Citrus Sinensis ID: 008706

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MGVLRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDPMKLATSPNTKSSSTSSSSSSSWKKDSSMQFGIPIPIICDWLNQHWEGNLDELTKPKLPIIRLMSTGQKSEHSCASFTMRQVFKSTDDGNERTPSSSNIFSKARDQTGPGCSAGVSIREEETLSMDPHATHVQGIPTPEIYESPKLTSVPIQKKASSQIQLLDINFPPRVAKPMVSLKPLKRLSLNSDDNCDNEPHPDSPPREEDEIKDRGLISPNAEAENADIASTGSVNGVQSEVQSSSSPVEVLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQVGRSQSCVGYNRWGDVQRNSMPRQTLTEKQSSLIHGKKMYSQGATSQRSNDHYFSPTVSSIMKKRNNSEQPRPSKPRPSAVHSSPRWMF
ccccccccEEEcccccHHHHHHcEEcccccEEEEEEEccccccccEEEEEccEEEEcccccccHHHHHHHHHHHcccccccccccEEEEEccccEEEEEEccccccccccccccccccccccccccccccEEEEEEcccccEEEEEccEEEEEcccEEEEcccccccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccEEEccccccccccccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccccccccccccccccc
ccccccccEEcccccHHHHHHHHHHHccHHHHHEEEcccccccccEEEEEHcEHHHcccccHHHHHHHHHHHHHHHcHHHHcccccEEEEcccEEEEEEEEEccccccccccccccEcEcccccccccccEEEEEEcccccEEEEcccEEEEEcccEEEEccccEEEccccccccccccEEEEEEccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHccccccccEEEEccccccccccccHccEEEEcccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccEHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHEHHHHccccccccccccccccccccccccccccccccEEccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccccHHHHHHHcccccccccccccccHEcccccccc
mgvlreswcfckgvsKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLtthvnlpsvaaAETAEIRLQNGVAAALVPHRFFITSSVLDLTIvgldsadgdsnapgqqphhlktcskpnldlgSIVYLLGYMEEKELMVGEGKVAIATDNLiklstdgiiwspgsagfdvqgnlafmicdpmklatspntkssstssssssswkkdssmqfgipipIICDWLnqhwegnldeltkpklpiirlmstgqksehscasfTMRQVfkstddgnertpsssnifskardqtgpgcsagvsireeetlsmdphathvqgiptpeiyespkltsvpiqkkassqiqlldinfpprvakpmvslkplkrlslnsddncdnephpdsppreedeikdrglispnaeaenadiastgsvngvqsevqsssspvevlgmyngyssegettmysaetaesrnytipregkfqqvgrsqscvgynrwgdvqrnsmprqtltEKQSSlihgkkmysqgatsqrsndhyfsptvSSIMKkrnnseqprpskprpsavhssprwmf
mgvlreswcfckgvskteRMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADGDSNAPGQQphhlktcskpnlDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDPMKLatspntkssstssssssswkkdssMQFGIPIPIICDWLNQHWEGNLDELTKPKLPIIRLMSTGQKSEHSCASFTMRQVFKstddgnertpsssnifskardqtgpgCSAGVSIREEETLSMDPHATHVQGIPTPEIYESPKLTSVPIQKKASSQIQLLDINFPPRVAKPMVSLKPLKRlslnsddncdnephpdsppreedeiKDRGLISPNAEAENADIASTGSVNGVQsevqsssspveVLGMYNGYSSEGETTMYSAETAESRNYTIpregkfqqvgrsQSCVGYNRWgdvqrnsmprqtLTEKQSSLIHGKKMYsqgatsqrsndHYFSPTVSSIMKkrnnseqprpskprpsavhssprwmf
MGVLRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDPMKLAtspntkssstssssssswkkdssMQFGIPIPIICDWLNQHWEGNLDELTKPKLPIIRLMSTGQKSEHSCASFTMRQVFKSTDDGNERTPSSSNIFSKARDQTGPGCSAGVSIREEETLSMDPHATHVQGIPTPEIYESPKLTSVPIQKKASSQIQLLDINFPPRVAKPMVSLKPLKRLSLNSDDNCDNEPHPDSPPREEDEIKDRGLISPNAEAENADIASTgsvngvqsevqsssspvevLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQVGRSQSCVGYNRWGDVQRNSMPRQTLTEKQSSLIHGKKMYSQGATSQRSNDHYFSPTVSSIMKKRNNSEQPRPSKPRPSAVHSSPRWMF
***LRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLD********************KPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDPM***************************QFGIPIPIICDWLNQHWEGNLDELTKPKLPIIRLM***********************************************************************************************QLLDINF*************************************************************************************************************************SCVGYNRWG***************************************************************************
*GVLRESWCFCKGVSKTERMKAAIFSGKGLA************GTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSAD***********HLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDP******************************GIPIPIICDWLNQHWEGNLDELTKPKLPII********************V****************************************************I*************************LLDINFPPRVAKPMVSLKP******************************************A*I**********************************************************************************************************************************************PRWMF
MGVLRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADG***********LKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDPMKLA**********************SMQFGIPIPIICDWLNQHWEGNLDELTKPKLPIIRLMS*********ASFTMRQVFKS***********SNIFSKA*********AGVSIREEETLSMDPHATHVQGIPTPEIYESPKLTSVPIQKKASSQIQLLDINFPPRVAKPMVSLKPLKRLSLNSDD******************KDRGLISPNAEAENADIASTGS*************PVEVLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQVGRSQSCVGYNRWGDVQRNSMPRQTLTEKQSSLIHG************SNDHYFSPTVSSIMK**************************
***LRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDPMKL***********************SMQFGIPIPIICDWLNQHWEGNLDELTKPKLPIIRLMST*******C*SFTMR**F*S************************************TLSMDPHATHVQGIPTPEIYESPKLTSVPIQKKASSQIQLLDINFPPRVAKPMVSLKPLKRLSL***********************************************************E**********************************FQQ*GRSQSCVGYN***********************************************S******************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGVLRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNLAFMICDPMKLATSPNTKSSSTSSSSSSSWKKDSSMQFGIPIPIICDWLNQHWEGNLDELTKPKLPIIRLMSTGQKSEHSCASFTMRQVFKSTDDGNERTPSSSNIFSKARDQTGPGCSAGVSIREEETLSMDPHATHVQGIPTPEIYESPKLTSVPIQKKASSQIQLLDINFPPRVAKPMVSLKPLKRLSLNSDDNCDNEPHPDSPPREEDEIKDRGLISPNAEAENADIASTGSVNGVQSEVQSSSSPVEVLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQVGRSQSCVGYNRWGDVQRNSMPRQTLTEKQSSLIHGKKMYSQGATSQRSNDHYFSPTVSSIMKKRNNSEQPRPSKPRPSAVHSSPRWMF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
296084621547 unnamed protein product [Vitis vinifera] 0.980 0.998 0.740 0.0
225467717534 PREDICTED: uncharacterized protein LOC10 0.956 0.998 0.736 0.0
224069854551 predicted protein [Populus trichocarpa] 0.985 0.996 0.749 0.0
356566361550 PREDICTED: uncharacterized protein LOC10 0.965 0.978 0.702 0.0
449464130549 PREDICTED: uncharacterized protein LOC10 0.983 0.998 0.675 0.0
356524473554 PREDICTED: uncharacterized protein LOC10 0.962 0.967 0.689 0.0
297833502546 hypothetical protein ARALYDRAFT_896879 [ 0.949 0.968 0.635 1e-175
18397873547 uncharacterized protein [Arabidopsis tha 0.949 0.967 0.627 1e-171
449475488495 PREDICTED: uncharacterized LOC101211454 0.833 0.937 0.658 1e-163
242055381550 hypothetical protein SORBIDRAFT_03g04379 0.965 0.978 0.550 1e-135
>gi|296084621|emb|CBI25671.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  787 bits (2033), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 413/558 (74%), Positives = 457/558 (81%), Gaps = 12/558 (2%)

Query: 1   MGVLRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVN 60
           MGVL ESWCFCKG  K+ERMKA IF+ KG AMA IS ++SA   TGFLIHRNLLLTTHVN
Sbjct: 1   MGVLGESWCFCKGAGKSERMKANIFTAKGPAMATISSSSSA---TGFLIHRNLLLTTHVN 57

Query: 61  LPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADGDSNAPGQQPHHLKT 120
           LPS+AAAE +EIRLQ+GV A L PHRFFITSSVLDLTIVGLD+ DGDS A GQQPH+LKT
Sbjct: 58  LPSLAAAEASEIRLQDGVPATLFPHRFFITSSVLDLTIVGLDTVDGDSTAQGQQPHYLKT 117

Query: 121 CSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQGNL 180
           CSKPNLDLGS+VYLLGY E+KEL VGEGKV IATDNLIK+STDG+ WSPGSAGFD QGNL
Sbjct: 118 CSKPNLDLGSVVYLLGYTEKKELTVGEGKVVIATDNLIKMSTDGVTWSPGSAGFDAQGNL 177

Query: 181 AFMICDPMKLATSPNTKSSSTSSSSSSSWKKDSSMQFGIPIPIICDWLNQHWEGNLDELT 240
           AFMICDPMKLATSP TKSSSTSSSSSSSWKKD  MQFGIPIPIICDWLNQHWEG+LDEL 
Sbjct: 178 AFMICDPMKLATSPITKSSSTSSSSSSSWKKDLPMQFGIPIPIICDWLNQHWEGSLDELN 237

Query: 241 KPKLPIIRLMSTGQKSEHSCASFTMRQVFKSTDDGNERTPSSSNIFSKARDQTGPG-CSA 299
           KPKLP+IRLMSTGQKSE SC SFTMR+VFKSTD  N+ TPSSSNI SK RDQ GP  CS 
Sbjct: 238 KPKLPLIRLMSTGQKSEPSCTSFTMRRVFKSTDADNDGTPSSSNIISKTRDQRGPATCST 297

Query: 300 GVSIREEETLSMDPHATHVQGIPTPEIYESPKLTSVPIQKKASSQIQLLDINFPPRVAKP 359
             +  EE   + DPHATH+QGIPTPEIYESPKLT++P++ K SSQIQLLDINFPP+VAK 
Sbjct: 298 AANTFEEVVHTTDPHATHLQGIPTPEIYESPKLTAIPVRMKESSQIQLLDINFPPQVAKA 357

Query: 360 MVSLKPLKRLSLNSDDNCDNEPHPDSPPREEDEIKDRGLISPNAEAENADIASTGSVNGV 419
            V  +  K L  NSD+N       D    +E + ++R +   +A+AE   IASTGSVN  
Sbjct: 358 TVP-QIAKPLPSNSDENHVRGLSLDD-GLQEKQFENRDMARSDADAE---IASTGSVNVA 412

Query: 420 QSEVQSSSSPVEVLGMYNGYSSEGETTMYSAETAESRNYTIPREGKFQQVGRSQSCVGYN 479
            SEVQSSSSPVE+  + NGYSSEGE TMYSAETAESRNYT PREG+FQQVGRSQSCV YN
Sbjct: 413 HSEVQSSSSPVEISELQNGYSSEGE-TMYSAETAESRNYTSPREGRFQQVGRSQSCVSYN 471

Query: 480 RWGDVQRNSMPRQTLTEKQSSLIHGKKMYSQGATSQRSNDHYFSPTVSSIMKKRNNSEQP 539
           RWG  QRN M R+   E+Q S I G+KM+SQGATSQRSND YF PTVSSIMKKRNN+ + 
Sbjct: 472 RWGTGQRNPMTRRAYLEQQRSFIQGRKMHSQGATSQRSND-YFGPTVSSIMKKRNNNSE- 529

Query: 540 RPSKPRPSAVHSSPRWMF 557
           +PSKPR SAVHSSPRWMF
Sbjct: 530 QPSKPRQSAVHSSPRWMF 547

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225467717|ref|XP_002262639.1| PREDICTED: uncharacterized protein LOC100259020 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224069854|ref|XP_002303056.1| predicted protein [Populus trichocarpa] gi|222844782|gb|EEE82329.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356566361|ref|XP_003551401.1| PREDICTED: uncharacterized protein LOC100812315 [Glycine max] Back     alignment and taxonomy information
>gi|449464130|ref|XP_004149782.1| PREDICTED: uncharacterized protein LOC101211454 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356524473|ref|XP_003530853.1| PREDICTED: uncharacterized protein LOC100817940 [Glycine max] Back     alignment and taxonomy information
>gi|297833502|ref|XP_002884633.1| hypothetical protein ARALYDRAFT_896879 [Arabidopsis lyrata subsp. lyrata] gi|297330473|gb|EFH60892.1| hypothetical protein ARALYDRAFT_896879 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18397873|ref|NP_566301.1| uncharacterized protein [Arabidopsis thaliana] gi|6642644|gb|AAF20225.1|AC012395_12 hypothetical protein [Arabidopsis thaliana] gi|14334614|gb|AAK59485.1| unknown protein [Arabidopsis thaliana] gi|18491191|gb|AAL69498.1| unknown protein [Arabidopsis thaliana] gi|21592441|gb|AAM64392.1| unknown [Arabidopsis thaliana] gi|332640994|gb|AEE74515.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449475488|ref|XP_004154469.1| PREDICTED: uncharacterized LOC101211454 [Cucumis sativus] Back     alignment and taxonomy information
>gi|242055381|ref|XP_002456836.1| hypothetical protein SORBIDRAFT_03g043790 [Sorghum bicolor] gi|241928811|gb|EES01956.1| hypothetical protein SORBIDRAFT_03g043790 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2098490547 AT3G07210 "AT3G07210" [Arabido 0.956 0.974 0.511 9.3e-130
TAIR|locus:2098490 AT3G07210 "AT3G07210" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1273 (453.2 bits), Expect = 9.3e-130, P = 9.3e-130
 Identities = 292/571 (51%), Positives = 357/571 (62%)

Query:     1 MGVLRESWCFCKGVSKTERMKAAIFSGKGLAMARISVAA--SAVSGTGFLIHRNLLLTTH 58
             MGV+ +SWCFCKGV K+E+MK +IF+GK  AMARISV+      SGTGFLIHRNLLLTTH
Sbjct:     1 MGVILDSWCFCKGVGKSEKMKGSIFTGKAPAMARISVSGPNGVTSGTGFLIHRNLLLTTH 60

Query:    59 VNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVLDLTIVGLDSADGDSNAPGQ---QP 115
             +NLPS++A ETAE+RLQNGVAAAL PHRFFITSSV+DLTIVGLD  DGDS++  Q   QP
Sbjct:    61 LNLPSISATETAEVRLQNGVAAALFPHRFFITSSVIDLTIVGLDLVDGDSSSQSQLQQQP 120

Query:   116 HHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFD 175
             H+LKTCSKPNLDLGS+VYLLGY  + EL +GEGK+ +ATDNLIKLSTD +IWSPGSAGFD
Sbjct:   121 HYLKTCSKPNLDLGSVVYLLGYANQNELKIGEGKLVVATDNLIKLSTDEMIWSPGSAGFD 180

Query:   176 VQGNLAFMICDPMKLAXXXXXXXXXXXXXXXXXXXXXXXMQFGIPIPIICDWLNQHWEGN 235
             VQGNLAFMICDP KL+                       MQFGIPIP+ICDWLNQHWEG+
Sbjct:   181 VQGNLAFMICDPRKLSTSPTSTSSSSSSSLKKDNNKTLMMQFGIPIPVICDWLNQHWEGS 240

Query:   236 LDELTKPKLPIIRLMSTGQKSEHSCASFTMRQVFKSTDDGNERTPSSSNIFSKARDQTGP 295
             LDE T    P + L+      + S  S T   + +     N+     +   S  RDQT P
Sbjct:   241 LDEHTTK--PKLPLIRLMSSGQKSERSCTSFTM-RRVFKPNDSADVGTPSSSNTRDQTHP 297

Query:   296 GCS-AGVSIREEETLSMDPHATHVQGIPT-PEIYESPKLTSVPIQKKASSQIQLLDINFP 353
               S A    +EEET   +P    V G  T  +   +P++   P  K  S  ++    N  
Sbjct:   298 SSSIAAEEEKEEETSKTNPQ---VCGTTTHAQGIPTPEIYESP--KLTSGPLR----NET 348

Query:   354 PRVAKPMVSLKPLKRLSLNSDDNCDNEPHPDSPPREEDEIKDRGLISPNAEAENADIAST 413
              +V    ++  P    ++          HP+    + + I +   I   +E  +A IAST
Sbjct:   349 AQVHLLDINFPPRIPKAITF--------HPELNSLQSNHIVEEAEIV--SEGSDAQIAST 398

Query:   414 XXXXXXXXXXXXXXXXXXXLGMYN--GYSSEGETTMYSAETAESRNY-TIPREGKF--QQ 468
                                  +YN  GYSSE E TMYSAETAESRNY T PR+ +F  ++
Sbjct:   399 GSVNGALSEVISSSPPAAAHYVYNNHGYSSE-EETMYSAETAESRNYPTPPRKSEFHHER 457

Query:   469 VGRSQSCVGYNRWGDVQRNSMPRQTLTEKQSSLIHGKKMYSQGATSQRSNDHYFSPTVSS 528
             VGRSQSCV  +RWG  Q++   R+ + EKQ S +HGKKM+SQGA SQRSND Y+SPTVSS
Sbjct:   458 VGRSQSCVSSSRWGTPQKSLNGRREMLEKQRSFVHGKKMHSQGAMSQRSND-YYSPTVSS 516

Query:   529 IMKKRNNSEQPRPSKP--RPSAVHSSPRWMF 557
             IMKKR NS + +  KP  RP AV SSPRW F
Sbjct:   517 IMKKRINSSEQQIIKPVPRPRAVSSSPRWAF 547


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.130   0.383    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      557       515   0.00088  119 3  11 23  0.44    34
                                                     35  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  621 (66 KB)
  Total size of DFA:  303 KB (2156 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  47.80u 0.11s 47.91t   Elapsed:  00:00:03
  Total cpu time:  47.81u 0.11s 47.92t   Elapsed:  00:00:03
  Start:  Tue May 21 12:26:46 2013   End:  Tue May 21 12:26:49 2013
GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
pfam13365138 pfam13365, Trypsin_2, Trypsin-like peptidase domai 0.001
>gnl|CDD|222077 pfam13365, Trypsin_2, Trypsin-like peptidase domain Back     alignment and domain information 
 Score = 38.7 bits (90), Expect = 0.001
 Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 20/146 (13%)

Query: 44  GTGFLIHRN-LLLTT-HVNLPSVAAAETAEIRL----QNGVAAALVPHRFFITSSVLDLT 97
           GTGF++  + L+LT  HV    V  A+ +EI +       V A +V          LDL 
Sbjct: 1   GTGFVVGSDGLILTNAHV----VEDADASEIEVVLPDGGRVPAEVV-----AADPDLDLA 51

Query: 98  IVGLDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATDNL 157
           ++ +D     + AP              +  G     LG       + G    ++   + 
Sbjct: 52  LLKVDGPLLPA-APLLASSAAPLGGSVVVVGGPGGIGLGASGGGGGVGGLVSGSLGGVDG 110

Query: 158 IKLSTDGIIWSPGSAG---FDVQGNL 180
             + TD     PGS+G   FD  G +
Sbjct: 111 RYILTDADTS-PGSSGGPVFDADGEV 135

This family includes trypsin like peptidase domains. Length = 138

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
TIGR02038351 protease_degS periplasmic serine pepetdase DegS. T 99.11
TIGR02037428 degP_htrA_DO periplasmic serine protease, Do/DeqQ 99.1
PF13365120 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8 99.01
PRK10898353 serine endoprotease; Provisional 98.95
COG3591251 V8-like Glu-specific endopeptidase [Amino acid tra 98.95
PRK10942473 serine endoprotease; Provisional 98.74
PRK10139455 serine endoprotease; Provisional 98.74
COG0265347 DegQ Trypsin-like serine proteases, typically peri 97.98
PF00089220 Trypsin: Trypsin; InterPro: IPR001254 In the MEROP 97.82
cd00190232 Tryp_SPc Trypsin-like serine protease; Many of the 96.36
smart00020229 Tryp_SPc Trypsin-like serine protease. Many of the 95.96
PF05416535 Peptidase_C37: Southampton virus-type processing p 90.83
>TIGR02038 protease_degS periplasmic serine pepetdase DegS Back     alignment and domain information 
Probab=99.11  E-value=5.9e-10  Score=111.07  Aligned_cols=180  Identities=14%  Similarity=0.221  Sum_probs=121.3

Q ss_pred             hhcccCceeEEEEecc----------CCccceeEEEecc-eeeccCcCcCcHHHHhhhhhhcccccccccCCceeeeccc
Q 008706           24 IFSGKGLAMARISVAA----------SAVSGTGFLIHRN-LLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSS   92 (557)
Q Consensus        24 ifs~k~~AvArI~~~~----------~gG~GTGFLIspn-LLLTNnhvLpSaaaA~~Aev~lq~g~~a~L~P~RFFITs~   92 (557)
                      ++..-.+||-+|....          ..+.||||+|+++ ++|||+||+..+   ...+|.|.+|..   .+-+.--.|+
T Consensus        50 ~~~~~~psVV~I~~~~~~~~~~~~~~~~~~GSG~vi~~~G~IlTn~HVV~~~---~~i~V~~~dg~~---~~a~vv~~d~  123 (351)
T TIGR02038        50 AVRRAAPAVVNIYNRSISQNSLNQLSIQGLGSGVIMSKEGYILTNYHVIKKA---DQIVVALQDGRK---FEAELVGSDP  123 (351)
T ss_pred             HHHhcCCcEEEEEeEeccccccccccccceEEEEEEeCCeEEEecccEeCCC---CEEEEEECCCCE---EEEEEEEecC
Confidence            3444557888876421          1257999999977 999999999754   346678888764   2334455789


Q ss_pred             cceeEEEeeccCCCCCCCCCCCCCcccccCCCCccccceEEEeecCCccceeeccCcEEEe---------ecCceeeecC
Q 008706           93 VLDLTIVGLDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIA---------TDNLIKLSTD  163 (557)
Q Consensus        93 ~LDfTiVAvd~v~~d~~s~Gq~ph~Lk~~~kpkl~lGE~VsIIqHP~pK~laIrEnKVv~~---------~DnfIhysTD  163 (557)
                      ..||.|+-++..+         ..++++.....+.+|+.|+.||+|.--..++-.|.|...         ..+||.....
T Consensus       124 ~~DlAvlkv~~~~---------~~~~~l~~s~~~~~G~~V~aiG~P~~~~~s~t~GiIs~~~r~~~~~~~~~~~iqtda~  194 (351)
T TIGR02038       124 LTDLAVLKIEGDN---------LPTIPVNLDRPPHVGDVVLAIGNPYNLGQTITQGIISATGRNGLSSVGRQNFIQTDAA  194 (351)
T ss_pred             CCCEEEEEecCCC---------CceEeccCcCccCCCCEEEEEeCCCCCCCcEEEEEEEeccCcccCCCCcceEEEECCc
Confidence            9999999997532         234666655579999999999999322334445544322         1345555555


Q ss_pred             CCcCCCCCcccccCCCeeEEEeccccccCCCCCCCCCCcCCCCCccccccccccCcchhHHhHHHhhhcCC
Q 008706          164 GIIWSPGSAGFDVQGNLAFMICDPMKLATSPNTKSSSTSSSSSSSWKKDSSMQFGIPIPIICDWLNQHWEG  234 (557)
Q Consensus       164 t~~wSSGSAgFn~qgnlafmVc~p~~lA~sP~~~~sstSssss~s~kk~~i~q~GI~IssI~~wl~qhw~g  234 (557)
                      -.+|.||.|.||.+|++.=|+.+-..  .   ....           ...-.+|.|||..+.+.|.+-.++
T Consensus       195 i~~GnSGGpl~n~~G~vIGI~~~~~~--~---~~~~-----------~~~g~~faIP~~~~~~vl~~l~~~  249 (351)
T TIGR02038       195 INAGNSGGALINTNGELVGINTASFQ--K---GGDE-----------GGEGINFAIPIKLAHKIMGKIIRD  249 (351)
T ss_pred             cCCCCCcceEECCCCeEEEEEeeeec--c---cCCC-----------CccceEEEecHHHHHHHHHHHhhc
Confidence            67899999999999998877654211  0   0000           123468999999998888765433

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).
>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family Back     alignment and domain information
>PF13365 Trypsin_2: Trypsin-like peptidase domain; PDB: 1Y8T_A 2Z9I_A 3QO6_A 1L1J_A 1QY6_A 2O8L_A 3OTP_E 2ZLE_I 1KY9_A 3CS0_A Back     alignment and domain information
>PRK10898 serine endoprotease; Provisional Back     alignment and domain information
>COG3591 V8-like Glu-specific endopeptidase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10942 serine endoprotease; Provisional Back     alignment and domain information
>PRK10139 serine endoprotease; Provisional Back     alignment and domain information
>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF00089 Trypsin: Trypsin; InterPro: IPR001254 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information
>cd00190 Tryp_SPc Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms Back     alignment and domain information
>smart00020 Tryp_SPc Trypsin-like serine protease Back     alignment and domain information
>PF05416 Peptidase_C37: Southampton virus-type processing peptidase; InterPro: IPR001665 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-07
2o8l_A274 V8 protease, taphylococcal serine; serine protease 2e-06
1wcz_A268 Glutamyl endopeptidase; virulence factor, hydrolas 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 93/608 (15%), Positives = 178/608 (29%), Gaps = 179/608 (29%)

Query: 11  CKGVSKTERMKAAIFSGKGLAMARISVAASAVSGTGFLIHRNLLLTTHVNLPSVAAAETA 70
           CK V    +   +I S +   +  I ++  AVSGT  L     LL+    +         
Sbjct: 35  CKDVQDMPK---SILSKE--EIDHIIMSKDAVSGTLRLF--WTLLSKQEEM--------- 78

Query: 71  EIRLQNGVAAALVPHRFFITSSV----------LDLTIVGLDSADGDS------NAPGQQ 114
              +Q  V   L  +  F+ S +            + I   D    D+      N    Q
Sbjct: 79  ---VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135

Query: 115 PHH-LKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAIATD-----NLIKLSTDGIIW- 167
           P+  L+      L     V + G       ++G GK  +A D      +       I W 
Sbjct: 136 PYLKLRQALL-ELRPAKNVLIDG-------VLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187

Query: 168 ------SPGSAGFDVQGNLAFMICDPMKLATSPNTKSSSTSSSSSSSWKKDSSMQFGIPI 221
                 SP +   ++   L + I DP    TS +  SS+      S   +   +    P 
Sbjct: 188 NLKNCNSPETV-LEMLQKLLYQI-DPN--WTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 222 P---IICD--WLNQHWEGNLDELTKPKLPIIR---LMSTGQKSEHSCASFTMRQVFKSTD 273
               ++       + W    +         +    L++T  K      S           
Sbjct: 244 ENCLLVLLNVQNAKAWNA-FN---------LSCKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 274 DGNERTPSSS-NIFSKARDQTGPGCSAGVSIRE--EETLSMDPHATHV------QGIPTP 324
                TP    ++  K               ++   E L+ +P    +       G+ T 
Sbjct: 294 HSMTLTPDEVKSLLLKY---------LDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 325 EIYE---SPKLTSVPIQKKASSQIQLLDIN-----------FPPRVAKPMVSLKPLKRLS 370
           + ++     KLT++ I+    S + +L+             FPP    P      L  + 
Sbjct: 345 DNWKHVNCDKLTTI-IE----SSLNVLEPAEYRKMFDRLSVFPPSAHIPT---ILLSLIW 396

Query: 371 LNSDDNCDNEPHPDSPPREEDEIKDRGLISPNAEAENADIASTGSVNGVQSEVQSSSSPV 430
            +   +              +++    L+    +       ST S+  +  E++      
Sbjct: 397 FDVIKSD--------VMVVVNKLHKYSLVEKQPK------ESTISIPSIYLELKVKLENE 442

Query: 431 -----EVLGMYN---GYSSEGETT--------------MYSAETAESRNYTIPREGKFQQ 468
                 ++  YN    + S+                  + + E  E       R   F+ 
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-------RMTLFRM 495

Query: 469 VGRSQSCVGY-N-RWGDVQ---RNSMPRQTLTEKQSSLIHGKKMYSQGATSQRSNDHYFS 523
           V        + + R+  ++   R+       +    + +   K Y         ND  + 
Sbjct: 496 V--------FLDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC---DNDPKYE 542

Query: 524 PTVSSIMK 531
             V++I+ 
Sbjct: 543 RLVNAILD 550
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Length = 274 Back     alignment and structure
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Length = 268 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
3lgi_A237 Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydro 99.45
3tjo_A231 Serine protease HTRA1; peptidase, hydrolase; HET: 99.39
3sti_A245 Protease DEGQ; serine protease, PDZ domain, chaper 99.38
3k6y_A237 Serine protease, possible membrane-associated seri 99.31
3num_A332 Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom 99.29
4a8c_A436 Periplasmic PH-dependent serine endoprotease DEGQ; 99.26
1te0_A318 Protease DEGS; two domains, serine protease, PDZ, 99.25
1y8t_A324 Hypothetical protein RV0983; serine protease, stru 99.25
2w5e_A163 Putative serine protease; coiled coil, transmembra 99.24
3stj_A345 Protease DEGQ; serine protease, PDZ domain, protea 99.22
3qo6_A348 Protease DO-like 1, chloroplastic; protease, HTRA, 99.22
3pv2_A451 DEGQ; trypsin fold, PDZ domain, chaperone protease 99.21
1lcy_A325 HTRA2 serine protease; apoptosis, PDZ domain, casp 99.15
1l1j_A239 Heat shock protease HTRA; hydrolase, serine protei 99.11
2w7s_A200 Serine protease SPLA; hydrolase, family S1; 1.80A 99.08
2as9_A210 Serine protease; trypsin-like fold, hydrolase; 1.7 99.08
2o8l_A274 V8 protease, taphylococcal serine; serine protease 99.08
1agj_A242 Epidermolytic toxin A; hydrolase, serine protease; 99.06
2vid_A204 Serine protease SPLB; hydrolase; 1.80A {Staphyloco 99.05
1ky9_A448 Protease DO, DEGP, HTRA; protein quality control, 99.05
4fln_A539 Protease DO-like 2, chloroplastic; protease, DEG, 98.96
1wcz_A268 Glutamyl endopeptidase; virulence factor, hydrolas 98.95
1qtf_A246 Exfoliative toxin B; serine protease, superantigen 98.89
1arb_A268 Achromobacter protease I; hydrolase(serine proteas 97.79
1zyo_A191 Serine protease; beta-barrel, glutamyl endopeptida 97.66
2h5c_A198 Alpha-lytic protease; serine protease, acylation t 97.17
1hpg_A187 Glutamic acid specific protease; serine protease, 96.54
3fan_A213 Non-structural protein; chymotrypsin-like, N-termi 96.31
2oua_A188 Serine protease, protein NAPA; kinetic stability, 95.92
2qa9_E185 Streptogrisin-B; chymotrypsin-type serine peptidas 95.48
1mbm_A198 NSP4 proteinase, chymotrypsin-like serine protease 95.25
3s9c_A234 Vipera russelli proteinase RVV-V gamma; serine pro 94.81
2sga_A181 Proteinase A; hydrolase (serine proteinase); 1.50A 94.38
1p3c_A215 Glutamyl-endopeptidase; serine protease, hydrolase 94.29
4e7n_A238 Snake-venom thrombin-like enzyme; beta-barrel, hyd 94.19
2ea3_A189 Chymotrypsin; celloulomonas, protease, hydrolase; 93.61
3h7t_A235 Group 3 allergen smipp-S YVT004A06; hydrolase; 2.0 93.58
1si5_H240 Scatter factor, hepatocyte growth factor, SF, hepa 93.08
2pfe_A186 Protease A, alkaline serine protease, TFPA; beta-b 92.28
2asu_B234 Hepatocyte growth factor-like protein; serine prot 92.0
3mhw_U247 Urokinase-type plasminogen activator; hydrolase, b 91.99
4i8h_A223 Cationic trypsin, beta-trypsin; serine protease, h 91.84
1ddj_A247 Plasminogen; catalytic domain, blood clotting; 2.0 91.79
3s69_A234 Thrombin-like enzyme defibrase; beta-barrel, serin 90.83
3gov_B251 MAsp-1; complement, serine protease, beta barrel, 90.64
2aiq_A231 Protein C activator; snake venom serine proteinase 90.14
1fuj_A221 PR3, myeloblastin; hydrolase, serine protease, gly 89.98
2oq5_A232 Transmembrane protease, serine 11E; type II trans- 89.98
1pq7_A224 Trypsin; ultra-high resolution, catalysis, hydrola 89.8
2jde_A276 Urokinase-type plasminogen activator; plasminogen 89.28
3ncl_A241 Suppressor of tumorigenicity 14 protein; proteinas 89.02
3gyl_B261 Prostasin; ENAC, zymogen, divalent cation, channel 88.92
4ag1_A226 Chymase; hydrolase-de novo protein complex, inhibi 88.84
3h7o_A228 Group 3 allergen smipp-S YV6023A04; hydrolase; 1.8 88.83
1ao5_A237 Glandular kallikrein-13; serine protease, protein 88.79
3rp2_A224 RAT MAST cell protease II; serine proteinase; 1.90 88.66
4ash_A185 NS6 protease; hydrolase, trypsin-like, calicivirus 88.53
2fyq_A194 Chymotrypsin-like cysteine proteinase; protease, n 87.98
2r0l_A248 Hepatocyte growth factor activator; serine proteas 87.81
2z7f_E218 Leukocyte elastase; serine protease, serine protea 87.49
3mfj_A223 Cationic trypsin; serine proteinase, hydrolase; 0. 87.09
3beu_A224 Trypsin, SGT; beta sheets, serine protease, hydrol 86.94
1ton_A235 Tonin; hydrolase(serine proteinase); 1.80A {Rattus 86.4
1spj_A238 Kallikrein 1; serine protease, KLK1, HK1, hydrolas 86.28
1ym0_A238 Fibrinotic enzyme component B; two chains, glycosy 86.23
1lo6_A223 Kallikrein 6, HK6; serine protease, human kallikre 86.02
3bg8_A238 Coagulation factor XIA light chain; protease inhib 86.02
1a7s_A225 Heparin binding protein; serine protease homolog, 85.44
2psx_A227 Kallikrein-5; zinc inhibition, stratum corneum, gl 85.31
3h5c_B317 Vitamin K-dependent protein Z; protein Z-protein Z 85.02
1elt_A236 Elastase; serine proteinase; 1.61A {Salmo salar} S 84.88
4dur_A791 Plasminogen, serine protease; fibrinolysis, hydrol 84.26
2any_A241 Kininogenin, plasma kallikrein, light chain, fletc 84.22
4f4o_C347 Haptoglobin; globin fold, serine protease fold, co 83.64
1hj8_A222 Trypsin I; hydrolase, radiation damage, disulphide 83.3
3cp7_A218 Alkaline serine protease Al20; trypsin-like, hydro 83.13
1t8o_A245 Chymotrypsin A; chymotrypsin, serine proteinase, B 82.55
2qxi_A224 Kallikrein-7; S1 pocket, chloromethyl ketone, alte 82.43
2vnt_A276 Urokinase-type plasminogen activator; UPA, inhibit 82.33
3tvj_B242 Mannan-binding lectin serine protease 2 B chain; i 81.91
1yc0_A283 Hepatocyte growth factor activator; hydrolase/inhi 81.68
1azz_A226 Collagenase; complex (serine protease/inhibitor), 81.65
2jkh_A241 Activated factor XA heavy chain; plasma, calcium, 80.6
1bru_P241 Elastase, PPE; serine protease, hydrolase; HET: 1N 80.33
>3lgi_A Protease DEGS; stress-sensor, HTRA, PDZ OMP, hydrolase, serine PR; 1.65A {Escherichia coli} PDB: 2qf3_A 2qf0_A 2rce_A* 3lh3_A* 3b8j_A 2qgr_A 3lh1_A 3lgy_A 3lgu_A 3lgv_A 3lgw_A 3lgt_A 2r3u_A Back     alignment and structure
Probab=99.45  E-value=3.6e-13  Score=122.99  Aligned_cols=178  Identities=12%  Similarity=0.218  Sum_probs=119.9

Q ss_pred             cccCceeEEEEeccCC----------ccceeEEEecc-eeeccCcCcCcHHHHhhhhhhcccccccccCCceeeeccccc
Q 008706           26 SGKGLAMARISVAASA----------VSGTGFLIHRN-LLLTTHVNLPSVAAAETAEIRLQNGVAAALVPHRFFITSSVL   94 (557)
Q Consensus        26 s~k~~AvArI~~~~~g----------G~GTGFLIspn-LLLTNnhvLpSaaaA~~Aev~lq~g~~a~L~P~RFFITs~~L   94 (557)
                      ..-.+||.+|......          +.||||+|+++ ++|||+||+..+   ....|.+.+|..   .+-+....++..
T Consensus        27 ~~~~~sVV~I~~~~~~~~~~~~~~~~~~GsG~ii~~~G~IlTaaHvv~~~---~~~~V~~~~g~~---~~a~vv~~d~~~  100 (237)
T 3lgi_A           27 RRAAPAVVNVYNRGLNTNSHNQLEIRTLGSGVIMDQRGYIITNKHVINDA---DQIIVALQDGRV---FEALLVGSDSLT  100 (237)
T ss_dssp             HHHGGGEEEEEEECCTTTCTTSCCEEEEEEEEEEETTTEEEEEHHHHTTC---SEEEEECTTSCE---EEEEEEEEETTT
T ss_pred             HHhCCcEEEEEEEecccCcccccccceEEEEEEEeCCCEEEEeeeecCCC---CEEEEEeCCCCE---EEEEEEEEcCCC
Confidence            3345788888744221          47999999998 999999999753   345666766653   233445577889


Q ss_pred             eeEEEeeccCCCCCCCCCCCCCcccccCCCCccccceEEEeecCCccceeeccCcEEE---------eecCceeeecCCC
Q 008706           95 DLTIVGLDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYMEEKELMVGEGKVAI---------ATDNLIKLSTDGI  165 (557)
Q Consensus        95 DfTiVAvd~v~~d~~s~Gq~ph~Lk~~~kpkl~lGE~VsIIqHP~pK~laIrEnKVv~---------~~DnfIhysTDt~  165 (557)
                      |+.|+-|+...        ....+++.....+..|+.|+++|+|.-...++..|.|..         ...++|.+.+...
T Consensus       101 DlAll~l~~~~--------~~~~~~l~~~~~~~~G~~v~~~G~p~~~~~~~~~g~vs~~~~~~~~~~~~~~~i~~d~~i~  172 (237)
T 3lgi_A          101 DLAVLKINATG--------GLPTIPINARRVPHIGDVVLAIGNPYNLGQTITQGIISATGRIGLNPTGRQNFLQTDASIN  172 (237)
T ss_dssp             TEEEEECCCSS--------CCCCCCCCTTCCCCTTBEEEEEECGGGSCSEEEEEEEEEECCSSCCTTSCSCCEEECSCCC
T ss_pred             CEEEEEecCCC--------CCceEeccCcccCCCCCEEEEEECCCCCCCcEEEEEEEecccccccCCCcCCEEEEcCccC
Confidence            99999997532        112355554446889999999999943334455555542         2346777788888


Q ss_pred             cCCCCCcccccCCCeeEEEeccccccCCCCCCCCCCcCCCCCccccccccccCcchhHHhHHHhhhc
Q 008706          166 IWSPGSAGFDVQGNLAFMICDPMKLATSPNTKSSSTSSSSSSSWKKDSSMQFGIPIPIICDWLNQHW  232 (557)
Q Consensus       166 ~wSSGSAgFn~qgnlafmVc~p~~lA~sP~~~~sstSssss~s~kk~~i~q~GI~IssI~~wl~qhw  232 (557)
                      +|.||+|.||.+|.+.=|+..--.     .....          ....-..|.|||..|.++|.|-.
T Consensus       173 ~G~SGGPlv~~~G~vvGI~s~~~~-----~~~~~----------~~~~g~~~aip~~~i~~~~~~l~  224 (237)
T 3lgi_A          173 HGNSGGALVNSLGELMGINTLSFD-----KSNDG----------ETPEGIGFAIPFQLATKIMDKLI  224 (237)
T ss_dssp             TTCTTCEEECTTCCEEEEECCCCC-----CCTTS----------CCCCSCEEEEEHHHHHHHHHHHH
T ss_pred             CCCchHHeeCCCCeEEEEEeeeec-----cCCCC----------cCcCceEEEEEHHHHHHHHHHHH
Confidence            999999999999997766643211     11000          01223578999999999988753
>3tjo_A Serine protease HTRA1; peptidase, hydrolase; HET: BOG; 2.30A {Homo sapiens} PDB: 3tjn_A 3nwu_A Back     alignment and structure
>3sti_A Protease DEGQ; serine protease, PDZ domain, chaperone, hydrolase; 2.60A {Escherichia coli} Back     alignment and structure
>3k6y_A Serine protease, possible membrane-associated serine protease; oxidative stress, disulfide, BENT helix, HY protease; 1.30A {Mycobacterium tuberculosis} PDB: 3k6z_A 3lt3_A Back     alignment and structure
>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A Back     alignment and structure
>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A Back     alignment and structure
>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A Back     alignment and structure
>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Back     alignment and structure
>2w5e_A Putative serine protease; coiled coil, transmembrane, thiol protease, RNA replication, ribosomal frameshifting, catalytic triad, membrane; 2.00A {Human astrovirus 1} Back     alignment and structure
>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli} Back     alignment and structure
>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana} Back     alignment and structure
>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A Back     alignment and structure
>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Back     alignment and structure
>1l1j_A Heat shock protease HTRA; hydrolase, serine proteinase; 2.80A {Thermotoga maritima} SCOP: b.47.1.1 Back     alignment and structure
>2w7s_A Serine protease SPLA; hydrolase, family S1; 1.80A {Staphylococcus aureus} PDB: 2w7u_A Back     alignment and structure
>2as9_A Serine protease; trypsin-like fold, hydrolase; 1.70A {Staphylococcus aureus} Back     alignment and structure
>2o8l_A V8 protease, taphylococcal serine; serine protease, enzyme, hydrolase; 1.50A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1qy6_A Back     alignment and structure
>1agj_A Epidermolytic toxin A; hydrolase, serine protease; 1.70A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dua_A 1exf_A 1due_A Back     alignment and structure
>2vid_A Serine protease SPLB; hydrolase; 1.80A {Staphylococcus aureus} Back     alignment and structure
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A Back     alignment and structure
>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana} Back     alignment and structure
>1wcz_A Glutamyl endopeptidase; virulence factor, hydrolase; 2.00A {Staphylococcus aureus} SCOP: b.47.1.1 Back     alignment and structure
>1qtf_A Exfoliative toxin B; serine protease, superantigen, hydrolase; 2.40A {Staphylococcus aureus} SCOP: b.47.1.1 PDB: 1dt2_A Back     alignment and structure
>1arb_A Achromobacter protease I; hydrolase(serine protease); 1.20A {Achromobacter lyticus} SCOP: b.47.1.1 PDB: 1arc_A* Back     alignment and structure
>1zyo_A Serine protease; beta-barrel, glutamyl endopeptidase, hydrolase; 2.40A {Sesbania mosaic virus} Back     alignment and structure
>2h5c_A Alpha-lytic protease; serine protease, acylation transition STAT catalysis, protein folding, protein stability, packing DIST hydrolase; HET: SO4; 0.82A {Lysobacter enzymogenes} SCOP: b.47.1.1 PDB: 1p02_A 1p03_A 1p04_A 1p05_A 1p06_A* 1p01_A 1p11_E 1p12_E 1qrx_A* 1tal_A 2alp_A 1ssx_A* 2h5d_A* 2ull_A 3qgj_A* 9lpr_A 1boq_A 1gbj_A 1gbk_A 1gbl_A ... Back     alignment and structure
>1hpg_A Glutamic acid specific protease; serine protease, hydrolase-hydrolase inhibitor complex; 1.50A {Streptomyces griseus} SCOP: b.47.1.1 Back     alignment and structure
>3fan_A Non-structural protein; chymotrypsin-like, N-terminal beta-barrels, C-terminal alpha-beta extra domain; 1.90A {Porcine respiratory and reproductivesyndrome virus} PDB: 3fao_A Back     alignment and structure
>2oua_A Serine protease, protein NAPA; kinetic stability, acid stability, electros hydrolase; HET: 2AB; 1.85A {Nocardiopsis alba} Back     alignment and structure
>2qa9_E Streptogrisin-B; chymotrypsin-type serine peptidase, second tetrahedral inter tetrapeptide, beta barrels, alpha helix, hydrolase; HET: GOL; 1.18A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sge_E 1sgn_E 1sgy_E 1sgd_E 2nu0_E 2nu1_E 2gkv_E 2nu3_E 2nu4_E 2nu2_E* 2qaa_A* 2sgd_E 2sge_E 2sgf_E 2sgp_E 2sgq_E 3sgq_E 1sgp_E 1cso_E 1ct0_E ... Back     alignment and structure
>1mbm_A NSP4 proteinase, chymotrypsin-like serine protease; serine proteinase, chymotrypsin-like proteinase, collapsed O HOLE, transferase; 2.00A {Equine arteritis virus} SCOP: b.47.1.3 Back     alignment and structure
>3s9c_A Vipera russelli proteinase RVV-V gamma; serine proteinase, double six-stranded beta-barrels, hydrola glycosylation; HET: NAG BMA BGC GLC; 1.80A {Daboia russellii siamensis} PDB: 3s9b_A* 3s9a_A* 3sbk_A* Back     alignment and structure
>2sga_A Proteinase A; hydrolase (serine proteinase); 1.50A {Streptomyces griseus} SCOP: b.47.1.1 PDB: 1sgc_A 3sga_E* 4sga_E 5sga_E 2sfa_A Back     alignment and structure
>1p3c_A Glutamyl-endopeptidase; serine protease, hydrolase; 1.50A {Bacillus intermedius} SCOP: b.47.1.1 PDB: 1p3e_A Back     alignment and structure
>4e7n_A Snake-venom thrombin-like enzyme; beta-barrel, hydrolase, arginine esterase, glycosylation, extracellular; HET: NAG; 1.75A {Agkistrodon halys} Back     alignment and structure
>2ea3_A Chymotrypsin; celloulomonas, protease, hydrolase; 1.78A {Cellulomonas bogoriensis} Back     alignment and structure
>3h7t_A Group 3 allergen smipp-S YVT004A06; hydrolase; 2.00A {Sarcoptes scabiei type hominis} Back     alignment and structure
>1si5_H Scatter factor, hepatocyte growth factor, SF, hepatopoeitin A, LUNG; chymotrypsin homology, hormone/growth factor complex; 2.53A {Homo sapiens} SCOP: b.47.1.2 PDB: 1shy_A Back     alignment and structure
>2pfe_A Protease A, alkaline serine protease, TFPA; beta-barrels, thermophIle, kinetic stabilit thermostability, protein folding; HET: 2AB; 1.44A {Thermobifida fusca} Back     alignment and structure
>2asu_B Hepatocyte growth factor-like protein; serine proteinase, beta-chain, MSP, HGFL, hydrolase; 1.85A {Homo sapiens} Back     alignment and structure
>3mhw_U Urokinase-type plasminogen activator; hydrolase, blood coagulation, fibrinolysis, plasminogen activation; HET: ABV; 1.45A {Homo sapiens} SCOP: b.47.1.2 PDB: 1w10_U* 1w11_U* 1w12_U* 1w13_U* 1w14_U* 1w0z_U* 2vip_A* 1f5k_U 1f5l_A* 1f92_A* 2r2w_U* 2vin_A* 2vio_A* 1ejn_A* 2viq_A* 2viv_A* 2viw_A* 1vja_U* 1vj9_U* 1sc8_U* ... Back     alignment and structure
>4i8h_A Cationic trypsin, beta-trypsin; serine protease, hydrolase; HET: BEN; 0.75A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Back     alignment and structure
>1ddj_A Plasminogen; catalytic domain, blood clotting; 2.00A {Homo sapiens} SCOP: b.47.1.2 PDB: 1bml_A 1l4d_A 1l4z_A 1bui_A* 1rjx_B 1qrz_A Back     alignment and structure
>3s69_A Thrombin-like enzyme defibrase; beta-barrel, serine enzymes, fibrinogen binding, glycosylati hydrolase; 1.43A {Gloydius saxatilis} PDB: 1op2_A* 1op0_A* 4gso_A 1bqy_A* Back     alignment and structure
>3gov_B MAsp-1; complement, serine protease, beta barrel, hydrolase, hydroxy immune response, innate immunity, sushi, coagulation, compl pathway; 2.55A {Homo sapiens} SCOP: b.47.1.0 PDB: 4djz_B Back     alignment and structure
>2aiq_A Protein C activator; snake venom serine proteinase, hydrolas; HET: NAG NDG; 1.54A {Agkistrodon contortrix contortrix} PDB: 2aip_A* Back     alignment and structure
>1fuj_A PR3, myeloblastin; hydrolase, serine protease, glycoprotein, zymogen, hydrolase protease); HET: NAG FUC; 2.20A {Homo sapiens} SCOP: b.47.1.2 Back     alignment and structure
>2oq5_A Transmembrane protease, serine 11E; type II trans-membrane serine proteinases, trypsin-like serine protease, tumor marker, hydrolase; 1.61A {Homo sapiens} Back     alignment and structure
>1pq7_A Trypsin; ultra-high resolution, catalysis, hydrolase; HET: ARG; 0.80A {Fusarium oxysporum} SCOP: b.47.1.2 PDB: 1fy4_A 1fy5_A 1gdn_A 1gdq_A 1gdu_A 1ppz_A* 1pq5_A* 1fn8_A* 1pq8_A* 1try_A 1xvm_A 1xvo_A* 2g51_A 2g52_A 2vu8_E 1pqa_A* Back     alignment and structure
>3ncl_A Suppressor of tumorigenicity 14 protein; proteinase-inhibitor complex, serine proteinase, benzamidine phosphonate, serine endopeptidases; HET: CCZ; 1.19A {Homo sapiens} SCOP: b.47.1.2 PDB: 3bn9_B* 3nps_A 3so3_A* 1eax_A 1eaw_A 2gv6_A* 2gv7_A* 3p8g_A* 3p8f_A* Back     alignment and structure
>3gyl_B Prostasin; ENAC, zymogen, divalent cation, channel activatin membrane, disulfide bond, glycoprotein, hydrolase, membrane protease, secreted; 1.30A {Homo sapiens} PDB: 3gym_A 3e16_B* 3e0p_B* 3e0n_B* 3e1x_B 3fvf_B* 3dfj_A 3dfl_A* Back     alignment and structure
>4ag1_A Chymase; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Homo sapiens} PDB: 4afs_A 4afu_A 4afz_A* 4afq_A 4ag2_A* 1nn6_A* 1klt_A* 3n7o_A* 1t31_A* 1pjp_A* 2hvx_A* 3s0n_A* 2rdl_A Back     alignment and structure
>3h7o_A Group 3 allergen smipp-S YV6023A04; hydrolase; 1.85A {Sarcoptes scabiei type hominis} SCOP: b.47.1.0 Back     alignment and structure
>1ao5_A Glandular kallikrein-13; serine protease, protein maturation; HET: NAG; 2.60A {Mus musculus} SCOP: b.47.1.2 PDB: 1sgf_G* Back     alignment and structure
>3rp2_A RAT MAST cell protease II; serine proteinase; 1.90A {Rattus rattus} SCOP: b.47.1.2 Back     alignment and structure
>4ash_A NS6 protease; hydrolase, trypsin-like, calicivirus; 1.58A {Murine norovirus 1} Back     alignment and structure
>2fyq_A Chymotrypsin-like cysteine proteinase; protease, norovirus, calicivirus, viral protein; 1.50A {Norwalk virus} PDB: 2fyr_A 2iph_A* 1wqs_A* Back     alignment and structure
>2r0l_A Hepatocyte growth factor activator; serine protease, antibody, allosteric inhibitor, EGF-like DO glycoprotein, hydrolase, kringle, secreted; HET: NAG BMA; 2.20A {Homo sapiens} PDB: 3k2u_A* 2wub_A* 2wuc_A* Back     alignment and structure
>2z7f_E Leukocyte elastase; serine protease, serine protease inhibitor, disease mutation glycoprotein, hydrolase, zymogen, secreted; HET: NAG FUC; 1.70A {Homo sapiens} SCOP: b.47.1.2 PDB: 1h1b_A* 1ppg_E* 1ppf_E* 3q76_A* 3q77_A* 1hne_E 2rg3_A* 1b0f_A* Back     alignment and structure
>3mfj_A Cationic trypsin; serine proteinase, hydrolase; 0.80A {Bos taurus} PDB: 1aq7_A* 1auj_A* 1bju_A* 1bjv_A* 1az8_A* 1c1o_A 1c1n_A* 1c1q_A* 1c1r_A* 1c1s_A* 1c1t_A* 1c2d_A* 1c2e_A* 1c2f_A* 1c2g_A* 1c2h_A* 1c2i_A* 1c2j_A* 1c2k_A* 1c2l_A ... Back     alignment and structure
>3beu_A Trypsin, SGT; beta sheets, serine protease, hydrolase, zymogen; HET: BEN; 1.05A {Streptomyces griseus} PDB: 3i78_A 3i77_A 2fmj_A 1os8_A 1oss_A 1sgt_A Back     alignment and structure
>1ton_A Tonin; hydrolase(serine proteinase); 1.80A {Rattus rattus} SCOP: b.47.1.2 Back     alignment and structure
>1spj_A Kallikrein 1; serine protease, KLK1, HK1, hydrolase; HET: NAG; 1.70A {Homo sapiens} Back     alignment and structure
>1ym0_A Fibrinotic enzyme component B; two chains, glycosylation, pyroglutamation, eight-membered R peptide bond, hydrolase; HET: NAG MAN FUC; 2.06A {Eisenia fetida} Back     alignment and structure
>1lo6_A Kallikrein 6, HK6; serine protease, human kallikrein 6, benzamidine, protease, brain serine protease, myelencephalon specific protease, MSP, ZYME; 1.56A {Homo sapiens} SCOP: b.47.1.2 PDB: 1l2e_A 1gvl_A 4d8n_A* Back     alignment and structure
>3bg8_A Coagulation factor XIA light chain; protease inhibitor, factor XIA inhibitor complex, covalent inhibitor, alternative splicing, blood coagulation; HET: INH; 1.60A {Homo sapiens} PDB: 3sor_A* 3sos_A* 1zsl_A* 1zpz_A* 1zrk_A* 1xx9_A* 1zjd_A 1zhr_A 1zmj_A* 1zml_A* 1zmn_A* 1zom_A* 1zpb_A* 1zpc_A* 1zsj_A* 1zsk_A* 1ztj_A* 1ztk_A* 1ztl_A* 2fda_A* ... Back     alignment and structure
>1a7s_A Heparin binding protein; serine protease homolog, endotoxin binding; HET: NAG; 1.12A {Homo sapiens} SCOP: b.47.1.2 PDB: 1ae5_A* 1fy3_A* 1fy1_A* Back     alignment and structure
>2psx_A Kallikrein-5; zinc inhibition, stratum corneum, glcosylation, hydrolase, H hydrolase inhibitor complex; HET: AR7 NAG; 2.30A {Homo sapiens} PDB: 2psy_A* Back     alignment and structure
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Back     alignment and structure
>1elt_A Elastase; serine proteinase; 1.61A {Salmo salar} SCOP: b.47.1.2 Back     alignment and structure
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A Back     alignment and structure
>2any_A Kininogenin, plasma kallikrein, light chain, fletcher factor; mutagenically deglycosyalted human plasma kallikrein protease domain; HET: BAM; 1.40A {Homo sapiens} PDB: 2anw_A* Back     alignment and structure
>4f4o_C Haptoglobin; globin fold, serine protease fold, complement control protei haemoglobin scavenging, oxygen storage-transport complex; HET: HEM NAG FUC; 2.90A {Sus scrofa} Back     alignment and structure
>1hj8_A Trypsin I; hydrolase, radiation damage, disulphide bond breakage, salmon, atomic resolution; HET: BAM; 1.00A {Salmo salar} SCOP: b.47.1.2 PDB: 1utm_A 1utj_A 1utl_M* 1utk_A 1bit_A 2sta_E 1bzx_E 2stb_E 2zpq_A 2zps_A 2tbs_A 2zpr_A 1mbq_A 2eek_A Back     alignment and structure
>3cp7_A Alkaline serine protease Al20; trypsin-like, hydrolase; 1.39A {Nesterenkonia abyssinica} Back     alignment and structure
>1t8o_A Chymotrypsin A; chymotrypsin, serine proteinase, BPTI, protein-protein interaction, non-cognate binding, S1 pocket, primary specificity; 1.70A {Bos taurus} SCOP: b.47.1.2 PDB: 1cgi_E 1cgj_E 1chg_A 1ex3_A 1acb_E 1gl0_E 1gl1_A 1gcd_A* 1oxg_A 1k2i_1 1p2n_A 1p2o_A 1p2q_A 1t7c_A 1t8l_A 1t8m_A 1t8n_A 1p2m_A 2cga_A 2y6t_A ... Back     alignment and structure
>2qxi_A Kallikrein-7; S1 pocket, chloromethyl ketone, alternate conformations, alternative splicing, glycoprotein, hydrolase, protease, secreted; HET: K7J; 1.00A {Homo sapiens} PDB: 2qxg_A* 2qxh_A* 2qxj_A* 3bsq_A Back     alignment and structure
>2vnt_A Urokinase-type plasminogen activator; UPA, inhibitor complex, hydrolase; HET: QGG; 2.2A {Homo sapiens} Back     alignment and structure
>3tvj_B Mannan-binding lectin serine protease 2 B chain; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Homo sapiens} PDB: 4fxg_H* Back     alignment and structure
>1yc0_A Hepatocyte growth factor activator; hydrolase/inhibitor, hydrolase-inhibitor complex; 2.60A {Homo sapiens} PDB: 1ybw_A 2r0k_A Back     alignment and structure
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease, inhibitor, complex, protease-substrate interactions, collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2 Back     alignment and structure
>2jkh_A Activated factor XA heavy chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_A* 2vvc_A* 2vvu_A* 2vvv_A* 2vwl_A* 2vwm_A* 2vwn_A* 2vwo_A* 2xbv_A* 1c5m_D 2vh0_A* 1ezq_A* 1f0s_A* 1ksn_A* 1f0r_A* 1lpk_B* 1lpz_B* 1lqd_B* 1nfu_A* 1nfw_A* ... Back     alignment and structure
>1bru_P Elastase, PPE; serine protease, hydrolase; HET: 1NB; 2.30A {Sus scrofa} SCOP: b.47.1.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d2o8la1216 V8 protease {Staphylococcus aureus [TaxId: 1280]} 99.72
d1agja_242 Epidermolytic (exfoliative) toxin A {Staphylococcu 99.67
d2z9ia2221 Protease PepD {Mycobacterium tuberculosis [TaxId: 99.55
d1qtfa_246 Exfoliative toxin B {Staphylococcus aureus [TaxId: 99.55
d1lcya2205 Mitochondrial serine protease HtrA2, catalytic dom 99.55
d2qf3a1210 Stress sensor protease DegS, catalytic domain {Esc 99.32
d1l1ja_228 Protease Do (DegP, HtrA), catalytic domain {Thermo 99.27
d1p3ca_215 Glutamyl endopeptidase {Bacillus intermedius [TaxI 99.23
d1ky9a2249 Protease Do (DegP, HtrA), catalytic domain {Escher 99.22
d1lvmb_219 TEV protease (nucleat inclusion protein A, NIA) {T 99.06
d2bhga1199 3C cysteine protease (picornain 3C) {Foot-and-mout 98.45
d2qaaa1185 Protease B {Streptomyces griseus, strain k1 [TaxId 97.36
d1arba_263 Achromobacter protease {Achromobacter lyticus, str 97.32
d2sgaa_181 Protease A {Streptomyces griseus, strain k1 [TaxId 97.13
d1cqqa_180 3C cysteine protease (picornain 3C) {Human rhinovi 97.01
d2h5ca1198 alpha-Lytic protease {Lysobacter enzymogenes, 495 96.11
d1xx9a_237 Coagulation factor XI {Human (Homo sapiens) [TaxId 95.98
d1rjxb_247 Plasmin(ogen), catalytic domain {Human (Homo sapie 95.82
d1z8ga1255 Hepsin, catalytic domain {Human (Homo sapiens) [Ta 94.29
d1gdna_224 Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5 93.59
d1op0a_234 Venom serine protease {Hundred-pace snake (Agkistr 93.41
d1a7sa_225 Heparin binding protein, HBP {Human (Homo sapiens) 93.36
d1eq9a_222 (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (So 93.27
d2f91a1237 Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus 92.75
d1fq3a_227 Granzyme B {Human (Homo sapiens) [TaxId: 9606]} 92.45
d1fona_232 Procarboxypeptidase A-S6 subunit III (zymogen E) { 92.05
d1hpga_187 Glutamic acid-specific protease {Streptomyces gris 92.01
d2fpza1243 beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} 91.99
d1eaxa_241 Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 960 91.57
g1gg6.1238 (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) 91.5
d1gvkb_240 Elastase {Pig (Sus scrofa) [TaxId: 9823]} 91.05
g1gj7.1256 Urokinase-type plasminogen activator (LMW U-PA), c 90.61
d1fuja_221 Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 96 90.42
d2bz6h1254 Coagulation factor VIIa {Human (Homo sapiens) [Tax 90.4
d1nn6a_224 Chymase (mast cell protease I) {Human (Homo sapien 90.17
d1brup_241 Elastase {Pig (Sus scrofa) [TaxId: 9823]} 90.06
d1ao5a_237 Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090] 89.82
d1lo6a_221 Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} 89.48
d1rfna_235 Coagulation factor IXa, protease domain {Human (Ho 89.46
d1si5h_234 Hepatocyte growth factor, HGF {Human (Homo sapiens 89.41
d1j16a_223 Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 101 87.81
d2z7fe1218 Elastase {Human (Homo sapiens) [TaxId: 9606]} 87.68
d1pytd_251 (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) 86.17
d1t32a1224 Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} 86.12
d1autc_240 Activated protein c (autoprothrombin IIa) {Human ( 85.93
d1elva1259 Complement C1S protease, catalytic domain {Human ( 85.91
d1npma_225 Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} 85.56
d1tona_235 Tonin {Rat (Rattus rattus) [TaxId: 10117]} 85.01
g1fiw.1274 Beta-acrosin {Sheep (Ovis aries) [TaxId: 9940]} 84.9
d1m9ua_241 Elastase {Worm (Eisenia fetida) [TaxId: 6396]} 83.69
d1ekbb_235 Enteropeptidase (enterokinase light chain) {Cow (B 80.92
d1q3xa1242 Mannan-binding lectin serine protease 2 (MASP-2), 80.77
>d2o8la1 b.47.1.1 (A:1-216) V8 protease {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: All beta proteins
fold: Trypsin-like serine proteases
superfamily: Trypsin-like serine proteases
family: Prokaryotic proteases
domain: V8 protease
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.72  E-value=7.6e-18  Score=144.58  Aligned_cols=182  Identities=14%  Similarity=0.181  Sum_probs=125.3

Q ss_pred             CceeEEEEeccCC--ccceeEEEecceeeccCcCcCcHHHHhhhhhhcccccc------cccCCceeeeccccceeEEEe
Q 008706           29 GLAMARISVAASA--VSGTGFLIHRNLLLTTHVNLPSVAAAETAEIRLQNGVA------AALVPHRFFITSSVLDLTIVG  100 (557)
Q Consensus        29 ~~AvArI~~~~~g--G~GTGFLIspnLLLTNnhvLpSaaaA~~Aev~lq~g~~------a~L~P~RFFITs~~LDfTiVA  100 (557)
                      =+||++|.+..++  +.||||||+++++||++|+|.+..........+.....      ......++......-|+.|+.
T Consensus        19 ~~~v~~i~~~~~~~~~~cTG~lI~~~~vLTAaHcv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~all~   98 (216)
T d2o8la1          19 YAPVTYIQVEAPTGTFIASGVVVGKDTLLTNKHVVDATHGDPHALKAFPSAINQDNYPNGGFTAEQITKYSGEGDLAIVK   98 (216)
T ss_dssp             GTTEEEEEEEETTEEEEEEEEEEETTEEEECHHHHHTTTTCGGGEEEEETCCBTTBCTTCCEEEEEEEECSSSSCCEEEE
T ss_pred             hheEEEEEEEcCCCCEEEEEEEEeCCEEEEeeeeeccCCCceEEEEEEecccccceeeeeeEEeeeeeccccCCceEEEE
Confidence            3589999865333  57999999999999999999886544332222222221      113344455567788999999


Q ss_pred             eccCCCCCCCCCCCCCcccccCCCCccccceEEEeecC---CccceeeccCcEEEeecCceeeecCCCcCCCCCcccccC
Q 008706          101 LDSADGDSNAPGQQPHHLKTCSKPNLDLGSIVYLLGYM---EEKELMVGEGKVAIATDNLIKLSTDGIIWSPGSAGFDVQ  177 (557)
Q Consensus       101 vd~v~~d~~s~Gq~ph~Lk~~~kpkl~lGE~VsIIqHP---~pK~laIrEnKVv~~~DnfIhysTDt~~wSSGSAgFn~q  177 (557)
                      |+......... ................|+.|+++|||   .........++|....+++|.|..|+.+|+||||+||+.
T Consensus        99 l~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~SGgPv~~~~  177 (216)
T d2o8la1          99 FSPNEQNKHIG-EVVKPATMSNNAETQTNQNITVTGYPGDKPVATMWESKGKITYLKGEAMQYDLSTTGGNSGSPVFNEK  177 (216)
T ss_dssp             ECCCTTSCCTT-TSSCCCEECCCTTCCTTCEEEEEECCTTSSTTCEEEEEEEEEEEETTEEEESCCCCTTCTTCEEECTT
T ss_pred             ecccccccccc-cceeeeeccccccccCCceeEEEEccCCCceeeEEEEeeEEEEccCCeEEEecCcCCCCCCCcEECCC
Confidence            97655543322 11112233333467789999999999   444455678899999999999999999999999999999


Q ss_pred             CCeeEEEeccccccCCCCCCCCCCcCCCCCccccccccccCcchh-HHhHHHhhhcCC
Q 008706          178 GNLAFMICDPMKLATSPNTKSSSTSSSSSSSWKKDSSMQFGIPIP-IICDWLNQHWEG  234 (557)
Q Consensus       178 gnlafmVc~p~~lA~sP~~~~sstSssss~s~kk~~i~q~GI~Is-sI~~wl~qhw~g  234 (557)
                      |+    |+--|. .+.++                  -.+.+++|. .|.+||+|+-++
T Consensus       178 g~----vVGI~s-~g~~~------------------~~~~~v~~~~~~~~~i~~~i~~  212 (216)
T d2o8la1         178 NE----VIGIHW-GGVPN------------------EFNGAVFINENVRNFLKQNIED  212 (216)
T ss_dssp             SC----EEEEEE-EEETT------------------TEEEEEECCHHHHHHHHHHCTT
T ss_pred             CE----EEEEEe-eecCC------------------CCcceEecCHHHHHHHHHhhhh
Confidence            77    444454 33222                  145678877 588999987653
>d1agja_ b.47.1.1 (A:) Epidermolytic (exfoliative) toxin A {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2z9ia2 b.47.1.1 (A:6-226) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1qtfa_ b.47.1.1 (A:) Exfoliative toxin B {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1lcya2 b.47.1.1 (A:6-210) Mitochondrial serine protease HtrA2, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qf3a1 b.47.1.1 (A:43-252) Stress sensor protease DegS, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l1ja_ b.47.1.1 (A:) Protease Do (DegP, HtrA), catalytic domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1p3ca_ b.47.1.1 (A:) Glutamyl endopeptidase {Bacillus intermedius [TaxId: 1400]} Back     information, alignment and structure
>d1ky9a2 b.47.1.1 (A:11-259) Protease Do (DegP, HtrA), catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lvmb_ b.47.1.3 (B:) TEV protease (nucleat inclusion protein A, NIA) {Tobacco etch virus, TEV [TaxId: 12227]} Back     information, alignment and structure
>d2bhga1 b.47.1.4 (A:7-205) 3C cysteine protease (picornain 3C) {Foot-and-mouth disease virus FMDV [TaxId: 12110]} Back     information, alignment and structure
>d2qaaa1 b.47.1.1 (A:16-242) Protease B {Streptomyces griseus, strain k1 [TaxId: 1911]} Back     information, alignment and structure
>d1arba_ b.47.1.1 (A:) Achromobacter protease {Achromobacter lyticus, strain m497-1 [TaxId: 224]} Back     information, alignment and structure
>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1 [TaxId: 1911]} Back     information, alignment and structure
>d1cqqa_ b.47.1.4 (A:) 3C cysteine protease (picornain 3C) {Human rhinovirus 2 [TaxId: 12130]} Back     information, alignment and structure
>d2h5ca1 b.47.1.1 (A:15A-245) alpha-Lytic protease {Lysobacter enzymogenes, 495 [TaxId: 69]} Back     information, alignment and structure
>d1xx9a_ b.47.1.2 (A:) Coagulation factor XI {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rjxb_ b.47.1.2 (B:) Plasmin(ogen), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z8ga1 b.47.1.2 (A:163-417) Hepsin, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gdna_ b.47.1.2 (A:) Trypsin(ogen) {Mold (Fusarium oxysporum) [TaxId: 5507]} Back     information, alignment and structure
>d1op0a_ b.47.1.2 (A:) Venom serine protease {Hundred-pace snake (Agkistrodon acutus) [TaxId: 36307]} Back     information, alignment and structure
>d1a7sa_ b.47.1.2 (A:) Heparin binding protein, HBP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eq9a_ b.47.1.2 (A:) (alpha,gamma)-chymotrypsin(ogen) {Red fire ant (Solenopsis invicta) [TaxId: 13686]} Back     information, alignment and structure
>d2f91a1 b.47.1.2 (A:16-244) Trypsin(ogen) {Narrow-clawed crayfish (Pontastacus leptodactylus) [TaxId: 6717]} Back     information, alignment and structure
>d1fq3a_ b.47.1.2 (A:) Granzyme B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fona_ b.47.1.2 (A:) Procarboxypeptidase A-S6 subunit III (zymogen E) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1hpga_ b.47.1.1 (A:) Glutamic acid-specific protease {Streptomyces griseus [TaxId: 1911]} Back     information, alignment and structure
>d2fpza1 b.47.1.2 (A:16-244) beta-Tryptase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1eaxa_ b.47.1.2 (A:) Matriptase MTSP1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gvkb_ b.47.1.2 (B:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1fuja_ b.47.1.2 (A:) Myeloblastin, PR3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2bz6h1 b.47.1.2 (H:16-257) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nn6a_ b.47.1.2 (A:) Chymase (mast cell protease I) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1brup_ b.47.1.2 (P:) Elastase {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d1ao5a_ b.47.1.2 (A:) Kallikrein-13 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lo6a_ b.47.1.2 (A:) Kallikrein 6 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1rfna_ b.47.1.2 (A:) Coagulation factor IXa, protease domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1si5h_ b.47.1.2 (H:) Hepatocyte growth factor, HGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1j16a_ b.47.1.2 (A:) Trypsin(ogen) {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2z7fe1 b.47.1.2 (E:16-243) Elastase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pytd_ b.47.1.2 (D:) (alpha,gamma)-chymotrypsin(ogen) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1t32a1 b.47.1.2 (A:16-244) Cathepsin G {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1autc_ b.47.1.2 (C:) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elva1 b.47.1.2 (A:410-668) Complement C1S protease, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1npma_ b.47.1.2 (A:) Neuropsin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1tona_ b.47.1.2 (A:) Tonin {Rat (Rattus rattus) [TaxId: 10117]} Back     information, alignment and structure
>d1m9ua_ b.47.1.2 (A:) Elastase {Worm (Eisenia fetida) [TaxId: 6396]} Back     information, alignment and structure
>d1ekbb_ b.47.1.2 (B:) Enteropeptidase (enterokinase light chain) {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1q3xa1 b.47.1.2 (A:445-686) Mannan-binding lectin serine protease 2 (MASP-2), catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure