss_pred c
Q 008693 377 R 377 (557)
Q Consensus 377 ~ 377 (557)
+
T Consensus 282 ~ 282 (283)
T PRK00942 282 P 282 (283)
T ss_pred c
Confidence 5
|
|
| >PRK05429 gamma-glutamyl kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-25 Score=235.94 Aligned_cols=229 Identities=23% Similarity=0.374 Sum_probs=168.6
Q ss_pred CcceEEEEecccccCC------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
.|+++|+|||||++.+ .+.++++++.|.+.. +.++|+|+|++ +. .+..
T Consensus 7 ~~~~iVIKiGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa--i~-----~g~~----------------- 62 (372)
T PRK05429 7 DARRIVVKVGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA--VA-----AGRE----------------- 62 (372)
T ss_pred hCCEEEEEeChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH--hh-----hhHh-----------------
Confidence 3678999999999986 789999999998753 23555666542 11 1100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.++... +......++.+.+.||...+.++..+|+++|+++..+ +
T Consensus 63 ----------~l~l~~--------------------~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qi------l 106 (372)
T PRK05429 63 ----------RLGLPE--------------------RPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQI------L 106 (372)
T ss_pred ----------hcCCCC--------------------CCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEE------E
Confidence 011110 0012234578889999999999999999999996542 4
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCce--eecCCCcchhHHHHHHHHcCcCcEEEeeC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI--TTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~--ttlgRgGSD~tAa~lA~~L~A~~l~i~TD 308 (557)
+|.+++.+.. .+-+... +...+++.+.|||+.+ ++.+ ..+++|++|++|+++|.+|+|+.++||||
T Consensus 107 ~t~~d~~~~~----~~ln~~~-~i~~Ll~~g~IPVi~~-------nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTD 174 (372)
T PRK05429 107 LTRDDLEDRE----RYLNARN-TLRTLLELGVVPIINE-------NDTVATDEIKFGDNDTLSALVANLVEADLLILLTD 174 (372)
T ss_pred eehhHhhhhh----HhhhHHH-HHHHHHHCCCEEEEcC-------CCccceecccccChHHHHHHHHHHcCCCEEEEecC
Confidence 6665553211 1111122 2334567889999963 1222 23688999999999999999999999999
Q ss_pred CCccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC---------C
Q 008693 309 VDGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------A 370 (557)
Q Consensus 309 VdGV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~ 370 (557)
|||||++||+.+|++++|+++++ +|+.+++. +|...|+| +++..+.++|+|++|.|+.+|+ .
T Consensus 175 VdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~ 254 (372)
T PRK05429 175 VDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEA 254 (372)
T ss_pred CCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCC
Confidence 99999999999999999999998 68888863 67889999 5889999999999999988774 4
Q ss_pred CCeeEecCC
Q 008693 371 PGTLIRRSR 379 (557)
Q Consensus 371 ~GT~I~~~~ 379 (557)
.||+|.+..
T Consensus 255 ~GT~i~~~~ 263 (372)
T PRK05429 255 VGTLFLPQE 263 (372)
T ss_pred CCEEEeeCC
Confidence 699998653
|
|
| >TIGR00761 argB acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-25 Score=222.80 Aligned_cols=215 Identities=19% Similarity=0.268 Sum_probs=160.2
Q ss_pred eEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
++|+|||||++.++ ++++++.|.... ...++|+||++|+.+|.+++......
T Consensus 1 ~~ViK~GGs~l~~~--~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~------------------------- 53 (231)
T TIGR00761 1 TIVIKIGGAAISDL--LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPP------------------------- 53 (231)
T ss_pred CEEEEEChHHHhcc--HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCC-------------------------
Confidence 47999999999987 889999888542 23346788999999998876422100
Q ss_pred HhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC--
Q 008693 161 ELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT-- 237 (557)
Q Consensus 161 ~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~-- 237 (557)
++.++++ ..++...+.+ .++++++|..+++ .|+++|++++++++.+.+++|.+.+.
T Consensus 54 -----------------~~~~g~r---~t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~~~~~~~ 112 (231)
T TIGR00761 54 -----------------EFKNGLR---VTDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTARSLDKE 112 (231)
T ss_pred -----------------EecCCCc---cCCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEEEECCCc
Confidence 0011111 1122333222 2335588988776 89999999999999998889876543
Q ss_pred ----CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 238 ----NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 238 ----~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
.+++...+.+.+++ +++.+.|||++| +|.+ .+|++++++ +|++|+.+|.+|+|++++|||||||||
T Consensus 113 ~~~~~g~i~~i~~~~i~~-----~l~~g~IPVi~~-~~~~-~~g~~~~l~---sD~~A~~lA~~l~A~~li~ltdv~Gv~ 182 (231)
T TIGR00761 113 DLGYVGEIKKVNKALLEA-----LLKAGYIPVISS-LALT-AEGQALNVN---ADTAAGALAAALGAEKLVLLTDVPGIL 182 (231)
T ss_pred cCCcccceEEEcHHHHHH-----HHHCCCeEEECC-CccC-CCCcEEEeC---HHHHHHHHHHHcCCCEEEEEECCCCee
Confidence 23455555554443 356788999999 5877 479999997 999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC
Q 008693 314 TCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP 359 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip 359 (557)
++||+ ++|++|+++|+.++++.| ...|.|| ++..+.++|++
T Consensus 183 ~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~ 227 (231)
T TIGR00761 183 NGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVK 227 (231)
T ss_pred cCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCC
Confidence 99984 689999999999999876 4678886 66666778876
|
This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model. |
| >cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.2e-25 Score=220.67 Aligned_cols=223 Identities=22% Similarity=0.298 Sum_probs=164.7
Q ss_pred EEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 008693 83 CVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (557)
Q Consensus 83 ~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (557)
+|+||||+++.+++.++++++.|.... ...++|||+++|+.+|.+++......+
T Consensus 1 ~ViKlGGs~l~~~~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~------------------------- 55 (256)
T cd04238 1 VVIKYGGSAMKDEELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESE------------------------- 55 (256)
T ss_pred CEEEEChHHhcCccHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCE-------------------------
Confidence 489999999999999999999887532 233466779999999998864321100
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhhccCCCHHH---HHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC--
Q 008693 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRS---RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (557)
Q Consensus 162 l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~---~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~-- 236 (557)
+.+++ +..+++. .++.++ | ++|..+ .++|+++|++++++++.+.++++++.+
T Consensus 56 -----------------~~~~~---r~t~~~~l~~~~~a~~-g-~ln~~i-~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~ 112 (256)
T cd04238 56 -----------------FVNGL---RVTDKETMEIVEMVLA-G-KVNKEL-VSLLNRAGGKAVGLSGKDGGLIKAEKKEE 112 (256)
T ss_pred -----------------eECCe---ecCCHHHHHHHHHHHc-C-chHHHH-HHHHHhCCCCCCCcccccCCEEEEEECCC
Confidence 00011 1112222 234444 7 889986 778999999999999999889988653
Q ss_pred -----C-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 237 -----T-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 237 -----~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
+ .+++...+.+.+.. +++.+.|||++| ++.+ .+|++++++ +|++|+.+|.+|+|+++++|||||
T Consensus 113 ~~~~~~~~g~i~~i~~~~l~~-----ll~~g~ipVv~~-~~~~-~~g~~~~~~---~D~~A~~lA~~l~a~~li~ltdv~ 182 (256)
T cd04238 113 KDIDLGFVGEVTEVNPELLET-----LLEAGYIPVIAP-IAVD-EDGETYNVN---ADTAAGAIAAALKAEKLILLTDVP 182 (256)
T ss_pred CCCCcccccceEEECHHHHHH-----HHHCCCEEEECC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEeCCc
Confidence 1 14555555554443 356789999998 6877 479999997 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCC-CEEEecCCCCC
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (557)
|||++ +++++++++++|+.++...+ ...|.|+ ++..+.+.++ +++|.|...|+
T Consensus 183 Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~ 240 (256)
T cd04238 183 GVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPH 240 (256)
T ss_pred cccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCc
Confidence 99987 27899999999999998633 2566665 4555566666 59999877663
|
Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >PLN02418 delta-1-pyrroline-5-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-24 Score=245.17 Aligned_cols=239 Identities=18% Similarity=0.267 Sum_probs=177.1
Q ss_pred CcceEEEEecccccCCHH------HHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~------~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
.|+++|+|||||||.+.+ +|++++++|.+. .+.++|+|+||+.+.|+.++...+..
T Consensus 14 ~~~~iViK~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~---------------- 77 (718)
T PLN02418 14 DVKRVVIKVGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLV---------------- 77 (718)
T ss_pred hCCEEEEEeCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhh----------------
Confidence 467899999999999988 999999999853 34568999999999999988753311
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
+++..+ + .+......+..++|+||.+++.+++.+|+++|++ ++|+ +
T Consensus 78 ---------~~~~~~-----------------~--~~~~~~~~~qa~aa~Gq~~l~~~~~~~f~~~g~~-----~~qi-l 123 (718)
T PLN02418 78 ---------NSSFAD-----------------L--QKPQMELDGKACAAVGQSELMALYDTLFSQLDVT-----ASQL-L 123 (718)
T ss_pred ---------hccccc-----------------C--CCCcchHHHHHHHHhhHHHHHHHHHHHHHHcCCe-----EEEE-E
Confidence 000000 0 0000111223789999999999999999999994 5666 7
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCC---------CcchhHHHHHHHHcCcC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---------GGSDLTATTIGKALGLQ 301 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgR---------gGSD~tAa~lA~~L~A~ 301 (557)
+|+++|.+.+. +.+..+.+. .+++.+.|||+.| ++.+++..+ +++|++|+++|.+++|+
T Consensus 124 lT~~~~~~~~~----~~~~~~~l~-~ll~~g~iPVv~~-------nd~v~~~~~~~~~~~~~~~d~D~~A~~lA~~l~Ad 191 (718)
T PLN02418 124 VTDSDFRDPDF----RKQLSETVE-SLLDLRVIPIFNE-------NDAVSTRRAPYEDSSGIFWDNDSLAALLALELKAD 191 (718)
T ss_pred ecHhHhcchhH----hHhHHHHHH-HHHHCCCEEEEcC-------CCCccccccccccccCeecCcHHHHHHHHHHcCCC
Confidence 88888876543 223334444 3567889999955 344444422 26999999999999999
Q ss_pred cEEEeeCCCccccCCCCCCCCCccccccCHHHHHH-HHH-----cCCCcchHh--HHHHHHhCCCCEEEecCCCCC----
Q 008693 302 EIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAE-LAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---- 369 (557)
Q Consensus 302 ~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~e-La~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---- 369 (557)
.++|||||||||++||+ .|++++|++++..+... +.. .|...|.|| ++..+.++|+|++|.|...|+
T Consensus 192 ~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l~~ 270 (718)
T PLN02418 192 LLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNIRK 270 (718)
T ss_pred EEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchHHH
Confidence 99999999999999998 59999999998765433 222 246688885 888999999999999987774
Q ss_pred -----CCCeeEecCCC
Q 008693 370 -----APGTLIRRSRD 380 (557)
Q Consensus 370 -----~~GT~I~~~~~ 380 (557)
..||+|.+...
T Consensus 271 ~l~g~~~GT~i~~~~~ 286 (718)
T PLN02418 271 VLRGERVGTLFHQDAH 286 (718)
T ss_pred HhcCCCCceEeccccc
Confidence 47999987543
|
|
| >TIGR01027 proB glutamate 5-kinase | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=226.29 Aligned_cols=225 Identities=22% Similarity=0.383 Sum_probs=164.4
Q ss_pred eEEEEecccccCCHH------HHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHH
Q 008693 82 TCVMKFGGSSLASAE------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (557)
Q Consensus 82 ~~V~KFGGsSv~~~~------~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (557)
.+|+|||||++.+.+ .++++++.|.+.. +.++|+|+|++ ... +..
T Consensus 2 riVIKiGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~--~~~-----g~~-------------------- 54 (363)
T TIGR01027 2 RIVVKVGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGA--IAA-----GFE-------------------- 54 (363)
T ss_pred eEEEEeccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcH--Hhc-----Ccc--------------------
Confidence 589999999999754 4899999988643 23455666533 210 000
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEe
Q 008693 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (557)
Q Consensus 154 ~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (557)
.++... +......++.+.+.|+..+..++...|.++|+++ .++ ++|.
T Consensus 55 -------~lg~~~--------------------~~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~-----aqi-llt~ 101 (363)
T TIGR01027 55 -------ALGLPE--------------------RPKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKV-----AQI-LLTR 101 (363)
T ss_pred -------ccCCCC--------------------CccchHHHHHHHHhChHHHHHHHHHHHHHcCCeE-----EEE-EEec
Confidence 011110 0111234577899999999999999999999986 333 6777
Q ss_pred cCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCce--eecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI--TTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 234 ~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~--ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
++|.+.. .+.+....+. .+++.+.|||+.- ++.+ +.+++|++|++|+++|.+|+|+.++|||||||
T Consensus 102 ~d~~~~~----~~lna~~~i~-~Ll~~g~iPVi~e-------nd~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdG 169 (363)
T TIGR01027 102 ADFSDRE----RYLNARNTLE-ALLELGVVPIINE-------NDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDG 169 (363)
T ss_pred cchhhHH----HHHHHHHHHH-HHHhCCCEEEEeC-------CCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 7665422 1222223333 4567889999952 2222 45788999999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHH--HHHHHH-----HcCCCcchHh--HHHHHHhCCCCEEEecCCCCC---------CCCe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFD--EAAELA-----YFGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------APGT 373 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~--Ea~eLa-----~~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~GT 373 (557)
||++||+..|+|++|+++++. +..+++ .+|...|+|| ++..|.++|+|++|.|..+|+ ..||
T Consensus 170 Vy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT 249 (363)
T TIGR01027 170 LYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGT 249 (363)
T ss_pred ccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcE
Confidence 999999999999999999974 555665 4788899998 889999999999999998874 3599
Q ss_pred eEecC
Q 008693 374 LIRRS 378 (557)
Q Consensus 374 ~I~~~ 378 (557)
+|.+.
T Consensus 250 ~i~~~ 254 (363)
T TIGR01027 250 LFHAQ 254 (363)
T ss_pred EEeeC
Confidence 99764
|
Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family. |
| >COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-24 Score=205.94 Aligned_cols=207 Identities=24% Similarity=0.369 Sum_probs=162.2
Q ss_pred ceEEEEecccccCC-------HHHHHHHHHHHHcCCC-CccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHH
Q 008693 81 LTCVMKFGGSSLAS-------AERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (557)
Q Consensus 81 ~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~~-~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~ 152 (557)
+.+|.|+||+.+.. ++.++++++.|++..+ +..|.||-++|.+-.......
T Consensus 6 ~rillkLsGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~--------------------- 64 (238)
T COG0528 6 MRILLKLSGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAA--------------------- 64 (238)
T ss_pred EEEEEEeecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHH---------------------
Confidence 55899999999975 5899999999988643 345555556666644332210
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEE
Q 008693 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (557)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (557)
.|. +....|++..++.++|+.+|...|++.|++++.+++...+.+.
T Consensus 65 ---------~g~-------------------------~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~~ 110 (238)
T COG0528 65 ---------AGM-------------------------DRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVA 110 (238)
T ss_pred ---------cCC-------------------------chhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCcccc
Confidence 011 3446699999999999999999999999999999876542111
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeC-CCc
Q 008693 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (557)
Q Consensus 233 ~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TD-VdG 311 (557)
. ++..++..++ ++++.|+|++|..|.. |.+ +|++|+++|..++||-++.-|+ |||
T Consensus 111 -e------------~~~~~~A~~~-l~~grVvIf~gGtg~P---~fT-------TDt~AALrA~ei~ad~ll~atn~VDG 166 (238)
T COG0528 111 -E------------PYSRREAIRH-LEKGRVVIFGGGTGNP---GFT-------TDTAAALRAEEIEADVLLKATNKVDG 166 (238)
T ss_pred -C------------ccCHHHHHHH-HHcCCEEEEeCCCCCC---CCc-------hHHHHHHHHHHhCCcEEEEeccCCCc
Confidence 1 1112223333 4678999999865532 555 8999999999999999999995 999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
||++||+++|+|+++++|||+|+.++ +.+||+|-|+..+++++||++|.|.++|.
T Consensus 167 VY~~DPkk~pdA~~~~~Lty~e~l~~---~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~ 221 (238)
T COG0528 167 VYDADPKKDPDAKKYDTLTYDEVLKI---GLKVMDPTAFSLARDNGIPIIVFNINKPG 221 (238)
T ss_pred eeCCCCCCCCCceecccCCHHHHHHh---cCeeecHHHHHHHHHcCCcEEEEeCCCCc
Confidence 99999999999999999999999988 57999999999999999999999977764
|
|
| >PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.3e-24 Score=214.70 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=139.7
Q ss_pred CCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC----------------CCC-ceeeecchHHHH
Q 008693 189 LTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD----------------FTN-ADILEATYPAVA 250 (557)
Q Consensus 189 ~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~----------------~~~-a~i~~~~~~~v~ 250 (557)
.+++..+.+ .++| ++|..+++ +|+++|++|+++++.+.++++.+. ++. +++...+.+.++
T Consensus 66 t~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~ 143 (268)
T PRK14058 66 TDRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLK 143 (268)
T ss_pred CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHH
Confidence 356666664 6888 99999886 899999999999999988876431 111 455555555444
Q ss_pred HHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 251 KRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 251 ~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
. +++.+.|||++|+ +.+ .+|+.++++ +|++|+.+|.+|+|++++|||||||||++||+ +++++++++
T Consensus 144 ~-----ll~~g~iPVi~~~-~~~-~~g~~~~i~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~ 210 (268)
T PRK14058 144 L-----LLKAGYLPVVAPP-ALS-EEGEPLNVD---GDRAAAAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERIT 210 (268)
T ss_pred H-----HHHCCCEEEEeCc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcC
Confidence 3 3567899999996 555 478888886 99999999999999999999999999999994 588999999
Q ss_pred HHHHHHHHHcCCCcchHh--HHHHHHhCCC-CEEEecCCCCC-------CCCeeEec
Q 008693 331 FDEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN-------APGTLIRR 377 (557)
Q Consensus 331 ~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~-------~~GT~I~~ 377 (557)
++|+.++..+....|.|| ++..+.++|+ +++|.|..+|+ +.||+|.+
T Consensus 211 ~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~GT~I~~ 267 (268)
T PRK14058 211 PEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGEGTVIVN 267 (268)
T ss_pred HHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCCceEEec
Confidence 999999987777788887 6667778899 79999887774 35999865
|
|
| >PRK14556 pyrH uridylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=209.15 Aligned_cols=214 Identities=21% Similarity=0.295 Sum_probs=163.6
Q ss_pred ceEEEEecccccCC-------HHHHHHHHHHHHcCCC--CccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 81 LTCVMKFGGSSLAS-------AERMREVAELILSFPN--ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 81 ~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~~--~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
+.+|.|.+|..+.. ++.++++++.|++..+ .+..||| +.|.+-.-.
T Consensus 16 ~rvllKlsGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVv-GGGni~Rg~------------------------ 70 (249)
T PRK14556 16 KRILLKLSGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVV-GGGNILRGG------------------------ 70 (249)
T ss_pred CEEEEEEehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEE-CCCHHHhCc------------------------
Confidence 46899999999974 4789999999987543 4555666 445443210
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
...++ ...+....|++..++.++|+.+|..+|++.|++++.+++-..
T Consensus 71 -------~~~~~-----------------------~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~--- 117 (249)
T PRK14556 71 -------RANFG-----------------------NKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGV--- 117 (249)
T ss_pred -------hhhcc-----------------------CCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeecccc---
Confidence 00000 012345679999999999999999999999999999987432
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
..+ +++. ++++ ..+. +++|.|+|++|+.|.. ..+ +|++|+++|..++|+.+++||||||
T Consensus 118 --~~~--~e~~--~~~~----~~~~-l~~g~vvi~~gg~G~p----~~S------tD~lAallA~~l~Ad~Lii~TdVDG 176 (249)
T PRK14556 118 --DGL--LKVA--SAHE----FNQE-LAKGRVLIFAGGTGNP----FVT------TDTTASLRAVEIGADALLKATTVNG 176 (249)
T ss_pred --CcC--CCCC--CHHH----HHHH-HhCCCEEEEECCCCCC----cCC------cHHHHHHHHHHcCCCEEEEEeCCCc
Confidence 111 2221 2332 3332 4678899989987742 233 8999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
||++||+++|+|+++++++|+|+.+. +.+++++.++++|+++|||++|.|..+|+ ..||+|.
T Consensus 177 VYd~DP~~~p~A~~i~~I~~~e~~~~---~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~ 247 (249)
T PRK14556 177 VYDKDPNKYSDAKRFDKVTFSEVVSK---ELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVT 247 (249)
T ss_pred cCCCCCCCCCCceEeeEEchhhhccc---chHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEE
Confidence 99999999999999999999998774 66899999999999999999999988874 4688774
|
|
| >cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-22 Score=199.73 Aligned_cols=148 Identities=21% Similarity=0.260 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeec
Q 008693 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (557)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttl 282 (557)
+++.. +.++|.++|+++.++++.++ +.+. ..++...+.+.+.+ +++.+.|||++|+.+.+ .+|.+.++
T Consensus 80 ~ln~~-~~~~l~~~g~~a~~l~~~~~-~~~~----~g~~~~~~~~~l~~-----ll~~g~iPVi~~~~~~~-~~~~~~~~ 147 (252)
T cd04241 80 ELNSI-VVDALLEAGVPAVSVPPSSF-FVTE----NGRIVSFDLEVIKE-----LLDRGFVPVLHGDVVLD-EGGGITIL 147 (252)
T ss_pred HHHHH-HHHHHHHCCCCeEEEChHHe-EEec----CCeeeeecHHHHHH-----HHhCCCEEEEcCCeEec-CCCCeEEe
Confidence 66764 56679999999999999986 3332 23444444443332 35788999999988777 36777777
Q ss_pred CCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHc-------CCCcchHh--HHHHH
Q 008693 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF-------GAQVLHPQ--SMRPA 353 (557)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~-------Ga~vlhp~--a~~~a 353 (557)
+ +|++|+.+|.+|+|+++++||||||||++|| |+++++++++++|+.++... ....|.|| ++..+
T Consensus 148 ~---~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a 221 (252)
T cd04241 148 S---GDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLEL 221 (252)
T ss_pred C---hHHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHH
Confidence 6 9999999999999999999999999999999 89999999999998888652 33567776 66777
Q ss_pred HhCCCCEEEecCCCC
Q 008693 354 REGDIPVRVKNSYNP 368 (557)
Q Consensus 354 ~~~~Ipv~I~n~~~p 368 (557)
.++|++++|.|..+|
T Consensus 222 ~~~Gv~v~I~~g~~~ 236 (252)
T cd04241 222 ARRGIEVYIFNGDKP 236 (252)
T ss_pred HhcCCeEEEEeCCCH
Confidence 789999999988766
|
Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >PLN02512 acetylglutamate kinase | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.9e-22 Score=203.86 Aligned_cols=227 Identities=20% Similarity=0.292 Sum_probs=159.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
.++|.||||+++.+.+..+.+.+.|.... +.++|+| .++|...+.+++.
T Consensus 48 ~tiVIKlGGs~i~d~~~~~~~~~di~~l~~~g~~iVlV-HGgG~~i~~~~~~---------------------------- 98 (309)
T PLN02512 48 KTVVVKYGGAAMKDPELKAGVIRDLVLLSCVGLRPVLV-HGGGPEINSWLKK---------------------------- 98 (309)
T ss_pred CeEEEEECCeeccChhHHHHHHHHHHHHHHCCCCEEEE-ECCcHHHHHHHHH----------------------------
Confidence 56999999999998776666666665322 2344545 4555555554431
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-h-hchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-S-FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~-s-~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
++.++ ++.+|++.+ ++...+.+. . .| .+|..+. ++|+++|++++++++.+.++++.+.+
T Consensus 99 ---~gi~~-----------~~~~G~rvT---~~~~lei~~~~l~g-~ln~~lv-~~L~~~Gv~av~l~g~d~~~i~a~~~ 159 (309)
T PLN02512 99 ---VGIEP-----------QFKNGLRVT---DAETMEVVEMVLVG-KVNKSLV-SLINKAGGTAVGLSGKDGRLLRARPS 159 (309)
T ss_pred ---cCCCC-----------cCCCCCcCC---CHHHHHHHHHHHhh-HHHHHHH-HHHHHcCCCeEEeehhhCCEEEEEEc
Confidence 11111 112233222 333333331 1 24 6677755 57999999999999999889988765
Q ss_pred CC-------ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 237 TN-------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 237 ~~-------a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
.+ .++...+.+.++ .+++.+.|||++|+ +.+ .+|+.++++ +|.+|+.+|.+|+|+++++||||
T Consensus 160 ~~~~~~~~~G~i~~v~~~~i~-----~lL~~g~IPVi~~~-~~d-~~g~~~~i~---~D~~A~~lA~~L~Ad~li~lTdV 229 (309)
T PLN02512 160 PNSADLGFVGEVTRVDPTVLR-----PLVDDGHIPVIATV-AAD-EDGQAYNIN---ADTAAGEIAAALGAEKLILLTDV 229 (309)
T ss_pred CcCccccccceeeecCHHHHH-----HHHhCCCEEEEeCc-eEC-CCCCEeccC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 32 344455555443 34578899999995 777 478888886 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNP 368 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p 368 (557)
||||++|| +++++|++++++|+.++...| ...|.|| ++..+.+.|++ ++|.|...|
T Consensus 230 ~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~ 290 (309)
T PLN02512 230 AGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVP 290 (309)
T ss_pred cceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCC
Confidence 99999875 358999999999999998543 3678887 45556678996 899887665
|
|
| >COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.4e-22 Score=199.47 Aligned_cols=230 Identities=23% Similarity=0.336 Sum_probs=173.7
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
+.+.|.|+||+.|.+.+.+..+++.|..+. +.++|||+ +.|..-|++++.
T Consensus 2 ~k~~VIK~GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVH-Gggp~I~~~l~~--------------------------- 53 (265)
T COG0548 2 GKTIVIKLGGSAMEDENLLEAFASDIALLKSVGIRPVVVH-GGGPQIDEMLAK--------------------------- 53 (265)
T ss_pred CceEEEEECceeecCchHHHHHHHHHHHHHHCCCcEEEEe-CCchHHHHHHHH---------------------------
Confidence 467999999999999998999999876543 45775555 445544444331
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
++.++ ++.+|++++.+.+.....++ ++-.+|..|.+ .|+..|.+++.+++.|.++++.....
T Consensus 54 ----~gie~-----------~f~~glRvTd~~tlevv~mv--l~G~vNk~iva-~l~~~g~~avGlsg~Dg~li~A~~~~ 115 (265)
T COG0548 54 ----LGIEP-----------EFVKGLRVTDAETLEVVEMV--LGGTVNKEIVA-RLSKHGGQAVGLSGVDGNLVTAKKLD 115 (265)
T ss_pred ----cCCCC-----------eeeCCEEcCCHHHHHHHHHH--HHHHHHHHHHH-HHHHhCCcceeeeecCCCEEEEEEcc
Confidence 22222 24556655544444443444 34477888665 69999999999999998899876432
Q ss_pred C---------ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeC
Q 008693 238 N---------ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD 308 (557)
Q Consensus 238 ~---------a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TD 308 (557)
. .++.+++++.+ ..+++++.|||+++ +|.+ .+|++.|++ +|++|+.+|.+|+|++++++||
T Consensus 116 ~~~~id~g~vG~i~~Vn~~~i-----~~ll~~~~IpViap-ia~~-~~G~~~Nvn---aD~~A~~iA~aLkAekLi~ltd 185 (265)
T COG0548 116 VDDGVDLGYVGEIRKVNPELI-----ERLLDNGAIPVIAP-IAVD-EDGETLNVN---ADTAAGALAAALKAEKLILLTD 185 (265)
T ss_pred cccccccceeeeEEEECHHHH-----HHHHhCCCceEEec-ceEC-CCCcEEeeC---HHHHHHHHHHHcCCCeEEEEeC
Confidence 2 34555665533 34467889999999 7888 589999999 9999999999999999999999
Q ss_pred CCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCC-CEEEecCCCCC
Q 008693 309 VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (557)
Q Consensus 309 VdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (557)
|+|||+.+|+ .+.+++++.+|+.+|...| ...|.|+ +..-|.+.|+ +++|.|...|.
T Consensus 186 v~Gvl~~~~~----~s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~ 247 (265)
T COG0548 186 VPGVLDDKGD----PSLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPH 247 (265)
T ss_pred CcccccCCCC----ceeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcc
Confidence 9999998875 2789999999999999987 4678886 7778889999 59998877664
|
|
| >CHL00202 argB acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.4e-21 Score=200.28 Aligned_cols=235 Identities=17% Similarity=0.249 Sum_probs=165.9
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
.+.|.|+||+.+.+....+.+++.|.... ...++|+|++.|..-+.+++.
T Consensus 24 ~~~VIk~gG~~~~~~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~----------------------------- 74 (284)
T CHL00202 24 RIMVIKYGGAAMKNLILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQ----------------------------- 74 (284)
T ss_pred CeEEEEEChHHhcCcchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHH-----------------------------
Confidence 57999999999988666667777776542 233455556656544444331
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHh-hchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC--
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVS-FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF-- 236 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s-~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~-- 236 (557)
++.++ ++++|++.+ ++.+.+.+.. +--.++..++ ++|++.|++++++++.+.++++...+
T Consensus 75 --~g~~~-----------~~~~G~rvT---~~~~l~~~~~~l~g~ln~~lv-~~L~~~Gv~av~l~~~d~~~i~a~~~~~ 137 (284)
T CHL00202 75 --LNISP-----------KFWNGIRVT---DKVTMEIVEMVLAGKVNKDLV-GSINANGGKAVGLCGKDANLIVARASDK 137 (284)
T ss_pred --CCCCC-----------EeECCcccC---CHHHHHHHHHHHhhHHHHHHH-HHHHhCCCCeeeeeeccCCEEEEEeCCC
Confidence 12111 123444433 3444443321 2226788765 56899999999999999888886543
Q ss_pred ---CC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcc
Q 008693 237 ---TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (557)
Q Consensus 237 ---~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV 312 (557)
+. .++...+.+.++. +++.+.|||++|+ +.+ ..|++++++ +|++|+.+|.+|+|++++||||||||
T Consensus 138 ~d~~~~G~i~~v~~~~i~~-----ll~~g~iPVi~~~-~~~-~~g~~~ni~---~D~~A~~lA~~l~Ad~li~lTdv~Gv 207 (284)
T CHL00202 138 KDLGLVGEIQQVDPQLIDM-----LLEKNYIPVIASV-AAD-HDGQTYNIN---ADVVAGEIAAKLNAEKLILLTDTPGI 207 (284)
T ss_pred cccccceeEEecCHHHHHH-----HHHCCCEEEECCC-ccC-CCCcEEecC---HHHHHHHHHHHhCCCEEEEEeCChhh
Confidence 22 4455555554443 4567899999995 777 479999997 99999999999999999999999999
Q ss_pred ccC--CCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCeeE
Q 008693 313 LTC--DPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI 375 (557)
Q Consensus 313 ~ta--DP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I 375 (557)
|++ || .+++++++++|+.++...| ...|.|| +...+.++|++ ++|.|..+|+ +.||+|
T Consensus 208 ~~~~~d~-----~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i 282 (284)
T CHL00202 208 LADINDP-----NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSML 282 (284)
T ss_pred cCCCCCC-----CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEE
Confidence 984 44 3799999999999998764 3578887 55667788987 7898877764 357877
Q ss_pred e
Q 008693 376 R 376 (557)
Q Consensus 376 ~ 376 (557)
.
T Consensus 283 ~ 283 (284)
T CHL00202 283 V 283 (284)
T ss_pred e
Confidence 4
|
|
| >cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-20 Score=188.54 Aligned_cols=207 Identities=20% Similarity=0.270 Sum_probs=143.0
Q ss_pred cceEEEEecccccCC--HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~--~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
+.++|.|+|||.+.+ .+.++++++.|++..+...+++|++.|....... .
T Consensus 30 ~~~~ViKiGGSvitdk~~~~i~~la~~i~~~~~~~~vilV~GGG~~~r~~~----------------------------~ 81 (262)
T cd04255 30 PDLNVVKIGGQSIIDRGAEAVLPLVEEIVALRPEHKLLILTGGGTRARHVY----------------------------S 81 (262)
T ss_pred CCcEEEEeccceecCCcHHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHH----------------------------H
Confidence 356999999999954 5789999999987654445555554443221111 0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
....++. +....|++...-..+|+.++...|...|+++. +..
T Consensus 82 ~~~~~g~-------------------------~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i----------~~~--- 123 (262)
T cd04255 82 IGLDLGM-------------------------PTGVLAKLGASVSEQNAEMLATLLAKHGGSKV----------GHG--- 123 (262)
T ss_pred HHHHcCC-------------------------CchHHHHHHHHHHHHHHHHHHHHHHHcCCCcc----------ccc---
Confidence 1111222 22234445444457888877777888888652 111
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCc------chhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG------SDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgG------SD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
+... +. .+++.+.|||+.|+.+.+ ..++++|+| +|++|+++|.+|+|+.+++||||||
T Consensus 124 -------~~~~----l~-~lL~~g~vPVi~g~~~~~----~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdG 187 (262)
T cd04255 124 -------DLLQ----LP-TFLKAGRAPVISGMPPYG----LWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDG 187 (262)
T ss_pred -------cHHH----HH-HHHHCCCeEEEeCCcCCC----eeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCe
Confidence 1112 22 235788999999997643 345667666 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCC--CCEEEecCCCCC
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGD--IPVRVKNSYNPN 369 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~--Ipv~I~n~~~p~ 369 (557)
||++||+.+|+|++|++++++|+.++.. +..++...+...++..+ +|++|.|..+|+
T Consensus 188 Vy~~dP~~~~~a~~i~~i~~~~~~~~~~-~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~ 246 (262)
T cd04255 188 LYTADPKKNKKAEFIPEISAAELLKKDL-DDLVLERPVLDLLQNARHVKEVQIVNGLVPG 246 (262)
T ss_pred eECCCCCCCCCCeEccEeCHHHHHHHhc-CCCCCcHHHHHHHHHhCCCCcEEEEeCCCCC
Confidence 9999999999999999999999888752 23356666555555333 699999987774
|
The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK). |
| >cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC) | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.7e-20 Score=186.49 Aligned_cols=221 Identities=19% Similarity=0.282 Sum_probs=159.3
Q ss_pred EEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHHh
Q 008693 83 CVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDEL 162 (557)
Q Consensus 83 ~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~l 162 (557)
+|.||||+.+.+. +++++.|... +. ++|+|+++|...+.+++..
T Consensus 1 ~VIKlGGs~l~~~---~~~~~~i~~l-g~-~~VlVHGgg~~i~~~~~~~------------------------------- 44 (257)
T cd04251 1 IVVKIGGSVVSDL---DKVIDDIANF-GE-RLIVVHGGGNYVNEYLKRL------------------------------- 44 (257)
T ss_pred CEEEEChHHhhCh---HHHHHHHHHc-CC-CEEEECCCHHHHHHHHHHc-------------------------------
Confidence 4899999999864 5677777765 33 4777788887666655421
Q ss_pred CCCHHHHHHHHHHHHHHH---HhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC---
Q 008693 163 GIDRSIIATHLEELEQLL---KGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF--- 236 (557)
Q Consensus 163 ~~~~~~i~~~~~~l~~~l---~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~--- 236 (557)
+++. +++ +|+. .+-.+++..+.+....+.+|..+++ .|+++|++++.+++.+.++++.+.+
T Consensus 45 gi~~-----------~~~~~~~G~~-~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~~~~~~~~~~~ 111 (257)
T cd04251 45 GVEP-----------KFVTSPSGIR-SRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGRLLEAKRKEIV 111 (257)
T ss_pred CCCc-----------EEEeCCCCCc-cccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCCEEEEEEeecc
Confidence 1111 001 0100 0123456666665444899999766 8999999999999999877765533
Q ss_pred -----C---------CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCc
Q 008693 237 -----T---------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQE 302 (557)
Q Consensus 237 -----~---------~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~ 302 (557)
+ .+++...+.+.++. +++++.|||+++| +.+ .+|++++++ +|++|+.+|.+|+|++
T Consensus 112 ~~~~~~~~~~~d~~~~G~v~~v~~~~i~~-----ll~~g~vpVi~~~-~~~-~~G~~~~i~---~D~~A~~lA~~L~A~~ 181 (257)
T cd04251 112 RVNERGRKMIIRGGYTGKVEKVNSDLIEA-----LLDAGYLPVVSPV-AYS-EEGEPLNVD---GDRAAAAIAAALKAER 181 (257)
T ss_pred cccccCcccccCCcceEEEEEEcHHHHHH-----HHhCCCeEEEeCc-EEC-CCCcEEecC---HHHHHHHHHHHcCCCE
Confidence 1 02444455554433 3578899999986 445 379999997 9999999999999999
Q ss_pred EEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCC-CEEEecCCCCC
Q 008693 303 IQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDI-PVRVKNSYNPN 369 (557)
Q Consensus 303 l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~I-pv~I~n~~~p~ 369 (557)
+++||||||||++ ++++++++++|+.++...-...|.|+ ++..+.++|+ .++|.|...|+
T Consensus 182 li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~ 244 (257)
T cd04251 182 LILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADS 244 (257)
T ss_pred EEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCcc
Confidence 9999999999973 78999999999999986555667775 6777778888 58888877764
|
This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.2e-19 Score=180.39 Aligned_cols=169 Identities=16% Similarity=0.227 Sum_probs=128.1
Q ss_pred HHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCccc
Q 008693 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273 (557)
Q Consensus 194 ~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~ 273 (557)
+..+.+.|+..-..+....|..+|+++ .|+ ++|.++|.+.+. +.+..+.+. .+++.+.|||+.|+=...
T Consensus 94 ~qa~aa~gq~~L~~~y~~~f~~~~~~~-----~q~-llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVi~~nD~v~ 162 (284)
T cd04256 94 GRACAAVGQSGLMALYEAMFTQYGITV-----AQV-LVTKPDFYDEQT----RRNLNGTLE-ELLRLNIIPIINTNDAVS 162 (284)
T ss_pred HHHHHHcccHHHHHHHHHHHHHcCCcH-----HHe-eeeccccccHHH----HHHHHHHHH-HHHHCCCEEEEeCCCccc
Confidence 456788999999999999999999875 666 888888876553 223344443 456889999998632211
Q ss_pred C-----CCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHH-----cCCC
Q 008693 274 W-----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQ 343 (557)
Q Consensus 274 ~-----~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~-----~Ga~ 343 (557)
. .+|+.. .--+++|+.|+.+|.+++|+.++++|||||||++||+ .|++++|++++.+|..++++ .|..
T Consensus 163 ~~~~~~~~~~~~-~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtG 240 (284)
T cd04256 163 PPPEPDEDLQGV-ISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTG 240 (284)
T ss_pred cccccccccccc-ccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccC
Confidence 0 011111 1124699999999999999999999999999999997 59999999999988776643 2567
Q ss_pred cchHh--HHHHHHhCCCCEEEecCCCCC---------CCCeeE
Q 008693 344 VLHPQ--SMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (557)
Q Consensus 344 vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (557)
.|.|| ++..+.++|++++|.|..+|+ ..||+|
T Consensus 241 GM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~ 283 (284)
T cd04256 241 GMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFF 283 (284)
T ss_pred CcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEe
Confidence 89886 888899999999999987774 357766
|
G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. |
| >TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-19 Score=204.31 Aligned_cols=236 Identities=17% Similarity=0.282 Sum_probs=162.2
Q ss_pred cceEEEEecccccCCHH------HHHHHHHHHHcC--CCCccEEEEc---CCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 80 QLTCVMKFGGSSLASAE------RMREVAELILSF--PNERPVIVLS---AMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~------~~~~va~iI~~~--~~~~~vvVVS---A~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
.+.+|.|||||++.+.+ .+.++++.|... .+.+.|+|+| |+|..+..+.+..... .
T Consensus 7 ~~~iViKiGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~----~--------- 73 (715)
T TIGR01092 7 VKRIVVKVGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSS----F--------- 73 (715)
T ss_pred CCEEEEEeCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhcccc----c---------
Confidence 46799999999998765 899999998863 2456677788 6666655443211000 0
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEecccee
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI 228 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~ 228 (557)
. ...+..+...+..+.+.|+..-..+....|..+++. +.|+
T Consensus 74 ----------------~------------------~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~i~-----~aQ~ 114 (715)
T TIGR01092 74 ----------------A------------------DLQKPQPELDGKACAAVGQSGLMALYETMFTQLDIT-----AAQI 114 (715)
T ss_pred ----------------c------------------ccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCCe-----eEEE
Confidence 0 000011122233345556554455555566666665 4666
Q ss_pred EEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCc---------chhHHHHHHHHcC
Q 008693 229 GFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG---------SDLTATTIGKALG 299 (557)
Q Consensus 229 ~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgG---------SD~tAa~lA~~L~ 299 (557)
++|.++|.+.+. +.+..+.+. .+++.|.|||+.+ |+.+++.+++| +|++|+++|.+|+
T Consensus 115 -Llt~~d~~~~~~----~~~~~~~l~-~lL~~g~iPVin~-------nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~ 181 (715)
T TIGR01092 115 -LVTDLDFRDEQF----RRQLNETVH-ELLRMNVVPVVNE-------NDAVSTRAAPYSDSQGIFWDNDSLAALLALELK 181 (715)
T ss_pred -EechhhcccHHH----HHHHHHHHH-HHHHCCCEEEEcC-------CCcccccccccccccceecchHHHHHHHHHHcC
Confidence 888888776543 223333343 4568899999964 45566666654 6999999999999
Q ss_pred cCcEEEeeCCCccccCCCCCCCCCccccccCHHHHH-HHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC--
Q 008693 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA-ELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN-- 369 (557)
Q Consensus 300 A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~-eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~-- 369 (557)
|+.+++||||||||++||+ .|++++|++++..+.. ++++ .+...|.| +++..+.++|+|++|.|+.+|+
T Consensus 182 Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l 260 (715)
T TIGR01092 182 ADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNI 260 (715)
T ss_pred CCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchH
Confidence 9999999999999999997 5999999999876554 3322 23567777 5888999999999999987773
Q ss_pred -------CCCeeEecCCCC
Q 008693 370 -------APGTLIRRSRDM 381 (557)
Q Consensus 370 -------~~GT~I~~~~~~ 381 (557)
..||+|.+...|
T Consensus 261 ~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 261 TKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHHhcCCCCceEecccchh
Confidence 469999776544
|
This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region. |
| >PTZ00489 glutamate 5-kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-17 Score=166.15 Aligned_cols=169 Identities=17% Similarity=0.234 Sum_probs=121.1
Q ss_pred HHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCccc
Q 008693 194 RDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKA 273 (557)
Q Consensus 194 ~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~ 273 (557)
+..+.+.|...-..++...|.++|+++. |+ ++|..++.+.. .+.+..+.+. .+++.+.|||+.|.-. .
T Consensus 72 ~qa~aaiGq~~L~~~y~~~f~~~~~~~a-----qi-Llt~~d~~~~~----~~~n~~~~l~-~lL~~g~VPIinend~-~ 139 (264)
T PTZ00489 72 KQALASMGQPLLMHMYYTELQKHGILCA-----QM-LLAAYDLDSRK----RTINAHNTIE-VLISHKVIPIINENDA-T 139 (264)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhCCCeEE-----Ee-eeeccccccch----hhHHHHHHHH-HHHHCCCEEEECCCCC-c
Confidence 3456677886677778889999999873 33 45555554321 1222333343 3567899999987311 1
Q ss_pred CCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCcc---ccccCHHHHHHHH----HcCCCcch
Q 008693 274 WRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP---VPYLTFDEAAELA----YFGAQVLH 346 (557)
Q Consensus 274 ~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~---i~~ls~~Ea~eLa----~~Ga~vlh 346 (557)
..++.. -|++|..|+++|.+++|+.++++|||||||++||+..|+|++ ++++++++..... ..|...|.
T Consensus 140 -~~~e~~---~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~ 215 (264)
T PTZ00489 140 -ALHELV---FGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIV 215 (264)
T ss_pred -ccceeE---eCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChH
Confidence 112322 346999999999999999999999999999999999999998 7889988774432 23456777
Q ss_pred Hh--HHHHHHhCCCCEEEecCCCCC-----------CCCeeEecC
Q 008693 347 PQ--SMRPAREGDIPVRVKNSYNPN-----------APGTLIRRS 378 (557)
Q Consensus 347 p~--a~~~a~~~~Ipv~I~n~~~p~-----------~~GT~I~~~ 378 (557)
+| ++..+.++|++++|.|..+|+ ..||+|.+.
T Consensus 216 ~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 216 TKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence 65 888999999999999887763 258888653
|
|
| >COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=8e-17 Score=164.54 Aligned_cols=230 Identities=21% Similarity=0.391 Sum_probs=171.6
Q ss_pred CcceEEEEecccccCC------HHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 79 KQLTCVMKFGGSSLAS------AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~------~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
..+.+|.|+|-|++.+ .+.+..+++.|.... ..+.||+||.++ +. ++.
T Consensus 5 ~~~riVvKiGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-ia-----aG~------------------- 59 (369)
T COG0263 5 SARRIVVKIGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IA-----AGR------------------- 59 (369)
T ss_pred cceEEEEEECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch-hh-----hCh-------------------
Confidence 3466999999999985 467777777776643 345566666322 21 110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
..|+.+. +...-...+.+.+.|+..-+......|..+|++. .|+ ++
T Consensus 60 --------~~Lg~~~--------------------rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v-----~Qi-LL 105 (369)
T COG0263 60 --------TRLGLPK--------------------RPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKV-----GQI-LL 105 (369)
T ss_pred --------hhcCCCC--------------------CCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCee-----eEE-Ee
Confidence 1122221 1222345677889999999999999999999985 455 78
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceee--cCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
|.+++.+.+ .+.+.+..|.. |++.|.|||| |+ |..+.+ +--|.+|..++++|...+||.++++||+
T Consensus 106 Tr~D~~~r~----ry~Nar~Tl~~-Ll~~gvVPII------NE-NDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDi 173 (369)
T COG0263 106 TRDDFSDRR----RYLNARNTLSA-LLELGVVPII------NE-NDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDI 173 (369)
T ss_pred ehhhhhhHH----HHHHHHHHHHH-HHHCCceeee------cC-CCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEcc
Confidence 877765432 45566666664 5788999999 63 665544 5578999999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchHh--HHHHHHhCCCCEEEecCCCCC---------CC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN---------AP 371 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (557)
||+||+|||..|+|++|++++- .|...++- +|...|.-| |.+.|.++|+|+.|.++.+|+ ..
T Consensus 174 DGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~ 253 (369)
T COG0263 174 DGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAV 253 (369)
T ss_pred CcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCC
Confidence 9999999999999999999873 47777765 456677765 899999999999999999985 47
Q ss_pred CeeEecCC
Q 008693 372 GTLIRRSR 379 (557)
Q Consensus 372 GT~I~~~~ 379 (557)
||++.+..
T Consensus 254 GT~F~~~~ 261 (369)
T COG0263 254 GTLFEPQA 261 (369)
T ss_pred ccEEecCC
Confidence 99998653
|
|
| >TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.3e-16 Score=172.76 Aligned_cols=234 Identities=15% Similarity=0.168 Sum_probs=158.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCCC-CccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~~-~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
.+.|.|+||+.+.++ .+..+++.|..... ..++|+|++.|..-+++++
T Consensus 18 ~~~ViK~GG~~~~~~-~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~------------------------------ 66 (429)
T TIGR01890 18 KTFVVGLGGELVEGG-NLGNIVADIALLHSLGVRLVLVHGARPQIERILA------------------------------ 66 (429)
T ss_pred CEEEEEEChhhccCc-cHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHH------------------------------
Confidence 579999999999875 34677777765432 3345666666655444433
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceE-----EeccceeEEEEec
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKAR-----QYDAFDIGFITTD 234 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~-----~l~~~~~~iit~~ 234 (557)
.+++++ ++++|++++.+.+.....++ .| .+|..|.+ .|++. +++. .+++.|.++++..
T Consensus 67 -~~g~~~-----------~~~~G~RvT~~~~l~~~~~~--~g-~vn~~l~~-~l~~~-~~~~~~~~~~l~~~dg~~~~a~ 129 (429)
T TIGR01890 67 -ARGRTP-----------HYHRGLRVTDEASLEQAQQA--AG-TLRLAIEA-RLSMS-LSNTPMAGSRLPVVSGNFVTAR 129 (429)
T ss_pred -HcCCCc-----------eeeCCcccCCHHHHHHHHHH--hC-hHHHHHHH-HHHhc-CCcccccccCceEccceEEEEE
Confidence 122222 34556655543333333332 45 67877655 46655 4443 3666666676643
Q ss_pred C--------CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEE
Q 008693 235 D--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (557)
Q Consensus 235 ~--------~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i 305 (557)
. ++. .++..++.+.++. +++.+.+||+++ +|.+ .+|+.++++ +|..|+.||.+|+|+++++
T Consensus 130 ~~~~~~~~~~g~~G~v~~v~~~~l~~-----ll~~g~ipvi~p-i~~~-~~g~~~nvn---aD~~A~~lA~al~a~kli~ 199 (429)
T TIGR01890 130 PIGVIEGVDYEHTGVIRKIDTEGIRR-----QLDAGSIVLLSP-LGHS-PTGETFNLD---MEDVATSVAISLKADKLIY 199 (429)
T ss_pred ECCCCcCccccccceEEEEcHHHHHH-----HHHCCCeEEECC-cccC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEE
Confidence 2 222 4566666665543 456789999998 6877 489999999 9999999999999999999
Q ss_pred eeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCc-chHh--HHHHHHhCCC-CEEEecCCCCC----------CC
Q 008693 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQV-LHPQ--SMRPAREGDI-PVRVKNSYNPN----------AP 371 (557)
Q Consensus 306 ~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~v-lhp~--a~~~a~~~~I-pv~I~n~~~p~----------~~ 371 (557)
+|||||||+. +.++|++|+.+|+.++......- +-|+ ++.-|.+.|+ +++|.|...|+ +.
T Consensus 200 ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~ 273 (429)
T TIGR01890 200 FTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGI 273 (429)
T ss_pred EeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCC
Confidence 9999999963 36799999999999987542223 4676 5566678886 58998876553 47
Q ss_pred CeeEecC
Q 008693 372 GTLIRRS 378 (557)
Q Consensus 372 GT~I~~~ 378 (557)
||.|..+
T Consensus 274 GT~i~~d 280 (429)
T TIGR01890 274 GTSISKE 280 (429)
T ss_pred cceEecc
Confidence 9999764
|
This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate. |
| >cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.4e-16 Score=160.22 Aligned_cols=223 Identities=18% Similarity=0.241 Sum_probs=146.3
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCCC-CccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~~-~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
+++|.|+||+.+.+. .++++++.|....+ ..++|+|++.|..-+++++.
T Consensus 19 ~~~VIKlGG~ai~~~-~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~----------------------------- 68 (280)
T cd04237 19 KTFVIAFGGEAVAHP-NFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAE----------------------------- 68 (280)
T ss_pred CEEEEEEChHHhcCc-hHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHH-----------------------------
Confidence 579999999999874 45677776665432 33444555555544443321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEec-----cceeEEEEe
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYD-----AFDIGFITT 233 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~-----~~~~~iit~ 233 (557)
++.++ ++++|++.+ ++...+.+ .++|+ ++..+ .+.|+. |++++.+. +.+..++..
T Consensus 69 --~gi~~-----------~~~~G~RvT---~~~~l~~~~~~~g~-v~~~l-~~~l~~-~~~a~~~~~~~~~~~~~~~v~~ 129 (280)
T cd04237 69 --RGLEP-----------RYHRGLRIT---DAAALECVKEAAGA-VRLEI-EALLSM-GLPNSPMAGARIRVVSGNFVTA 129 (280)
T ss_pred --cCCCc-----------cccCCcCcC---CHHHHHHHHHHHHH-HHHHH-HHHHHh-hccccCcCCCceEEecCeEEEE
Confidence 11111 233444333 33343333 23464 47764 455655 88877443 223223333
Q ss_pred cCCC---------CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEE
Q 008693 234 DDFT---------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (557)
Q Consensus 234 ~~~~---------~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~ 304 (557)
...+ ..++...+.+.++ .+++.+.+||+++ +|.+ .+|+.++++ +|..|+.||.+|+|++++
T Consensus 130 ~~~~~~~~~~~g~~G~v~~v~~~~i~-----~lL~~g~ipv~~~-~g~~-~~g~~lnvn---aD~~A~~LA~~L~a~klv 199 (280)
T cd04237 130 RPLGVVDGVDFGHTGEVRRIDADAIR-----RQLDQGSIVLLSP-LGYS-PTGEVFNLS---MEDVATAVAIALKADKLI 199 (280)
T ss_pred EECCcccCceEeeeccEEEEcHHHHH-----HHHHCCCEEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHHcCCCEEE
Confidence 2211 1334444544443 3457888999988 6777 479999888 999999999999999999
Q ss_pred EeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCC---CcchHh--HHHHHHhCCC-CEEEecCCCC
Q 008693 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA---QVLHPQ--SMRPAREGDI-PVRVKNSYNP 368 (557)
Q Consensus 305 i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga---~vlhp~--a~~~a~~~~I-pv~I~n~~~p 368 (557)
|.|||||||++ +.+++++++.+|+.++...|. ..|.|| ++..+.+.|+ +++|.+...|
T Consensus 200 ~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~ 263 (280)
T cd04237 200 FLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAED 263 (280)
T ss_pred EEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC
Confidence 99999999973 368999999999999988764 678887 5666677899 6999987666
|
Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK). |
| >cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.9e-16 Score=155.54 Aligned_cols=207 Identities=11% Similarity=0.088 Sum_probs=151.7
Q ss_pred CCcceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHH
Q 008693 78 EKQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (557)
Q Consensus 78 ~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (557)
..++..|.|+||+.+.+++.+..++..+.-.. +-++|+|+.+...++..|. . .
T Consensus 33 ~~~~f~VIK~GG~~~~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~---~----~------------------ 87 (271)
T cd04236 33 DWPAFAVLEVDHSVFRSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS---D----L------------------ 87 (271)
T ss_pred CCCCEEEEEEChhhhcCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc---C----C------------------
Confidence 55688999999999999999999999887643 4577777765443433221 0 0
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-
Q 008693 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (557)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (557)
......+++. ..|..| ...|+..|++++.+.+.. ++++..
T Consensus 88 ----------------------------------~~~~~~~v~~---~~n~~L-v~~L~~~G~~A~gl~g~~-~~i~a~~ 128 (271)
T cd04236 88 ----------------------------------ELQAARSRLV---KDCKTL-VEALQANSAAAHPLFSGE-SVLQAEE 128 (271)
T ss_pred ----------------------------------cchheehhHH---HHHHHH-HHHHHhCCCCeeeecCcc-ceEEEEE
Confidence 0001122222 456654 456899999999999874 466543
Q ss_pred --CCCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 235 --DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 235 --~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
+++. +++..++.+.++. +++.|.|||+++ +|.+ .+|++.+++ +|..|+.+|.+|+|++++++||++|
T Consensus 129 ~~d~g~vG~V~~Vd~~~I~~-----lL~~g~IPVisp-lg~~-~~G~~~NiN---aD~~A~~lA~aL~A~KLIfltd~~G 198 (271)
T cd04236 129 PEPGASKGPSVSVDTELLQW-----CLGSGHIPLVCP-IGET-SSGRSVSLD---SSEVTTAIAKALQPIKVIFLNRSGG 198 (271)
T ss_pred cccCCccceEEEECHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCCcc
Confidence 2222 4566666665543 457899999999 7888 489999999 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCH-HHHHHHHHcCC--Ccc---hHh--HHHHHHhCCCCEEEec
Q 008693 312 VLTCDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVL---HPQ--SMRPAREGDIPVRVKN 364 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~-~Ea~eLa~~Ga--~vl---hp~--a~~~a~~~~Ipv~I~n 364 (557)
||+. +.+++++|+. +|..+|...|. ..| -|+ ++.-+...++.++|.+
T Consensus 199 V~~~------~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~ 253 (271)
T cd04236 199 LRDQ------KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS 253 (271)
T ss_pred eECC------CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC
Confidence 9973 2678999995 99999988754 345 454 6667788999999987
|
Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF). |
| >PRK07431 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-16 Score=174.02 Aligned_cols=146 Identities=25% Similarity=0.401 Sum_probs=124.3
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-------CceeEEEeCCchhhhHHHHHHH
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQE 454 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-------e~sIS~~I~~~~~~~~~~~~~~ 454 (557)
++..+++|+.++|+++|++. ++.+.+|+++++|+.|+++||+++|++++ ..+++|+++.++....
T Consensus 426 ~~~~v~gIa~~~~~~~i~l~--~~~~~~g~~a~if~~l~~~~i~id~i~~~~~~~~~~~~~isf~v~~~~~~~~------ 497 (587)
T PRK07431 426 DEPEVRGVALDRNQAQLAIR--NVPDRPGMAASIFGALAEANISVDMIVQSQRCRSDGTRDISFTVPKEDREAA------ 497 (587)
T ss_pred CCCcEEEEEccCCEEEEEEC--CCCCCccHHHHHHHHHHHcCCeEEEEEecCCCCCCCceeEEEEEcHHHHHHH------
Confidence 34579999999999999996 58889999999999999999999999874 3679999998764321
Q ss_pred HHHHHHHHhh---hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHH
Q 008693 455 LDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVR 530 (557)
Q Consensus 455 l~~~~~~l~~---~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~ 530 (557)
..+++++.+ ...+.+.+++++||+||. |...+|+++|+|++|+++||+++++++ |+++|+++|+++|.++|++
T Consensus 498 -~~~l~~l~~~~~~~~i~~~~~va~VSvVG~gm~~~~gv~~ri~~aL~~~~I~v~~i~~--S~~~Is~vV~~~~~~~av~ 574 (587)
T PRK07431 498 -QKVLRELAKQLPGAEVEDGPAIAKVSIVGAGMPGTPGVAARMFRALADAGINIEMIAT--SEIRTSCVVAEDDGVKALQ 574 (587)
T ss_pred -HHHHHHHHHhcCCceEEEeCCeEEEEEECCCccCCcCHHHHHHHHHHHCCCcEEEeec--cceEEEEEEeHHHHHHHHH
Confidence 222333331 245777899999999997 778999999999999999999999986 9999999999999999999
Q ss_pred HHHHHhcc
Q 008693 531 ALHETFFE 538 (557)
Q Consensus 531 ~LH~~f~~ 538 (557)
+||++|..
T Consensus 575 ~Lh~~f~~ 582 (587)
T PRK07431 575 AVHQAFGL 582 (587)
T ss_pred HHHHHhcc
Confidence 99999953
|
|
| >PRK12353 putative amino acid kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-15 Score=157.17 Aligned_cols=122 Identities=13% Similarity=0.118 Sum_probs=88.4
Q ss_pred HhhchhcCCceEEEcCCC--cccCCCCceeecC-CCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCcccccc
Q 008693 253 LHGDWITDLAIPIVTGFL--GKAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (557)
Q Consensus 253 l~~~ll~~~~vpVv~Gfi--g~~~~~G~~ttlg-RgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~l 329 (557)
..+.+++.+.|||++|.- +....++.+.+.. -+.+|..|+.+|.+|+|+.++++|||||||++||+ |++++|+++
T Consensus 177 ~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~~--~~a~~i~~i 254 (314)
T PRK12353 177 AIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFGK--PNQKKLDEV 254 (314)
T ss_pred HHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCCC--CCCeECcCc
Confidence 333456889999999762 2211233332211 24589999999999999999999999999997663 899999999
Q ss_pred CHHHHHHHHH---cCCCcchHh---HHHHH-HhCCCCEEEecCCCC-----CCCCeeEe
Q 008693 330 TFDEAAELAY---FGAQVLHPQ---SMRPA-REGDIPVRVKNSYNP-----NAPGTLIR 376 (557)
Q Consensus 330 s~~Ea~eLa~---~Ga~vlhp~---a~~~a-~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (557)
+++|+.++.. .+...|.|| |++.+ .+.+++++|.|..+. ...||+|.
T Consensus 255 ~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~~~~i~~~l~g~~GT~i~ 313 (314)
T PRK12353 255 TVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITSLEKAKEALEGKAGTVIV 313 (314)
T ss_pred CHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECCchHHHHHhCCCCCeEec
Confidence 9999999874 345678886 44555 578999999873211 12688874
|
|
| >PRK05279 N-acetylglutamate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.6e-15 Score=164.85 Aligned_cols=234 Identities=19% Similarity=0.233 Sum_probs=152.9
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCCC-CccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~~-~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
+++|.|+||+.+.+.+ ++++++.|....+ ..++|+|++.|..-+++++.
T Consensus 26 ~~~VIk~GG~~l~~~~-~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~----------------------------- 75 (441)
T PRK05279 26 KTFVIMLGGEAIAHGN-FSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAA----------------------------- 75 (441)
T ss_pred CEEEEEECchhccChh-HHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHH-----------------------------
Confidence 5799999999998753 5677777765432 33455555555544444321
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEecccee-----EEEEec
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI-----GFITTD 234 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~-----~iit~~ 234 (557)
++..+ ++.+|++.+.+.+.....++ .| .++..+ .+.|+ .|++++.+.+..+ .++...
T Consensus 76 --~g~~~-----------~~~~G~RvT~~~~l~~~~~~--~g-~v~~~l-~~~l~-~g~~a~~~~~~~~~~~~~~~~~~~ 137 (441)
T PRK05279 76 --RGIEP-----------RYHKGLRVTDAAALECVKQA--AG-ELRLDI-EARLS-MGLPNTPMAGAHIRVVSGNFVTAR 137 (441)
T ss_pred --cCCCc-----------eecCCcccCCHHHHHHHHHH--HH-HHHHHH-HHHHh-ccCCCCcccCCcceEeeccEEEEE
Confidence 12221 23445544433222222333 46 778775 45565 4998877544332 222222
Q ss_pred C--------CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEE
Q 008693 235 D--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (557)
Q Consensus 235 ~--------~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i 305 (557)
. ++. .++...+.+.++ .+++.|.|||+++ +|.+ .+|++.+++ +|..|+.||.+|+|+++++
T Consensus 138 ~~~~~~~~~~g~~G~v~~v~~~~i~-----~ll~~g~ipV~~~-i~~~-~~g~~~ni~---~D~~a~~lA~~l~a~~lv~ 207 (441)
T PRK05279 138 PLGVDDGVDYQHTGEVRRIDAEAIR-----RQLDSGAIVLLSP-LGYS-PTGESFNLT---MEEVATQVAIALKADKLIF 207 (441)
T ss_pred ECCCCCCccccceeeEEEEeHHHHH-----HHHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEE
Confidence 1 221 334444444443 3457889999976 6777 479998888 9999999999999999999
Q ss_pred eeCCCccccCCCCCCCCCccccccCHHHHHHHHH---cC--CCcchHh--HHHHHHhCCC-CEEEecCCCCC--------
Q 008693 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY---FG--AQVLHPQ--SMRPAREGDI-PVRVKNSYNPN-------- 369 (557)
Q Consensus 306 ~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~---~G--a~vlhp~--a~~~a~~~~I-pv~I~n~~~p~-------- 369 (557)
+|||||||++ ++++|++++.+|+.++.. .| ...|-|| ++.-+.++|+ +++|.+...|+
T Consensus 208 ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~ 281 (441)
T PRK05279 208 FTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFT 281 (441)
T ss_pred EECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhc
Confidence 9999999953 478999999999999876 33 2567787 4455567799 69998876663
Q ss_pred --CCCeeEecC
Q 008693 370 --APGTLIRRS 378 (557)
Q Consensus 370 --~~GT~I~~~ 378 (557)
+.||.|...
T Consensus 282 ~~g~GT~i~~~ 292 (441)
T PRK05279 282 RDGIGTMIVME 292 (441)
T ss_pred CCCCceEEecC
Confidence 479999764
|
|
| >cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP) | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.9e-15 Score=150.87 Aligned_cols=212 Identities=18% Similarity=0.282 Sum_probs=142.8
Q ss_pred EEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHHH
Q 008693 84 VMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDE 161 (557)
Q Consensus 84 V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~~ 161 (557)
|.|+||+.+.+. ++++++.|.... +.++ |+|++.|..-+.+++.
T Consensus 2 ViKiGG~~~~~~--l~~~~~di~~l~~~g~~~-VlVHGgg~~i~~~~~~------------------------------- 47 (248)
T cd04252 2 VIKVGGAIIEDD--LDELAASLSFLQHVGLYP-IVVHGAGPQLNEELEA------------------------------- 47 (248)
T ss_pred EEEEChhhhhcc--HHHHHHHHHHHHHCCCcE-EEEeCCCHHHHHHHHH-------------------------------
Confidence 899999999874 677877777543 3355 5555555544444331
Q ss_pred hCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-----C
Q 008693 162 LGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-----D 235 (557)
Q Consensus 162 l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~-----~ 235 (557)
++..+ ++.+|++.+ ++...+.+ .+++ .+|..++++ |+++|++++.+.+. +++.. +
T Consensus 48 ~gi~~-----------~~~~g~RvT---~~~~l~~v~~al~-~vn~~iv~~-l~~~g~~a~~l~~~---~~~a~~~~~~d 108 (248)
T cd04252 48 AGVEP-----------EYVDGLRVT---DPETLAVARKVFL-EENLKLVEA-LERNGARARPITSG---VFEAEYLDKDK 108 (248)
T ss_pred cCCCc-----------EeeCCcccC---CHHHHHHHHHHHH-HHHHHHHHH-HHhCCCCcccccCc---eEEEEECcCcc
Confidence 22221 123343333 34444443 3456 788886654 89999999999874 33332 3
Q ss_pred CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 236 FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 236 ~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
|+. .++...+.+.++. +++.+.|||++| +|.+ .+|++.+++ +|..|+.+|.+|+|+++++.|||||||+
T Consensus 109 ~g~~G~v~~i~~~~i~~-----~L~~g~IPVi~p-~~~~-~~g~~~nvn---aD~~A~~lA~aL~a~kli~ltdv~GV~~ 178 (248)
T cd04252 109 YGLVGKITGVNKAPIEA-----AIRAGYLPILTS-LAET-PSGQLLNVN---ADVAAGELARVLEPLKIVFLNETGGLLD 178 (248)
T ss_pred CCccCceeeECHHHHHH-----HHHCCCeEEECC-ceEC-CCCCEEEEC---HHHHHHHHHHHcCCCeEEEEECCcccCC
Confidence 332 4555566655543 357899999998 6777 479999998 9999999999999999999999999996
Q ss_pred CCCCCCCCCccccccCH-HHHHHHHHcCC--CcchHh--HHHHHHhC---CCCEEEec
Q 008693 315 CDPNIHPHAKPVPYLTF-DEAAELAYFGA--QVLHPQ--SMRPAREG---DIPVRVKN 364 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~-~Ea~eLa~~Ga--~vlhp~--a~~~a~~~---~Ipv~I~n 364 (557)
. +.+++++++. +++.++...|. ..|.|| ++..+.+. ...++|.+
T Consensus 179 ~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~ 230 (248)
T cd04252 179 G------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS 230 (248)
T ss_pred C------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC
Confidence 4 3678999997 57778876542 456666 44455554 34577765
|
The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th |
| >PLN02825 amino-acid N-acetyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.3e-14 Score=158.70 Aligned_cols=196 Identities=15% Similarity=0.188 Sum_probs=136.3
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
.+.|.||||+.+.++ .+..++..|.... +.++|+|+ +.+..-|++++.
T Consensus 18 ktfVIk~gG~~l~~~-~~~~l~~DialL~~lGi~~VlVH-GggpqI~~~l~~---------------------------- 67 (515)
T PLN02825 18 STFVVVISGEVVAGP-HLDNILQDISLLHGLGIKFVLVP-GTHVQIDKLLAE---------------------------- 67 (515)
T ss_pred CEEEEEECchhhcCc-hHHHHHHHHHHHHHCCCCEEEEc-CCCHHHHHHHHH----------------------------
Confidence 579999999999887 6888888887542 34555555 444444444431
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHH--------HHHHcCCce----EEeccc
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAA--------YLNKIGVKA----RQYDAF 226 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~--------~L~~~Gi~a----~~l~~~ 226 (557)
+++++ ++.+|++++. +.+.+.+....-.++..+.+. .|++.|+++ ..+++.
T Consensus 68 ---~gi~~-----------~f~~G~RVTd---~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~gl~~~ 130 (515)
T PLN02825 68 ---RGREP-----------KYVGAYRITD---SAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVGVSVA 130 (515)
T ss_pred ---cCCCc-----------eeeCCcccCC---HHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCceEec
Confidence 11111 2334444443 233332222222556665554 489999999 788887
Q ss_pred eeEEEEecC--------CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHH
Q 008693 227 DIGFITTDD--------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (557)
Q Consensus 227 ~~~iit~~~--------~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~ 297 (557)
+..+++... |+. +++..++.+.++. +++.|.|||+++ +|.+ .+|++.|++ +|..|+.+|.+
T Consensus 131 ~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~-----~L~~g~Ipvisp-lg~s-~~Ge~~Nin---aD~vA~avA~a 200 (515)
T PLN02825 131 SGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKE-----RLDSNCIVLLSN-LGYS-SSGEVLNCN---TYEVATACALA 200 (515)
T ss_pred cCcEEEEEECCCCcCccccceeeEEEEcHHHHHH-----HHhCCCeEEECC-ceEC-CCCCEEeeC---HHHHHHHHHHH
Confidence 777887753 332 4566667665543 357899999999 7888 589999999 99999999999
Q ss_pred cCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHc
Q 008693 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYF 340 (557)
Q Consensus 298 L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~ 340 (557)
|+|++++++||++ +++. +.+++++|+.+|+.+|...
T Consensus 201 L~A~KLI~ltd~~-~~~~------~g~li~~l~~~e~~~li~~ 236 (515)
T PLN02825 201 IGADKLICIVDGP-ILDE------NGRLIRFMTLEEADMLIRK 236 (515)
T ss_pred cCCCeEEEEeCcc-eecC------CCCCcCcCCHHHHHHHHHh
Confidence 9999999999977 5543 3578999999999998754
|
|
| >cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-14 Score=141.04 Aligned_cols=135 Identities=18% Similarity=0.163 Sum_probs=96.5
Q ss_pred CHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCC
Q 008693 190 TPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF 269 (557)
Q Consensus 190 ~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gf 269 (557)
+....|++......+|+.+|+..+...+. .+...+... +..+.+||+.++
T Consensus 50 ~~~~ad~mgilat~~na~~l~~~~~~~~~-------------------------~~~~~~~~~-----~~~g~ipV~~P~ 99 (203)
T cd04240 50 SDAAAHWMAILAMEQYGYLLADLEPRLVA-------------------------RTLAELTDV-----LERGKIAILLPY 99 (203)
T ss_pred ChHHHHHHHHHHHHHHHHHHhccCCcccc-------------------------CCHHHHHHH-----HHCCCcEEEeCc
Confidence 45566888887888888876532211110 011223222 356789999875
Q ss_pred Cc---ccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcch
Q 008693 270 LG---KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346 (557)
Q Consensus 270 ig---~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlh 346 (557)
-- .+ ..++..++. +|..|+.+|..|+|+.+++.|||||||++| ++++++++++|+.+ ..+++
T Consensus 100 ~~~~~~~-~~~~~~~~t---tD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~-----~~~id 164 (203)
T cd04240 100 RLLLDTD-PLPHSWEVT---SDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG-----ETSVD 164 (203)
T ss_pred hhhcccC-CCCcccccC---HHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC-----CCeeh
Confidence 21 12 123444444 999999999999999999999999999865 89999999988753 56778
Q ss_pred HhHHHHHHhCCCCEEEecCCCCC
Q 008693 347 PQSMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
+-+.+.+.++++|++|.|..+|+
T Consensus 165 ~~~~~~~~~~gi~v~I~~g~~~~ 187 (203)
T cd04240 165 PAFPRLLTKYGIRCYVVNGDDPE 187 (203)
T ss_pred hhHHHHHHhCCCeEEEECCCCcc
Confidence 76777889999999999988774
|
Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily. |
| >PRK12352 putative carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.61 E-value=1e-14 Score=150.75 Aligned_cols=240 Identities=16% Similarity=0.155 Sum_probs=144.9
Q ss_pred ceEEEEecccccCCH----------HHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 81 LTCVMKFGGSSLASA----------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~----------~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
+.+|.||||..+.+. +.++++++.|.... +.++|+|+.+...+.+.|.+.....
T Consensus 3 k~iVI~lGGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~-------------- 68 (316)
T PRK12352 3 ELVVVAIGGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAH-------------- 68 (316)
T ss_pred cEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCccc--------------
Confidence 479999999999761 46677777776643 4566666655555655554422100
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCce-------E
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKA-------R 221 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a-------~ 221 (557)
++ ++++.+... ..........|-.+++.|. ..|...|.++ +
T Consensus 69 -----------------------------~~-~g~rvt~~~-~~v~~~~g~i~~~i~~~L~-~~l~~~g~~~~~~vvt~v 116 (316)
T PRK12352 69 -----------------------------ER-EGLPLTPLA-NCVADTQGGIGYLIQQALN-NRLARHGEKKAVTVVTQV 116 (316)
T ss_pred -----------------------------cc-CCCCCCCHH-HHHHHHHHHHHHHHHHHHH-HHHHhcCCCCeeEEEEEE
Confidence 01 122211110 1111223345667777754 5688777664 6
Q ss_pred EeccceeEEEEecC--------------------CCC----ce-----------eeecchHHHHHHHhhchhcCCceEEE
Q 008693 222 QYDAFDIGFITTDD--------------------FTN----AD-----------ILEATYPAVAKRLHGDWITDLAIPIV 266 (557)
Q Consensus 222 ~l~~~~~~iit~~~--------------------~~~----a~-----------i~~~~~~~v~~~l~~~ll~~~~vpVv 266 (557)
.+++.|..++...+ ++. .+ +..++.+ +++.+++++.|+|.
T Consensus 117 ~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv~sp~pv~~V~~~-----~I~~ll~~g~iVi~ 191 (316)
T PRK12352 117 EVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAP-----AIKALIQQGFVVIG 191 (316)
T ss_pred EECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEecCCCCCceEEcHH-----HHHHHHHCCCEEEe
Confidence 66766665542211 000 00 2223333 44445678889555
Q ss_pred cCC----CcccCCCCc----eeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHH
Q 008693 267 TGF----LGKAWRTCA----ITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELA 338 (557)
Q Consensus 267 ~Gf----ig~~~~~G~----~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa 338 (557)
+|. ++.+ ..|+ ..+++ .|+.|+.+|.+|+|++++|+|||+|||.++|+ |+++++++++.+|+.++.
T Consensus 192 ~ggggiPv~~~-~~g~~~n~~~nIn---aD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~~--~~~~li~~lt~~e~~~li 265 (316)
T PRK12352 192 AGGGGIPVVRT-DAGDYQSVDAVID---KDLSTALLAREIHADILVITTGVEKVCIHFGK--PQQQALDRVDIATMTRYM 265 (316)
T ss_pred cCCCCCCEEeC-CCCCccCceeeec---HHHHHHHHHHHhCCCEEEEEeCchhhccCCCC--CCcccccccCHHHHHHHH
Confidence 411 1222 1233 33455 89999999999999999999999999988765 678899999999999998
Q ss_pred HcC---CCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeEec
Q 008693 339 YFG---AQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRR 377 (557)
Q Consensus 339 ~~G---a~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~ 377 (557)
..| ...|-|| |++.+.+...+++|.+.... ...||+|.+
T Consensus 266 ~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~~~~i~~al~g~~GT~I~~ 315 (316)
T PRK12352 266 QEGHFPPGSMLPKIIASLTFLEQGGKEVIITTPECLPAALRGETGTHIIK 315 (316)
T ss_pred hcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcchHHHHHHHcCCCCeEEEe
Confidence 754 3568886 44555555557998862210 126888864
|
|
| >TIGR00746 arcC carbamate kinase | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.8e-14 Score=144.44 Aligned_cols=118 Identities=18% Similarity=0.229 Sum_probs=85.7
Q ss_pred hchhcCCceEEEcCCCc--c-cCCCCceeec-CCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 255 GDWITDLAIPIVTGFLG--K-AWRTCAITTL-GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 255 ~~ll~~~~vpVv~Gfig--~-~~~~G~~ttl-gRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
+.+++.|.++|.+|.-| . + .+|.+.+. --+..|..|+++|.+|+||.++++|||||||+++ ..|+++++++++
T Consensus 176 ~~LL~~G~iVI~~ggggiPvi~-e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~--~~p~a~~i~~it 252 (310)
T TIGR00746 176 KTLVENGVIVISSGGGGVPVVL-EGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINY--GKPDEKALREVT 252 (310)
T ss_pred HHHHHCCCEEEeCCCCCcCEEe-cCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCC--CCCCCcCCcCcC
Confidence 34567887767665433 2 2 24443211 0245999999999999999999999999999964 248899999999
Q ss_pred HHHHHHHHH---cCCCcchHh---HHHHHHhCCCCEEEecCCC------CCCCCeeEe
Q 008693 331 FDEAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSYN------PNAPGTLIR 376 (557)
Q Consensus 331 ~~Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~------p~~~GT~I~ 376 (557)
++|+.++.. ++...|.|| |++.+.+.+++++|.|..+ .+ .||+|.
T Consensus 253 ~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 253 VEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITSLENAVEALEGK-AGTRVT 309 (310)
T ss_pred HHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEechHHHHHHHCCC-CCcEEe
Confidence 999999974 455778775 4466777788999976221 22 688885
|
The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff. |
| >cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.9e-13 Score=140.49 Aligned_cols=120 Identities=18% Similarity=0.238 Sum_probs=89.0
Q ss_pred hhchhcCCceEEEcCCCcccC--CCCceeecC-CCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 254 HGDWITDLAIPIVTGFLGKAW--RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 254 ~~~ll~~~~vpVv~Gfig~~~--~~G~~ttlg-RgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
.+.|++++.|||+.|--|... .+|...+.. -...|++|+++|..|+|+.++++|||||||+++| .|++++|+++|
T Consensus 174 I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is 251 (308)
T cd04235 174 IKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVT 251 (308)
T ss_pred HHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcC
Confidence 334568899999997532211 123322211 1346999999999999999999999999999665 38999999999
Q ss_pred HHHHHHHHH---cCCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeE
Q 008693 331 FDEAAELAY---FGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLI 375 (557)
Q Consensus 331 ~~Ea~eLa~---~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I 375 (557)
++|+.++.. ++...|+|| +++.+.+.+.+++|.+..+. ...||+|
T Consensus 252 ~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~~~~i~~aL~G~~GT~I 307 (308)
T cd04235 252 VEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITSLENAEAALEGKAGTVI 307 (308)
T ss_pred HHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECCHHHHHHHHCCCCCeEE
Confidence 999999985 567789999 77788877889999763220 1257776
|
Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK). |
| >PRK12686 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.4e-12 Score=132.60 Aligned_cols=122 Identities=13% Similarity=0.144 Sum_probs=87.1
Q ss_pred HhhchhcCCceEEEcCCCc--ccCCCCceeecC-CCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCcccccc
Q 008693 253 LHGDWITDLAIPIVTGFLG--KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (557)
Q Consensus 253 l~~~ll~~~~vpVv~Gfig--~~~~~G~~ttlg-RgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~l 329 (557)
..+.|++.+.|||.+|--| .-..+|...... -+..|..|+.||.+|+|+.++|+|||||||+ ||+ .|++++|+++
T Consensus 175 ~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~-~~~-~p~ak~I~~I 252 (312)
T PRK12686 175 TIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFI-NFN-KPNQQKLDDI 252 (312)
T ss_pred HHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhcc-CCC-CCCCeECCcc
Confidence 3344568899999887522 211245444332 3458999999999999999999999999999 455 3889999999
Q ss_pred CHHHHHHHHHc---CCCcchHh---HHHHHHh-CCCCEEEecCCCC-----CCCCeeEe
Q 008693 330 TFDEAAELAYF---GAQVLHPQ---SMRPARE-GDIPVRVKNSYNP-----NAPGTLIR 376 (557)
Q Consensus 330 s~~Ea~eLa~~---Ga~vlhp~---a~~~a~~-~~Ipv~I~n~~~p-----~~~GT~I~ 376 (557)
+++|+.++... +...|-|| |+..+.+ .+.+++|.+..+. ...||+|.
T Consensus 253 ~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~~~~i~~aL~G~~GT~I~ 311 (312)
T PRK12686 253 TVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITSLEQAKEALAGNAGTHIT 311 (312)
T ss_pred CHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeCchHHHHHhCCCCCeEEe
Confidence 99999999753 45678887 3444443 3678888863221 12688874
|
|
| >cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=99.44 E-value=3e-13 Score=107.98 Aligned_cols=64 Identities=84% Similarity=1.138 Sum_probs=61.2
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
++|++||.++..+++++++|++|+++||++.||+||+|+++++++|+++|.++|++.||++||+
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~~~av~~Lh~~f~~ 65 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEAEGCVQALHKSFFE 65 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 7899999977778999999999999999999999999999999999999999999999999974
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.44 E-value=4e-13 Score=107.66 Aligned_cols=64 Identities=23% Similarity=0.511 Sum_probs=61.2
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+++|++||. | ..+++++++|++|+++||+++||+||+|+++||++|+++|.++|++.||++||+
T Consensus 2 ~a~VsvVG~gm-~~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~~~av~~Lh~~f~~ 66 (66)
T cd04915 2 VAIVSVIGRDL-STPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDYDNAIKALHAALVE 66 (66)
T ss_pred EEEEEEECCCC-CcchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHHHHHHHHHHHHHhC
Confidence 689999997 6 589999999999999999999999999999999999999999999999999985
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas |
| >COG1608 Predicted archaeal kinase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-11 Score=118.70 Aligned_cols=156 Identities=20% Similarity=0.189 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeec
Q 008693 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (557)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttl 282 (557)
.++.. ++..|.+.|++++...|... .+. +.++.......+.+ +++.+.|||+.|-+-.+..+| ...+
T Consensus 81 ~L~~~-V~~~l~~~Gv~av~~~P~s~--~~~----~gr~~~~~l~~i~~-----~l~~gfvPvl~GDVv~d~~~g-~~Ii 147 (252)
T COG1608 81 ELNSI-VVDALLDAGVRAVSVVPISF--STF----NGRILYTYLEAIKD-----ALEKGFVPVLYGDVVPDDDNG-YEII 147 (252)
T ss_pred HHHHH-HHHHHHhcCCccccccCcce--eec----CCceeechHHHHHH-----HHHcCCEeeeecceEEcCCCc-eEEE
Confidence 44554 56678899999987666553 221 12332211222322 357889999999876653223 3344
Q ss_pred CCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcC-CC---cch--HhHHHHHHhC
Q 008693 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG-AQ---VLH--PQSMRPAREG 356 (557)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G-a~---vlh--p~a~~~a~~~ 356 (557)
. .|-.+..||..|+++++.+.|||||||+.||..+|+++.++++... ..+...+ .. .|- -+++..+.+.
T Consensus 148 S---GDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~--~~~~gs~~~DVTGGi~~Kl~~~~~~~~~ 222 (252)
T COG1608 148 S---GDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGR--VALGGSGGTDVTGGIAKKLEALLEIARY 222 (252)
T ss_pred e---ccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhh--hhhcCcCcccchhhHHHHHHHHHHHHhc
Confidence 4 6999999999999999999999999999999999999998887654 2222112 11 222 3466666777
Q ss_pred CCCEEEecCCCCC---------CCCeeEe
Q 008693 357 DIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 357 ~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
+-++++.|...|+ ..||+|.
T Consensus 223 ~~~vyi~ng~~~~ni~~~l~G~~vGT~I~ 251 (252)
T COG1608 223 GKEVYIFNGNKPENIYRALRGENVGTRID 251 (252)
T ss_pred CceEEEECCCCHHHHHHHhcCCCCceEec
Confidence 8889999988774 5788885
|
|
| >PRK04531 acetylglutamate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=3e-12 Score=136.71 Aligned_cols=109 Identities=21% Similarity=0.345 Sum_probs=79.5
Q ss_pred hcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCH-HHHHH
Q 008693 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTF-DEAAE 336 (557)
Q Consensus 258 l~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~-~Ea~e 336 (557)
++.|.|||+++ +|.+ .+|++.+++ +|..|+.+|.+|+|++++++|||+|||+.| .+++++|+. +|...
T Consensus 126 L~~g~IPVlsp-lg~~-~~G~~~Nvn---aD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~ 194 (398)
T PRK04531 126 LRAGSIPVIAS-LGET-PSGQILNIN---ADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDH 194 (398)
T ss_pred HHCCCEEEEeC-cEEC-CCCcEEEEC---HHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHH
Confidence 46889999988 5776 479999998 999999999999999999999999999743 678999996 57777
Q ss_pred HHHcCC--CcchHh--HHHHHHhCCCC-EEEecCCCC----------CCCCeeEecC
Q 008693 337 LAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPGTLIRRS 378 (557)
Q Consensus 337 La~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~GT~I~~~ 378 (557)
|...|. ..|.|+ ++.-|.+ ++| +++.....| ++.||+|...
T Consensus 195 l~~~~~vtgGM~~KL~~a~~al~-~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g 250 (398)
T PRK04531 195 LMQQPWINGGMKLKLEQIKELLD-RLPLESSVSITSPSDLAKELFTHKGSGTLVRRG 250 (398)
T ss_pred HHhcCCCCccHHHHHHHHHHHHh-CCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence 765432 456665 3444443 343 333222223 2479999764
|
|
| >PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=4e-11 Score=123.38 Aligned_cols=119 Identities=19% Similarity=0.207 Sum_probs=86.7
Q ss_pred hchhcCCceEEEcCCCc---ccCCCCceeecC-CCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 255 GDWITDLAIPIVTGFLG---KAWRTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 255 ~~ll~~~~vpVv~Gfig---~~~~~G~~ttlg-RgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
+.+++++.|||++|.-| .+ .+|++.++. -...|.+|+.+|.+|+|+.++|+|||||||++ |+ .|++++|++++
T Consensus 179 ~~LLe~G~IvI~~GgGGiPV~~-~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~~-~p~~~~i~~It 255 (313)
T PRK12454 179 KALVENGFIVIASGGGGIPVIE-EDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-YG-KPDQKPLDKVT 255 (313)
T ss_pred HHHHHCCCEEEEeCCCccceEc-CCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-CC-CCCCeEccccC
Confidence 34567899999997532 23 245554432 13479999999999999999999999999986 43 47899999999
Q ss_pred HHHHHHHHHc---CCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeEe
Q 008693 331 FDEAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (557)
Q Consensus 331 ~~Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (557)
++|+.++... +..-|-|| |++.+.+.+.+++|.+..+. ...||+|.
T Consensus 256 ~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~~~~i~~aL~G~~GT~I~ 312 (313)
T PRK12454 256 VEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIASLEKAVEALEGKTGTRII 312 (313)
T ss_pred HHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECchHHHHHHHCCCCCeEeC
Confidence 9999998753 34568886 44556666778988753221 12688885
|
|
| >PRK12354 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=9e-12 Score=127.79 Aligned_cols=123 Identities=20% Similarity=0.142 Sum_probs=88.2
Q ss_pred HhhchhcCCceEEEcCCCcccC---CCCceeecC-CCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccc
Q 008693 253 LHGDWITDLAIPIVTGFLGKAW---RTCAITTLG-RGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPY 328 (557)
Q Consensus 253 l~~~ll~~~~vpVv~Gfig~~~---~~G~~ttlg-RgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ 328 (557)
..+.|++.+.|||.+|.=|... .+|...... -.+.|.+|+.||.+|+|+.++|+|||||||++++ .|++++|++
T Consensus 167 ~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i~~ 244 (307)
T PRK12354 167 PIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAIAQ 244 (307)
T ss_pred HHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeECCC
Confidence 3334567889888875433321 113222221 2468999999999999999999999999999754 378999999
Q ss_pred cCHHHHHHHHHcCCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeEecC
Q 008693 329 LTFDEAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRRS 378 (557)
Q Consensus 329 ls~~Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~~ 378 (557)
++++|+.++ .++..-|-|| |++.+.+.+.+++|.+..+. ...||+|.+.
T Consensus 245 it~~e~~~~-~f~~GgM~pKV~AA~~~~~~gg~~viI~~~~~l~~al~G~~GT~I~~~ 301 (307)
T PRK12354 245 ATPDELREL-GFAAGSMGPKVEAACEFVRATGKIAGIGSLEDIQAILAGEAGTRISPE 301 (307)
T ss_pred CCHHHHHhh-CCCcCChHHHHHHHHHHHHhCCCEEEECCHHHHHHHHCCCCceEEecC
Confidence 999999998 6777889997 44556666768888642210 1269999764
|
|
| >cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=97.51 Aligned_cols=63 Identities=25% Similarity=0.479 Sum_probs=59.2
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+++|+++|. |...+|+++|+|++|+++||++.++++ |+++|+++|+++|.++|+++||++|+.
T Consensus 1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~--Se~~is~~v~~~~~~~av~~Lh~~f~~ 64 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTAD--SHTTISCLVSEDDVKEAVNALHEAFEL 64 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEc--CccEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 478999997 788999999999999999999999887 899999999999999999999999963
|
This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th |
| >cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.1e-11 Score=96.93 Aligned_cols=65 Identities=32% Similarity=0.589 Sum_probs=61.8
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+++|+++|. +...+++.+++|+.|+++||++.||+|++|+.+++|++++++.+++++.||++||+
T Consensus 1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~~~~a~~~lh~~~~~ 66 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKDAVKALNIIHTNLLE 66 (66)
T ss_pred CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHHhC
Confidence 479999997 77889999999999999999999999999999999999999999999999999985
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-11 Score=97.52 Aligned_cols=62 Identities=27% Similarity=0.501 Sum_probs=57.0
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
++||+||. |...+++++++|++|.+. +|.+++||+|+++||++|+++|.++|+++||++||+
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~--~i~~i~~~~s~~~is~vv~~~d~~~av~~LH~~f~~ 63 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKK--PVHLVSQAANDLNLTFVVDEDQADGLCARLHFQLIE 63 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcC--CceEEEEeCCCCeEEEEEeHHHHHHHHHHHHHHHhC
Confidence 58999997 778999999999999865 677789999999999999999999999999999985
|
This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-11 Score=96.35 Aligned_cols=63 Identities=32% Similarity=0.657 Sum_probs=59.0
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+++|+++|. +...+++++++|++|+ +++|.+++||+|+++++|+|+++|.++|++.||++||.
T Consensus 1 ~alIsvvG~~~~~~~~v~~~i~~~L~--~i~i~~i~~~~s~~~is~~V~~~~~~~a~~~Lh~~f~~ 64 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDALE--DINVRMICYGASNHNLCFLVKEEDKDEVVQRLHSRLFE 64 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHH--hCCeEEEEEecCccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 489999997 7788999999999996 58999999999999999999999999999999999984
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.2e-11 Score=94.98 Aligned_cols=65 Identities=35% Similarity=0.651 Sum_probs=61.5
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+++|+++|. +...+++.+++|+.|+++||++.|++|+.|+.+++|+|++++.++++++||++||+
T Consensus 1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~~~~~~~lh~~~~~ 66 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDATKALRAVHERFFL 66 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 478999997 77889999999999999999999999998999999999999999999999999984
|
This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa |
| >PRK09411 carbamate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=99.21 E-value=7.1e-10 Score=113.08 Aligned_cols=117 Identities=17% Similarity=0.174 Sum_probs=85.3
Q ss_pred hhchhcCCceEEEcCC--CcccC-CCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 254 HGDWITDLAIPIVTGF--LGKAW-RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 254 ~~~ll~~~~vpVv~Gf--ig~~~-~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
.+.|++++.|||.+|. ++... .+|...++. .|.+|+.||.+|+|+.++|+|||||||+.++ .|++++|++++
T Consensus 169 I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vID---kD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it 243 (297)
T PRK09411 169 IELLLKEGHVVICSGGGGVPVTEDGAGSEAVID---KDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHAT 243 (297)
T ss_pred HHHHHHCCCEEEecCCCCCCeEEcCCCeEEecC---HHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcC
Confidence 3345678889888743 22211 234444454 8999999999999999999999999998653 57889999999
Q ss_pred HHHHHHHHHcCCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeEe
Q 008693 331 FDEAAELAYFGAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (557)
Q Consensus 331 ~~Ea~eLa~~Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (557)
.+|+.++.. ....|.|| |++.+...+.+++|.+..+. ...||+|.
T Consensus 244 ~~e~~~~~~-~~GgM~pKVeAA~~~v~~~g~~a~I~~l~~~~~~l~G~~GT~I~ 296 (297)
T PRK09411 244 PDELAPFAK-ADGAMGPKVTAVSGYVRSRGKPAWIGALSRIEETLAGEAGTCIS 296 (297)
T ss_pred HHHHHHhcc-CCCCcHHHHHHHHHHHHhCCCeEEECChhHHHHHHCCCCCeEEe
Confidence 999987765 44568887 45667777889999753221 12588874
|
|
| >KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.4e-10 Score=110.76 Aligned_cols=157 Identities=15% Similarity=0.267 Sum_probs=111.3
Q ss_pred HHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCC
Q 008693 197 LVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT 276 (557)
Q Consensus 197 i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~ 276 (557)
+.+.|..=-..+.-..|.++|+.. .|+ ++|..++.+. ..+.++...+.+ |+..+.|||+-- |
T Consensus 92 ~AAvGQ~~Lmalye~lF~Qy~~~i-----AQv-LvT~~Di~d~----~~r~Nl~~Ti~e-LL~m~viPIvNe-------N 153 (285)
T KOG1154|consen 92 CAAVGQSGLMALYETLFTQYGITI-----AQV-LVTRNDILDE----QQRKNLQNTISE-LLSMNVIPIVNE-------N 153 (285)
T ss_pred HHHhCcchHHHHHHHHHHHhccch-----hee-eecCcchhhH----HHHHHHHHHHHH-HHhCCceeeecC-------C
Confidence 445554444456677789999975 444 6776655432 345666666654 567899999932 3
Q ss_pred Ccee--ecCCCc---chhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHH-H-----HHHcCCCcc
Q 008693 277 CAIT--TLGRGG---SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAA-E-----LAYFGAQVL 345 (557)
Q Consensus 277 G~~t--tlgRgG---SD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~-e-----La~~Ga~vl 345 (557)
..+. -..+|. +|..|+++|..++||-++++|||||+||..|. -..+++++..+..+.. . -+..|...|
T Consensus 154 Davs~~~~~~~D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd-~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM 232 (285)
T KOG1154|consen 154 DAVSPREIPFGDSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPD-ADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGM 232 (285)
T ss_pred CccCCcccccCCCCcccHHHHHHHHHhccCEEEEEecccccccCCCC-CCcceeeeeeccCCCCCccccCccCccCcCcc
Confidence 3322 234555 89999999999999999999999999995544 3457778877766554 2 334466678
Q ss_pred hHh--HHHHHHhCCCCEEEecCCCCCCCC
Q 008693 346 HPQ--SMRPAREGDIPVRVKNSYNPNAPG 372 (557)
Q Consensus 346 hp~--a~~~a~~~~Ipv~I~n~~~p~~~G 372 (557)
..| |...|...|+++.|.|+..|+..+
T Consensus 233 ~tKv~AA~~A~~~Gv~viI~~g~~p~~I~ 261 (285)
T KOG1154|consen 233 ETKVKAAVNALNAGVSVIITNGDAPENIT 261 (285)
T ss_pred hhhHHHHHHHhcCCceEEEeCCCChHHHH
Confidence 765 788999999999999999997543
|
|
| >cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=90.43 Aligned_cols=65 Identities=29% Similarity=0.614 Sum_probs=61.2
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+++|+++|. +...+++.+++|+.|++.||++.|++|+.++.+++|+|+++|.+++++.||++||.
T Consensus 1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~~~~~~~lh~~~~~ 66 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDADKAVKAIYEEFFN 66 (66)
T ss_pred CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 478999997 77889999999999999999999999998999999999999999999999999984
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) | Back alignment and domain information |
|---|
Probab=99.03 E-value=9.9e-10 Score=86.94 Aligned_cols=64 Identities=33% Similarity=0.620 Sum_probs=60.3
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
+++|+++|. +...+++.+++|+.|+++||++.|++|+.++.+++|+++++|.+++++.||++|.
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~~~~~~~Lh~~~~ 65 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDGWAAVKAVHDEFG 65 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHHHHHHHHHHHHhc
Confidence 479999997 7778999999999999999999999999899999999999999999999999984
|
Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.8e-09 Score=86.26 Aligned_cols=62 Identities=34% Similarity=0.580 Sum_probs=56.4
Q ss_pred cccceeEEEEEcc-ccc-cchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008693 470 LLQHRSIISLIGN-VQR-SSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534 (557)
Q Consensus 470 ~~~~~aiIsIVG~-~~~-~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~ 534 (557)
..+++++|+++|. +.. .+|+++++|++|+++||||++++ |+.+++++|+++|.++|+++||+
T Consensus 2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is---S~~~~~ilV~~~~~~~A~~~L~~ 65 (65)
T PF13840_consen 2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS---SEISISILVKEEDLEKAVEALHE 65 (65)
T ss_dssp EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE---ESSEEEEEEEGGGHHHHHHHHHH
T ss_pred ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE---EeeeEEEEEeHHHHHHHHHHhcC
Confidence 3578999999997 644 89999999999999999999998 79999999999999999999996
|
|
| >cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.4e-09 Score=86.47 Aligned_cols=75 Identities=92% Similarity=1.237 Sum_probs=65.9
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheee
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVN 469 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~ 469 (557)
+++|++.+.++.+.+|+++++|+.|+++||++|||++++.++||+++.++.+....+.++++.+.+++++.+.++
T Consensus 1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~qs~~sISftV~~sd~~~~~~~~~~l~~~~~~~~~~~~~~ 75 (78)
T cd04933 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKDAVVN 75 (78)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEecCCEEEEEEEhhhhhhhhhHHHHHHHHHHHHHHcCeEE
Confidence 368999999999999999999999999999999999999999999999887655566667888888898877554
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.1e-07 Score=89.14 Aligned_cols=88 Identities=27% Similarity=0.332 Sum_probs=75.9
Q ss_pred CCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHh
Q 008693 276 TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE 355 (557)
Q Consensus 276 ~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~ 355 (557)
+.++| ||..+..+|+.++|.++++.|||||||+.+|+ ++++++|+..|..+ |-..++|-+=..+.+
T Consensus 113 SW~VT------SDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~----~~t~vD~~~P~Ll~k 178 (212)
T COG2054 113 SWEVT------SDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT----GETSVDPYLPKLLVK 178 (212)
T ss_pred ceeec------ccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc----CcccccchhhHHHHH
Confidence 34677 99999999999999999999999999999875 58999988776654 778999999999999
Q ss_pred CCCCEEEecCCCCC----------CCCeeEec
Q 008693 356 GDIPVRVKNSYNPN----------APGTLIRR 377 (557)
Q Consensus 356 ~~Ipv~I~n~~~p~----------~~GT~I~~ 377 (557)
.++.++|.|..+|+ .+||+|.+
T Consensus 179 ~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 179 YKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred cCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence 99999999999885 26677654
|
|
| >cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=98.76 E-value=3e-08 Score=81.84 Aligned_cols=66 Identities=32% Similarity=0.526 Sum_probs=61.6
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
+++|+++|. +...+++.+++|+.|++++|++.|++|++++.+++|+++.++.+++++.||++|+.+
T Consensus 1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~~~~~~~l~~~~~~~ 67 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDADKALEALEEEFALE 67 (80)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHHhh
Confidence 478999996 778899999999999999999999999999999999999999999999999999754
|
This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat |
| >cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.7e-08 Score=76.93 Aligned_cols=61 Identities=39% Similarity=0.707 Sum_probs=56.6
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
++|+++|. +...+++++++|+.|++++|++.++++ ++.+++|+|+++|.+++++.||++|+
T Consensus 1 ~~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~~~~~~~~~l~~~l~ 62 (63)
T cd04923 1 AKVSIVGAGMRSHPGVAAKMFKALAEAGINIEMIST--SEIKISCLVDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEc--cCCeEEEEEeHHHHHHHHHHHHHHhc
Confidence 47899996 777899999999999999999999987 68999999999999999999999996
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.9e-08 Score=76.58 Aligned_cols=64 Identities=41% Similarity=0.776 Sum_probs=59.3
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
++|+++|. +...+++.+++|+.|++.+|++.+++|+.++.+++|++++++.+++++.||++|+.
T Consensus 1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~~~~~~~l~~~~~~ 65 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDADKAVKALHEEFFL 65 (65)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHHHHHHHHHHHHHhC
Confidence 57999997 77889999999999999999999999987789999999999999999999999973
|
This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an |
| >cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=98.73 E-value=4.3e-08 Score=76.54 Aligned_cols=61 Identities=38% Similarity=0.693 Sum_probs=56.4
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
++|+++|. +...+++.+++|+.|++.+|++.++++ ++.+++|+|+++|.+++++.||++|+
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~--s~~~is~~v~~~d~~~~~~~l~~~~~ 62 (63)
T cd04936 1 AKVSIVGAGMRSHPGVAAKMFEALAEAGINIEMIST--SEIKISCLIDEDDAEKAVRALHEAFE 62 (63)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEc--cCceEEEEEeHHHHHHHHHHHHHHhc
Confidence 47899997 777899999999999999999999987 67999999999999999999999996
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu |
| >cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
Probab=98.71 E-value=5.7e-08 Score=79.43 Aligned_cols=71 Identities=31% Similarity=0.543 Sum_probs=59.9
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeec
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNL 470 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~ 470 (557)
++.|++.+.+|.+.+|+++++|+.|+++||++||+++++.+++|+++.+++.. +.++.++++|++++.+++
T Consensus 1 ~~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~s~~~isftv~~~~~~~-----~~l~~l~~el~~~~~v~~ 71 (73)
T cd04934 1 ILVINIHSNKKSLSHGFLARIFAILDKYRLSVDLISTSEVHVSMALHMENAED-----TNLDAAVKDLQKLGTVDI 71 (73)
T ss_pred CEEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEehhhcCh-----HHHHHHHHHHHHheEEEe
Confidence 46789999999999999999999999999999999999999999999875421 145677788888776654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro |
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=98.71 E-value=6.8e-08 Score=79.42 Aligned_cols=72 Identities=42% Similarity=0.556 Sum_probs=59.2
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHH-HHHHHHhhhheeec
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELD-HVVEELEKIAIVNL 470 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~-~~~~~l~~~~~i~~ 470 (557)
+++|++.+.++.+.+|+++++|+.|+++||+++||++++.++||+++.++.... +++. .++.+|++++.+++
T Consensus 1 ~~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~s~~~iSftv~~~d~~~~----~~~~~~l~~~l~~~~~v~~ 73 (75)
T cd04932 1 QTLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITTSEISVALTLDNTGSTSD----QLLTQALLKELSQICDVKV 73 (75)
T ss_pred CEEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEeecCCEEEEEEeccccchh----HHHHHHHHHHHHhccEEEe
Confidence 468899888899999999999999999999999999999999999998764321 2344 56677887776654
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.6e-07 Score=77.28 Aligned_cols=73 Identities=34% Similarity=0.597 Sum_probs=59.6
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeec
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNL 470 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~ 470 (557)
+++|++.+.+|.+.+|+++++|+.|+++||++||+++++.+++|+++.++.+... +.++.+.++|++++.+++
T Consensus 1 ~~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~s~~~isftv~~~~~~~~~---~~~~~l~~el~~~~~v~~ 73 (75)
T cd04935 1 IRLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVSTSETNVTVSLDPDPNGLDP---DVLDALLDDLNQICRVKI 73 (75)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEeCCCEEEEEEeCcccccch---HHHHHHHHHHHhceEEEE
Confidence 4689999999999999999999999999999999999999999999987631111 145667778887666653
|
This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.1e-07 Score=97.28 Aligned_cols=114 Identities=21% Similarity=0.292 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchH
Q 008693 411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLI 489 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v 489 (557)
+..+.+....+++|++....+....-.-.|.... ..-..+..++..+++++|+++|. |.+.+|+
T Consensus 212 ~~~~a~~~a~~~~i~i~i~~~~~~~~gT~I~~~~---------------~~~~~v~~I~~~~~va~vsv~g~~~~~~~g~ 276 (401)
T TIGR00656 212 LHPRTVEPAMRSGVPIEVRSSFDPEEGTLITNSM---------------ENPPLVKGIALRKNVTRVTVHGLGMLGKRGF 276 (401)
T ss_pred cCHHHHHHHHHCCCeEEEEECCCCCCCeEEEeCc---------------ccCCceEEEEEECCEEEEEEecCCCCCCccH
Confidence 3466778888999999888654322112221110 01113566888899999999996 8888999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 490 LEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 490 ~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
++++|+.|++++|++.+++|++|+.+++|+|+++|.+++++.||+.|...
T Consensus 277 ~~~if~~L~~~~I~i~~i~~~~s~~~Is~~V~~~d~~~a~~~L~~~~~~~ 326 (401)
T TIGR00656 277 LARIFGALAERNINVDLISQTPSETSISLTVDETDADEAVRALKDQSGAA 326 (401)
T ss_pred HHHHHHHHHHcCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999998443
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases. |
| >PRK06291 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.7e-07 Score=97.31 Aligned_cols=112 Identities=29% Similarity=0.407 Sum_probs=89.1
Q ss_pred HHHHHHHHHhCCceEEEEEccCc--eeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccch
Q 008693 412 LAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSL 488 (557)
Q Consensus 412 la~If~~L~~~gI~Vd~IstSe~--sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~ 488 (557)
..+.+....++||++....+.+. .-++..+.... .. ..+..|+..+++++|+++|. |...++
T Consensus 272 ~~~a~~~~~~~~i~i~i~~~~~~~~~gt~i~~~~~~--------------~~-~~V~~It~~~~valIsI~g~~m~~~~g 336 (465)
T PRK06291 272 HPRTIEPAMEKGIPVRVKNTFNPEFPGTLITSDSES--------------SK-RVVKAVTLIKNVALINISGAGMVGVPG 336 (465)
T ss_pred CHHHHHHHHHcCCcEEEecCCCCCCCceEEEecccc--------------cC-cccceEEeeCCEEEEEEeCCCCCCCcc
Confidence 35567778889999888765332 12222221110 00 23567888999999999997 778899
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 489 v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+++++|++|+++||+|.||+|++|+.+++|+|++++.+++++.||++|..
T Consensus 337 ~~arvf~~L~~~gI~V~mIsq~sse~sIsf~V~~~d~~~av~~L~~~~~~ 386 (465)
T PRK06291 337 TAARIFSALAEEGVNVIMISQGSSESNISLVVDEADLEKALKALRREFGE 386 (465)
T ss_pred HHHHHHHHHHHCCCcEEEEEecCCCceEEEEEeHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999975
|
|
| >cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=98.46 E-value=5e-07 Score=68.80 Aligned_cols=59 Identities=39% Similarity=0.646 Sum_probs=54.4
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH 533 (557)
++|+++|. +...+++.+++|+.|++++|++.+++|+.++.+++|+++.++.+++++.||
T Consensus 1 ~~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~~~~~~~~lh 60 (60)
T cd04868 1 AKVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESDLEKAVKALH 60 (60)
T ss_pred CEEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHHHHHHHHHhC
Confidence 47899997 667899999999999999999999999887899999999999999999987
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am |
| >cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.8e-07 Score=72.37 Aligned_cols=73 Identities=55% Similarity=0.788 Sum_probs=59.1
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeec
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNL 470 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~ 470 (557)
+++|++.+.++.+.+|+++++|+.|+++||+++++++|+.+++|+++.++.... +..++.+.++|++++.+++
T Consensus 1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~s~~~is~~v~~~~~~~~---~~~~~~~~~~l~~~~~~~~ 73 (75)
T cd04912 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLISTSEVSVSLTLDPTKNLSD---QLLLDALVKDLSQIGDVEV 73 (75)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEcCCcEEEEEEEchhhccc---hHHHHHHHHHHHhCCEEEE
Confidence 468999999999999999999999999999999999999999999998764221 1245667777877555543
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD |
| >COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.4e-05 Score=77.72 Aligned_cols=120 Identities=18% Similarity=0.221 Sum_probs=86.5
Q ss_pred HHhhchhcCCceEEEcCCCcccC-CCCc-e----eecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCcc
Q 008693 252 RLHGDWITDLAIPIVTGFLGKAW-RTCA-I----TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKP 325 (557)
Q Consensus 252 ~l~~~ll~~~~vpVv~Gfig~~~-~~G~-~----ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~ 325 (557)
..++.|+++|.++|..|.=|... +++. . ..+. -|+++++||..++||.++|+||||+||-.=-+ |+-+.
T Consensus 175 ~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVID---KDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p~q~~ 249 (312)
T COG0549 175 EAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVID---KDLASALLAEQIDADLLIILTDVDAVYVNFGK--PNQQA 249 (312)
T ss_pred HHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEc---cHHHHHHHHHHhcCCEEEEEeccchheecCCC--ccchh
Confidence 34455678888888876422211 0111 0 0111 49999999999999999999999999986433 67899
Q ss_pred ccccCHHHHHHHHHc---CCCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeEe
Q 008693 326 VPYLTFDEAAELAYF---GAQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIR 376 (557)
Q Consensus 326 i~~ls~~Ea~eLa~~---Ga~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~ 376 (557)
|++++.+|+.+.... ...-|-|| |+..+...|-+..|.+-.+- ...||.|.
T Consensus 250 L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~ItsLe~~~~~l~g~~GT~I~ 311 (312)
T COG0549 250 LDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITSLENAEAALEGKAGTVIV 311 (312)
T ss_pred hcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECcHHHHHHHhccCCCcEec
Confidence 999999999888764 45688898 77888888888888764332 24688875
|
|
| >PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-06 Score=100.03 Aligned_cols=111 Identities=22% Similarity=0.305 Sum_probs=88.2
Q ss_pred HHHHHHHHHhCCceEEEEEccCc-e-eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccch
Q 008693 412 LAKVFSTFEDLGISVDVVATSEV-S-LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSL 488 (557)
Q Consensus 412 la~If~~L~~~gI~Vd~IstSe~-s-IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~ 488 (557)
..+.+....++||++....+.+. . -++...... .+-..+..|+..+++++|+++|. |...++
T Consensus 266 hp~a~~~a~~~~Ipi~i~n~~~p~~~GT~I~~~~~---------------~~~~~Vk~It~~~dvalIsV~G~gm~~~~G 330 (819)
T PRK09436 266 HPRTIAPIAQFQIPCLIKNTFNPQAPGTLIGAESD---------------EDSLPVKGISNLNNMAMFNVSGPGMKGMVG 330 (819)
T ss_pred hHHHHHHHHHCCceEEEccCCCCCCCceEEEecCc---------------ccccccceEEEeCCEEEEEEEcCCCCCCcC
Confidence 45667778889999988765332 1 222221110 00123567888899999999997 788999
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008693 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 489 v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
+++++|+.|+++||+|.||+|++|+.+|+|+|++++.+++++.||++|.
T Consensus 331 ~~arIf~~La~~gI~V~mIsqssSe~sIsf~V~~~d~~~av~~L~~~f~ 379 (819)
T PRK09436 331 MASRVFAALSRAGISVVLITQSSSEYSISFCVPQSDAAKAKRALEEEFA 379 (819)
T ss_pred HHHHHHHHHHHCCCcEEEEEcCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999985
|
|
| >cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=67.97 Aligned_cols=49 Identities=47% Similarity=0.692 Sum_probs=45.6
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 397 lItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
.|++.+.+|.+.+|+.+++|+.|++++|+++++++++.+++|+++.++.
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t~~~~is~~v~~~~~ 50 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPTSENSVTLYLDDSLL 50 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEecCCCEEEEEEehhhh
Confidence 5788999999999999999999999999999999999999999998653
|
This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel |
| >cd04937 ACT_AKi-DapG-BS_2 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=98.22 E-value=4.4e-06 Score=66.26 Aligned_cols=51 Identities=22% Similarity=0.380 Sum_probs=47.5
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+++|++.|.+|...+|+++++|+.|++.||++.++++|+.+++|+++.++.
T Consensus 1 ~~~isvvG~~~~~~~gi~~~if~aL~~~~I~v~~~~~Se~~is~~v~~~~~ 51 (64)
T cd04937 1 CAKVTIIGSRIRGVPGVMAKIVGALSKEGIEILQTADSHTTISCLVSEDDV 51 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHHCCCCEEEEEcCccEEEEEEcHHHH
Confidence 367999999999999999999999999999999999999999999998763
|
This CD includes the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive AK isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The BS AKI is tetrameric consisting of two alpha and two beta subunits; th |
| >cd04912 ACT_AKiii-LysC-EC-like_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=98.18 E-value=8.8e-06 Score=66.72 Aligned_cols=63 Identities=22% Similarity=0.416 Sum_probs=54.4
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH---HHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA---EQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~---~kAv~~LH~~f~~ 538 (557)
+++|+++|. +...+++++++|++|+++||++.++++ |+.+++|+|++++. +..++.|-++|-.
T Consensus 1 ~~~Vsi~g~~l~~~~g~~~~if~~L~~~~I~v~~i~~--s~~~is~~v~~~~~~~~~~~~~~~~~~l~~ 67 (75)
T cd04912 1 ITLLNIKSNRMLGAHGFLAKVFEIFAKHGLSVDLIST--SEVSVSLTLDPTKNLSDQLLLDALVKDLSQ 67 (75)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHcCCeEEEEEc--CCcEEEEEEEchhhccchHHHHHHHHHHHh
Confidence 478999997 778899999999999999999999987 78999999999986 5577777766655
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC) and plants, (Zea mays Ask1, Ask2, and Arabidopsis thaliana AK1). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Like the A. thaliana AK1 (AK1-AT), the E. coli AKIII (LysC) has two bound feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The lysine-sensitive plant isoenzyme is synergistically inhibited by S-adenosylmethionine. A homolog of this group appears to be the Saccharomyces cerevisiae AK (Hom3) which clusters with this group as well. Members of this CD |
| >PF13840 ACT_7: ACT domain ; PDB: 3S1T_A 1ZHV_A 3AB4_K 3AB2_O 2DTJ_A 3AAW_A 2RE1_B 3MAH_A 1ZVP_D | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.6e-05 Score=63.44 Aligned_cols=54 Identities=24% Similarity=0.438 Sum_probs=48.5
Q ss_pred eeccEEEEEEEecCccc-hhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 391 LKRNVTMLDIVSTRMLG-QYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 391 ~~~nialItI~~~~m~~-~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
..++++.|++.+.+|.. .+|+++++|+.|+++||++.+++ |+.++++.|+++++
T Consensus 2 ~~~~~~~i~v~g~g~~~~~~Gv~a~i~~~La~~~I~i~~is-S~~~~~ilV~~~~~ 56 (65)
T PF13840_consen 2 IEEDWAKISVVGPGLRFDVPGVAAKIFSALAEAGINIFMIS-SEISISILVKEEDL 56 (65)
T ss_dssp EESEEEEEEEEEECGTTTSHHHHHHHHHHHHHTTS-ECEEE-ESSEEEEEEEGGGH
T ss_pred ccCCEEEEEEEccccCCCcccHHHHHHHHHHHCCCCEEEEE-EeeeEEEEEeHHHH
Confidence 35789999999998866 99999999999999999999999 99999999998874
|
|
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=61.03 Aligned_cols=57 Identities=28% Similarity=0.461 Sum_probs=50.1
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCc---eEEEEEEecccHHHHHHHH
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASK---VNISLIVNDDEAEQCVRAL 532 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe---~sIs~vV~~~d~~kAv~~L 532 (557)
++|+++|. .+.+++++++|+.|.+++|++.+++|+.+. .+++|.++++|.+++++.|
T Consensus 1 ~~v~v~~~-~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~~~~~~~~l 60 (61)
T cd04891 1 AQVTIKGV-PDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSDLEKALAIL 60 (61)
T ss_pred CEEEEecC-CCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHHHHHHHHHh
Confidence 36788884 566899999999999999999999998766 8899999999999998875
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.6e-05 Score=63.81 Aligned_cols=61 Identities=26% Similarity=0.363 Sum_probs=53.5
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCC---ceEEEEEEecccHHHHHHHHHHHh
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS---KVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsS---e~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
++|+++|. .+.+++++++|+.|+++||++.+++|+.+ +.+++|+++++|.+++++.||+..
T Consensus 2 ~~v~v~~~-~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~~~~~~~l~~~~ 65 (75)
T cd04913 2 AKITLRGV-PDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDLKKALAVLEKLK 65 (75)
T ss_pred eEEEECCC-CCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHHHHHHHHHHHHH
Confidence 67888884 55689999999999999999999999765 357999999999999999999954
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee |
| >cd04933 ACT_AK1-AT_1 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.5e-05 Score=64.73 Aligned_cols=64 Identities=19% Similarity=0.317 Sum_probs=54.5
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHH------HHHHHHHHHhccC
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE------QCVRALHETFFES 539 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~------kAv~~LH~~f~~~ 539 (557)
+++|+|.+. +...+|+++++|+.|+++||+|.||+| ++.+++|.|++++.. .+++.|-++|-..
T Consensus 1 ~~~i~i~~~~~~~~~g~~a~IF~~La~~~InVDmI~q--s~~sISftV~~sd~~~~~~~~~~l~~~~~~~~~~ 71 (78)
T cd04933 1 VTMLDITSTRMLGQYGFLAKVFSIFETLGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHVVEELEKD 71 (78)
T ss_pred CEEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEhhhhhhhhhHHHHHHHHHHHHHHc
Confidence 368899997 777899999999999999999999998 679999999999984 5777777766543
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine. This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. Like the Escherichia coli AKIII (LysC), Arabidopsis AK1 binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. A loop in common is involved in the binding of both Lys and S-adenosylmethionine providing an explanation for the synergistic inhibition by these effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04919 ACT_AK-Hom3_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3 | Back alignment and domain information |
|---|
Probab=98.01 E-value=2e-05 Score=62.31 Aligned_cols=50 Identities=24% Similarity=0.541 Sum_probs=45.6
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCch
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSK 444 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~ 444 (557)
+++|++.|.++.+.+++.+++|+.|++.||+++++++ ++.+++|+++.++
T Consensus 1 ~~~isvvg~~~~~~~~~~~~if~~L~~~~I~v~~i~q~~s~~~isf~v~~~~ 52 (66)
T cd04919 1 LAILSLVGKHMKNMIGIAGRMFTTLADHRINIEMISQGASEINISCVIDEKD 52 (66)
T ss_pred CeEEEEECCCCCCCcCHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHH
Confidence 4689999999999999999999999999999999975 7889999998865
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG0527 LysC Aspartokinases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.9e-05 Score=83.54 Aligned_cols=114 Identities=23% Similarity=0.326 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhCCceEEEEEccCce--eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccc
Q 008693 411 FLAKVFSTFEDLGISVDVVATSEVS--LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSS 487 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstSe~s--IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~ 487 (557)
+..+.++...+++|++..-++.+.. =|+....... .. ..+..|+..++.++|++.|. |...+
T Consensus 257 LHprav~pa~~~~Ip~~i~~t~~p~~~GTlI~~~~~~--------------~~-~~v~gIa~~~~~~~i~v~~~~~~~~~ 321 (447)
T COG0527 257 LHPRAVEPAMRSGIPLRIKNTFNPDAPGTLITAETES--------------DE-PVVKGIALDDNVALITVSGPGMNGMV 321 (447)
T ss_pred cCHHHHHHHHhcCCcEEEEecCCCCCCceEEecCCcC--------------CC-CceEEEEeCCCeEEEEEEccCccccc
Confidence 4577888899999999888765544 3444433210 00 23457888899999999997 77788
Q ss_pred hHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 488 LILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 488 ~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
|+++++|..|+++||++.+|.|+.++.+++|.+++++.+++.+.||+++...
T Consensus 322 g~~a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~ 373 (447)
T COG0527 322 GFAARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLEL 373 (447)
T ss_pred cHHHHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999855
|
|
| >cd04890 ACT_AK-like_1 ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=97.97 E-value=3.2e-05 Score=60.61 Aligned_cols=59 Identities=20% Similarity=0.412 Sum_probs=52.5
Q ss_pred EEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008693 476 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 476 iIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
.|++.|. |...+++.+++|+.|++++|++.+|++ ++.+++|+++.++.++.++.|-+++
T Consensus 2 ~i~i~~~~m~~~~~~~~~if~~l~~~~i~v~~i~t--~~~~is~~v~~~~~~~~~~~l~~~l 61 (62)
T cd04890 2 AIEIFDQLMNGEVGFLRKIFEILEKHGISVDLIPT--SENSVTLYLDDSLLPKKLKRLLAEL 61 (62)
T ss_pred EEEEeccccCcccCHHHHHHHHHHHcCCeEEEEec--CCCEEEEEEehhhhhHHHHHHHHhh
Confidence 5788886 777899999999999999999999998 6799999999999888888877654
|
This CD includes the first of two ACT domains found C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids, lysine, threonine, methionine, and isoleucine. This CD, includes the first ACT domain of the Escherichia coli (EC) isoenzyme, AKIII (LysC) and the Arabidopsis isoenzyme, asparate kinase 1, both enzymes monofunctional and involved in lysine synthesis, as well as the the first ACT domain of Bacillus subtilis (BS) isoenzyme, AKIII (YclM), and of the Saccharomyces cerevisiae AK (Hom3). Also included are the first ACT domains of the Methylomicrobium alcaliphilum AK, the first enzyme of the ectoine biosynthetic pathway. Members of this CD bel |
| >cd04922 ACT_AKi-HSDH-ThrA_2 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=97.95 E-value=3e-05 Score=61.06 Aligned_cols=51 Identities=25% Similarity=0.452 Sum_probs=45.8
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCchh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~~ 445 (557)
+++|++.|.++.+.+++.+++|+.|+++||+++++++ ++.+++|++++++.
T Consensus 1 ~~~isvvg~~~~~~~~~~~~i~~~l~~~~I~v~~i~~~~s~~~is~~v~~~~~ 53 (66)
T cd04922 1 LSILALVGDGMAGTPGVAATFFSALAKANVNIRAIAQGSSERNISAVIDEDDA 53 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHH
Confidence 4689999999999999999999999999999999974 78899999988653
|
This CD includes the second of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathwa |
| >cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.2e-05 Score=62.55 Aligned_cols=62 Identities=24% Similarity=0.362 Sum_probs=53.9
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHH-HHHHHHHHhcc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ-CVRALHETFFE 538 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~k-Av~~LH~~f~~ 538 (557)
++|.+.+. |...+|+++++|+.|+++||++.||+| ++.+++|.++.++.+. .++.|.++|-.
T Consensus 2 ~~I~i~~~~m~~~~g~~~~If~~la~~~I~vd~I~~--s~~~isftv~~~~~~~~~l~~l~~el~~ 65 (73)
T cd04934 2 LVINIHSNKKSLSHGFLARIFAILDKYRLSVDLIST--SEVHVSMALHMENAEDTNLDAAVKDLQK 65 (73)
T ss_pred EEEEEEcccCccccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEehhhcChHHHHHHHHHHHH
Confidence 67889997 778899999999999999999999998 6699999999987655 78888777754
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro |
| >cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.89 E-value=2.8e-05 Score=63.85 Aligned_cols=64 Identities=22% Similarity=0.314 Sum_probs=52.3
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEK 464 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~ 464 (557)
+.|++....|....||..|++++|+++||++++++++.+++|++++.+++... .++.+++++++
T Consensus 2 ~~I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~PSGID~~Siii~~~~~~~~-----~~~~i~~~i~~ 65 (76)
T cd04911 2 CSIYISKYLMNREVGFGRKLLSILEDNGISYEHMPSGIDDISIIIRDNQLTDE-----KEQKILAEIKE 65 (76)
T ss_pred ceEehhHhhccchhcHHHHHHHHHHHcCCCEeeecCCCccEEEEEEccccchh-----hHHHHHHHHHH
Confidence 45677788899999999999999999999999999999999999998865421 24455555554
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.7e-05 Score=61.64 Aligned_cols=61 Identities=20% Similarity=0.422 Sum_probs=49.9
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHH--HHHH-HHHHHhc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE--QCVR-ALHETFF 537 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~--kAv~-~LH~~f~ 537 (557)
++|++.|. +...+|+++++|+.|+++||+|.||+| ++.+++|.|+.++.. ++++ .|-.+|-
T Consensus 2 ~~ItI~~~~~~~~~g~~~~IF~~La~~~I~VDmI~~--s~~~iSftv~~~d~~~~~~~~~~l~~~l~ 66 (75)
T cd04932 2 TLVTLKSPNMLHAQGFLAKVFGILAKHNISVDLITT--SEISVALTLDNTGSTSDQLLTQALLKELS 66 (75)
T ss_pred EEEEEecCCCCCCcCHHHHHHHHHHHcCCcEEEEee--cCCEEEEEEeccccchhHHHHHHHHHHHH
Confidence 67889776 677899999999999999999999998 669999999999843 3554 5555543
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK06635 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.7e-05 Score=82.97 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhCCceEEEEEcc-CceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEccccccchH
Q 008693 411 FLAKVFSTFEDLGISVDVVATS-EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLI 489 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstS-e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~~~~~~~v 489 (557)
+..+.++.+.+.||++....+. ....++....... ..+ -.....+...+++++|+++| +.+.+|+
T Consensus 211 ~~~~a~~~~~~~~i~~~i~~~~~~~~gT~i~~~~~~--------~~~-----~~~i~~I~~~~~v~~Isv~g-~~~~~g~ 276 (404)
T PRK06635 211 LHPRSVEYAKKYNVPLRVRSSFSDNPGTLITGEEEE--------IME-----QPVVTGIAFDKDEAKVTVVG-VPDKPGI 276 (404)
T ss_pred cCHHHHHHHHHcCceEEEEcCCCCCCCCEEeeCCcc--------ccc-----cCceEEEEecCCeEEEEECC-CCCCccH
Confidence 4466788899999999877542 2334444332110 000 01235677889999999999 8888999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCc---eEEEEEEecccHHHHHHHHHHH
Q 008693 490 LEKAFRVLRRSGVNVQMISQGASK---VNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 490 ~~rif~~L~~~gInI~~IsqgsSe---~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
++++|++|++.||+|.+++|+.++ .+++|+|++++.+++++.||+.
T Consensus 277 l~~i~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~~~~~~a~~~L~~~ 325 (404)
T PRK06635 277 AAQIFGALAEANINVDMIVQNVSEDGKTDITFTVPRDDLEKALELLEEV 325 (404)
T ss_pred HHHHHHHHHHcCCeEEEEEecCCCCCceeEEEEEcHHHHHHHHHHHHHH
Confidence 999999999999999999998766 8999999999999999999993
|
|
| >cd04924 ACT_AK-Arch_2 ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2) | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00011 Score=57.80 Aligned_cols=51 Identities=25% Similarity=0.444 Sum_probs=45.5
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCchh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~~ 445 (557)
+++|++.|.++.+.+++.+++|+.|++.||+++|+++ ++.+++|+++.++.
T Consensus 1 ~~~isivg~~~~~~~~~~~~i~~~L~~~~I~v~~i~q~~s~~~isf~i~~~~~ 53 (66)
T cd04924 1 VAVVAVVGSGMRGTPGVAGRVFGALGKAGINVIMISQGSSEYNISFVVAEDDG 53 (66)
T ss_pred CeEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHH
Confidence 4689999999999999999999999999999999974 67889999988664
|
Included in this CD is the second of two ACT domains of a monofunctional aspartokinase found mostly in Archaea species (ACT_AK-Arch_2). The first or N-terminal ACT domain of these proteins cluster with the ThrA-like ACT 1 domains (ACT_AKi-HSDH-ThrA-like_1) which includes the threonine-sensitive archaeal Methanococcus jannaschii aspartokinase ACT 1 domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04936 ACT_AKii-LysC-BS-like_2 ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00011 Score=57.09 Aligned_cols=49 Identities=29% Similarity=0.521 Sum_probs=44.8
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 397 lItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+|++.+.++.+.+++.+++|+.|++.+|+++++++++.+++|+++.++.
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~d~ 50 (63)
T cd04936 2 KVSIVGAGMRSHPGVAAKMFEALAEAGINIEMISTSEIKISCLIDEDDA 50 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEccCceEEEEEeHHHH
Confidence 5788888888899999999999999999999999889999999998764
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive, aspartokinase (AK) isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis strain 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive AK isoenzymes. The B. subtilis strain 168 AKII is induced by methionine and repressed and inhibited by lysine. Although C. glutamicum is known to contain a single AK, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regu |
| >cd04923 ACT_AK-LysC-DapG-like_2 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related domains | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=56.76 Aligned_cols=49 Identities=29% Similarity=0.514 Sum_probs=44.8
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 397 lItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+|++.+.++.+.+++.+++|+.|++++|+++++++++.+++|+++.++.
T Consensus 2 ~v~v~g~~~~~~~~~~~~i~~~L~~~~i~v~~i~~s~~~is~~v~~~~~ 50 (63)
T cd04923 2 KVSIVGAGMRSHPGVAAKMFKALAEAGINIEMISTSEIKISCLVDEDDA 50 (63)
T ss_pred EEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEccCCeEEEEEeHHHH
Confidence 5788888888889999999999999999999999999999999998764
|
This CD includes the C-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the second and fourth, of four, ACT domains present in cyanobacteria AK. Also included are the C-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (B. subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04915 ACT_AK-Ectoine_2 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=57.96 Aligned_cols=50 Identities=16% Similarity=0.348 Sum_probs=44.4
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCchh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~~ 445 (557)
+++|++.|.+|. .+|+.+++|+.|.+.||++.|+++ |+.++||.+++++.
T Consensus 2 ~a~VsvVG~gm~-~~gv~~ki~~~L~~~~I~v~~i~~~~s~~~is~~V~~~~~ 53 (66)
T cd04915 2 VAIVSVIGRDLS-TPGVLARGLAALAEAGIEPIAAHQSMRNVDVQFVVDRDDY 53 (66)
T ss_pred EEEEEEECCCCC-cchHHHHHHHHHHHCCCCEEEEEecCCeeEEEEEEEHHHH
Confidence 678999999994 899999999999999999999987 55899999988663
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinas |
| >cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1) | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00012 Score=58.17 Aligned_cols=49 Identities=18% Similarity=0.421 Sum_probs=43.7
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
++|++.|. +...+|+++++|++|++.||++.|++ +|+.+++|.+++++.
T Consensus 2 a~VsvVG~-~~~~~~~~~~i~~aL~~~~I~v~~i~~g~s~~sis~~v~~~~~ 52 (65)
T cd04918 2 SIISLIGN-VQRSSLILERAFHVLYTKGVNVQMISQGASKVNISLIVNDSEA 52 (65)
T ss_pred cEEEEECC-CCCCccHHHHHHHHHHHCCCCEEEEEecCccceEEEEEeHHHH
Confidence 57889998 77789999999999999999999998 788999999998763
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04935 ACT_AKiii-DAPDC_1 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00021 Score=58.68 Aligned_cols=61 Identities=20% Similarity=0.373 Sum_probs=51.1
Q ss_pred eEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEeccc--HHH-HHHHHHHHhc
Q 008693 475 SIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE--AEQ-CVRALHETFF 537 (557)
Q Consensus 475 aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d--~~k-Av~~LH~~f~ 537 (557)
++|++.+. +...+++++++|+.|+++||++.||+| ++.+++|.++.++ ... .++.|-+++-
T Consensus 2 ~~i~i~~~~~~~~~g~~~~IF~~La~~~I~vDmI~~--s~~~isftv~~~~~~~~~~~~~~l~~el~ 66 (75)
T cd04935 2 RLVSMETLGMWQQVGFLADVFAPFKKHGVSVDLVST--SETNVTVSLDPDPNGLDPDVLDALLDDLN 66 (75)
T ss_pred EEEEEEcCCCCCccCHHHHHHHHHHHcCCcEEEEEe--CCCEEEEEEeCcccccchHHHHHHHHHHH
Confidence 67889997 777899999999999999999999998 6699999999998 233 6666666654
|
This CD includes the first of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04916 ACT_AKiii-YclM-BS_2 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00017 Score=56.74 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=45.5
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCchh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~~ 445 (557)
+++|++.|.++...+++.+++|+.|++.||+++++++ ++.+++|+++.++.
T Consensus 1 ~~lisivg~~~~~~~~~~~~i~~~L~~~~i~v~~i~~~~s~~~isf~v~~~d~ 53 (66)
T cd04916 1 LALIMVVGEGMKNTVGVSARATAALAKAGINIRMINQGSSEISIMIGVHNEDA 53 (66)
T ss_pred CeEEEEEcCCCCCCccHHHHHHHHHHHCCCCEEEEEecCcccEEEEEEeHHHH
Confidence 4689999999999999999999999999999999975 67889999998764
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. B. subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from B. subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR00657 asp_kinases aspartate kinase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00012 Score=80.12 Aligned_cols=108 Identities=21% Similarity=0.298 Sum_probs=81.8
Q ss_pred HHHHHHHHHhCCceEEEEEccCce--eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccch
Q 008693 412 LAKVFSTFEDLGISVDVVATSEVS--LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSL 488 (557)
Q Consensus 412 la~If~~L~~~gI~Vd~IstSe~s--IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~ 488 (557)
..+.+..+.+++|++....+.... -+...+.... .+-..+..++..+++++|++.|. +.. +|
T Consensus 252 ~~~a~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~~--------------~~~~~i~~It~~~~v~~Isv~g~~~~~-~g 316 (441)
T TIGR00657 252 HPRTLEPAMRAKIPIVVKSTFNPEAPGTLIVASTKE--------------MEEPIVKGLSLDRNQARVTVSGLGMKG-PG 316 (441)
T ss_pred CHHHHHHHHHcCCeEEEecCCCCCCCceEEEeCCCc--------------cccCccceEEEeCCEEEEEEECCCCCC-cc
Confidence 356677888899998887643211 2222211110 00012567888899999999997 555 99
Q ss_pred HHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008693 489 ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534 (557)
Q Consensus 489 v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~ 534 (557)
+++++|+.|+++||+|.+|+|++|+.+|+|+|++++.+++++.|..
T Consensus 317 ~la~if~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~ 362 (441)
T TIGR00657 317 FLARVFGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKS 362 (441)
T ss_pred HHHHHHHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999888744
|
The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis. |
| >cd04868 ACT_AK-like ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=53.78 Aligned_cols=48 Identities=42% Similarity=0.657 Sum_probs=42.8
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC--ceeEEEeCCch
Q 008693 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE--VSLSLTLDPSK 444 (557)
Q Consensus 397 lItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe--~sIS~~I~~~~ 444 (557)
+|++.+.+|.+.+++.+++|+.|++++|++++++++. .+++|+++.++
T Consensus 2 ~i~v~g~~~~~~~~~~~~i~~~l~~~~i~i~~i~~~~~~~~~s~~v~~~~ 51 (60)
T cd04868 2 KVSIVGVGMRGTPGVAAKIFSALAEAGINVDMISQSESEVNISFTVDESD 51 (60)
T ss_pred EEEEECCCCCCCCCHHHHHHHHHHHCCCcEEEEEcCCCcEEEEEEEeHHH
Confidence 5788888888889999999999999999999999876 78999998754
|
This CD includes each of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). Typically, AK consists of two ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Aspartokinase is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind am |
| >cd04920 ACT_AKiii-DAPDC_2 ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00025 Score=56.06 Aligned_cols=50 Identities=12% Similarity=0.229 Sum_probs=45.7
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
++|++.|.+|...+|+++++|+.|++.+|++.+..+|+.++||.++.++.
T Consensus 1 a~VsvVG~g~~~~~gv~~~~~~~L~~~~i~~i~~~~s~~~is~vv~~~d~ 50 (63)
T cd04920 1 AAVSLVGRGIRSLLHKLGPALEVFGKKPVHLVSQAANDLNLTFVVDEDQA 50 (63)
T ss_pred CEEEEECCCcccCccHHHHHHHHHhcCCceEEEEeCCCCeEEEEEeHHHH
Confidence 46899999999999999999999999999998889999999999998763
|
This CD includes the second of two ACT domains of a bifunctional AKIII (LysC)-like aspartokinase/meso-diaminopimelate decarboxylase (DAPDC) bacterial protein. Aspartokinase (AK) is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The lysA gene encodes the enzyme DAPDC, a pyridoxal-5'-phosphate (PLP)-dependent enzyme which catalyzes the final step in the lysine biosynthetic pathway converting meso-diaminopimelic acid (DAP) to l-lysine. Tandem ACT domains are positioned centrally with the AK catalytic domain N-terminal and the DAPDC domains C-terminal. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04892 ACT_AK-like_2 ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase) | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00053 Score=52.89 Aligned_cols=50 Identities=26% Similarity=0.551 Sum_probs=43.7
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc--CceeEEEeCCchh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--EVSLSLTLDPSKL 445 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS--e~sIS~~I~~~~~ 445 (557)
++|++.+.++.+.+++.+++|+.|++++|++++++++ +.+++|+++.++.
T Consensus 1 ~~i~i~g~~~~~~~~~~~~i~~~l~~~~i~v~~i~~~~~~~~i~~~v~~~~~ 52 (65)
T cd04892 1 ALVSVVGAGMRGTPGVAARIFSALAEAGINIIMISQGSSEVNISFVVDEDDA 52 (65)
T ss_pred CEEEEECCCCCCCccHHHHHHHHHHHCCCcEEEEEcCCCceeEEEEEeHHHH
Confidence 3688888889899999999999999999999999874 4889999988653
|
This CD includes the second of two ACT domains C-terminal to the catalytic domain of aspartokinase (AK; 4-L-aspartate-4-phosphotransferase). The exception in this group, is the inclusion of the first ACT domain of the bifunctional aspartokinase - homoserine dehydrogenase-like enzyme group (ACT_AKi-HSDH-ThrA-like_1) which includes the monofunctional, threonine-sensitive, aspartokinase found in Methanococcus jannaschii and other related archaeal species. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. AK is the first enzyme in the pathway of the biosynthesis of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. One mechanism for the regulation of this pathway is by the production of several isoenzymes of AK with different repressors an |
| >PRK09181 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0013 Score=72.40 Aligned_cols=111 Identities=12% Similarity=0.110 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhCCceEEEEEccCc--eeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccc
Q 008693 411 FLAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSS 487 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstSe~--sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~ 487 (557)
+..+.++...+++|++..-++... .=++..+... ..-..+..|+..+++++|++.|. |...+
T Consensus 279 LHp~ti~pa~~~~Ipi~V~nt~~p~~~GT~I~~~~~---------------~~~~~ik~It~~~~~~~i~i~~~~~~~~~ 343 (475)
T PRK09181 279 IHPKAAKGLRQAGIPLRIKNTFEPEHPGTLITKDYV---------------SEQPRVEIIAGSDKVFALEVFDQDMVGED 343 (475)
T ss_pred cCHHHHHHHHHcCCeEEEecCCCCCCCCeEEecCcc---------------cccccceeEeccCCEEEEEEcCCCCCCcc
Confidence 456778889999999988765432 2222222110 00112456788889999999996 77889
Q ss_pred hHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecc-c-HHHHHHHHHHHhcc
Q 008693 488 LILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDD-E-AEQCVRALHETFFE 538 (557)
Q Consensus 488 ~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~-d-~~kAv~~LH~~f~~ 538 (557)
|+++++|+.|++.+|+|.++++ |+.+++|+|+.+ + .+++++.|+++|-.
T Consensus 344 g~~~~if~~l~~~~i~v~~i~s--s~~sis~~v~~~~~~~~~~~~~L~~~~~~ 394 (475)
T PRK09181 344 GYDLEILEILTRHKVSYISKAT--NANTITHYLWGSLKTLKRVIAELEKRYPN 394 (475)
T ss_pred hHHHHHHHHHHHcCCeEEEEEe--cCcEEEEEEcCChHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987 689999999988 3 67889999988854
|
|
| >cd04921 ACT_AKi-HSDH-ThrA-like_1 ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH) | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00091 Score=54.90 Aligned_cols=51 Identities=35% Similarity=0.565 Sum_probs=45.0
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cCceeEEEeCCchh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SEVSLSLTLDPSKL 445 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se~sIS~~I~~~~~ 445 (557)
+++|++.+.++.+.+++.+++|+.|++.+|+++|+++ ++.+++|+++.++.
T Consensus 1 ~~~I~vvg~~~~~~~~~~~~i~~~L~~~~I~v~~i~~~~~~~~isf~v~~~d~ 53 (80)
T cd04921 1 VALINIEGTGMVGVPGIAARIFSALARAGINVILISQASSEHSISFVVDESDA 53 (80)
T ss_pred CEEEEEEcCCCCCCccHHHHHHHHHHHCCCcEEEEEecCCcceEEEEEeHHHH
Confidence 4788999989999999999999999999999999974 56789999988764
|
This CD includes the first of two ACT domains of the bifunctional enzyme aspartokinase (AK) - homoserine dehydrogenase (HSDH). The ACT domains are positioned between the N-terminal catalytic domain of AK and the C-terminal HSDH domain found in bacteria (Escherichia coli (EC) ThrA) and higher plants (Zea mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. HSDH is the first committed reaction in the branch of the pathway that leads to Thr and Met. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pat |
| >PRK09034 aspartate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.00083 Score=73.74 Aligned_cols=97 Identities=14% Similarity=0.258 Sum_probs=71.7
Q ss_pred HhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCC-------------cceeeEEeeeccEEEEEEEecCccchhhHHH
Q 008693 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS-------------KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLA 413 (557)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~-------------~~~Vt~Is~~~nialItI~~~~m~~~~g~la 413 (557)
.+-+..+.++||++...++.. .. =++..+..+.. ...+.+|+..+++++|++.|.+|.+.+|+++
T Consensus 326 a~if~~la~~~I~Vd~i~ss~-~s-is~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~a 403 (454)
T PRK09034 326 RKVLQILEDHGISYEHMPSGI-DD-LSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAA 403 (454)
T ss_pred HHHHHHHHHcCCeEEEEcCCC-cE-EEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHHH
Confidence 355778888999877663211 01 11121211110 1124689999999999999999999999999
Q ss_pred HHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 414 KVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 414 ~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
++|+.|+++||+|+|++ +|+.+++|+++.++.
T Consensus 404 rif~aL~~~~InV~mIsq~~Se~~Is~vV~~~d~ 437 (454)
T PRK09034 404 KITKALAEANINIQMINQGSSEISIMFGVKNEDA 437 (454)
T ss_pred HHHHHHHHCCCCEEEEEecCCcceEEEEEcHHHH
Confidence 99999999999999998 578999999998763
|
|
| >cd04917 ACT_AKiii-LysC-EC_2 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0016 Score=51.35 Aligned_cols=48 Identities=17% Similarity=0.427 Sum_probs=40.8
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCch
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSK 444 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~ 444 (557)
+++|++.|.+|.+.++..+++|+.|++ +++.+++ +|+.+++|.++.++
T Consensus 1 ~alIsvvG~~~~~~~~v~~~i~~~L~~--i~i~~i~~~~s~~~is~~V~~~~ 50 (64)
T cd04917 1 LALVALIGNDISETAGVEKRIFDALED--INVRMICYGASNHNLCFLVKEED 50 (64)
T ss_pred CeEEEEECCCccCCcCHHHHHHHHHHh--CCeEEEEEecCccEEEEEEeHHH
Confidence 478999999999999999999999976 5555554 77889999998876
|
This CD includes the second of two ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in bacteria (Escherichia coli (EC) LysC). Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. The E. coli AKIII (LysC) binds two feedback allosteric inhibitor lysine molecules at the dimer interface located between the ACT1 domain of two subunits. The second ACT domain (ACT2), this CD, is not involved in the binding of heterotrophic effectors. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PLN02551 aspartokinase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0026 Score=70.82 Aligned_cols=100 Identities=15% Similarity=0.239 Sum_probs=75.1
Q ss_pred HHHHHHHHHHhCCceEEEEEccCc--eeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccc
Q 008693 411 FLAKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSS 487 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstSe~--sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~ 487 (557)
+..+.++...+++|++..-++... .-++.....+. . -..+..|+..+|+++|++.|. |...+
T Consensus 316 lhp~ai~pa~~~~Ipi~vknt~~p~~~GT~I~~~~~~--------------~-~~~v~~It~~~~v~li~i~~~~m~~~~ 380 (521)
T PLN02551 316 LHPQSMRPAREGDIPVRVKNSYNPTAPGTLITKTRDM--------------S-KAVLTSIVLKRNVTMLDIVSTRMLGQY 380 (521)
T ss_pred cCHHHHHHHHHCCceEEEEecCCCCCCCcEEeccccc--------------C-CCcccceecCCCeEEEEEecCCCCCcc
Confidence 346777888899999888765322 12222221110 0 012556888899999999996 77889
Q ss_pred hHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHH
Q 008693 488 LILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ 527 (557)
Q Consensus 488 ~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~k 527 (557)
|+++++|+.|+++||+|.||+| |+.+|+|.++.++..+
T Consensus 381 g~~arvf~~l~~~~I~Vd~Iss--Se~sIs~~v~~~~~~~ 418 (521)
T PLN02551 381 GFLAKVFSTFEDLGISVDVVAT--SEVSISLTLDPSKLWS 418 (521)
T ss_pred cHHHHHHHHHHHcCCcEEEEec--cCCEEEEEEehhHhhh
Confidence 9999999999999999999987 7899999999998755
|
|
| >cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0027 Score=51.55 Aligned_cols=61 Identities=18% Similarity=0.364 Sum_probs=50.5
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEK 464 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~ 464 (557)
..|.+.+.+|.|.+|+.+++|+.|+++++++.+..++..+|+.++..+. ..++++..+|++
T Consensus 2 ~alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~--------k~~~r~~~~Le~ 62 (71)
T cd04910 2 FALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSL--------KTIKRLTEDLEN 62 (71)
T ss_pred eEEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCH--------HHHHHHHHHHHH
Confidence 4578999999999999999999999999999999999999999997653 124555555543
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase |
| >cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0018 Score=51.92 Aligned_cols=48 Identities=23% Similarity=0.362 Sum_probs=39.2
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+.+++.+ ....+|+++++|+.|+++||+++||+.+..+++|+++.++.
T Consensus 2 ~~vtv~~--~~~~~~~~a~if~~La~~~InvDmI~~~~~~isFtv~~~d~ 49 (67)
T cd04914 2 TQIKVKA--KDNENDLQQRVFKALANAGISVDLINVSPEEVIFTVDGEVA 49 (67)
T ss_pred eEEEEec--CCCCccHHHHHHHHHHHcCCcEEEEEecCCCEEEEEchhhH
Confidence 4567775 34568999999999999999999997554479999998764
|
This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and |
| >cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0031 Score=50.50 Aligned_cols=56 Identities=20% Similarity=0.402 Sum_probs=45.4
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH 533 (557)
+.|++.|.- ..+++++++|+.|+++||+|.||++. ++ +++|.++..|.+++.+.|-
T Consensus 2 ~~vtv~~~~-~~~~~~a~if~~La~~~InvDmI~~~-~~-~isFtv~~~d~~~~~~il~ 57 (67)
T cd04914 2 TQIKVKAKD-NENDLQQRVFKALANAGISVDLINVS-PE-EVIFTVDGEVAEKAVDILE 57 (67)
T ss_pred eEEEEecCC-CCccHHHHHHHHHHHcCCcEEEEEec-CC-CEEEEEchhhHHHHHHHHH
Confidence 567777742 34789999999999999999999875 33 7999999999999865543
|
This CD includes the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) strain 168), Clostridia, and Actinobacteria, bacterial species. In B. subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and |
| >PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0032 Score=73.65 Aligned_cols=110 Identities=12% Similarity=0.120 Sum_probs=84.2
Q ss_pred HHHHHHHHHHhCCceEEEEEccCce--eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccc
Q 008693 411 FLAKVFSTFEDLGISVDVVATSEVS--LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSS 487 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstSe~s--IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~ 487 (557)
+..+.++...+++|++..-++.... =++...... .-.....|+..+++++|++.|. +...+
T Consensus 268 lHp~ti~pa~~~~Ipi~V~ntf~p~~~GT~I~~~~~----------------~~~~v~~It~~~~v~~i~i~~~~~~g~~ 331 (810)
T PRK09466 268 LHARTLQPVSGSDIDLQLRCSYQPEQGSTRIERVLA----------------SGTGARIVTSLDDVCLIELQVPASHDFK 331 (810)
T ss_pred cCHHHHHHHHHcCCeEEEecCCCCCCCceEEecCcc----------------cccceeeeeccCCEEEEEEecCCcCCcc
Confidence 3467788889999998877654321 222222110 0011345677789999999986 66778
Q ss_pred hHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008693 488 LILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 488 ~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
++++++|+.|++++|++.+|+|++++.+++|.++.++.+++.+.|++..
T Consensus 332 g~~~~if~~l~~~~I~v~~i~~~~s~~sis~~i~~~~~~~~~~~l~~~~ 380 (810)
T PRK09466 332 LAQKELDQLLKRAQLRPLAVGVHPDRQLLQLAYTSEVADSALKLLDDAA 380 (810)
T ss_pred hHHHHHHHHHHHCCCeEEEEEecCCCcEEEEEEeHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999998864
|
|
| >PRK09084 aspartate kinase III; Validated | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.002 Score=70.63 Aligned_cols=106 Identities=15% Similarity=0.223 Sum_probs=75.8
Q ss_pred HHHHHHHHhCCceEEEEEccCc--eeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchH
Q 008693 413 AKVFSTFEDLGISVDVVATSEV--SLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLI 489 (557)
Q Consensus 413 a~If~~L~~~gI~Vd~IstSe~--sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v 489 (557)
.+.+....+.+|++....+.+. .-++..+... .-..+..|+..+++++|++-|. |...+|+
T Consensus 259 ~~~~~~~~~~~i~i~i~~~~~~~~~GT~I~~~~~----------------~~~~v~~it~~~~i~lItv~~~~~~~~~g~ 322 (448)
T PRK09084 259 PATLLPAVRSNIPVFVGSSKDPEAGGTWICNDTE----------------NPPLFRAIALRRNQTLLTLHSLNMLHARGF 322 (448)
T ss_pred HHHHHHHHHcCCcEEEEeCCCCCCCceEEecCCC----------------CCCeeEEEEeeCCEEEEEEecCCCCccccH
Confidence 4556667788888887764321 1222222110 0013557888899999999996 7778999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH-HHHHHHHHHHh
Q 008693 490 LEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA-EQCVRALHETF 536 (557)
Q Consensus 490 ~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~-~kAv~~LH~~f 536 (557)
++++|+.|++++|+|.||+| |+.+|+|.|++++. .++...+++++
T Consensus 323 ~a~if~~l~~~~I~Vd~I~s--se~sIs~~i~~~~~~~~~~~~~~~~l 368 (448)
T PRK09084 323 LAEVFGILARHKISVDLITT--SEVSVSLTLDTTGSTSTGDTLLTQAL 368 (448)
T ss_pred HHHHHHHHHHcCCeEEEEec--cCcEEEEEEechhhhhhhhHHHHHHH
Confidence 99999999999999999997 78999999999984 34444444444
|
|
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.035 Score=49.01 Aligned_cols=113 Identities=20% Similarity=0.294 Sum_probs=81.8
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEE---ccCcee-EEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEc
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVA---TSEVSL-SLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIG 481 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~Is---tSe~sI-S~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG 481 (557)
.+.||=++.+.+.|.++|||+...+ +++..| .+.++..+. ..+. |+. ...+ +..-.+++
T Consensus 11 ENk~GRL~~~~~~L~eagINiRA~tiAdt~dFGIiRmvV~~~d~---------A~~~---Lee-~gF~----Vr~~dVla 73 (142)
T COG4747 11 ENKPGRLASVANKLKEAGINIRAFTIADTGDFGIIRMVVDRPDE---------AHSV---LEE-AGFT----VRETDVLA 73 (142)
T ss_pred cCCcchHHHHHHHHHHcCCceEEEEeccccCcceEEEEcCChHH---------HHHH---HHH-CCcE----EEeeeEEE
Confidence 4678989999999999999999876 566654 677776642 1222 222 1121 12334566
Q ss_pred -cccccchHHHHHHHHHHhCCCcEEEEEec-CCceEEEEEEecccHHHHHHHHHHH
Q 008693 482 -NVQRSSLILEKAFRVLRRSGVNVQMISQG-ASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 482 -~~~~~~~v~~rif~~L~~~gInI~~Isqg-sSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
+|.+.||-+.++..+|..++||+.-|..- .....-.++++-+|.+++.++|.+.
T Consensus 74 VEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek~KAlli~r~ed~d~~~~aLed~ 129 (142)
T COG4747 74 VEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEKQKALLIVRVEDIDRAIKALEDA 129 (142)
T ss_pred EEecCCCCcHHHHHHHHhhcCcCceeeeeeeecCceEEEEEEhhHHHHHHHHHHHc
Confidence 48889999999999999999998643221 1346677889999999999999876
|
|
| >PRK05925 aspartate kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0078 Score=65.79 Aligned_cols=96 Identities=9% Similarity=0.149 Sum_probs=70.9
Q ss_pred HhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCc----------ceeeEEeeeccEEEEEEEecCccchhhHHHHHH
Q 008693 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK----------AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVF 416 (557)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~----------~~Vt~Is~~~nialItI~~~~m~~~~g~la~If 416 (557)
.+-+..+.++||++.+.++.. ... ++..+..+... ..+..|...+++++|++.|.+|.+ +++.+++|
T Consensus 316 ~~if~~l~~~~I~vd~i~s~~-~si-s~~i~~~~~~~~~~~~l~~~l~~~~~i~~~~~~a~VsvVG~gm~~-~~v~~~~~ 392 (440)
T PRK05925 316 EDVLGILRSLGIVPGLVMAQN-LGV-YFTIDDDDISEEYPQHLTDALSAFGTVSCEGPLALITMIGAKLAS-WKVVRTFT 392 (440)
T ss_pred HHHHHHHHHcCCcEEEEeccC-CEE-EEEEechhccHHHHHHHHHHhcCCceEEEECCEEEEEEeCCCccc-ccHHHHHH
Confidence 467888999999985543321 111 11122111100 123467888999999999999987 78999999
Q ss_pred HHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 417 STFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 417 ~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+.|++.||++.++++|+.++||+|+.++.
T Consensus 393 ~aL~~~~Ini~~i~~s~~~is~vV~~~d~ 421 (440)
T PRK05925 393 EKLRGYQTPVFCWCQSDMALNLVVNEELA 421 (440)
T ss_pred HHHhhCCCCEEEEECCCceEEEEEehHHH
Confidence 99999999999999999999999998763
|
|
| >PRK08210 aspartate kinase I; Reviewed | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0042 Score=67.17 Aligned_cols=99 Identities=20% Similarity=0.301 Sum_probs=74.8
Q ss_pred cchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCc--ce---e-eEEeeeccEEEEEEEecCccchhhHHHHHHH
Q 008693 344 VLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK--AV---L-TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFS 417 (557)
Q Consensus 344 vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~--~~---V-t~Is~~~nialItI~~~~m~~~~g~la~If~ 417 (557)
.+..+-+..+.++||++....... + .+++.....+..+ .. . ..+...+++++|++.|.+|.+.+|+++++|+
T Consensus 284 g~la~If~~L~~~~I~i~~i~~~~-~-~is~~v~~~~~~~a~~~l~~~~~~v~~~~~~a~isvvG~~~~~~~g~~~~i~~ 361 (403)
T PRK08210 284 DLQQEVFKALAEAGISVDFINIFP-T-EVVFTVSDEDSEKAKEILENLGLKPSVRENCAKVSIVGAGMAGVPGVMAKIVT 361 (403)
T ss_pred hHHHHHHHHHHHcCCeEEEEEecC-c-eEEEEEcHHHHHHHHHHHHHhCCcEEEeCCcEEEEEEcCCcCCCccHHHHHHH
Confidence 344556788899999988765442 2 3444433221110 00 0 1467789999999999999999999999999
Q ss_pred HHHhCCceEEEEEccCceeEEEeCCch
Q 008693 418 TFEDLGISVDVVATSEVSLSLTLDPSK 444 (557)
Q Consensus 418 ~L~~~gI~Vd~IstSe~sIS~~I~~~~ 444 (557)
.|++.||++.++++|+.+++|+++.++
T Consensus 362 aL~~~~I~i~~~~~s~~~is~vv~~~~ 388 (403)
T PRK08210 362 ALSEEGIEILQSADSHTTIWVLVKEED 388 (403)
T ss_pred HHHhCCCCEEEEecCCCEEEEEEcHHH
Confidence 999999999999999999999999876
|
|
| >cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.006 Score=46.36 Aligned_cols=46 Identities=30% Similarity=0.484 Sum_probs=37.7
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC-----ceeEEEeCCch
Q 008693 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSK 444 (557)
Q Consensus 397 lItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe-----~sIS~~I~~~~ 444 (557)
+|++.+ +.+.+|+++++|+.|.++||++++++++. .+++|++++++
T Consensus 2 ~v~v~~--~~~~~~~~~~i~~~L~~~~i~i~~i~~~~~~~~~~~is~~v~~~~ 52 (61)
T cd04891 2 QVTIKG--VPDKPGVAAKIFSALAEAGINVDMIVQSVSRGGTTDISFTVPKSD 52 (61)
T ss_pred EEEEec--CCCCCcHHHHHHHHHHHcCCcEEEEEEcCCCCCcEEEEEEEeHHH
Confidence 466654 56789999999999999999999998643 66889998765
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, as well as, the first and third, of four, ACT domains present in cyanobacteria AK. Also included are the N-terminal of the two ACT domains of the diaminopimelate-sensitive aspartokinase isoenzyme AKI found in Bacilli (Bacillus subtilis strain 168), Clostridia, and Actinobacteria bacterial species. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0094 Score=70.60 Aligned_cols=107 Identities=16% Similarity=0.272 Sum_probs=80.0
Q ss_pred HHHHHHHHhCCceEEEEEccCce--eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchH
Q 008693 413 AKVFSTFEDLGISVDVVATSEVS--LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLI 489 (557)
Q Consensus 413 a~If~~L~~~gI~Vd~IstSe~s--IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v 489 (557)
.+.++...+.||++...++.... =++..... ..-..+..|+..+|+++|++-|. |...+++
T Consensus 275 ~~a~~~a~~~~i~i~v~~~~~~~~~gT~I~~~~----------------~~~~~v~~It~~~~v~lItv~~~~~~~~~g~ 338 (861)
T PRK08961 275 PRSIKPCRDAGIPMAILDTERPDLSGTSIDGDA----------------EPVPGVKAISRKNGIVLVSMETIGMWQQVGF 338 (861)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCCCCccEEeCCC----------------CCCCcceeEEEECCEEEEEEecCCccccccH
Confidence 45667778899998887653221 12222111 00123567888999999999996 7788999
Q ss_pred HHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccH---HHHHHHHHHHhc
Q 008693 490 LEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEA---EQCVRALHETFF 537 (557)
Q Consensus 490 ~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~---~kAv~~LH~~f~ 537 (557)
++++|+.|++++|+|.||++ |+.++++.+++.+. +++++.|.++|-
T Consensus 339 ~a~if~~la~~~I~Vd~I~s--se~sis~~i~~~~~~~~~~~~~~l~~~l~ 387 (861)
T PRK08961 339 LADVFTLFKKHGLSVDLISS--SETNVTVSLDPSENLVNTDVLAALSADLS 387 (861)
T ss_pred HHHHHHHHHHcCCeEEEEEc--CCCEEEEEEccccccchHHHHHHHHHHHh
Confidence 99999999999999999987 78999999999885 367777777764
|
|
| >KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0072 Score=65.40 Aligned_cols=123 Identities=16% Similarity=0.228 Sum_probs=82.2
Q ss_pred hhchHHHHHHHHHHHHHcCCceEEeccceeE--EEEec--------CCCC-ceeeecchHHHHHHHhhchhcCCceEEEc
Q 008693 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIG--FITTD--------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVT 267 (557)
Q Consensus 199 s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~--iit~~--------~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~ 267 (557)
-+||.--. ++ ..|++.|-.++..+....- +++.+ +|+. .++...+.++++ ++++.|.+|+++
T Consensus 170 ~~~E~n~~-lv-~nL~~~g~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~-----~l~~~G~mp~L~ 242 (520)
T KOG2436|consen 170 VSLEANLN-LV-INLSQLGTRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIR-----HLLDAGSMPLLR 242 (520)
T ss_pred chhhhhhH-HH-HHHHHhhceeccccccccccceeecccccccccceeeeecccceechhhhh-----hhhhCCCchheh
Confidence 34665333 34 4588999888887765321 23333 2222 233344555443 345788999998
Q ss_pred CCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHH
Q 008693 268 GFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY 339 (557)
Q Consensus 268 Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~ 339 (557)
- .+.+ ..|+++|.+ +|..|..+|.+|+++++++.+|+.=+...+ .+.++.++-+|...+..
T Consensus 243 s-la~T-aSGqvlnvN---a~~~a~elA~~L~~~kli~l~d~g~~l~e~------ge~~S~l~l~~e~~~l~ 303 (520)
T KOG2436|consen 243 S-LAAT-ASGQVLNVN---ADEVAGELALALGPDKLILLMDKGRILKEN------GEDISSLILQEEDAGLR 303 (520)
T ss_pred h-hccc-CccceEEee---HHHHhhHHHhccCcceeEEecccccccccC------cccccccccchhHhhhh
Confidence 8 5777 489999999 999999999999999999999972243333 45567777776666654
|
|
| >PRK08841 aspartate kinase; Validated | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.0083 Score=64.67 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=68.0
Q ss_pred HhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCC---cceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCC
Q 008693 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMS---KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLG 423 (557)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~---~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~g 423 (557)
++.+..+.+++|++....... ..=+++.+..+.. ......+...+++++|++.|.+ .+|+.+++|+.|.+++
T Consensus 269 ~~i~~~l~~~~i~v~~i~~~~--~~~~~~v~~~~~~~~~~~~~~~i~~~~~~a~vsvVG~~---~~gv~~~~~~aL~~~~ 343 (392)
T PRK08841 269 PSLTKQCQMLGIEVWNVIEEA--DRAQIVIKQDACAKLKLVFDDKIRNSESVSLLTLVGLE---ANGMVEHACNLLAQNG 343 (392)
T ss_pred HHHHHHHHHcCCCEEEEEecC--CcEEEEECHHHHHHHHHhCcccEEEeCCEEEEEEECCC---ChHHHHHHHHHHHhCC
Confidence 455677888999977665321 1112222222111 1112347778999999999975 4999999999999999
Q ss_pred ceEEEEEccCceeEEEeCCchh
Q 008693 424 ISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 424 I~Vd~IstSe~sIS~~I~~~~~ 445 (557)
|++.++++|+.+|+|.++.++.
T Consensus 344 I~i~~i~~s~~~is~vv~~~~~ 365 (392)
T PRK08841 344 IDVRQCSTEPQSSMLVLDPANV 365 (392)
T ss_pred CCEEEEECCCcEEEEEEeHHHH
Confidence 9999999999999999998764
|
|
| >cd04910 ACT_AK-Ectoine_1 ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.017 Score=46.87 Aligned_cols=63 Identities=11% Similarity=0.090 Sum_probs=55.0
Q ss_pred EEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 476 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 476 iIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
.|-+-+. |...+|+..++|+.|+++++++.+..+.+..+++++..+.+..+++++.|.+.|-.
T Consensus 3 alevfdqdMvG~~g~d~~i~~~l~~~~v~ii~K~~nANtit~yl~~~~k~~~r~~~~Le~~~p~ 66 (71)
T cd04910 3 ALEVFDQDMVGEVGYDLEILELLQRFKVSIIAKDTNANTITHYLAGSLKTIKRLTEDLENRFPN 66 (71)
T ss_pred EEEEeCCCccCChhHHHHHHHHHHHcCCeEEEEecCCCeEEEEEEcCHHHHHHHHHHHHHhCcc
Confidence 4567775 77788999999999999999999999988888888888888999999999998854
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and various other halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase |
| >COG3603 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.019 Score=50.70 Aligned_cols=67 Identities=21% Similarity=0.326 Sum_probs=58.2
Q ss_pred heeecccceeEEEEEccc-cccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 466 AIVNLLQHRSIISLIGNV-QRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 466 ~~i~~~~~~aiIsIVG~~-~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
..|....+-+.+.+-|.. -.-+|+++.+.+.|+++||.|..+|+-..++ ++|+++|.++|+++|.++
T Consensus 55 ~~V~~~~GW~~lk~~gpf~FgltGilasV~~pLsd~gigIFavStydtDh---iLVr~~dLekAv~~L~ea 122 (128)
T COG3603 55 DVVQIEKGWSCLKFEGPFDFGLTGILASVSQPLSDNGIGIFAVSTYDTDH---ILVREEDLEKAVKALEEA 122 (128)
T ss_pred cceEecCCeEEEEEeccccCCcchhhhhhhhhHhhCCccEEEEEeccCce---EEEehhhHHHHHHHHHHc
Confidence 346667788899999974 5678999999999999999999999977666 799999999999999875
|
|
| >cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=46.01 Aligned_cols=48 Identities=23% Similarity=0.438 Sum_probs=38.7
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-----CceeEEEeCCchh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKL 445 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-----e~sIS~~I~~~~~ 445 (557)
++|++.+ +.+.+|+++++|+.|+++||+++++.++ ..+++|+++.++.
T Consensus 2 ~~v~v~~--~~~~~g~~~~i~~~L~~~~I~i~~i~~~~~~~~~~~is~~v~~~d~ 54 (75)
T cd04913 2 AKITLRG--VPDKPGVAAKIFGALAEANINVDMIVQNVSRDGTTDISFTVPKSDL 54 (75)
T ss_pred eEEEECC--CCCCCcHHHHHHHHHHHcCCeEEEEEeCCCCCCcEEEEEEecHHHH
Confidence 5677754 5678999999999999999999999764 2368899987653
|
This CD includes the N-terminal of the two ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In corynebacteria and other various Gram-positive bacteria, the DAP-lysine pathway is fee |
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.019 Score=44.61 Aligned_cols=54 Identities=28% Similarity=0.424 Sum_probs=44.7
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc-----eEEEEEEecccHHHHHHHHHHHh
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASK-----VNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsSe-----~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
+.+.||+++++++.|+++|+||..+.+..+. ..+.+..++.+.+++++.|++.+
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 65 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALP 65 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHT
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHccc
Confidence 4578999999999999999999998887664 44666677788889999998753
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.58 Score=45.42 Aligned_cols=141 Identities=13% Similarity=0.180 Sum_probs=85.2
Q ss_pred ccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc----cCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhee
Q 008693 393 RNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIV 468 (557)
Q Consensus 393 ~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist----Se~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i 468 (557)
.+..+||+.|. ++||+.+++.+.|.++|.||.-+.+ ++++..+.+..... ....++..|..+.+++.-...+
T Consensus 6 ~~~lviTviG~---DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs~~~~-~~~~le~~L~~l~~~~~L~i~v 81 (190)
T PRK11589 6 QHYLVITALGA---DRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLSGSWN-AITLIESTLPLKGAELDLLIVM 81 (190)
T ss_pred ccEEEEEEEcC---CCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEeCChh-HHHHHHHHHHhhhhhcCeEEEE
Confidence 35567888874 6899999999999999999987754 36666677754321 1222333333332221100011
Q ss_pred ---ec--ccc---eeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecC-----Cc-----eEEEEEEecc----cHH
Q 008693 469 ---NL--LQH---RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA-----SK-----VNISLIVNDD----EAE 526 (557)
Q Consensus 469 ---~~--~~~---~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqgs-----Se-----~sIs~vV~~~----d~~ 526 (557)
.. ... -..|+++| .+.||+..++.+.|++.||||.-+++.. ++ ..+.+-++.. +..
T Consensus 82 ~~~~~~~~~~~~~~~~v~v~G--~DrPGIV~~vT~~la~~~iNI~~L~T~~~~a~~~~~~lf~~~~~v~lP~~~~~~~L~ 159 (190)
T PRK11589 82 KRTTARPRPAMPATVWVQVEV--ADSPHLIERFTALFDSHHMNIAELVSRTQPAEGERPAQLHIQITAHSPASQDAANIE 159 (190)
T ss_pred EeccccccccCCceEEEEEEE--CCCCCHHHHHHHHHHHcCCChhheEEeeecCCCCCcccEEEEEEEEcCCCCCHHHHH
Confidence 10 011 14677777 4789999999999999999998655432 11 2334444443 344
Q ss_pred HHHHHHHHHhccC
Q 008693 527 QCVRALHETFFES 539 (557)
Q Consensus 527 kAv~~LH~~f~~~ 539 (557)
.+++.|-+++..+
T Consensus 160 ~~l~~l~~eL~vd 172 (190)
T PRK11589 160 QAFKALCTELNAQ 172 (190)
T ss_pred HHHHHHHHHhCce
Confidence 5566666666554
|
|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.32 Score=39.03 Aligned_cols=56 Identities=23% Similarity=0.379 Sum_probs=41.3
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEcc---C--ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhe
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATS---E--VSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI 467 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstS---e--~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~ 467 (557)
.+++|.++++++.|++.|++++++.++ + ..++|+++.++.. ..++.+++.|+++..
T Consensus 8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~------~~l~~l~~~L~~i~~ 68 (76)
T cd04888 8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMN------GDIDELLEELREIDG 68 (76)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchH------HHHHHHHHHHhcCCC
Confidence 467999999999999999999999752 2 4578888765531 246677777776443
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.1 Score=44.08 Aligned_cols=63 Identities=27% Similarity=0.354 Sum_probs=50.4
Q ss_pred eeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqgs--Se~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
.++|+++| ++.+|+.+.++.+|+++|+||+=|+|.- .--++.++|+-.........+.++|-.
T Consensus 3 ~avITV~G--kDr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~~~~~d~~~lr~~l~~ 67 (90)
T COG3830 3 RAVITVIG--KDRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDISKEVVDFAALRDELAA 67 (90)
T ss_pred eEEEEEEc--CCCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCChHhccHHHHHHHHHH
Confidence 57899999 4679999999999999999999999865 345677788887777666677766643
|
|
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.33 Score=38.92 Aligned_cols=55 Identities=18% Similarity=0.285 Sum_probs=45.1
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecC---CceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 484 QRSSLILEKAFRVLRRSGVNVQMISQGA---SKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 484 ~~~~~v~~rif~~L~~~gInI~~Isqgs---Se~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
.+.+|.++++++.|++.|+||.++++.. ....++|.++..+.+..++.|.+.+-.
T Consensus 8 ~d~~g~l~~I~~~la~~~inI~~i~~~~~~~~~~~i~~~v~v~~~~~~l~~l~~~L~~ 65 (76)
T cd04888 8 EHRPGVLSKVLNTIAQVRGNVLTINQNIPIHGRANVTISIDTSTMNGDIDELLEELRE 65 (76)
T ss_pred cCCCchHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEEEcCchHHHHHHHHHHHhc
Confidence 4568999999999999999999998843 235689999999988788888777653
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.46 Score=36.66 Aligned_cols=27 Identities=30% Similarity=0.500 Sum_probs=24.4
Q ss_pred ccchhhHHHHHHHHHHhCCceEEEEEc
Q 008693 405 MLGQYGFLAKVFSTFEDLGISVDVVAT 431 (557)
Q Consensus 405 m~~~~g~la~If~~L~~~gI~Vd~Ist 431 (557)
+.++||.++++++.|+++|+||..+.+
T Consensus 7 ~~drpG~l~~v~~~la~~~inI~~~~~ 33 (66)
T PF01842_consen 7 VPDRPGILADVTEILADHGINIDSISQ 33 (66)
T ss_dssp EETSTTHHHHHHHHHHHTTEEEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHcCCCHHHeEE
Confidence 457899999999999999999999864
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.86 Score=42.37 Aligned_cols=63 Identities=19% Similarity=0.444 Sum_probs=44.2
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc---C--ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS---E--VSLSLTLDPSKLWSRELIQQELDHVVEELEKIA 466 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS---e--~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~ 466 (557)
.+.+.+. +.+.+|.++++++.|++.|+||+.+.++ + .+++|+++-++.. ..++.+++.|+.+.
T Consensus 69 ~vtL~i~---l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~------~~L~~Li~~L~~i~ 136 (147)
T PRK04435 69 IITLSLL---LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSME------GDIDELLEKLRNLD 136 (147)
T ss_pred EEEEEEE---EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChH------HHHHHHHHHHHcCC
Confidence 3344554 3468999999999999999999999753 1 4577777665431 24667777777643
|
|
| >cd04911 ACT_AKiii-YclM-BS_1 ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.46 Score=39.14 Aligned_cols=60 Identities=17% Similarity=0.310 Sum_probs=45.4
Q ss_pred EEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHH-----HHHHHHHHHhcc
Q 008693 477 ISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE-----QCVRALHETFFE 538 (557)
Q Consensus 477 IsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~-----kAv~~LH~~f~~ 538 (557)
|.+.-. |....|+..|+++.|++.||++..+.+ +.-++|+++++++.. +.++.|++++..
T Consensus 4 I~i~K~~Mn~evGF~rk~L~I~E~~~is~Eh~PS--GID~~Siii~~~~~~~~~~~~i~~~i~~~~~p 69 (76)
T cd04911 4 IYISKYLMNREVGFGRKLLSILEDNGISYEHMPS--GIDDISIIIRDNQLTDEKEQKILAEIKEELHP 69 (76)
T ss_pred EehhHhhccchhcHHHHHHHHHHHcCCCEeeecC--CCccEEEEEEccccchhhHHHHHHHHHHhcCC
Confidence 333344 556689999999999999999999987 567789999999544 456666666544
|
This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis (BS) YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. Bacillus subtilis YclM is reported to be a single polypeptide of 50 kD. AKIII from Bacillus subtilis strain 168 is induced by lysine and repressed by threonine and it is synergistically inhibited by lysine and threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.37 Score=50.94 Aligned_cols=70 Identities=17% Similarity=0.373 Sum_probs=59.5
Q ss_pred heeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHH--HHH-HHHHHHhc
Q 008693 466 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE--QCV-RALHETFF 537 (557)
Q Consensus 466 ~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~--kAv-~~LH~~f~ 537 (557)
..|...+|+.++-|-.+ |....|+++++|..|.+.||.|..|++ ||.+||+-.+.++.. +.+ +.||+.+.
T Consensus 385 TsI~lK~nv~mldI~Str~l~q~GFLAkvFti~ek~~isVDvvaT--SEV~iSltL~~~~~~sreliq~~l~~a~e 458 (559)
T KOG0456|consen 385 TSIVLKRNVTMLDIASTRMLGQHGFLAKVFTIFEKLGISVDVVAT--SEVSISLTLDPSKLDSRELIQGELDQAVE 458 (559)
T ss_pred eEEEEeccEEEEEecccchhhhhhHHHHHHHHHHHhCcEEEEEEe--eeEEEEEecChhhhhhHHHHHhhHHHHHH
Confidence 45777889999999997 888899999999999999999999998 899999999887665 334 66666654
|
|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.52 Score=37.16 Aligned_cols=53 Identities=17% Similarity=0.219 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
+.+.||.++++.+.|+++|+||.-+.....+....+.+..++.+++.+.|-+.
T Consensus 8 v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~~~~~rl~~~~~~~~~~~L~~~ 60 (66)
T cd04908 8 LENKPGRLAAVTEILSEAGINIRALSIADTSEFGILRLIVSDPDKAKEALKEA 60 (66)
T ss_pred EcCCCChHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEECCHHHHHHHHHHC
Confidence 56789999999999999999997544333322466666778878888888654
|
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains. |
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Probab=90.83 E-value=0.74 Score=37.95 Aligned_cols=52 Identities=19% Similarity=0.270 Sum_probs=38.7
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
.+.||+++|+...|.+.|+||+.++.++ ..+++++..++ +.++++.+.|+++
T Consensus 10 ~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~--------~~i~qi~kQL~KL 67 (76)
T PRK06737 10 HNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTE--------NEATLLVSQLKKL 67 (76)
T ss_pred ecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCH--------HHHHHHHHHHhCC
Confidence 3689999999999999999999997442 34667765443 2456677777764
|
|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=90.41 E-value=0.83 Score=38.35 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=39.1
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeC-CchhhhHHHHHHHHHHHHHHHhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLD-PSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~-~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
.+.||+++|+-..|.+.|+||+.++.++ .+++++++ .++ ..++++.+.|+++
T Consensus 10 eN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~--------~~ieqI~kQL~Kl 68 (84)
T PRK13562 10 ADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDD--------TSLHILIKKLKQQ 68 (84)
T ss_pred ECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCH--------HHHHHHHHHHhCC
Confidence 3689999999999999999999997543 35778886 443 2356666677763
|
|
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Probab=90.02 E-value=1 Score=32.09 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=38.1
Q ss_pred ccchHHHHHHHHHHhCCCcEEEEEecCC----ceEEEEEEecc-cHHHHHHHHH
Q 008693 485 RSSLILEKAFRVLRRSGVNVQMISQGAS----KVNISLIVNDD-EAEQCVRALH 533 (557)
Q Consensus 485 ~~~~v~~rif~~L~~~gInI~~IsqgsS----e~sIs~vV~~~-d~~kAv~~LH 533 (557)
+.++.+.++++.|++.++++..+.+... ...+++.++.. +.+++++.|+
T Consensus 7 ~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 60 (60)
T cd02116 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEALE 60 (60)
T ss_pred CCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHhC
Confidence 3578999999999999999999877543 36688888887 6666666553
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p |
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.63 E-value=1.3 Score=36.44 Aligned_cols=51 Identities=18% Similarity=0.313 Sum_probs=38.7
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
.+.||.++|+...|++.|+||+.++.++ ..+++++..+ +.++.+.+.|+++
T Consensus 11 ~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~---------~~i~ql~kQL~KL 67 (76)
T PRK11152 11 RFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASE---------RPIDLLSSQLNKL 67 (76)
T ss_pred ECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCC---------chHHHHHHHHhcC
Confidence 3689999999999999999999997432 4678888632 2456666777764
|
|
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.21 E-value=2.2 Score=36.23 Aligned_cols=47 Identities=13% Similarity=0.295 Sum_probs=36.8
Q ss_pred cEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc----CceeEEEeCCc
Q 008693 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----EVSLSLTLDPS 443 (557)
Q Consensus 394 nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS----e~sIS~~I~~~ 443 (557)
..++||+.|. ++||+.+.++..|+++|+||.-++++ -.+.-+.++-+
T Consensus 2 ~~avITV~Gk---Dr~GIva~is~vLAe~~vNIldisQtvm~~~ftm~~lV~~~ 52 (90)
T COG3830 2 MRAVITVIGK---DRVGIVAAVSRVLAEHGVNILDISQTVMDGFFTMIMLVDIS 52 (90)
T ss_pred ceEEEEEEcC---CCCchhHHHHHHHHHcCCcEEEHHHHHHhhhceeeeEEcCC
Confidence 4578899874 68999999999999999999999865 24455555543
|
|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=88.01 E-value=11 Score=35.57 Aligned_cols=91 Identities=12% Similarity=0.252 Sum_probs=56.6
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEcc--C----ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhe---ee-------
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI---VN------- 469 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstS--e----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~---i~------- 469 (557)
.+.||.++++...|+++|+||+.++.+ + ..+++.++.++ +.++++.+.|+++-. +.
T Consensus 10 eN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~--------~~i~qi~kQl~KLidV~~V~~~~~~~~ 81 (161)
T PRK11895 10 ENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDE--------QVIEQITKQLNKLIDVLKVVDLTEEAH 81 (161)
T ss_pred cCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCH--------HHHHHHHHHHhccccEEEEEecCCcch
Confidence 478999999999999999999987532 2 23667776543 235555566665321 11
Q ss_pred cccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEE
Q 008693 470 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 508 (557)
Q Consensus 470 ~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Is 508 (557)
+...++++-+...-.. -..+++...-.+-+|.-++
T Consensus 82 v~rEl~LiKv~~~~~~----r~~i~~i~~~f~a~ivdv~ 116 (161)
T PRK11895 82 VERELALVKVRASGEN----RAEILRLADIFRAKIVDVT 116 (161)
T ss_pred hheEEEEEEEECCccc----HHHHHHHHHHhCCEEEEec
Confidence 2234677777664322 2355555555566766553
|
|
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
Probab=87.67 E-value=1.9 Score=32.52 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=35.2
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc-eEEEEEEecccHHHHHHHH
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASK-VNISLIVNDDEAEQCVRAL 532 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsSe-~sIs~vV~~~d~~kAv~~L 532 (557)
+.+.||.++++.+.|.++|+||..+.....+ ..-.+.+.-++.++|.+.|
T Consensus 5 ~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 5 VENKPGRLAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred eCCCCChHHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 4567999999999999999999654433322 2334445555588887765
|
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A |
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=87.54 E-value=2.3 Score=34.66 Aligned_cols=58 Identities=19% Similarity=0.344 Sum_probs=38.3
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecccHHHHHHHHHHHh
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqgs--Se~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
.+|+++| .+.||+.+.++++|++.|.||.-+.|.. ..-++.+.|+-. +.....|.++|
T Consensus 3 ~vItv~G--~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~--~~~~~~l~~~L 62 (76)
T PF13740_consen 3 LVITVVG--PDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIP--EDSLERLESAL 62 (76)
T ss_dssp EEEEEEE--E--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEES--HHHHHHHHHHH
T ss_pred EEEEEEe--cCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeC--cccHHHHHHHH
Confidence 4688888 4679999999999999999998766654 444555555555 33444555444
|
|
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Probab=87.06 E-value=14 Score=34.78 Aligned_cols=91 Identities=13% Similarity=0.251 Sum_probs=55.6
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEcc--C----ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhe---ee-------
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATS--E----VSLSLTLDPSKLWSRELIQQELDHVVEELEKIAI---VN------- 469 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstS--e----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~---i~------- 469 (557)
.+.||.++++...|++.|+||+.+..+ + ..+++.++.++ +.++++.+.|+++-. +.
T Consensus 9 en~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~--------~~i~qi~kQl~Kli~V~~V~~~~~~~~ 80 (157)
T TIGR00119 9 ENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDD--------KVLEQITKQLNKLVDVIKVSDLTESAI 80 (157)
T ss_pred cCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCH--------HHHHHHHHHHhcCccEEEEEecCCCcc
Confidence 468999999999999999999987532 2 23677776532 234555556665321 11
Q ss_pred cccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEE
Q 008693 470 LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 508 (557)
Q Consensus 470 ~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Is 508 (557)
+...++++-+...... -..+++...-.+-+|.-++
T Consensus 81 v~rEl~LiKv~~~~~~----r~~i~~i~~~f~a~ivdv~ 115 (157)
T TIGR00119 81 VERELCLVKVSAPGEG----RDEIIRLTNIFRGRIVDVS 115 (157)
T ss_pred eeeEEEEEEEECCccC----HHHHHHHHHHhCCEEEEec
Confidence 2234577777664222 2355555555556665553
|
acetohydroxyacid synthase is a synonym. |
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=86.26 E-value=2 Score=36.99 Aligned_cols=51 Identities=18% Similarity=0.344 Sum_probs=37.9
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
.+.||+++++...|++.|+||+.++.++ ..+++++.. + +.++++.+.|+++
T Consensus 16 ~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~-~--------~~i~Qi~kQL~KL 72 (96)
T PRK08178 16 RNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVND-D--------QRLEQMISQIEKL 72 (96)
T ss_pred ECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcC-c--------hHHHHHHHHHhCC
Confidence 3689999999999999999999996432 456777763 2 2356667777764
|
|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=4.1 Score=34.22 Aligned_cols=52 Identities=15% Similarity=0.257 Sum_probs=40.3
Q ss_pred cccchHHHHHHHHHHhCCCcEEEEEecCCce----EEEEEEe-cccH--HHHHHHHHHH
Q 008693 484 QRSSLILEKAFRVLRRSGVNVQMISQGASKV----NISLIVN-DDEA--EQCVRALHET 535 (557)
Q Consensus 484 ~~~~~v~~rif~~L~~~gInI~~IsqgsSe~----sIs~vV~-~~d~--~kAv~~LH~~ 535 (557)
.+.||++.|+...+.+.|+||..++.|.++. .++++++ .++. ++..+.|++-
T Consensus 10 eN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 10 ADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQ 68 (84)
T ss_pred ECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCC
Confidence 4679999999999999999999999998765 6888887 4432 3555555543
|
|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
Probab=85.85 E-value=2.9 Score=33.82 Aligned_cols=31 Identities=10% Similarity=0.239 Sum_probs=26.2
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCceEEEEEc
Q 008693 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (557)
Q Consensus 398 ItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist 431 (557)
+++.|. ++||+.+++.+.|+++|+||.-+++
T Consensus 2 vtv~G~---DrpGiv~~vt~~la~~~~nI~dl~~ 32 (75)
T cd04870 2 ITVTGP---DRPGLTSALTEVLAAHGVRILDVGQ 32 (75)
T ss_pred EEEEcC---CCCCHHHHHHHHHHHCCCCEEeccc
Confidence 566663 6899999999999999999988753
|
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.17 E-value=4.9 Score=37.31 Aligned_cols=55 Identities=22% Similarity=0.347 Sum_probs=42.9
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCC---ceEEEEEEecccHHHHHHHHHHHhc
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGAS---KVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsS---e~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
+.+.+|+++++++.+++.|+||..|+|... ..++++-++..+.+..++.|=+.+-
T Consensus 76 l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~~~g~a~vs~tVevs~~~~~L~~Li~~L~ 133 (147)
T PRK04435 76 LEDRSGTLSKVLNVIAEAGGNILTINQSIPLQGRANVTISIDTSSMEGDIDELLEKLR 133 (147)
T ss_pred EecCCCHHHHHHHHHHHcCCCeEEEEEEcCCCCEEEEEEEEEeCChHHHHHHHHHHHH
Confidence 445689999999999999999999998542 2458888888888766666665554
|
|
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
Probab=83.85 E-value=2.1 Score=33.75 Aligned_cols=51 Identities=20% Similarity=0.501 Sum_probs=35.9
Q ss_pred chhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh
Q 008693 407 GQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 407 ~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
+.||.+.|+...|.+.|++++.++.+. ..++++++.++ +.++.+.+.|+++
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~--------~~i~~l~~Ql~Kl 57 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDD--------REIEQLVKQLEKL 57 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-C--------CHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCc--------hhHHHHHHHHhcc
Confidence 368999999999999999999986332 45677776633 1355566667764
|
|
| >COG4492 PheB ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.79 E-value=8.7 Score=34.97 Aligned_cols=65 Identities=20% Similarity=0.470 Sum_probs=48.3
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEcc-----CceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEE
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLI 480 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstS-----e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIV 480 (557)
..+.|.++++++.+++.++||.-|.|+ -.++++.++.+.. +..++.++.++.+ .++++.|-++
T Consensus 80 edr~G~LS~vLd~iA~~~~nvLTI~Q~ipl~g~Anvtlsi~~ssm------~~~V~~ii~kl~k------~e~V~kVeiv 147 (150)
T COG4492 80 EDRVGILSDVLDVIAREEINVLTIHQTIPLQGRANVTLSIDTSSM------EKDVDKIIEKLRK------VEGVEKVEIV 147 (150)
T ss_pred hhhhhhHHHHHHHHHHhCCcEEEEecccccCceeeEEEEEEchhh------hhhHHHHHHHHhc------ccceeEEEEe
Confidence 468999999999999999999999765 3567777776532 2356777777776 3456677777
Q ss_pred cc
Q 008693 481 GN 482 (557)
Q Consensus 481 G~ 482 (557)
|.
T Consensus 148 gs 149 (150)
T COG4492 148 GS 149 (150)
T ss_pred ec
Confidence 73
|
|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=82.46 E-value=6.4 Score=37.71 Aligned_cols=57 Identities=23% Similarity=0.407 Sum_probs=41.9
Q ss_pred EEEEccccccchHHHHHHHHHHhCCCcEEEEEecC----CceEEEEEEeccc--HHHHHHHHHHH
Q 008693 477 ISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA----SKVNISLIVNDDE--AEQCVRALHET 535 (557)
Q Consensus 477 IsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqgs----Se~sIs~vV~~~d--~~kAv~~LH~~ 535 (557)
+++++ .+.||++.|+...|++.|+||..++.+. ....++++++.++ .++..+.|++-
T Consensus 5 isvlv--~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KL 67 (174)
T CHL00100 5 LSVLV--EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKL 67 (174)
T ss_pred EEEEE--eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHH
Confidence 45555 4689999999999999999999988765 4446889999863 34444444443
|
|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=82.37 E-value=20 Score=34.30 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=56.2
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEcc------CceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhhee----eccccee
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIV----NLLQHRS 475 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstS------e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i----~~~~~~a 475 (557)
.++||+++++...|++.|+||+.++++ ...++++++.++-. -+.+...|+++.+.++- ..+ .+...++
T Consensus 10 ~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~-ieqL~kQL~KLidVl~V-~~~~~~~~v~rEl~ 87 (174)
T CHL00100 10 EDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRT-IEQLTKQLYKLVNILKV-QDITNIPCVERELM 87 (174)
T ss_pred eCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHH-HHHHHHHHHHHhHhhEE-EecCCccceeeEEE
Confidence 368999999999999999999998743 24577888765321 22333344444443321 111 1234567
Q ss_pred EEEEEccccccchHHHHHHHHHHhCCCcEEEEE
Q 008693 476 IISLIGNVQRSSLILEKAFRVLRRSGVNVQMIS 508 (557)
Q Consensus 476 iIsIVG~~~~~~~v~~rif~~L~~~gInI~~Is 508 (557)
++-+.....+. ..+++...-.+-+|.-++
T Consensus 88 LiKv~~~~~~r----~ei~~~~~~f~a~ivdv~ 116 (174)
T CHL00100 88 LIKINVNSQTR----PEILEIAQIFRAKVVDLS 116 (174)
T ss_pred EEEEecCCcCH----HHHHHHHHHhCCEEEEec
Confidence 77776643222 234444444455665554
|
|
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
Probab=81.61 E-value=4.3 Score=31.07 Aligned_cols=53 Identities=21% Similarity=0.332 Sum_probs=36.3
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCc--eEEEEEEecccHHHHHHHHHHH
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASK--VNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsSe--~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
+.+.||.++++.+.|+++|+||..+.+.... ....+.+.-++.+++.+.|.+.
T Consensus 6 ~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~~~~~~~~L~~~ 60 (65)
T cd04882 6 VPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTEDIEKAIEVLQER 60 (65)
T ss_pred eCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCCHHHHHHHHHHC
Confidence 4578999999999999999999866543222 2233445545577777766543
|
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=80.84 E-value=44 Score=34.54 Aligned_cols=84 Identities=7% Similarity=0.113 Sum_probs=50.8
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc------CceeEEEeC-CchhhhHHHHHHHHHHHHHHHhhhhe
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS------EVSLSLTLD-PSKLWSRELIQQELDHVVEELEKIAI 467 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS------e~sIS~~I~-~~~~~~~~~~~~~l~~~~~~l~~~~~ 467 (557)
-..+++.+. ++||+.+++.+.|++.|+||.-+++. .....+.++ +.. .....++++|..+-+++.-...
T Consensus 7 ~~vitv~G~---DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~-~~~~~L~~~L~~l~~~l~l~i~ 82 (286)
T PRK13011 7 TFVLTLSCP---SAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEG-LDEDALRAGFAPIAARFGMQWE 82 (286)
T ss_pred eEEEEEEeC---CCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCC-CCHHHHHHHHHHHHHHhCcEEE
Confidence 345788764 68999999999999999999988763 122333332 111 1234456667666666553233
Q ss_pred eecccceeEEEEEcc
Q 008693 468 VNLLQHRSIISLIGN 482 (557)
Q Consensus 468 i~~~~~~aiIsIVG~ 482 (557)
+......-.|.+.|.
T Consensus 83 i~~~~~~~ri~vl~S 97 (286)
T PRK13011 83 LHDPAARPKVLIMVS 97 (286)
T ss_pred EeecccCceEEEEEc
Confidence 333333335666654
|
|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=80.48 E-value=12 Score=30.29 Aligned_cols=44 Identities=14% Similarity=0.289 Sum_probs=30.4
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc----cCceeEEEeCC
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDP 442 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist----Se~sIS~~I~~ 442 (557)
.+|++.|. ++||++++++..|+++|.|+.-+.+ ...+..+.++-
T Consensus 3 ~vItv~G~---DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~ 50 (76)
T PF13740_consen 3 LVITVVGP---DRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSI 50 (76)
T ss_dssp EEEEEEEE-----TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEE
T ss_pred EEEEEEec---CCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEe
Confidence 46788874 6899999999999999999987753 23444555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 557 | ||||
| 2cdq_A | 510 | Crystal Structure Of Arabidopsis Thaliana Aspartate | 0.0 | ||
| 3c1n_C | 473 | Crystal Structure Of Allosteric Inhibition Threonin | 1e-75 | ||
| 2hmf_A | 469 | Structure Of A Threonine Sensitive Aspartokinase Fr | 2e-75 | ||
| 2j0x_A | 449 | Crystal Structure Of E. Coli Aspartokinase Iii In C | 9e-53 | ||
| 3tvi_A | 446 | Crystal Structure Of Clostridium Acetobutylicum Asp | 8e-44 | ||
| 3ab4_A | 421 | Crystal Structure Of Feedback Inhibition Resistant | 2e-37 | ||
| 3aaw_A | 421 | Crystal Structure Of Aspartate Kinase From Coryneba | 2e-37 | ||
| 3l76_A | 600 | Crystal Structure Of Aspartate Kinase From Synechoc | 2e-24 | ||
| 3mah_A | 157 | A Putative C-Terminal Regulatory Domain Of Aspartat | 7e-11 | ||
| 4go5_X | 200 | The Regulatory Subunit Of Aspartate Kinase From Myc | 1e-06 | ||
| 3s1t_A | 181 | Structure Of The Regulatory Domain Of Aspartokinase | 6e-05 | ||
| 2dt9_A | 167 | Crystal Structure Of The Regulatory Subunit Of Aspa | 1e-04 | ||
| 3ab4_B | 178 | Crystal Structure Of Feedback Inhibition Resistant | 4e-04 | ||
| 2dtj_A | 178 | Crystal Structure Of Regulatory Subunit Of Aspartat | 6e-04 | ||
| 2re1_A | 167 | Crystal Structure Of Aspartokinase Alpha And Beta S | 8e-04 |
| >pdb|2CDQ|A Chain A, Crystal Structure Of Arabidopsis Thaliana Aspartate Kinase Complexed With Lysine And S-Adenosylmethionine Length = 510 | Back alignment and structure |
|
| >pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition Threonine-Sensitive Aspartokinase From Methanococcus Jannaschii With L-Threonine Length = 473 | Back alignment and structure |
|
| >pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From Methanococcus Jannaschii Complexed With Mg-Adp And Aspartate Length = 469 | Back alignment and structure |
|
| >pdb|2J0X|A Chain A, Crystal Structure Of E. Coli Aspartokinase Iii In Complex With Lysine And Aspartate (T-State) Length = 449 | Back alignment and structure |
|
| >pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate Kinase (Caak): An Important Allosteric Enzyme For Industrial Amino Acids Production Length = 446 | Back alignment and structure |
|
| >pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421 | Back alignment and structure |
|
| >pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 421 | Back alignment and structure |
|
| >pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis Length = 600 | Back alignment and structure |
|
| >pdb|3MAH|A Chain A, A Putative C-Terminal Regulatory Domain Of Aspartate Kinase From Porphyromonas Gingivalis W83 Length = 157 | Back alignment and structure |
|
| >pdb|4GO5|X Chain X, The Regulatory Subunit Of Aspartate Kinase From Mycobacterium Tuberculosis Length = 200 | Back alignment and structure |
|
| >pdb|3S1T|A Chain A, Structure Of The Regulatory Domain Of Aspartokinase (Rv3709c; Ak-Beta) In Complex With Threonine From Mycobacterium Tuberculosis Length = 181 | Back alignment and structure |
|
| >pdb|2DT9|A Chain A, Crystal Structure Of The Regulatory Subunit Of Aspartate Kinase From Thermus Flavus Length = 167 | Back alignment and structure |
|
| >pdb|3AB4|B Chain B, Crystal Structure Of Feedback Inhibition Resistant Mutant Of Aspartate Kinase From Corynebacterium Glutamicum In Complex With Lysine And Threonine Length = 178 | Back alignment and structure |
|
| >pdb|2DTJ|A Chain A, Crystal Structure Of Regulatory Subunit Of Aspartate Kinase From Corynebacterium Glutamicum Length = 178 | Back alignment and structure |
|
| >pdb|2RE1|A Chain A, Crystal Structure Of Aspartokinase Alpha And Beta Subunits Length = 167 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510 | Back alignment and structure |
|---|
Score = 595 bits (1536), Expect = 0.0
Identities = 390/487 (80%), Positives = 434/487 (89%), Gaps = 1/487 (0%)
Query: 54 VSCEGARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERP 113
+ V+E KK+E + + EK +TCVMKFGGSS+ASAERM+EVA+LIL+FP E P
Sbjct: 1 MGSRNIVRAVLEEKKTEAI-TEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESP 59
Query: 114 VIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVDELGIDRSIIATHL 173
VIVLSAMGKTTN LLLAGEKAVSCGV+N S I+ELS +K+LH RTV EL ID S+I T+L
Sbjct: 60 VIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTVKELNIDPSVILTYL 119
Query: 174 EELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233
EELEQLLKGIAM+KELT R+RDYLVSFGEC+STRIFAAYLN IGVKARQYDAF+IGFITT
Sbjct: 120 EELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITT 179
Query: 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATT 293
DDFTN DILEATYPAVAKRL+ DW+ D A+PIVTGFLGK W+T A+TTLGRGGSDLTATT
Sbjct: 180 DDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATT 239
Query: 294 IGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPA 353
IGKALGL+EIQVWKDVDGVLTCDP I+ A PVPYLTFDEAAELAYFGAQVLHPQSMRPA
Sbjct: 240 IGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPA 299
Query: 354 REGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLA 413
REG+IPVRVKNSYNP APGT+I ++RDM+K++LTSIVLKRNVTMLDI STRMLGQ GFLA
Sbjct: 300 REGEIPVRVKNSYNPKAPGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLA 359
Query: 414 KVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQH 473
KVFS FE+LGISVDVVATSEVS+SLTLDPSKLWSRELIQQELDHVVEELEKIA+VNLL+
Sbjct: 360 KVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKG 419
Query: 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE CV+ALH
Sbjct: 420 RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 479
Query: 534 ETFFESD 540
++FFES
Sbjct: 480 KSFFESG 486
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 Length = 510 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 477 ISLIGNVQRSSL-----ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRA 531
++++ ++ + + L K F + G++V +++ S+V+ISL ++ +
Sbjct: 341 VTML-DIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELI 397
Query: 532 LHETF-FESDLANLDCV 547
E +L + V
Sbjct: 398 QQELDHVVEELEKIAVV 414
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* Length = 449 | Back alignment and structure |
|---|
Score = 507 bits (1309), Expect = e-177
Identities = 157/461 (34%), Positives = 242/461 (52%), Gaps = 23/461 (4%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N ++VLSA TN L+ E
Sbjct: 6 VSKFGGTSVADFDAMNRSADIVLSDAN-VRLVVLSASAGITNLLVALAEGLE-----PGE 59
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKE-----LTPRSRDYLV 198
++L ++++ ++ L I EE+E+LL+ I +L E +P D LV
Sbjct: 60 RFEKLDAIRNIQFAILERLRYPNVI----REEIERLLENITVLAEAAALATSPALTDELV 115
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
S GE MST +F L + V+A+ +D + T D F A+ A +A +
Sbjct: 116 SHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFGRAEPDIAALAELAALQLLPRL 174
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+ + I GF+G + TTLGRGGSD TA + +AL + +W DV G+ T DP
Sbjct: 175 NE-GLVITQGFIG-SENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 232
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
+ AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A GTL+
Sbjct: 233 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 292
Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438
+ ++ L+RN T+L + S ML GFLA+VF ISVD++ TSEVS++L
Sbjct: 293 TENPPLF-RALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVAL 351
Query: 439 TLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIG-NVQRSSLILEKAFRVL 497
TLD + S ++ EL + V + + ++++LIG ++ ++ + ++ F VL
Sbjct: 352 TLDTTGSTSTGD-TLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVL 410
Query: 498 RRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
N++MI GAS N+ +V ++AEQ V+ LH FE
Sbjct: 411 --EPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} Length = 446 | Back alignment and structure |
|---|
Score = 485 bits (1251), Expect = e-169
Identities = 130/470 (27%), Positives = 224/470 (47%), Gaps = 39/470 (8%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG---VT 140
V KFGGSSLA + + ++V +I S N R I+ SA GK TNK + C
Sbjct: 6 VTKFGGSSLADSNQFKKVKGIIDSDAN-RKYIIPSAPGKRTNKDYKITDLLYLCNAHVKN 64
Query: 141 NISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF 200
I D + + V EL ID I LE++ K I S DY S
Sbjct: 65 GIPFDDVFKLISQRYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASR 115
Query: 201 GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITD 260
GE ++ I A YLN + A + I D + + +Y + +++
Sbjct: 116 GEYLNGVILAKYLNAEFIDAAE-------VIFFDK-SGCFDEKKSYEKIKEKVLSC---- 163
Query: 261 LAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIH 320
++ GF G + + T RGGSD+T + I + + W DV G L DP I
Sbjct: 164 -NKAVIPGFYG-SSFNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIV 221
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR--RS 378
+ K + +++ E EL+Y GA VLH +++ P ++ IP+ +KN+ P+ PGTLI
Sbjct: 222 ENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTH 281
Query: 379 RDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSL 438
++++ +T I K+N T++ I + + GF K+ S E G+S + + + S+SL
Sbjct: 282 KEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSL 341
Query: 439 TLDPSKLWSRELIQQELDHVVEELEK---IAIVNLLQHRSIISLIG-NVQRSSLILEKAF 494
++ KL + D ++EE++K + + + ++++ +G + ++ I K F
Sbjct: 342 VIEDCKL------DGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKGIANKIF 395
Query: 495 RVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLANL 544
L + VN++MI QG+S++N+ + V + E+ V++++ F E +
Sbjct: 396 TALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIYNAFNEGHHHHH 445
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A Length = 421 | Back alignment and structure |
|---|
Score = 255 bits (653), Expect = 2e-79
Identities = 137/472 (29%), Positives = 220/472 (46%), Gaps = 90/472 (19%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V K+GGSSL SAER+R VAE I++ V+V SAMG TT
Sbjct: 5 VQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTT----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
DEL + + + P R D L
Sbjct: 48 ------------------DEL--------------------LELAAAVNPVPPAREMDML 69
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDW 257
++ GE +S + A + +G +A+ + G +TT+ NA I++ T V + L
Sbjct: 70 LTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARIVDVTPGRVREALDEG- 128
Query: 258 ITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDP 317
I IV GF G T +TTLGRGGSD TA + AL +++ DVDGV T DP
Sbjct: 129 ----KICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADP 184
Query: 318 NIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377
I P+A+ + L+F+E ELA G+++L +S+ AR ++P+RV++SY+ N PGTLI
Sbjct: 185 RIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYS-NDPGTLIAG 243
Query: 378 SR---DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV----- 429
S + +AVLT + ++ + ++ + + G AKVF D I++D+V
Sbjct: 244 SMEDIPVEEAVLTGVATDKSEAKVTVL--GISDKPGEAAKVFRALADAEINIDMVLQNVF 301
Query: 430 --ATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI--ISLIGNVQR 485
++ T R ++ ++ + + + N+L + +SL+G +
Sbjct: 302 SVEDGTTDITFTC------PRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMK 355
Query: 486 S-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
S + + LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 356 SHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 405
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 | Back alignment and structure |
|---|
Score = 243 bits (622), Expect = 4e-73
Identities = 116/494 (23%), Positives = 205/494 (41%), Gaps = 91/494 (18%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGVTN 141
V KFGG+S+ + ER++ VA+ I V+V+SAMGK+T
Sbjct: 5 VQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKST----------------- 47
Query: 142 ISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTP----RSRDYL 197
D L + + ++++P R D L
Sbjct: 48 ------------------DVL--------------------VDLAQQISPNPCRREMDML 69
Query: 198 VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRL-HGD 256
+S GE +S + + L +I A +G +T + + A ILE + L G
Sbjct: 70 LSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGK 129
Query: 257 WITDLAIPIVTGFLG-KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315
+ +V GF G + ITTLGRGGSD +A + AL +++ DV G+LT
Sbjct: 130 ------VVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183
Query: 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLI 375
DP + P A+ + +T DE ELA GA+VLHP+++ AR IP+ V++S++ + PGT +
Sbjct: 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWS-DEPGTKV 242
Query: 376 RRSRD--------MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVD 427
+ + + + ++ R+ + G +K+F + +D
Sbjct: 243 VAPPVQNRSLVGLEIAKAVDGVEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDID 300
Query: 428 VV-----ATSEVSLSLTLDPSKLW-SRELIQQELDHVVEELEKIAIVNLLQHRSI--ISL 479
++ + ++ T+ L + + + E ++ + I I++
Sbjct: 301 LIIQSIHDGNSNDIAFTVVKDLLNTAEAVTSAIAPALRSYPEADQEAEIIVEKGIAKIAI 360
Query: 480 IGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538
G I K F+ L GVN++MIS S+V +S +++ +A++ + AL F
Sbjct: 361 AGAGMIGRPGIAAKMFKTLADVGVNIEMIST--SEVKVSCVIDQRDADRAIAALSNAFGV 418
Query: 539 SDLANLDCVCGSEN 552
+ + S
Sbjct: 419 TLSPPKNQTDTSHL 432
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} Length = 600 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 3e-12
Identities = 30/192 (15%), Positives = 76/192 (39%), Gaps = 11/192 (5%)
Query: 352 PAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGF 411
R+ D + ++ ++ + + L ++ + I + + G
Sbjct: 401 DQRDADRAIAALSNAFGVTLSPPKNQTDTSHLPAVRGVALDQDQAQIAIR--HVPDRPGM 458
Query: 412 LAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEK----IAI 467
A++F+ + ISVD++ S+ P + + + + + L+
Sbjct: 459 AAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQAEAILQPLIKDWLD 518
Query: 468 VNLLQHRSI--ISLIGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE 524
++ +++I +S++G+ + F L + +N++MI+ S++ IS +V D
Sbjct: 519 AAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIA--TSEIKISCVVPQDR 576
Query: 525 AEQCVRALHETF 536
++A H F
Sbjct: 577 GVDALKAAHSAF 588
|
| >3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} Length = 157 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 4e-51
Identities = 48/164 (29%), Positives = 83/164 (50%), Gaps = 12/164 (7%)
Query: 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLS 437
S D K + ++ K +T++ + S+ L + F+ K+F FE VD+VATSEV +S
Sbjct: 1 SLDTEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVS 60
Query: 438 LTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSL-ILEKAFRV 496
LT+D + L +V L I V + + II ++G+++ ++ +
Sbjct: 61 LTIDND---------KNLPDIVRALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINA 111
Query: 497 LRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540
L GV V+MIS G S N+S++V ++ ++ + AL F S
Sbjct: 112 L--KGVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNSR 153
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 9e-15
Identities = 75/447 (16%), Positives = 145/447 (32%), Gaps = 128/447 (28%)
Query: 97 RMREVAELILSFPNERPV--IVLSAM---GKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151
R++ +L + RP +++ + GKT +A + +S V +
Sbjct: 133 RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKV-------QCKMD 181
Query: 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIA-MLKELTPRSRDYLVSFGECMSTRIFA 210
+ + ++ LE L++LL I + S + +
Sbjct: 182 FKIFWLNLKNCNSPETV----LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHS------IQ 231
Query: 211 AYLNKIGVKARQY-DAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGF 269
A L ++ +K++ Y + + + NA A F
Sbjct: 232 AELRRL-LKSKPYENCLLV----LLNVQNAKAWNA------------------------F 262
Query: 270 LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329
C L TT + QV + T ++ H+ L
Sbjct: 263 NLS----C--KIL--------LTT-------RFKQVTDFLSAATTTHISLDHHSMT---L 298
Query: 330 TFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP---GTLIR-------RSR 379
T DE L + L RP D+P V + NP IR +
Sbjct: 299 TPDEVKSL--L-LKYLD---CRP---QDLPREVLTT-NPRRLSIIAESIRDGLATWDNWK 348
Query: 380 DMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGI---SVDVVATSEVSL 436
++ LT+I ++ ++ +L+ R + F+ L + S + + + L
Sbjct: 349 HVNCDKLTTI-IESSLNVLEPAEYRKM------------FDRLSVFPPSAHI--PTIL-L 392
Query: 437 SLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRV 496
SL +W ++I+ ++ VV +L K ++V S IS+ + + +
Sbjct: 393 SL------IWF-DVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS-IYLELKVKLENEYA 444
Query: 497 LRRSGVNVQMISQGASKVNISLIVNDD 523
L RS V+ I + ++ D
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQ 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 4e-08
Identities = 59/354 (16%), Positives = 110/354 (31%), Gaps = 72/354 (20%)
Query: 226 FDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRG 285
F+ G + DIL A + D+ I++ I +
Sbjct: 9 FETGEH---QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILS--------KEEIDHIIMS 57
Query: 286 GSDLTAT--TIGKALGLQEIQVWKDVDGVLTCDPN-------IH--PHAKPVPYLTFDEA 334
++ T L QE V K V+ VL N I + + E
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVL--RINYKFLMSPIKTEQRQPSMMTRMYIEQ 115
Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKN---SYNPNAPGTLIRRSRDMS---KAVLTS 388
+ Y QV ++ R ++++ P LI + K +
Sbjct: 116 RDRLYNDNQVFAKYNVS--RLQPY-LKLRQALLELRPA-KNVLI---DGVLGSGKTWVAL 168
Query: 389 IVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLG--ISVDVVATSEVSLSLTLDPSKLW 446
V S ++ + F K+F + +L S + V L +DP+
Sbjct: 169 DVCL---------SYKVQCKMDF--KIF--WLNLKNCNSPETVLEMLQKLLYQIDPN-WT 214
Query: 447 SRELIQQELDHVVEELEKIAIVNLLQHRS-IISLI--GNVQRSSLILEKAF----RVL-- 497
SR + + + + + LL+ + L+ NVQ + AF ++L
Sbjct: 215 SRSDHSSNIKLRIHSI-QAELRRLLKSKPYENCLLVLLNVQNAKAW--NAFNLSCKILLT 271
Query: 498 -RRSGVNVQMISQGASKV---NISLIVNDDEAEQ-CVRALHETFFESDLANLDC 546
R V + + + + + S+ + DE + ++ L DL
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP--QDLPREVL 323
|
| >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Length = 167 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 1e-11
Identities = 37/182 (20%), Positives = 71/182 (39%), Gaps = 36/182 (19%)
Query: 372 GTLIRRSRDMSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDV 428
+M +A +T I +N + + + + G ++ D I VD+
Sbjct: 2 NATFEEDDNMERAAVTGIAFDKNQARINVRGVPD-----KPGVAYQILGAVADANIEVDM 56
Query: 429 V-----ATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI------- 476
+ + S T+ + + +E L + + + SI
Sbjct: 57 IIQNVGSEGTTDFSFTVP----------RGDYKQTLEILSERQ--DSIGAASIDGDDTVC 104
Query: 477 -ISLIGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534
+S +G RS + K FR L G+N+QMIS S++ +S+++++ E R LH+
Sbjct: 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS--TSEIKVSVLIDEKYMELATRVLHK 162
Query: 535 TF 536
F
Sbjct: 163 AF 164
|
| >3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} Length = 181 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 9e-11
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 38/175 (21%)
Query: 381 MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV-------A 430
+LT + R+ VT++ + G+ AKVF D +++D+V
Sbjct: 2 SEDPILTGVAHDRSEAKVTIVGLPD-----IPGYAAKVFRAVADADVNIDMVLQNVSKVE 56
Query: 431 TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI--------ISLIGN 482
+ ++ T + VE+L+ + N + + +SLIG
Sbjct: 57 DGKTDITFTCS----------RDVGPAAVEKLDSLR--NEIGFSQLLYDDHIGKVSLIGA 104
Query: 483 VQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
RS + L GVN+++IS S++ IS++ D E ++ V ALHE F
Sbjct: 105 GMRSHPGVTATFCEALAAVGVNIELIS--TSEIRISVLCRDTELDKAVVALHEAF 157
|
| >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* Length = 178 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 2e-10
Identities = 42/175 (24%), Positives = 76/175 (43%), Gaps = 38/175 (21%)
Query: 381 MSKAVLTSIVLKRN---VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV-------A 430
M +AVLT + ++ VT+L I + G AKVF D I++D+V
Sbjct: 1 MEEAVLTGVATDKSEAKVTVLGISD-----KPGEAAKVFRALADAEINIDMVLQNVSSVE 55
Query: 431 TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSI--------ISLIGN 482
++ T + + +E L+K+ ++ +SL+G
Sbjct: 56 DGTTDITFTCP----------RSDGRRAMEILKKLQ--VQGNWTNVLYDDQVGKVSLVGA 103
Query: 483 VQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536
+S + + LR VN+++IS S++ IS+++ +D+ + RALHE F
Sbjct: 104 GMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHEQF 156
|
| >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A Length = 167 | Back alignment and structure |
|---|
Score = 57.1 bits (139), Expect = 8e-10
Identities = 35/140 (25%), Positives = 63/140 (45%), Gaps = 25/140 (17%)
Query: 410 GFLAKVFSTFEDLGISVDVV-------ATSEVSLSLTLDPSKLWSRELIQQELDHVVEEL 462
G AKVF + GI+VD++ S ++ T+ + +E L
Sbjct: 29 GIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVK----------KDFAQEALEAL 78
Query: 463 EKIAIV---NLLQHRSI--ISLIGNVQRS-SLILEKAFRVLRRSGVNVQMISQGASKVNI 516
E + + I +S++G S + K F+ + +G N++MI+ S+V I
Sbjct: 79 EPVLAEIGGEAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA--TSEVRI 136
Query: 517 SLIVNDDEAEQCVRALHETF 536
S+I+ + AE +RA+H+ F
Sbjct: 137 SVIIPAEYAEAALRAVHQAF 156
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* Length = 226 | Back alignment and structure |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 16/105 (15%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+ A + +A + + V +VDGV DP I+ K +P+LT + ++ V
Sbjct: 119 TAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQA 178
Query: 347 -------PQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
P +++ I V V N N ++I
Sbjct: 179 GTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSII 223
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* Length = 240 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 8e-08
Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D AT +G I VDG+ DPN AK + L++++A +V+
Sbjct: 144 TDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMD 200
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
++ A++ +P+ V N G L++
Sbjct: 201 DTAISLAKDNKLPIVV---CNMFKKGNLLQ 227
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 Length = 219 | Back alignment and structure |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 14/103 (13%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL------AYF 340
+D TA + + + +VDGV + DP A L+ + E+
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175
Query: 341 GAQVLHPQSMRPAREGDIPVRVKNSYNPN--------APGTLI 375
V+ + + I V N A GT+I
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVI 218
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 276 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 24/129 (18%), Positives = 42/129 (32%), Gaps = 11/129 (8%)
Query: 263 IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI--H 320
+ + F + + +D A + A G + + ++VDG+ T DPN
Sbjct: 146 AVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDR 205
Query: 321 PHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------P 371
A+ +P + + A+ + V+V N P
Sbjct: 206 GQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHV 265
Query: 372 GTLIRRSRD 380
GTLIR
Sbjct: 266 GTLIRTGVR 274
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} Length = 270 | Back alignment and structure |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 31/195 (15%), Positives = 56/195 (28%), Gaps = 35/195 (17%)
Query: 195 DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLH 254
L S + + L K G+ ++ + A
Sbjct: 100 AQLGSSVADQNAAMLGQLLAKHGIPVVGGAGLSAVPLSLAE------------VNAVVFS 147
Query: 255 GDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLT 314
G L + + +RT D + + G +++ KD DG+ T
Sbjct: 148 GMPPYKLWMRPAAEGVIPPYRT-----------DAGCFLLAEQFGCKQMIFVKDEDGLYT 196
Query: 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNPNA-- 370
+P A +P ++ DE +L + + + V+V N P
Sbjct: 197 ANPKTSKDATFIPRISVDEMKAKG-LHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLT 255
Query: 371 -------PGTLIRRS 378
GT+I S
Sbjct: 256 RALAGEHVGTIITAS 270
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* Length = 244 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 6e-07
Identities = 20/84 (23%), Positives = 30/84 (35%), Gaps = 15/84 (17%)
Query: 307 KDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPV 360
+VDGV T DP P AK + + +E E+ G + V+ P + + I
Sbjct: 159 TNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKT 218
Query: 361 RVKNSYNPNA---------PGTLI 375
V + GT I
Sbjct: 219 IVIGKEDAKDLFRVIKGDHNGTTI 242
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} Length = 281 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 1e-06
Identities = 43/234 (18%), Positives = 82/234 (35%), Gaps = 47/234 (20%)
Query: 160 DELGIDRSIIATHLEELEQLLK----------------GIAMLKELTPRSR-DYLVSFGE 202
++G+D ++A ++ +++ G + + R+R DY+ G
Sbjct: 65 GQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGT 124
Query: 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLA 262
M++ +L K G+ R A + + E P A R
Sbjct: 125 VMNSLALQDFLEKEGIVTRVQTAITM----------GQVAEPYLPLRAVRHLEK------ 168
Query: 263 IPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPH 322
G+ A L +D TA +G + + K VDGV DP ++P
Sbjct: 169 --------GRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPE 220
Query: 323 AKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
A+ + ++ E + G +V + + +P+ V +N G + R
Sbjct: 221 AELLTAVSHREVLDR---GLRVADATAFSLCMDNGMPILV---FNLLTDGNIAR 268
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} PDB: 3ek5_A Length = 243 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 26/90 (28%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D A +G + VDGV DP H A LT+DE G +V+
Sbjct: 145 TDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMD 201
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ AR+ D+P+R+ + + PG L+R
Sbjct: 202 TAAFALARDSDLPLRI---FGMSEPGVLLR 228
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} Length = 256 | Back alignment and structure |
|---|
Score = 44.9 bits (106), Expect = 3e-05
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 7/91 (7%)
Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
+D A I + K+ VDGV DP I+P+A+ ++TF+ A +V+
Sbjct: 159 TDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQ---NLKVM 215
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
++ +E +I + V +N + P ++
Sbjct: 216 DATALALCQENNINLLV---FNIDKPNAIVD 243
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 Length = 252 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 5e-05
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 7/91 (7%)
Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
+D TA + I + K+ VDGV DP +A LT E + G +++
Sbjct: 143 TDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKR---GLKIM 199
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ + + DI + V +N N G + R
Sbjct: 200 DATASTLSMDNDIDLVV---FNMNEAGNIQR 227
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* Length = 247 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D TA G + + VDGV CDP +P AK L++ E + +V+
Sbjct: 144 TDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMD 200
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ AR+ +P+RV +N PG L +
Sbjct: 201 LSAFTLARDHGMPIRV---FNMGKPGALRQ 227
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 Length = 239 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 6e-05
Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 6/90 (6%)
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLH 346
+D A G + + +VDGV T DP P A +TFDEA +V+
Sbjct: 143 TDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLK---NLKVMD 199
Query: 347 PQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
+ RE + + V + G+L R
Sbjct: 200 ATAFALCRERKLNIVV---FGIAKEGSLKR 226
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} Length = 255 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 2e-04
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 287 SDLTATTIGKALGLQEIQVWKD-VDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVL 345
+D + + I V K VDGV T DP + AK L +++ QV+
Sbjct: 149 TDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVM 205
Query: 346 HPQSMRPAREGDIPVRVKNSYNPNAPGTLIR 376
++ AR+ ++P V +N + PG + R
Sbjct: 206 DQAALLLARDYNLPAHV---FNFDEPGVMRR 233
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 100.0 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 100.0 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 100.0 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 100.0 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 100.0 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 100.0 | |
| 2jjx_A | 255 | Uridylate kinase, UMP kinase; structural genomics, | 99.97 | |
| 2j4j_A | 226 | Uridylate kinase; transferase, nucleoside monophos | 99.97 | |
| 1ybd_A | 239 | Uridylate kinase; alpha/beta/alpha fold, hexamer, | 99.97 | |
| 1gs5_A | 258 | Acetylglutamate kinase; carbamate kinase, amino ac | 99.97 | |
| 2a1f_A | 247 | Uridylate kinase; PYRH, structural genomics, PSI, | 99.96 | |
| 4a7w_A | 240 | Uridylate kinase; transferase; HET: GTP; 1.80A {He | 99.96 | |
| 2ap9_A | 299 | NAG kinase, acetylglutamate kinase, AGK; structura | 99.96 | |
| 1z9d_A | 252 | Uridylate kinase, UK, UMP kinase; structural genom | 99.96 | |
| 3ek6_A | 243 | Uridylate kinase; UMPK unique GTP B site, alloster | 99.96 | |
| 3nwy_A | 281 | Uridylate kinase; allosterically activated form, A | 99.95 | |
| 2j5v_A | 367 | Glutamate 5-kinase; proline biosynthesis, gamma gl | 99.95 | |
| 2brx_A | 244 | Uridylate kinase; UMP kinase, amino acid kinase, p | 99.95 | |
| 2ogx_A | 276 | Molybdenum storage protein subunit alpha; open alp | 99.95 | |
| 2ij9_A | 219 | Uridylate kinase; structural genomics, protein str | 99.95 | |
| 2va1_A | 256 | Uridylate kinase; UMPK, transferase, pyrimidine bi | 99.94 | |
| 2rd5_A | 298 | Acetylglutamate kinase-like protein; protein-prote | 99.94 | |
| 2bty_A | 282 | Acetylglutamate kinase; N-acetyl-L-glutamate kinas | 99.94 | |
| 4go7_X | 200 | Aspartokinase; transferase; 2.00A {Mycobacterium t | 99.93 | |
| 3mah_A | 157 | Aspartokinase; aspartate kinase, structural genomi | 99.93 | |
| 2egx_A | 269 | Putative acetylglutamate kinase; struc genomics, N | 99.93 | |
| 2ogx_B | 270 | Molybdenum storage protein subunit beta; open alph | 99.93 | |
| 2ako_A | 251 | Glutamate 5-kinase; structural genomics, PSI, prot | 99.93 | |
| 2v5h_A | 321 | Acetylglutamate kinase; amino-acid biosynthesis, t | 99.93 | |
| 3ll9_A | 269 | Isopentenyl phosphate kinase; mevalonate biosynthe | 99.93 | |
| 3d40_A | 286 | FOMA protein; fosfomycin, antibiotic resistance, k | 99.93 | |
| 2buf_A | 300 | Acetylglutamate kinase; acetyglutamate kinase, ADP | 99.92 | |
| 3l86_A | 279 | Acetylglutamate kinase; ARGB, amino-acid biosynthe | 99.91 | |
| 1e19_A | 314 | Carbamate kinase-like carbamoylphosphate synthetas | 99.91 | |
| 3s1t_A | 181 | Aspartokinase; ACT domain, threonine binding, regu | 99.9 | |
| 2dt9_A | 167 | Aspartokinase; protein-ligand complex, regulatory | 99.9 | |
| 3ll5_A | 249 | Gamma-glutamyl kinase related protein; alternate m | 99.9 | |
| 2re1_A | 167 | Aspartokinase, alpha and beta subunits; structural | 99.87 | |
| 2dtj_A | 178 | Aspartokinase; protein-ligand complex, regulatory | 99.87 | |
| 3d2m_A | 456 | Putative acetylglutamate synthase; protein-COA-Glu | 99.85 | |
| 3zzh_A | 307 | Acetylglutamate kinase; transferase, arginine bios | 99.84 | |
| 2e9y_A | 316 | Carbamate kinase; transferase, structural genomics | 99.83 | |
| 2we5_A | 310 | Carbamate kinase 1; arginine catabolism, arginine | 99.83 | |
| 4ab7_A | 464 | Protein Arg5,6, mitochondrial; transferase, argini | 99.82 | |
| 3k4o_A | 266 | Isopentenyl phosphate kinase; small molecule kinas | 99.81 | |
| 3s6g_A | 460 | N-acetylglutamate kinase / N-acetylglutamate SYNT; | 99.81 | |
| 3l76_A | 600 | Aspartokinase; allostery, ACT domains, kinase tran | 99.81 | |
| 3s6k_A | 467 | Acetylglutamate kinase; synthase, transferase; 2.8 | 99.73 | |
| 4axs_A | 332 | Carbamate kinase; oxidoreductase; 2.50A {Mycoplasm | 99.59 | |
| 3kzf_A | 317 | Carbamate kinase; arginine dihydrolase pathway, gi | 99.57 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 99.12 | |
| 2dtj_A | 178 | Aspartokinase; protein-ligand complex, regulatory | 98.7 | |
| 3c1m_A | 473 | Probable aspartokinase; allosteric inhibition, thr | 98.5 | |
| 4go7_X | 200 | Aspartokinase; transferase; 2.00A {Mycobacterium t | 98.39 | |
| 2dt9_A | 167 | Aspartokinase; protein-ligand complex, regulatory | 98.28 | |
| 2re1_A | 167 | Aspartokinase, alpha and beta subunits; structural | 98.27 | |
| 3s1t_A | 181 | Aspartokinase; ACT domain, threonine binding, regu | 98.15 | |
| 3mah_A | 157 | Aspartokinase; aspartate kinase, structural genomi | 98.09 | |
| 3tvi_A | 446 | Aspartokinase; structural genomics, ACT domains, r | 97.66 | |
| 3ab4_A | 421 | Aspartokinase; aspartate kinase, concerted inhibit | 97.56 | |
| 2cdq_A | 510 | Aspartokinase; aspartate kinase, amino acid metabo | 97.19 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 96.81 | |
| 2j0w_A | 449 | Lysine-sensitive aspartokinase 3; feedback inhibit | 96.67 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 95.37 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 94.51 | |
| 1zhv_A | 134 | Hypothetical protein ATU0741; NESG, ATR8, structur | 94.19 | |
| 1zvp_A | 133 | Hypothetical protein VC0802; structural genomics, | 94.02 | |
| 3p96_A | 415 | Phosphoserine phosphatase SERB; ssgcid, structural | 90.0 |
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-95 Score=795.48 Aligned_cols=495 Identities=80% Similarity=1.144 Sum_probs=430.2
Q ss_pred cceeeeccccccccccccCCCcceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcC
Q 008693 59 ARIDVIERKKSENLGVDESEKQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138 (557)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~ 138 (557)
...+++++++.|+ .+..+.++.|+|+|||||||+|++++++|+++|....+++++||||||||+||.|+++++.+..++
T Consensus 6 ~~~~~~~~~~~~~-~~~~~~~~~~~V~KFGGTSva~~e~i~~va~iI~~~~~~~~vVVVSA~g~~Td~Ll~~~~~~~~~~ 84 (510)
T 2cdq_A 6 IVRAVLEEKKTEA-ITEVDEKGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 84 (510)
T ss_dssp --------------------CCCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcccchhh-hhccCCCCCeEEEEECCcccCCHHHHHHHHHHHHhccCCCEEEEEcCCCCCchHHHHHHHHHhhcc
Confidence 3456777664443 345567889999999999999999999999999775567899999999999999999988765544
Q ss_pred CCcchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCC
Q 008693 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGV 218 (557)
Q Consensus 139 ~~~~~~~~~l~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi 218 (557)
....++...++.++++|.+++++|+.+.+.+++.+++|++++.++...++++++.+|+++|+||++|+.+++++|+++|+
T Consensus 85 ~~~~~~~~~~~~i~~~h~~i~~~l~~~~~~i~~~~~~l~~~l~~~~~~~~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi 164 (510)
T 2cdq_A 85 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGV 164 (510)
T ss_dssp TTTGGGCHHHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchhHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 44445667899999999999999998888899999999999999999999999999999999999999999999999999
Q ss_pred ceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCC-CCceeecCCCcchhHHHHHHHH
Q 008693 219 KARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWR-TCAITTLGRGGSDLTATTIGKA 297 (557)
Q Consensus 219 ~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~-~G~~ttlgRgGSD~tAa~lA~~ 297 (557)
+|++++++|++++|+++|+++++.+.++.++.+++...|++.+.|||++||+|.+ + +|.++|+||||||++|+++|.+
T Consensus 165 ~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf~g~~-~~~g~ittlgrGgsD~tAa~lA~~ 243 (510)
T 2cdq_A 165 KARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKG-WKTGAVTTLGRGGSDLTATTIGKA 243 (510)
T ss_dssp CEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEE-TTTCCEEECCTTHHHHHHHHHHHH
T ss_pred CEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCccccC-CCCCceEEeCCCChHHHHHHHHHH
Confidence 9999999999999999999888876666666777765456788999999999998 6 8999999999999999999999
Q ss_pred cCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEec
Q 008693 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRR 377 (557)
Q Consensus 298 L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~ 377 (557)
|+|++|++|||||||||+|||++|+|++|+++||+|+.+|+++|++||||+|++||+++|||++|+|+++|+.+||+|.+
T Consensus 244 l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a~~~a~~~gIpv~I~n~~~p~~~GT~I~~ 323 (510)
T 2cdq_A 244 LGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITK 323 (510)
T ss_dssp HTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEES
T ss_pred cCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHHHHHHHHCCCeEEEEccCcCCCCCeEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHH
Q 008693 378 SRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDH 457 (557)
Q Consensus 378 ~~~~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~ 457 (557)
...+.+..|++|+.++++++|++.+.+|.+.+||++++|+.|+++||+|+||++|+.+|||+++.++....+..++.++.
T Consensus 324 ~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~~~l~~ 403 (510)
T 2cdq_A 324 TRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDH 403 (510)
T ss_dssp CCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHH
T ss_pred cccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHHHcCCcEEEEEeCCCeEEEEEechHhhhhhHHHHHHHH
Confidence 65444557999999999999999999999999999999999999999999999999999999998764321111235667
Q ss_pred HHHHHhhhheeecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhc
Q 008693 458 VVEELEKIAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 458 ~~~~l~~~~~i~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
++++++.+..+.+.+++|+||+||.|...+|+++|+|++|+++||||+||+||+|+++|||+|+++|.++|+++||++||
T Consensus 404 ~~~el~~~~~v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~~~Av~aLH~~f~ 483 (510)
T 2cdq_A 404 VVEELEKIAVVNLLKGRAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFF 483 (510)
T ss_dssp HHHHHTTTSEEEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCeEEEeCCcEEEEEEEECCCChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHHHHHHHHHHHHHh
Confidence 77778777789989999999999996678999999999999999999999999999999999999999999999999999
Q ss_pred cC-ccccccccccCCCCCC
Q 008693 538 ES-DLANLDCVCGSENNSS 555 (557)
Q Consensus 538 ~~-~~~~~~~~~~~~~~~~ 555 (557)
+. +.++....+...+|+.
T Consensus 484 ~~~~~~~~~~~~~~~~~~~ 502 (510)
T 2cdq_A 484 ESGDLSELLIQPRLGNGSP 502 (510)
T ss_dssp SSCCCCCCCCCCCC-----
T ss_pred cCCcceeeeeeccCCCCcc
Confidence 87 6788888888888885
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-86 Score=713.30 Aligned_cols=426 Identities=30% Similarity=0.481 Sum_probs=362.6
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCc-------CcHHHHHhhHHhhhcCCCcchhhHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGK-------TTNKLLLAGEKAVSCGVTNISCIDELSFVKD 153 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg-------~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~ 153 (557)
+|+|+|||||||+|+++|++|+++|.+. +++++|||||||+ +||.|+++++.+... .++.+.++.+++
T Consensus 3 ~m~V~KFGGtSva~~e~i~~Va~iI~~~-~~~~vVVVSA~gk~~~~d~g~Td~Li~~a~~~~~~----~~~~~~~~~i~~ 77 (446)
T 3tvi_A 3 KIVVTKFGGSSLADSNQFKKVKGIIDSD-ANRKYIIPSAPGKRTNKDYKITDLLYLCNAHVKNG----IPFDDVFKLISQ 77 (446)
T ss_dssp -CEEEEECGGGGSSHHHHHHHHHHHTTC-TTEEEEEECSCCCSSSSSCCHHHHHHHHHHHHHTT----CCCHHHHHHHHH
T ss_pred ccEEEEeCccccCCHHHHHHHHHHHHhc-CCCEEEEECCCCCCCCCCcchHHHHHHHHHHhhcC----ccHHHHHHHHHH
Confidence 6899999999999999999999999874 4678999999995 999999998876543 346788999999
Q ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEe
Q 008693 154 LHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (557)
Q Consensus 154 ~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (557)
+|.+++++|+.+.+. ++++++++..+. ..+.+|+|+|+||++|+.||+++| ++.+++++++++.++
T Consensus 78 ~~~~i~~~L~~~~~~----~~~l~~~~~~l~-----~~~~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~ 143 (446)
T 3tvi_A 78 RYTEIVSELNIDMDI----AYYLEKVKKNIE-----NGASSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDK 143 (446)
T ss_dssp HHHHHHHHHTCCSCH----HHHHHHHHHHHH-----TTCCHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC
T ss_pred HHHHHHHHhcccHHH----HHHHHHHHHHHh-----cCccHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCC
Confidence 999999999877543 233333333321 126789999999999999999996 589999999865544
Q ss_pred cCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 234 ~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+++.+++.+++.+.+ +++.+.|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||
T Consensus 144 ---~~~~~~~~~~~~l~~-----~l~~~~v~Vv~Gf~g~~-~~g~~~tl~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvy 214 (446)
T 3tvi_A 144 ---SGCFDEKKSYEKIKE-----KVLSCNKAVIPGFYGSS-FNGDVKTFSRGGSDVTGSIISAGVNADLYENWTDVSGFL 214 (446)
T ss_dssp -----CBCHHHHHHHHHH-----HTTTCSSEECCCSEEEC-TTSCEEECSSSTTHHHHHHHHHHTTCSEEEEEESSSSCB
T ss_pred ---CCceehHhhHHHHHH-----HHhcCCeEEeeCceecC-CCCCeEEEccCCchHHHHHHHHHcCCCEEEEEeCCCccC
Confidence 445555555544432 35678999999999999 589999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcc--eeeEEee
Q 008693 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKA--VLTSIVL 391 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~--~Vt~Is~ 391 (557)
|+|||++|+|++|+++||+||.||+++|++||||+|++||+++|||++|+|+++|+.+||+|.+...+.+. .|++|+.
T Consensus 215 t~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i~~~~~p~~~GT~i~~~~~~~~~~~~v~gIa~ 294 (446)
T 3tvi_A 215 MADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAG 294 (446)
T ss_dssp SSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEEEETTBTTSCCEEEECTTTSCCCTTCCCEEEE
T ss_pred CCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEEecCCCCCCCCEEEecCCcccccCcceEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999987654333 7999999
Q ss_pred eccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhh---hhee
Q 008693 392 KRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEK---IAIV 468 (557)
Q Consensus 392 ~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~---~~~i 468 (557)
++|+++|++.+.+|.+.+||++++|+.|++++|+|+++++++.+++|+++++++.. .+..+++++.. ...+
T Consensus 295 ~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~~~~~is~~V~~~d~~~------~~~~~~~el~~~~~~~~v 368 (446)
T 3tvi_A 295 KKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPSGVDSVSLVIEDCKLDG------KCDKIIEEIKKQCNPDSI 368 (446)
T ss_dssp EEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCEETTEEEEEEEHHHHTT------THHHHHHHHHHHSCCSEE
T ss_pred cCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEecCCCEEEEEEecchHHH------HHHHHHHHHHHhcCCCcE
Confidence 99999999999999999999999999999999999999999999999998876431 12233334433 3568
Q ss_pred ecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCc
Q 008693 469 NLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESD 540 (557)
Q Consensus 469 ~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~ 540 (557)
++.+++++|++||. |...||+++|+|++|+++||||+||+||+|+++||++|+++|.++|+++||++||+..
T Consensus 369 ~v~~~vA~VSvVG~gM~~~~Gvaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~~~Av~aLH~~ff~~~ 441 (446)
T 3tvi_A 369 EIHPNMALVATVGTGMAKTKGIANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDFEKAVKSIYNAFNEGH 441 (446)
T ss_dssp EEEEEEEEEEEECGGGSSCTTHHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGHHHHHHHHHHHHC---
T ss_pred EEeCCeEEEEEECCCccCChhHHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHHHHHHHHHHHHHhccc
Confidence 88899999999997 8889999999999999999999999999999999999999999999999999999863
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-86 Score=714.24 Aligned_cols=443 Identities=35% Similarity=0.514 Sum_probs=385.1
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
|+|+|+|||||||+|++++++|+++|... .++++||||||||+||.|+++++.+. ...+.+.++.++++|.+++
T Consensus 2 m~~~V~KFGGTSv~~~e~i~~va~ii~~~-~~~~vVVvSA~g~~Td~L~~~~~~~~-----~~~~~~~i~~i~~~~~~i~ 75 (449)
T 2j0w_A 2 SEIVVSKFGGTSVADFDAMNRSADIVLSD-ANVRLVVLSASAGITNLLVALAEGLE-----PGERFEKLDAIRNIQFAIL 75 (449)
T ss_dssp -CCEEEEECSGGGSSHHHHHHHHHHHTSC-TTEEEEEECCCTTHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHH
T ss_pred CccEEEEECCccCCCHHHHHHHHHHHHhc-CCCEEEEeCCCCchHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999764 34789999999999999999876531 1235556889999999999
Q ss_pred HHhCCCHH---HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 160 DELGIDRS---IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 160 ~~l~~~~~---~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
++|..+.. .++..+++| +.+.++..+.+ +++.+|+++|+||.+|+.+++.+|+++|+++++++++|+ ++|+++|
T Consensus 76 ~~l~~~~~~~~~i~~~~~~l-~~l~~~~~~~~-~~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~-l~t~~~~ 152 (449)
T 2j0w_A 76 ERLRYPNVIREEIERLLENI-TVLAEAAALAT-SPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRF 152 (449)
T ss_dssp TTSSSTHHHHHHHHHHHHHH-HHHHHHHTTCC-CHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCT
T ss_pred HHhcccHHHHHHHHHHHHHH-HHHhhhhccCc-CHHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHh-eeecCCC
Confidence 99987643 577888888 55677776655 599999999999999999999999999999999999999 8898899
Q ss_pred CCceeeecch-HHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 237 TNADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 237 ~~a~i~~~~~-~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
+++++...+. .+..+.+ ..|++. .|||++||+|.+ ++|.++|+||||||++|+++|.+|+|+++++||||||||++
T Consensus 153 ~~~~~~~~~~~~~~~~~l-~~l~~~-~IpVv~Gf~g~~-~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 229 (449)
T 2j0w_A 153 GRAEPDIAALAELAALQL-LPRLNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTT 229 (449)
T ss_dssp TSCCBCHHHHHHHHHHHT-HHHHHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESS
T ss_pred CCccccHhHhHHHHHHHH-HHHhcC-CEEEEeCCeeeC-CCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcC
Confidence 8887754332 2223223 233433 499999999999 58999999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCcceeeEEeeeccE
Q 008693 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSKAVLTSIVLKRNV 395 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~~~Vt~Is~~~ni 395 (557)
|||++|+|++|+++||+|+.+|+++|+|||||+|++||+++|||++|+|+++|+.+||+|.+... ....|++|+.++|+
T Consensus 230 DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a~~~gi~v~I~~~~~p~~~GT~I~~~~~-~~~~v~gIa~~~~~ 308 (449)
T 2j0w_A 230 DPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKTE-NPPLFRALALRRNQ 308 (449)
T ss_dssp CTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCCS-SCCSEEEEEEEEEE
T ss_pred CCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHHHHCCCeEEEEECCCCCCCeeEEecccc-cccccccceeeCCE
Confidence 99999999999999999999999999999999999999999999999999999999999998653 34569999999999
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeeccccee
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRS 475 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~a 475 (557)
++|++.+.+|.+.+||++++|+.|++++|+|+||++|+.++||+++.++.+.... ...++++..+++.+..+++.++++
T Consensus 309 ~~i~i~~~~m~~~~g~~~~if~~l~~~~i~vd~i~ss~~sis~~v~~~~~~~~~~-~~~~~~~~~el~~~~~v~~~~~~a 387 (449)
T 2j0w_A 309 TLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTGD-TLLTQSLLMELSALCRVEVEEGLA 387 (449)
T ss_dssp EEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCCSSTTC-CSSCHHHHHHHHHHSCEEEEEEEE
T ss_pred EEEEEEecCCCCccCHHHHHHHHHHHcCCCEEEEEeCCCeEEEEEeccccchhhH-HHHHHHHHHHhccCCeEEEeCCeE
Confidence 9999999999999999999999999999999999999999999999765311000 012344555666567788889999
Q ss_pred EEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 476 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 476 iIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+|++||. |...+|+++|+|++|++ |||.||+||+|+++|||+|+++|.++|+++||++||+
T Consensus 388 ~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~~~Av~~lh~~f~~ 449 (449)
T 2j0w_A 388 LVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 449 (449)
T ss_dssp EEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred EEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHHHHHHHHHHHHHhC
Confidence 9999997 88899999999999964 9999999999999999999999999999999999984
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-72 Score=628.85 Aligned_cols=395 Identities=28% Similarity=0.428 Sum_probs=338.9
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|+++|+|||||||+|++++++++++|... .+.+++||+||||++||.|++++...
T Consensus 1 m~~iViK~GGssl~~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~----------------------- 57 (600)
T 3l76_A 1 MALIVQKFGGTSVGTVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQI----------------------- 57 (600)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHH-----------------------
T ss_pred CceEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhh-----------------------
Confidence 67899999999999999999999999874 24678999999999999998754311
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
. ...+++.+|+++++||++|+.+++.+|+++|+++++++++|+++++++.++
T Consensus 58 -----~-----------------------~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~ 109 (600)
T 3l76_A 58 -----S-----------------------PNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHS 109 (600)
T ss_dssp -----C-----------------------SSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC----
T ss_pred -----c-----------------------cCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCC
Confidence 0 123577889999999999999999999999999999999999999988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCC--ceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTC--AITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G--~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
++++...++..+.+ +++.+.|||++||+|.+ ++| .++||||||||++|+++|.+|+|++|++||||||||++
T Consensus 110 ~~~~~~~~~~~i~~-----ll~~g~IpVv~Gf~g~~-~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~ 183 (600)
T 3l76_A 110 RARILEIRPDRLEH-----HLREGKVVVVAGFQGIS-SVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTT 183 (600)
T ss_dssp ---CCEEEECCHHH-----HHTTTCEEEEECEEEC-----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSS
T ss_pred CceeccccHHHHHH-----HHhCCCEEEEECCeecC-CCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCC
Confidence 88876666554443 24678999999999999 489 99999999999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCC--------CCcceee
Q 008693 316 DPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD--------MSKAVLT 387 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~--------~~~~~Vt 387 (557)
|||++|+|++|+++||+|+.+|+++|+++|||+|++||+++|||++|+|+++| ++||+|.+... +.+..|+
T Consensus 184 dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~-~~GT~I~~~~~~~~~~~~~~~~~~v~ 262 (600)
T 3l76_A 184 DPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD-EPGTKVVAPPVQNRSLVGLEIAKAVD 262 (600)
T ss_dssp CTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC-SCCEEEECCCCCSCCCCCCBSSCSCC
T ss_pred CCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC-CCCeEEecCCccccccccccccCcce
Confidence 99999999999999999999999999999999999999999999999999985 79999998653 2345799
Q ss_pred EEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC-----ceeEEEeCCchhhhHHHHHHHHHHHHHHH
Q 008693 388 SIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-----VSLSLTLDPSKLWSRELIQQELDHVVEEL 462 (557)
Q Consensus 388 ~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe-----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l 462 (557)
+|+.++|+++|++. +|.+.+||++++|+.|++++|+|+||+++. .+++|+++.+++... .+.++++..++
T Consensus 263 gi~~~~~~~~i~i~--~~~~~~g~~~~if~~La~~~I~Vd~I~qs~~~~~~~~Isftv~~~~~~~a---~~~l~~~~~el 337 (600)
T 3l76_A 263 GVEYDADQAKVALL--RVPDRPGVASKLFRDIAQQQVDIDLIIQSIHDGNSNDIAFTVVKDLLNTA---EAVTSAIAPAL 337 (600)
T ss_dssp EEEEECCCEEEEEE--EEECSTTHHHHHHHHHHHTTCCCCCEEBCCCBTTEEEEEEEECGGGHHHH---HHHHHHHGGGG
T ss_pred EEEeeCCEEEEEEe--CCCCcccHHHHHHHHHHHcCCCEEEEEeeccCCCCceEEEEEeHHHHHHH---HHHHHHHHHHh
Confidence 99999999999998 688999999999999999999999999876 689999998875431 22234433344
Q ss_pred h------hhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 463 E------KIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 463 ~------~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
. ....+.+.+++++|++||. |...+|+++++|++|++++|||.||++ |+++|+++|+++|.++|+++||++
T Consensus 338 ~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~~Gv~a~if~aL~~~~Ini~~ist--Se~~Is~vI~~~d~~~Av~aLh~~ 415 (600)
T 3l76_A 338 RSYPEADQEAEIIVEKGIAKIAIAGAGMIGRPGIAAKMFKTLADVGVNIEMIST--SEVKVSCVIDQRDADRAIAALSNA 415 (600)
T ss_dssp SSSTTCSSSSEEEEECSEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred hccccccCcceeEecCCeEEEEEECCCcccCccHHHHHHHHHHhCCCcEEEEec--CCCEEEEEEcHHHHHHHHHHHHHh
Confidence 1 3457888899999999997 888999999999999999999999995 899999999999999999999999
Q ss_pred hccC
Q 008693 536 FFES 539 (557)
Q Consensus 536 f~~~ 539 (557)
|+..
T Consensus 416 f~~~ 419 (600)
T 3l76_A 416 FGVT 419 (600)
T ss_dssp TTCC
T ss_pred hccc
Confidence 9986
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-72 Score=599.69 Aligned_cols=394 Identities=34% Similarity=0.488 Sum_probs=313.8
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|+++|+|||||||++++++++++++|... .+.++|||+||+|+.||.|++.....
T Consensus 1 m~~iViK~GGssl~~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~----------------------- 57 (421)
T 3ab4_A 1 MALVVQKYGGSSLESAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAV----------------------- 57 (421)
T ss_dssp -CEEEEEECSGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHH-----------------------
T ss_pred CCeEEEEEChhHhCCHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhh-----------------------
Confidence 57899999999999999999999999764 34578999999999999998753210
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
....+++.+|+++++||.+|+.+++++|+++|+++++++++++++++++.|+
T Consensus 58 ----------------------------~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~ 109 (421)
T 3ab4_A 58 ----------------------------NPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHG 109 (421)
T ss_dssp ----------------------------CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC-----------
T ss_pred ----------------------------ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCC
Confidence 0123578899999999999999999999999999999999999899988888
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCC-CceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCC
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT-CAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~-G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taD 316 (557)
++++...+.+.+.+ +++.+.|||++||+|.+ ++ |+++|+||||||++|+++|.+|+|++|++||||||||++|
T Consensus 110 ~~~v~~~~~~~i~~-----~l~~g~ipVv~g~~g~~-~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~d 183 (421)
T 3ab4_A 110 NARIVDVTPGRVRE-----ALDEGKICIVAGFQGVN-KETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTAD 183 (421)
T ss_dssp ------CCHHHHHH-----HHHTTCEEEC-------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSC
T ss_pred CeeechhhHHHHHH-----HHhCCCEEEEeCCcCcC-CCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCC
Confidence 88887766665543 34678999999999998 58 9999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecC-CC--CCcceeeEEeeec
Q 008693 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS-RD--MSKAVLTSIVLKR 393 (557)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~-~~--~~~~~Vt~Is~~~ 393 (557)
||++|++++|++|||+|+.+|+++|++++||+|+++|+++|||++|+|+++| ++||+|.++ .. +....|++|+.++
T Consensus 184 Pr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~-~~GT~I~~~~~~~~~~~~~i~~i~~~~ 262 (421)
T 3ab4_A 184 PRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN-DPGTLIAGSMEDIPVEEAVLTGVATDK 262 (421)
T ss_dssp TTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC-CCCEEECSCGGGSCTTTCCCCEEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC-CCCeEEEecCcccccccCccceEEeeC
Confidence 9999999999999999999999999999999999999999999999999999 799999876 32 2344699999999
Q ss_pred cEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc--cC-----ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh
Q 008693 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT--SE-----VSLSLTLDPSKLWSRELIQQELDHVVEELEKIA 466 (557)
Q Consensus 394 nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist--Se-----~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~ 466 (557)
|+++|++.+ |.+.+|+++++|+.|+++||+|+||++ ++ .+++|+++.++.... .+.++++..++. ..
T Consensus 263 ~~~~i~v~~--~~~~~g~~~~If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a---~~~l~~~~~~~~-~~ 336 (421)
T 3ab4_A 263 SEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRA---MEILKKLQVQGN-WT 336 (421)
T ss_dssp SEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHH---HHHHHHHHTTTT-CS
T ss_pred CEEEEEEec--cCCcccHHHHHHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHH---HHHHHHHHHHcC-Cc
Confidence 999999996 778899999999999999999999963 43 589999998764321 122333333333 34
Q ss_pred eeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 467 IVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 467 ~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
.+.+.+++++|++||. |...||+++++|++|+++||||.||++ |+.+|+++|+++|.++|+++||++|+++
T Consensus 337 ~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vV~~~d~~~Av~~Lh~~f~~~ 408 (421)
T 3ab4_A 337 NVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST--SEIRISVLIREDDLDAAARALHEQFQLG 408 (421)
T ss_dssp EEEEECCEEEEEEECGGGTSCTTHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHHHHHHTTCC
T ss_pred eEEEeCCeEEEEEEccCcccCccHHHHHHHHHHHCCCCEEEEEc--CCCeEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 6888899999999997 888999999999999999999999985 8999999999999999999999999975
|
| >2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.4e-30 Score=256.67 Aligned_cols=218 Identities=24% Similarity=0.317 Sum_probs=165.8
Q ss_pred CCcceEEEEecccccCC-------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 78 EKQLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 78 ~~~~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
+.++++|+||||+++.+ .+.++++++.|.... +.++|+|+|| |...+.+.
T Consensus 10 ~~~~~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~Gg-G~~~~~~~-------------------- 68 (255)
T 2jjx_A 10 RPYKRVLIKLSGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGG-GNIFRGHL-------------------- 68 (255)
T ss_dssp CBCSEEEEEECGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCHHH--------------------
T ss_pred ccCCEEEEEECHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECc-hHHHhhhH--------------------
Confidence 45678999999999995 789999999998642 3466777776 55544321
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHH-cCCceEEeccce
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNK-IGVKARQYDAFD 227 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~-~Gi~a~~l~~~~ 227 (557)
++.++.+.. +....+++. ..+++.||+.+|++ +|+++.++++.+
T Consensus 69 ----------~~~~g~~~~----------------------~~~~~~~~~---~~~~~~ll~~~l~~~~Gi~a~~l~~~~ 113 (255)
T 2jjx_A 69 ----------AEEWGIDRV----------------------EADNIGTLG---TIINSLMLRGVLTSKTNKEVRVMTSIP 113 (255)
T ss_dssp ----------HHHTTCCHH----------------------HHHHHHHHH---HHHHHHHHHHHHHHHCSSCEEEEESSC
T ss_pred ----------HHHcCCCCC----------------------ChHHHhHHH---HHHHHHHHHHHHHhhcCCceEEecHHH
Confidence 112222210 001123333 37899989999999 999999999988
Q ss_pred eEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEee
Q 008693 228 IGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK 307 (557)
Q Consensus 228 ~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~T 307 (557)
.+++++ ..+...+ . .+++.+.|||++| | + .++.++ +|++|+++|.+|+|+++++||
T Consensus 114 ~~~v~~---------~~~~~~~----~-~lL~~g~IpVi~g--g-~-g~~~vt------tD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 114 FNAVAE---------PYIRLRA----V-HHLDNGYIVIFGG--G-N-GQPFVT------TDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp CCSSSE---------ECCHHHH----H-HHHHTTCEEEEES--T-T-SCSSCC------SHHHHHHHHHHHTCSEEEEEE
T ss_pred cCcccC---------cccHHHH----H-HHHhCCcEEEEeC--C-C-CCCccc------hHHHHHHHHHhcCCCEEEEEe
Confidence 643322 1122222 2 2457899999998 3 2 133333 699999999999999999999
Q ss_pred -CCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEec
Q 008693 308 -DVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 308 -DVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
||||||++||+++|++++|++|||+|+.++ |.+++||.|++++.++|+|++|.|+++|+ ..||+|.+
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~---G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~ 246 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQ---NIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLIND 246 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEES
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHc---CCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEec
Confidence 999999999999999999999999998875 99999999999999999999999999984 68999987
Q ss_pred C
Q 008693 378 S 378 (557)
Q Consensus 378 ~ 378 (557)
+
T Consensus 247 ~ 247 (255)
T 2jjx_A 247 D 247 (255)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-30 Score=255.06 Aligned_cols=205 Identities=18% Similarity=0.221 Sum_probs=159.9
Q ss_pred ceEEEEecccccC--CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLA--SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 81 ~~~V~KFGGsSv~--~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
+++|+||||+++. +++.++++++.|.... +.++|+|+|| |.+++.+++
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~~i~~l~~~g~~vvlV~gg-G~~~~~~~~--------------------------- 52 (226)
T 2j4j_A 1 MNIILKISGKFFDEDNVDNLIVLRQSIKELADNGFRVGIVTGG-GSTARRYIK--------------------------- 52 (226)
T ss_dssp CEEEEEECTHHHHTCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHH---------------------------
T ss_pred CeEEEEeccccccCCCHHHHHHHHHHHHHHHhCCCeEEEEECc-chHhchhHH---------------------------
Confidence 3689999999999 8999999999998642 3456666665 555554432
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
++++++. +++..|.+.++|+.+++.|++.+|+++|+++ +
T Consensus 53 -~~~~~g~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~------------ 91 (226)
T 2j4j_A 53 -LAREIGI-------------------------GEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V------------ 91 (226)
T ss_dssp -HHHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C------------
T ss_pred -HHHHhCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C------------
Confidence 2223332 2345677888999999999999999999854 1
Q ss_pred CCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCC
Q 008693 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (557)
Q Consensus 237 ~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taD 316 (557)
..++..+. .+++.+.|||++| | . . .+++|++|+++|.+|+|+++++||||||||++|
T Consensus 92 ------~~~~~~i~-----~ll~~g~ipVi~g--g-~-~--------~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~d 148 (226)
T 2j4j_A 92 ------PQSLEEFI-----QDWSHGKVVVTGG--F-Q-P--------GQSTAAVAALVAEASSSKTLVVATNVDGVYEKD 148 (226)
T ss_dssp ------CSSHHHHH-----HHHTTSSBEEECC--C-S-T--------TSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSC
T ss_pred ------cCCHHHHH-----HHHHCCCEEEEcC--C-C-C--------CCCcHHHHHHHHHhcCCCEEEEeeccceeeCCC
Confidence 12233332 2357889999999 3 2 1 345999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHc-CCC------cchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEec
Q 008693 317 PNIHPHAKPVPYLTFDEAAELAYF-GAQ------VLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~-Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
|+++|++++|+++||+|+.+++.. |++ ++||+++.+|.++|+|++|.|+++|+ ..||+|.+
T Consensus 149 P~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 149 PRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp TTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred CCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 999999999999999999999644 676 99999999999999999999988874 46888864
|
| >1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=7.4e-30 Score=253.47 Aligned_cols=214 Identities=21% Similarity=0.293 Sum_probs=164.4
Q ss_pred cceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 80 ~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
++++|.||||+++. +.+.++++++.|.... +.++|+|+|+ |...+...
T Consensus 7 ~~~iViK~GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~Gg-G~~~~g~~---------------------- 63 (239)
T 1ybd_A 7 YKRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGG-GNIFRGVS---------------------- 63 (239)
T ss_dssp CSEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHH----------------------
T ss_pred CCEEEEEEchHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-cHHHhchh----------------------
Confidence 57899999999999 4689999999998753 3455556554 32211110
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
+..++. +++..|.+.++|+.+|+.++..+|.+.|+++.++++.+.+.
T Consensus 64 --------~~~~~~-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~ 110 (239)
T 1ybd_A 64 --------AQAGSM-------------------------DRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQ 110 (239)
T ss_dssp --------HHHTTS-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSS
T ss_pred --------HHHcCC-------------------------CCccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccc
Confidence 122332 22344567778999999999999999999999999876533
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
+.. +| .+ . ... .+++.+.|||++||.|. .++++|++|+++|.+|+|++++||||||
T Consensus 111 ~~~-~~-------~~-~----~~~-~ll~~g~ipVv~g~~g~----------~~~~~D~~Aa~lA~~l~Ad~liilTdVd 166 (239)
T 1ybd_A 111 IAE-TY-------AR-P----KAI-QYLEEGKVVIFAAGTGN----------PFFTTDTAAALRGAEMNCDVMLKATNVD 166 (239)
T ss_dssp SCE-EC-------CH-H----HHH-HHHHTTCEEEEESTTSS----------TTCCHHHHHHHHHHHTTCSEEEEECSSS
T ss_pred ccc-ch-------hH-H----HHH-HHHhCCcEEEEECCccC----------CCCCcHHHHHHHHHhcCCCEEEEeeCCC
Confidence 221 11 11 1 122 23578999999987542 1256999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
|||++||+.+|+|++|++++|+|+.++ |+++|||+++.+|.++|+|++|.|+++|+ ..||+|.
T Consensus 167 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~ 238 (239)
T 1ybd_A 167 GVYTADPKKDPSATRYETITFDEALLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 238 (239)
T ss_dssp SCBSSCGGGCTTCCBCSEEEHHHHHHT---TCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred ccCCCCCCCCCCCeEccccCHHHHHHh---cccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEc
Confidence 999999999999999999999999875 89999999999999999999999998874 4588775
|
| >1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-29 Score=253.47 Aligned_cols=234 Identities=18% Similarity=0.262 Sum_probs=178.5
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|+++|+||||+++.+++.++++++.|... ...+++||||++|+.||.|++........ +
T Consensus 2 m~~~ViK~GGs~l~~~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~-----------------~-- 62 (258)
T 1gs5_A 2 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKK-----------------K-- 62 (258)
T ss_dssp CCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCE-----------------E--
T ss_pred CccEEEEEChhHhCChHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcce-----------------e--
Confidence 45799999999999999999999999753 23567999999999999998753211000 0
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
++++ ..+....+.+ ..+++.+|+.+++ .|+++|+++..+++.+.++++..+.
T Consensus 63 -----------------------~glr---~t~~~~l~~~~~~l~~~~n~~l~~-~l~~~G~~a~~l~~~~~~~~~~~~~ 115 (258)
T 1gs5_A 63 -----------------------NGLR---VTPADQIDIITGALAGTANKTLLA-WAKKHQIAAVGLFLGDGDSVKVTQL 115 (258)
T ss_dssp -----------------------TTEE---CBCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEECTTGGGCEEEEEC
T ss_pred -----------------------CCEe---eCCHHHHHHHHHHHhccchHHHHH-HHHHCCCCeEEEeecCCCEEEEEEc
Confidence 0000 0011111111 2346689998886 5799999999999999888887532
Q ss_pred C----C-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 237 T----N-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 237 ~----~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
. . .++...+.+.++. +++++.|||++|| |.+ .+|++++++ +|++|+.+|.+|+|+ +++||||||
T Consensus 116 ~~d~~~~g~~~~~~~~~i~~-----ll~~g~ipVi~~~-g~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad-li~ltdV~G 184 (258)
T 1gs5_A 116 DEELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGAD-LILLSDVSG 184 (258)
T ss_dssp CGGGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCE-EEEEESSSS
T ss_pred CCCCCCcCceeEECHHHHHH-----HHHCCCEEEEeCC-cCC-CCCcEEEec---HHHHHHHHHHHhCCc-EEEEeCCCc
Confidence 2 1 2344455554433 3568899999998 777 589999886 999999999999999 999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
||++| +++|+++||+|+.+++..|. ++.|+.|++++++.++|++|.|+++|+ ..||+|.
T Consensus 185 v~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 185 ILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred eECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 99986 57899999999999987654 778888999999999999999988763 4688875
|
| >2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-29 Score=251.01 Aligned_cols=217 Identities=21% Similarity=0.275 Sum_probs=160.4
Q ss_pred CcceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHH
Q 008693 79 KQLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~ 149 (557)
.|+++|.||||+++. +.+.++++++.|.... +.++|+|+|+ |.+.+.+.
T Consensus 7 ~~k~iViKlGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGg-G~~~~~~~--------------------- 64 (247)
T 2a1f_A 7 IYKRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGG-GNLFRGAK--------------------- 64 (247)
T ss_dssp SCSEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECC-TTTCCCHH---------------------
T ss_pred cccEEEEEEChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-ChHhcchh---------------------
Confidence 367899999999999 5689999999998743 2345555555 55543221
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeE
Q 008693 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (557)
Q Consensus 150 ~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (557)
+..++. +++..|.+.++|+.+|+.++..+|.+.|+++.++++.+.+
T Consensus 65 ---------~~~~g~-------------------------~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~ 110 (247)
T 2a1f_A 65 ---------LAKAGM-------------------------NRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLN 110 (247)
T ss_dssp ---------HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCT
T ss_pred ---------HHHcCC-------------------------CCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccc
Confidence 112222 2334566778899999999999999999999999987753
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 230 iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
.+.+ .| .... +. .+++.+.|||++|+.| . .++++|++|+.+|.+|+|++++|||||
T Consensus 111 ~~~~-~~--------~~~~----~~-~ll~~g~ipVi~~~~g------~----~~~~~D~~Aa~lA~~l~Ad~liilTDV 166 (247)
T 2a1f_A 111 GICD-TY--------NWSE----AI-KMLREKRVVIFSAGTG------N----PFFTTDSTACLRGIEIEADVVLKATKV 166 (247)
T ss_dssp TTSE-EC--------CHHH----HH-HHHHTTCEEEEESTTS------C----SSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred cccc-hh--------hHHH----HH-HHHhCCCEEEEeCCcC------C----CCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence 2211 11 1122 22 3457889999998532 2 235699999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEecC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRS 378 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (557)
||||++|||++|++++|+++||+|+.++ |+++|||+++.+|.++|+|++|.|+++|+ ..||+|...
T Consensus 167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~---g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~~ 241 (247)
T 2a1f_A 167 DGVYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICEG 241 (247)
T ss_dssp SSCBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECCC
T ss_pred CcccCCCCCCCCCCeEcccCCHHHHHHc---CccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEeec
Confidence 9999999999999999999999999875 89999999999999999999999998773 468888653
|
| >4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-29 Score=247.02 Aligned_cols=214 Identities=22% Similarity=0.298 Sum_probs=160.6
Q ss_pred cceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 80 ~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
++.+|.||||+++. |.+.++++++.|.... +.++|+|+|+ |.+.+.+...
T Consensus 7 ~k~iViKiGGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gG-G~~~~g~~~~-------------------- 65 (240)
T 4a7w_A 7 NKRVLVKFSGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGG-GNIIRGVSAA-------------------- 65 (240)
T ss_dssp CCEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTTC--------------------------
T ss_pred CCEEEEEECHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECC-cHHHhHhHHH--------------------
Confidence 56799999999998 7899999999998753 3456666665 5554322100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.++. ......|++-.+.+.+|+.+++.+|+++|++++.+++.+++.
T Consensus 66 ----------~~G~------------------------~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~ 111 (240)
T 4a7w_A 66 ----------QGGI------------------------IRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKE 111 (240)
T ss_dssp -------------C------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTT
T ss_pred ----------hcCC------------------------CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCc
Confidence 0110 011222333334568999999999999999999999887642
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
.+ + ..+...+. .+++++.|||++|+.|.. . +.+|++|+++|.+|+|+.+++|||||
T Consensus 112 ~~-------~--~~~~~~i~-----~lL~~g~ipVi~~~~g~~----~------~~~D~~Aa~lA~~l~Ad~li~lTdVd 167 (240)
T 4a7w_A 112 IC-------E--SYIYRKAI-----RHLEKGRVVIFGAGTGNP----F------FTTDTAATLRAIEIGSDLIIKATKVD 167 (240)
T ss_dssp TS-------E--ECCHHHHH-----HHHHTTCEEEEESTTSCT----T------SCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred cc-------C--cCcHHHHH-----HHHHCCCEEEEeCCCCCC----C------CChHHHHHHHHHHcCCCEEEEccCCC
Confidence 11 1 12333332 235788999999965421 1 34999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC----------CCCeeE
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN----------APGTLI 375 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I 375 (557)
|||++||+++|+|+++++++|+|+.++ |.+++||+|+.+|.++|+|++|.|+++|+ +.||.|
T Consensus 168 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i 239 (240)
T 4a7w_A 168 GIYDKDPNKFKDAKKLDTLSYNDALIG---DIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMV 239 (240)
T ss_dssp SEESSCTTTCTTCCEESEECHHHHHHS---SCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEE
T ss_pred ceECCCCCCCCCCeEcceecHHHHHhc---CccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceee
Confidence 999999999999999999999998874 89999999999999999999999999874 357776
|
| >2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.8e-29 Score=253.58 Aligned_cols=240 Identities=20% Similarity=0.267 Sum_probs=183.6
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|+||||+++.+++.++++++.|.... ....+|||+++|..++.+++...
T Consensus 25 ~k~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 78 (299)
T 2ap9_A 25 GKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLG-------------------------- 78 (299)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 467999999999999999999999887643 23345555557777777765321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
... ++.+++ +..++...|.+ ++.|+ ++.. +..+|++.|++++.+++.+.+++++..+
T Consensus 79 -----~~~-----------~~~~g~---R~t~~~~l~~~~~~~~G~-l~~~-l~~~L~~~g~~av~lt~~d~~~~~~~~~ 137 (299)
T 2ap9_A 79 -----IEG-----------DFKGGF---RVTTPEVLDVARMVLFGQ-VGRE-LVNLINAHGPYAVGITGEDAQLFTAVRR 137 (299)
T ss_dssp -----CCC-----------CCSSSS---CCBCHHHHHHHHHHHHHT-HHHH-HHHHHTTSSSCEEEEETTGGGCEEEEEC
T ss_pred -----Ccc-----------cccCCc---ccCCHHHHHHHHHHHhhH-HHHH-HHHHHHhCCCCceEechhHCCEEEEEec
Confidence 000 000111 22345555554 34687 5665 6889999999999999999878876543
Q ss_pred C------------CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEE
Q 008693 237 T------------NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (557)
Q Consensus 237 ~------------~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~ 304 (557)
+ .+++...+.+.+.+ +++.|.|||++|| +.+ ++|+.++++ +|++|+.+|.+|+|++++
T Consensus 138 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVv~~v-~~~-~~G~~~~l~---~D~~Aa~lA~~l~Ad~li 207 (299)
T 2ap9_A 138 SVTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLL 207 (299)
T ss_dssp CBCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEE
T ss_pred ccccccccCCCCcceeEEEecHHHHHH-----HHhCCCeEEECCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 2 12343445554433 3568899999997 877 479999996 999999999999999999
Q ss_pred EeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CC
Q 008693 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------AP 371 (557)
Q Consensus 305 i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~ 371 (557)
|||||||||++||+ ++++|++|||+|+.+++.+|...|+|| ++..+.++|+| ++|.|+.+|+ ..
T Consensus 208 ilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~ 284 (299)
T 2ap9_A 208 MLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGT 284 (299)
T ss_dssp EEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCC
T ss_pred EEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCC
Confidence 99999999999998 689999999999999999999999998 88899999999 9999988875 35
Q ss_pred CeeEecCC
Q 008693 372 GTLIRRSR 379 (557)
Q Consensus 372 GT~I~~~~ 379 (557)
||+|.+..
T Consensus 285 GT~i~~~~ 292 (299)
T 2ap9_A 285 GTKVVRGE 292 (299)
T ss_dssp SEEEECCC
T ss_pred cEEEecCC
Confidence 89997653
|
| >1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-28 Score=244.89 Aligned_cols=218 Identities=20% Similarity=0.230 Sum_probs=166.7
Q ss_pred cceEEEEecccccC-------CHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 80 QLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 80 ~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
++++|+||||+++. +.+.++++++.|.... ....+|+|++.|...+.+.
T Consensus 7 ~k~iViKlGGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~----------------------- 63 (252)
T 1z9d_A 7 YQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEP----------------------- 63 (252)
T ss_dssp CSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHH-----------------------
T ss_pred CCEEEEEEchHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccch-----------------------
Confidence 56799999999999 4689999999998753 2334444454455544331
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
+++++.+ ++..|.+.++++.+++.++..+|.+.|++++.+++.+.+.+
T Consensus 64 -------~~~lg~~-------------------------~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~ 111 (252)
T 1z9d_A 64 -------AADAGMD-------------------------RVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNV 111 (252)
T ss_dssp -------HHHHTCC-------------------------HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTT
T ss_pred -------HHHcCCC-------------------------CCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence 0112222 22234556678899999999999999999999988765322
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEee-CCC
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWK-DVD 310 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~T-DVd 310 (557)
++ .| . .. .+ ..+++.+.|||++|+. |. .++++|++|+.+|.+|+|++++||| |||
T Consensus 112 ~~-~~-------~-~~----~~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilT~DVd 167 (252)
T 1z9d_A 112 AE-PY-------I-RG----RA-LRHLEKNRIVVFGAGI------GS----PYFSTDTTAALRAAEIEADAILMAKNGVD 167 (252)
T ss_dssp BE-EC-------C-HH----HH-HHHHHTTCEEEEESTT------SC----TTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred cC-cc-------h-HH----HH-HHHHhCCCEEEEeCCc------CC----CCCChHHHHHHHHHhcCCCEEEEecCCCC
Confidence 11 11 1 12 22 2346789999999843 21 2466999999999999999999999 999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEecCC
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRRSR 379 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~~~ 379 (557)
|||++||+++|++++|++++|+|+.+ +|+++||++++.+|.++|+|++|.|+++|+ ..||+|.+..
T Consensus 168 Gvy~~dP~~~~~a~~i~~i~~~e~~~---~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 242 (252)
T 1z9d_A 168 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKV 242 (252)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC-
T ss_pred eeeCCCCCCCCCCeEeeEecHHHHHh---ccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCC
Confidence 99999999999999999999999887 588999999999999999999999999885 6799998754
|
| >3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-28 Score=242.23 Aligned_cols=215 Identities=21% Similarity=0.277 Sum_probs=164.2
Q ss_pred cceEEEEecccccCC-------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
++++|.|+||+++.+ .+.++++++.|.... +.++++|+|+ |.+..... .
T Consensus 9 ~~riViKlGGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gG-G~~~~~~~-~-------------------- 66 (243)
T 3ek6_A 9 YRRILLKLSGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGG-GNIFRGAG-L-------------------- 66 (243)
T ss_dssp CSEEEEEECGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECS-TTTSCSTT-T--------------------
T ss_pred CcEEEEEEchhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-CHHHHHHH-H--------------------
Confidence 567999999999986 679999999998753 3455666664 44321110 0
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
..++. +....|++.....++|+.++..+|++.|++++.+++.+.+.
T Consensus 67 ---------~~~g~-------------------------~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~ 112 (243)
T 3ek6_A 67 ---------AASGM-------------------------DRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKIND 112 (243)
T ss_dssp ---------SCSSS-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTT
T ss_pred ---------HHcCC-------------------------CCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCc
Confidence 01121 12223444445668999999999999999999999988643
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
+++ + .+...+ . .++++|.|||++|+.|.. .+.+|++|+++|.+|+|+.+++|||||
T Consensus 113 v~~-~--------~~~~~~----~-~lL~~g~IpVv~~~~g~~----------~~~~D~~Aa~lA~~l~Ad~li~lTdVd 168 (243)
T 3ek6_A 113 VCE-D--------FIRRRA----I-RHLEKGRIAIFAAGTGNP----------FFTTDSGAALRAIEIGADLLLKATKVD 168 (243)
T ss_dssp TBE-E--------CCHHHH----H-HHHHTTCEEEEESTTSST----------TCCHHHHHHHHHHHHTCSEEEEECSSS
T ss_pred ccC-c--------CCHHHH----H-HHHHCCcEEEEECCCCCC----------cCChHHHHHHHHHHcCCCEEEEEeCCC
Confidence 322 1 122222 2 245789999999964421 245999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEec
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
|||++||+++|+|+++++++|+|+.+. |.+++|++|+..|.++|+|++|.|+++|+ ..||+|.+
T Consensus 169 Gvy~~dp~~~p~a~~i~~i~~~e~~~~---g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 169 GVYDKDPKKHSDAVRYDSLTYDEVIMQ---GLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SCBSSCGGGCTTCCBCSEECHHHHHHH---TCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred ccCCCCCCCCCCceecccccHHHHHhC---CchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999998873 88999999999999999999999998874 46999875
|
| >3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-27 Score=242.53 Aligned_cols=215 Identities=21% Similarity=0.335 Sum_probs=157.7
Q ss_pred CcceEEEEecccccC------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 79 KQLTCVMKFGGSSLA------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
..+++|+|+||+++. |.+.++++++.|.+.. +.++++|+|+ |.+...+...
T Consensus 49 ~~krIViKlGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~Gg-G~i~~g~~~~-------------------- 107 (281)
T 3nwy_A 49 GYSRVLLKLGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGG-GNFFRGAQLQ-------------------- 107 (281)
T ss_dssp CCSEEEEEECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECC-TTC---CCTT--------------------
T ss_pred cCcEEEEEEchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECC-hhHhhhHHHH--------------------
Confidence 356799999999998 5789999999998753 2344555544 5443322100
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.++. .....|++..+++++|+.++...|+++|++++.+.+.+.+.
T Consensus 108 ----------~~gl-------------------------~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~ 152 (281)
T 3nwy_A 108 ----------QLGM-------------------------ERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQ 152 (281)
T ss_dssp ----------TTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGG
T ss_pred ----------hcCC-------------------------CccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccc
Confidence 0111 22234566667889999999999999999998888766543
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
++ +.|. +.+... +++++.|||++|+.| .. ++++|++|+++|.+|+||.+++|||||
T Consensus 153 ~~-~~~~------------~~~~l~-lL~~g~IpVv~g~~g------~~----~~~~D~~Aa~lA~~l~Ad~LiilTDVd 208 (281)
T 3nwy_A 153 VA-EPYL------------PLRAVR-HLEKGRVVIFGAGMG------LP----YFSTDTTAAQRALEIGADVVLMAKAVD 208 (281)
T ss_dssp GS-EECC------------HHHHHH-HHHTTCEEEEESTTS------ST----TCCHHHHHHHHHHHTTCSEEEEEESSS
T ss_pred cc-cccc------------hHHHHH-HHHcCCeEEEECCCC------CC----CCCHHHHHHHHHHHcCCCEEEEeeccC
Confidence 32 1221 112222 457899999999543 21 256999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
|||++||+.+|+|++|++++|+|+.+ .|.++++++|+..|.++|+|++|.|.++|+ ..||+|.
T Consensus 209 GVy~~dP~~~p~A~~i~~is~~e~~~---~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 209 GVFAEDPRVNPEAELLTAVSHREVLD---RGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp SCBCC-----CCCCBCSEECHHHHHT---TTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred ccccCCCCcCCCCeEcccccHHHHHH---cCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 99999999999999999999999865 588999999999999999999999998874 4688875
|
| >2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-27 Score=251.13 Aligned_cols=228 Identities=20% Similarity=0.296 Sum_probs=139.9
Q ss_pred cceEEEEecccccCC------HHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 80 QLTCVMKFGGSSLAS------AERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~------~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
.+++|.||||+++.+ .+.++++++.|.... +.++|+|+|++ +.--+.
T Consensus 4 ~k~iVIKiGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGg--i~~g~~----------------------- 58 (367)
T 2j5v_A 4 SQTLVVKLGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGA--IAAGRE----------------------- 58 (367)
T ss_dssp CCEEEEEECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCH--HHHHHH-----------------------
T ss_pred CCEEEEEECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCH--HHHHHH-----------------------
Confidence 367999999999998 489999999988753 34555555543 211110
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
.++.+. +..+....+++++.|+...+.++..+|+++|+++. ++ ++
T Consensus 59 ---------~lg~~~--------------------~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~-----qv-ll 103 (367)
T 2j5v_A 59 ---------HLGYPE--------------------LPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVG-----QM-LL 103 (367)
T ss_dssp ---------HHTSCC--------------------CCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEE-----EE-EE
T ss_pred ---------HcCCCC--------------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceE-----EE-EE
Confidence 122110 12234567778899999999999999999999975 33 55
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceee--cCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITT--LGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~tt--lgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+.++|.+. ..+-+..+.+. .+++.+.|||+.+ +|.+.+ +.+|++|++|+++|.+|+|+.+++||||
T Consensus 104 t~~d~~~~----~r~~n~~~~i~-~LL~~g~IPIv~e-------nd~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDV 171 (367)
T 2j5v_A 104 TRADMEDR----ERFLNARDTLR-ALLDNNVVPVINE-------NDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQ 171 (367)
T ss_dssp CGGGGSSH----HHHHHHHHHHH-HHHHTTCEEEEEE-------CTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC
T ss_pred ecccccCc----eEEEhHHHHHH-HHHHCCCEEEECC-------CCceecccccCCCHHHHHHHHHHhcCCCEEEEeecC
Confidence 66655432 11222223333 3567899999964 233333 6789999999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCH--HHHHHHHH-----cCCCcchH--hHHHHHHhCCCCEEEecCCCCC---------CC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHP--QSMRPAREGDIPVRVKNSYNPN---------AP 371 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~---------~~ 371 (557)
||||++||+.+|++++|+++++ +|+.+++. +|..+|+| +++.+|.++|+|++|.|+++|+ ..
T Consensus 172 dGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~ 251 (367)
T 2j5v_A 172 KGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISV 251 (367)
T ss_dssp ------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCC
T ss_pred CceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCC
Confidence 9999999999999999999999 99999976 48899999 5899999999999999999986 78
Q ss_pred CeeEecCC
Q 008693 372 GTLIRRSR 379 (557)
Q Consensus 372 GT~I~~~~ 379 (557)
||+|.+..
T Consensus 252 GT~i~~~~ 259 (367)
T 2j5v_A 252 GTLFHAQA 259 (367)
T ss_dssp SEEECCCS
T ss_pred cEEEEcCc
Confidence 99998753
|
| >2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-27 Score=236.02 Aligned_cols=206 Identities=20% Similarity=0.253 Sum_probs=156.7
Q ss_pred cceEEEEecccccC----CHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (557)
Q Consensus 80 ~~~~V~KFGGsSv~----~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (557)
.+++|.||||+++. +.+.++++++.|....+...+|+|++.|..++.++..
T Consensus 19 ~k~iViKlGGs~l~~~~~~~~~i~~~~~~i~~l~~g~~vViV~GgG~~~~~~~~~------------------------- 73 (244)
T 2brx_A 19 HMRIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEV------------------------- 73 (244)
T ss_dssp CCEEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEECCHHHHHHHHHH-------------------------
T ss_pred ccEEEEEechhhcCCCCCCHHHHHHHHHHHHHHhCCCeEEEEECccHHHhchHHH-------------------------
Confidence 45799999999999 7799999999998753233344444445555543321
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC
Q 008693 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (557)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (557)
++.++. +....+.+.+.|+.+++.|++.+|+++|+++ +
T Consensus 74 ---~~~~gl-------------------------~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~------~-------- 111 (244)
T 2brx_A 74 ---AEKFNS-------------------------SETFKDFIGIQITRANAMLLIAALREKAYPV------V-------- 111 (244)
T ss_dssp ---HHTTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGBCSS------C--------
T ss_pred ---HHHcCC-------------------------CcccHHHHHHHHHHHHHHHHHHHHHHcCCCC------C--------
Confidence 222332 3345667777799999999998999999754 0
Q ss_pred CCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 236 ~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
..+.+.+. .+++.+.|||++| |.. .+.+|++|+++|.+|+|+++++||||||||++
T Consensus 112 -------~~~~~~i~-----~lL~~g~IpVi~g--g~~----------~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~ 167 (244)
T 2brx_A 112 -------VEDFWEAW-----KAVQLKKIPVMGG--THP----------GHTTDAVAALLAEFLKADLLVVITNVDGVYTA 167 (244)
T ss_dssp -------BCSHHHHH-----HHHHTTCBCEECC--CST----------TCCHHHHHHHHHHHTTCSEEEEECSSSSCBSS
T ss_pred -------cCCHHHHH-----HHHhCCCEEEEcC--CCC----------CCCchHHHHHHHHHcCCCEEEEEeCCCccCCC
Confidence 01223232 2357889999998 321 12499999999999999999999999999999
Q ss_pred CCCCCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 316 DPNIHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
||+++|++++|+++||+|+.+++.. |+ .++++.|++++.+.++|++|.|+++|+ ..||+|.
T Consensus 168 dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~ 243 (244)
T 2brx_A 168 DPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 243 (244)
T ss_dssp CTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEEC
T ss_pred CCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEec
Confidence 9999999999999999999999654 55 899999999999999999999877663 4688875
|
| >2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-27 Score=239.81 Aligned_cols=216 Identities=22% Similarity=0.266 Sum_probs=161.6
Q ss_pred eEEEEecccccCC--HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~--~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
++|.||||+ +.+ .+.++++++.|........+|+|++.|...+.+++..
T Consensus 41 ~iVIKiGGs-l~~~~~~~l~~l~~~I~~l~~G~~vVlV~GGg~~~~~~~~~~---------------------------- 91 (276)
T 2ogx_A 41 LQVVKIGGR-VMDRGADAILPLVEELRKLLPEHRLLILTGAGVRARHVFSVG---------------------------- 91 (276)
T ss_dssp EEEEEECHH-HHTTTHHHHHHHHHHHHHHTTTCEEEEEECCTHHHHHHHHHH----------------------------
T ss_pred eEEEEEChh-hcCCCHHHHHHHHHHHHHHhCCCeEEEEECcHHHHHHHHhcc----------------------------
Confidence 799999999 888 6899999999987543334444444444433332210
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
.+.+. +....+.+...++.++..+++.++...|++++.+..
T Consensus 92 ~~~gl-------------------------~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~~-------------- 132 (276)
T 2ogx_A 92 LDLGL-------------------------PVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHPT-------------- 132 (276)
T ss_dssp HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHHH--------------
T ss_pred CcCCC-------------------------CHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccC--------------
Confidence 11221 234556666667899999998888788886532210
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCce-eecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAI-TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~-ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~ 318 (557)
..+.+. .+++.+.|||++||.+.+. ++.+ ..+.++++|++|+++|.+|+|+++++||||||||++||+
T Consensus 133 ---------~~~~i~-~lL~~g~IpVi~~~~~~~~-~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~ 201 (276)
T 2ogx_A 133 ---------VADQLA-IHLSATRAVVGSAFPPYHH-HEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPN 201 (276)
T ss_dssp ---------HHHHHH-HHHHHSSEEEEESSCTTGG-GCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTT
T ss_pred ---------hHHHHH-HHHhCCCEEEEcCCccccc-ccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCC
Confidence 112222 2456789999999977652 1221 233566799999999999999999999999999999999
Q ss_pred --CCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHH--hCCCCEEEecCCCC---------CCCCeeEecC
Q 008693 319 --IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAR--EGDIPVRVKNSYNP---------NAPGTLIRRS 378 (557)
Q Consensus 319 --~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~--~~~Ipv~I~n~~~p---------~~~GT~I~~~ 378 (557)
.+|++++|++++++|+.+++ |..+|||++..++. +.++|++|.|+++| +..||+|.+.
T Consensus 202 ~~~~~~a~~i~~i~~~e~~~~~--g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 272 (276)
T 2ogx_A 202 GPDRGQARFLPETSATDLAKSE--GPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTG 272 (276)
T ss_dssp STTGGGCCEESEEEHHHHHTSC--SCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECS
T ss_pred ccCCCCCeEcceeCHHHHHHHh--CcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccC
Confidence 89999999999999999987 88999999999988 66889999999988 5689999864
|
| >2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=6.2e-27 Score=229.48 Aligned_cols=202 Identities=21% Similarity=0.290 Sum_probs=154.5
Q ss_pred ceEEEEecccccCC-HHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~-~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+++|.||||+++.+ .+.++++++.|.... +.++|+|+|+ |..++.++...
T Consensus 1 ~~iViK~GGs~l~~~~~~~~~~~~~i~~l~~g~~vvlV~gg-G~~~~~~~~~~--------------------------- 52 (219)
T 2ij9_A 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAREYIKSA--------------------------- 52 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHHHHHHHH---------------------------
T ss_pred CeEEEEeChhhhCChHHHHHHHHHHHHHHcCCCEEEEEECc-chHhcchHHHH---------------------------
Confidence 36899999999999 899999999997642 3455666665 77777764322
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
++++. ++...|.+.+.++.+++.+++.+|+.. +. +
T Consensus 53 -~~~g~-------------------------~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~-------~----------- 87 (219)
T 2ij9_A 53 -RELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSA-AK-------K----------- 87 (219)
T ss_dssp -HHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTB-CS-------S-----------
T ss_pred -HHcCC-------------------------CccchHHHHHHHHHHHHHHHHHHHHHh-cC-------C-----------
Confidence 22222 345567777778899999998766543 10 0
Q ss_pred ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCC
Q 008693 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (557)
Q Consensus 239 a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~ 318 (557)
...+.+.+. .+++.+.|||++| |. . .|++|++|+.+|.+|+|+++++||||||||++||+
T Consensus 88 ---~~~~~~~i~-----~ll~~g~ipVi~~--g~------~----~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~ 147 (219)
T 2ij9_A 88 ---VPVDFMEAE-----ELSKLYRVVVMGG--TF------P----GHTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp ---CCSSHHHHH-----HHHTTCSEEEECC--CS------S----SSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred ---CcCCHHHHH-----HHHHCCCEEEEeC--CC------C----CCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCC
Confidence 112333332 2457899999998 31 1 23599999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHc-CC-----CcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeeEe
Q 008693 319 IHPHAKPVPYLTFDEAAELAYF-GA-----QVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR 376 (557)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~-Ga-----~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~ 376 (557)
.+|++++|+++||+|+.+++.. |+ .+.|+.|++++.+.++|++|.|+ +| +..||+|.
T Consensus 148 ~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred CCCCCeEeeeeCHHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9999999999999999999765 55 89999999999999999999998 66 34688773
|
| >2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-26 Score=231.44 Aligned_cols=215 Identities=21% Similarity=0.244 Sum_probs=151.7
Q ss_pred cceEEEEecccccCC-------HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHH
Q 008693 80 QLTCVMKFGGSSLAS-------AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~-------~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~ 152 (557)
++++|.||||+++.+ .+.++++++.|........+|+|++.|...+.+.
T Consensus 24 ~k~iVIKiGGs~l~~~~~~~~~~~~i~~~a~~i~~l~~g~~vVlVhGgG~~~~~~~------------------------ 79 (256)
T 2va1_A 24 KQRIVIKISGACLKQNDSSIIDFIKINDLAEQIEKISKKYIVSIVLGGGNIWRGSI------------------------ 79 (256)
T ss_dssp CSEEEEEECGGGGCSSTTCSSCHHHHHHHHHHHHHHTTTSEEEEEECCTTTCCHHH------------------------
T ss_pred cCEEEEEechhhccCCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEECCcHHhccch------------------------
Confidence 467999999999994 5789999998887433334555554466655432
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEE
Q 008693 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (557)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (557)
+..++.+. ...|....++..+++.++..+|++.|++++.+++.+.
T Consensus 80 ------~~~~g~~~-------------------------~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~---- 124 (256)
T 2va1_A 80 ------AKELDMDR-------------------------NLADNMGMMATIINGLALENALNHLNVNTIVLSAIKC---- 124 (256)
T ss_dssp ------HHHTTCCH-------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCC----
T ss_pred ------HHHcCCCC-------------------------CchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeec----
Confidence 11222221 1122333445588999989999999999988876542
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeC-CCc
Q 008693 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKD-VDG 311 (557)
Q Consensus 233 ~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TD-VdG 311 (557)
+.+.+.. .+ ..+ ..+++.+.|||++|+. |. .++++|++|+.+|.+|+|+++++||| |||
T Consensus 125 -~~~~~~~---~~-----~~~-~~lL~~g~IpVi~~~~------g~----~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdG 184 (256)
T 2va1_A 125 -DKLVHES---SA-----NNI-KKAIEKEQVMIFVAGT------GF----PYFTTDSCAAIRAAETESSIILMGKNGVDG 184 (256)
T ss_dssp -TTTCEEC---CH-----HHH-HHHHHTTCEEEEESTT------SS----SSCCHHHHHHHHHHHHTCSEEEEEESSCCS
T ss_pred -ccccchh---hH-----HHH-HHHHhCCcEEEEECCC------CC----CCCChhHHHHHHHHhCCCCEEEEeecccCe
Confidence 2322111 11 122 2346789999999832 32 24679999999999999999999999 999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I~ 376 (557)
||++||+.+|++++|++++|+|+.++ +.++|+++++..|.++|+|++|.|.++|+ ..||+|.
T Consensus 185 Vy~~dP~~~p~a~~i~~is~~e~~~~---~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 185 VYDSDPKINPNAQFYEHITFNMALTQ---NLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp BCSCC--------CBSEEEHHHHHHH---TCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred EEcCCCCCCCCCEEccEEcHHHHHHh---ccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999988 56788999999999999999999998874 4577775
|
| >2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-26 Score=237.74 Aligned_cols=237 Identities=16% Similarity=0.264 Sum_probs=172.7
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|.||||+++.+++.++++++.|.... ....+|||+++|...+.+++...
T Consensus 36 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~-------------------------- 89 (298)
T 2rd5_A 36 GKTIVVKYGGAAMTSPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLN-------------------------- 89 (298)
T ss_dssp TCEEEEEECTHHHHCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT--------------------------
T ss_pred CCEEEEEECchhhCChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcC--------------------------
Confidence 356999999999999999999998887642 23334445556666676654321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC-
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~- 235 (557)
... ++.+++ +..++...|.+ ++.|+. +. .+...|++.|++++.+++.+.+++++.+
T Consensus 90 -----~~~-----------~~~~g~---R~t~~~~l~~~~~~~~G~~-n~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 148 (298)
T 2rd5_A 90 -----IPA-----------EFRDGL---RVTDATTMEIVSMVLVGKV-NK-NLVSLINAAGATAVGLSGHDGRLLTARPV 148 (298)
T ss_dssp -----CCC-----------CEETTE---ECBCHHHHHHHHHHHHHTH-HH-HHHHHHHHTTSCEEEEETTGGGCEEEEEC
T ss_pred -----CCc-----------cccCCc---ccCCHHHHHHHHHHHhchH-HH-HHHHHHHhCCCCccccChHHCCEEEEEeC
Confidence 000 001111 12234444433 224754 55 4677899999999999988777777654
Q ss_pred -----CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 236 -----FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 236 -----~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
++. .++...+.+.+++ +++++.|||++|+ +.+ ..|+.++++ +|++|+.+|.+|+|++++|||||
T Consensus 149 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~v-~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTdV 218 (298)
T 2rd5_A 149 PNSAQLGFVGEVARVDPSVLRP-----LVDYGYIPVIASV-AAD-DSGQAYNIN---ADTVAGELAAALGAEKLILLTDV 218 (298)
T ss_dssp TTHHHHBSEEEEEEECGGGHHH-----HHHTTCEEEEESE-EEC-TTSCEEEEC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CccccCCcceEEEEECHHHHHH-----HHhCCCEEEEcCe-eEC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 332 2343444444432 3568899999997 777 478898886 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (557)
||||++||+ | +++|++++|+|+.+++..| ...|+|| ++..+.++|+| ++|.|+..|+ ..||+
T Consensus 219 dGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 295 (298)
T 2rd5_A 219 AGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTM 295 (298)
T ss_dssp SSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEE
T ss_pred cCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999999998 4 9999999999999998864 4679986 78889999999 9999987764 34777
Q ss_pred Ee
Q 008693 375 IR 376 (557)
Q Consensus 375 I~ 376 (557)
|.
T Consensus 296 i~ 297 (298)
T 2rd5_A 296 IT 297 (298)
T ss_dssp EE
T ss_pred Ee
Confidence 75
|
| >2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-26 Score=234.81 Aligned_cols=235 Identities=23% Similarity=0.282 Sum_probs=170.9
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|+||||+++.+++.++++++.|.... ....+|+|+++|..++.+++...
T Consensus 21 ~~~iViKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~-------------------------- 74 (282)
T 2bty_A 21 GKTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLG-------------------------- 74 (282)
T ss_dssp TCEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCChhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcC--------------------------
Confidence 367999999999999999999999887643 23335555557777777664321
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec--
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD-- 234 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~-- 234 (557)
.+. ++.+++ +..++...|.+ +..|+. +. .+...|++.|++++.+++.+.+++++.
T Consensus 75 -----~~~-----------~~~~g~---r~t~~~~l~~~~~~~~G~~-~~-~l~~~l~~~g~~a~~l~~~~~~~l~~~~~ 133 (282)
T 2bty_A 75 -----IEP-----------VFKNGH---RVTDEKTMEIVEMVLVGKI-NK-EIVMNLNLHGGRAVGICGKDSKLIVAEKE 133 (282)
T ss_dssp -----CCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH-HH-HHHHHHHTTTCCEEEEETTGGGSEEEEEC
T ss_pred -----CCc-----------cccCCc---ccCCHHHHHHHHHHHhhHH-HH-HHHHHHHhCCCCceecChhhCCEEEEecC
Confidence 000 000111 12234444432 225765 54 477889999999999998876666654
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+++. .++...+.+.+++ +++.+.|||++|| +.+ +.|+.++++ +|++|+.+|.+|+|+++++||||
T Consensus 134 ~~~~d~g~~g~v~~~~~~~i~~-----ll~~g~IpVi~~v-~~~-~~G~~~~~~---~D~~Aa~lA~~l~Ad~liilTDV 203 (282)
T 2bty_A 134 TKHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDV 203 (282)
T ss_dssp CTTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESS
T ss_pred CcccCCCcceEEEEecHHHHHH-----HHHCCCEEEECCC-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEEEEeCC
Confidence 3443 3444455554433 3568899999997 777 479888886 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchH--hHHHHHHhCCCC-EEEecCCCCC----------CCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHP--QSMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (557)
||||++ | ++|+++||+|+.+++..|. ..|.| +++..|.++|+| ++|.|+..|+ ..||+
T Consensus 204 dGvy~~-~------~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~ 276 (282)
T 2bty_A 204 DGVLKD-G------KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTM 276 (282)
T ss_dssp SSCEET-T------EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEE
T ss_pred CCeecC-c------hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceE
Confidence 999997 3 8999999999999987654 44655 589999999998 9999877764 47999
Q ss_pred EecC
Q 008693 375 IRRS 378 (557)
Q Consensus 375 I~~~ 378 (557)
|.+.
T Consensus 277 i~~~ 280 (282)
T 2bty_A 277 IKEL 280 (282)
T ss_dssp ECCC
T ss_pred EEeC
Confidence 9754
|
| >4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-26 Score=218.40 Aligned_cols=166 Identities=25% Similarity=0.369 Sum_probs=130.4
Q ss_pred CCCeeEecCCCCCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC-------ceeEEEeCC
Q 008693 370 APGTLIRRSRDMSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE-------VSLSLTLDP 442 (557)
Q Consensus 370 ~~GT~I~~~~~~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe-------~sIS~~I~~ 442 (557)
+.+++|....+|++..||||++.+|+++|++.+ |.+.|||++++|+.|+++|||||||+|+. ..++|+++.
T Consensus 10 ~s~~iv~e~~~mE~~vVtGIa~~~~~a~Iti~g--~~~~pG~aa~IF~~La~~~InVDmI~Qs~s~~~~~~~~~sftv~~ 87 (200)
T 4go7_X 10 HSSGLVPRGNHMEDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSR 87 (200)
T ss_dssp ----------CCCSCEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCCEECCCCC--CCEEEEEEEEEG
T ss_pred ccCceEeCCCccccCcEEEEEccCCEEEEEEec--CCCCccHHHHHHHHHHHhCcceEEEeeccccccccceEEEEecch
Confidence 456777777778888999999999999999984 88999999999999999999999998652 347899988
Q ss_pred chhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEe
Q 008693 443 SKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVN 521 (557)
Q Consensus 443 ~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~ 521 (557)
++..... +.+..+..++. ...+.+.+++++||+||. |...||+++|+|++|+++||||+||++ ||.+||++|+
T Consensus 88 ~d~~~~~---~~l~~~~~~~~-~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIst--SEi~IS~vV~ 161 (200)
T 4go7_X 88 DVGPAAV---EKLDSLRNEIG-FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLCR 161 (200)
T ss_dssp GGHHHHH---HHHHTTHHHHC-CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEE
T ss_pred hhHHHHH---HHHHHHHhhhc-eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEc--cCCEEEEEEe
Confidence 7654321 22333333333 356888899999999997 888999999999999999999999995 9999999999
Q ss_pred cccHHHHHHHHHHHhccCcccc
Q 008693 522 DDEAEQCVRALHETFFESDLAN 543 (557)
Q Consensus 522 ~~d~~kAv~~LH~~f~~~~~~~ 543 (557)
++|.++|+++||++|++....+
T Consensus 162 ~~d~~~Av~aLH~~F~L~~~~~ 183 (200)
T 4go7_X 162 DTELDKAVVALHEAFGLGGDEE 183 (200)
T ss_dssp GGGHHHHHHHHHHHHTC----C
T ss_pred HHHHHHHHHHHHHHhCCCCCce
Confidence 9999999999999999875433
|
| >3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=212.91 Aligned_cols=148 Identities=32% Similarity=0.488 Sum_probs=129.4
Q ss_pred CCcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHH
Q 008693 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVE 460 (557)
Q Consensus 381 ~~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~ 460 (557)
+++..|++|++++|+++|++.+.+|.+.+|+++++|+.|+++||+++|+++|+.+++|++++++ .+.++++
T Consensus 4 ~~~~~v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~s~~~Isf~v~~~~---------~~~~il~ 74 (157)
T 3mah_A 4 TEKDCIKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVATSEVGVSLTIDNDK---------NLPDIVR 74 (157)
T ss_dssp ---CCCCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEECCSSEEEEEESCCT---------THHHHHH
T ss_pred CCCCceEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEecCCEEEEEECChH---------HHHHHHH
Confidence 3456799999999999999999999999999999999999999999999999999999999765 1234556
Q ss_pred HHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 461 ELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 461 ~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
+++....+++.+++++|++||. |...||+++++|++|+ ||||.||+||+|+++|+++|+++|.++|+++||++|+..
T Consensus 75 ~l~~~~~v~~~~~~a~vsvvG~gm~~~~gv~a~~f~aL~--~Ini~~isqg~Se~~is~vv~~~d~~~a~~~Lh~~f~~~ 152 (157)
T 3mah_A 75 ALSDIGDVTVDKDMVIICIVGDMEWDNVGFEARIINALK--GVPVRMISYGGSNYNVSVLVKAEDKKKALIALSNKLFNS 152 (157)
T ss_dssp HHTTTEEEEEEEEEEEEEEEC------CCHHHHHHHTTT--TSCCSEEEECSSSSCEEEEEEGGGHHHHHHHHHHHHHC-
T ss_pred HHhccCeEEEeCCeEEEEEECCCcccCccHHHHHHHHhC--CCCeEEEeeCCCCCEEEEEEcHHHHHHHHHHHHHHHhcc
Confidence 6666678888999999999997 7889999999999999 999999999999999999999999999999999999976
|
| >2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-25 Score=224.42 Aligned_cols=214 Identities=17% Similarity=0.236 Sum_probs=152.0
Q ss_pred eEEEEecccccCC--HHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLAS--AERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 82 ~~V~KFGGsSv~~--~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
++|.||||+++.+ .+.++++++.|....+...+|+|++.|...+.+.+.+
T Consensus 38 ~iVIKlGGs~l~~~~~~~~~~la~~I~~l~~~~~vVlVhGGg~~~~~~~~~~---------------------------- 89 (270)
T 2ogx_B 38 ATVIKIGGQSVIDRGRAAVYPLVDEIVAARKNHKLLIGTGAGTRARHLYSIA---------------------------- 89 (270)
T ss_dssp EEEEEECTTTTGGGCHHHHHHHHHHHHHHTTTCEEEEEECCCHHHHHHHHHH----------------------------
T ss_pred eEEEEechHHhCCCCHHHHHHHHHHHHHHhcCCcEEEEECChHHHHHHHHHH----------------------------
Confidence 7999999999998 5899999999987533234444444444443322111
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHH--HHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSR--DYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~--d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
.+++.+ .... ....+.| ++..++...|.++|++. +|..++
T Consensus 90 ~~~g~~-------------------------~~~~~~~~~~a~G--~~~l~~~~~l~~~G~~~----------vt~~d~- 131 (270)
T 2ogx_B 90 AGLGLP-------------------------AGVLAQLGSSVAD--QNAAMLGQLLAKHGIPV----------VGGAGL- 131 (270)
T ss_dssp HHTTCC-------------------------HHHHHHHHHHHHH--HHHHHHHHHHGGGTCCB----------CCSSTT-
T ss_pred HhcCCC-------------------------hHHHHHHHHHHHH--HHHHHHHHHHHhcCCce----------ecHhhH-
Confidence 112221 1111 2234444 56667778888889872 222222
Q ss_pred CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCC---CcchhHHHHHHHHcCcCcEEEeeCCCcccc
Q 008693 238 NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLT 314 (557)
Q Consensus 238 ~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgR---gGSD~tAa~lA~~L~A~~l~i~TDVdGV~t 314 (557)
..+. .+++.+.|||++||.|.+. ....++.|+ +++|++|+.+|.+|+|+++++||||||||+
T Consensus 132 ---------~~i~-----~lL~~g~ipVi~g~~g~~~-~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~ 196 (270)
T 2ogx_B 132 ---------SAVP-----LSLAEVNAVVFSGMPPYKL-WMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYT 196 (270)
T ss_dssp ---------CHHH-----HHCTTCCEEEEECSCTTGG-GCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEES
T ss_pred ---------HHHH-----HHHhCCCEEEEeCCccccc-cccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccC
Confidence 2222 2457899999999987652 122223444 789999999999999999999999999999
Q ss_pred CCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHh--CCCCEEEecCCCCC---------CCCeeEec
Q 008693 315 CDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPARE--GDIPVRVKNSYNPN---------APGTLIRR 377 (557)
Q Consensus 315 aDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~--~~Ipv~I~n~~~p~---------~~GT~I~~ 377 (557)
+||+.+|++++|++++|+|+.+++..| +++|+.....+.. .++|++|.|+++|+ ..||+|.+
T Consensus 197 ~dP~~~~~a~~i~~i~~~e~~~~~~~g-~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 197 ANPKTSKDATFIPRISVDEMKAKGLHD-SILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp SCSSSCTTCCEESEEEHHHHHHTTCCC-TTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred CCCCCCCCCeEcceeCHHHHHHHhcCC-CcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 999999999999999999999998755 6889876666655 57899999998885 57999864
|
| >2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.4e-26 Score=228.83 Aligned_cols=215 Identities=18% Similarity=0.205 Sum_probs=152.8
Q ss_pred ceEEEEecccccC-----CHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLA-----SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDL 154 (557)
Q Consensus 81 ~~~V~KFGGsSv~-----~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~ 154 (557)
+++|.||||+++. +.+.++++++.|.... ..++|+|+|+ | ....+..
T Consensus 2 k~iViKlGGs~l~~~~~~~~~~~~~~~~~i~~l~~~~~vVlVhgG-g-~~~~~~~------------------------- 54 (251)
T 2ako_A 2 KRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSA-A-ISAGHTK------------------------- 54 (251)
T ss_dssp CEEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECC-H-HHHHHHH-------------------------
T ss_pred CEEEEEeCcceeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECC-H-HHHHHHH-------------------------
Confidence 4699999999999 8899999999988742 2344555543 2 3221111
Q ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec
Q 008693 155 HHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD 234 (557)
Q Consensus 155 ~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~ 234 (557)
++.+. ......+.+.+.|+....+++..+|+++|+++..+ .++.+
T Consensus 55 -------~g~~~----------------------~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i------~~~~~ 99 (251)
T 2ako_A 55 -------LDIDR----------------------KNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGK 99 (251)
T ss_dssp -------CCCCS----------------------SSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTG
T ss_pred -------hCCcc----------------------CCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEE------Eeccc
Confidence 11110 01122367888999999999999999999997632 34444
Q ss_pred CCCCceeeecchHHHHH-HHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 235 DFTNADILEATYPAVAK-RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 235 ~~~~a~i~~~~~~~v~~-~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+|.. ++ .++.. .....+++.+.|||++|+-+.. .++. .++++|++|+.+|.+|+|+++++||||||||
T Consensus 100 ~~~~-~~-----~~~~~~~~i~~ll~~g~ipVi~~~d~v~--~~~~---~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy 168 (251)
T 2ako_A 100 DFDS-RK-----ATKHAKNAIDMMINLGILPIINENDATA--IEEI---VFGDNDSLSAYATHFFDADLLVILSDIDGFY 168 (251)
T ss_dssp GGGC-HH-----HHHHHHHHHHHHHHTTCEEEEEECTTTC--CHHH---HBTTTHHHHHHHHHHTTCSEEEEEESSCSCB
T ss_pred hhcC-cc-----eEehHHHHHHHHHHCCCEEEEeCCCcee--ecce---eecCchHHHHHHHHhcCCCEEEEEeCCCcee
Confidence 4421 11 12211 2333456789999999753222 1222 4678999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHH--HHHHHHH-----cCCCcch--HhHHHHHHhCCCCEEEecCCCC
Q 008693 314 TCDPNIHPHAKPVPYLTFD--EAAELAY-----FGAQVLH--PQSMRPAREGDIPVRVKNSYNP 368 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~--Ea~eLa~-----~Ga~vlh--p~a~~~a~~~~Ipv~I~n~~~p 368 (557)
++||+++|++++|+++||+ |+.+++. +|...|+ ++++.+|.++|+|++|.|+++|
T Consensus 169 ~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~ 232 (251)
T 2ako_A 169 DKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDL 232 (251)
T ss_dssp SSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSC
T ss_pred eCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCCh
Confidence 9999999999999999999 9999976 6777665 4589999999999999998776
|
| >2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.6e-25 Score=231.82 Aligned_cols=238 Identities=19% Similarity=0.300 Sum_probs=173.9
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
++++|.||||+++.+++.++++++.|.... +.++|+|+|+ |...+.+++.
T Consensus 49 ~k~iVIKlGGs~l~~~~~~~~l~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~--------------------------- 100 (321)
T 2v5h_A 49 GRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGG-GPEINAWLGR--------------------------- 100 (321)
T ss_dssp TCEEEEEECTHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECC-HHHHHHHHHH---------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCEEEEEECC-HHHHHHHHHH---------------------------
Confidence 467999999999999988999998887642 3455556554 5555555432
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (557)
++.+. ++.+|+ +..++...|.+ ++.|+ ++.. +...|+.+|++++.+++.+.+++++.
T Consensus 101 ----~g~~~-----------~~~~g~---Rvt~~~~l~~~~~~~~G~-in~~-l~~~L~~~g~~a~gl~~~~a~~l~a~~ 160 (321)
T 2v5h_A 101 ----VGIEP-----------QFHNGL---RVTDADTMEVVEMVLVGR-VNKD-IVSRINTTGGRAVGFCGTDGRLVLARP 160 (321)
T ss_dssp ----TTCCC-----------CBSSSS---BCBCHHHHHHHHHHHHHT-HHHH-HHHHHHHHTCCEEEECTTGGGSEEEEE
T ss_pred ----cCCCc-----------cccCCc---ccCCHHHHHHHHHHHhCh-HHHH-HHHHHHhCCCCeeeeChhhccEEEeec
Confidence 11110 001111 12234555554 23574 4654 67789999999999998876666664
Q ss_pred ----CCCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+++. .++...+.+.+++ +++.|.|||+++ ++.+ ..|+..+++ +|++|+.+|.+|+|++++|+|||
T Consensus 161 ~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~l~Ad~LiilTDV 230 (321)
T 2v5h_A 161 HDQEGIGFVGEVNSVNSEVIEP-----LLERGYIPVISS-VAAD-ENGQSFNIN---ADTVAGEIAAALNAEKLILLTDT 230 (321)
T ss_dssp CSSCSSBSBEEEEEECGGGTHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEEESS
T ss_pred CCCccccccceeEEecHHHHHH-----HHHCCCeEEEeC-ceEC-CCCCEEEeC---HHHHHHHHHHHcCCCEEEEeeCC
Confidence 4554 2344444443332 357899999996 5777 478776554 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~ 374 (557)
||||++||+ ++++|++|+++|+.+++..| ...|+|| ++..|.++|+| ++|.|+..|+ ..||+
T Consensus 231 dGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~ 307 (321)
T 2v5h_A 231 RGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTM 307 (321)
T ss_dssp SSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEE
T ss_pred CceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceE
Confidence 999999998 69999999999999998864 6789985 88999999999 9999977664 56999
Q ss_pred EecC
Q 008693 375 IRRS 378 (557)
Q Consensus 375 I~~~ 378 (557)
|.+.
T Consensus 308 I~~~ 311 (321)
T 2v5h_A 308 IVGS 311 (321)
T ss_dssp EECC
T ss_pred EECC
Confidence 9765
|
| >3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid} | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-25 Score=222.68 Aligned_cols=159 Identities=17% Similarity=0.164 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCC--Ccee
Q 008693 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRT--CAIT 280 (557)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~--G~~t 280 (557)
.+|+. +.++|+++|++++.+++.+.++++. +++...+...+.. +++++.|||++||++.+ .+ |.++
T Consensus 89 ~ln~~-l~~~L~~~G~~a~~l~g~~~~~~~~-----g~v~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~~~g~~~ 156 (269)
T 3ll9_A 89 KLNSH-VCDALLAEGIPAVSMQPSAFIRAHA-----GRISHADISLIRS-----YLEEGMVPVVYGDVVLD-SDRRLKFS 156 (269)
T ss_dssp HHHHH-HHHHHHHTTCCEEECCGGGTEEEET-----TEEEEECCHHHHH-----HHHTTCEEEEECEEEEB-SCTTTSEE
T ss_pred HHHHH-HHHHHHHCCCcEEEEcchHcCeEec-----CeeeeecHHHHHH-----HHHCCCEEEECCCEEec-ccccCcce
Confidence 67885 6778999999999999999877652 4555555554443 35689999999999987 47 8888
Q ss_pred ecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHH-----cCCCcchHh--HHHHH
Q 008693 281 TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY-----FGAQVLHPQ--SMRPA 353 (557)
Q Consensus 281 tlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~-----~Ga~vlhp~--a~~~a 353 (557)
+++ +|++|+++|.+|+|+++++||||||||++||+++|++++|++++++|+.++.. .+...|.|| +...+
T Consensus 157 ~~~---~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a 233 (269)
T 3ll9_A 157 VIS---GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLL 233 (269)
T ss_dssp EEC---HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHH
T ss_pred ecc---hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHH
Confidence 886 99999999999999999999999999999999999999999999999987743 344567776 56666
Q ss_pred HhCCCCEEEecCCCCC---------CC-CeeEe
Q 008693 354 REGDIPVRVKNSYNPN---------AP-GTLIR 376 (557)
Q Consensus 354 ~~~~Ipv~I~n~~~p~---------~~-GT~I~ 376 (557)
.++|+|++|.|...|+ .. ||+|.
T Consensus 234 ~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp HHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred HhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 7899999999987774 34 88886
|
| >3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-26 Score=229.95 Aligned_cols=222 Identities=13% Similarity=0.086 Sum_probs=156.0
Q ss_pred ceEEEEecccccCCHH--------HHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 81 LTCVMKFGGSSLASAE--------RMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~--------~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
+++|.||||+++.+++ .++++++.|.... +.+++||||++|...+.+++...
T Consensus 24 ~~iVIKlGGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~~~~~l~~~~------------------ 85 (286)
T 3d40_A 24 DFLAIKVGGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAFGHGAIRDHD------------------ 85 (286)
T ss_dssp SEEEEEECGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC---------------------------
T ss_pred CEEEEEeCchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHcC------------------
Confidence 4799999999999864 8999998888653 22257777999988877654211
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
.+ .... +...+.|+......+..+|+++|+++..+.+.+..+
T Consensus 86 -------------~~---------------------~~~~----~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~ 127 (286)
T 3d40_A 86 -------------ST---------------------HAFS----LAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCT 127 (286)
T ss_dssp -------------------------------------CCT----THHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEE
T ss_pred -------------CC---------------------cccc----hhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCc
Confidence 00 0011 112333434445578888999999999999888754
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHH-cCcCcEEEeeCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA-LGLQEIQVWKDV 309 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~-L~A~~l~i~TDV 309 (557)
|.+ + +.......++. +++.+.|||++||++.+ .+|+. .++++|++|+++|.+ |+|++|+|||||
T Consensus 128 -t~d--g---~~~~~~~~i~~-----lL~~g~IpVi~gd~~~~-~~g~~---~~~~~D~~Aa~lA~~~l~Ad~LiilTDV 192 (286)
T 3d40_A 128 -LRN--G---IPQLRSEVLRD-----VLDHGALPVLAGDALFD-EHGKL---WAFSSDRVPEVLLPMVEGRLRVVTLTDV 192 (286)
T ss_dssp -EET--T---EEEECCSHHHH-----HHHTTCEEEEECEEEEB-TTSCE---EEECGGGHHHHTTTTCCSCEEEEEEESS
T ss_pred -ccC--C---eEEehHHHHHH-----HHHCcCEEEEcCCeEEc-CCCCE---EeeCHHHHHHHHHHhhCCCCEEEEecCC
Confidence 433 2 33333333332 35688999999988887 46775 455699999999999 999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchH--hHHHHHHhCCCCEEEecCCCCCCCCeeEe
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHP--QSMRPAREGDIPVRVKNSYNPNAPGTLIR 376 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp--~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~ 376 (557)
||||++||+ ++++|++|+++|+.+|.. ++...|+| +++..|.++|+|++|.|+++|+....+++
T Consensus 193 dGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t 266 (286)
T 3d40_A 193 DGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTA 266 (286)
T ss_dssp SSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGS
T ss_pred CeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhc
Confidence 999999999 899999999988777632 46689999 58899999999999999988865544444
|
| >2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-24 Score=221.26 Aligned_cols=235 Identities=20% Similarity=0.309 Sum_probs=171.7
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
++++|.||||+++.+++.++.+++.|.... +.++|+|+|+ |...+.+++..
T Consensus 26 ~k~iVIKlGGs~l~~~~~~~~~~~~i~~l~~~G~~vVlVhGg-G~~i~~~~~~~-------------------------- 78 (300)
T 2buf_A 26 GKTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGG-GPQIGDLLKRL-------------------------- 78 (300)
T ss_dssp TCEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECC-CHHHHHHHHHT--------------------------
T ss_pred CCeEEEEECchhhCCchHHHHHHHHHHHHHHCCCeEEEEECC-cHHHHHHHHHc--------------------------
Confidence 467999999999999988999998887642 3455566654 65555554321
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH--HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL--VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i--~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (557)
+.+. ++.+|+ +..++...|.+ ++.|+. ...+...|+.+|++++.+++.+.+++++.+
T Consensus 79 -----g~~~-----------~~~~g~---rvt~~~~l~~~~~~~~G~~--~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~ 137 (300)
T 2buf_A 79 -----SIES-----------HFIDGM---RVTDAATMDVVEMVLGGQV--NKDIVNLINRHGGSAIGLTGKDAELIRAKK 137 (300)
T ss_dssp -----TCCC-----------CBSSSS---BCBCHHHHHHHHHHHHHTH--HHHHHHHHHHTTCCEEEEEETGGGCEEEEE
T ss_pred -----CCCc-----------cccCCe---ecCCHHHHHHHHHHHHHHH--HHHHHHHHHhCCCCEEEecCCCCCeeeeee
Confidence 1110 001111 11234555554 335765 556788899999999999988777776542
Q ss_pred -----------------CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHH
Q 008693 236 -----------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKA 297 (557)
Q Consensus 236 -----------------~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~ 297 (557)
++. .++...+...++ .+++.+.|||+++ ++.+ +.|+..+++ +|++|+.+|.+
T Consensus 138 ~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~-----~lL~~g~IpVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~ 207 (300)
T 2buf_A 138 LTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN-----MLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEA 207 (300)
T ss_dssp CCCCCC--------CCCCBSBEEEEEECHHHHH-----HHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHH
T ss_pred ccccccchhhcccccccCCcceeEEEECHHHHH-----HHHHCCCEEEEcC-ceeC-CCCCEEEEC---HHHHHHHHHHH
Confidence 322 233344544333 2457899999996 5777 478888886 99999999999
Q ss_pred cCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCC---
Q 008693 298 LGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPN--- 369 (557)
Q Consensus 298 L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~--- 369 (557)
|+|+.+++||||||||++ ++++|++++++|+.+++..| ...|+| +++..+.++|+| ++|.|+..|+
T Consensus 208 l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll 281 (300)
T 2buf_A 208 LKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVL 281 (300)
T ss_dssp HTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHH
T ss_pred cCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHH
Confidence 999999999999999997 38999999999999998864 578999 588899999999 9999877664
Q ss_pred -------CCCeeEecC
Q 008693 370 -------APGTLIRRS 378 (557)
Q Consensus 370 -------~~GT~I~~~ 378 (557)
..||+|.+.
T Consensus 282 ~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 282 LEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHSSTTCCSEEEECC
T ss_pred HHHhcCCCCceEEEeC
Confidence 479999764
|
| >3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-24 Score=217.71 Aligned_cols=227 Identities=17% Similarity=0.228 Sum_probs=165.8
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+++|.||||+++.+. ++++++.|... .+.++|+|+|++..++..|.+++
T Consensus 37 k~iVIKiGGs~l~~~--~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg--------------------------- 87 (279)
T 3l86_A 37 DIIVIKIGGVASQQL--SGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQ--------------------------- 87 (279)
T ss_dssp CEEEEEECTTGGGSC--CHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTT---------------------------
T ss_pred ceEEEEEChHHHHhH--HHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcC---------------------------
Confidence 479999999999873 56666666553 24566777776545655544332
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~--s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
.++ ++.+|+++ .+++..+.+- .+| .++. .+.+.|++.|+++..+++.+.+++|.+++
T Consensus 88 -----~~~-----------~~~~G~Rv---td~~~l~~v~~~l~G-~ln~-~i~~~L~~~G~~a~~l~g~dg~llta~~~ 146 (279)
T 3l86_A 88 -----VPV-----------KKINGLRV---TSKDDMVLVSHALLD-LVGK-NLQEKLRQAGVSCQQLKSDIKHVVAADYL 146 (279)
T ss_dssp -----CCC-----------CEETTEEC---BCHHHHHHHHHHHHH-TTHH-HHHHHHHHTTCCEEECSGGGGGTEEEEES
T ss_pred -----CCC-----------ccCCCccc---CcHHHHHHHHHHHHH-HHHH-HHHHHHHhCCCCEEEEecCcCCEEEeecc
Confidence 110 01112211 1233333331 123 2334 46678999999999999999989998744
Q ss_pred -----CC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 237 -----TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 237 -----~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
++ +++...+.+.+++ +++.+.|||++| ++.+ .+|+.++++ +|++|+.+|.+|+|++++||||||
T Consensus 147 ~~~d~g~vG~i~~v~~~~i~~-----lL~~g~IPVi~~-v~~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTDVd 216 (279)
T 3l86_A 147 DKDTYGYVGDVTHINKRVIEE-----FLENRQIPILAS-LGYS-KEGDMLNIN---ADYLATAVAVALAADKLILMTNVK 216 (279)
T ss_dssp CHHHHBSBEEEEEECHHHHHH-----HHHTTCEEEEES-EEEC-TTSCEEECC---HHHHHHHHHHHTTCSEEEEECSSS
T ss_pred CccccCcccccchhhHHHHHH-----HHhCCcEEEECC-cEEC-CCCCEeecC---HHHHHHHHHHHcCCCEEEEEeCCC
Confidence 33 5666666655543 356889999999 8888 479998886 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcC--CCcchH--hHHHHHHhCCCC-EEEecCCCCCCCCeeEec
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFG--AQVLHP--QSMRPAREGDIP-VRVKNSYNPNAPGTLIRR 377 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~G--a~vlhp--~a~~~a~~~~Ip-v~I~n~~~p~~~GT~I~~ 377 (557)
|||+ ++++|++++++|+.+++..| ...|.| +++..|.++|+| ++|.|+|.+ ||+|..
T Consensus 217 GV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~---GT~i~~ 278 (279)
T 3l86_A 217 GVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT---GTLITA 278 (279)
T ss_dssp SCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC---SEEEEC
T ss_pred cccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC---CeEEec
Confidence 9994 47899999999999998754 467777 588899999999 999999975 999975
|
| >1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1 | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-24 Score=219.42 Aligned_cols=237 Identities=16% Similarity=0.121 Sum_probs=161.4
Q ss_pred ceEEEEecccccC--CH--------HHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 81 LTCVMKFGGSSLA--SA--------ERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 81 ~~~V~KFGGsSv~--~~--------~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
+++|+||||+++. +. +.++++++.|.... +.++|+|+|++..+++.|.+.....
T Consensus 3 k~iViK~GGsal~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~-------------- 68 (314)
T 1e19_A 3 KRVVIALGGNALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQ-------------- 68 (314)
T ss_dssp CEEEEECCGGGTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHH--------------
T ss_pred CEEEEEEChHHhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCcc--------------
Confidence 5799999999999 54 58888888887642 4467778877777777776542210
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH--hhch---HHHHHHHHHHHHHcCCce---
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV--SFGE---CMSTRIFAAYLNKIGVKA--- 220 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~--s~GE---~lsa~ll~~~L~~~Gi~a--- 220 (557)
++ + .+...+ .+.+. ..|+ .+ ..++...|++.|+++
T Consensus 69 -----------------------------~~-~---~~~~~~---l~~~~a~~~G~i~~~l-~~~l~~~l~~~gi~a~~~ 111 (314)
T 1e19_A 69 -----------------------------AT-Y---GIPAQP---MDVAGAMSQGWIGYMI-QQALKNELRKRGMEKKVV 111 (314)
T ss_dssp -----------------------------HH-H---CCCCCC---HHHHHHHHHHHHHHHH-HHHHHHHHHHTTCCCCEE
T ss_pred -----------------------------cc-C---CCChhH---HHHHHHHHhhHHHHHH-HHHHHHHHHHcCCchhhh
Confidence 00 0 011112 22332 2243 55 556778899999987
Q ss_pred -----EEecccee----------EEEEecC-------C------------CCc-----eeeecchHHHHHHHhhchhcCC
Q 008693 221 -----RQYDAFDI----------GFITTDD-------F------------TNA-----DILEATYPAVAKRLHGDWITDL 261 (557)
Q Consensus 221 -----~~l~~~~~----------~iit~~~-------~------------~~a-----~i~~~~~~~v~~~l~~~ll~~~ 261 (557)
+.+++.|. ++++.++ + .+. .+...+...++ .+++.+
T Consensus 112 ~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i~-----~lL~~g 186 (314)
T 1e19_A 112 TIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIK-----KLVERG 186 (314)
T ss_dssp EBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHH-----HHHHTT
T ss_pred hhheeeeecccchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHHH-----HHHHCC
Confidence 56666652 2332110 1 111 02223333332 346789
Q ss_pred ceEEEcCCCcccC-CCCceeecCC---CcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHH
Q 008693 262 AIPIVTGFLGKAW-RTCAITTLGR---GGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAEL 337 (557)
Q Consensus 262 ~vpVv~Gfig~~~-~~G~~ttlgR---gGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eL 337 (557)
.|||++||.|.+. .+... ++|+ +++|++|+.+|.+|+|+++++||||||||++|| .|++++|++++++|+.++
T Consensus 187 ~IpV~~Gg~giPi~~~~d~-~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~~ 263 (314)
T 1e19_A 187 VIVIASGGGGVPVILEDGE-IKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKY 263 (314)
T ss_dssp CEEECSGGGCEEEEEETTE-EEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHH
T ss_pred CEEEEeCCCccCeEECCCC-cceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHHH
Confidence 9999998755431 01122 4564 889999999999999999999999999999999 489999999999999999
Q ss_pred HHcCC---CcchHh---HHHHHHhCCCCEEEec------CCCCCCCCeeEec
Q 008693 338 AYFGA---QVLHPQ---SMRPAREGDIPVRVKN------SYNPNAPGTLIRR 377 (557)
Q Consensus 338 a~~Ga---~vlhp~---a~~~a~~~~Ipv~I~n------~~~p~~~GT~I~~ 377 (557)
+..|. ..|+|| |++.+.+.++|++|.| .++. ..||+|.+
T Consensus 264 ~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 264 YEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp HHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTT-SSSEEEEC
T ss_pred HhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecHHHHHHHHcC-CCCeEEcC
Confidence 88654 678998 6777888999999987 3333 47999863
|
| >3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.3e-23 Score=198.45 Aligned_cols=152 Identities=26% Similarity=0.375 Sum_probs=129.6
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc--C-----ceeEEEeCCchhhhHHHHHHH
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--E-----VSLSLTLDPSKLWSRELIQQE 454 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS--e-----~sIS~~I~~~~~~~~~~~~~~ 454 (557)
++..|++|+.++|+++|++.+ |.+.+|+++++|+.|+++||+|+||+|+ + .+++|+++.++.... .+.
T Consensus 3 e~~~V~gIa~~~~~~~Iti~~--~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~~g~~~isftv~~~~~~~a---~~~ 77 (181)
T 3s1t_A 3 EDPILTGVAHDRSEAKVTIVG--LPDIPGYAAKVFRAVADADVNIDMVLQNVSKVEDGKTDITFTCSRDVGPAA---VEK 77 (181)
T ss_dssp -CCEEEEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCCEEECCCCTTTCEEEEEEEEETTTHHHH---HHH
T ss_pred CCCcEEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCcEEEEEecCCcccCCccEEEEEEehhHHHHH---HHH
Confidence 346799999999999999995 8899999999999999999999999853 3 479999998875421 223
Q ss_pred HHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008693 455 LDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 455 l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH 533 (557)
++.+..++ ....+++.+++++|++||. |...||+++++|++|+++||||.||++ |+.+||++|+++|.++|+++||
T Consensus 78 L~~~~~el-~~~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~Ist--Sei~Is~vV~~~d~~~Av~aLH 154 (181)
T 3s1t_A 78 LDSLRNEI-GFSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELIST--SEIRISVLCRDTELDKAVVALH 154 (181)
T ss_dssp HHHTHHHH-CCSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE--ETTEEEEEEEGGGHHHHHHHHH
T ss_pred HHHHHHhc-CcceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEc--CCCEEEEEEeHHHHHHHHHHHH
Confidence 44443444 2467888899999999997 788999999999999999999999995 8999999999999999999999
Q ss_pred HHhccCcc
Q 008693 534 ETFFESDL 541 (557)
Q Consensus 534 ~~f~~~~~ 541 (557)
++|+....
T Consensus 155 ~~f~l~~~ 162 (181)
T 3s1t_A 155 EAFGLGGD 162 (181)
T ss_dssp HHHTCCC-
T ss_pred HHHcCCCC
Confidence 99998753
|
| >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-23 Score=193.47 Aligned_cols=148 Identities=24% Similarity=0.404 Sum_probs=127.7
Q ss_pred ceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-------CceeEEEeCCchhhhHHHHHHHHH
Q 008693 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQELD 456 (557)
Q Consensus 384 ~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-------e~sIS~~I~~~~~~~~~~~~~~l~ 456 (557)
..|++|+.++|+++|++.+ +.+.||+++++|+.|+++||+|+|++++ +.+++|+++.++.... .+.|+
T Consensus 5 ~~v~gIa~~~~~a~Itv~g--~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a---~~~L~ 79 (167)
T 2dt9_A 5 KAVTGVALDLDHAQIGLIG--IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEA---LEALE 79 (167)
T ss_dssp CCEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHH---HHHHH
T ss_pred CceeEEEEeCCEEEEEEec--CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHH---HHHHH
Confidence 3699999999999999996 6788999999999999999999999877 5689999988765322 23455
Q ss_pred HHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 457 HVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 457 ~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
.+..++. + .+.+.+++++|++||. |...||+++++|++|+++||||+||++ |+.+|+++|+++|.++|+++||++
T Consensus 80 ~~~~~~~-~-~v~~~~~~a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is~--Se~~is~vv~~~d~~~Av~~Lh~~ 155 (167)
T 2dt9_A 80 PVLAEIG-G-EAILRPDIAKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIAT--SEVRISVIIPAEYAEAALRAVHQA 155 (167)
T ss_dssp HHHHHHC-C-EEEEECSEEEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHhC-C-cEEEeCCEEEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEEc--cCCEEEEEEeHHHHHHHHHHHHHH
Confidence 5555565 3 7888899999999997 888999999999999999999999985 899999999999999999999999
Q ss_pred hccCc
Q 008693 536 FFESD 540 (557)
Q Consensus 536 f~~~~ 540 (557)
|+.+.
T Consensus 156 f~~~~ 160 (167)
T 2dt9_A 156 FELDK 160 (167)
T ss_dssp TC---
T ss_pred HcCCc
Confidence 99763
|
| >3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-23 Score=205.82 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=145.5
Q ss_pred CcceEEEEecccccCCH--------HHHHHHHHHHHcCCCCccE-EEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHH
Q 008693 79 KQLTCVMKFGGSSLASA--------ERMREVAELILSFPNERPV-IVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELS 149 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~--------~~~~~va~iI~~~~~~~~v-vVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~ 149 (557)
+|+++|.||||+++.++ +.++++++.|.. +.++| +|+++ |...+.+++.
T Consensus 2 ~~k~iViKiGG~~l~~~~~~~~l~~~~l~~l~~~i~~--G~~vv~lVhGG-G~~~~~~~~~------------------- 59 (249)
T 3ll5_A 2 PFTMMILKIGGSVITDKSAYRTARTYAIRSIVKVLSG--IEDLVCVVHGG-GSFGHIKAME------------------- 59 (249)
T ss_dssp --CCEEEEECHHHHBCTTSTTCBCHHHHHHHHHHHHT--CTTEEEEEECC-GGGTHHHHHH-------------------
T ss_pred CceEEEEEECccEEecCcccccchHHHHHHHHHHHhc--CCceEEEEECc-cHHHHHHHHH-------------------
Confidence 47889999999999986 489999999986 55666 67666 6555554321
Q ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeE
Q 008693 150 FVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIG 229 (557)
Q Consensus 150 ~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ 229 (557)
++.++.... -+ -. ..+..++.++ .+|+.++ .+|+++|+++..+++.+.+
T Consensus 60 ------------~gi~~~~~~--~d-----~~--------gl~~t~~~~~---~ln~~~v-~~l~~~G~~a~~l~~~~~~ 108 (249)
T 3ll5_A 60 ------------FGLPGPKNP--RS-----SI--------GYSIVHRDME---NLDLMVI-DAMIEMGMRPISVPISALR 108 (249)
T ss_dssp ------------HTCSEECCH--HH-----HH--------HHHHHHHHHH---HHHHHHH-HHHHHTTCCEEECCGGGSC
T ss_pred ------------hCCCcCCCc--cc-----cc--------cHHHHHHHHH---HHHHHHH-HHHHHCCCcEEEEcHHHcc
Confidence 111110000 00 00 0112222222 7888877 7899999999999998864
Q ss_pred EEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 230 FITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 230 iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+ .+++ +...+. .+++++.|||++|+++.+ .+|..++++ +|++|+.+|.+|+|+++++||||
T Consensus 109 ~-------~g~v---~~~~i~-----~ll~~g~ipVi~~~~~~~-~~~~~~~~~---~D~~Aa~lA~~l~Ad~li~ltdv 169 (249)
T 3ll5_A 109 Y-------DGRF---DYTPLI-----RYIDAGFVPVSYGDVYIK-DEHSYGIYS---GDDIMADMAELLKPDVAVFLTDV 169 (249)
T ss_dssp B-------SSSB---CCHHHH-----HHHHTTCEEEEECEEEEE-ETTEEEEEC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred c-------ccEE---cHHHHH-----HHHHCCCEEEECCCEEEc-CCCceeeec---HHHHHHHHHHhcCCCEEEEEeCC
Confidence 3 1233 333332 235789999999988766 356665554 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHHHHHHH--HcCCCcchHh--HHHHH-HhCCCCEEEecCCCC
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDEAAELA--YFGAQVLHPQ--SMRPA-REGDIPVRVKNSYNP 368 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~Ea~eLa--~~Ga~vlhp~--a~~~a-~~~~Ipv~I~n~~~p 368 (557)
||||++||+.+|+++++++++ +++..+. .++...|.|| +...+ .++|++++|.|..+|
T Consensus 170 dGv~~~dp~~~~~a~~i~~i~-~~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~ 232 (249)
T 3ll5_A 170 DGIYSKDPKRNPDAVLLRDID-TNITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHP 232 (249)
T ss_dssp SSCBSSCTTTCTTCCBCCEEC-CCC-------------HHHHHHHHHHHTTCTTCEEEEETTSG
T ss_pred CccCCCCCCCCCCcEEHHHHH-HHHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCCh
Confidence 999999999999999999995 3332221 2345677887 44444 889999999987665
|
| >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=99.87 E-value=5.7e-22 Score=186.40 Aligned_cols=149 Identities=21% Similarity=0.362 Sum_probs=125.4
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-----CceeEEEeCCchhhhHHHHHHHHH
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-----EVSLSLTLDPSKLWSRELIQQELD 456 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-----e~sIS~~I~~~~~~~~~~~~~~l~ 456 (557)
++..|+||+.++|+++|++.+ |.+.||+++++|+.|+++||+|++++++ +.+++|+++.++.... .+.++
T Consensus 12 ~~~~V~gIa~~~~~~~i~v~~--~~~~~G~~~~if~~La~~~Invd~i~~s~~~~g~~~isf~v~~~~~~~a---~~~l~ 86 (167)
T 2re1_A 12 ERAAVTGIAFDKNQARINVRG--VPDKPGVAYQILGAVADANIEVDMIIQNVGSEGTTDFSFTVPRGDYKQT---LEILS 86 (167)
T ss_dssp ---CCCEEEEECCCEEEEEEE--EECCTTHHHHHHHHHHTTTCCCCCEEEC----CEEEEEEEECGGGHHHH---HHHHH
T ss_pred cCCCeEEEEecCCEEEEEEec--CCCCcCHHHHHHHHHHHcCCeEEEEEcCCCCCCeeEEEEEEechHHHHH---HHHHH
Confidence 345799999999999999997 8899999999999999999999999887 7789999998764321 12233
Q ss_pred HHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 457 HVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 457 ~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
.+..++. ...+...+++++|+++|. |...||+++++|++|+++||||.++++ |+.+++++|+++|.++|+++||++
T Consensus 87 ~~~~~l~-~~~i~~~~~~a~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~ist--se~~is~vv~~~d~~~av~~Lh~~ 163 (167)
T 2re1_A 87 ERQDSIG-AASIDGDDTVCKVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIST--SEIKVSVLIDEKYMELATRVLHKA 163 (167)
T ss_dssp HSSTTTT-CSEEEEESSEEEEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEEE--CSSEEEEEEEGGGHHHHHHHHHHH
T ss_pred HHHHHcC-CceEEecCCEEEEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEEc--ccCEEEEEEeHHHHHHHHHHHHHH
Confidence 2222233 345777889999999997 888999999999999999999999984 999999999999999999999999
Q ss_pred hcc
Q 008693 536 FFE 538 (557)
Q Consensus 536 f~~ 538 (557)
|+.
T Consensus 164 f~l 166 (167)
T 2re1_A 164 FNL 166 (167)
T ss_dssp TTC
T ss_pred hcC
Confidence 985
|
| >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=6.1e-22 Score=188.14 Aligned_cols=149 Identities=24% Similarity=0.362 Sum_probs=124.6
Q ss_pred cceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc-------CceeEEEeCCchhhhHHHHHHHH
Q 008693 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS-------EVSLSLTLDPSKLWSRELIQQEL 455 (557)
Q Consensus 383 ~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS-------e~sIS~~I~~~~~~~~~~~~~~l 455 (557)
+..|+||+.++|+++|++.+ +.+.||+++++|+.|+++||+|++++++ +.+++|+++.++.... .+.+
T Consensus 3 ~~~V~gIa~~~~~~~Itv~~--~~~~~G~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a---~~~l 77 (178)
T 2dtj_A 3 EAVLTGVATDKSEAKVTVLG--ISDKPGEAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRA---MEIL 77 (178)
T ss_dssp -CEEEEEEEECSEEEEEEEE--EECSTTHHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHH---HHHH
T ss_pred CCcEEEEEecCCEEEEEEec--CCCCccHHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHH---HHHH
Confidence 34699999999999999985 5788999999999999999999999876 6779999987654221 1122
Q ss_pred HHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHH
Q 008693 456 DHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHE 534 (557)
Q Consensus 456 ~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~ 534 (557)
+++..++. ...++..+++++|++||. |...||+++|+|++|+++||||.||+ +|+.+|+|+|+++|.++|+++||+
T Consensus 78 ~~~~~~~~-~~~v~~~~~~a~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~is--tSe~~Is~vV~~~d~~~Av~~Lh~ 154 (178)
T 2dtj_A 78 KKLQVQGN-WTNVLYDDQVGKVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIS--TSEIRISVLIREDDLDAAARALHE 154 (178)
T ss_dssp HTTTTTTT-CSEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEE--EETTEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHhcC-CCeEEEeCCeEEEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEE--cCCCeEEEEEeHHHHHHHHHHHHH
Confidence 22222222 345788899999999997 88899999999999999999999998 489999999999999999999999
Q ss_pred HhccC
Q 008693 535 TFFES 539 (557)
Q Consensus 535 ~f~~~ 539 (557)
+|+.+
T Consensus 155 ~F~l~ 159 (178)
T 2dtj_A 155 QFQLG 159 (178)
T ss_dssp HHTCC
T ss_pred HHccC
Confidence 99975
|
| >3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=6.9e-21 Score=205.99 Aligned_cols=234 Identities=18% Similarity=0.132 Sum_probs=165.4
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
++++|.||||+++.+++ ++++++.|.... ....+|+|+++|..++.+++...
T Consensus 43 ~~~iViK~GG~~l~~~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~-------------------------- 95 (456)
T 3d2m_A 43 GTTLVAGIDGRLLEGGT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQG-------------------------- 95 (456)
T ss_dssp TCEEEEEECGGGGTSTH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTT--------------------------
T ss_pred CCEEEEEEChHHhcCch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCC--------------------------
Confidence 46799999999999876 788888887642 23345556666766665543211
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCce----EEeccceeEEEEe
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKA----RQYDAFDIGFITT 233 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a----~~l~~~~~~iit~ 233 (557)
... ++.+|+ +..++...+.+ .+.| .++..+ .+.|+ +|+++ +.+++.+.++++.
T Consensus 96 -----~~~-----------~~~~g~---r~t~~~~l~~~~~~~G-~~~~~l-~~~l~-~g~~~~~~~~~l~~~~~~~~~~ 153 (456)
T 3d2m_A 96 -----RTP-----------HYCRGL---RVTDETSLGQAQQFAG-TVRSRF-EAALC-GSVSGFARAPSVPLVSGNFLTA 153 (456)
T ss_dssp -----CCC-----------CCGGGC---CCBCHHHHHHHHHHHH-HHHHHH-HHHHH-TC--------CCCEECCSCEEE
T ss_pred -----CCC-----------EeeCCe---ecCCHHHHHHHHHHHh-HHHHHH-HHHHh-cccccCCCccceeeccCcEEEE
Confidence 100 011121 12245555655 3346 666655 55788 99998 8888888778876
Q ss_pred cCC--------CC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEE
Q 008693 234 DDF--------TN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQ 304 (557)
Q Consensus 234 ~~~--------~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~ 304 (557)
... +. .++...+...+.+ +++.|.|||++++ +.+ .+|+.++++ +|++|+.+|.+|+|+.++
T Consensus 154 ~~~~~~~~~d~g~~g~v~~v~~~~i~~-----lL~~g~ipIi~~~-~~~-~~g~~~~~~---~D~~Aa~lA~~l~Ad~li 223 (456)
T 3d2m_A 154 RPIGVIDGTDMEYAGVIRKTDTAALRF-----QLDAGNIVWMPPL-GHS-YGGKTFNLD---MVQAAASVAVSLQAEKLV 223 (456)
T ss_dssp EECCEETTEECBTBEEEEEECHHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCSEEE
T ss_pred EEcccccCcccCceeeEEEECHHHHHH-----HHHCCCeEEECCc-ccC-CCCCEEEEC---HHHHHHHHHHHcCCCEEE
Confidence 543 22 3444455544432 4578999999986 666 479988886 999999999999999999
Q ss_pred EeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCC----------CCC
Q 008693 305 VWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAP 371 (557)
Q Consensus 305 i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~ 371 (557)
|+|||||||++ ++++|++++++|+.+++..|...|.|| ++..+.++|++ ++|.|...| +..
T Consensus 224 ~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~ 297 (456)
T 3d2m_A 224 YLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGI 297 (456)
T ss_dssp EEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCS
T ss_pred EEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCC
Confidence 99999999986 588999999999999988888889994 78888899996 999886554 346
Q ss_pred CeeEecC
Q 008693 372 GTLIRRS 378 (557)
Q Consensus 372 GT~I~~~ 378 (557)
||+|.++
T Consensus 298 GT~i~~~ 304 (456)
T 3d2m_A 298 GTSIAKE 304 (456)
T ss_dssp SEEEECC
T ss_pred ceeeecc
Confidence 8988754
|
| >3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.2e-21 Score=197.52 Aligned_cols=233 Identities=20% Similarity=0.338 Sum_probs=164.7
Q ss_pred CcceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
+++++|.||||+.+.+ .++++++.|... .+.++|+|+++ |...+++++.
T Consensus 47 ~~~~iViK~GGsv~~~--~~~~~~~dI~~l~~~G~~~VvVHGg-G~~i~~~l~~-------------------------- 97 (307)
T 3zzh_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLHGT-GPQVNGRLEA-------------------------- 97 (307)
T ss_dssp CSCCEEEEECHHHHHH--SHHHHHHHHHHHHHBTCCEEEEECC-HHHHHHHHHH--------------------------
T ss_pred CCCEEEEEEChHHhhc--hHHHHHHHHHHHHHCCCCEEEEECC-CHHHHHHHHH--------------------------
Confidence 5578999999986653 478888888754 24566666654 5555555432
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (557)
++.++ ++.+|++++ +++..+.+ +.+| .+|..| .+.|++.|++|+.+++ ++++..
T Consensus 98 -----~gi~~-----------~~~~G~RvT---d~~~l~vv~m~~~-~vn~~l-v~~L~~~G~~Av~l~g---g~~~a~~ 153 (307)
T 3zzh_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLKL-VTALEQLGVRARPITS---GVFTADY 153 (307)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHHH-HHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHHH-HHHHHhCCCCeeEEcC---CcEEEEe
Confidence 12111 123344333 45666665 3467 578776 4679999999999987 345554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+|+ .+++.+.+.+.++.. +++|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++++|||
T Consensus 154 ~~~~d~g~~G~i~~v~~~~i~~l-----L~~g~IpVi~~~-g~~-~~G~~~~i~---~D~~A~~lA~~L~Ad~Li~lTdV 223 (307)
T 3zzh_A 154 LDKDKYKLVGNIKSVTKEPIEAS-----IKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (307)
T ss_dssp SCHHHHBSBEEEEEECCHHHHHH-----HHHTCEEEECCC-EEC-TTCBEEBCC---HHHHHHHHHHHHCCSEEEEECSS
T ss_pred cCccccCccccccccCHHHHHHH-----HHCCCEEEEeCC-eEC-CCCcEEecC---HHHHHHHHHHhCCCCEEEEEeCC
Confidence 344 367777777766543 467899999996 777 479998886 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecCC-------CCCCCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNSY-------NPNAPGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~~-------~p~~~GT~ 374 (557)
||||++ |++++|++++++| +.++...| ...|.|| +++.|.+. +.+++|.|.. ..+..||+
T Consensus 224 ~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~~~~ll~elft~~g~GT~ 298 (307)
T 3zzh_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (307)
T ss_dssp CSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEECGGGHHHHHHSCCCCSEE
T ss_pred cceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeCccHHHHHHhcCCCCcEE
Confidence 999986 5799999999976 66776643 3577787 33444443 7899998622 23567999
Q ss_pred EecCC
Q 008693 375 IRRSR 379 (557)
Q Consensus 375 I~~~~ 379 (557)
|.+..
T Consensus 299 I~~~~ 303 (307)
T 3zzh_A 299 IRRGY 303 (307)
T ss_dssp EECCC
T ss_pred EecCC
Confidence 98753
|
| >2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.83 E-value=2e-20 Score=193.24 Aligned_cols=234 Identities=14% Similarity=0.135 Sum_probs=155.0
Q ss_pred cceEEEEecccccC--CH--------HHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHH
Q 008693 80 QLTCVMKFGGSSLA--SA--------ERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDEL 148 (557)
Q Consensus 80 ~~~~V~KFGGsSv~--~~--------~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l 148 (557)
++++|.||||+++. +. +.++++++.|.... ....+|+||++|...+.+++....
T Consensus 4 ~~~iVIKlGGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~--------------- 68 (316)
T 2e9y_A 4 GRLAVIALGGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEA--------------- 68 (316)
T ss_dssp CCEEEEECCHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHT---------------
T ss_pred CCEEEEEEChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCC---------------
Confidence 35799999999999 64 68889998887653 234567778888777765542110
Q ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-----HhhchHHHHHHHHHHHHHcCCce---
Q 008693 149 SFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-----VSFGECMSTRIFAAYLNKIGVKA--- 220 (557)
Q Consensus 149 ~~i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-----~s~GE~lsa~ll~~~L~~~Gi~a--- 220 (557)
.. +..++...|.+ ...|..++. .+...|...|+++
T Consensus 69 ----------------~~--------------------~~t~~~~l~~~~~~~~G~i~~~l~~-~l~~~l~~~g~~a~~~ 111 (316)
T 2e9y_A 69 ----------------LP--------------------PERPRQPLYIATAMTQAWIGLLLKH-SLEEELRRRGLNVLVP 111 (316)
T ss_dssp ----------------SC--------------------TTSCCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCCCCC
T ss_pred ----------------CC--------------------CCCCHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhcCCCcccc
Confidence 00 00011222222 223334564 6778899999998
Q ss_pred -----EEecccee----------EEEEe---c----C--C---CC------------ceeeecchHHHHHHHhhchhcCC
Q 008693 221 -----RQYDAFDI----------GFITT---D----D--F---TN------------ADILEATYPAVAKRLHGDWITDL 261 (557)
Q Consensus 221 -----~~l~~~~~----------~iit~---~----~--~---~~------------a~i~~~~~~~v~~~l~~~ll~~~ 261 (557)
+.+++.|. ++++. + + | ++ ..+...+...++ .+++.+
T Consensus 112 ~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~-----~lL~~g 186 (316)
T 2e9y_A 112 VVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIA-----EASAES 186 (316)
T ss_dssp EECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHH-----HHHHHC
T ss_pred ceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHH-----HHHHCC
Confidence 67777763 23320 0 0 1 11 012223433333 345678
Q ss_pred ceEEEcCCCcc----cCCCCce----eecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHH
Q 008693 262 AIPIVTGFLGK----AWRTCAI----TTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333 (557)
Q Consensus 262 ~vpVv~Gfig~----~~~~G~~----ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~E 333 (557)
.|||++|+.|. + ++|.. .++ .+|++|+++|.+|+|+.++++|||||||+ ||+ .|++++|++++++|
T Consensus 187 ~IpI~~g~~g~pv~~~-~~g~~~g~~~~i---d~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e 260 (316)
T 2e9y_A 187 PAVVALGGGGVPVVER-PGGVLEPVEAVV---DKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASE 260 (316)
T ss_dssp SEEEECGGGCEEEEEC-TTSCEEECSCCC---CHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHH
T ss_pred CEEEEECCCCCCeeEC-CCCCeecceeee---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHH
Confidence 99999986543 3 35532 222 59999999999999999999999999999 885 69999999999999
Q ss_pred HHHHHHcC---CCcchHh--HHHHHHhCCC-CEEEecC------CCCCCCCeeEec
Q 008693 334 AAELAYFG---AQVLHPQ--SMRPAREGDI-PVRVKNS------YNPNAPGTLIRR 377 (557)
Q Consensus 334 a~eLa~~G---a~vlhp~--a~~~a~~~~I-pv~I~n~------~~p~~~GT~I~~ 377 (557)
+.+++..| ...|.|| +...+.++|+ +++|.|. +.. ..||+|.+
T Consensus 261 ~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 261 LKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGSLEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEESTTHHHHHTT-SSSEEEEC
T ss_pred HHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECcHHHHHHHHcC-CCCeEEec
Confidence 99998743 3557776 5556678899 8999652 121 46888864
|
| >2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.8e-20 Score=188.74 Aligned_cols=115 Identities=17% Similarity=0.177 Sum_probs=90.0
Q ss_pred hhcCCceEEEcCCCcccC-C---CCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHH
Q 008693 257 WITDLAIPIVTGFLGKAW-R---TCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFD 332 (557)
Q Consensus 257 ll~~~~vpVv~Gfig~~~-~---~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~ 332 (557)
+++.|.|||++||.|.+. . .|+..++ .+|++|+.+|.+|+||.++++|||||||+ || ..|++++|++++++
T Consensus 178 lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~---~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i~~~ 252 (310)
T 2we5_A 178 LIKNDIITISCGGGGIPVVGQELKGVEAVI---DKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNVTVA 252 (310)
T ss_dssp HHHTTCEEECCGGGCEEEETTTTEECCCCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEEEHH
T ss_pred HHHCCCEEEEECCCCCCCcCCCCCCcEeec---CHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEEcHH
Confidence 457899999998866432 1 2333333 39999999999999999999999999999 88 48899999999999
Q ss_pred HHHHHHHcC---CCcchHh--HHHHHHhCCC--CEEEec------CCCCCCCCeeEe
Q 008693 333 EAAELAYFG---AQVLHPQ--SMRPAREGDI--PVRVKN------SYNPNAPGTLIR 376 (557)
Q Consensus 333 Ea~eLa~~G---a~vlhp~--a~~~a~~~~I--pv~I~n------~~~p~~~GT~I~ 376 (557)
|+.++...| ...|.|| ++..+.++|+ +++|.| .+..+..||+|.
T Consensus 253 e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 253 ELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITSLENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp HHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEECSGGGGGCBTTBCCSEEEE
T ss_pred HHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECcHHHHHHHHcCCCCCeEEe
Confidence 999997754 3557776 6667778888 899964 233345688875
|
| >4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=199.74 Aligned_cols=232 Identities=20% Similarity=0.344 Sum_probs=164.3
Q ss_pred CcceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
++.++|+|+||+.+.+ .++++++.|... .+.++|||+ ++|...+.+++.
T Consensus 47 ~~~~iVIK~GGsv~~~--~l~~la~dI~~l~~~G~~~VvVH-GgG~~i~~~l~~-------------------------- 97 (464)
T 4ab7_A 47 QQQFAVIKVGGAIISD--NLHELASCLAFLYHVGLYPIVLH-GTGPQVNGRLEA-------------------------- 97 (464)
T ss_dssp --CCEEEEECHHHHHH--CHHHHHHHHHHHHHTTCCCEEEE-CCCHHHHHHHHH--------------------------
T ss_pred CCceEEEEECHHHhhc--hHHHHHHHHHHHHHCCCeEEEEE-CCcHHHHHHHHH--------------------------
Confidence 3678999999997754 478888887753 245666555 667776766542
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec-
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD- 234 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~- 234 (557)
++.++ ++.+|++++ +++..+.+ +.+| .+|.. +...|++.|++|+++++ ++++.+
T Consensus 98 -----~gi~~-----------~f~~G~RvT---d~~tl~vv~mv~~-~vn~~-lv~~L~~~G~~Avglsg---g~~~a~~ 153 (464)
T 4ab7_A 98 -----QGIEP-----------DYIDGIRIT---DEHTMAVVRKCFL-EQNLK-LVTALEQLGVRARPITS---GVFTADY 153 (464)
T ss_dssp -----TTCCC-----------CEETTEECB---CHHHHHHHHHHHH-HHHHH-HHHHHHHTTCCEEEECS---SSEEEEE
T ss_pred -----cCCCc-----------cccCCeecC---CHHHHHHHHHHHH-HHHHH-HHHHHHhCCCCeEEECC---CcEEEEe
Confidence 22211 123454444 34444443 2346 57876 45679999999999987 355554
Q ss_pred ----CCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCC
Q 008693 235 ----DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDV 309 (557)
Q Consensus 235 ----~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDV 309 (557)
+++ .+++.+++...++. +++.|.|||++|+ |.+ .+|++++++ +|++|+.+|.+|+|++++++|||
T Consensus 154 ~~~~d~g~vG~I~~v~~~~I~~-----lL~~G~IPVi~~~-g~~-~~G~~~ni~---~D~~Aa~lA~~L~Ad~Li~lTdV 223 (464)
T 4ab7_A 154 LDKDKYKLVGNIKSVTKEPIEA-----SIKAGALPILTSL-AET-ASGQMLNVN---ADVAAGELARVFEPLKIVYLNEK 223 (464)
T ss_dssp SCTTTTBSBEEEEEECCHHHHH-----HHHTTCEEEEESE-EEC-TTCBEEECC---HHHHHHHHHHHHCCSEEEEEESS
T ss_pred cCccccCCcCcccccCHHHHHH-----HHHCCcEEEEcCC-cCC-CCCCEEEec---HHHHHHHHHHHcCCCEEEEEecc
Confidence 344 36777777776654 3468899999996 777 479999887 99999999999999999999999
Q ss_pred CccccCCCCCCCCCccccccCHHH-HHHHHHcC--CCcchHh--HHHHHHhC---CCCEEEecC-------CCCCCCCee
Q 008693 310 DGVLTCDPNIHPHAKPVPYLTFDE-AAELAYFG--AQVLHPQ--SMRPAREG---DIPVRVKNS-------YNPNAPGTL 374 (557)
Q Consensus 310 dGV~taDP~~v~~a~~i~~ls~~E-a~eLa~~G--a~vlhp~--a~~~a~~~---~Ipv~I~n~-------~~p~~~GT~ 374 (557)
||||++ |++++|++++++| +.+|...| ...|.|| +++.|.+. +.+++|.+. |..++.||+
T Consensus 224 ~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~~~~ll~eLft~~g~GT~ 298 (464)
T 4ab7_A 224 GGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIINVQDLQKELFTDSGAGTM 298 (464)
T ss_dssp CSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEESTTHHHHTTSSSTTSEE
T ss_pred cccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEecChHHHHHHhcCCCCceE
Confidence 999987 4789999999986 56676543 3568887 45556554 788998762 223567999
Q ss_pred EecC
Q 008693 375 IRRS 378 (557)
Q Consensus 375 I~~~ 378 (557)
|.+.
T Consensus 299 I~~~ 302 (464)
T 4ab7_A 299 IRRG 302 (464)
T ss_dssp EECC
T ss_pred EecC
Confidence 9876
|
| >3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-20 Score=184.31 Aligned_cols=151 Identities=15% Similarity=0.084 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeec
Q 008693 203 CMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTL 282 (557)
Q Consensus 203 ~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttl 282 (557)
.+++. +.++|+++|+++..+++.+.++.+.+ ...+...+.. +++.+.|||++||++.+ .+|.+.++
T Consensus 98 ~ln~~-l~~~l~~~G~~a~~l~~~d~~~~~~g-------~~v~~~~i~~-----lL~~g~ipVi~~~~~~~-~~g~~~~~ 163 (266)
T 3k4o_A 98 RFNNI-IIDTLQSYDIPAVSIQPSSFVVFGDK-------LIFDTSAIKE-----MLKRNLVPVIHGDIVID-DKNGYRII 163 (266)
T ss_dssp HHHHH-HHHHHHTTTCCEEEECGGGTCEESSS-------CBCCCHHHHH-----HHHTTCEEEEECEEEEE-SSSCEEEE
T ss_pred HHHHH-HHHHHHHCCCcEEEeeHHHcCcccCc-------eEecHHHHHH-----HHHCCCEEEEeCCEEEc-CCCCeeee
Confidence 47777 57789999999999999998666532 1223333332 35689999999988877 35666544
Q ss_pred CCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHH--------cCCCcchHhHHHHHH
Q 008693 283 GRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAY--------FGAQVLHPQSMRPAR 354 (557)
Q Consensus 283 gRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~--------~Ga~vlhp~a~~~a~ 354 (557)
++|++|+.+|.+|+|+++++|||||||| +||++ +++++.+|+.++.. ++...|.||-.....
T Consensus 164 ---~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~------i~~~~~~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~ 233 (266)
T 3k4o_A 164 ---SGDDIVPYLANELKADLILYATDVDGVL-IDNKP------IKRIDKNNIYKILNYLSGSNSIDVTGGMKYKIEMIRK 233 (266)
T ss_dssp ---CHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSB------CSEECTTTHHHHHHHHHSTTCSCCSSHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCee------cCcCCHHHHHHHHHHhccccCCcccCCHHHHHHHHHH
Confidence 4999999999999999999999999999 88865 45555444444432 234457887322222
Q ss_pred hCCCCEEEecCCCCC---------CCCeeEecC
Q 008693 355 EGDIPVRVKNSYNPN---------APGTLIRRS 378 (557)
Q Consensus 355 ~~~Ipv~I~n~~~p~---------~~GT~I~~~ 378 (557)
-.. +++|.|...|+ ..||+|.+.
T Consensus 234 a~~-~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 234 NKC-RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp TTC-EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred Hhc-CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 223 99999987763 469998763
|
| >3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=5e-20 Score=198.23 Aligned_cols=235 Identities=13% Similarity=0.164 Sum_probs=163.2
Q ss_pred CcceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 79 KQLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
+++++|+||||+.+. +.++++++.|.... +.++|||++|+..+++.|.+.+
T Consensus 57 ~~~~iViK~GGsv~~--~~l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~g------------------------- 109 (460)
T 3s6g_A 57 QERFAVIKVGGAVIQ--DDLPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAAD------------------------- 109 (460)
T ss_dssp GGGSEEEEECHHHHH--HCHHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHS-------------------------
T ss_pred CCCEEEEEEChHHhh--hHHHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcC-------------------------
Confidence 467899999998543 34788888887542 5678888877554554433321
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEecccee--EEEEec
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFITTD 234 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit~~ 234 (557)
.++ ++.+|++++.+.+.....++ +| .+|..|++ +|++.|++|+.+++..+ ..++..
T Consensus 110 -------i~~-----------~f~~G~RvTd~~~l~vv~~~--lg-~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~~~ 167 (460)
T 3s6g_A 110 -------IPT-----------ERVDGLRVTRDEAMPIIRDT--LT-QANLALVD-AIRDAGGRAAAVPRGVFEADIVDAD 167 (460)
T ss_dssp -------CCC-----------CCCSSSCCBCTTTHHHHHHH--HH-HHHHHHHH-HHHHTTCCEEEECSSSEEEEESCTT
T ss_pred -------CCc-----------cccCCccCCCHHHHHHHHHH--HH-HHHHHHHH-HHHhCCCCceEEecCeEEEEEecCc
Confidence 111 12334555544444444444 36 88988776 79999999999998432 111223
Q ss_pred CCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 235 DFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 235 ~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+|+ .+++..++.+.++. +++.|.|||++++ |.+ .+|++++++ +|++|+.+|.+|+|++++++|||||||
T Consensus 168 d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p~-g~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~Gv~ 237 (460)
T 3s6g_A 168 KLGRVGEPRHIHLDLVGS-----AARAGQAAILACL-GET-PDGTLVNIN---ADVAVRALVHALQPYKVVFLTGTGGLL 237 (460)
T ss_dssp TTBSEEEEEEECCHHHHH-----HHHTTCEEEEECE-EEC-TTCCEEEEC---HHHHHHHHHHHHCCSEEEEECSSCSCB
T ss_pred ccCccCcceEEcHHHHHH-----HHHCCcEEEEECc-eEC-CCCcEEecC---HHHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 555 36777777776654 3468899999985 767 479999887 999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHH-HHHHHHHcC--CCcchHh--HHHHHHhCCCCEEEecCCCC----------CCCCeeEecC
Q 008693 314 TCDPNIHPHAKPVPYLTFD-EAAELAYFG--AQVLHPQ--SMRPAREGDIPVRVKNSYNP----------NAPGTLIRRS 378 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~-Ea~eLa~~G--a~vlhp~--a~~~a~~~~Ipv~I~n~~~p----------~~~GT~I~~~ 378 (557)
+. ++++|++++.+ |+.+|...| ...|.|+ ++..+.+...++++.+...| ++.||+|.+.
T Consensus 238 ~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 238 DE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp CT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred CC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 84 47899999996 888887643 3466776 55556664324555554444 3579999875
|
| >3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.5e-20 Score=202.90 Aligned_cols=148 Identities=19% Similarity=0.331 Sum_probs=127.1
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc----------CceeEEEeCCchhhhHHHH
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS----------EVSLSLTLDPSKLWSRELI 451 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS----------e~sIS~~I~~~~~~~~~~~ 451 (557)
....|+||++++|++.|++.+ +.+.||+.+++|+.|+++||+||||.++ ..+++|+++.+++..
T Consensus 431 ~~~~v~Gia~~~~~a~i~i~~--~~~~~g~~~~if~~La~~~I~vDmI~q~~~~~~~~g~~~~~isftv~~~d~~~---- 504 (600)
T 3l76_A 431 HLPAVRGVALDQDQAQIAIRH--VPDRPGMAAQLFTALAEANISVDMIIQSQRCRINQGTPCRDIAFMVAEGDSSQ---- 504 (600)
T ss_dssp -CCSCCEEEEECSEEEEEEEE--EESSTTHHHHHHHHHHHTTCCCCEEEEEEECCCSSSSCEEEEEEEEEHHHHHH----
T ss_pred ccCceEEEEeeCCEEEEEEec--CCCCccHHHHHHHHHHHcCCcEEEEEecccccccCCCccceEEEEEeHHHHHH----
Confidence 445799999999999999984 8899999999999999999999999765 137999998876542
Q ss_pred HHHHHHHHHHHhh---hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHH
Q 008693 452 QQELDHVVEELEK---IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQ 527 (557)
Q Consensus 452 ~~~l~~~~~~l~~---~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~k 527 (557)
...+++++.. ...+.+.+++++||+||. |..+||+++|+|++|+++||||.||++ ||.+||++|+++|.++
T Consensus 505 ---a~~~l~~~~~~~~~~~v~~~~~~akVSiVG~GM~~~~Gvaa~~f~aL~~~~Ini~mist--SEi~Is~vV~~~~~~~ 579 (600)
T 3l76_A 505 ---AEAILQPLIKDWLDAAIVVNKAIAKVSIVGSGMIGHPGVAAHFFAALAQENINIEMIAT--SEIKISCVVPQDRGVD 579 (600)
T ss_dssp ---HHHHHHHHTTTSTTCEEEEECCEEEEEEECGGGTTCTTHHHHHHHHHHTTTCCCCEEEE--CSSEEEEEEEGGGHHH
T ss_pred ---HHHHHHHHHHhcCCceEEEeCCeEEEEEECcccccCccHHHHHHHHHHHCCCceEEEEc--CCceEEEEEeHHHHHH
Confidence 1222333332 246888899999999997 889999999999999999999999996 9999999999999999
Q ss_pred HHHHHHHHhccCc
Q 008693 528 CVRALHETFFESD 540 (557)
Q Consensus 528 Av~~LH~~f~~~~ 540 (557)
|+++||++|+++.
T Consensus 580 Av~alh~~F~l~~ 592 (600)
T 3l76_A 580 ALKAAHSAFNLAG 592 (600)
T ss_dssp HHHHHHHHTTTTS
T ss_pred HHHHHHHHhCCCC
Confidence 9999999999764
|
| >3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.1e-19 Score=195.85 Aligned_cols=235 Identities=17% Similarity=0.281 Sum_probs=159.8
Q ss_pred CCcceEEEEecccccCCHHHHHHHHHHHHcC--CCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHH
Q 008693 78 EKQLTCVMKFGGSSLASAERMREVAELILSF--PNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (557)
Q Consensus 78 ~~~~~~V~KFGGsSv~~~~~~~~va~iI~~~--~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (557)
+++.++|+||||+.+.+ .++++++.|... .+.++|||++|+..+ +.+++.
T Consensus 59 ~~~~~iViK~GG~v~~~--~l~~va~dI~~l~~~G~~~VvVHGgg~~i-~~~l~~------------------------- 110 (467)
T 3s6k_A 59 DAKRFAVVKVGGAVLRD--DLEALTSSLSFLQEVGLTPIVLHGAGPQL-DAELSA------------------------- 110 (467)
T ss_dssp CSTTSCCCCCCHHHHTT--CCHHHHHHHHHHHTTSCCCCCCCCCCHHH-HHHHHT-------------------------
T ss_pred CCCcEEEEEEChHHhhh--HHHHHHHHHHHHHHCCCcEEEEECCChHH-HHHHHH-------------------------
Confidence 34678999999996554 368888887753 346778777765444 444331
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-hhchHHHHHHHHHHHHHcCCceEEecccee--EEEE
Q 008693 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDI--GFIT 232 (557)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~-s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~--~iit 232 (557)
++... ++.+|+++ .+++..+.+. .+| .+|..|++ +|++.|++|+.+++..+ ..++
T Consensus 111 ------~gi~~-----------~f~~G~Rv---Td~~~l~vv~~~~g-~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~ 168 (467)
T 3s6k_A 111 ------AGIEK-----------QTVNGLRV---TSPHALAIVRKVFQ-ASNLKLVE-ALQQNGARATSITGGVFEAEYLN 168 (467)
T ss_dssp ------TSCCC-----------CCCSSSCC---BCHHHHHHHHHHHH-HHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSC
T ss_pred ------cCCCc-----------cccCCccC---CCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCceEEcCccEEEEecc
Confidence 11111 11223322 3456666553 357 88998776 79999999999998432 2222
Q ss_pred ecCCC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 233 TDDFT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 233 ~~~~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
..+|+ .+++..++.+.++. +++.|.|||+++ +|.+ .+|+.++++ +|++|+.+|.+|+|++++++|||||
T Consensus 169 ~~d~g~~G~I~~v~~~~i~~-----lL~~g~IpVi~p-vg~~-~~G~~~~i~---~D~~Aa~lA~~L~Ad~LiilTdv~G 238 (467)
T 3s6k_A 169 RDTYGLVGEVKAVNLAPIEA-----SLQAGSIPVITS-LGET-PSGQILNVN---ADFAANELVQELQPYKIIFLTGTGG 238 (467)
T ss_dssp SSSSBSBBCCCCBCCHHHHT-----HHHHTCBCCCCS-CCCC-SSSCCCBCC---HHHHHHHHHHHHCCSSCCCCCSSCS
T ss_pred CcccCccceEEEEcHHHHHH-----HHHCCCEEEEEC-ceEC-CCCcEEecC---HHHHHHHHHHhcCCCEEEEEecccc
Confidence 33555 36777777765543 356789999995 3445 368888886 9999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHH-HHHHHHHc--CCCcchHh--HHHHHHhCCCCEEEecCCCCC----------CCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFD-EAAELAYF--GAQVLHPQ--SMRPAREGDIPVRVKNSYNPN----------APGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~-Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~----------~~GT~I~ 376 (557)
||+.| +++|++++.. |+.++... +...|.|+ ++..+.+...++++.+...|+ +.||+|.
T Consensus 239 v~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~ 312 (467)
T 3s6k_A 239 LLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVR 312 (467)
T ss_dssp CCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBC
T ss_pred eeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEe
Confidence 99854 6788999985 77777654 34567776 555566643356766665553 4689887
Q ss_pred cC
Q 008693 377 RS 378 (557)
Q Consensus 377 ~~ 378 (557)
+.
T Consensus 313 ~~ 314 (467)
T 3s6k_A 313 RG 314 (467)
T ss_dssp CC
T ss_pred CC
Confidence 64
|
| >4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.1e-14 Score=150.36 Aligned_cols=116 Identities=16% Similarity=0.101 Sum_probs=82.7
Q ss_pred chhcCCceEEEcCCCcc--cC----CCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCcccccc
Q 008693 256 DWITDLAIPIVTGFLGK--AW----RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYL 329 (557)
Q Consensus 256 ~ll~~~~vpVv~Gfig~--~~----~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~l 329 (557)
.+++++.|||..|.-|. .. .+|...+. ..|++|+.+|.+|+||.++|+|||||||+.+|+ |++++|+++
T Consensus 198 ~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vi---d~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~~i 272 (332)
T 4axs_A 198 QNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVI---DKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALKTV 272 (332)
T ss_dssp HHHHTTCEEECCGGGCEEEEESSSCEEECSSCC---CHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECSSC
T ss_pred HhhcCCeEEEecccCCCCccccCCcccCceeee---chHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcccC
Confidence 34577888877543111 10 01233333 389999999999999999999999999999886 789999999
Q ss_pred CHHHHHHHHHcC---CCcchHh--HHHHHHhCC--CCEEEecCCCC-----CCCCeeEe
Q 008693 330 TFDEAAELAYFG---AQVLHPQ--SMRPAREGD--IPVRVKNSYNP-----NAPGTLIR 376 (557)
Q Consensus 330 s~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~--Ipv~I~n~~~p-----~~~GT~I~ 376 (557)
|.+|+.++...| ...|-|| |...+.+.+ .+..|.+..+. ...||+|.
T Consensus 273 t~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~~~~~~~~l~g~~GT~Iv 331 (332)
T 4axs_A 273 DVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIADLSKVEDALKGLSGTKII 331 (332)
T ss_dssp BHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEECSTTHHHHTTTSSSEEEB
T ss_pred CHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHCCCCCcEEe
Confidence 999999998754 4569998 444555554 45677642221 13588885
|
| >3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.6e-14 Score=147.17 Aligned_cols=122 Identities=16% Similarity=0.148 Sum_probs=93.2
Q ss_pred hhchhcCCceEEEcCCCcccC--CCCcee-ecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 254 HGDWITDLAIPIVTGFLGKAW--RTCAIT-TLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 254 ~~~ll~~~~vpVv~Gfig~~~--~~G~~t-tlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
++.|++++.|||++||.|... .++..+ +...+.+|++|+.+|.+|+||.++|+|||||||+ ||+ .|++++|++++
T Consensus 181 I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~~it 258 (317)
T 3kzf_A 181 IKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLEEIK 258 (317)
T ss_dssp HHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECCEEE
T ss_pred HHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECcCcC
Confidence 334567899999998877621 234343 3446779999999999999999999999999999 999 59999999999
Q ss_pred HHHHHHHHHcC---CCcchHh---HHHHHHhCCCCEEEecCCCC-----CCCCeeEec
Q 008693 331 FDEAAELAYFG---AQVLHPQ---SMRPAREGDIPVRVKNSYNP-----NAPGTLIRR 377 (557)
Q Consensus 331 ~~Ea~eLa~~G---a~vlhp~---a~~~a~~~~Ipv~I~n~~~p-----~~~GT~I~~ 377 (557)
++|+.++...| ...|.|| |+..+...+.+++|.|..++ ...||+|.+
T Consensus 259 ~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~~~l~~~l~G~~GT~I~~ 316 (317)
T 3kzf_A 259 LSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSLSTAVDALNGKCGTRIIK 316 (317)
T ss_dssp HHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCGGGHHHHHTTSSSEEEEC
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcchHHHHHHHCCCCCeEEec
Confidence 99999997643 3568887 44455566788999875332 126898875
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=99.32 Aligned_cols=114 Identities=17% Similarity=0.261 Sum_probs=85.0
Q ss_pred ccchhhHHHHHHHHHHhCCceEEEEEccC---ce-eEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEE
Q 008693 405 MLGQYGFLAKVFSTFEDLGISVDVVATSE---VS-LSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLI 480 (557)
Q Consensus 405 m~~~~g~la~If~~L~~~gI~Vd~IstSe---~s-IS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIV 480 (557)
+.++||.++++|+.|+++||||++++++. .. +.|+.+..+ .+.+. |+..+ . .....+++
T Consensus 13 v~d~~G~l~~i~~~la~~~inI~~i~~~~~~~~~~~~~~~~d~~---------~a~~~---L~~~G-~----~v~~~svv 75 (144)
T 2f06_A 13 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSDPD---------KAYKA---LKDNH-F----AVNITDVV 75 (144)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESCHH---------HHHHH---HHHTT-C----CEEEEEEE
T ss_pred ecCCCcHHHHHHHHHHHCCCCEEEEEEEecCCCCEEEEEeCCHH---------HHHHH---HHHcC-C----eEeeeeEE
Confidence 45689999999999999999999996542 23 456653221 11222 32211 1 12345789
Q ss_pred c-cccccchHHHHHHHHHHhCCCcE-EEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008693 481 G-NVQRSSLILEKAFRVLRRSGVNV-QMISQGASKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 481 G-~~~~~~~v~~rif~~L~~~gInI-~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
| .|.+.||++++++++|+++|||| .+++.. ++..++++++.+|.++|+++||++=
T Consensus 76 ~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~~~~~~~i~~~d~~~A~~~L~~~g 132 (144)
T 2f06_A 76 GISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NNNVANVVIRPSNMDKCIEVLKEKK 132 (144)
T ss_dssp EEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ETTEEEEEEEESCHHHHHHHHHHTT
T ss_pred EEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cCCcEEEEEEeCCHHHHHHHHHHcC
Confidence 9 48899999999999999999999 566653 6778899999999999999999973
|
| >2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B* | Back alignment and structure |
|---|
Probab=98.70 E-value=1e-07 Score=89.99 Aligned_cols=101 Identities=17% Similarity=0.287 Sum_probs=80.5
Q ss_pred chHhHHHHHHhCCC--CEEEecCCCCCCCCeeEecCCC--------------CCcceeeEEeeeccEEEEEEEecCccch
Q 008693 345 LHPQSMRPAREGDI--PVRVKNSYNPNAPGTLIRRSRD--------------MSKAVLTSIVLKRNVTMLDIVSTRMLGQ 408 (557)
Q Consensus 345 lhp~a~~~a~~~~I--pv~I~n~~~p~~~GT~I~~~~~--------------~~~~~Vt~Is~~~nialItI~~~~m~~~ 408 (557)
+-.+-+.++.++|| ++.+.|+++|+..+|.|+-.-. ......+.+...+++++|++.|.+|.+.
T Consensus 29 ~~a~if~~La~~~InId~i~~s~~~~~~~~~~isf~v~~~d~~~a~~~l~~~~~~~~~~~v~~~~~~a~VsvVG~gm~~~ 108 (178)
T 2dtj_A 29 EAAKVFRALADAEINIDMVLQNVSSVEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSH 108 (178)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECCCCTTTCEEEEEEEEEHHHHHHHHHHHHTTTTTTTCSEEEEESCEEEEEEEEECCTTC
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCCCCCCCceEEEEEEccccHHHHHHHHHHHHHhcCCCeEEEeCCeEEEEEEcCCcccC
Confidence 33455788899994 5667788887766677752100 0111245788899999999999999999
Q ss_pred hhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 409 YGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 409 ~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
||+++++|+.|+++||||.|+++|+.+++|.++.++.
T Consensus 109 ~Gv~arif~aLa~~~InI~~istSe~~Is~vV~~~d~ 145 (178)
T 2dtj_A 109 PGVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 145 (178)
T ss_dssp HHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred ccHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 9999999999999999999999999999999988764
|
| >4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X | Back alignment and structure |
|---|
Probab=98.39 E-value=5.9e-07 Score=86.23 Aligned_cols=60 Identities=15% Similarity=0.412 Sum_probs=56.7
Q ss_pred eeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 386 Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
...+...+++++|++.|.+|.+.||+++|+|++|+++||||.||++||.+||+.|++++.
T Consensus 106 ~~~v~~~~~iakVSvVG~GM~~~~GVaak~F~aLa~~~INI~mIstSEi~IS~vV~~~d~ 165 (200)
T 4go7_X 106 FSQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 165 (200)
T ss_dssp CSEEEEECCEEEEEEEEESCTTCHHHHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred eeeEEEecCeeeeeeeccccccCCCcHHHHHHHHHHCCCCEEEEEccCCEEEEEEeHHHH
Confidence 457888999999999999999999999999999999999999999999999999998874
|
| >2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A | Back alignment and structure |
|---|
Probab=98.28 E-value=9.3e-07 Score=82.35 Aligned_cols=69 Identities=30% Similarity=0.456 Sum_probs=63.2
Q ss_pred hheeecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCC-----ceEEEEEEecccHHHHHHHHHH
Q 008693 465 IAIVNLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGAS-----KVNISLIVNDDEAEQCVRALHE 534 (557)
Q Consensus 465 ~~~i~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsS-----e~sIs~vV~~~d~~kAv~~LH~ 534 (557)
+..|+..+++++|+++| +.+.+|+++++|+.|+++||||.||+|+.+ +.+++|+|+++|.++|.+.|++
T Consensus 7 v~gIa~~~~~a~Itv~g-~~~~~G~~a~if~~La~~~InVd~I~q~~~~~~~g~~~isf~V~~~d~~~a~~~L~~ 80 (167)
T 2dt9_A 7 VTGVALDLDHAQIGLIG-IPDQPGIAAKVFQALAERGIAVDMIIQGVPGHDPSRQQMAFTVKKDFAQEALEALEP 80 (167)
T ss_dssp EEEEEEECSEEEEEEEE-EECSTTHHHHHHHHHHHHTCCCSCEEBCCCCSCTTEEEEEEEEEGGGHHHHHHHHHH
T ss_pred eeEEEEeCCEEEEEEec-CCCCCCHHHHHHHHHHHcCCcEEEEEcCCCCCCCCceEEEEEEehHHHHHHHHHHHH
Confidence 56788889999999999 566799999999999999999999999876 7899999999999999999987
|
| >2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.6e-06 Score=79.34 Aligned_cols=99 Identities=22% Similarity=0.290 Sum_probs=72.7
Q ss_pred hHhHHHHHHhCCCCEEEecCCCCCCCC----eeEecCCCC-----------CcceeeEEeeeccEEEEEEEecCccchhh
Q 008693 346 HPQSMRPAREGDIPVRVKNSYNPNAPG----TLIRRSRDM-----------SKAVLTSIVLKRNVTMLDIVSTRMLGQYG 410 (557)
Q Consensus 346 hp~a~~~a~~~~Ipv~I~n~~~p~~~G----T~I~~~~~~-----------~~~~Vt~Is~~~nialItI~~~~m~~~~g 410 (557)
-.+-+..+.++||++......... .| |++.+..+. ..-.++.+...++++++++.|.+|.+.||
T Consensus 40 ~~~if~~La~~~Invd~i~~s~~~-~g~~~isf~v~~~~~~~a~~~l~~~~~~l~~~~i~~~~~~a~vsvvG~~m~~~~G 118 (167)
T 2re1_A 40 AYQILGAVADANIEVDMIIQNVGS-EGTTDFSFTVPRGDYKQTLEILSERQDSIGAASIDGDDTVCKVSAVGLGMRSHVG 118 (167)
T ss_dssp HHHHHHHHHTTTCCCCCEEEC-----CEEEEEEEECGGGHHHHHHHHHHSSTTTTCSEEEEESSEEEEEEECSSCTTCCC
T ss_pred HHHHHHHHHHcCCeEEEEEcCCCC-CCeeEEEEEEechHHHHHHHHHHHHHHHcCCceEEecCCEEEEEEECCCcCCCcC
Confidence 344577788888886655432221 24 233222110 01124678889999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 411 FLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+++++|+.|+++||+|.++++|+.+++|.++.++.
T Consensus 119 v~a~i~~aL~~~~InI~~istse~~is~vv~~~d~ 153 (167)
T 2re1_A 119 VAAKIFRTLAEEGINIQMISTSEIKVSVLIDEKYM 153 (167)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSEEEEEEEGGGH
T ss_pred HHHHHHHHHHHCCCcEEEEEcccCEEEEEEeHHHH
Confidence 99999999999999999999999999999988763
|
| >3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.8e-06 Score=79.39 Aligned_cols=59 Identities=15% Similarity=0.407 Sum_probs=55.8
Q ss_pred eEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 387 TSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 387 t~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
..|...+++++|++.|.+|.+.||+++++|+.|+++||+|.|+++|+.+|+|.+++++.
T Consensus 88 ~~v~~~~~va~VsvVG~gm~~~~Gvaa~~f~aLa~~~InI~~IstSei~Is~vV~~~d~ 146 (181)
T 3s1t_A 88 SQLLYDDHIGKVSLIGAGMRSHPGVTATFCEALAAVGVNIELISTSEIRISVLCRDTEL 146 (181)
T ss_dssp SEEEEESCEEEEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred ceEEEeCCEEEEEEEecccccCchHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEeHHHH
Confidence 46788899999999999999999999999999999999999999999999999998874
|
| >3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.09 E-value=2.9e-06 Score=78.20 Aligned_cols=68 Identities=25% Similarity=0.336 Sum_probs=61.5
Q ss_pred hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEeccc-HHHHHHHHHH
Q 008693 465 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDE-AEQCVRALHE 534 (557)
Q Consensus 465 ~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d-~~kAv~~LH~ 534 (557)
+..|+..+++++|++.|. |...+|+++++|+.|+++||+|.||+| |+.+|+|.|++++ ++++++.||+
T Consensus 9 v~gIa~~~~va~Iti~~~~m~~~~g~~~~if~~La~~~I~vd~I~~--s~~~Isf~v~~~~~~~~il~~l~~ 78 (157)
T 3mah_A 9 IKAVAAKDGITVIKVKSSNKLLSWHFMRKLFEIFEFYQEPVDMVAT--SEVGVSLTIDNDKNLPDIVRALSD 78 (157)
T ss_dssp CCEEEEEEEEEEEEEEECTTSCHHHHHHHHHHHHHHTTCCCSCEEC--CSSEEEEEESCCTTHHHHHHHHTT
T ss_pred eEEEEecCCEEEEEEEeCCCCCchhHHHHHHHHHHHcCCCEEEEEe--cCCEEEEEECChHHHHHHHHHHhc
Confidence 567888899999999996 888999999999999999999999998 7889999999998 7778888776
|
| >3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.66 E-value=9.4e-05 Score=79.32 Aligned_cols=101 Identities=13% Similarity=0.191 Sum_probs=75.8
Q ss_pred CcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCCCc------------ceeeEEeeeccEEEEEEEecCccchhh
Q 008693 343 QVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDMSK------------AVLTSIVLKRNVTMLDIVSTRMLGQYG 410 (557)
Q Consensus 343 ~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~~~------------~~Vt~Is~~~nialItI~~~~m~~~~g 410 (557)
..+-.+-+..+.+++|++...++. . ..=|+..+..+..+ -....|...+++++|++.|.+|.+.||
T Consensus 312 ~g~~~~if~~l~~~~i~vd~i~~~-~-~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~~~~G 389 (446)
T 3tvi_A 312 VGFCRKILSILEMYGVSFEHMPSG-V-DSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMAKTKG 389 (446)
T ss_dssp TTHHHHHHHHHHTTTCCEEEBCEE-T-TEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGSSCTT
T ss_pred HHHHHHHHHHHHHcCCcEEEEecC-C-CEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCccCChh
Confidence 344556788899999998776532 1 11122222211110 013468889999999999999999999
Q ss_pred HHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 411 FLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 411 ~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
+++++|+.|+++||||.||+ +|+.+|+|.|++++.
T Consensus 390 vaarif~aLa~~~InI~mIsqgtSei~Is~vV~~~d~ 426 (446)
T 3tvi_A 390 IANKIFTALSKENVNIRMIDQGSSEINVIVGVETVDF 426 (446)
T ss_dssp HHHHHHHHHHHTTCCEEEEEECSCTTEEEEEEEGGGH
T ss_pred HHHHHHHHHHHCCCCEEEEEecCCCceEEEEEcHHHH
Confidence 99999999999999999999 789999999998874
|
| >3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00012 Score=78.12 Aligned_cols=98 Identities=18% Similarity=0.347 Sum_probs=73.4
Q ss_pred HhHHHHHHhCCCCEEEec--CCCCCCCC-eeE---ecCCCCC-----------cceeeEEeeeccEEEEEEEecCccchh
Q 008693 347 PQSMRPAREGDIPVRVKN--SYNPNAPG-TLI---RRSRDMS-----------KAVLTSIVLKRNVTMLDIVSTRMLGQY 409 (557)
Q Consensus 347 p~a~~~a~~~~Ipv~I~n--~~~p~~~G-T~I---~~~~~~~-----------~~~Vt~Is~~~nialItI~~~~m~~~~ 409 (557)
.+-+..+.++||++.... +.. ...| +.| .+..+.. .-....+...++++++++.|.+|.+.|
T Consensus 280 ~~If~~La~~~I~vd~I~q~~s~-~~~g~~~isf~v~~~~~~~a~~~l~~~~~~~~~~~v~~~~~~a~vsvVG~gm~~~~ 358 (421)
T 3ab4_A 280 AKVFRALADAEINIDMVLQNVFS-VEDGTTDITFTCPRSDGRRAMEILKKLQVQGNWTNVLYDDQVGKVSLVGAGMKSHP 358 (421)
T ss_dssp HHHHHHHHHTTCCCEEEEECCCC---CCEEEEEEEEETTTHHHHHHHHHHHHTTTTCSEEEEECCEEEEEEECGGGTSCT
T ss_pred HHHHHHHHHcCCcEEEEEccCcc-ccCCcceEEEEEechhHHHHHHHHHHHHHHcCCceEEEeCCeEEEEEEccCcccCc
Confidence 456788899999977553 221 0124 222 2221110 001346788999999999999999999
Q ss_pred hHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 410 GFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 410 g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
|+++++|+.|+++||||.|+++|+.+++|.++.++.
T Consensus 359 Gv~a~~f~aL~~~~InI~~is~Se~~is~vV~~~d~ 394 (421)
T 3ab4_A 359 GVTAEFMEALRDVNVNIELISTSEIRISVLIREDDL 394 (421)
T ss_dssp THHHHHHHHHHHTTCCCCEEEEETTEEEEEEEGGGH
T ss_pred cHHHHHHHHHHHCCCCEEEEEcCCCeEEEEEeHHHH
Confidence 999999999999999999999999999999998874
|
| >2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00037 Score=75.94 Aligned_cols=101 Identities=13% Similarity=0.222 Sum_probs=74.9
Q ss_pred CCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCCC--C---c----------ceeeEEeeeccEEEEEEEecCcc
Q 008693 342 AQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRDM--S---K----------AVLTSIVLKRNVTMLDIVSTRML 406 (557)
Q Consensus 342 a~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~~--~---~----------~~Vt~Is~~~nialItI~~~~m~ 406 (557)
...+-.+-+..+.++||++....+. +..=|...+..+. . . ..+..+...+++++|++.|. |.
T Consensus 354 ~~g~~~~if~~la~~~I~vd~I~ss--e~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~-m~ 430 (510)
T 2cdq_A 354 QVGFLAKVFSIFEELGISVDVVATS--EVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGN-VQ 430 (510)
T ss_dssp CTTHHHHHHHHHHHTTCCEEEEEEE--TTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEEC-GG
T ss_pred cccHHHHHHHHHHHcCCcEEEEEeC--CCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEE-CC
Confidence 3445567788999999997765432 1111222221110 0 0 11356888999999999999 99
Q ss_pred chhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 407 GQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 407 ~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
+.+|+++++|++|+++||||.||+ +||.+|||.|++++.
T Consensus 431 ~~~Gvaa~~f~aL~~~~InI~mIsqGsSei~Is~vV~~~d~ 471 (510)
T 2cdq_A 431 HSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEA 471 (510)
T ss_dssp GHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHH
T ss_pred CChhHHHHHHHHHHHCCCCEEEEEecCCcceEEEEEeHHHH
Confidence 999999999999999999999999 689999999998764
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.055 Score=50.73 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=71.2
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc----cCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeec
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT----SEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNL 470 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist----Se~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~ 470 (557)
...|++.+. ++||.++++...|+++|+||.-+.+ ....+.+.+.... ...+.+++.|..+..++.-...+.-
T Consensus 6 ~~~itv~~~---DrpGiva~vt~~La~~g~NI~d~~~~~~~~~f~~~~~v~~~~-~~~~~l~~~L~~~~~~~~~~~~~~~ 81 (192)
T 1u8s_A 6 HLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP-SNITRVETTLPLLGQQHDLITMMKR 81 (192)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH-HHHHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEEEEcC---CCCcHHHHHHHHHHHCCCCEEeeeeeecCCceEEEEEEecCC-CCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356777763 6899999999999999999987643 2234444453322 1233344455544433321111111
Q ss_pred --------ccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 471 --------LQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 471 --------~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
.....+|.+.| .+.||+++++.+.|++.|+||.-+.+.
T Consensus 82 ~~~~~~~~~~~~~~l~v~~--~D~~Gil~~v~~~l~~~~~nI~~~~~~ 127 (192)
T 1u8s_A 82 TSPHDHQTHAYTVEVYVES--DDKLGLTEKFTQFFAQRQIGMASLSAQ 127 (192)
T ss_dssp ECCCCCCCCSEEEEEEEEE--SCCTTHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCccCCceEEEEEEe--CCCccHHHHHHHHHHHcCCcHHHhhhh
Confidence 01346777777 468999999999999999999876664
|
| >2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=70.48 Aligned_cols=58 Identities=12% Similarity=0.316 Sum_probs=52.9
Q ss_pred eeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 386 LTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 386 Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
+..+...+++++|++.|.+|.+.+|+.+++|+.|++ |+|.||+ +||.+|||.|++++.
T Consensus 377 ~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~~--ini~mIsqg~Se~~Is~vV~~~d~ 436 (449)
T 2j0w_A 377 LCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLEP--FNIRMICYGASSHNLCFLVPGEDA 436 (449)
T ss_dssp HSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCTT--SCCCEEEESSCTTEEEEEEEGGGH
T ss_pred CCeEEEeCCeEEEEEECCCccccccHHHHHHHHHhC--CCeEEEEecCCCcEEEEEEeHHHH
Confidence 346888999999999999999999999999999966 9999998 899999999998874
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.068 Score=50.46 Aligned_cols=107 Identities=10% Similarity=0.121 Sum_probs=69.3
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE----ccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhh---e
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA----TSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIA---I 467 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is----tSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~---~ 467 (557)
...|+|.+. ++||+.+++...|+++|.||.-.. .....+.+.+......... .++.+.+.|.... .
T Consensus 5 ~~~ltv~~~---DrpGiva~vs~~La~~g~NI~da~q~~~~~~f~m~~~v~~~~~~~~~----~~~~l~~~L~~~~~~~~ 77 (195)
T 2nyi_A 5 SFVVSVAGS---DRVGIVHDFSWALKNISANVESSRMACLGGDFAMIVLVSLNAKDGKL----IQSALESALPGFQISTR 77 (195)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSSSSHH----HHHHHHHHSTTCEEEEE
T ss_pred EEEEEEEeC---CCCcHHHHHHHHHHHCCCCEEEEEeEEECCeEEEEEEEEecCccchh----HHHHHHHHHHHHHHhcC
Confidence 356777764 689999999999999999988653 2233334444322110000 1223333443221 0
Q ss_pred e---------ecccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEec
Q 008693 468 V---------NLLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQG 510 (557)
Q Consensus 468 i---------~~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqg 510 (557)
+ .......+|+|.| .+.||+++++.+.|+++|+||.-+.|.
T Consensus 78 ~~~~~~~~~~~~~~~~~iltv~g--~DrpGiva~Vt~~La~~g~nI~~~~~~ 127 (195)
T 2nyi_A 78 RASSVAERHVSPDTREYELYVEG--PDSEGIVEAVTAVLAKKGANIVELETE 127 (195)
T ss_dssp ECCCC----CCTTEEEEEEEEEE--ECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred CeEEEEeCCcCCCCcEEEEEEEe--CCCcCHHHHHHHHHHHcCCCEEEceee
Confidence 1 1123457899998 358999999999999999999988775
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.076 Score=47.27 Aligned_cols=46 Identities=22% Similarity=0.330 Sum_probs=36.9
Q ss_pred EEEecCccchhhHHHHHHHHHHhCCceEE-EEEc-cCceeEEEeCCch
Q 008693 399 DIVSTRMLGQYGFLAKVFSTFEDLGISVD-VVAT-SEVSLSLTLDPSK 444 (557)
Q Consensus 399 tI~~~~m~~~~g~la~If~~L~~~gI~Vd-~Ist-Se~sIS~~I~~~~ 444 (557)
++.+.+|.++||.++++|+.|+++||||+ ++++ ++..+++.++.++
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~~~~~~~~~i~~~d 120 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSN 120 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESC
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEccCCcEEEEEEeCC
Confidence 45555688999999999999999999994 5665 6777888876654
|
| >1zhv_A Hypothetical protein ATU0741; NESG, ATR8, structural genomics, PSI, protein struc initiative; 1.50A {Agrobacterium tumefaciens str} SCOP: d.58.18.8 d.58.18.8 | Back alignment and structure |
|---|
Probab=94.19 E-value=0.1 Score=46.45 Aligned_cols=90 Identities=14% Similarity=0.131 Sum_probs=69.2
Q ss_pred EEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEE
Q 008693 427 DVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQ 505 (557)
Q Consensus 427 d~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~ 505 (557)
..++.....+|++++.+.+. ..+........|.+.|. .....|+++.+...|+++||.+.
T Consensus 34 ~~is~t~eelSvV~~~~~~p-------------------~~~~~~~~wr~i~v~~~l~~~~vGilA~is~pLA~agIsif 94 (134)
T 1zhv_A 34 VSITRTDDELSIVCLIDRIP-------------------QDVRVDPGWSCFKFQGPFAFDETGIVLSVISPLSTNGIGIF 94 (134)
T ss_dssp CEEEECSSCEEEEEEGGGSC-------------------TTSEEEEEEEEEEECSCCCCSSCCHHHHHHHHHHTTTCCCE
T ss_pred EEEEEcCCeEEEEEehhhCc-------------------cCCccCCCeEEEEEecCCCccHHHHHHHHHHHHHhCCCCeE
Confidence 34555566777777664311 11244567788999886 45778999999999999999999
Q ss_pred EEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 506 MISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 506 ~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
.||+-.++. ++|++++.++|+++|.+..+.
T Consensus 95 ~iSty~tD~---IlVp~~~~~~Ai~aL~~~~~~ 124 (134)
T 1zhv_A 95 VVSTFDGDH---LLVRSNDLEKTADLLANAGHS 124 (134)
T ss_dssp EEECSSCEE---EEEEGGGHHHHHHHHHHTTCE
T ss_pred EEEeccccE---EEEeHHHHHHHHHHHHHcCce
Confidence 999866665 799999999999999987653
|
| >1zvp_A Hypothetical protein VC0802; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 2.20A {Vibrio cholerae} SCOP: d.58.18.9 d.58.18.9 | Back alignment and structure |
|---|
Probab=94.02 E-value=0.14 Score=45.47 Aligned_cols=85 Identities=19% Similarity=0.196 Sum_probs=64.4
Q ss_pred EEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHhhhheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEE
Q 008693 428 VVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQM 506 (557)
Q Consensus 428 ~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~ 506 (557)
.+......+|++++.+.. .. ..+........|++.|. ...-.|+++.+...|+++||.+..
T Consensus 43 ~i~~t~eelSvV~~~~~a-----------------~~-~~l~~~~~wr~i~l~~~~~l~~vGi~a~is~~LA~agIsif~ 104 (133)
T 1zvp_A 43 ATFREPEGLTLVLEAEKA-----------------QQ-AGLESSALFSLITLTVHSSLEAVGLTAAFATKLAEHGISANV 104 (133)
T ss_dssp EEEEETTEEEEEEEHHHH-----------------HH-TTCCCCSCEEEEEEECCC--CCSCHHHHHHHHHHHTTCCCEE
T ss_pred EEEEcCCcEEEEEchHhc-----------------cc-cCCccCCCeEEEEEeccCCccHHHHHHHHHHHHHhCCCCcEE
Confidence 455555677888765321 00 12344567889999996 567789999999999999999999
Q ss_pred EEecCCceEEEEEEecccHHHHHHHHH
Q 008693 507 ISQGASKVNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 507 IsqgsSe~sIs~vV~~~d~~kAv~~LH 533 (557)
||+-.+++ ++|++++.++|+++|.
T Consensus 105 iSty~tDh---IlVp~~~~~~A~~~L~ 128 (133)
T 1zvp_A 105 IAGYYHDH---IFVQKEKAQQALQALG 128 (133)
T ss_dssp EECSSCEE---EEEEGGGHHHHHHHHT
T ss_pred EEeccccE---EEEehhHHHHHHHHHH
Confidence 99866666 8999999999999985
|
| >3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.00 E-value=5.5 Score=41.28 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=71.1
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccC----ceeEEEeCCchhh-hHHHHHHHHHHHHHHHhhhheee
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSE----VSLSLTLDPSKLW-SRELIQQELDHVVEELEKIAIVN 469 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe----~sIS~~I~~~~~~-~~~~~~~~l~~~~~~l~~~~~i~ 469 (557)
..+|++.+. ++||+.+++...|+++|+||.-+.+.. ....+.++-+... ..+.++++|..+-+++.-...+.
T Consensus 12 ~~~lt~~g~---Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~~f~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 88 (415)
T 3p96_A 12 SVLITVTGV---DQPGVTATLFEVLSRHGVELLNVEQVVIRHRLTLGVLVCCPADVADGPALRHDVEAAIRKVGLDVSIE 88 (415)
T ss_dssp EEEEEEEEE---CCTTHHHHHHHHHTTTTCEEEEEEEEEETTEEEEEEEEEECHHHHTSHHHHHHHHHHHHHTTCEEEEE
T ss_pred eEEEEEEcC---CCCCHHHHHHHHHHHCCCCEEEeeeEEECCEeEEEEEEEecCCcCCHHHHHHHHHHHHHHcCeEEEEE
Confidence 456888874 689999999999999999998876532 2222223222111 12334455555444443211111
Q ss_pred --------cccceeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEe
Q 008693 470 --------LLQHRSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQ 509 (557)
Q Consensus 470 --------~~~~~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isq 509 (557)
...+..++.++|.- ..++...++...+++.|+|+.-+..
T Consensus 89 ~~~~~~~~~~~~~~~~~llg~~-~~~~~~~~i~~~l~~~~~Ni~~l~~ 135 (415)
T 3p96_A 89 RSDDVPIIREPSTHTIFVLGRP-ITAAAFGAVAREVAALGVNIDLIRG 135 (415)
T ss_dssp ECSSSCSSCCCCSEEEEEEESS-CCHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred ECCcccccCCCCcEEEEEEeCC-CCHHHHHHHHHHHHHcCCCccceee
Confidence 12356789999951 2678999999999999999876554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 557 | ||||
| d2cdqa1 | 304 | c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Ar | 3e-96 | |
| d2hmfa1 | 302 | c.73.1.3 (A:2-303) Aspartokinase {Methanococcus ja | 2e-69 | |
| d2j0wa1 | 292 | c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli | 2e-67 | |
| d2cdqa2 | 91 | d.58.18.10 (A:329-419) Aspartokinase {Thale cress | 4e-23 | |
| d2cdqa2 | 91 | d.58.18.10 (A:329-419) Aspartokinase {Thale cress | 2e-07 | |
| d2cdqa3 | 75 | d.58.18.10 (A:420-494) Aspartokinase {Thale cress | 2e-19 | |
| d2hmfa2 | 67 | d.58.18.10 (A:404-470) Aspartokinase {Methanococcu | 9e-17 | |
| d2hmfa2 | 67 | d.58.18.10 (A:404-470) Aspartokinase {Methanococcu | 5e-04 | |
| d2j0wa2 | 91 | d.58.18.10 (A:295-385) Aspartokinase {Escherichia | 3e-16 | |
| d2j0wa2 | 91 | d.58.18.10 (A:295-385) Aspartokinase {Escherichia | 4e-11 | |
| d2j0wa3 | 64 | d.58.18.10 (A:386-449) Aspartokinase {Escherichia | 1e-13 | |
| d2j0wa3 | 64 | d.58.18.10 (A:386-449) Aspartokinase {Escherichia | 0.001 | |
| d2hmfa3 | 100 | d.58.18.10 (A:304-403) Aspartokinase {Methanococcu | 3e-13 | |
| d2hmfa3 | 100 | d.58.18.10 (A:304-403) Aspartokinase {Methanococcu | 3e-07 | |
| d2a1fa1 | 236 | c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophi | 7e-12 | |
| d1ybda1 | 236 | c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseri | 7e-10 | |
| d2ij9a1 | 219 | c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeog | 8e-10 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 2e-06 | |
| d2brxa1 | 225 | c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococc | 0.002 |
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 293 bits (750), Expect = 3e-96
Identities = 251/304 (82%), Positives = 278/304 (91%)
Query: 79 KQLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCG 138
K +TCVMKFGGSS+ASAERM+EVA+LIL+FP E PVIVLSAMGKTTN LLLAGEKAVSCG
Sbjct: 1 KGITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCG 60
Query: 139 VTNISCIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV 198
V+N S I+ELS +K+LH RTV EL ID S+I T+LEELEQLLKGIAM+KELT R+RDYLV
Sbjct: 61 VSNASEIEELSIIKELHIRTVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLV 120
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
SFGEC+STRIFAAYLN IGVKARQYDAF+IGFITTDDFTN DILEATYPAVAKRL+ DW+
Sbjct: 121 SFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWM 180
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
D A+PIVTGFLGK W+T A+TTLGRGGSDLTATTIGKALGL+EIQVWKDVDGVLTCDP
Sbjct: 181 HDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPT 240
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
I+ A PVPYLTFDEAAELAYFGAQVLHPQSMRPAREG+IPVRVKNSYNP APGT+I ++
Sbjct: 241 IYKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKT 300
Query: 379 RDMS 382
RDM+
Sbjct: 301 RDMT 304
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 302 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 223 bits (570), Expect = 2e-69
Identities = 115/309 (37%), Positives = 178/309 (57%), Gaps = 17/309 (5%)
Query: 82 TCVMKFGGSSLASAERMREVAELILSFPNE--RPVIVLSAMGKTTNKLLLAGEKAVSCGV 139
T VMKFGG+S+ S ER+R VA+++ E V+V+SAM + TN L+ ++A+
Sbjct: 1 TTVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVR- 59
Query: 140 TNISCIDEL-SFVKDLHHRTVDELGID-------RSIIATHLEELEQLLKGIAMLKELTP 191
+I+ + + F+++ H++ ++E + II + +EELE++L G+A L ELTP
Sbjct: 60 -DIAKVGDFIKFIREKHYKAIEEAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTP 118
Query: 192 RSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAK 251
+SRDY++SFGE +S+ I + + +G K+ + + G IT ++F +A +
Sbjct: 119 KSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLL 178
Query: 252 RLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311
L + I V ITTLGRGGSD +A IG L I++W DV G
Sbjct: 179 PLLKE-----GIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSG 233
Query: 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAP 371
V T DP + P A+ +P L++ EA ELAYFGA+VLHP+++ PA E IP+ VKN++ P +
Sbjct: 234 VYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESE 293
Query: 372 GTLIRRSRD 380
GTLI +
Sbjct: 294 GTLITNDME 302
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 218 bits (555), Expect = 2e-67
Identities = 100/302 (33%), Positives = 151/302 (50%), Gaps = 18/302 (5%)
Query: 84 VMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNIS 143
V KFGG+S+A + M A+++LS N R ++VLSA TN L+ A++ G+
Sbjct: 4 VSKFGGTSVADFDAMNRSADIVLSDANVR-LVVLSASAGITNLLV-----ALAEGLEPGE 57
Query: 144 CIDELSFVKDLHHRTVDELGIDRSIIATHLEELEQLLKG-----IAMLKELTPRSRDYLV 198
++L ++++ ++ L EE+E+LL+ A +P D LV
Sbjct: 58 RFEKLDAIRNIQFAILERLRYPNV----IREEIERLLENITVLAEAAALATSPALTDELV 113
Query: 199 SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWI 258
S GE MST +F L + V+A+ +D + + A A +L
Sbjct: 114 SHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLN 173
Query: 259 TDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318
+ I GF+G + TTLGRGGSD TA + +AL + +W DV G+ T DP
Sbjct: 174 EG--LVITQGFIGSENKGR-TTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPR 230
Query: 319 IHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRS 378
+ AK + + F EAAE+A FGA+VLHP ++ PA DIPV V +S +P A GTL+
Sbjct: 231 VVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNK 290
Query: 379 RD 380
+
Sbjct: 291 TE 292
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 91.4 bits (227), Expect = 4e-23
Identities = 81/90 (90%), Positives = 87/90 (96%)
Query: 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDP 442
K++LTSIVLKRNVTMLDI STRMLGQ GFLAKVFS FE+LGISVDVVATSEVS+SLTLDP
Sbjct: 1 KSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDP 60
Query: 443 SKLWSRELIQQELDHVVEELEKIAIVNLLQ 472
SKLWSRELIQQELDHVVEELEKIA+VNLL+
Sbjct: 61 SKLWSRELIQQELDHVVEELEKIAVVNLLK 90
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 46.7 bits (111), Expect = 2e-07
Identities = 11/63 (17%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
+++ + + L K F + G++V +++ S+V+ISL ++ +
Sbjct: 14 TMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQ 71
Query: 534 ETF 536
E
Sbjct: 72 ELD 74
|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 75 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Score = 80.2 bits (198), Expect = 2e-19
Identities = 52/67 (77%), Positives = 58/67 (86%)
Query: 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
R+IISLIGNVQ SSLILE+AF VL GVNVQMISQGASKVNIS IVN+ EAE CV+ALH
Sbjct: 1 RAIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALH 60
Query: 534 ETFFESD 540
++FFES
Sbjct: 61 KSFFESG 67
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 72.4 bits (178), Expect = 9e-17
Identities = 27/65 (41%), Positives = 42/65 (64%), Gaps = 1/65 (1%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
+IS++G R + I K F + SG N++MI+QG+S+VNIS ++++ + CVR LH
Sbjct: 2 CVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLH 61
Query: 534 ETFFE 538
E F E
Sbjct: 62 EKFIE 66
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 67 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 36.6 bits (85), Expect = 5e-04
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445
V ++ +V M G G K+F+ + G ++ ++A +SEV++S +D L
Sbjct: 1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDL 53
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 71.8 bits (176), Expect = 3e-16
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 385 VLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444
+ ++ L+RN T+L + S ML GFLA+VF ISVD++ TSEVS++LTLD +
Sbjct: 4 LFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTG 63
Query: 445 LWSRELIQQELDHVVEELEKIAIVNL 470
+ ++ EL + V +
Sbjct: 64 S-TSTGDTLLTQSLLMELSALCRVEV 88
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 91 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 57.1 bits (138), Expect = 4e-11
Identities = 15/74 (20%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
++++L S L + F +L R ++V +I+ S+V+++L ++ + L
Sbjct: 15 TLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGSTSTGDTLL 72
Query: 534 ETFFESDLANLDCV 547
+L+ L V
Sbjct: 73 TQSLLMELSALCRV 86
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 64.0 bits (156), Expect = 1e-13
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Query: 475 SIISLIGNVQRSSL-ILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533
++++LIGN + + ++ F VL N++MI GAS N+ +V ++AEQ V+ LH
Sbjct: 2 ALVALIGNDLSKACGVGKEVFGVL--EPFNIRMICYGASSHNLCFLVPGEDAEQVVQKLH 59
Query: 534 ETFFE 538
FE
Sbjct: 60 SNLFE 64
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} Length = 64 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Score = 35.1 bits (81), Expect = 0.001
Identities = 7/50 (14%), Positives = 16/50 (32%)
Query: 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445
++ ++ + G +VF E I + S +L +
Sbjct: 2 ALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDA 51
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 63.7 bits (155), Expect = 3e-13
Identities = 21/72 (29%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 468 VNLLQHRSIISLIG-NVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAE 526
++ +++ ++I++ G + S + F+ L VNV +ISQG+S+ NISL+V++++ +
Sbjct: 9 ISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVD 68
Query: 527 QCVRALHETFFE 538
+ ++AL F +
Sbjct: 69 KALKALKREFGD 80
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} Length = 100 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Score = 46.7 bits (111), Expect = 3e-07
Identities = 21/105 (20%), Positives = 52/105 (49%), Gaps = 12/105 (11%)
Query: 381 MSKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVV--ATSEVSLSL 438
MS +++ +I +NV +++I M+G G A++F + ++V ++ +SE ++SL
Sbjct: 1 MSDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISL 60
Query: 439 TLDPSKLWSRELIQQELDHVVEELEKIAIVNLLQHRSIISLIGNV 483
+ ++++D ++ L++ + +LI +V
Sbjct: 61 VVS----------EEDVDKALKALKREFGDFGKKSFLNNNLIRDV 95
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Score = 63.1 bits (152), Expect = 7e-12
Identities = 43/230 (18%), Positives = 71/230 (30%), Gaps = 29/230 (12%)
Query: 160 DELGIDRSIIATHLEELEQLLK-----GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLN 214
D LGID +I+ E+++L++ + + R L G L
Sbjct: 21 DGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLA 79
Query: 215 KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW 274
+ D+ + + + +
Sbjct: 80 TVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLRE-----------KRVV 128
Query: 275 RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334
A T +D TA G + + VDGV CDP +P AK L++ E
Sbjct: 129 IFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEV 188
Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
+ +V+ + AR+ +P+RV N P A GT I
Sbjct: 189 IDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} Length = 236 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Score = 57.4 bits (137), Expect = 7e-10
Identities = 41/230 (17%), Positives = 68/230 (29%), Gaps = 29/230 (12%)
Query: 160 DELGIDRSIIATHLEELEQLLK-----GIAMLKELTPRSRDYLVSFGECMSTRIFAAYLN 214
D GI+ I + E+ +++K GI + R + +
Sbjct: 20 DPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMAT 79
Query: 215 KIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAW 274
+ A + +G + +A+ I GK
Sbjct: 80 VMNALALKDAFETLGIK------ARVQSALSMQQIAETYARPKA------IQYLEEGKVV 127
Query: 275 RTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEA 334
A T +D A G + + +VDGV T DP P A +TFDEA
Sbjct: 128 IFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEA 187
Query: 335 AELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNA---------PGTLI 375
+V+ + RE + + V + GTL+
Sbjct: 188 LLK---NLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLV 234
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 56.8 bits (136), Expect = 8e-10
Identities = 34/223 (15%), Positives = 65/223 (29%), Gaps = 28/223 (12%)
Query: 167 SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAF 226
S+++ E++ + K I + + +V G+ I +A Y
Sbjct: 10 SVLSNESEKIREFAKTIESVAQQ--NQVFVVVGGGKLAREYIKSARELGASETFCDYIGI 67
Query: 227 DIGFITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGG 286
+ +A A V + + ++ G T
Sbjct: 68 AATRLNAMLLISAIPSAAKKVPVDFMEAEELSKLYRVVVMGG------------TFPGHT 115
Query: 287 SDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQ--- 343
+D TA + + + +VDGV + DP A L+ + E+ +
Sbjct: 116 TDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAG 175
Query: 344 ---VLHPQSMRPAREGDIPVRVKNSYNPN--------APGTLI 375
V+ + + I V N A GT+I
Sbjct: 176 TNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVI 218
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 46.9 bits (110), Expect = 2e-06
Identities = 23/103 (22%), Positives = 35/103 (33%), Gaps = 15/103 (14%)
Query: 288 DLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHP 347
D A + + L + V +VDGV T DP P AK + + +E E+ G +
Sbjct: 121 DAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGS 180
Query: 348 QSM------RPAREGDIPVRVKNSYNPN---------APGTLI 375
S+ + I V + GT I
Sbjct: 181 SSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTI 223
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} Length = 225 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Score = 37.7 bits (86), Expect = 0.002
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 4/53 (7%)
Query: 84 VMKFGGSSLA----SAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGE 132
V GGS L + ++E+A + + V V+ GK K + E
Sbjct: 4 VFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVGGGKLARKYIEVAE 56
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 557 | |||
| d2cdqa1 | 304 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 100.0 | |
| d2j0wa1 | 292 | Aspartokinase {Escherichia coli [TaxId: 562]} | 100.0 | |
| d2hmfa1 | 302 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 100.0 | |
| d2brxa1 | 225 | Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: | 99.96 | |
| d2a1fa1 | 236 | Uridylate kinase PyrH {Haemophilus influenzae [Tax | 99.94 | |
| d2ij9a1 | 219 | Uridylate kinase PyrH {Archaeoglobus fulgidus [Tax | 99.91 | |
| d2akoa1 | 250 | Glutamate 5-kinase {Campylobacter jejuni [TaxId: 1 | 99.9 | |
| d1ybda1 | 236 | Uridylate kinase PyrH {Neisseria meningitidis [Tax | 99.89 | |
| d1z9da1 | 238 | Uridylate kinase PyrH {Streptococcus pyogenes [Tax | 99.82 | |
| d2bufa1 | 300 | N-acetyl-l-glutamate kinase {Pseudomonas aeruginos | 99.78 | |
| d2btya1 | 282 | N-acetyl-l-glutamate kinase {Thermotoga maritima [ | 99.77 | |
| d2ap9a1 | 291 | N-acetyl-l-glutamate kinase {Mycobacterium tubercu | 99.76 | |
| d2hmfa2 | 67 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.66 | |
| d2cdqa3 | 75 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 99.62 | |
| d1e19a_ | 313 | Carbamate kinase {Archaeon Pyrococcus furiosus [Ta | 99.57 | |
| d2hmfa3 | 100 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.53 | |
| d1gs5a_ | 258 | N-acetyl-l-glutamate kinase {Escherichia coli [Tax | 99.49 | |
| d1b7ba_ | 307 | Carbamate kinase {Enterococcus faecium [TaxId: 135 | 99.48 | |
| d2j0wa3 | 64 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.47 | |
| d2cdqa2 | 91 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 99.4 | |
| d2j0wa2 | 91 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.17 | |
| d2hmfa3 | 100 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 99.1 | |
| d2j0wa2 | 91 | Aspartokinase {Escherichia coli [TaxId: 562]} | 99.06 | |
| d2cdqa2 | 91 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 98.92 | |
| d2hmfa2 | 67 | Aspartokinase {Methanococcus jannaschii [TaxId: 21 | 98.57 | |
| d2cdqa3 | 75 | Aspartokinase {Thale cress (Arabidopsis thaliana) | 98.19 | |
| d2j0wa3 | 64 | Aspartokinase {Escherichia coli [TaxId: 562]} | 98.16 | |
| d1zhva2 | 66 | Hypothetical protein Atu0741 {Agrobacterium tumefa | 95.75 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 93.9 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 93.75 | |
| d1zvpa2 | 64 | Hypothetical protein VC0802 {Vibrio cholerae [TaxI | 93.07 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 89.45 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 89.32 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 89.23 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 88.66 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 88.49 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 87.54 | |
| d1zhva2 | 66 | Hypothetical protein Atu0741 {Agrobacterium tumefa | 84.6 | |
| d1zvpa2 | 64 | Hypothetical protein VC0802 {Vibrio cholerae [TaxI | 83.39 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 83.2 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 82.08 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 81.84 |
| >d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=100.00 E-value=4.4e-76 Score=604.02 Aligned_cols=301 Identities=83% Similarity=1.264 Sum_probs=279.5
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTV 159 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~ 159 (557)
.+.+|+|||||||+|++++++|+++|++..+.++|||||||||+||.|+++++.+.+.+..+..+.+.|+.++++|.+++
T Consensus 2 ~~~~V~KFGGTSv~~~~~i~~v~~iI~~~~~~~~vVVVSA~ggvTd~Ll~~~~~a~~~~~~~~~~~~~l~~i~~~h~~~~ 81 (304)
T d2cdqa1 2 GITCVMKFGGSSVASAERMKEVADLILTFPEESPVIVLSAMGKTTNNLLLAGEKAVSCGVSNASEIEELSIIKELHIRTV 81 (304)
T ss_dssp CCCEEEEECTGGGSSHHHHHHHHHHHHHCTTCCEEEEECCSTTHHHHHHHHHHHHTTTCTTTGGGCHHHHHHHHHHHHHH
T ss_pred CCeEEEeeCccccCCHHHHHHHHHHHHhcCCCCcEEEEeCCCCChHHHHHHHHHHHhcchhhhhhhhHHHHHHHHHHHHH
Confidence 46789999999999999999999999887667889999999999999999999888776666667778999999999999
Q ss_pred HHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCCc
Q 008693 160 DELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNA 239 (557)
Q Consensus 160 ~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~a 239 (557)
++|..+.+.+.+.+++|+++++++..+++++++.+|+|+|+||+||+.+++++|+++|+++.++|+++++++|+++|+++
T Consensus 82 ~~l~~~~~~~~~~~~~l~~~l~~i~~~~~~s~~~~D~ils~GE~lSa~ll~~~L~~~gi~a~~~d~~~~~iit~~~~~~a 161 (304)
T d2cdqa1 82 KELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNG 161 (304)
T ss_dssp HHHTCCSHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTC
T ss_pred HHhccchhHHHHHHHHHHHHHhhhccccccchhhHHHHHHhHHHHHHHHHHHHHHHcCCceEEEeecccccccccccccc
Confidence 99999988999999999999999999999999999999999999999999999999999999999999989999999999
Q ss_pred eeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCC
Q 008693 240 DILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNI 319 (557)
Q Consensus 240 ~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~ 319 (557)
++...+.....++....+++++.|||++||+|.+.++|++||||||||||||+++|.+|+|++++||||||||||+|||+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~v~vv~Gfig~~~~~G~~ttLGRgGSD~TAa~la~~l~A~~~~iwtDV~Gi~taDPr~ 241 (304)
T d2cdqa1 162 DILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTI 241 (304)
T ss_dssp CBCTTHHHHHHHHHHHHHHHSCCEEEEESSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTT
T ss_pred cccccchhhhHHHHhhhhhccCcEEEeeccccccCcCCceeeeccCccccHHHHHHHHhCchHHHHhcCcchheeccccc
Confidence 98766655554444444567788999999999863479999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCCC
Q 008693 320 HPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSRD 380 (557)
Q Consensus 320 v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~~ 380 (557)
+|+|++|++|||+||+||+++||+||||+|++|+++++|||+|+|+|+|+.+||+|+++.+
T Consensus 242 v~~a~~i~~lsy~EA~ela~~GakvlHp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~~ 302 (304)
T d2cdqa1 242 YKRATPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGEIPVRVKNSYNPKAPGTIITKTRD 302 (304)
T ss_dssp CTTCCBCCEEEHHHHHHHHHHHSSCCCHHHHHHHHHHTCCEEEEETTSTTSCCEEEESCCC
T ss_pred cCCceEcCccCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCCCCCCEEeCCCC
Confidence 9999999999999999999999999999999999999999999999999999999997764
|
| >d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.4e-71 Score=566.11 Aligned_cols=287 Identities=35% Similarity=0.513 Sum_probs=252.1
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCCCCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFPNERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
.|+|+|||||||+|++++++|+++|.+. .++++||||||||+||.|+++++.+.++ +....++.++++|..+++
T Consensus 1 ~~iV~KFGGTSv~~~~~i~~v~~ii~~~-~~~~vVVVSA~~gvTd~L~~~~~~~~~~-----~~~~~l~~i~~~h~~~~~ 74 (292)
T d2j0wa1 1 EIVVSKFGGTSVADFDAMNRSADIVLSD-ANVRLVVLSASAGITNLLVALAEGLEPG-----ERFEKLDAIRNIQFAILE 74 (292)
T ss_dssp CCEEEEECSGGGSSHHHHHHHHHHHTSC-TTEEEEEECCCTTHHHHHHHHTTCCCHH-----HHHHHHHHHHHHHHHHHT
T ss_pred CeEEEeeCccccCCHHHHHHHHHHHHhc-CCCeEEEEeCCCCCHHHHHHHHHhhccC-----CCHHHHHHHHHHHHHHHH
Confidence 3799999999999999999999999864 3578999999999999999987754332 345678999999999999
Q ss_pred HhCCCH---HHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCC
Q 008693 161 ELGIDR---SIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFT 237 (557)
Q Consensus 161 ~l~~~~---~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~ 237 (557)
++..+. +.+++++++|+.+++.+.. +++++.+|+|+|+||+||+.||+++|+++|+++.++|++++ +++++.++
T Consensus 75 ~l~~~~~~~~~l~~~~~~l~~l~~~~~~--~~s~~~~d~Ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~-i~t~~~~~ 151 (292)
T d2j0wa1 75 RLRYPNVIREEIERLLENITVLAEAAAL--ATSPALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKV-MRTNDRFG 151 (292)
T ss_dssp TSSSTHHHHHHHHHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGT-CBBCSCTT
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHhhhc--ccChHHHHHHHhhhHHHhHHHHHHHHHhcCCCccccchhhe-eecCCccc
Confidence 987654 3577788888888887653 77999999999999999999999999999999999999998 88889999
Q ss_pred Cceeeecch-HHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCC
Q 008693 238 NADILEATY-PAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (557)
Q Consensus 238 ~a~i~~~~~-~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taD 316 (557)
++.+..... +....++.+. ++. .+||+|||+|.+ ++|++||||||||||||+++|++|+|++++||||||||||+|
T Consensus 152 ~a~~~~~~~~~~~~~~~~~~-~~~-~i~Vv~GFig~~-~~G~~ttLGRgGSDytAa~~a~~l~A~~v~iwtDV~Gi~taD 228 (292)
T d2j0wa1 152 RAEPDIAALAELAALQLLPR-LNE-GLVITQGFIGSE-NKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTD 228 (292)
T ss_dssp SCCBCHHHHHHHHHHHTHHH-HHH-SEEEEESSEEEC-TTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSC
T ss_pred cccchhhhhhhhhhhhhhhh-hcc-cccccccccccc-cCCceEeeccCcccHHHHHHHHHhhcHHHHHhccCcceeech
Confidence 888754332 2233333332 223 589999999999 589999999999999999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCC
Q 008693 317 PNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR 379 (557)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~ 379 (557)
||++|+|++|++|||+||+||+++||+||||+|++||+++||||+|+|+|+|+.+||+|+++.
T Consensus 229 P~~v~~A~~i~~lsy~EA~ela~~GakVlhp~ti~p~~~~~Ipi~i~nt~~p~~~GT~I~~~~ 291 (292)
T d2j0wa1 229 PRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPAVRSDIPVFVGSSKDPRAGGTLVCNKT 291 (292)
T ss_dssp TTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHHHHHTCCEEEEESSCTTSCCEEEESCC
T ss_pred hhcCCCceEcceeCHHHHHHHHhCCccccCHHHHHHHHHcCCcEEEeeCCCCCCCCCeEecCC
Confidence 999999999999999999999999999999999999999999999999999999999998754
|
| >d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.5e-69 Score=551.35 Aligned_cols=291 Identities=41% Similarity=0.688 Sum_probs=262.9
Q ss_pred EEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHHHH
Q 008693 83 CVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRTVD 160 (557)
Q Consensus 83 ~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~~~ 160 (557)
.|+|||||||+|+++|++|+++|.+.. +.++|||||||||+||.|+++++.+..+.. ...+.+.++.++++|..+++
T Consensus 2 tV~KFGGTSvadae~i~~V~~II~~~~~~~~~~vVVVSA~ggvTn~L~~~~~~a~~~~~-~~~~~~~l~~i~~~h~~~i~ 80 (302)
T d2hmfa1 2 TVMKFGGTSVGSGERIRHVAKIVTKRKKEDDDVVVVVSAMSEVTNALVEISQQALDVRD-IAKVGDFIKFIREKHYKAIE 80 (302)
T ss_dssp EEEEECTGGGSSHHHHHHHHHHHHHHHHHCSCEEEEECCCTTHHHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHhcCCCEEEEEeCCCCChhHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999997642 457899999999999999999988765422 23456779999999999999
Q ss_pred HhCCCHH-------HHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEe
Q 008693 161 ELGIDRS-------IIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITT 233 (557)
Q Consensus 161 ~l~~~~~-------~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~ 233 (557)
+|..+.+ .++.++++|+++++++..+++++++.+|+|+++||+||+.||+++|+++|+++.++|+++++++++
T Consensus 81 ~l~~~~~~~~~~~~~i~~~l~~L~~~l~~~~~~~e~~~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~i~t~ 160 (302)
T d2hmfa1 81 EAIKSEEIKEEVKKIIDSRIEELEKVLIGVAYLGELTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITD 160 (302)
T ss_dssp HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHTHHHHHHHHHHHHHHHHTTCCEEEECTTTTTEEEC
T ss_pred HHhccHhHHHHHHHHHHHHHHHHHHHHHHhhhcccCCHHHHHHHhhhhhhHHhHHHHHHHHHcCCceEEeeccccccccC
Confidence 9986642 488889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccc
Q 008693 234 DDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVL 313 (557)
Q Consensus 234 ~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ 313 (557)
+.++++.+...... +++.+ ++.++.|||+|||+|.+ ++|+++|||||||||||+++|.+|+|+++++||||||||
T Consensus 161 ~~~~~a~~~~~~~~---~~l~~-~~~~~~v~Vv~GFig~~-~~G~~ttLgRgGSD~tA~~la~~l~A~~~~i~tdv~gi~ 235 (302)
T d2hmfa1 161 NNFGSARVKRLEVK---ERLLP-LLKEGIIPVVTGFIGTT-EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVY 235 (302)
T ss_dssp SCTTSCCEEEECHH---HHHHH-HHHTTCEEEEESSEEEC-TTCCEEECCTTTHHHHHHHHHHHHTCSEEEEEESSSSCB
T ss_pred CccchhhhhhhhhH---HHHHH-HHhcCCeEEeecccccC-CCCCEEEEeccCcccHHHHHHHHhccHHHHHHhccchhc
Confidence 99999888654432 22322 24567899999999999 599999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCCCCCeeEecCC
Q 008693 314 TCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPNAPGTLIRRSR 379 (557)
Q Consensus 314 taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~~~GT~I~~~~ 379 (557)
|+||+++|+|+++++|||+||.||+++|++||||+|+.||+++|||++|+|+|+|+.+||+|+++.
T Consensus 236 ~~dP~~~~~a~~~~~~~y~ea~eLa~~g~~v~h~~~~~~~~~~~i~i~v~~~~~~~~~gT~i~~~~ 301 (302)
T d2hmfa1 236 TTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNTFEPESEGTLITNDM 301 (302)
T ss_dssp SSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHHHTTCCEEEEETTSTTSCCEEEESCC
T ss_pred cchhhcCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHcCCCEEEeeCCCCCCCCCEEcCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998753
|
| >d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.96 E-value=2.7e-29 Score=245.12 Aligned_cols=204 Identities=21% Similarity=0.264 Sum_probs=152.7
Q ss_pred eEEEEecccccC----CHHHHHHHHHHHHcCCC-CccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLA----SAERMREVAELILSFPN-ERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHH 156 (557)
Q Consensus 82 ~~V~KFGGsSv~----~~~~~~~va~iI~~~~~-~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~ 156 (557)
.+|+|||||++. +.+.++++++.|.+..+ .+.+||+| +|.+++.+.+.
T Consensus 2 rIViKiGGs~l~~~~~~~~~i~~l~~~I~~l~~~~~~viV~g-gG~~~~~~~~~-------------------------- 54 (225)
T d2brxa1 2 RIVFDIGGSVLVPENPDIDFIKEIAYQLTKVSEDHEVAVVVG-GGKLARKYIEV-------------------------- 54 (225)
T ss_dssp EEEEEECHHHHCSSSCCHHHHHHHHHHHHHHHHHSEEEEEEC-CHHHHHHHHHH--------------------------
T ss_pred eEEEEeehhhcCCCCCCHHHHHHHHHHHHHHHcCCcEEEEEC-ccHHHHHHHHh--------------------------
Confidence 478999999995 56789999998886543 34455554 55554433322
Q ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCC
Q 008693 157 RTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDF 236 (557)
Q Consensus 157 ~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~ 236 (557)
...++ .++...|++...++++++.++...|++.|++...-+
T Consensus 55 --~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~------------ 95 (225)
T d2brxa1 55 --AEKFN-------------------------SSETFKDFIGIQITRANAMLLIAALREKAYPVVVED------------ 95 (225)
T ss_dssp --HHTTT-------------------------CCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSCBCS------------
T ss_pred --hhhcc-------------------------hhhHHHHHhhhhHHHHHHHHHHHHHHhhhccccccc------------
Confidence 12222 234556777788899999999999999988742211
Q ss_pred CCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCC
Q 008693 237 TNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCD 316 (557)
Q Consensus 237 ~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taD 316 (557)
+....+ +++.+.|||+.+... + +.+|++|+++|.+|+|++|++|||||||||+|
T Consensus 96 ---------~~~~~~-----~l~~~~ipv~~~~~~-----~-------~~~D~lAa~lA~~l~Ad~lii~TDVdGVyt~d 149 (225)
T d2brxa1 96 ---------FWEAWK-----AVQLKKIPVMGGTHP-----G-------HTTDAVAALLAEFLKADLLVVITNVDGVYTAD 149 (225)
T ss_dssp ---------HHHHHH-----HHHTTCBCEECCCST-----T-------CCHHHHHHHHHHHTTCSEEEEECSSSSCBSSC
T ss_pred ---------HHHHHH-----HHHhcccccccCCCC-----C-------cchhHHHHHHHHHhCchhhhhhhhhhhhhhcc
Confidence 111111 234678999866321 1 12899999999999999999999999999999
Q ss_pred CCCCCCCccccccCHHHHHHHHHcCCC------cchHhHHHHHHhCCCCEEEecCCCC---------CCCCeeEec
Q 008693 317 PNIHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIRR 377 (557)
Q Consensus 317 P~~v~~a~~i~~ls~~Ea~eLa~~Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~~ 377 (557)
|+.+|+|++|++++|+|+.+++..|.. ++++.|++.|+++|||++|.|+++| +..||+|.|
T Consensus 150 P~~~~~Ak~i~~i~~~e~~~~~~~~~~~~g~gg~~~k~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~ge~~GT~i~P 225 (225)
T d2brxa1 150 PKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 225 (225)
T ss_dssp TTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred cccccccccceEEecchHHHHhccCccccCCCCcccHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCCcEecC
Confidence 999999999999999999999998765 6778899999999999999999887 568999964
|
| >d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Haemophilus influenzae [TaxId: 727]
Probab=99.94 E-value=3.5e-25 Score=216.30 Aligned_cols=212 Identities=22% Similarity=0.235 Sum_probs=140.0
Q ss_pred ceEEEEecccccC-------CHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHH
Q 008693 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFV 151 (557)
Q Consensus 81 ~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i 151 (557)
+.+|+||||||+. +.++++++++.|.+.. +...++|+|++++.....+...
T Consensus 6 kRIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vivVssg~~~~~~~~l~~~-------------------- 65 (236)
T d2a1fa1 6 KRILLKLSGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKA-------------------- 65 (236)
T ss_dssp SEEEEEECGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHT--------------------
T ss_pred cEEEEEEccceecCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecccccchhhhhhhc--------------------
Confidence 4599999999998 6789999999998753 2456677777666554333210
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEE
Q 008693 152 KDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFI 231 (557)
Q Consensus 152 ~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~ii 231 (557)
..+....+..........+.+++..+.............
T Consensus 66 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 104 (236)
T d2a1fa1 66 ------------------------------------GMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF----- 104 (236)
T ss_dssp ------------------------------------TCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESS-----
T ss_pred ------------------------------------CCCchhhHHHHHHHHHHHHHHHHHHHHhhccccchhhhh-----
Confidence 001112222223333455555665566655554333221
Q ss_pred EecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 232 TTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 232 t~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
.............+.. ..+.+.++++.+. ..+.+|++|.+|+++|.+++|+.|+|||||||
T Consensus 105 ----~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~~dnD~laa~vA~~~~Ad~lii~TDVdG 165 (236)
T d2a1fa1 105 ----QLNGICDTYNWSEAIK-----MLREKRVVIFSAG----------TGNPFFTTDSTACLRGIEIEADVVLKATKVDG 165 (236)
T ss_dssp ----CCTTTSEECCHHHHHH-----HHHTTCEEEEEST----------TSCSSCCHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred ----hhhhhHHHhhhhhhhh-----hhhhccccccccc----------ccCCCCCCcHHHHHHHHHhchhHHHHhhcccc
Confidence 1111111112222211 1245566666442 12356789999999999999999999999999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCCC---------CCCeeE
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPN---------APGTLI 375 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p~---------~~GT~I 375 (557)
|||+||+.+|+|+++++++|+|+.+. |++++||+|++.|+++|||++|.|+++|+ .+||+|
T Consensus 166 vyt~dP~~~~~A~~i~~i~~~e~l~~---G~~v~k~~Aa~~a~~~gi~v~I~ng~~~~~l~~~l~Ge~~GTlI 235 (236)
T d2a1fa1 166 VYDCDPAKNPDAKLYKNLSYAEVIDK---ELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235 (236)
T ss_dssp CBCC-------CCBCSEECHHHHHHT---TCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEE
T ss_pred cccccccccccccccccccHHHHHhc---CCceeHHHHHHHHHHCCCeEEEEeCCCCcHHHHHHcCCCCccee
Confidence 99999999999999999999998774 99999999999999999999999999984 579998
|
| >d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.91 E-value=8.8e-25 Score=211.82 Aligned_cols=203 Identities=20% Similarity=0.257 Sum_probs=147.0
Q ss_pred ceEEEEecccccCC-HHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLAS-AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~-~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
|.+|.|||||++.+ .+.++++++.|.+.. +++.+||||+ |.+.. .|...
T Consensus 1 MrIViKiGgs~l~~~~~~i~~la~~i~~l~~~~~~vIVvsg-G~~ar----------------------------~~~~~ 51 (219)
T d2ij9a1 1 MKVVLSLGGSVLSNESEKIREFAKTIESVAQQNQVFVVVGG-GKLAR----------------------------EYIKS 51 (219)
T ss_dssp CEEEEEECSSTTTTCHHHHHHHHHHHHHHHHHSEEEEEECC-HHHHH----------------------------HHHHH
T ss_pred CEEEEEecccccCCcHHHHHHHHHHHHHHHcCCcEEEEECC-Ccccc----------------------------chhhh
Confidence 35789999999964 788999999998753 3567788886 21111 12223
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecCCCC
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTN 238 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~~~~ 238 (557)
+.+++. ++...+++...+..+++.++...|...|.+..
T Consensus 52 ~~~~~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------- 89 (219)
T d2ij9a1 52 ARELGA-------------------------SETFCDYIGIAATRLNAMLLISAIPSAAKKVP----------------- 89 (219)
T ss_dssp HHHTTC-------------------------CHHHHHHHHHHHHHHHHHHHHHHCTTBCSSCC-----------------
T ss_pred hhhcCc-------------------------cHHHHHHHHHHHHHhhHHHHHHHhhhccchhh-----------------
Confidence 333433 34455666667777888877776666554320
Q ss_pred ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCC
Q 008693 239 ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPN 318 (557)
Q Consensus 239 a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~ 318 (557)
..+....+ +++.+.+||..|+++. +.+|++|+++|..++||.|++|||||||||+||+
T Consensus 90 -----~~~~~~~~-----l~~~~~v~v~~~~~~~------------~stD~laa~vA~~l~Ad~liilTDVDGvYt~dP~ 147 (219)
T d2ij9a1 90 -----VDFMEAEE-----LSKLYRVVVMGGTFPG------------HTTDATAALLAEFIKADVFINATNVDGVYSADPK 147 (219)
T ss_dssp -----SSHHHHHH-----HHTTCSEEEECCCSSS------------SCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCS
T ss_pred -----HHHHHHHH-----HhccCCceEECCCCCC------------CcccHHHHHHHHHcCchHhhhccCcccccccccc
Confidence 11122221 2356778988775431 2379999999999999999999999999999999
Q ss_pred CCCCCccccccCHHHHHHHHHcCCC------cchHhHHHHHHhCCCCEEEecCCC--------CCCCCeeEe
Q 008693 319 IHPHAKPVPYLTFDEAAELAYFGAQ------VLHPQSMRPAREGDIPVRVKNSYN--------PNAPGTLIR 376 (557)
Q Consensus 319 ~v~~a~~i~~ls~~Ea~eLa~~Ga~------vlhp~a~~~a~~~~Ipv~I~n~~~--------p~~~GT~I~ 376 (557)
.+|+|++|+++||+|+.+++..|.. ++++.|++.|+++|||++|.|... .+..||+|+
T Consensus 148 ~~~~A~~i~~is~~e~~~~~~~~~~~~~gg~~~k~~Aa~~a~~~gi~~~I~~g~~~ni~~~l~Ge~vGT~Is 219 (219)
T d2ij9a1 148 SDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILGTPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp SSSSCCBCSEECHHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEECCHHHHHHHHTTCCCSEEEC
T ss_pred cCcccccccccCHHHHHHHhhccCccCCCCCcchHHHHHHHHHcCCcEEEecCCCcHHHHHHCCCCCceEeC
Confidence 9999999999999999998765443 899999999999999999988642 145799884
|
| >d2akoa1 c.73.1.3 (A:2-251) Glutamate 5-kinase {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Glutamate 5-kinase species: Campylobacter jejuni [TaxId: 197]
Probab=99.90 E-value=1.8e-24 Score=213.75 Aligned_cols=216 Identities=18% Similarity=0.254 Sum_probs=150.7
Q ss_pred eEEEEecccccCC-----HHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHH
Q 008693 82 TCVMKFGGSSLAS-----AERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLH 155 (557)
Q Consensus 82 ~~V~KFGGsSv~~-----~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~ 155 (557)
.+|.|||||++.+ .++++++++.|++.. +.+.+||+|+++. .+..
T Consensus 2 rIViKlGGs~it~k~~~~~~~l~~~~~~I~~l~~~~~~vIV~gGa~~-------~G~~---------------------- 52 (250)
T d2akoa1 2 RIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVTSAAIS-------AGHT---------------------- 52 (250)
T ss_dssp EEEEEECHHHHBCSSSBCHHHHHHHHHHHHHHHHHSEEEEEECCHHH-------HHHH----------------------
T ss_pred EEEEEeccCeeeCCCCcCHHHHHHHHHHHHHHHcCCeEEEEEcCccc-------cccc----------------------
Confidence 4899999999975 578888998887643 3456667664311 1110
Q ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC
Q 008693 156 HRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD 235 (557)
Q Consensus 156 ~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~ 235 (557)
.++.. .......+.+.+.||..+..++..+|...|+.+... +++...
T Consensus 53 -----~~~~~----------------------~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~~~~~~------l~~~~~ 99 (250)
T d2akoa1 53 -----KLDID----------------------RKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQI------LLTGKD 99 (250)
T ss_dssp -----HCCCC----------------------SSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEE------EECTGG
T ss_pred -----ccccc----------------------cchhhhhhhhhcccchhHHHHHHHHhhhcccccccc------cccccc
Confidence 01111 112233455678899999999999999999987432 333332
Q ss_pred CCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccC
Q 008693 236 FTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTC 315 (557)
Q Consensus 236 ~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~ta 315 (557)
+..... +....+.+. .+++.+.+||+.+- ..+.++.++++++|++|+++|..++|++|+++||||||||+
T Consensus 100 ~~~~~~----~~~~~~~~~-~~l~~~~ipv~~~~-----~~~~~~~~~~~~~D~~A~~lA~~~~a~~li~~tdVdGVyd~ 169 (250)
T d2akoa1 100 FDSRKA----TKHAKNAID-MMINLGILPIINEN-----DATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDK 169 (250)
T ss_dssp GGCHHH----HHHHHHHHH-HHHHTTCEEEEEEC-----TTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSS
T ss_pred hhhhhh----hhhhhHHHH-HHHHhCcccccccC-----ccccccccccccchhhHHHHHHhcccceeeeccCCCceeeC
Confidence 221111 112222232 34678889998662 13556778899999999999999999999999999999999
Q ss_pred CCCCCCCCccccccCH--HHHHHHHH-----cCCCcchHh--HHHHHHhCCCCEEEecCCCCC
Q 008693 316 DPNIHPHAKPVPYLTF--DEAAELAY-----FGAQVLHPQ--SMRPAREGDIPVRVKNSYNPN 369 (557)
Q Consensus 316 DP~~v~~a~~i~~ls~--~Ea~eLa~-----~Ga~vlhp~--a~~~a~~~~Ipv~I~n~~~p~ 369 (557)
||+.+|+|++|+++|| +|..+++. .|...|.|| ++..|+++|||++|.|.++|+
T Consensus 170 dP~~~~~Ak~i~~It~~~~~~~~~~~~~~s~~~tGGM~~Kl~aa~~~~~~gi~v~I~nG~~~~ 232 (250)
T d2akoa1 170 NPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLS 232 (250)
T ss_dssp CTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred CCcccccccchhhccccchHHhhhhcccCCCCCCCchHHHHHHHHHHHHCCCCEEEecCCCcc
Confidence 9999999999999998 55555543 234567775 788999999999999988873
|
| >d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Neisseria meningitidis [TaxId: 487]
Probab=99.89 E-value=1.8e-22 Score=196.26 Aligned_cols=214 Identities=20% Similarity=0.236 Sum_probs=144.7
Q ss_pred ceEEEEecccccC-------CHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHH
Q 008693 81 LTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVK 152 (557)
Q Consensus 81 ~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~ 152 (557)
+.+|.|+|||++. |.+.++++++.|.+.. ..+.|++||.++........
T Consensus 5 krIViKiGgs~l~~~~~~~i~~~~i~~la~~I~~l~~~g~~vviVssG~~~~~~~~~----------------------- 61 (236)
T d1ybda1 5 KRVLLKLSGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSA----------------------- 61 (236)
T ss_dssp SEEEEEECGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHH-----------------------
T ss_pred CEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeccccccccccc-----------------------
Confidence 3489999999997 5678999999998753 34455555543322111000
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEEEE
Q 008693 153 DLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFIT 232 (557)
Q Consensus 153 ~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit 232 (557)
.. ...+..........+......++...+...+......+...
T Consensus 62 -------~~-------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 104 (236)
T d1ybda1 62 -------QA-------------------------GSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALS----- 104 (236)
T ss_dssp -------HH-------------------------TTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSC-----
T ss_pred -------cc-------------------------cccccchhhHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhh-----
Confidence 00 01112222333334445555566666777777665543321
Q ss_pred ecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCcc
Q 008693 233 TDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGV 312 (557)
Q Consensus 233 ~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV 312 (557)
............... .++.+.++++... ..+..|++|..|+++|..++|+.++++||||||
T Consensus 105 ----~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~----------~~~~~gdnD~laa~vA~~~~ad~liilTdVdGv 165 (236)
T d1ybda1 105 ----MQQIAETYARPKAIQ-----YLEEGKVVIFAAG----------TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGV 165 (236)
T ss_dssp ----BSSSCEECCHHHHHH-----HHHTTCEEEEEST----------TSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSC
T ss_pred ----hhhhhhhHHHHHHHh-----hhccCceeccccc----------cccccccchHHHHHHHHHhCccceeeccCccch
Confidence 111111111222211 1234556665331 124567899999999999999999999999999
Q ss_pred ccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeeEe
Q 008693 313 LTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIR 376 (557)
Q Consensus 313 ~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~ 376 (557)
||.||+.+|+|+++++++|+|+.+ .|.++|+++|++.|+++|||++|.|+++| +..||+|.
T Consensus 166 y~~dP~~~~~a~~~~~~~~~e~~~---~g~~~m~~~Aa~~a~~~gi~v~I~ng~~~~~i~~~l~Ge~vGTlIh 235 (236)
T d1ybda1 166 YTADPKKDPSATRYETITFDEALL---KNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 235 (236)
T ss_dssp BSSCGGGCTTCCBCSEEEHHHHHH---TTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEE
T ss_pred hhccccccccceeeccccHHHHHh---cCchHHHHHHHHHHHHCCCcEEEEeCCCccHHHHHHcCCCCCcEeC
Confidence 999999999999999999998765 49999999999999999999999999998 46899984
|
| >d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: PyrH-like domain: Uridylate kinase PyrH species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.82 E-value=7.1e-19 Score=169.81 Aligned_cols=219 Identities=18% Similarity=0.188 Sum_probs=147.8
Q ss_pred CcceEEEEecccccC-------CHHHHHHHHHHHHcCC-CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHH
Q 008693 79 KQLTCVMKFGGSSLA-------SAERMREVAELILSFP-NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSF 150 (557)
Q Consensus 79 ~~~~~V~KFGGsSv~-------~~~~~~~va~iI~~~~-~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~ 150 (557)
+|+.+|.|+|||++. +.+.++++++.|.+.. +...|++||..+..-- ......
T Consensus 3 k~krIViKiGgs~lt~~~~~~l~~~~l~~ia~~I~~l~~~g~~Vv~v~~g~~~~~-~~~~~~------------------ 63 (238)
T d1z9da1 3 KYQRILIKLSGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWR-GEPAAD------------------ 63 (238)
T ss_dssp SCSEEEEEECGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCC-HHHHHH------------------
T ss_pred CCCEEEEEECcceecCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeccccccc-ceeccc------------------
Confidence 467799999999996 5678999999988753 3455666665443321 110000
Q ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHHcCCceEEeccceeEE
Q 008693 151 VKDLHHRTVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSFGECMSTRIFAAYLNKIGVKARQYDAFDIGF 230 (557)
Q Consensus 151 i~~~~~~~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~i 230 (557)
........++....+...+..+.+..+...|+..........
T Consensus 64 ------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-- 105 (238)
T d1z9da1 64 ------------------------------------AGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPM-- 105 (238)
T ss_dssp ------------------------------------HTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCB--
T ss_pred ------------------------------------cCCcchhHHHHHHHHHHHHHHHHHHHHhhCCccchhhhhhhh--
Confidence 011233334444556666777778888899988765543221
Q ss_pred EEecCCCCceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 231 ITTDDFTNADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 231 it~~~~~~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
.+ ... ...... .+.. .....+++..+... ....++.|..|+++|..++|+.++++||||
T Consensus 106 ----~~--~~~-~~~~~~---~i~~--~~~~~~~~~~~~~~---------~~~~~~~d~~~~~~a~~~~a~~li~~tdVd 164 (238)
T d1z9da1 106 ----QN--VAE-PYIRGR---ALRH--LEKNRIVVFGAGIG---------SPYFSTDTTAALRAAEIEADAILMAKNGVD 164 (238)
T ss_dssp ----TT--TBE-ECCHHH---HHHH--HHTTCEEEEESTTS---------CTTCCHHHHHHHHHHHTTCSEEEEEESSCC
T ss_pred ----HH--HHh-hhhHHH---HHhh--hccccccceeccee---------ccCCCCchHHHHHHHHHhhhhhhccccccc
Confidence 11 111 111111 1111 11222333322211 112345888899999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHhHHHHHHhCCCCEEEecCCCC---------CCCCeeEecC
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNP---------NAPGTLIRRS 378 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~a~~~a~~~~Ipv~I~n~~~p---------~~~GT~I~~~ 378 (557)
|+|++||+..++|++++.++++|..+ .|..+++++|++.++++|||++|.|+++| +..||+|+++
T Consensus 165 Gvy~~~P~~~~~a~~~~~~~~~~~~~---~g~~~~k~~Aa~~a~~~gi~v~I~nG~~p~~i~~~l~Ge~~GTlIt~~ 238 (238)
T d1z9da1 165 GVYNADPKKDANAVKFDELTHGEVIK---RGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 238 (238)
T ss_dssp SCBSSCTTTCTTCCBCSEEEHHHHHT---TTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred ceecccccccccchhhccccccchhc---cCcchhHHHHHHHHHHCCCcEEEEeCCCcchHHHHHCCCCCceEeccC
Confidence 99999999999999999999998654 48899999999999999999999999999 5689999863
|
| >d2bufa1 c.73.1.2 (A:2-301) N-acetyl-l-glutamate kinase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.78 E-value=2.2e-18 Score=174.24 Aligned_cols=235 Identities=18% Similarity=0.286 Sum_probs=165.4
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+++|.|+||+.+.+++.+..+++.|.... +.++|+|+++...+...|.+.+.
T Consensus 27 ktiVIKlGG~~l~~~~~~~~~~~dIa~L~~~G~~vViVhGgg~~i~~~l~~~gi-------------------------- 80 (300)
T d2bufa1 27 KTLVIKYGGNAMESEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSI-------------------------- 80 (300)
T ss_dssp CEEEEEECCTTTTSSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTC--------------------------
T ss_pred CEEEEEEChHHhCChhHHHHHHHHHHHHHHcCCcEEEecChHHHHHHHHHhccc--------------------------
Confidence 67999999999999888888888776542 34555555543344443333211
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHH-HhhchHHHHHHHHHHHHHcCCceEEeccceeEEEEecC--
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYL-VSFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD-- 235 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i-~s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~-- 235 (557)
+. ++.++.+ ..++...+.+ ..++..++..++ +.|++.|+++..+++.+..++....
T Consensus 81 ------~~-----------~~~~g~R---vT~~~~l~~~~~~~~g~vn~~lv-~~l~~~g~~a~~l~~~d~~~i~~~~~~ 139 (300)
T d2bufa1 81 ------ES-----------HFIDGMR---VTDAATMDVVEMVLGGQVNKDIV-NLINRHGGSAIGLTGKDAELIRAKKLT 139 (300)
T ss_dssp ------CC-----------CBSSSSB---CBCHHHHHHHHHHHHHTHHHHHH-HHHHHTTCCEEEEEETGGGCEEEEECC
T ss_pred ------Cc-----------eecCCcc---cccchhHHHHHHHHHhHHHHHHH-HHHHhcCCcccccCCCccceEEeeccc
Confidence 10 0112222 2233443333 233345677655 4689999999999988876665432
Q ss_pred ---------------CCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcC
Q 008693 236 ---------------FTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALG 299 (557)
Q Consensus 236 ---------------~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~ 299 (557)
++. .++..++.+.+. .+++.+.|||+++ +|.+ .+|+..+++ +|..|+.+|.+|+
T Consensus 140 ~~~~~~~~~~~~~id~g~~G~v~~v~~~~i~-----~ll~~g~Ipvis~-~~~~-~~G~~~nin---~D~~Aa~lA~~L~ 209 (300)
T d2bufa1 140 VTRQTPEMTKPEIIDIGHVGEVTGVNVGLLN-----MLVKGDFIPVIAP-IGVG-SNGESYNIN---ADLVAGKVAEALK 209 (300)
T ss_dssp CCCC--------CCCCBSBEEEEEECHHHHH-----HHHHTTCEEEEEE-EEEC-TTSCEEECC---HHHHHHHHHHHHT
T ss_pred ccccCcccccccccccCcccceeecchhHHH-----HHhcCCCeEEecc-cccC-cccchhccc---HHHHHHHHHHHcC
Confidence 111 233344544333 3467899999988 6777 489999998 9999999999999
Q ss_pred cCcEEEeeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHh--HHHHHHhCCCC-EEEecCCCC------
Q 008693 300 LQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNP------ 368 (557)
Q Consensus 300 A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p------ 368 (557)
|++++|+|||||||+.+ .+++++++.+|+.++...|. ..|-|| ++..|.++|++ ++|.|...|
T Consensus 210 AdkLI~Ltdv~Gv~~~~------g~~~~~l~~~~~~~li~~~~i~gGM~~Kl~aa~~a~~~Gv~rv~Ii~g~~~~~ll~e 283 (300)
T d2bufa1 210 AEKLMLLTNIAGLMDKQ------GQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLE 283 (300)
T ss_dssp CSEEEEEESSSCCBCTT------SCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHH
T ss_pred CCeEEEEcCCCccccCC------CcchhhccHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHHHH
Confidence 99999999999999765 45689999999999988765 467787 66778899997 999987666
Q ss_pred ----CCCCeeEecC
Q 008693 369 ----NAPGTLIRRS 378 (557)
Q Consensus 369 ----~~~GT~I~~~ 378 (557)
++.||.|+++
T Consensus 284 Lft~~g~GT~I~~~ 297 (300)
T d2bufa1 284 IFTDSGVGTLISNR 297 (300)
T ss_dssp HSSTTCCSEEEECC
T ss_pred HcCCCCceeEEecC
Confidence 3579999875
|
| >d2btya1 c.73.1.2 (A:1-282) N-acetyl-l-glutamate kinase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=5.8e-18 Score=169.58 Aligned_cols=234 Identities=22% Similarity=0.272 Sum_probs=161.0
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+.+|.|+||+.+.+++.++++++.|.... +.++|+|+++....+..|.+..... ..
T Consensus 22 k~iVIKlGgsvi~~~~~~~~l~~dIa~L~~~G~~iVlVhGg~~~~~~~l~~~~i~~---~~------------------- 79 (282)
T d2btya1 22 KTFVIKFGGSAMKQENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEP---VF------------------- 79 (282)
T ss_dssp CEEEEEECSHHHHSHHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCC---CB-------------------
T ss_pred CEEEEEECchHhCChhHHHHHHHHHHHHHHCCCeEEEEECCCccchhhHHHcCCcc---ee-------------------
Confidence 56999999999999999999998887643 4455555554444444433321100 00
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHh-hchHHHHHHHHHHHHHcCCceEEeccceeEEEEec---
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVS-FGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--- 234 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s-~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~--- 234 (557)
..+. +..+.+..+.+.. +...++.. +...|++.|+++..+++.+....+..
T Consensus 80 ---------------------~~~~---~~t~~~~~~~~~~~~~~~~n~~-~~~~l~~~g~~a~~l~~~~~~~~~~~~~~ 134 (282)
T d2btya1 80 ---------------------KNGH---RVTDEKTMEIVEMVLVGKINKE-IVMNLNLHGGRAVGICGKDSKLIVAEKET 134 (282)
T ss_dssp ---------------------SSSS---BCBCHHHHHHHHHHHHHTHHHH-HHHHHHTTTCCEEEEETTGGGSEEEEECC
T ss_pred ---------------------ccCc---cccchhhHHHHHHHHhchhhHH-HHHHHHhcCCCeeeeeccccceeEecccc
Confidence 0000 1112233333322 12234444 55679999999999988765544432
Q ss_pred ---CCCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCC
Q 008693 235 ---DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVD 310 (557)
Q Consensus 235 ---~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVd 310 (557)
+++. .++..++.+.+.. +++++.|||++++ +.+ .+|++.+++ +|..|+.+|.+|+|++++++||||
T Consensus 135 ~~~d~~~~g~~~~v~~~~i~~-----lL~~~~ipvi~~~-~~~-~~g~~~nl~---~d~~aa~iA~~l~AdkLI~ltdv~ 204 (282)
T d2btya1 135 KHGDIGYVGKVKKVNPEILHA-----LIENDYIPVIAPV-GIG-EDGHSYNIN---ADTAAAEIAKSLMAEKLILLTDVD 204 (282)
T ss_dssp TTCCCBSBEEEEEECTHHHHH-----HHHTTCEEEEESE-EEC-SSSCEEECC---HHHHHHHHHHHHTCSEEEEEESSS
T ss_pred ccccccccccccccChHHHHH-----HHhCCCceeecCc-ccC-Ccceeeecc---ccchhHHHhhhcCCceeEEecccc
Confidence 2222 4555566655543 3468899999995 666 479999887 999999999999999999999999
Q ss_pred ccccCCCCCCCCCccccccCHHHHHHHHHcCC--CcchHh--HHHHHHhCCCC-EEEecCCCCC----------CCCeeE
Q 008693 311 GVLTCDPNIHPHAKPVPYLTFDEAAELAYFGA--QVLHPQ--SMRPAREGDIP-VRVKNSYNPN----------APGTLI 375 (557)
Q Consensus 311 GV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga--~vlhp~--a~~~a~~~~Ip-v~I~n~~~p~----------~~GT~I 375 (557)
|+|+ +.+++++++.+|+.++...|. ..|-|| ++..|.++|+| ++|.|...|+ +.||+|
T Consensus 205 Gl~~-------d~~~i~~~~~~~~~~~~~~~~~tgGM~~Kl~aA~~A~~~GV~~v~I~~g~~~~~ll~elft~~g~GT~I 277 (282)
T d2btya1 205 GVLK-------DGKLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMI 277 (282)
T ss_dssp SCEE-------TTEECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEE
T ss_pred ceec-------CccccccCCHHHHHHHHHcCCcCchHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhCCCCceEEE
Confidence 9995 357899999999999987543 456665 67788899998 9999876663 579999
Q ss_pred ecC
Q 008693 376 RRS 378 (557)
Q Consensus 376 ~~~ 378 (557)
++.
T Consensus 278 ~~~ 280 (282)
T d2btya1 278 KEL 280 (282)
T ss_dssp CCC
T ss_pred EeC
Confidence 864
|
| >d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.76 E-value=5.2e-18 Score=170.61 Aligned_cols=237 Identities=20% Similarity=0.242 Sum_probs=163.4
Q ss_pred ceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHHH
Q 008693 81 LTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHRT 158 (557)
Q Consensus 81 ~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~~ 158 (557)
+.+|.|+||+.+.+++.++.+++.|.... +.++|+|.++.....+.|.+..... .
T Consensus 26 ktiVIKlGGsvl~~~~~~~~l~~dia~L~~~G~~vVlVhGg~~~i~~~l~~~~~~~---~-------------------- 82 (291)
T d2ap9a1 26 KVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEG---D-------------------- 82 (291)
T ss_dssp CEEEEEECTHHHHSHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCC---C--------------------
T ss_pred CEEEEEECcHHhcCHHHHHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHcCCCc---c--------------------
Confidence 67999999999999999999998887753 3454555443333444443321100 0
Q ss_pred HHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHH-hhchHHHHHHHHHHHHHcCCceEEeccceeEEEEec---
Q 008693 159 VDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLV-SFGECMSTRIFAAYLNKIGVKARQYDAFDIGFITTD--- 234 (557)
Q Consensus 159 ~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~-s~GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~--- 234 (557)
+.++. +..++...+.+. ..++..+. .+.+.+...|+.+..+.+.+.+++...
T Consensus 83 --------------------~~~~~---r~t~~~~~~~v~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~a~~~~ 138 (291)
T d2ap9a1 83 --------------------FKGGF---RVTTPEVLDVARMVLFGQVGR-ELVNLINAHGPYAVGITGEDAQLFTAVRRS 138 (291)
T ss_dssp --------------------CSSSS---CCBCHHHHHHHHHHHHHTHHH-HHHHHHTTSSSCEEEEETTGGGCEEEEECC
T ss_pred --------------------ccccc---ccCcHHHHHHHHHhhhhHHHH-HHHHHHHhcCCccccchhhhcccccccccc
Confidence 00111 122334444442 23334444 455678899999998877665554432
Q ss_pred --------CCCC-ceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEE
Q 008693 235 --------DFTN-ADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQV 305 (557)
Q Consensus 235 --------~~~~-a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i 305 (557)
+++. .++...+...+.. +++.+.|||++++ |.+ .+|+..+++ +|.+|+.+|.+|+|+++++
T Consensus 139 ~~~~~~~~~~~~~G~v~~v~~~~I~~-----ll~~g~ipvi~~~-~~~-~~g~~~n~d---~D~lAa~lA~~l~AdkLI~ 208 (291)
T d2ap9a1 139 VTVDGVATDIGLVGDVDQVNTAAMLD-----LVAAGRIPVVSTL-APD-ADGVVHNIN---ADTAAAAVAEALGAEKLLM 208 (291)
T ss_dssp BCSSSCCBCCBSEEEEEEECHHHHHH-----HHHTTCEEEEESE-EEC-TTCCEEEEC---HHHHHHHHHHHTTCSEEEE
T ss_pred cccccccccceeecccccchHHHHHH-----HHhcCCCcccCcc-ccC-Ccccccccc---HHHHHHHHHHhcCCcEEEE
Confidence 1211 2344455554433 4578899999994 666 479998887 9999999999999999999
Q ss_pred eeCCCccccCCCCCCCCCccccccCHHHHHHHHHcCCCcchHh--HHHHHHhCCCC-EEEecCCCC----------CCCC
Q 008693 306 WKDVDGVLTCDPNIHPHAKPVPYLTFDEAAELAYFGAQVLHPQ--SMRPAREGDIP-VRVKNSYNP----------NAPG 372 (557)
Q Consensus 306 ~TDVdGV~taDP~~v~~a~~i~~ls~~Ea~eLa~~Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p----------~~~G 372 (557)
+|||||||+.+|+. ...++.++..|+.++...+...|.|| ++..|.++|+| ++|.|...| ++.|
T Consensus 209 LTdv~Gv~~~~~~~---~~~~~~~~~~~~~~~~~~~~gGM~~Kl~aA~~a~~~Gv~rv~Ii~g~~~~~ll~eLft~~g~G 285 (291)
T d2ap9a1 209 LTDIDGLYTRWPDR---DSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTG 285 (291)
T ss_dssp EESSSSEETTTTCT---TCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCS
T ss_pred eeccCccccccccc---ccccccCCHHHHHHHHhhhhCchHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCc
Confidence 99999999998864 45778889999999988877888887 56677889998 999887655 3578
Q ss_pred eeEec
Q 008693 373 TLIRR 377 (557)
Q Consensus 373 T~I~~ 377 (557)
|+|.+
T Consensus 286 T~I~r 290 (291)
T d2ap9a1 286 TKVVR 290 (291)
T ss_dssp EEEEC
T ss_pred eEEec
Confidence 98865
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.66 E-value=1.1e-16 Score=125.47 Aligned_cols=66 Identities=39% Similarity=0.719 Sum_probs=63.4
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES 539 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~ 539 (557)
+++|+++|. |.+.||+++|+|++|+++||||.||+||+|+++|+|+|+++|.++|+++||++||++
T Consensus 1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~~Av~~Lh~~F~~e 67 (67)
T d2hmfa2 1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLLNCVRKLHEKFIEK 67 (67)
T ss_dssp EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHHHHHHHHHHHHTTC
T ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHHHHHHHHHHHHhcC
Confidence 589999997 889999999999999999999999999999999999999999999999999999964
|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.62 E-value=2.6e-16 Score=125.95 Aligned_cols=70 Identities=77% Similarity=1.074 Sum_probs=65.5
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccC-ccccc
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFES-DLANL 544 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~-~~~~~ 544 (557)
|+|++||+|.+.||+++|+|++|+++||||.||+||+|+++|+|+|+++|.++|+++||++||++ +.+++
T Consensus 2 a~IsvVG~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~~~Av~~Lh~~f~~~~~~~~v 72 (75)
T d2cdqa3 2 AIISLIGNVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEAEGCVQALHKSFFESGDLSEL 72 (75)
T ss_dssp EEEEEEECGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHHHHHHHHHHHHHHSSCCCCCC
T ss_pred cEEEEECCCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHHHHHHHHHHHHHhcCCCceeE
Confidence 79999999888999999999999999999999999999999999999999999999999999987 34443
|
| >d1e19a_ c.73.1.1 (A:) Carbamate kinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.57 E-value=2.7e-14 Score=144.45 Aligned_cols=114 Identities=14% Similarity=0.104 Sum_probs=84.9
Q ss_pred hcCCceEEEcCCCc-------ccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccC
Q 008693 258 ITDLAIPIVTGFLG-------KAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLT 330 (557)
Q Consensus 258 l~~~~vpVv~Gfig-------~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls 330 (557)
++.+.+|++.+... .+ .+|+..+.+ +|..|+.+|.+|+|+.++++|||||||+.+|+ ++++++++++
T Consensus 182 ~~~~~i~vl~~~~~~~v~~~~~~-~~G~~~nin---aD~lAa~vA~~l~Ad~LIlLTdv~Gv~~~~~~--~~~~~i~~l~ 255 (313)
T d1e19a_ 182 VERGVIVIASGGGGVPVILEDGE-IKGVEAVID---KDLAGEKLAEEVNADIFMILTDVNGAALYYGT--EKEQWLREVK 255 (313)
T ss_dssp HHTTCEEECSGGGCEEEEEETTE-EEECCCCCC---HHHHHHHHHHHTTCSEEEEEESSSSCEETTTS--TTCEECCEEE
T ss_pred cccchhhhhccCCCCCccccCCC-cCceEEecc---hhHHHHHHHHHHHHHHHHhccCCcceeccCCC--cccceeeeCC
Confidence 45777888765321 11 136666665 99999999999999999999999999998775 6889999999
Q ss_pred HHHHHHHHHcC---CCcchHh--HHHHHHhCCC-CEEEecCCCC-----CCCCeeEec
Q 008693 331 FDEAAELAYFG---AQVLHPQ--SMRPAREGDI-PVRVKNSYNP-----NAPGTLIRR 377 (557)
Q Consensus 331 ~~Ea~eLa~~G---a~vlhp~--a~~~a~~~~I-pv~I~n~~~p-----~~~GT~I~~ 377 (557)
.+|+.++...| ...|-|| +...|.++|+ +++|.+..+. .+.||+|.|
T Consensus 256 ~~e~~~li~~g~~~~GGM~~Kv~aA~~a~~~Gv~~v~I~~~~~i~~~l~g~~GT~i~P 313 (313)
T d1e19a_ 256 VEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHLEKAVEALEGKTGTQVLP 313 (313)
T ss_dssp HHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEGGGHHHHHTTSSSEEEEC
T ss_pred HHHHHHHhhCCCcccCChHHHHHHHHHHHHhCCCEEEECChHHHHHHHCCCCCCEEcC
Confidence 99999998754 3459997 5555566665 6888652221 125999865
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.53 E-value=8.3e-15 Score=123.81 Aligned_cols=77 Identities=27% Similarity=0.490 Sum_probs=71.2
Q ss_pred hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCcc
Q 008693 465 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDL 541 (557)
Q Consensus 465 ~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~~ 541 (557)
+..|++.+|+++|+++|. |...||+++|+|++|+++||||.||+|++|+++|+|+|+++|.++|+++||++|+....
T Consensus 6 vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~~a~~~L~~~f~~~~~ 83 (100)
T d2hmfa3 6 VKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVDKALKALKREFGDFGK 83 (100)
T ss_dssp CCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHHHHHHHHHHHHCCC--
T ss_pred eeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHHHHHHHHHHHHHhhcc
Confidence 456888899999999996 88999999999999999999999999999999999999999999999999999987643
|
| >d1gs5a_ c.73.1.2 (A:) N-acetyl-l-glutamate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: N-acetyl-l-glutamate kinase domain: N-acetyl-l-glutamate kinase species: Escherichia coli [TaxId: 562]
Probab=99.49 E-value=1.7e-13 Score=132.76 Aligned_cols=234 Identities=15% Similarity=0.185 Sum_probs=150.3
Q ss_pred cceEEEEecccccCCHHHHHHHHHHHHcCC--CCccEEEEcCCCcCcHHHHHhhHHhhhcCCCcchhhHHHHHHHHHHHH
Q 008693 80 QLTCVMKFGGSSLASAERMREVAELILSFP--NERPVIVLSAMGKTTNKLLLAGEKAVSCGVTNISCIDELSFVKDLHHR 157 (557)
Q Consensus 80 ~~~~V~KFGGsSv~~~~~~~~va~iI~~~~--~~~~vvVVSA~gg~Td~L~~~~~~a~~~~~~~~~~~~~l~~i~~~~~~ 157 (557)
|..+|.||||+++.|.+.++++++.|.... +.++|||||++|...+.+++...
T Consensus 2 m~~IVIKiGgs~lt~~~~~~~~~~~ia~l~~~g~~~vvvvhG~g~~~~~~~~~~g------------------------- 56 (258)
T d1gs5a_ 2 MNPLIIKLGGVLLDSEEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLN------------------------- 56 (258)
T ss_dssp CCCEEEEECGGGGGCHHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHT-------------------------
T ss_pred CCCEEEEECchhccCHHHHHHHHHHHHHHHHCCCceEEEECCCchhhhcchhhhc-------------------------
Confidence 556899999999999999999999987642 45778999988776666544211
Q ss_pred HHHHhCCCHHHHHHHHHHHHHHHHhhhhccCCCHHHHHHHHhh-chHHHHHHHHHHHHHcCCceEEeccceeEEEEecC-
Q 008693 158 TVDELGIDRSIIATHLEELEQLLKGIAMLKELTPRSRDYLVSF-GECMSTRIFAAYLNKIGVKARQYDAFDIGFITTDD- 235 (557)
Q Consensus 158 ~~~~l~~~~~~i~~~~~~l~~~l~~v~~~~~~~~~~~d~i~s~-GE~lsa~ll~~~L~~~Gi~a~~l~~~~~~iit~~~- 235 (557)
..+. ...+. +..+......+... ...++. .+...+...|.++......+........
T Consensus 57 ------~~~~-----------~~~~~---~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (258)
T d1gs5a_ 57 ------LPVK-----------KKNGL---RVTPADQIDIITGALAGTANK-TLLAWAKKHQIAAVGLFLGDGDSVKVTQL 115 (258)
T ss_dssp ------CCCC-----------EETTE---ECBCHHHHHHHHHHHHTHHHH-HHHHHHHHTTCCEEEECTTGGGCEEEEEC
T ss_pred ------cccc-----------ccccc---chhhHHHHHHHHHHHHHHHHH-HHHHHHhccCccccccccccccccccccc
Confidence 1000 00000 01112222222111 112233 3445688899998887765433332221
Q ss_pred ---CC-CceeeecchHHHHHHHhhchhcCCceEEEcCCCcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCc
Q 008693 236 ---FT-NADILEATYPAVAKRLHGDWITDLAIPIVTGFLGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDG 311 (557)
Q Consensus 236 ---~~-~a~i~~~~~~~v~~~l~~~ll~~~~vpVv~Gfig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdG 311 (557)
+. ...+.......+.. .+..+.+|++.++ +.+ .++...++. +|..|+.+|..++|+. .++||++|
T Consensus 116 ~~~~~~~~~~~~~~~~~i~~-----~~~~~~i~v~~~~-~~~-~~~~~~~~~---~~~~a~~~a~~l~a~~-~~~~~~~~ 184 (258)
T d1gs5a_ 116 DEELGHVGLAQPGSPKLINS-----LLENGYLPVVSSI-GVT-DEGQLMNVN---ADQAATALAATLGADL-ILLSDVSG 184 (258)
T ss_dssp CGGGBSBEEEEECCCHHHHH-----HHHTTCEEEECSE-EEC-TTSCEEECC---HHHHHHHHHHHHTCEE-EEEESSSS
T ss_pred cccccccccccccccchHHH-----HHhcccccccccc-ccc-cCCcEEEec---hhhhhhhHHHHHHhhh-hhhccccc
Confidence 11 13344444444433 2457889999985 445 367877776 9999999999999986 57899999
Q ss_pred cccCCCCCCCCCccccccCHHHHHHHHHc--CCCcchHh--HHHHHHhCCCC-EEEecCCCC---------CCCCeeEe
Q 008693 312 VLTCDPNIHPHAKPVPYLTFDEAAELAYF--GAQVLHPQ--SMRPAREGDIP-VRVKNSYNP---------NAPGTLIR 376 (557)
Q Consensus 312 V~taDP~~v~~a~~i~~ls~~Ea~eLa~~--Ga~vlhp~--a~~~a~~~~Ip-v~I~n~~~p---------~~~GT~I~ 376 (557)
++..++. ..+.+...|...+... +...|-|| ++..|.++|++ ++|.|...| +..||+|.
T Consensus 185 ~~~~~~~------~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aA~~a~~~Gv~~v~I~~g~~~~~L~~l~~g~~~GT~i~ 257 (258)
T d1gs5a_ 185 ILDGKGQ------RIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp CBCTTSC------BCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred ccccccc------cccccchHHHHHHHhCCcccchHHHHHHHHHHHHHcCCCEEEEEeCCCchHHHHHhcCCCCceEEe
Confidence 9987654 3556667776666554 44567776 67788899996 899987766 35699884
|
| >d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium [TaxId: 1352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Carbamate kinase-like superfamily: Carbamate kinase-like family: Carbamate kinase domain: Carbamate kinase species: Enterococcus faecium [TaxId: 1352]
Probab=99.48 E-value=1.2e-13 Score=138.96 Aligned_cols=100 Identities=16% Similarity=0.188 Sum_probs=79.1
Q ss_pred cCCceEEEcCC-----CcccCCCCceeecCCCcchhHHHHHHHHcCcCcEEEeeCCCccccCCCCCCCCCccccccCHHH
Q 008693 259 TDLAIPIVTGF-----LGKAWRTCAITTLGRGGSDLTATTIGKALGLQEIQVWKDVDGVLTCDPNIHPHAKPVPYLTFDE 333 (557)
Q Consensus 259 ~~~~vpVv~Gf-----ig~~~~~G~~ttlgRgGSD~tAa~lA~~L~A~~l~i~TDVdGV~taDP~~v~~a~~i~~ls~~E 333 (557)
..+.+|+..+- .+.+ .+|+..+.+ +|..|+.+|.+|+|+.++++|||||||+++|+ |+.+++++++.+|
T Consensus 179 ~~~~i~~~~~~~~~~~~~~~-~~g~~~nin---aD~lAa~iA~~l~Ad~Li~lTdv~Gv~~~~~~--~~~~~i~~l~~~e 252 (307)
T d1b7ba_ 179 KNDIITISCGGGGIPVVGQE-LKGVEAVID---KDFASEKLAELVDADALVILTGVDYVCINYGK--PDEKQLTNVTVAE 252 (307)
T ss_dssp HTTEEEECSGGGCEEEETTT-TEECSCCCC---HHHHHHHHHHHHTCSEEEEECSSSSCEETTTS--TTCEECSEEEHHH
T ss_pred hcCceeeccCCccccccccC-CCCcEEecc---hhHHHHHHHHHhhhhheeeccccCceeeCCCc--ccccccccCCHHH
Confidence 45666665321 1233 357777777 99999999999999999999999999999886 6788999999999
Q ss_pred HHHHHHcC---CCcchHh--HHHHHHhCCCC-EEEec
Q 008693 334 AAELAYFG---AQVLHPQ--SMRPAREGDIP-VRVKN 364 (557)
Q Consensus 334 a~eLa~~G---a~vlhp~--a~~~a~~~~Ip-v~I~n 364 (557)
+.+|...| ...|.|| +...|.++|++ ++|.+
T Consensus 253 ~~~l~~~g~~~~GGM~pKl~aA~~al~~Gv~~~~ii~ 289 (307)
T d1b7ba_ 253 LEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIIT 289 (307)
T ss_dssp HHHHHHTTCSCTTTHHHHHHHHHHHHTTSTTCEEEEE
T ss_pred HHHHHHCCCcccCChHHHHHHHHHHHHcCCCeEEEEC
Confidence 99998865 3569998 77788899985 45443
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.47 E-value=1.8e-14 Score=111.74 Aligned_cols=63 Identities=37% Similarity=0.634 Sum_probs=58.8
Q ss_pred eeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 474 RSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 474 ~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
+|+||++|. |...||+++|+|++|+ ++||.+|+|++|+++|||+|+++|.++|+++||++||+
T Consensus 1 la~IsvvG~gm~~~~gi~arif~~L~--~~nI~~i~~~~Se~~is~vV~~~d~~~Av~aLh~~Ffe 64 (64)
T d2j0wa3 1 LALVALIGNDLSKACGVGKEVFGVLE--PFNIRMICYGASSHNLCFLVPGEDAEQVVQKLHSNLFE 64 (64)
T ss_dssp EEEEEEEESSCTTSSSHHHHHHSSCT--TSCCCEEEESSCTTEEEEEEEGGGHHHHHHHHHHHHHC
T ss_pred CeEEEEECCCcccCccHHHHHHHHHh--hCCCeEEEEEcCccEEEEEEcHHHHHHHHHHHHHHhcC
Confidence 589999997 7889999999999997 56778899999999999999999999999999999985
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.40 E-value=2.4e-13 Score=112.68 Aligned_cols=89 Identities=83% Similarity=1.155 Sum_probs=72.3
Q ss_pred ceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhHHHHHHHHHHHHHHHh
Q 008693 384 AVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSRELIQQELDHVVEELE 463 (557)
Q Consensus 384 ~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~ 463 (557)
..+|+|++++|+++|++.|.+|.+.||+++++|+.|+++||||+||++|+.+|||++++++........+.+..+.++++
T Consensus 2 ~~v~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~Se~~is~~v~~~~~~~a~~~~~~~~~~~~el~ 81 (91)
T d2cdqa2 2 SILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELE 81 (91)
T ss_dssp CCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHHHHHHHT
T ss_pred CceEEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEecCCeEEEEEchhHHHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999998876543322233444444444
Q ss_pred hhheeecccceeEEEEEc
Q 008693 464 KIAIVNLLQHRSIISLIG 481 (557)
Q Consensus 464 ~~~~i~~~~~~aiIsIVG 481 (557)
+++.|++++
T Consensus 82 ---------~ia~VsVv~ 90 (91)
T d2cdqa2 82 ---------KIAVVNLLK 90 (91)
T ss_dssp ---------TTSEEEEEE
T ss_pred ---------CCceEEEee
Confidence 556666664
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=3e-12 Score=105.97 Aligned_cols=87 Identities=36% Similarity=0.506 Sum_probs=70.3
Q ss_pred cceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchhhhH-HHHHHHHHHHHHH
Q 008693 383 KAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKLWSR-ELIQQELDHVVEE 461 (557)
Q Consensus 383 ~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~~~~-~~~~~~l~~~~~~ 461 (557)
++++++|+.++|+++|++.|.+|.+.+|+++++|+.|+++||+|+|+++|+.+|||+++.++.... ..+ ..+.+.++
T Consensus 2 ~p~vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~Se~~is~~v~~~~~~~av~~L--~~~~~~~e 79 (91)
T d2j0wa2 2 PPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITTSEVSVALTLDTTGSTSTGDTL--LTQSLLME 79 (91)
T ss_dssp CCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEEETTEEEEEECCCCCSSTTCCS--SCHHHHHH
T ss_pred CCcceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEccCcEEEEEEchhHHHHHHHHH--HHHHHHHH
Confidence 357999999999999999999999999999999999999999999999999999999998764321 000 01234456
Q ss_pred Hhhhheeecc
Q 008693 462 LEKIAIVNLL 471 (557)
Q Consensus 462 l~~~~~i~~~ 471 (557)
|++++.+++.
T Consensus 80 L~~~~~V~ve 89 (91)
T d2j0wa2 80 LSALCRVEVE 89 (91)
T ss_dssp HHHHSCEEEE
T ss_pred HhccCcEEEe
Confidence 7777777654
|
| >d2hmfa3 d.58.18.10 (A:304-403) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=99.10 E-value=1.8e-10 Score=96.63 Aligned_cols=65 Identities=23% Similarity=0.445 Sum_probs=60.3
Q ss_pred CcceeeEEeeeccEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchhh
Q 008693 382 SKAVLTSIVLKRNVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (557)
Q Consensus 382 ~~~~Vt~Is~~~nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~~ 446 (557)
++..|++|++.+|+++|++.|.+|.+.||+++++|+.|+++||+|+||+ +|+.+|+|++++++..
T Consensus 2 ~~~~vk~I~~~~nva~IsivG~~m~~~~Gi~arif~~La~~~InV~mIsQ~~Se~~Isf~V~~~d~~ 68 (100)
T d2hmfa3 2 SDSIVKAISTIKNVALINIFGAGMVGVSGTAARIFKALGEEEVNVILISQGSSETNISLVVSEEDVD 68 (100)
T ss_dssp CSSSCCEEEEEEEEEEEEEEECSSSCHHHHHHHHHHHHHHTTCCEEEEEECCTTCCEEEEECSTTHH
T ss_pred CCCceeEEEecCCEEEEEEECCCCCCCcchHHHHHHHHHHcCCCHHHeeccCCcceEEEEEeHHHHH
Confidence 4457999999999999999999999999999999999999999999998 6789999999998754
|
| >d2j0wa2 d.58.18.10 (A:295-385) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=99.06 E-value=2.1e-12 Score=106.93 Aligned_cols=77 Identities=18% Similarity=0.322 Sum_probs=70.0
Q ss_pred hheeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhccCcccc
Q 008693 465 IAIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFESDLAN 543 (557)
Q Consensus 465 ~~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~~~~~~ 543 (557)
+..+...+++++|+++|. |...+|+++|+|++|+++||||.||+| |+.+||++|+.+|.++|+++||.+|+..++.+
T Consensus 5 vk~I~~~~~~~~i~v~g~~m~~~~G~~~~if~~L~~~~Inv~mis~--Se~~is~~v~~~~~~~av~~L~~~~~~~eL~~ 82 (91)
T d2j0wa2 5 FRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNISVDLITT--SEVSVALTLDTTGSTSTGDTLLTQSLLMELSA 82 (91)
T ss_dssp EEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCCCSEEEE--ETTEEEEEECCCCCSSTTCCSSCHHHHHHHHH
T ss_pred ceEEEEeCCEEEEEEEeCCCCCCcCHHHHHHHHHHHcCCcEEEEEc--cCcEEEEEEchhHHHHHHHHHHHHHHHHHHhc
Confidence 346788899999999997 888999999999999999999999998 89999999999999999999999988765544
|
| >d2cdqa2 d.58.18.10 (A:329-419) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.92 E-value=1.1e-10 Score=96.33 Aligned_cols=71 Identities=17% Similarity=0.242 Sum_probs=64.6
Q ss_pred heeecccceeEEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHhcc
Q 008693 466 AIVNLLQHRSIISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETFFE 538 (557)
Q Consensus 466 ~~i~~~~~~aiIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f~~ 538 (557)
..|...+|+++|+++|. |...||+++++|++|+++||||.||+| |+.+|||.|+++|..+|.+.+|+.+..
T Consensus 5 ~~I~~~~~ia~i~v~g~~m~~~~G~~a~if~~La~~~Inv~~Is~--Se~~is~~v~~~~~~~a~~~~~~~~~~ 76 (91)
T d2cdqa2 5 TSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFEELGISVDVVAT--SEVSISLTLDPSKLWSRELIQQELDHV 76 (91)
T ss_dssp EEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHHHTTCCEEEEEE--ETTEEEEEECCGGGSSSCCCHHHHHHH
T ss_pred EEEEEeCCEEEEEEEeCCCCCCccHHHHHHHHHHHcCCcEEEEEe--cCCeEEEEEchhHHHHHHHHHHHHHHH
Confidence 45777889999999996 889999999999999999999999998 899999999999999888888876654
|
| >d2hmfa2 d.58.18.10 (A:404-470) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Methanococcus jannaschii [TaxId: 2190]
Probab=98.57 E-value=5.4e-08 Score=75.15 Aligned_cols=52 Identities=29% Similarity=0.583 Sum_probs=48.5
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchhh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKLW 446 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~~ 446 (557)
+++|++.|.+|.+.||+++|+|+.|+++||||.||+ +|+.+|+|++++++..
T Consensus 1 Va~vsvvG~gm~~~~gi~arif~~L~~~~InV~mIsq~~Se~~Is~~V~~~d~~ 54 (67)
T d2hmfa2 1 VCVISVVGAGMRGAKGIAGKIFTAVSESGANIKMIAQGSSEVNISFVIDEKDLL 54 (67)
T ss_dssp EEEEEEECTTTTTCTTHHHHHHHHHHHTTCCCCEEEESSCSSEEEEEEEGGGHH
T ss_pred CEEEEEEeCCCCCCccHHHHHHHHHHHcCCChHHeeecCccceEEEEEeHHHHH
Confidence 578999999999999999999999999999999998 7899999999998753
|
| >d2cdqa3 d.58.18.10 (A:420-494) Aspartokinase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.19 E-value=8.5e-07 Score=69.78 Aligned_cols=49 Identities=14% Similarity=0.391 Sum_probs=45.3
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEE--ccCceeEEEeCCchh
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVA--TSEVSLSLTLDPSKL 445 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Is--tSe~sIS~~I~~~~~ 445 (557)
++|++.| +|.+.||+++|+|+.|++.||+|+||+ +|+.+|+|++++++.
T Consensus 2 a~IsvVG-~~~~~~Giaarif~aL~~~~InV~mIsqg~se~~Is~vV~~~d~ 52 (75)
T d2cdqa3 2 AIISLIG-NVQHSSLILERAFHVLYTKGVNVQMISQGASKVNISFIVNEAEA 52 (75)
T ss_dssp EEEEEEE-CGGGHHHHHHHHHHHHHHHTCCCSEEEECTTCSEEEEEEEHHHH
T ss_pred cEEEEEC-CCCCChhHHHHHHHHHHHcCCceEEEEcCccceEEEEEEeHHHH
Confidence 6799999 799999999999999999999999998 679999999998764
|
| >d2j0wa3 d.58.18.10 (A:386-449) Aspartokinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Aspartokinase allosteric domain-like domain: Aspartokinase species: Escherichia coli [TaxId: 562]
Probab=98.16 E-value=1.2e-06 Score=66.82 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=46.9
Q ss_pred EEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCchh
Q 008693 395 VTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSKL 445 (557)
Q Consensus 395 ialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~~ 445 (557)
+++|++.|.+|.+.||+.+|+|+.|++.+|++.+.++|+.+|||+|++++.
T Consensus 1 la~IsvvG~gm~~~~gi~arif~~L~~~nI~~i~~~~Se~~is~vV~~~d~ 51 (64)
T d2j0wa3 1 LALVALIGNDLSKACGVGKEVFGVLEPFNIRMICYGASSHNLCFLVPGEDA 51 (64)
T ss_dssp EEEEEEEESSCTTSSSHHHHHHSSCTTSCCCEEEESSCTTEEEEEEEGGGH
T ss_pred CeEEEEECCCcccCccHHHHHHHHHhhCCCeEEEEEcCccEEEEEEcHHHH
Confidence 578999999999999999999999999888887778999999999998874
|
| >d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Atu0741-like domain: Hypothetical protein Atu0741 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.75 E-value=0.013 Score=43.96 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=48.2
Q ss_pred EEEEEcc-ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHH
Q 008693 476 IISLIGN-VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHET 535 (557)
Q Consensus 476 iIsIVG~-~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~ 535 (557)
.+.+.|. -.+..|+++++.+.|+++||.+..+|+-.++. ++|++++.++|++.|.++
T Consensus 4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~~D~---ilVp~~~~~~A~~~L~~~ 61 (66)
T d1zhva2 4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDH---LLVRSNDLEKTADLLANA 61 (66)
T ss_dssp EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEE---EEEEGGGHHHHHHHHHHT
T ss_pred EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeeeccE---EEEEHHHHHHHHHHHHHc
Confidence 4566675 45778999999999999999999999855555 789999999999999764
|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=93.90 E-value=0.069 Score=40.26 Aligned_cols=54 Identities=17% Similarity=0.283 Sum_probs=41.1
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHHHHh
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALHETF 536 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH~~f 536 (557)
+.+.||-++++.+.|.++||||..+..-.+...=.+++.-+|.++|.+.|.++=
T Consensus 6 v~d~pG~L~~v~~~L~~~~InI~~~y~~~~~~~~~~vl~vdd~~~a~~~L~~~G 59 (71)
T d2f06a1 6 CPNVPGALAKVLGFLSAEGVFIEYMYSFANNNVANVVIRPSNMDKCIEVLKEKK 59 (71)
T ss_dssp EESSTTHHHHHHHHHHHTTCCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHTT
T ss_pred ecCCccHHHHHHHHHHHCCCCEEEEEEEcCCCcEEEEEEECCHHHHHHHHHHCC
Confidence 678899999999999999999975333222233346666679999999998763
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=93.75 E-value=0.064 Score=40.44 Aligned_cols=54 Identities=17% Similarity=0.290 Sum_probs=41.8
Q ss_pred ccccchHHHHHHHHHHhCCCcEEEEEecCC-ceEEEEEEecccHHHHHHHHHHHhc
Q 008693 483 VQRSSLILEKAFRVLRRSGVNVQMISQGAS-KVNISLIVNDDEAEQCVRALHETFF 537 (557)
Q Consensus 483 ~~~~~~v~~rif~~L~~~gInI~~IsqgsS-e~sIs~vV~~~d~~kAv~~LH~~f~ 537 (557)
+.+.||.++++...|++.||||..++.+.+ +..++-++ -++.++|.+.|++.=|
T Consensus 10 ~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Rii-v~~~e~a~~~L~~~g~ 64 (70)
T d2f06a2 10 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGI-VSDPDKAYKALKDNHF 64 (70)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEE-ESCHHHHHHHHHHTTC
T ss_pred EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEE-ECChHHHHHHHHHCCC
Confidence 357899999999999999999998776654 44444433 4578999999987644
|
| >d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: VC0802-like domain: Hypothetical protein VC0802 species: Vibrio cholerae [TaxId: 666]
Probab=93.07 E-value=0.15 Score=37.58 Aligned_cols=46 Identities=17% Similarity=0.229 Sum_probs=40.8
Q ss_pred ccchHHHHHHHHHHhCCCcEEEEEecCCceEEEEEEecccHHHHHHHHH
Q 008693 485 RSSLILEKAFRVLRRSGVNVQMISQGASKVNISLIVNDDEAEQCVRALH 533 (557)
Q Consensus 485 ~~~~v~~rif~~L~~~gInI~~IsqgsSe~sIs~vV~~~d~~kAv~~LH 533 (557)
+..|+++.+.+.|+++||.+..|+.--.++ ++|++++.++|++.|.
T Consensus 15 e~VGl~A~is~~La~~~Is~nvis~~~hDh---ifVp~~~~~~Al~~L~ 60 (64)
T d1zvpa2 15 EAVGLTAAFATKLAEHGISANVIAGYYHDH---IFVQKEKAQQALQALG 60 (64)
T ss_dssp CCSCHHHHHHHHHHHTTCCCEEEECSSCEE---EEEEGGGHHHHHHHHT
T ss_pred HHHhHHHHHHHHHHHCCCCeEEEEeeccce---EEEchhhHHHHHHHHH
Confidence 467899999999999999999999755555 7999999999999885
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Probab=89.45 E-value=0.15 Score=39.09 Aligned_cols=52 Identities=15% Similarity=0.374 Sum_probs=39.0
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
.+.||+++|+...|.+.|+||+.++.++ ..+++++..++ +.++++.+.|+++
T Consensus 10 eN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~--------~~i~qi~kQL~Kl 67 (77)
T d2pc6a2 10 ENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPD--------EIVEQITKQLNKL 67 (77)
T ss_dssp ECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECH--------HHHHHHHHHHHHS
T ss_pred ECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCH--------HHHHHHHHHHhCC
Confidence 3689999999999999999999987432 34677776554 2456666777764
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Probab=89.32 E-value=0.2 Score=38.15 Aligned_cols=52 Identities=15% Similarity=0.369 Sum_probs=38.8
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
.+.||+++|+...|++.|+||+.++.++ ..+++++..++ +.++++.+.|+++
T Consensus 9 ~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~--------~~i~qi~kQL~Kl 66 (76)
T d2f1fa1 9 ENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDE--------KVLEQIEKQLHKL 66 (76)
T ss_dssp ECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCH--------HHHHHHHHHHHHS
T ss_pred ECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCH--------HHHHHHHHHHhCC
Confidence 3689999999999999999999987432 34677776654 2456666777764
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Probab=89.23 E-value=0.27 Score=37.63 Aligned_cols=52 Identities=15% Similarity=0.341 Sum_probs=38.4
Q ss_pred cchhhHHHHHHHHHHhCCceEEEEEccC------ceeEEEeCCchhhhHHHHHHHHHHHHHHHhhh
Q 008693 406 LGQYGFLAKVFSTFEDLGISVDVVATSE------VSLSLTLDPSKLWSRELIQQELDHVVEELEKI 465 (557)
Q Consensus 406 ~~~~g~la~If~~L~~~gI~Vd~IstSe------~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~~~ 465 (557)
.+.||+++|+...|.+.|+|++.++.++ ..++++++.++ +.++++.+.|+++
T Consensus 11 ~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~--------~~i~qi~kQl~Kl 68 (78)
T d2fgca2 11 HNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDD--------KTIEQIEKQAYKL 68 (78)
T ss_dssp ECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECT--------THHHHHHHHHTTS
T ss_pred eCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCH--------HHHHHHHHHHhCC
Confidence 3689999999999999999999986331 34677776554 1355666677764
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=88.66 E-value=0.64 Score=35.37 Aligned_cols=37 Identities=27% Similarity=0.366 Sum_probs=31.5
Q ss_pred eEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecCCc
Q 008693 475 SIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGASK 513 (557)
Q Consensus 475 aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~IsqgsSe 513 (557)
++|+++| .+.||+.+++.+.|++.|+||.-++|...+
T Consensus 3 ~vitv~g--~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~ 39 (83)
T d1zpva1 3 AIITVVG--KDKSGIVAGVSGKIAELGLNIDDISQTVLD 39 (83)
T ss_dssp EEEEEEE--SCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred EEEEEEc--CCCCCHHHHHHHHHHHCCCeEEEEEeEEeC
Confidence 5788888 578999999999999999999988886433
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=88.49 E-value=0.59 Score=35.95 Aligned_cols=48 Identities=13% Similarity=0.306 Sum_probs=36.6
Q ss_pred eeEEEEEccccccchHHHHHHHHHHhCCCcEEEEEecC--CceEEEEEEecc
Q 008693 474 RSIISLIGNVQRSSLILEKAFRVLRRSGVNVQMISQGA--SKVNISLIVNDD 523 (557)
Q Consensus 474 ~aiIsIVG~~~~~~~v~~rif~~L~~~gInI~~Isqgs--Se~sIs~vV~~~ 523 (557)
..+|+++| .+.||+.+++...|++.|+||.-+.|.. ....+.+.|..+
T Consensus 5 ~~vitv~G--~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~ 54 (86)
T d1u8sa1 5 HLVITAVG--TDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGS 54 (86)
T ss_dssp EEEEEEEE--ECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEe--CCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcC
Confidence 45788888 4679999999999999999998776544 444455566544
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=87.54 E-value=1.1 Score=33.88 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=28.4
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist 431 (557)
++|++.+ .++||.++++.+.|+++|+||.-+.+
T Consensus 3 ~vitv~g---~DrpGiVa~vt~~l~~~g~NI~d~~q 35 (83)
T d1zpva1 3 AIITVVG---KDKSGIVAGVSGKIAELGLNIDDISQ 35 (83)
T ss_dssp EEEEEEE---SCCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEc---CCCCCHHHHHHHHHHHCCCeEEEEEe
Confidence 4678886 46999999999999999999988764
|
| >d1zhva2 d.58.18.8 (A:62-127) Hypothetical protein Atu0741 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Atu0741-like domain: Hypothetical protein Atu0741 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=84.60 E-value=1.3 Score=32.41 Aligned_cols=47 Identities=19% Similarity=0.244 Sum_probs=37.8
Q ss_pred EEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCch
Q 008693 397 MLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (557)
Q Consensus 397 lItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~ 444 (557)
.+++.+..-++..|+++++.+.|+++||++..+++.....-| |+.++
T Consensus 4 ~l~v~g~l~l~~vGi~a~i~~~La~a~Is~~~vSty~~D~il-Vp~~~ 50 (66)
T d1zhva2 4 CFKFQGPFAFDETGIVLSVISPLSTNGIGIFVVSTFDGDHLL-VRSND 50 (66)
T ss_dssp EEEECSCCCCSSCCHHHHHHHHHHTTTCCCEEEECSSCEEEE-EEGGG
T ss_pred EEEEccCCCchhHhHHHHHHHHHHHCCCCeEEEEeeeccEEE-EEHHH
Confidence 466766555678999999999999999999999988777654 55554
|
| >d1zvpa2 d.58.18.9 (A:68-131) Hypothetical protein VC0802 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: VC0802-like domain: Hypothetical protein VC0802 species: Vibrio cholerae [TaxId: 666]
Probab=83.39 E-value=2 Score=31.28 Aligned_cols=48 Identities=19% Similarity=0.286 Sum_probs=35.2
Q ss_pred EEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEccCceeEEEeCCch
Q 008693 396 TMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATSEVSLSLTLDPSK 444 (557)
Q Consensus 396 alItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstSe~sIS~~I~~~~ 444 (557)
.+|++.-..-+...|+++.+-+.|+++||++..+++....--| ++.++
T Consensus 4 r~ItL~vhssLe~VGl~A~is~~La~~~Is~nvis~~~hDhif-Vp~~~ 51 (64)
T d1zvpa2 4 SLITLTVHSSLEAVGLTAAFATKLAEHGISANVIAGYYHDHIF-VQKEK 51 (64)
T ss_dssp EEEEEECCC--CCSCHHHHHHHHHHHTTCCCEEEECSSCEEEE-EEGGG
T ss_pred EEEEEecCCchHHHhHHHHHHHHHHHCCCCeEEEEeeccceEE-Echhh
Confidence 3566655455678999999999999999999999987666544 44443
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=83.20 E-value=2.3 Score=31.42 Aligned_cols=38 Identities=11% Similarity=0.198 Sum_probs=29.2
Q ss_pred ccchhhHHHHHHHHHHhCCceEEEEE---ccCceeE-EEeCC
Q 008693 405 MLGQYGFLAKVFSTFEDLGISVDVVA---TSEVSLS-LTLDP 442 (557)
Q Consensus 405 m~~~~g~la~If~~L~~~gI~Vd~Is---tSe~sIS-~~I~~ 442 (557)
+.++||.++++...|+++||||..++ +.+..+. +.++.
T Consensus 10 ~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~~~~i~Riiv~~ 51 (70)
T d2f06a2 10 LENKSGRLTEVTEVLAKENINLSALCIAENADFGILRGIVSD 51 (70)
T ss_dssp ECSSSSHHHHHHHHHHHTTCCEEEEEEEECSSCEEEEEEESC
T ss_pred EeCCCcHHHHHHHHHHHCCCCEEEEEEeecCCCCEEEEEECC
Confidence 45799999999999999999999986 3444543 44543
|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=82.08 E-value=2.7 Score=32.40 Aligned_cols=62 Identities=18% Similarity=0.274 Sum_probs=40.8
Q ss_pred EEEEecCccchhhHHHHHHHHHHhCCceEEEEEcc--------------CceeEEEeCCchhhhHHHHHHHHHHHHHHHh
Q 008693 398 LDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVATS--------------EVSLSLTLDPSKLWSRELIQQELDHVVEELE 463 (557)
Q Consensus 398 ItI~~~~m~~~~g~la~If~~L~~~gI~Vd~IstS--------------e~sIS~~I~~~~~~~~~~~~~~l~~~~~~l~ 463 (557)
|+|.+ .++||+++++-..|+++|+||.-+.+. ...+.+.++.+. ....++++|..+..+|.
T Consensus 9 v~v~g---~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~--~~~~l~~~l~~l~~~l~ 83 (93)
T d1u8sa2 9 VYVES---DDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGC--NLMQLQEEFDALCTALD 83 (93)
T ss_dssp EEEEE---SCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTS--CHHHHHHHHHHHHHHHT
T ss_pred EEEEE---CCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccc--cHHHHHHHHHHHHHHce
Confidence 45555 468999999999999999999876431 123455555431 23345566766666665
Q ss_pred h
Q 008693 464 K 464 (557)
Q Consensus 464 ~ 464 (557)
-
T Consensus 84 v 84 (93)
T d1u8sa2 84 V 84 (93)
T ss_dssp C
T ss_pred e
Confidence 3
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=81.84 E-value=3.5 Score=31.23 Aligned_cols=35 Identities=14% Similarity=0.146 Sum_probs=29.0
Q ss_pred cEEEEEEEecCccchhhHHHHHHHHHHhCCceEEEEEc
Q 008693 394 NVTMLDIVSTRMLGQYGFLAKVFSTFEDLGISVDVVAT 431 (557)
Q Consensus 394 nialItI~~~~m~~~~g~la~If~~L~~~gI~Vd~Ist 431 (557)
...+|++.|. ++||+++++...|+++|+||.-+.+
T Consensus 4 ~~~vitv~G~---DrpGiva~vt~~l~~~g~NI~d~~~ 38 (86)
T d1u8sa1 4 QHLVITAVGT---DRPGICNEVVRLVTQAGCNIIDSRI 38 (86)
T ss_dssp EEEEEEEEEE---CCTTHHHHHHHHHHHTTCEEEEEEE
T ss_pred cEEEEEEEeC---CCChHHHHHHHHHHHCCCeEEEeEe
Confidence 3456788874 6899999999999999999987753
|