Citrus Sinensis ID: 008702

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGEAAASAMGGRGRGRGRGMRRR
ccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEcccHHHHHHHcccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccEEEccccccccccEEEEEEEccccccccccccccccccccEEEEcccccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccEEEEcccHHcHHHHHHHHccEEcccccccccccccccccEEEEEEccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccc
ccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccccEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHccEEEEEccccccccEEEEEEEEEEEEEcccccccccEEEEEEEEEEcccEcccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccEcHHHHHHHHHcccEEEccccHHHHHHHHHHHccccEcccccccccccEEEEEEEEEEEccEEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccEEEEEEEccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccc
MAAMMQPQIILLkegtdtsqgKAQLVSNINACTAVADVVrstlgprgmdklihddkgtvtisnDGATIMKLLDIVHPAAKILVDIAksqdsevgdgTTTVVLLAAEFLREakpfiedgvhpqnliRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVgaigdgdrlnmigikkvpggtmrdsfLVNGVAFkktfsyagfeqqpkkflnpkILLLNIELELksekenaeirlsdpsqyqsiVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAtggtvqtsVNNVVDEVLGtcehfeerqvgnerfnifsgcpsgrtATIVLRGGADQFIEEAERSLHDAIMIVRRATknstvvagggaiDMEISKYLRQESRAIAGKSQFFINSYAKALEVIprqlcdnagfdATDVLNKLRqkhalptgegapygvdintggiadsfanfvwEPAVVKINAINAATEAACLILSvdetvknpksesaqGEAAASAmggrgrgrgrgmrrr
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTlgprgmdklihddkgtvTISNDGATIMKLLDIVHPAAKILVDIAksqdsevgdGTTTVVLLAAEFLREAkpfiedgvhpqNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTlsskliggekEFFASMVVDAVgaigdgdrlnMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAgfeqqpkkflnpKILLLNIELELKSEKEnaeirlsdpsqyqSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAatggtvqtsvnnVVDEVLGTCEHFEERQVGnerfnifsgcpsgRTATIVLRGGADQFIEEAERSLHDAIMIVrratknstvvagggaiDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETvknpksesaqgeaaasamggrgrgrgrgmrrr
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFlnpkilllnielelksekenAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKsesaqgeaaasamggrgrgrgrgmrrr
**********************AQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKEL**************LLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELEL***************QYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVD**********************************
******P********************NINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDE*********************************
MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETV*******************************
*****QPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNP****************************
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MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFxxxxxxxxxxxxxxxxxxxxxSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGEAAASAMGGRGRGRGRGMRRR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q5ZJK8553 T-complex protein 1 subun yes no 0.942 0.949 0.683 0.0
P80313544 T-complex protein 1 subun yes no 0.973 0.996 0.663 0.0
Q2NKZ1543 T-complex protein 1 subun yes no 0.942 0.966 0.676 0.0
Q99832543 T-complex protein 1 subun yes no 0.942 0.966 0.676 0.0
Q5R5C8543 T-complex protein 1 subun yes no 0.942 0.966 0.674 0.0
Q54ER7555 T-complex protein 1 subun yes no 0.985 0.989 0.614 0.0
P87153558 Probable T-complex protei yes no 0.980 0.978 0.622 0.0
P54409558 T-complex protein 1 subun N/A no 0.976 0.974 0.619 0.0
P42943550 T-complex protein 1 subun yes no 0.969 0.981 0.586 0.0
O77323539 T-complex protein 1 subun yes no 0.949 0.981 0.591 0.0
>sp|Q5ZJK8|TCPH_CHICK T-complex protein 1 subunit eta OS=Gallus gallus GN=CCT7 PE=1 SV=1 Back     alignment and function desciption
 Score =  756 bits (1951), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 361/528 (68%), Positives = 435/528 (82%), Gaps = 3/528 (0%)

Query: 4   MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISN 63
           MM   +ILLKEGTDTSQG  QLVSNINAC  +A+ VR+TLGPRGMDKLI DD+G  TISN
Sbjct: 1   MMPTPVILLKEGTDTSQGIPQLVSNINACQVIAEAVRTTLGPRGMDKLIVDDRGKATISN 60

Query: 64  DGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQN 123
           DGATI+KLLD+VHPAAK LVDIAKSQD+EVGDGTT+V LLAAEFL++ KP++E+G+HPQ 
Sbjct: 61  DGATILKLLDVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQI 120

Query: 124 LIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVV 183
           +IR+FR A+  A+ K+K++A S++ +  +E++ LL KCAAT LSSKLI   KEFF+ MVV
Sbjct: 121 IIRAFRTATQLAVNKIKDIAVSVKKEDKDEQRSLLEKCAATALSSKLISQSKEFFSKMVV 180

Query: 184 DAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL 243
           DAV  + D  +L MIGIKKV GG + DS LV GVAFKKTFSYAGFE QPKK+ +PKI LL
Sbjct: 181 DAVMMLDDLLQLKMIGIKKVQGGALEDSQLVAGVAFKKTFSYAGFEMQPKKYQSPKIALL 240

Query: 244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLAT 303
           N+ELELK+EK+NAE+R++    YQ+IVDAEWNI+YDKLDK  +SGAKVVLS+L IGD+AT
Sbjct: 241 NVELELKAEKDNAEVRVNTVEDYQAIVDAEWNILYDKLDKIHKSGAKVVLSKLPIGDVAT 300

Query: 304 QYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNI 363
           QYFADRD+FCAGRV EEDL R   A GG++QTSVN + D+VLG CE FEE Q+G +R+N 
Sbjct: 301 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSDDVLGRCELFEEIQIGGDRYNF 360

Query: 364 FSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYL 423
           F+GCP  +T TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYL
Sbjct: 361 FTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYL 420

Query: 424 RQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV 483
           R  SR I GK Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR KHA     G  YGV
Sbjct: 421 RDYSRTIPGKQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRAKHA---QGGMWYGV 477

Query: 484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKS 531
           D+N   IAD+F   VWEPA+V+INA+ AA+EAACLI+SVDET+KNP+S
Sbjct: 478 DVNNEDIADNFEACVWEPAIVRINALTAASEAACLIVSVDETIKNPRS 525
Molecular chaperone; assists the folding of proteins upon ATP hydrolysis. Known to play a role, in vitro, in the folding of actin and tubulin.
Gallus gallus (taxid: 9031)
>sp|P80313|TCPH_MOUSE T-complex protein 1 subunit eta OS=Mus musculus GN=Cct7 PE=1 SV=1 Back     alignment and function description
>sp|Q2NKZ1|TCPH_BOVIN T-complex protein 1 subunit eta OS=Bos taurus GN=CCT7 PE=1 SV=1 Back     alignment and function description
>sp|Q99832|TCPH_HUMAN T-complex protein 1 subunit eta OS=Homo sapiens GN=CCT7 PE=1 SV=2 Back     alignment and function description
>sp|Q5R5C8|TCPH_PONAB T-complex protein 1 subunit eta OS=Pongo abelii GN=CCT7 PE=2 SV=1 Back     alignment and function description
>sp|Q54ER7|TCPH_DICDI T-complex protein 1 subunit eta OS=Dictyostelium discoideum GN=cct7 PE=3 SV=1 Back     alignment and function description
>sp|P87153|TCPH_SCHPO Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cct7 PE=1 SV=1 Back     alignment and function description
>sp|P54409|TCPH_TETPY T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1 Back     alignment and function description
>sp|P42943|TCPH_YEAST T-complex protein 1 subunit eta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CCT7 PE=1 SV=1 Back     alignment and function description
>sp|O77323|TCPH_PLAF7 T-complex protein 1 subunit eta OS=Plasmodium falciparum (isolate 3D7) GN=MAL3P3.6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
357493557561 T-complex protein 1 subunit eta [Medicag 0.973 0.966 0.926 0.0
224132234561 predicted protein [Populus trichocarpa] 0.964 0.957 0.925 0.0
356554348560 PREDICTED: T-complex protein 1 subunit e 0.973 0.967 0.920 0.0
356501324560 PREDICTED: T-complex protein 1 subunit e 0.974 0.969 0.917 0.0
449452668562 PREDICTED: T-complex protein 1 subunit e 0.985 0.976 0.928 0.0
359497202562 PREDICTED: T-complex protein 1 subunit e 0.971 0.962 0.922 0.0
224102919561 predicted protein [Populus trichocarpa] 0.964 0.957 0.925 0.0
302399091558 TCP domain class transcription factor [M 0.971 0.969 0.926 0.0
147784036567 hypothetical protein VITISV_002043 [Viti 0.971 0.954 0.913 0.0
15229866557 TCP-1/cpn60 chaperonin family protein [A 0.964 0.964 0.923 0.0
>gi|357493557|ref|XP_003617067.1| T-complex protein 1 subunit eta [Medicago truncatula] gi|355518402|gb|AET00026.1| T-complex protein 1 subunit eta [Medicago truncatula] Back     alignment and taxonomy information
 Score = 1030 bits (2664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 502/542 (92%), Positives = 522/542 (96%)

Query: 1   MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVT 60
           M++M+QPQIILLKEGTDTSQGK QLVSNINACTAVADVVR+TLGPRGMDKLIHDDKG+VT
Sbjct: 1   MSSMLQPQIILLKEGTDTSQGKPQLVSNINACTAVADVVRTTLGPRGMDKLIHDDKGSVT 60

Query: 61  ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120
           ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH
Sbjct: 61  ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120

Query: 121 PQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFAS 180
            QNLIRS+R A   AI+KVKELA SIEG+SLEEKK LL KCAATTLSSKLIGGEKEFFAS
Sbjct: 121 SQNLIRSYRTAGSLAIEKVKELAVSIEGKSLEEKKSLLGKCAATTLSSKLIGGEKEFFAS 180

Query: 181 MVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKI 240
           MVVDAV AIG  DRLNMIGIKKVPGG MRDSFLVNGVAFKKTFSYAGFEQQPKKFL+PKI
Sbjct: 181 MVVDAVIAIGTDDRLNMIGIKKVPGGNMRDSFLVNGVAFKKTFSYAGFEQQPKKFLDPKI 240

Query: 241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD 300
           LLLN+ELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD
Sbjct: 241 LLLNVELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD 300

Query: 301 LATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNER 360
           LATQYFADRDIFCAGRVAEEDL RVAAATGGTVQTSVNN++DEVLGTCE FEE+QVGNER
Sbjct: 301 LATQYFADRDIFCAGRVAEEDLKRVAAATGGTVQTSVNNIIDEVLGTCEIFEEKQVGNER 360

Query: 361 FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEIS 420
           FNIF+GCPSG+TATIVLRGGADQFIEEAERSLHDAIMIVRRA KNSTVVAGGGAIDMEIS
Sbjct: 361 FNIFNGCPSGQTATIVLRGGADQFIEEAERSLHDAIMIVRRAMKNSTVVAGGGAIDMEIS 420

Query: 421 KYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP 480
           +YLRQ +R IAGKSQ FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALP+GEGAP
Sbjct: 421 RYLRQHARTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPSGEGAP 480

Query: 481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGEAAA 540
           +GVDI TGGIADSFANFVWEPAVVKINAINAATEAACL+LSVDETVKNPKSESAQGEAAA
Sbjct: 481 FGVDIATGGIADSFANFVWEPAVVKINAINAATEAACLVLSVDETVKNPKSESAQGEAAA 540

Query: 541 SA 542
           SA
Sbjct: 541 SA 542

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224132234|ref|XP_002328218.1| predicted protein [Populus trichocarpa] gi|222837733|gb|EEE76098.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356554348|ref|XP_003545509.1| PREDICTED: T-complex protein 1 subunit eta-like [Glycine max] Back     alignment and taxonomy information
>gi|356501324|ref|XP_003519475.1| PREDICTED: T-complex protein 1 subunit eta-like [Glycine max] Back     alignment and taxonomy information
>gi|449452668|ref|XP_004144081.1| PREDICTED: T-complex protein 1 subunit eta-like [Cucumis sativus] gi|449493528|ref|XP_004159333.1| PREDICTED: T-complex protein 1 subunit eta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359497202|ref|XP_002266000.2| PREDICTED: T-complex protein 1 subunit eta-like [Vitis vinifera] gi|296088202|emb|CBI35717.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224102919|ref|XP_002312854.1| predicted protein [Populus trichocarpa] gi|222849262|gb|EEE86809.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|302399091|gb|ADL36840.1| TCP domain class transcription factor [Malus x domestica] Back     alignment and taxonomy information
>gi|147784036|emb|CAN70107.1| hypothetical protein VITISV_002043 [Vitis vinifera] Back     alignment and taxonomy information
>gi|15229866|ref|NP_187789.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] gi|6671939|gb|AAF23199.1|AC016795_12 putative T-complex protein 1, ETA subunit [Arabidopsis thaliana] gi|17979243|gb|AAL49938.1| AT3g11830/F26K24_12 [Arabidopsis thaliana] gi|20857172|gb|AAM26704.1| AT3g11830/F26K24_12 [Arabidopsis thaliana] gi|332641584|gb|AEE75105.1| TCP-1/cpn60 chaperonin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2081491557 AT3G11830 [Arabidopsis thalian 0.951 0.951 0.886 3e-243
UNIPROTKB|Q5ZJK8553 CCT7 "T-complex protein 1 subu 0.940 0.947 0.658 9.7e-183
UNIPROTKB|Q2NKZ1543 CCT7 "T-complex protein 1 subu 0.940 0.965 0.650 1.1e-179
MGI|MGI:107184544 Cct7 "chaperonin containing Tc 0.940 0.963 0.648 1.1e-179
RGD|1306422544 Cct7 "chaperonin containing Tc 0.940 0.963 0.647 1.5e-179
UNIPROTKB|F1SLF6543 CCT7 "Uncharacterized protein" 0.938 0.963 0.648 3.9e-179
UNIPROTKB|B6V9S8543 B6V9S8 "Chaperonin-containing 0.940 0.965 0.647 5e-179
UNIPROTKB|F1MWR8541 CCT7 "T-complex protein 1 subu 0.931 0.959 0.653 6.3e-179
ZFIN|ZDB-GENE-020419-7547 cct7 "chaperonin containing TC 0.940 0.957 0.639 8.1e-179
UNIPROTKB|Q99832543 CCT7 "T-complex protein 1 subu 0.940 0.965 0.648 1e-178
TAIR|locus:2081491 AT3G11830 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2344 (830.2 bits), Expect = 3.0e-243, P = 3.0e-243
 Identities = 470/530 (88%), Positives = 488/530 (92%)

Query:     1 MAAMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVT 60
             MA+MMQPQIILLKEGTDTSQGKAQLVSNINACTAV DVVR+TLGPRGMDKLIHDDKG+VT
Sbjct:     1 MASMMQPQIILLKEGTDTSQGKAQLVSNINACTAVGDVVRTTLGPRGMDKLIHDDKGSVT 60

Query:    61 ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVH 120
             ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFL+EAKPFIEDGVH
Sbjct:    61 ISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLKEAKPFIEDGVH 120

Query:   121 PQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFAS 180
              QNLIRS+R AS  AI KVKELA SIEG+S+EEKK LL+KCAATTLSSKLIGGEKEFFA+
Sbjct:   121 AQNLIRSYRTASTLAIAKVKELAVSIEGKSVEEKKGLLAKCAATTLSSKLIGGEKEFFAT 180

Query:   181 MVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXX 240
             MVVDAV AIG+ DRLN+IGIKKVPGG MRDSFLV+GVAFKKTFSYAGFEQQPKKF     
Sbjct:   181 MVVDAVMAIGNDDRLNLIGIKKVPGGNMRDSFLVDGVAFKKTFSYAGFEQQPKKFLNPKI 240

Query:   241 XXXXXXXXXXXXXXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGD 300
                            AEIRLSDPSQYQSIVDAEWNIIYDKLDKCV+SGAKVVLSRLAIGD
Sbjct:   241 LLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVESGAKVVLSRLAIGD 300

Query:   301 LATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNER 360
             LATQYFADRDIFCAGRVAEEDL RVAAA GGTVQTSVNN++DEVLGTCE FEE+QVG ER
Sbjct:   301 LATQYFADRDIFCAGRVAEEDLNRVAAAAGGTVQTSVNNIIDEVLGTCEIFEEKQVGGER 360

Query:   361 FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEIS 420
             FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA KNSTVV GGGAIDMEIS
Sbjct:   361 FNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEIS 420

Query:   421 KYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAP 480
             KYLRQ SR IAGKSQ FINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHA+ +GEGA 
Sbjct:   421 KYLRQHSRTIAGKSQLFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHAMQSGEGAS 480

Query:   481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530
             YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK
Sbjct:   481 YGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530
GO:0005524 "ATP binding" evidence=IEA
GO:0006457 "protein folding" evidence=IEA
GO:0044267 "cellular protein metabolic process" evidence=IEA
GO:0051082 "unfolded protein binding" evidence=IEA
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0009664 "plant-type cell wall organization" evidence=RCA
GO:0042545 "cell wall modification" evidence=RCA
UNIPROTKB|Q5ZJK8 CCT7 "T-complex protein 1 subunit eta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q2NKZ1 CCT7 "T-complex protein 1 subunit eta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:107184 Cct7 "chaperonin containing Tcp1, subunit 7 (eta)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1306422 Cct7 "chaperonin containing Tcp1, subunit 7 (eta)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|F1SLF6 CCT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B6V9S8 B6V9S8 "Chaperonin-containing T-complex polypeptide eta subunit" [Oryctolagus cuniculus (taxid:9986)] Back     alignment and assigned GO terms
UNIPROTKB|F1MWR8 CCT7 "T-complex protein 1 subunit eta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-020419-7 cct7 "chaperonin containing TCP1, subunit 7 (eta)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q99832 CCT7 "T-complex protein 1 subunit eta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9V2T8THSB_SULSONo assigned EC number0.37400.91380.9187yesno
O28045THSA_ARCFUNo assigned EC number0.37890.92450.9449yesno
Q5ZJK8TCPH_CHICKNo assigned EC number0.68370.94250.9493yesno
Q9V2T4THSB_SULACNo assigned EC number0.37970.91380.9204yesno
P42943TCPH_YEASTNo assigned EC number0.58650.96940.9818yesno
O26320THSA_METTHNo assigned EC number0.38600.91380.9391yesno
Q8SR53TCPH_ENCCUNo assigned EC number0.43840.89220.9726yesno
Q52500THSB_PYRKONo assigned EC number0.36430.93710.9560yesno
Q5R5C8TCPH_PONABNo assigned EC number0.67420.94250.9668yesno
P48424THSA_THEACNo assigned EC number0.37820.91920.9394yesno
Q2NKZ1TCPH_BOVINNo assigned EC number0.67610.94250.9668yesno
O24735THSB_SULTONo assigned EC number0.38540.91380.9221yesno
Q9V2Q7THS_PYRABNo assigned EC number0.36650.92630.9381yesno
P54409TCPH_TETPYNo assigned EC number0.61910.97660.9749N/Ano
P80313TCPH_MOUSENo assigned EC number0.66300.97300.9963yesno
Q99832TCPH_HUMANNo assigned EC number0.67610.94250.9668yesno
O57762THS_PYRHONo assigned EC number0.37400.92630.9398yesno
Q54ER7TCPH_DICDINo assigned EC number0.61440.98560.9891yesno
O30561THS1_HALVDNo assigned EC number0.36900.91560.9107yesno
O77323TCPH_PLAF7No assigned EC number0.59130.94970.9814yesno
Q9YA66THSB_AERPENo assigned EC number0.37470.92810.9434yesno
P50016THS_METKANo assigned EC number0.36950.91380.9339yesno
P87153TCPH_SCHPONo assigned EC number0.62290.98020.9784yesno
Q58405THS_METJANo assigned EC number0.36790.92100.9464yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
cd03340522 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type I 0.0
TIGR02345523 TIGR02345, chap_CCT_eta, T-complex protein 1, eta 0.0
cd00309464 cd00309, chaperonin_type_I_II, chaperonin families 0.0
pfam00118481 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin fami 1e-171
COG0459524 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Po 1e-156
cd03343517 cd03343, cpn60, cpn60 chaperonin family 1e-154
TIGR02339519 TIGR02339, thermosome_arch, thermosome, various su 1e-148
cd03335527 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type 1e-139
TIGR02340536 TIGR02340, chap_CCT_alpha, T-complex protein 1, al 1e-135
PTZ00212533 PTZ00212, PTZ00212, T-complex protein 1 subunit be 1e-124
cd03336517 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type 1e-121
cd03338515 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type 1e-116
cd03337480 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type 1e-114
TIGR02344525 TIGR02344, chap_CCT_gamma, T-complex protein 1, ga 1e-109
TIGR02342517 TIGR02342, chap_CCT_delta, T-complex protein 1, de 1e-108
TIGR02341518 TIGR02341, chap_CCT_beta, T-complex protein 1, bet 1e-103
cd03339526 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic ty 1e-102
TIGR02343532 TIGR02343, chap_CCT_epsi, T-complex protein 1, eps 3e-98
cd03341472 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type 8e-92
TIGR02346531 TIGR02346, chap_CCT_theta, T-complex protein 1, th 4e-83
cd03342484 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type 8e-73
TIGR02347531 TIGR02347, chap_CCT_zeta, T-complex protein 1, zet 4e-71
cd03333209 cd03333, chaperonin_like, chaperonin_like superfam 1e-67
cd03334261 cd03334, Fab1_TCP, TCP-1 like domain of the eukary 3e-22
PTZ00114555 PTZ00114, PTZ00114, Heat shock protein 60; Provisi 1e-20
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 3e-14
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 1e-12
PLN03167600 PLN03167, PLN03167, Chaperonin-60 beta subunit; Pr 2e-12
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 4e-11
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 4e-11
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 8e-11
PRK14104546 PRK14104, PRK14104, chaperonin GroEL; Provisional 8e-11
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 1e-10
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 7e-09
PRK12850544 PRK12850, groEL, chaperonin GroEL; Reviewed 2e-08
CHL00093529 CHL00093, groEL, chaperonin GroEL 3e-08
PRK12852545 PRK12852, groEL, chaperonin GroEL; Reviewed 2e-07
PRK12849542 PRK12849, groEL, chaperonin GroEL; Reviewed 2e-06
PRK12851541 PRK12851, groEL, chaperonin GroEL; Reviewed 6e-06
PRK00013542 PRK00013, groEL, chaperonin GroEL; Reviewed 2e-05
cd03344520 cd03344, GroEL, GroEL_like type I chaperonin 8e-04
TIGR02348524 TIGR02348, GroEL, chaperonin GroL 0.001
>gnl|CDD|239456 cd03340, TCP1_eta, TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information 
 Score = 1020 bits (2639), Expect = 0.0
 Identities = 398/524 (75%), Positives = 456/524 (87%), Gaps = 2/524 (0%)

Query: 8   QIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGAT 67
            IILLKEGTDTSQGK QL+SNINAC A+AD VR+TLGPRGMDKLI D +G VTISNDGAT
Sbjct: 1   PIILLKEGTDTSQGKGQLISNINACQAIADAVRTTLGPRGMDKLIVDGRGKVTISNDGAT 60

Query: 68  IMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRS 127
           I+KLLDIVHPAAK LVDIAKSQD+EVGDGTT+VV+LA EFL+EAKPFIEDGVHPQ +IR 
Sbjct: 61  ILKLLDIVHPAAKTLVDIAKSQDAEVGDGTTSVVVLAGEFLKEAKPFIEDGVHPQIIIRG 120

Query: 128 FRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVG 187
           +R A   AI+K+KE+A +I+ +  EE++ LL KCAAT L+SKLI  EKEFFA MVVDAV 
Sbjct: 121 YRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLIASEKEFFAKMVVDAVL 180

Query: 188 AIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIEL 247
           ++ D   L+MIGIKKVPGG++ DS LVNGVAFKKTFSYAGFEQQPKKF NPKILLLN+EL
Sbjct: 181 SLDDDLDLDMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVEL 240

Query: 248 ELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFA 307
           ELK+EK+NAE+R+ DP +YQ+IVDAEW IIYDKL+K V+SGA VVLS+L IGDLATQYFA
Sbjct: 241 ELKAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFA 300

Query: 308 DRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGC 367
           DRDIFCAGRV EEDL RVA ATGG++QT+V+N+ D+VLGTC  FEERQVG ER+NIF+GC
Sbjct: 301 DRDIFCAGRVPEEDLKRVAQATGGSIQTTVSNITDDVLGTCGLFEERQVGGERYNIFTGC 360

Query: 368 PSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQES 427
           P  +T TI+LRGGA+QFIEEAERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR  S
Sbjct: 361 PKAKTCTIILRGGAEQFIEEAERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYS 420

Query: 428 RAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINT 487
           R IAGK Q  IN++AKALE+IPRQLCDNAGFDATD+LNKLRQKHA   G G  YGVDIN 
Sbjct: 421 RTIAGKQQLVINAFAKALEIIPRQLCDNAGFDATDILNKLRQKHA--QGGGKWYGVDINN 478

Query: 488 GGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKS 531
            GIAD+F  FVWEP++VKINA+ AATEAACLILSVDET+KNPKS
Sbjct: 479 EGIADNFEAFVWEPSLVKINALTAATEAACLILSVDETIKNPKS 522

Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin. Length = 522
>gnl|CDD|200176 TIGR02345, chap_CCT_eta, T-complex protein 1, eta subunit Back     alignment and domain information
>gnl|CDD|238189 cd00309, chaperonin_type_I_II, chaperonin families, type I and type II Back     alignment and domain information
>gnl|CDD|215730 pfam00118, Cpn60_TCP1, TCP-1/cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|223535 COG0459, GroL, Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>gnl|CDD|239459 cd03343, cpn60, cpn60 chaperonin family Back     alignment and domain information
>gnl|CDD|233823 TIGR02339, thermosome_arch, thermosome, various subunits, archaeal Back     alignment and domain information
>gnl|CDD|239451 cd03335, TCP1_alpha, TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>gnl|CDD|131393 TIGR02340, chap_CCT_alpha, T-complex protein 1, alpha subunit Back     alignment and domain information
>gnl|CDD|185514 PTZ00212, PTZ00212, T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|239452 cd03336, TCP1_beta, TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>gnl|CDD|239454 cd03338, TCP1_delta, TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>gnl|CDD|239453 cd03337, TCP1_gamma, TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>gnl|CDD|233825 TIGR02344, chap_CCT_gamma, T-complex protein 1, gamma subunit Back     alignment and domain information
>gnl|CDD|233824 TIGR02342, chap_CCT_delta, T-complex protein 1, delta subunit Back     alignment and domain information
>gnl|CDD|211733 TIGR02341, chap_CCT_beta, T-complex protein 1, beta subunit Back     alignment and domain information
>gnl|CDD|239455 cd03339, TCP1_epsilon, TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>gnl|CDD|131396 TIGR02343, chap_CCT_epsi, T-complex protein 1, epsilon subunit Back     alignment and domain information
>gnl|CDD|239457 cd03341, TCP1_theta, TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>gnl|CDD|233826 TIGR02346, chap_CCT_theta, T-complex protein 1, theta subunit Back     alignment and domain information
>gnl|CDD|239458 cd03342, TCP1_zeta, TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>gnl|CDD|233827 TIGR02347, chap_CCT_zeta, T-complex protein 1, zeta subunit Back     alignment and domain information
>gnl|CDD|239449 cd03333, chaperonin_like, chaperonin_like superfamily Back     alignment and domain information
>gnl|CDD|239450 cd03334, Fab1_TCP, TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>gnl|CDD|185455 PTZ00114, PTZ00114, Heat shock protein 60; Provisional Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|215611 PLN03167, PLN03167, Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|172594 PRK14104, PRK14104, chaperonin GroEL; Provisional Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237231 PRK12850, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|177025 CHL00093, groEL, chaperonin GroEL Back     alignment and domain information
>gnl|CDD|237232 PRK12852, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|237230 PRK12849, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|234573 PRK00013, groEL, chaperonin GroEL; Reviewed Back     alignment and domain information
>gnl|CDD|239460 cd03344, GroEL, GroEL_like type I chaperonin Back     alignment and domain information
>gnl|CDD|233828 TIGR02348, GroEL, chaperonin GroL Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
KOG0361543 consensus Chaperonin complex component, TCP-1 eta 100.0
cd03340522 TCP1_eta TCP-1 (CTT or eukaryotic type II) chapero 100.0
TIGR02345522 chap_CCT_eta T-complex protein 1, eta subunit. Mem 100.0
TIGR02347531 chap_CCT_zeta T-complex protein 1, zeta subunit. M 100.0
PTZ00212533 T-complex protein 1 subunit beta; Provisional 100.0
TIGR02339519 thermosome_arch thermosome, various subunits, arch 100.0
cd03336517 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaper 100.0
TIGR02344525 chap_CCT_gamma T-complex protein 1, gamma subunit. 100.0
cd03343517 cpn60 cpn60 chaperonin family. Chaperonins are inv 100.0
cd03335527 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chape 100.0
cd03339526 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) cha 100.0
TIGR02343532 chap_CCT_epsi T-complex protein 1, epsilon subunit 100.0
TIGR02341519 chap_CCT_beta T-complex protein 1, beta subunit. M 100.0
TIGR02342517 chap_CCT_delta T-complex protein 1, delta subunit. 100.0
cd03338515 TCP1_delta TCP-1 (CTT or eukaryotic type II) chape 100.0
TIGR02340536 chap_CCT_alpha T-complex protein 1, alpha subunit. 100.0
TIGR02346531 chap_CCT_theta T-complex protein 1, theta subunit. 100.0
cd03342484 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaper 100.0
KOG0363527 consensus Chaperonin complex component, TCP-1 beta 100.0
KOG0358534 consensus Chaperonin complex component, TCP-1 delt 100.0
cd03337480 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chape 100.0
COG0459524 GroL Chaperonin GroEL (HSP60 family) [Posttranslat 100.0
cd00309464 chaperonin_type_I_II chaperonin families, type I a 100.0
cd03341472 TCP1_theta TCP-1 (CTT or eukaryotic type II) chape 100.0
PRK00013542 groEL chaperonin GroEL; Reviewed 100.0
PRK12849542 groEL chaperonin GroEL; Reviewed 100.0
PF00118485 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperon 100.0
PRK12850544 groEL chaperonin GroEL; Reviewed 100.0
PRK12851541 groEL chaperonin GroEL; Reviewed 100.0
PTZ00114555 Heat shock protein 60; Provisional 100.0
PRK12852545 groEL chaperonin GroEL; Reviewed 100.0
cd03344520 GroEL GroEL_like type I chaperonin. Chaperonins ar 100.0
TIGR02348524 GroEL chaperonin GroL. This family consists of Gro 100.0
CHL00093529 groEL chaperonin GroEL 100.0
PRK14104546 chaperonin GroEL; Provisional 100.0
KOG0364527 consensus Chaperonin complex component, TCP-1 gamm 100.0
PLN03167600 Chaperonin-60 beta subunit; Provisional 100.0
KOG0360545 consensus Chaperonin complex component, TCP-1 alph 100.0
KOG0362537 consensus Chaperonin complex component, TCP-1 thet 100.0
KOG0359520 consensus Chaperonin complex component, TCP-1 zeta 100.0
KOG0357400 consensus Chaperonin complex component, TCP-1 epsi 100.0
KOG0356550 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [ 100.0
cd03334261 Fab1_TCP TCP-1 like domain of the eukaryotic phosp 100.0
cd03333209 chaperonin_like chaperonin_like superfamily. Chape 100.0
KOG0230 1598 consensus Phosphatidylinositol-4-phosphate 5-kinas 99.88
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-114  Score=837.30  Aligned_cols=531  Identities=76%  Similarity=1.144  Sum_probs=517.0

Q ss_pred             ccchhHhhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHH
Q 008702            4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV   83 (557)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~   83 (557)
                      ||+||..+|++|++.++|.-.+.+|+.||..+++.++|||||+|++|+|++..|+++|||||+||||-|++-||+++.|+
T Consensus         1 ~m~~~ii~lkegtd~sqGk~QlvSNInaC~~v~e~~rtTLGP~GmDkLivd~~g~~tIsNDGATIlKlldivhPaaktlV   80 (543)
T KOG0361|consen    1 MMQPPIILLKEGTDPSQGKGQLVSNINACTAVAEALRTTLGPRGMDKLIVDSKGKTTISNDGATILKLLDIVHPAAKTLV   80 (543)
T ss_pred             CCCCCEEEeecccCcccCchhhhhchHHHHHHHHHHHhccCccccceeeecCCCcEEEecCcHHHHHHHhhcChhHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 008702           84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA  163 (557)
Q Consensus        84 ~~a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~  163 (557)
                      +.+++||.++||||||+|+|++++|+++-.+++.|+||..|+++|++|...|++.++++++.++..+...-++.|++.|.
T Consensus        81 dia~sQDaEVGDGTTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~  160 (543)
T KOG0361|consen   81 DIARSQDAEVGDGTTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAA  160 (543)
T ss_pred             HHHhhccccccCCceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999887766667899999999


Q ss_pred             HhhccCccCchhHHHHHHHHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEe
Q 008702          164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL  243 (557)
Q Consensus       164 tsl~sk~~~~~~~~ls~lv~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~  243 (557)
                      |+++||++.+..++|+++++||+..+....+.+.|.|++++||+++||.+++|+-|.+.|.+.+|+.+|+++.||||+++
T Consensus       161 T~lsSKlI~~ek~fF~~MvVDAV~~ld~~l~~~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~L  240 (543)
T KOG0361|consen  161 TALSSKLIRQEKEFFAKMVVDAVLTLDNDLDLNMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLL  240 (543)
T ss_pred             HHhhhhhhhhhHHHHHHHHHHHHHhhccccchhhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEE
Confidence            99999999999999999999999998743378999999999999999999999999999999999999999999999999


Q ss_pred             eccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHH
Q 008702          244 NIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLL  323 (557)
Q Consensus       244 ~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le  323 (557)
                      |-.||.+.++.++++.+.++++++.+++.||+.+.++++++...|++||++.-.|+|.+.+||++++|+|-++++.+||.
T Consensus       241 nvELElKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~  320 (543)
T KOG0361|consen  241 NVELELKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLN  320 (543)
T ss_pred             eeeeeecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHh
Q 008702          324 RVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRAT  403 (557)
Q Consensus       324 ~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~  403 (557)
                      |+..++|++|.++..++.+..||+|..|++.++|.+||-+|+||+..+.||++|||+.++.++|.+|++|||++++|.++
T Consensus       321 Rv~~acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~eRyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDAImIVrral  400 (543)
T KOG0361|consen  321 RVMQACGGSIQTTVSDIKEEVLGTCALFEERQVGGERYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDAIMIVRRAL  400 (543)
T ss_pred             HHHHhcCcchhhhhhhcchhhcchhhhHHHHhhcchhhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEE
Q 008702          404 KNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGV  483 (557)
Q Consensus       404 ~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gi  483 (557)
                      ++..||+|||++||++++.|++|+.++.+++|+.+.+|++|||.|||+||+|+|+|..+++.+||..|++  |. .|+|+
T Consensus       401 kn~~vVaGGGaiEMElSk~lRd~S~ti~gK~q~~i~A~akalEvIPrqLc~NaGfDa~~ilnkLR~rHA~--G~-~w~Gv  477 (543)
T KOG0361|consen  401 KNDSVVAGGGAIEMELSKYLRDYSRTIAGKQQLFINAYAKALEVIPRQLCDNAGFDATNILNKLRQRHAQ--GE-KWYGV  477 (543)
T ss_pred             ccCcEeeCCceeeehHHHHHHHhhcccCcHHHHHHHHHHHHHHHhHHHHhhhcCCcHHHHHHHHHHHhhc--CC-ceeee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999998  88 99999


Q ss_pred             ecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCccccc
Q 008702          484 DINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGE  537 (557)
Q Consensus       484 d~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~~~~~  537 (557)
                      |.++..+.|+++.+||||..||.+++..|+|+|++||.+|+.|+..++..+.|+
T Consensus       478 di~~e~i~dn~~~~VwEP~~VK~Nai~aateAa~lIlsvDeTikn~~S~~~~p~  531 (543)
T KOG0361|consen  478 DINTEGIADNFEKFVWEPSIVKINAITAATEAACLILSVDETIKNPKSQSAPPS  531 (543)
T ss_pred             eecccchhhHHHhhccChHHHHHHHHHHHHHhhhheEehhhhhcCCcccCCCCC
Confidence            999999999999999999999999999999999999999999999887766343

>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit Back     alignment and domain information
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit Back     alignment and domain information
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit Back     alignment and domain information
>PTZ00212 T-complex protein 1 subunit beta; Provisional Back     alignment and domain information
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal Back     alignment and domain information
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit Back     alignment and domain information
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit Back     alignment and domain information
>cd03343 cpn60 cpn60 chaperonin family Back     alignment and domain information
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit Back     alignment and domain information
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit Back     alignment and domain information
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit Back     alignment and domain information
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit Back     alignment and domain information
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit Back     alignment and domain information
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit Back     alignment and domain information
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit Back     alignment and domain information
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit Back     alignment and domain information
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit Back     alignment and domain information
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit Back     alignment and domain information
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II Back     alignment and domain information
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit Back     alignment and domain information
>PRK00013 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12849 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism Back     alignment and domain information
>PRK12850 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PRK12851 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>PTZ00114 Heat shock protein 60; Provisional Back     alignment and domain information
>PRK12852 groEL chaperonin GroEL; Reviewed Back     alignment and domain information
>cd03344 GroEL GroEL_like type I chaperonin Back     alignment and domain information
>TIGR02348 GroEL chaperonin GroL Back     alignment and domain information
>CHL00093 groEL chaperonin GroEL Back     alignment and domain information
>PRK14104 chaperonin GroEL; Provisional Back     alignment and domain information
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PLN03167 Chaperonin-60 beta subunit; Provisional Back     alignment and domain information
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1 Back     alignment and domain information
>cd03333 chaperonin_like chaperonin_like superfamily Back     alignment and domain information
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3iyg_H515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 0.0
3p9d_G550 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-172
3ko1_A553 Cystal Structure Of Thermosome From Acidianus Tengc 1e-101
1a6d_A545 Thermosome From T. Acidophilum Length = 545 4e-92
3los_A543 Atomic Model Of Mm-Cpn In The Closed State Length = 5e-86
3izh_A513 Mm-Cpn D386a With Atp Length = 513 1e-85
1q3r_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-85
3rus_A543 Crystal Structure Of Cpn-Rls In Complex With Adp Fr 6e-85
1q3s_A548 Crystal Structure Of The Chaperonin From Thermococc 7e-85
3izi_A513 Mm-Cpn Rls With Atp Length = 513 1e-84
1q2v_A548 Crystal Structure Of The Chaperonin From Thermococc 3e-84
3iyg_A529 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-83
1a6d_B543 Thermosome From T. Acidophilum Length = 543 5e-83
3p9d_A559 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-80
3iyf_A521 Atomic Model Of The Lidless Mm-Cpn In The Open Stat 6e-79
3izn_A491 Mm-Cpn Deltalid With Atp Length = 491 2e-78
3j02_A491 Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Boun 2e-77
3izk_A491 Mm-Cpn Rls Deltalid With Atp Length = 491 3e-77
3iyg_D518 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-76
3p9d_B527 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-74
3aq1_B500 Open State Monomer Of A Group Ii Chaperonin From Me 3e-72
3iyg_B513 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-69
3iyg_G515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 4e-67
3p9d_E562 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-66
3p9d_D528 The Crystal Structure Of Yeast Cct Reveals Intrinsi 3e-65
3iyg_E515 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-60
3p9d_C590 The Crystal Structure Of Yeast Cct Reveals Intrinsi 7e-49
3iyg_Z517 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 2e-47
3p9d_F546 The Crystal Structure Of Yeast Cct Reveals Intrinsi 1e-45
3iyg_Q512 Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGST 3e-42
3p9d_H568 The Crystal Structure Of Yeast Cct Reveals Intrinsi 5e-42
1ass_A159 Apical Domain Of The Chaperonin From Thermoplasma A 8e-17
3rtk_A546 Crystal Structure Of Cpn60.2 From Mycobacterium Tub 2e-12
1e0r_B159 Beta-Apical Domain Of Thermosome Length = 159 2e-12
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 5e-12
1we3_A543 Crystal Structure Of The Chaperonin Complex Cpn60CP 5e-04
1iok_A545 Crystal Structure Of Chaperonin-60 From Paracoccus 2e-10
1aon_A547 Crystal Structure Of The Asymmetric Chaperonin Comp 7e-09
4aaq_A548 Atp-Triggered Molecular Mechanics Of The Chaperonin 8e-09
1j4z_A547 Structural And Mechanistic Basis For Allostery In T 8e-09
1pcq_A524 Crystal Structure Of Groel-Groes Length = 524 8e-09
3c9v_A526 C7 Symmetrized Structure Of Unliganded Groel At 4.7 8e-09
2yey_A524 Crystal Structure Of The Allosteric-Defective Chape 8e-09
2eu1_A548 Crystal Structure Of The Chaperonin Groel-E461k Len 8e-09
1sx3_A525 Groel14-(Atpgammas)14 Length = 525 1e-08
3cau_A526 D7 Symmetrized Structure Of Unliganded Groel At 4.2 1e-08
1ss8_A524 Groel Length = 524 1e-08
1oel_A547 Conformational Variability In The Refined Structure 1e-08
1grl_A548 The Crystal Structure Of The Bacterial Chaperonin G 1e-08
1kp8_A547 Structural Basis For Groel-Assisted Protein Folding 1e-08
1gr5_A547 Solution Structure Of Apo Groel By Cryo-Electron Mi 1e-08
1sjp_A504 Mycobacterium Tuberculosis Chaperonin60.2 Length = 3e-07
1gml_A178 Crystal Structure Of The Mouse Cct Gamma Apical Dom 3e-06
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure 
Iteration: 1

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 337/518 (65%), Positives = 407/518 (78%), Gaps = 3/518 (0%)
Query: 13  KEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLL 72
           KEGTD+SQG  QLVSNI+AC  +A+ VR+TLGPRGMDKLI D +G  TISNDGATI+KLL
Sbjct: 1   KEGTDSSQGIPQLVSNISACQVIAEAVRTTLGPRGMDKLIVDGRGKATISNDGATILKLL 60
Query: 73  DIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNAS 132
           D+VHPAAK LVDIAKSQD+EVGDGTT+V LLAAEFL++ KP++E+G+HPQ +IR+FR A+
Sbjct: 61  DVVHPAAKTLVDIAKSQDAEVGDGTTSVTLLAAEFLKQVKPYVEEGLHPQIIIRAFRTAT 120
Query: 133 YKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASMVVDAVGAIGDG 192
             A+ K+KE+A +++ +   E+++LL KCA T LSSKLI  +K FFA MVVDAV  + D 
Sbjct: 121 QLAVNKIKEIAVTVKKEDKVEQRKLLEKCAMTALSSKLISQQKAFFAKMVVDAVMMLDDL 180
Query: 193 DRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFXXXXXXXXXXXXXXXXX 252
            +L MIGIKKV GG + +S LV GVAFKKTFSYAGFE QPKK+                 
Sbjct: 181 LQLKMIGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAE 240
Query: 253 XXXAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIF 312
              AEIR+     YQ+IVDAEWNI+YDKL+K   SGAKVVLS+L IGD+ATQYFADRD+F
Sbjct: 241 KDNAEIRVHTVEDYQAIVDAEWNILYDKLEKIHHSGAKVVLSKLPIGDVATQYFADRDMF 300
Query: 313 CAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRT 372
           CAGRV EEDL R   A GG++QTSVN +  +VLG C+ FEE Q+G ER+N F+GCP  +T
Sbjct: 301 CAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGERYNFFTGCPKAKT 360
Query: 373 ATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISKYLRQESRAIAG 432
            TI+LRGGA+QF+EE ERSLHDAIMIVRRA KN +VVAGGGAI+ME+SKYLR  SR I G
Sbjct: 361 CTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVAGGGAIEMELSKYLRDYSRTIPG 420
Query: 433 KSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIAD 492
           K Q  I +YAKALE+IPRQLCDNAGFDAT++LNKLR +HA     G  YGVDINT  IAD
Sbjct: 421 KQQLLIGAYAKALEIIPRQLCDNAGFDATNILNKLRARHA---QGGMWYGVDINTEDIAD 477
Query: 493 SFANFVWEPAVVKINAINAATEAACLILSVDETVKNPK 530
           +F  FVWEPA+V+INA+ AA+EAACLI+SVDET+KNP+
Sbjct: 478 NFEAFVWEPAMVRINALTAASEAACLIVSVDETIKNPR 515
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 550 Back     alignment and structure
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus Tengchongensis Strain S5 Length = 553 Back     alignment and structure
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum Length = 545 Back     alignment and structure
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State Length = 543 Back     alignment and structure
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp Length = 513 Back     alignment and structure
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form Of Single Mutant) Length = 548 Back     alignment and structure
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From Methanococcus Maripaludis Length = 543 Back     alignment and structure
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Formiii Crystal Complexed With Adp) Length = 548 Back     alignment and structure
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp Length = 513 Back     alignment and structure
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus Strain Ks-1 (Nucleotide-Free Form) Length = 548 Back     alignment and structure
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 529 Back     alignment and structure
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum Length = 543 Back     alignment and structure
>pdb|3P9D|A Chain A, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 559 Back     alignment and structure
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State Length = 521 Back     alignment and structure
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State Length = 491 Back     alignment and structure
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp Length = 491 Back     alignment and structure
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 518 Back     alignment and structure
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 527 Back     alignment and structure
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From Methanococcoides Burtonii Length = 500 Back     alignment and structure
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 513 Back     alignment and structure
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 562 Back     alignment and structure
>pdb|3P9D|D Chain D, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 528 Back     alignment and structure
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 515 Back     alignment and structure
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 590 Back     alignment and structure
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 517 Back     alignment and structure
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 546 Back     alignment and structure
>pdb|3IYG|Q Chain Q, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM Cryo-Em Map Length = 512 Back     alignment and structure
>pdb|3P9D|H Chain H, The Crystal Structure Of Yeast Cct Reveals Intrinsic Asymmetry Of Eukaryotic Cytosolic Chaperonins Length = 568 Back     alignment and structure
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma Acidophilum Length = 159 Back     alignment and structure
>pdb|3RTK|A Chain A, Crystal Structure Of Cpn60.2 From Mycobacterium Tuberculosis At 2.8a Length = 546 Back     alignment and structure
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome Length = 159 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1WE3|A Chain A, Crystal Structure Of The Chaperonin Complex Cpn60CPN10(ADP)7 FROM THERMUS THERMOPHILUS Length = 543 Back     alignment and structure
>pdb|1IOK|A Chain A, Crystal Structure Of Chaperonin-60 From Paracoccus Denitrificans Length = 545 Back     alignment and structure
>pdb|1AON|A Chain A, Crystal Structure Of The Asymmetric Chaperonin Complex GroelGROES(ADP)7 Length = 547 Back     alignment and structure
>pdb|4AAQ|A Chain A, Atp-Triggered Molecular Mechanics Of The Chaperonin Groel Length = 548 Back     alignment and structure
>pdb|1J4Z|A Chain A, Structural And Mechanistic Basis For Allostery In The Bacterial Chaperonin Groel; See Remark 400 Length = 547 Back     alignment and structure
>pdb|1PCQ|A Chain A, Crystal Structure Of Groel-Groes Length = 524 Back     alignment and structure
>pdb|3C9V|A Chain A, C7 Symmetrized Structure Of Unliganded Groel At 4.7 Angstrom Resolution From Cryoem Length = 526 Back     alignment and structure
>pdb|2YEY|A Chain A, Crystal Structure Of The Allosteric-Defective Chaperonin Groel E434k Mutant Length = 524 Back     alignment and structure
>pdb|2EU1|A Chain A, Crystal Structure Of The Chaperonin Groel-E461k Length = 548 Back     alignment and structure
>pdb|1SX3|A Chain A, Groel14-(Atpgammas)14 Length = 525 Back     alignment and structure
>pdb|3CAU|A Chain A, D7 Symmetrized Structure Of Unliganded Groel At 4.2 Angstrom Resolution By Cryoem Length = 526 Back     alignment and structure
>pdb|1SS8|A Chain A, Groel Length = 524 Back     alignment and structure
>pdb|1OEL|A Chain A, Conformational Variability In The Refined Structure Of The Chaperonin Groel At 2.8 Angstrom Resolution Length = 547 Back     alignment and structure
>pdb|1GRL|A Chain A, The Crystal Structure Of The Bacterial Chaperonin Groel At 2.8 Angstroms Length = 548 Back     alignment and structure
>pdb|1KP8|A Chain A, Structural Basis For Groel-Assisted Protein Folding From The Crystal Structure Of (Groel-Kmgatp)14 At 2.0 A Resolution Length = 547 Back     alignment and structure
>pdb|1GR5|A Chain A, Solution Structure Of Apo Groel By Cryo-Electron Microscopy Length = 547 Back     alignment and structure
>pdb|1SJP|A Chain A, Mycobacterium Tuberculosis Chaperonin60.2 Length = 504 Back     alignment and structure
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain (Triclinic) Length = 178 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 0.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 0.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 0.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 0.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 0.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 0.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 0.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 0.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 0.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 0.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 0.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 0.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 0.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 0.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 0.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 0.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 0.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 0.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 0.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 0.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 0.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 0.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 2e-73
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 4e-62
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 5e-10
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 4e-05
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 6e-10
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 3e-05
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 1e-09
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 7e-06
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 1e-09
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 2e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* Length = 550 Back     alignment and structure
 Score =  776 bits (2006), Expect = 0.0
 Identities = 316/552 (57%), Positives = 406/552 (73%), Gaps = 6/552 (1%)

Query: 1   MA-AMMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTV 59
           M      P I++LKEGTD SQGK Q++SNINAC AV + ++ TLGP G D LI       
Sbjct: 1   MNFGSQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKT 60

Query: 60  TISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGV 119
           TISNDGATI+KLLD+VHPAAK LVDI+++QD+EVGDGTT+V +LA E ++EAKPF+E+G+
Sbjct: 61  TISNDGATILKLLDVVHPAAKTLVDISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGI 120

Query: 120 HPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFA 179
               +++ +R A   A++K+ ELA  I  +    ++ L  +CA T +SSKLI    +FF 
Sbjct: 121 SSHLIMKGYRKAVSLAVEKINELAVDITSEKSSGRELLE-RCARTAMSSKLIHNNADFFV 179

Query: 180 SMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNP 238
            M VDAV ++   D    +IGIKK+PGG M +S  +NGVAFKKTFSYAGFEQQPKKF NP
Sbjct: 180 KMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNP 239

Query: 239 KILLLNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAI 298
           KIL LN+ELELK+EK+NAE+R+     YQ+IVDAEW +I++KL +  ++GA +VLS+L I
Sbjct: 240 KILSLNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPI 299

Query: 299 GDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGN 358
           GDLATQ+FADR+IFCAGRV+ +D+ RV  A GG++Q++ +++  E LGTC  FEE Q+G+
Sbjct: 300 GDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGS 359

Query: 359 ERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDME 418
           ER+N+F GCP  +T T++LRGGA+Q I E ERSLHDAIMIV+RA +N  +VAGGGA +ME
Sbjct: 360 ERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRALQNKLIVAGGGATEME 419

Query: 419 ISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEG 478
           +SK LR  S+ IAGK Q  IN++AKALEVIPRQLC+NAGFDA ++LNKLR  H+      
Sbjct: 420 VSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHS---KGE 476

Query: 479 APYGVDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGEA 538
             YGV   T  I D+FA FVWEPA+VKINA+N+ATEA  LILSVDET+ N  SESA    
Sbjct: 477 KWYGVVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESANAGM 536

Query: 539 AASAMGGRGRGR 550
                 GRGRG 
Sbjct: 537 MPPQGAGRGRGM 548
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Length = 543 Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* Length = 562 Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Length = 543 Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Length = 545 Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Length = 553 Back     alignment and structure
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Length = 548 Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* Length = 527 Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Length = 513 Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* Length = 559 Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* Length = 528 Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 515 Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 529 Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* Length = 546 Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 518 Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* Length = 568 Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 517 Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Length = 500 Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Length = 512 Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 2bbm_B 2bbn_B Length = 590 Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Length = 178 Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Length = 159 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Length = 545 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Length = 546 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Length = 543 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Length = 547 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
3p9d_G550 T-complex protein 1 subunit ETA; HSP60, eukaryotic 100.0
1q3q_A548 Thermosome alpha subunit; chaperone, chaperonin; H 100.0
3ruv_A543 Chaperonin, CPN; double-ring, protein folding mach 100.0
3iyg_H515 T-complex protein 1 subunit ETA; TRIC/CCT, asymmet 100.0
1a6d_A545 Thermosome (alpha subunit); group II chaperonin, C 100.0
3ko1_A553 Chaperonin; 9-fold symmetry, double ring, ATP hydr 100.0
1a6d_B543 Thermosome (beta subunit); group II chaperonin, CC 100.0
3iyg_A529 T-complex protein 1 subunit alpha; TRIC/CCT, asymm 100.0
3iyg_B513 T-complex protein 1 subunit beta; TRIC/CCT, asymme 100.0
3iyg_G515 T-complex protein 1 subunit gamma; TRIC/CCT, asymm 100.0
3p9d_A559 T-complex protein 1 subunit alpha; HSP60, eukaryot 100.0
3p9d_D528 T-complex protein 1 subunit delta; HSP60, eukaryot 100.0
3p9d_E562 T-complex protein 1 subunit epsilon; HSP60, eukary 100.0
3iyg_D518 T-complex protein 1 subunit delta; TRIC/CCT, asymm 100.0
3iyg_Z517 T-complex protein 1 subunit zeta; TRIC/CCT, asymme 100.0
3iyg_E515 T-complex protein 1 subunit; TRIC/CCT, asymmetric, 100.0
3p9d_C590 T-complex protein 1 subunit gamma; HSP60, eukaryot 100.0
3p9d_B527 T-complex protein 1 subunit beta; HSP60, eukaryoti 100.0
3p9d_H568 T-complex protein 1 subunit theta; HSP60, eukaryot 100.0
3iyg_Q512 T-complex protein 1 subunit theta; TRIC/CCT, asymm 100.0
3p9d_F546 T-complex protein 1 subunit zeta; HSP60, eukaryoti 100.0
3aq1_B500 Thermosome subunit; group II chaperonin, protein f 100.0
1we3_A543 CPN60(groel); chaperonin, chaperone, groel, HSP60, 100.0
1iok_A545 Chaperonin 60; chaperone; 3.20A {Paracoccus denitr 100.0
1kp8_A547 Groel protein; chaperonin, assisted protein foldin 100.0
3rtk_A546 60 kDa chaperonin 2; heat shock protein, chaperone 100.0
1gml_A178 T-complex protein 1 subunit gamma; chaperone, chap 100.0
1ass_A159 Thermosome; chaperonin, HSP60, TCP1, groel, thermo 99.98
3m6c_A194 60 kDa chaperonin 1; chaperone, ATP-binding, nucle 99.47
1srv_A145 Protein (groel (HSP60 class)); chaperone, cell div 99.47
3osx_A201 60 kDa chaperonin; alpha, beta, apical domain, cha 99.42
>3p9d_G T-complex protein 1 subunit ETA; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_g* 4d8q_G* 4d8r_g* Back     alignment and structure
Probab=100.00  E-value=4e-119  Score=977.16  Aligned_cols=545  Identities=59%  Similarity=0.952  Sum_probs=496.4

Q ss_pred             ccchhHhhcccccccccchHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHH
Q 008702            4 MMQPQIILLKEGTDTSQGKAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILV   83 (557)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~   83 (557)
                      ||++|..+|+++++..+|.+++.+||.||.+|+++|++||||+||+|||+++.|+++|||||+|||++|+++||+|+|++
T Consensus         5 ~~~~~~~~l~~~~~~~~g~~a~~~ni~a~~~la~~vkttLGPkG~~kml~~~~G~~~ITnDG~TIlk~i~v~hP~Akll~   84 (550)
T 3p9d_G            5 SQTPTIVVLKEGTDASQGKGQIISNINACVAVQEALKPTLGPLGSDILIVTSNQKTTISNDGATILKLLDVVHPAAKTLV   84 (550)
T ss_dssp             -----------CCCEEESHHHHHHHHHHHHHHHTTTGGGSTTTCCCEEEECSSSCEEEECCHHHHTTTSCCCSHHHHHHH
T ss_pred             cCCcchhhhcCCcchhhhHHHHHHHHHHHHHHHHHHHhccCCCCCcEEEECCCCCeEEECCHHHHHHHccCCCHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcccccCCchhHHHHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHH
Q 008702           84 DIAKSQDSEVGDGTTTVVLLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAA  163 (557)
Q Consensus        84 ~~a~~~~~~~GDGttt~vvLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~  163 (557)
                      ++|++||+++||||||++|||++||+++.+++++|+||+.|++||++|++.+++.|++++++++..++ .+++.|.++|+
T Consensus        85 e~a~~qd~e~GDGTTtvvVLA~~Ll~~a~~lv~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~-~~~~~L~~vA~  163 (550)
T 3p9d_G           85 DISRAQDAEVGDGTTSVTILAGELMKEAKPFLEEGISSHLIMKGYRKAVSLAVEKINELAVDITSEKS-SGRELLERCAR  163 (550)
T ss_dssp             HHHHHHHTTTSSCHHHHHHHHHHHHHTTSHHHHSSSCTTHHHHHHHHHHHHHHHHHHHSEECCCCC-------CHHHHHH
T ss_pred             HHHHHhhhhhCCCceehHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCcc-hhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999875331 12678999999


Q ss_pred             HhhccCccCchhHHHHHHHHHHHHhhCCCC-CCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEE
Q 008702          164 TTLSSKLIGGEKEFFASMVVDAVGAIGDGD-RLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILL  242 (557)
Q Consensus       164 tsl~sk~~~~~~~~ls~lv~~Ai~~v~~~~-d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll  242 (557)
                      |+++||+++.++++|++|++||+.++++++ |.++|+|++++|++++||++++|++|+++|.||||.+||++++||||++
T Consensus       164 tsl~sK~~~~~~~~i~~livdAv~~V~~~~~dl~~I~Vikv~Gg~~~ds~lv~G~~~dk~~~s~yf~~~~~~~en~kIll  243 (550)
T 3p9d_G          164 TAMSSKLIHNNADFFVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFNNPKILS  243 (550)
T ss_dssp             HHHHHTTTGGGHHHHHHHHHHHHHHCCSSSCCGGGCCCCBCCSSCGGGCCCCSSEEECCCSSCTTCSCSCSCCSSCCEEE
T ss_pred             HhccCccccccHhHHHHHHHHHHHHhCccccCchheeEEEecCCCccceeEEeeEEEeccccccccccCcccccCceEEE
Confidence            999999999999999999999999998655 8899999999999999999999999999999999999999999999999


Q ss_pred             eeccccccccccCceEEecCHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHH
Q 008702          243 LNIELELKSEKENAEIRLSDPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDL  322 (557)
Q Consensus       243 ~~~~Le~~~~~~~~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~l  322 (557)
                      +|++|++++++.++++.+++++++.++.+.|++++++++++|++.|++||+++++|++.+++||+++||++++++++++|
T Consensus       244 ~~~~Le~~k~e~~~~v~is~~~~l~~il~~E~~~l~~~v~~I~~~g~~vVi~~~~I~dla~~~L~~~gI~~v~~v~k~~l  323 (550)
T 3p9d_G          244 LNVELELKAEKDNAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANIVLSKLPIGDLATQFFADRNIFCAGRVSADDM  323 (550)
T ss_dssp             ECSCCSCCCCSSCEEEEECSSSHHHHHHHHHHHHHHHHHHHHHTTTCSEEEESSCCCHHHHHTTGGGTCEEEECCCTTHH
T ss_pred             eccccccccccccceeeeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccHHHHHHHHHcCCccccCcCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCeecccccCCCCCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHH
Q 008702          323 LRVAAATGGTVQTSVNNVVDEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRA  402 (557)
Q Consensus       323 e~Ia~~tGa~ii~s~~~l~~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~  402 (557)
                      +|||++|||++++++++++++++|+|+.|++.++++++|++|+||+++++|||+|||+|+.+++|.||+++|||+++|++
T Consensus       324 erIa~~tGa~iis~l~~l~~~~LG~a~~v~~~~ig~e~~~~~~g~~~~~~~tI~lrG~te~~l~E~kr~l~DAl~~~r~a  403 (550)
T 3p9d_G          324 NRVIQAVGGSIQSTTSDIKPEHLGTCALFEEMQIGSERYNLFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMIVKRA  403 (550)
T ss_dssp             HHHHHHTCCCCBSSGGGCCGGGCCCCSBCCCCCCSSSCCEEEBCCTTCCCCCCCBCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCceecchhhCCHHHcCCceEEEEEEeCCeEEEEEecCCCCceeEEEEeCCcHHHHHHHHHHHHhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhCCceecCCchhHHHHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeE
Q 008702          403 TKNSTVVAGGGAIDMEISKYLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYG  482 (557)
Q Consensus       403 ~~~g~vvpGGG~~e~~l~~~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~G  482 (557)
                      +++|++|||||++|++++.+|++++.+.++++|+++++|++||+.||++|++|||+|+.+++.+|++.|..  |+ .++|
T Consensus       404 v~~g~iVpGGGa~e~~~s~~L~~~~~~~~g~eq~~i~~~a~ALe~ip~~La~NaG~d~~~vv~~l~~~h~~--~~-~~~G  480 (550)
T 3p9d_G          404 LQNKLIVAGGGATEMEVSKCLRDYSKTIAGKQQMIINAFAKALEVIPRQLCENAGFDAIEILNKLRLAHSK--GE-KWYG  480 (550)
T ss_dssp             HHSCCEEETTTHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHTHHHHHHHHTSCSCHHHHHHHHHHHHHH--SC-SCCC
T ss_pred             HhcCCcccCCCHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhc--CC-Ccee
Confidence            99999999999999999999999998899999999999999999999999999999999999999998865  55 7899


Q ss_pred             EecCCCcccccccCCcccchHHHHHHHHHHHHHHHHHhchhhhhcCCCCCcccccccccCCCCCCCCCCCCCCC
Q 008702          483 VDINTGGIADSFANFVWEPAVVKINAINAATEAACLILSVDETVKNPKSESAQGEAAASAMGGRGRGRGRGMRR  556 (557)
Q Consensus       483 id~~~g~~~d~~~~gi~dp~~vk~~~l~~A~e~a~~lL~id~iI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  556 (557)
                      ||+.+|++.||++.|||||+.||+++|++|+|+|++||+||++|...|.+++++++ ++++| +|  +|+||.|
T Consensus       481 ~d~~~g~~~dm~~~gI~dp~~vk~~al~~A~~~a~~iL~id~ii~~~~~~~~~~~~-~~~~~-~~--~~~~~~~  550 (550)
T 3p9d_G          481 VVFETENIGDNFAKFVWEPALVKINALNSATEATNLILSVDETITNKGSESANAGM-MPPQG-AG--RGRGMPM  550 (550)
T ss_dssp             BCSSSSSBCCHHHHTCEEEHHHHHHHHHHHHHHHHHHHTEEEEECCCCCC------------------------
T ss_pred             eeCCCCcccchHhccCEecHHHHHHHHHHHHHHHHHHHhHHHHhhCCCcccccCCC-CCCCC-CC--CCCCCCC
Confidence            99999999999999999999999999999999999999999999998887665432 23444 33  3455543
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A Back     alignment and structure
>3ruv_A Chaperonin, CPN; double-ring, protein folding machinery, group II chaperonin, binding, chaperone; HET: ANP; 2.24A {Methanococcus maripaludis} PDB: 3rus_A* 3ruw_A* 3ruq_A* 3los_A 3kfb_A* 3izi_A 3izj_A 3izm_A 3izh_A 3kfe_A* 3iyf_A* 3kfk_A* 3izk_A 3izl_A 3j03_A 3izn_A 3j02_A Back     alignment and structure
>3iyg_H T-complex protein 1 subunit ETA; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A* Back     alignment and structure
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis} Back     alignment and structure
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B Back     alignment and structure
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_B T-complex protein 1 subunit beta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} PDB: 3ktt_B 4a0o_A 4a0v_A 4a0w_A 4a13_A Back     alignment and structure
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a* 4d8q_A* 4d8r_a* Back     alignment and structure
>3p9d_D T-complex protein 1 subunit delta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_d* 4d8q_D* 4d8r_d* Back     alignment and structure
>3p9d_E T-complex protein 1 subunit epsilon; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_e* 4d8q_E* 4d8r_e* Back     alignment and structure
>3iyg_D T-complex protein 1 subunit delta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3iyg_E T-complex protein 1 subunit; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_C T-complex protein 1 subunit gamma; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_c* 4d8q_C* 4d8r_c* 2bbm_B 2bbn_B Back     alignment and structure
>3p9d_B T-complex protein 1 subunit beta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_b* 4d8q_B* 4d8r_b* Back     alignment and structure
>3p9d_H T-complex protein 1 subunit theta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_h* 4d8q_H* 4d8r_h* Back     alignment and structure
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus} Back     alignment and structure
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f* Back     alignment and structure
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii} Back     alignment and structure
>1we3_A CPN60(groel); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1wf4_a* Back     alignment and structure
>1iok_A Chaperonin 60; chaperone; 3.20A {Paracoccus denitrificans} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 Back     alignment and structure
>1kp8_A Groel protein; chaperonin, assisted protein folding, chaperone; HET: ATP; 2.00A {Escherichia coli} SCOP: a.129.1.1 c.8.5.1 d.56.1.1 PDB: 1gr5_A 2c7e_A* 1grl_A 1oel_A 1xck_A 1gru_A 1mnf_A 1aon_A 2c7c_A 2c7d_A 2cgt_A 2nwc_A 3e76_A* 2eu1_A 1j4z_A 1kpo_O 1sx3_A* 3c9v_A 1ss8_A 3cau_A ... Back     alignment and structure
>3rtk_A 60 kDa chaperonin 2; heat shock protein, chaperone; 2.80A {Mycobacterium tuberculosis} PDB: 1sjp_A Back     alignment and structure
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin, tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A Back     alignment and structure
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP: c.8.5.2 PDB: 1asx_A Back     alignment and structure
>3m6c_A 60 kDa chaperonin 1; chaperone, ATP-binding, nucleotide-binding; 2.20A {Mycobacterium tuberculosis} Back     alignment and structure
>1srv_A Protein (groel (HSP60 class)); chaperone, cell division, ATP-binding, phosphorylation; 1.70A {Thermus thermophilus} SCOP: c.8.5.1 Back     alignment and structure
>3osx_A 60 kDa chaperonin; alpha, beta, apical domain, chaperone; 1.55A {Xenorhabdus nematophila} SCOP: c.8.5.1 PDB: 1kid_A 1fy9_A 1la1_A 1fya_A 1jon_A 1dk7_A 1dkd_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 557
d1gmla_168 c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musc 2e-43
d1assa_152 c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermo 3e-40
d1q3qa2153 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon 3e-40
d1a6db2152 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon 1e-39
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-35
d1q3qa1258 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain 4e-15
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 2e-33
d1a6da1245 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domai 9e-26
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 3e-32
d1a6db1243 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domai 7e-27
d1kp8a1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Esc 9e-20
d1ioka1252 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Par 2e-19
d1a6db3107 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domai 1e-17
d1q3qa3107 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domai 1e-16
d1a6da3105 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domai 1e-16
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 1e-15
d1we3a1255 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {The 4e-11
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 3e-10
d1sjpa1180 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {My 7e-09
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Length = 168 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: The "swivelling" beta/beta/alpha domain
superfamily: GroEL apical domain-like
family: Group II chaperonin (CCT, TRIC), apical domain
domain: Thermosome, A-domain
species: Mouse (Mus musculus), gamma chain [TaxId: 10090]

 Score =  150 bits (379), Expect = 2e-43
 Identities = 44/171 (25%), Positives = 80/171 (46%), Gaps = 4/171 (2%)

Query: 210 DSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLSDPSQYQSI 269
           DS ++ GV   K  ++       +   NP+I+LL+  LE K  +   +I ++    +  I
Sbjct: 1   DSCVLRGVMINKDVTHPRM---RRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRI 57

Query: 270 VDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAAT 329
           +  E   I+   +  +Q    VV++   I DLA  Y    ++    RV + D  R+A A 
Sbjct: 58  LQMEEEYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARAC 117

Query: 330 GGTVQTSVNNVVDEVLGT-CEHFEERQVGNERFNIFSGCPSGRTATIVLRG 379
           G  + +    + ++ +GT     E +++G+E F   + C   +  TI+LRG
Sbjct: 118 GARIVSRPEELREDDVGTGAGLLEIKKIGDEYFTFITDCKDPKACTILLRG 168
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 153 Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 152 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 258 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 245 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 243 Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Length = 252 Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Length = 252 Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Length = 107 Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Length = 107 Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Length = 105 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Length = 255 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Length = 180 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d1a6db1243 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1a6da1245 Thermosome, E domain {Archaeon Thermoplasma acidop 100.0
d1q3qa1258 Thermosome, E domain {Archaeon Thermococcus sp. ks 100.0
d1we3a1255 GroEL, E domain {Thermus thermophilus [TaxId: 274] 100.0
d1gmla_168 Thermosome, A-domain {Mouse (Mus musculus), gamma 100.0
d1ioka1252 GroEL, E domain {Paracoccus denitrificans [TaxId: 100.0
d1kp8a1252 GroEL, E domain {Escherichia coli [TaxId: 562]} 99.97
d1q3qa2153 Thermosome, A-domain {Archaeon Thermococcus sp. ks 99.97
d1a6db2152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1assa_152 Thermosome, A-domain {Archaeon Thermoplasma acidop 99.97
d1sjpa1180 GroEL, E domain {Mycobacterium tuberculosis, GroEL 99.93
d1q3qa3107 Thermosome, I domain {Archaeon Thermococcus sp. ks 99.48
d1a6da3105 Thermosome, I domain {Archaeon Thermoplasma acidop 99.46
d1kida_193 GroEL, A domain {Escherichia coli [TaxId: 562]} 99.43
d1a6db3107 Thermosome, I domain {Archaeon Thermoplasma acidop 99.4
d1srva_145 GroEL, A domain {Thermus thermophilus [TaxId: 274] 99.39
d1sjpa2184 GroEL, A domain {Mycobacterium tuberculosis, GroEL 99.38
d1ioka2176 GroEL, A domain {Paracoccus denitrificans [TaxId: 99.35
d1sjpa389 GroEL, I domain {Mycobacterium tuberculosis, GroEL 98.1
d1we3a386 GroEL, I domain {Thermus thermophilus [TaxId: 274] 97.03
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 96.85
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 96.63
d1ioka397 GroEL, I domain {Paracoccus denitrificans [TaxId: 89.67
d1kp8a397 GroEL, I domain {Escherichia coli [TaxId: 562]} 83.26
>d1a6db1 a.129.1.2 (B:20-144,B:404-521) Thermosome, E domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
class: All alpha proteins
fold: GroEL equatorial domain-like
superfamily: GroEL equatorial domain-like
family: Group II chaperonin (CCT, TRIC), ATPase domain
domain: Thermosome, E domain
species: Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]

Probab=100.00  E-value=2.6e-52  Score=405.36  Aligned_cols=243  Identities=45%  Similarity=0.707  Sum_probs=230.7

Q ss_pred             hHHHHHHHHHHHHHHHHhhhccCCCCCceeeeCCCCCeEEecCHHHHhhhccccChHHHHHHHHHHhcccccCCchhHHH
Q 008702           22 KAQLVSNINACTAVADVVRSTLGPRGMDKLIHDDKGTVTISNDGATIMKLLDIVHPAAKILVDIAKSQDSEVGDGTTTVV  101 (557)
Q Consensus        22 ~~~~~~n~~~~~~l~~~v~~slGP~G~~k~i~~~~g~~~iTnDG~tIl~~l~~~hP~a~ll~~~a~~~~~~~GDGttt~v  101 (557)
                      .++++.|+.||..++++|++||||+|++|||+++.|++++||||+||++++.++||.++++++++++|++++||||||++
T Consensus         1 ~~a~~~ni~a~~~i~~~v~~tlGP~g~~~~i~~~~g~~~iT~Dg~ti~~~~~~~~~~a~~~~~~~~~~~~~~GDGttt~~   80 (243)
T d1a6db1           1 KDAMKENIEAAIAISNSVRSSLGPRGMDKMLVDSLGDIVITNDGVTILKEMDVEHPAAKMMVEVSKTQDSFVGDGTTTAV   80 (243)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTSSTTCCCEEEECTTCCEEEECCHHHHHHHSCCCSHHHHHHHHHHTCTTCCCTTHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHhCCcCCCCCeEEEECCCCCeEEecchhhHhhhhhccchHHHHHHHHHHHHHHHhhcCCcchH
Confidence            37899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhcccccCCChHHHHHHHHHHHHHhhccCccCchhHHHHHH
Q 008702          102 LLAAEFLREAKPFIEDGVHPQNLIRSFRNASYKAIQKVKELAKSIEGQSLEEKKRLLSKCAATTLSSKLIGGEKEFFASM  181 (557)
Q Consensus       102 vLa~~Ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~~~~l~~ia~tsl~sk~~~~~~~~ls~l  181 (557)
                      +|+++||+++.+++.+|+||..|++||+.|++.+++.|++++.++..                                 
T Consensus        81 vl~~~ll~~~~~~i~~G~~p~~I~~g~~~a~~~~~~~L~~~a~~v~~---------------------------------  127 (243)
T d1a6db1          81 IIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIAY---------------------------------  127 (243)
T ss_dssp             HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECEE---------------------------------
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhcccccc---------------------------------
Confidence            99999999999999999999999999999999999888776554321                                 


Q ss_pred             HHHHHHhhCCCCCCCCceeeeecCCCcccceEEEeEEEeccccCCCCCCCCccccCceEEEeeccccccccccCceEEec
Q 008702          182 VVDAVGAIGDGDRLNMIGIKKVPGGTMRDSFLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNIELELKSEKENAEIRLS  261 (557)
Q Consensus       182 v~~Ai~~v~~~~d~~~I~i~~i~gg~~~ds~li~Givl~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~~~~~~~~~~i~  261 (557)
                                         .                                                            
T Consensus       128 -------------------~------------------------------------------------------------  128 (243)
T d1a6db1         128 -------------------A------------------------------------------------------------  128 (243)
T ss_dssp             -------------------E------------------------------------------------------------
T ss_pred             -------------------c------------------------------------------------------------
Confidence                               0                                                            


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEecCcccHHHHHHHHhCCcccccCCChHHHHHHHHHhCCeecccccCCC
Q 008702          262 DPSQYQSIVDAEWNIIYDKLDKCVQSGAKVVLSRLAIGDLATQYFADRDIFCAGRVAEEDLLRVAAATGGTVQTSVNNVV  341 (557)
Q Consensus       262 ~~~~~~~~~~~E~~~i~~~v~~i~~~~~~lii~~~~i~~~al~~l~~~~I~~v~~v~~~~le~Ia~~tGa~ii~s~~~l~  341 (557)
                                                                                                      
T Consensus       129 --------------------------------------------------------------------------------  128 (243)
T d1a6db1         129 --------------------------------------------------------------------------------  128 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCccccceEEEEEECCeeEEEEEcCCCCceEEEEeecCCHHHHHHHHHHHHHHHHHHHHHhhCCceecCCchhHHHHHH
Q 008702          342 DEVLGTCEHFEERQVGNERFNIFSGCPSGRTATIVLRGGADQFIEEAERSLHDAIMIVRRATKNSTVVAGGGAIDMEISK  421 (557)
Q Consensus       342 ~~~lG~~~~v~~~~ig~~~~~~~~g~~~~~~~TIll~G~t~~~l~e~k~~i~dal~~~~~~~~~g~vvpGGG~~e~~l~~  421 (557)
                                                                                          ||||++|+.++.
T Consensus       129 --------------------------------------------------------------------~ggGa~e~~~a~  140 (243)
T d1a6db1         129 --------------------------------------------------------------------AGGGATAAEIAF  140 (243)
T ss_dssp             --------------------------------------------------------------------ETTTHHHHHHHH
T ss_pred             --------------------------------------------------------------------cCCCchhHHHHH
Confidence                                                                                069999999999


Q ss_pred             HHHHHHhhhcchHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHccCCCCCCCCeEEecCCCcccccccCCcccc
Q 008702          422 YLRQESRAIAGKSQFFINSYAKALEVIPRQLCDNAGFDATDVLNKLRQKHALPTGEGAPYGVDINTGGIADSFANFVWEP  501 (557)
Q Consensus       422 ~L~~~~~~~~~~~~~~~~~~a~aL~~ip~~L~~NaG~d~~~~l~~l~~~~~~~~~~~~~~Gid~~~g~~~d~~~~gi~dp  501 (557)
                      .|.++++++++++|+++++|++||+.||++|++|+|+|+.+++.+|+..|..  ++ .++|+|..+|++.||.+.|||||
T Consensus       141 ~l~~~a~~~~g~~q~~i~~~a~Ale~ip~~LaeNaG~d~~~~i~~l~~~h~~--~~-~~~Gvd~~~g~i~d~~~~gV~dp  217 (243)
T d1a6db1         141 RLRSYAQKIGGRQQLAIEKFADAIEEIPRALAENAGLDPIDILLKLRAEHAK--GN-KTYGINVFTGEIEDMVKNGVIEP  217 (243)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHTHHHHHHHHHHTCCHHHHHHHHHHHHHT--TC-TTEEEETTTTEEEETTTTTCEEE
T ss_pred             HHhhhhhccCCHHHHHHHHHHHHhhccCccccccCCCChhHHHHHHHHHHhC--CC-CceeEECcCCEEeehHhcccEec
Confidence            9999999999999999999999999999999999999999999999999876  66 88999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHhchhhhhc
Q 008702          502 AVVKINAINAATEAACLILSVDETVK  527 (557)
Q Consensus       502 ~~vk~~~l~~A~e~a~~lL~id~iI~  527 (557)
                      +.||+++|+.|+|+|++|||||++|.
T Consensus       218 ~~vk~~ai~~A~e~a~~iL~iD~iis  243 (243)
T d1a6db1         218 IRVGKQAIESATEAAIMILRIDDVIA  243 (243)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999874
>d1a6da1 a.129.1.2 (A:17-145,A:404-519) Thermosome, E domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1q3qa1 a.129.1.2 (A:9-145,A:406-526) Thermosome, E domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1we3a1 a.129.1.1 (A:3-138,A:409-527) GroEL, E domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1gmla_ c.8.5.2 (A:) Thermosome, A-domain {Mouse (Mus musculus), gamma chain [TaxId: 10090]} Back     information, alignment and structure
>d1ioka1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a1 a.129.1.1 (A:2-136,A:410-526) GroEL, E domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1q3qa2 c.8.5.2 (A:217-369) Thermosome, A-domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6db2 c.8.5.2 (B:216-367) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1assa_ c.8.5.2 (A:) Thermosome, A-domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1sjpa1 a.129.1.1 (A:62-134,A:408-514) GroEL, E domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1q3qa3 d.56.1.2 (A:146-216,A:370-405) Thermosome, I domain {Archaeon Thermococcus sp. ks-1, alpha chain [TaxId: 79679]} Back     information, alignment and structure
>d1a6da3 d.56.1.2 (A:146-214,A:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, alpha chain [TaxId: 2303]} Back     information, alignment and structure
>d1kida_ c.8.5.1 (A:) GroEL, A domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1a6db3 d.56.1.2 (B:145-215,B:368-403) Thermosome, I domain {Archaeon Thermoplasma acidophilum, beta chain [TaxId: 2303]} Back     information, alignment and structure
>d1srva_ c.8.5.1 (A:) GroEL, A domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1sjpa2 c.8.5.1 (A:189-372) GroEL, A domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1ioka2 c.8.5.1 (A:191-366) GroEL, A domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1sjpa3 d.56.1.1 (A:135-188,A:373-407) GroEL, I domain {Mycobacterium tuberculosis, GroEL2 [TaxId: 1773]} Back     information, alignment and structure
>d1we3a3 d.56.1.1 (A:139-189,A:374-408) GroEL, I domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1ioka3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Paracoccus denitrificans [TaxId: 266]} Back     information, alignment and structure
>d1kp8a3 d.56.1.1 (A:137-190,A:367-409) GroEL, I domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure