Citrus Sinensis ID: 008710

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------
MDYRSHSQPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVFRGQ
cccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccc
cccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccHHccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHcccccHHHHHHccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHccccccHHHHHHHHHHHHHHHHHHHHHccc
mdyrshsqpeesapspsldDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTglgkginsgnssenrDAYLQLSVTVLAAFcrvpeiassedmvskvppILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSikgeewligkidlpdiqdsipsdrCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIaeseggliddntFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSiegedepspfysvfFLLPMlcqttmeiegckdlVSSGMYKAVAECLIKligpgrvtveddgcIFLACDTILNLLLKVKEqvrfpmdestSIHLLKALAYWTElnsvfrgq
mdyrshsqpeesapspsldDCLKLLKGERDEQRLAGLLVvtkfckgddavSLRKIYDAVGPRFLDRLLRTGLGkginsgnssenRDAYLQLSVTVLAAFCRVPeiassedmvskvPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIaesegglidDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVFRGQ
MDYRSHSQPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRllqlmlsklslEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVFRGQ
*********************LKLLK****EQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGIN*******RDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLKYEA*********SFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAK******GNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVF***
**********************KLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLR******************YLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALL***L*VMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLI**************DRCLLLVLESSRVEIAVLLNELAY****************FSKQRNVAIAFSLVEKIIRLIS**************FMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGP*****ED*GCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVFRG*
*****************LDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLKYEA*********SFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVFRGQ
***************PSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVFRGQ
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MDYRSHSQPEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTELNSVFRGQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query557 2.2.26 [Sep-21-2011]
Q640K1 720 Neurochondrin OS=Xenopus N/A no 0.761 0.588 0.236 1e-19
Q5ZIG0 702 Neurochondrin OS=Gallus g yes no 0.833 0.660 0.246 1e-19
Q2KJ97 729 Neurochondrin OS=Bos taur yes no 0.682 0.521 0.255 3e-14
Q9Z0E0 729 Neurochondrin OS=Mus musc yes no 0.682 0.521 0.255 2e-13
Q9UBB6 729 Neurochondrin OS=Homo sap yes no 0.682 0.521 0.253 3e-13
O35095 729 Neurochondrin OS=Rattus n yes no 0.682 0.521 0.255 5e-13
Q9VI25 723 Neurochondrin homolog OS= yes no 0.789 0.608 0.205 2e-12
>sp|Q640K1|NCDN_XENLA Neurochondrin OS=Xenopus laevis GN=ncdn PE=2 SV=1 Back     alignment and function desciption
 Score = 98.2 bits (243), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 120/507 (23%), Positives = 227/507 (44%), Gaps = 83/507 (16%)

Query: 17  SLDDCLKLLK-GERDEQRLAGLLVVTKFCKGD--DAVSLRKIYDAVGPRFLDRLLRTGLG 73
           +L+ CLK+L+  + D ++ A LL+VTK  +    +  + R+I+DAVG  F +RLL +   
Sbjct: 16  ALEKCLKVLQEAQTDNEQFAALLLVTKCAQAQEINNETRRRIFDAVGFTFPNRLLFS--- 72

Query: 74  KGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELM--LKESGT--- 128
              NS      ++ +  L +T+LA F   P +A    +V+K+P   E +    +SG    
Sbjct: 73  ---NSVPEGCPQNLFKSLGITLLACFSTDPVLAVHPQVVNKIPIFNETINISCQSGNKEV 129

Query: 129 -SILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLS 187
            S++E+ Y+ L  +  A+  G   L   G +  L      + + +   E A+++L  +L+
Sbjct: 130 VSMVEDAYQCLLGIL-ASPQGPKNLLSHGSIPYLC---QAYMNRNHFWEKALQILTSLLT 185

Query: 188 KLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVM 247
            L  +       ++L  ++T ++ EF       KF+   LL   L  +          ++
Sbjct: 186 VLPPKCWKKS-CTDLQLLLTRLSEEFGKEEGEWKFQLADLLPIFLPPS---------PIL 235

Query: 248 PDSKWSMY----MRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQD 303
            ++ W       +  G++ IL N+++ +++  AL LA  + +  G  W++        ++
Sbjct: 236 LETSWGKQCLKQLCKGLLKILSNKLSISQRDPALKLAACLANSYGSSWIMA-------EN 288

Query: 304 SIPSDRCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEK 363
            +   R L L++  + VE+ + L E                E   S+Q  +   ++LVE 
Sbjct: 289 KVVRSRFLALIVNLACVEVRMALEE---------------PEPLTSRQSVITACYALVE- 332

Query: 364 IIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLV 423
            + +++   E +  ++     ++++  + E    ++ YLQ     E+++   LLASVRL+
Sbjct: 333 -MGILACTKEEKHPVLGKEQKLQLIGVMQEACAAIIYYLQQVG-WEKQEDPFLLASVRLL 390

Query: 424 GSYLAETPHACKEKVRELLQ---------HMLSIEGEDEPS----------------PFY 458
           G++LAE     K +V +LL          H  S+     P                 P  
Sbjct: 391 GAWLAEETACLKLEVIQLLPFLVHYMRTCHQRSVICSKLPKEVSQVALLSNSWGNIWPGD 450

Query: 459 SVFFLLPMLCQTTMEIEGCKDLVSSGM 485
           ++ FLLP LC  + E    K L+S G+
Sbjct: 451 AIRFLLPALCHLSAEEVPRKVLISEGV 477
Probably involved in signal transduction, in the nervous system. Required for the spatial learning process. May also be involved in neurite outgrowth.
Xenopus laevis (taxid: 8355)
>sp|Q5ZIG0|NCDN_CHICK Neurochondrin OS=Gallus gallus GN=NCDN PE=2 SV=1 Back     alignment and function description
>sp|Q2KJ97|NCDN_BOVIN Neurochondrin OS=Bos taurus GN=NCDN PE=2 SV=1 Back     alignment and function description
>sp|Q9Z0E0|NCDN_MOUSE Neurochondrin OS=Mus musculus GN=Ncdn PE=1 SV=1 Back     alignment and function description
>sp|Q9UBB6|NCDN_HUMAN Neurochondrin OS=Homo sapiens GN=NCDN PE=1 SV=1 Back     alignment and function description
>sp|O35095|NCDN_RAT Neurochondrin OS=Rattus norvegicus GN=Ncdn PE=1 SV=2 Back     alignment and function description
>sp|Q9VI25|NCDN_DROME Neurochondrin homolog OS=Drosophila melanogaster GN=Neurochondrin PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
359475862629 PREDICTED: neurochondrin-like [Vitis vin 0.958 0.848 0.728 0.0
296082097 713 unnamed protein product [Vitis vinifera] 0.958 0.748 0.728 0.0
224143237618 predicted protein [Populus trichocarpa] 0.947 0.854 0.701 0.0
255548824631 conserved hypothetical protein [Ricinus 0.964 0.851 0.701 0.0
357466093620 Neurochondrin [Medicago truncatula] gi|3 0.953 0.856 0.630 0.0
356500443621 PREDICTED: neurochondrin-like [Glycine m 0.958 0.859 0.621 0.0
449455559634 PREDICTED: neurochondrin-like [Cucumis s 0.964 0.847 0.638 0.0
297802822621 neurochondrin family protein [Arabidopsi 0.944 0.847 0.654 0.0
356500168616 PREDICTED: neurochondrin-like [Glycine m 0.947 0.857 0.619 0.0
22329069618 neurochondrin family protein [Arabidopsi 0.956 0.862 0.637 0.0
>gi|359475862|ref|XP_002283008.2| PREDICTED: neurochondrin-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  805 bits (2080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/535 (72%), Positives = 464/535 (86%), Gaps = 1/535 (0%)

Query: 15  SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGK 74
           SPSL+DCLKLLKGERDEQRLAGLL+VTKFCKGDD  +LR++Y+AVG  FLDRLLRTG+GK
Sbjct: 4   SPSLEDCLKLLKGERDEQRLAGLLLVTKFCKGDDNAALRRVYNAVGIGFLDRLLRTGMGK 63

Query: 75  GINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEEC 134
           G  S +  +NRDAYLQLSVTVLAAFCRVPEIASSEDMV K+P ILE++ K+SG+ ++EEC
Sbjct: 64  GTISSSGGDNRDAYLQLSVTVLAAFCRVPEIASSEDMVLKIPLILEILSKQSGSHVVEEC 123

Query: 135 YEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLEII 194
           YEFL+LV+ +  DGV+ LY+SGG++VLA QMST ADGS    LA++L+QLMLS +SL+II
Sbjct: 124 YEFLFLVSTSCEDGVSALYKSGGLRVLASQMSTLADGSHSQALAMKLVQLMLSTVSLDII 183

Query: 195 TNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKWSM 254
            N+Y SELS +V V+AREFAVLH+ALKFE+LHLL+A+LSS YSA +H+ LR+M +  WS 
Sbjct: 184 NNEYSSELSMMVAVIAREFAVLHDALKFEALHLLSAILSSKYSAPVHDTLRIMSNDIWST 243

Query: 255 YMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLV 314
           Y+RVG+VAILQNRVAPAEKLQALILAES++SI GE WL+G+++LPD +DS+P+DRCLLLV
Sbjct: 244 YVRVGIVAILQNRVAPAEKLQALILAESVISILGERWLLGQMNLPDAKDSVPADRCLLLV 303

Query: 315 LESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAES 374
           LESSRVE+AVLLNELAYLKYE S N+SS AE    KQRN+AIAFSLVEK I+LISN+ E 
Sbjct: 304 LESSRVEVAVLLNELAYLKYETSNNSSSNAEIISLKQRNLAIAFSLVEKTIKLISNVVED 363

Query: 375 EGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPHAC 434
           E   ID+NT  KV++GLNET+GVVLEYLQDAK+H +KKG+DLLASVRL+GSYLAETP AC
Sbjct: 364 EVNPIDENTLSKVISGLNETVGVVLEYLQDAKDHGQKKGDDLLASVRLIGSYLAETPLAC 423

Query: 435 KEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKAVAECLI 494
           +EKVRELL+ MLSIEGEDEP PF+S+ FLLPMLCQ TMEIEGCK LVS G  KAV ECLI
Sbjct: 424 REKVRELLEFMLSIEGEDEPRPFFSICFLLPMLCQITMEIEGCKILVSCGGQKAVVECLI 483

Query: 495 KLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWTE 549
           KLIGP    +ED GCIFLACDTILNLLLK ++Q++F +DESTS+HLLKALAYWTE
Sbjct: 484 KLIGPNGCMIEDKGCIFLACDTILNLLLK-RDQIKFRLDESTSVHLLKALAYWTE 537

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296082097|emb|CBI21102.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224143237|ref|XP_002324889.1| predicted protein [Populus trichocarpa] gi|222866323|gb|EEF03454.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255548824|ref|XP_002515468.1| conserved hypothetical protein [Ricinus communis] gi|223545412|gb|EEF46917.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|357466093|ref|XP_003603331.1| Neurochondrin [Medicago truncatula] gi|355492379|gb|AES73582.1| Neurochondrin [Medicago truncatula] Back     alignment and taxonomy information
>gi|356500443|ref|XP_003519041.1| PREDICTED: neurochondrin-like [Glycine max] Back     alignment and taxonomy information
>gi|449455559|ref|XP_004145520.1| PREDICTED: neurochondrin-like [Cucumis sativus] gi|449485155|ref|XP_004157084.1| PREDICTED: neurochondrin-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297802822|ref|XP_002869295.1| neurochondrin family protein [Arabidopsis lyrata subsp. lyrata] gi|297315131|gb|EFH45554.1| neurochondrin family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356500168|ref|XP_003518905.1| PREDICTED: neurochondrin-like [Glycine max] Back     alignment and taxonomy information
>gi|22329069|ref|NP_194933.2| neurochondrin family protein [Arabidopsis thaliana] gi|59958338|gb|AAX12879.1| At4g32050 [Arabidopsis thaliana] gi|332660598|gb|AEE85998.1| neurochondrin family protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query557
TAIR|locus:2116647618 AT4G32050 [Arabidopsis thalian 0.953 0.859 0.628 2.2e-167
UNIPROTKB|F1NYQ7 702 NCDN "Neurochondrin" [Gallus g 0.542 0.430 0.272 4e-21
UNIPROTKB|F1NUP1 711 NCDN "Neurochondrin" [Gallus g 0.542 0.424 0.272 4.2e-21
UNIPROTKB|Q5ZIG0 702 NCDN "Neurochondrin" [Gallus g 0.542 0.430 0.269 1.1e-20
UNIPROTKB|Q640K1 720 ncdn "Neurochondrin" [Xenopus 0.518 0.401 0.239 1.4e-15
FB|FBgn0037447 723 Neurochondrin "Neurochondrin" 0.464 0.358 0.219 9.5e-10
UNIPROTKB|E2QW14 729 NCDN "Uncharacterized protein" 0.858 0.655 0.227 1.6e-09
UNIPROTKB|Q2KJ97 729 NCDN "Neurochondrin" [Bos taur 0.858 0.655 0.227 2e-09
UNIPROTKB|Q9UBB6 729 NCDN "Neurochondrin" [Homo sap 0.858 0.655 0.225 1.2e-08
MGI|MGI:1347351 729 Ncdn "neurochondrin" [Mus musc 0.856 0.654 0.226 1.2e-08
TAIR|locus:2116647 AT4G32050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1628 (578.1 bits), Expect = 2.2e-167, P = 2.2e-167
 Identities = 340/541 (62%), Positives = 411/541 (75%)

Query:     9 PEESAPSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLL 68
             P+E   SPSLDDCLKLLKGERDEQRLAGLL+VTKFCK DD VSL K+Y+AVG  FLDRL 
Sbjct:     5 PQEER-SPSLDDCLKLLKGERDEQRLAGLLLVTKFCKNDDIVSLNKVYEAVGTHFLDRLF 63

Query:    69 RTGLGKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGT 128
             RTG G    SG+  +NRD YLQ+S+TVLAAFCRVPEIASSE+MVS++P ILE+M K   T
Sbjct:    64 RTGSG----SGDGVDNRDVYLQISITVLAAFCRVPEIASSEEMVSRIPLILEVMSKGITT 119

Query:   129 SILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRXXXXXXXX 188
             ++LE+CYE LYLV+ A   G+ TL  SGG++V+A QMS   DGS  ME+AI+        
Sbjct:   120 NMLEDCYELLYLVSTACEAGLMTLINSGGLRVIAPQMSELPDGSHAMEVAIKILQLLVSK 179

Query:   189 XXXEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMP 248
                  +T +   ELS ++  VAR+FAVLHNALKFE+LHLL+AV SS YS LLHE LR MP
Sbjct:   180 LDCGSMTIERFLELSLVIAAVARQFAVLHNALKFEALHLLSAVFSSEYSELLHEPLRSMP 239

Query:   249 DSKWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSD 308
             D+ W+ YMR GVVAILQNRVAP+EKL ALILAE+++SI GE+WL+G + LP++   IP+D
Sbjct:   240 DNNWADYMRTGVVAILQNRVAPSEKLHALILAENMMSILGEKWLLGGVKLPNVD--IPAD 297

Query:   309 RCLLLVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLI 368
             RCLLLVLESS VEI+VLLN+LAY KYEA K+ +STAE    KQR + I FSLVEKII+ I
Sbjct:   298 RCLLLVLESSHVEISVLLNDLAYKKYEAPKD-NSTAEDILLKQRYLPIVFSLVEKIIKYI 356

Query:   369 SNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLA 428
             S+  E+EG L D+  F KV+  LNET+G V EYL+DAKEH  KKG DLLASVR++GSYLA
Sbjct:   357 SSAGENEGTLSDEAVFQKVIKILNETVGAVFEYLRDAKEHGIKKGTDLLASVRVIGSYLA 416

Query:   429 ETPHACKEKVRELLQHMLSIEGEDEPSPFYSVFFLLPMLCQTTMEIEGCKDLVSSGMYKA 488
             ETP ACKE+V++LL +MLS++GEDE SPF S  FLLPMLCQ TM  EGCK L  S    A
Sbjct:   417 ETPVACKEQVQDLLDYMLSVKGEDESSPFLSTCFLLPMLCQITMNAEGCKLLAYSRGDVA 476

Query:   489 VAECLIKLIGPGRVTVEDDGCIFLACDTILNLLLKVKEQVRFPMDESTSIHLLKALAYWT 548
             V ECLIKLI     +V++D  IFLACDTI+N+LLK +E++  P + ST   LLKALAYW 
Sbjct:   477 VVECLIKLIERCGESVDEDRSIFLACDTIMNILLK-REEIS-PPEISTFASLLKALAYWA 534

Query:   549 E 549
             +
Sbjct:   535 D 535
GO:0005737 "cytoplasm" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0007346 "regulation of mitotic cell cycle" evidence=RCA
UNIPROTKB|F1NYQ7 NCDN "Neurochondrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1NUP1 NCDN "Neurochondrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5ZIG0 NCDN "Neurochondrin" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q640K1 ncdn "Neurochondrin" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
FB|FBgn0037447 Neurochondrin "Neurochondrin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|E2QW14 NCDN "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q2KJ97 NCDN "Neurochondrin" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBB6 NCDN "Neurochondrin" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1347351 Ncdn "neurochondrin" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
pfam05536542 pfam05536, Neurochondrin, Neurochondrin 1e-147
>gnl|CDD|218626 pfam05536, Neurochondrin, Neurochondrin Back     alignment and domain information 
 Score =  434 bits (1117), Expect = e-147
 Identities = 190/547 (34%), Positives = 283/547 (51%), Gaps = 47/547 (8%)

Query: 15  SPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSL--RKIYDAVGPRFLDRLLRTGL 72
            P L+ CL LL+G RD ++ A LL+VTK  K  D  S   R I++AVG +FLDRLL TG 
Sbjct: 4   PPPLEKCLSLLRGARDTEKFAALLLVTKLVKAGDINSKTRRLIFEAVGFKFLDRLLLTGS 63

Query: 73  GKGINSGNSSENRDAYLQLSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILE 132
           G       S   R  YL L VT+LA FC  PE+A    +V+++P +LE +LK S  S++E
Sbjct: 64  GP------SGCPRHVYLDLGVTILACFCSEPELARHSQVVNRIPTLLECLLKSSDLSMVE 117

Query: 133 ECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSRLMELAIRLLQLMLSKLSLE 192
           +CYE L  +  AT  G   L   G +  L    S   +GS  +E A+ LL L+LS L  +
Sbjct: 118 DCYECLSAIA-ATPRGAKALLALGAVPALCQAYS---NGSFGLEQALHLLLLLLSALDSK 173

Query: 193 IITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSKW 252
             T   L +L+ ++T +A  F VL    KFE L LL  +L  +   +L           W
Sbjct: 174 SWTEKDL-DLTAVLTRLAELFQVLEGTRKFELLDLLPDLLPRSE-PILLR---SSQGEIW 228

Query: 253 SMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLL 312
              ++ G+ AIL +++ P+++  AL LA +++S  G +W+          D +P+ + LL
Sbjct: 229 LRQLQKGLAAILSSKLTPSQRDPALKLAANLLSALGPQWIFA-------GDKVPNSKFLL 281

Query: 313 LVLESSRVEIAVLLNELAYLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIA 372
           L+L  + VE+ V L ELA +            E    K R +   FSL+E  I+ +   A
Sbjct: 282 LLLNLACVEVRVTLEELAAV---------GQPEKIEQKSRVLTACFSLIEHGIKYLLR-A 331

Query: 373 ESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHERKKGNDLLASVRLVGSYLAETPH 432
             EG L+D    ++++  LNE  G VL++L+D K+ ++K  + +LA+VR++G++LAE   
Sbjct: 332 CVEGSLLDPAQKLQLITSLNEAFGAVLDFLRDVKDEKQKDPDFVLAAVRILGAWLAEETS 391

Query: 433 ACKEKVRELLQHMLSIEGEDEPS-------PFYSVFFLLPMLCQTTMEIEGCKDLVSSGM 485
           A K+++  LL   +S+    E         P  ++ FLLP LC  TME  G K L+S G 
Sbjct: 392 ALKKEISGLLDFFVSVARHSESEPDPASGLPIDALRFLLPALCHLTMEAVGRKILISEGG 451

Query: 486 YKAVAECLIKLIGPGRVTVEDDGC----IFLACDTILNLLLKVKEQVRFPMDESTSIHLL 541
           +K + + LIK I   +     +      +  ACD  LNL   V E      + +T   LL
Sbjct: 452 WKLLCDDLIKCIDDTKGLPSSNDSAEMSLQTACDIFLNLS--VTEPNLEIEEGATFTSLL 509

Query: 542 KALAYWT 548
           KAL  W 
Sbjct: 510 KALLQWA 516

This family contains several eukaryotic neurochondrin proteins. Neurochondrin induces hydroxyapatite resorptive activity in bone marrow cells resistant to bafilomycin A1, an inhibitor of macrophage- and osteoclast-mediated resorption. Expression of the gene is localised to chondrocyte, osteoblast, and osteocyte in the bone and to the hippocampus and Purkinje cell layer of cerebellum in the brain. Length = 542

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 557
PF05536543 Neurochondrin: Neurochondrin 100.0
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 100.0
KOG2611 698 consensus Neurochondrin/leucine-rich protein (Neur 99.67
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 96.25
PF05804708 KAP: Kinesin-associated protein (KAP) 95.55
PF08167165 RIX1: rRNA processing/ribosome biogenesis 93.36
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 93.28
PF10508503 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; 91.76
PF05804708 KAP: Kinesin-associated protein (KAP) 91.51
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 90.9
PF04826254 Arm_2: Armadillo-like; InterPro: IPR006911 This en 90.11
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 88.36
PF14666226 RICTOR_M: Rapamycin-insensitive companion of mTOR, 85.27
PF03224312 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 82.84
PF05536 543 Neurochondrin: Neurochondrin 80.78
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information 
Probab=100.00  E-value=6.3e-114  Score=948.50  Aligned_cols=506  Identities=37%  Similarity=0.561  Sum_probs=462.5

Q ss_pred             CCCccHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHH--HHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHH
Q 008710           13 APSPSLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAV--SLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQ   90 (557)
Q Consensus        13 ~~~~~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~--~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~   90 (557)
                      +++++++||+++||+++||||||||+||||++|++|++  +.|+||+||||+||+|||+|+.+      |+++|+++|++
T Consensus         2 ~~~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~------~~~~~~~~~~~   75 (543)
T PF05536_consen    2 GQSASLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSV------PSDCPPEEYLS   75 (543)
T ss_pred             CchHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCC------CCCCCHHHHHH
Confidence            46789999999999999999999999999999998876  46789999999999999999853      77889999999


Q ss_pred             HHHHHHHHhcCCccccCCcchhcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhccc
Q 008710           91 LSVTVLAAFCRVPEIASSEDMVSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFAD  170 (557)
Q Consensus        91 LavsvLa~F~~~pe~A~~~~~v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~  170 (557)
                      ||||||||||++|++|+||+|++|||.|+++++++++..+++||||||++|+ ++++|++++++.|+|++|+.++.   +
T Consensus        76 LavsvL~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~---~  151 (543)
T PF05536_consen   76 LAVSVLAAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIP---N  151 (543)
T ss_pred             HHHHHHHHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHH---h
Confidence            9999999999999999999999999999999999998777899999999998 89999999999999999866554   5


Q ss_pred             CcchHHHHHHHHHHHHhhcccccccccChhhHHHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCcc
Q 008710          171 GSRLMELAIRLLQLMLSKLSLEIITNDYLSELSTIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDS  250 (557)
Q Consensus       171 ~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~  250 (557)
                      ++++.|.|+++|+.++++.+.+. |+++.+.++.++++++++|+..|+..||++|++|+.||++.   |.+ ..+..++.
T Consensus       152 ~~~~~E~Al~lL~~Lls~~~~~~-~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~---~~~-~~~~~~~~  226 (543)
T PF05536_consen  152 QSFQMEIALNLLLNLLSRLGQKS-WAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRS---PIL-PLESPPSP  226 (543)
T ss_pred             CcchHHHHHHHHHHHHHhcchhh-hhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC---Ccc-ccccCChh
Confidence            88999999999999999986554 55999999999999999999999999999999999999997   322 33566889


Q ss_pred             chhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhcCCccccCCCCCCCCcCCCCccchHHHhhhhhhHHHHHhcchhh
Q 008710          251 KWSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIKGEEWLIGKIDLPDIQDSIPSDRCLLLVLESSRVEIAVLLNELA  330 (557)
Q Consensus       251 ~W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~G~~Wl~~~~~~~~~~~~~~~~kF~lLll~la~VEVr~~Lee~~  330 (557)
                      .|+++||+||++||+||++++||++||+|+++|++++|++|++++.+       ++++||++|++|++||||||+|+++.
T Consensus       227 ~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~~wl~~~~~-------~~~~~F~~Llv~l~~VEir~~L~~L~  299 (543)
T PF05536_consen  227 KWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGPEWLFADDK-------KSGKKFLLLLVNLACVEIRMSLEELL  299 (543)
T ss_pred             hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhChHhhcCCCC-------CCcccHHHHHHHHHHHHHHHHhHHhh
Confidence            99999999999999999999999999999999999999999999842       46789999999999999999999976


Q ss_pred             hhhhhcccCCCcchhhhhhhhhhhhhhHHHHHHHHHHHhhhccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 008710          331 YLKYEASKNTSSTAESFFSKQRNVAIAFSLVEKIIRLISNIAESEGGLIDDNTFMKVMNGLNETIGVVLEYLQDAKEHER  410 (557)
Q Consensus       331 ~~~~~~~~~~~~~~e~i~~~~~~L~~Cf~ilE~~I~~l~~~~e~~~~~l~~~~~~q~~~~L~Ea~~~VL~~L~~~~~~~~  410 (557)
                      +.     .    +.+.+..++++|++||+|+|++|+|+++..|.++..+++++++|++++|+|+|++|++||+|++++++
T Consensus       300 ~~-----~----~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~  370 (543)
T PF05536_consen  300 EQ-----L----NPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQ  370 (543)
T ss_pred             hc-----C----CchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            53     1    23556678999999999999999999998887888899999999999999999999999999999998


Q ss_pred             ccCchhHHHHHHHHHHhhcCchhhHHHHHhhhhhhhhccccCCCC-------CchhHHHHhhhhccccccchhhhhhhcc
Q 008710          411 KKGNDLLASVRLVGSYLAETPHACKEKVRELLQHMLSIEGEDEPS-------PFYSVFFLLPMLCQTTMEIEGCKDLVSS  483 (557)
Q Consensus       411 ~~~~~v~AsvRvLgawLAEe~sal~~~v~~LLPfll~~~~~~~~~-------~~d~lrfLLP~Lc~lT~e~~gr~il~~~  483 (557)
                      +.+++++|+||+||+||||||+++|+++++|||||++|.+++++.       ++|++|||||||||+|+|++|||+|+++
T Consensus       371 ~d~~~vlAsvR~L~~WLaEe~~~lr~~v~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e~~gr~~l~~~  450 (543)
T PF05536_consen  371 KDPDFVLASVRVLGAWLAEETSALRKEVYGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAEEEGRKILLSN  450 (543)
T ss_pred             cchHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhccHHHHHHHHhC
Confidence            855599999999999999999999999999999999999998877       9999999999999999999999999999


Q ss_pred             CChHHHHHHHHHHhcCCCcc-c---cCchHHHHHHHHHHHHHhhcccccc-CCCCccchHHHHHHHHHhhhhcc
Q 008710          484 GMYKAVAECLIKLIGPGRVT-V---EDDGCIFLACDTILNLLLKVKEQVR-FPMDESTSIHLLKALAYWTELNS  552 (557)
Q Consensus       484 ~~~~~L~~~l~~~~~~~~~~-~---~~~~~l~~aC~illNl~v~~~~~~~-~~~~~~~F~~ll~~l~~w~~~~~  552 (557)
                      |||++|++||.++.+..+.. .   ..+.+|+++||||||++++  +|.. ++ ++++|++||++|.+|+++++
T Consensus       451 ~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~--e~~~~~~-~~~~f~~ll~~l~~~~~~~~  521 (543)
T PF05536_consen  451 GGWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVT--EPKMDVE-EEATFIELLKALLQWADPSN  521 (543)
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhc--ccccccc-cchHHHHHHHHHHHhcCCCC
Confidence            99999999999987764332 1   2235999999999999999  6666 55 88999999999999999875

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown] Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>PF08167 RIX1: rRNA processing/ribosome biogenesis Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells Back     alignment and domain information
>PF05804 KAP: Kinesin-associated protein (KAP) Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF14666 RICTOR_M: Rapamycin-insensitive companion of mTOR, middle domain Back     alignment and domain information
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane Back     alignment and domain information
>PF05536 Neurochondrin: Neurochondrin Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query557
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 62.9 bits (152), Expect = 2e-10
 Identities = 85/568 (14%), Positives = 176/568 (30%), Gaps = 175/568 (30%)

Query: 18  LDDCLKLLKGERDEQ--RLAGLL------VVTKFCKGDDAVSLRKIYDAVGPRFL-DRLL 68
           +D  +     +      RL   L      +V KF +      LR  Y      FL   + 
Sbjct: 51  IDHIIMS--KDAVSGTLRLFWTLLSKQEEMVQKFVEE----VLRINYK-----FLMSPIK 99

Query: 69  RTGLGKGINSGNSSENRDAYLQLSVTVLAAF--CRVPEIASSEDMVSKVPP----ILELM 122
                  + +    E RD  L     V A +   R+         + ++ P    +++ +
Sbjct: 100 TEQRQPSMMTRMYIEQRDR-LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158

Query: 123 LKESGTSIL----------EECYEF-LYLVTNATGDGVTTLYESGGMKVLAFQM----ST 167
              SG + +          +   +F ++ +     +   T+ E   ++ L +Q+    ++
Sbjct: 159 -LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM--LQKLLYQIDPNWTS 215

Query: 168 FADGS-----RLMELAIRLLQLMLSKL---SLEIITNDYLSEL--------STIVT---- 207
            +D S     R+  +   L +L+ SK     L ++ N   ++           ++T    
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFK 275

Query: 208 --------VVAREFAVLHNALKF---ESLHLLTAVLSSNYSALLHEALRVMPDSKWSMYM 256
                         ++ H+++     E   LL   L      L  E L   P        
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-------R 328

Query: 257 RVGVV-AILQNRVA--------PAEKLQALILAESIVSIKGEE-----WLIGKIDLPDIQ 302
           R+ ++   +++ +A          +KL  +I + S+  ++  E       +  +  P   
Sbjct: 329 RLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SLNVLEPAEYRKMFDRLS-V-FPP-- 383

Query: 303 DS-IPSDRCLLLVL--ESSRVEIAVLLNELA-------------------YL-------- 332
            + IP+   LL ++  +  + ++ V++N+L                    YL        
Sbjct: 384 SAHIPTI--LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441

Query: 333 ----------KYEASKNTSSTAES-------FFS------KQRNVAIAFSLVEKI---IR 366
                      Y   K   S           F+S      K        +L   +    R
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFR 501

Query: 367 LISNIAESEGGLIDDNTFMKVMNGLNETIGVV---LEYLQDAKEHERKKGNDLLASVRLV 423
            +      E  +  D+T       +  T+  +     Y+ D      +  N +L  +  +
Sbjct: 502 FL------EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI 555

Query: 424 GSYLAETPHACKEKVRELLQHMLSIEGE 451
              L  + +        LL+  L  E E
Sbjct: 556 EENLICSKYTD------LLRIALMAEDE 577
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 97.55
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 97.11
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 97.08
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 96.98
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 96.93
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 96.86
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 96.77
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 96.76
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 96.69
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.65
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 96.5
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 96.44
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 96.3
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 96.04
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 96.03
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.94
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 95.86
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 95.71
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 95.66
3grl_A651 General vesicular transport factor P115; vesicle t 95.6
3nmz_A458 APC variant protein; protein-protein complex, arma 95.59
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 95.59
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 95.48
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 95.41
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 95.01
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 94.46
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 94.28
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 94.18
2z6h_A644 Catenin beta-1, beta-catenin; C-terminal domain, a 94.01
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 93.77
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 93.71
3nmw_A354 APC variant protein; ARMADIILO repeats domain, cel 93.33
2z6g_A780 B-catenin; FULL-length, beta-catenin, cell adhesio 93.33
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 92.78
3l6x_A584 Catenin delta-1; catenin, armadillo, ARM, JMD, CE 92.04
3tt9_A233 Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} 92.03
3nmz_A458 APC variant protein; protein-protein complex, arma 91.48
2qk2_A242 LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 85.68
4fdd_A 852 Transportin-1; heat repeats, karyopherin, nuclear 85.37
3opb_A778 SWI5-dependent HO expression protein 4; heat and a 85.28
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
Probab=97.55  E-value=0.0051  Score=57.70  Aligned_cols=236  Identities=17%  Similarity=0.214  Sum_probs=157.8

Q ss_pred             cHHHHHHHhccCCchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcchHHHHHhcCCCCCCCCCCCCcchHHHHHHHHHHH
Q 008710           17 SLDDCLKLLKGERDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRFLDRLLRTGLGKGINSGNSSENRDAYLQLSVTVL   96 (557)
Q Consensus        17 ~l~~cl~lLk~~~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~FL~RLL~T~~~~~~~~~~~~~~~~~~~~LavsvL   96 (557)
                      .+...+++|++.+.+-|..++..+.++...+ .+..+.+.++=+.+.|-++|+++             ...-+.-++..|
T Consensus         3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~-------------~~~v~~~a~~~L   68 (252)
T 4hxt_A            3 DVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTST-------------DSEVQKEAARAL   68 (252)
T ss_dssp             HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCS-------------CHHHHHHHHHHH
T ss_pred             cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCC-------------CHHHHHHHHHHH
Confidence            4778899999988888999999999999864 36677777776667777888763             144577788888


Q ss_pred             HHhcCC-ccccCCcchh--cchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHHHHHHHhhcccCcc
Q 008710           97 AAFCRV-PEIASSEDMV--SKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKVLAFQMSTFADGSR  173 (557)
Q Consensus        97 a~F~~~-pe~A~~~~~v--~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~l~~~i~~~~~~s~  173 (557)
                      ..++.. |+..  ..++  +-||.|++.+.. ++..+...|..+|..++...++..+.+.+.|+++.+...+..  ....
T Consensus        69 ~~l~~~~~~~~--~~~~~~~~i~~l~~ll~~-~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~--~~~~  143 (252)
T 4hxt_A           69 ANIASGPDEAI--KAIVDAGGVEVLVKLLTS-TDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS--TDSE  143 (252)
T ss_dssp             HHHTTSCHHHH--HHHHHTTHHHHHHHHTTC-SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHH
T ss_pred             HHHHcCChHHH--HHHHHCCCHHHHHHHHcC-CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC--CCHH
Confidence            998875 5443  2222  458999999875 456667999999999964578888999999999998554432  2233


Q ss_pred             hHHHHHHHHHHHHhhcccccccccChhhH--HHHHHHHHHHHhhhcchhhHHHHHHHHHhhccchhhhHHHHhhcCCccc
Q 008710          174 LMELAIRLLQLMLSKLSLEIITNDYLSEL--STIVTVVAREFAVLHNALKFESLHLLTAVLSSNYSALLHEALRVMPDSK  251 (557)
Q Consensus       174 ~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l--~~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~~~~~~~~~~~~~~~~~  251 (557)
                      -...|+..|..+..... +     ..+.+  ...++.+..-+.......+..++..|..+.... +......        
T Consensus       144 ~~~~a~~~L~~l~~~~~-~-----~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l--------  208 (252)
T 4hxt_A          144 VQKEAARALANIASGPD-E-----AIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAI--------  208 (252)
T ss_dssp             HHHHHHHHHHHHTTSCH-H-----HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHH--------
T ss_pred             HHHHHHHHHHHHHcCCH-H-----HHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHH--------
Confidence            45667777777655321 1     11111  125555666555666688888999998888643 2211111        


Q ss_pred             hhHHHHHHHHHHHhcCCChhhhhhHHHHHHHHHhhc
Q 008710          252 WSMYMRVGVVAILQNRVAPAEKLQALILAESIVSIK  287 (557)
Q Consensus       252 W~~~ir~GL~~IL~skv~~~qR~~aL~Laa~ll~l~  287 (557)
                      ....+..-|..++++. .+.-|..|+.....+....
T Consensus       209 ~~~~~i~~L~~ll~~~-~~~v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          209 VDAGGVEVLQKLLTST-DSEVQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHTC
T ss_pred             HHCCCHHHHHHHHCCC-cHHHHHHHHHHHHHHHcCC
Confidence            0112334566666654 4566777777766666544
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Back     alignment and structure
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Back     alignment and structure
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Back     alignment and structure
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} Back     alignment and structure
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Back     alignment and structure
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query557
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 97.36
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 97.17
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 96.94
d1jdha_529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.4
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.13
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 96.05
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 95.09
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 94.12
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 85.93
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 84.16
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0043  Score=58.04  Aligned_cols=194  Identities=15%  Similarity=0.258  Sum_probs=129.9

Q ss_pred             cHHHHHHHhccC------------CchhHHHHHHHHHhcCCCCCHHHHHHHHHhcCcch-HHHHHhcCCCCCCCCCCCCc
Q 008710           17 SLDDCLKLLKGE------------RDEQRLAGLLVVTKFCKGDDAVSLRKIYDAVGPRF-LDRLLRTGLGKGINSGNSSE   83 (557)
Q Consensus        17 ~l~~cl~lLk~~------------~D~~kfagLlLvtkl~~~~d~~~~~~v~~Aig~~F-L~RLL~T~~~~~~~~~~~~~   83 (557)
                      .+++|++.|..+            +++.|-.++-.+..+++  |.+..+.+...=|... +.++|+++            
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~L~~L~~--~~d~a~~l~~~gg~~~ll~~ll~s~------------   71 (264)
T d1xqra1           6 QMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCE--NMDNAADFCQLSGMHLLVGRYLEAG------------   71 (264)
T ss_dssp             HHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHT--SHHHHHHHHHTTHHHHHHHTTTTCS------------
T ss_pred             HHHHHHHHhhccCcchHHHhhcCCCHHHHHHHHHHHHHHHc--CHHHHHHHHHcCCHHHHHHHHhCCC------------
Confidence            466777776643            67788888889999986  4444445544444443 45676653            


Q ss_pred             chHHHHHHHHHHHHHhcC-CccccCCcch--hcchhHHHHHhhcccccchHHHHHHHHHHHHhcCchhhhHhhhcCChHH
Q 008710           84 NRDAYLQLSVTVLAAFCR-VPEIASSEDM--VSKVPPILELMLKESGTSILEECYEFLYLVTNATGDGVTTLYESGGMKV  160 (557)
Q Consensus        84 ~~~~~~~LavsvLa~F~~-~pe~A~~~~~--v~~IP~l~~~l~~~~~~~~~~~~~~~L~~ia~a~~~G~~~l~~~g~i~~  160 (557)
                       ....+.-|..+|+.+|. .|..-  ..+  .+-||.|+..+.+..+..+...+..+|..++...+.+.+.+.+.|+++.
T Consensus        72 -~~~vr~~A~~~L~~l~~~~~~~~--~~~~~~~~i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~  148 (264)
T d1xqra1          72 -AAGLRWRAAQLIGTCSQNVAAIQ--EQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSV  148 (264)
T ss_dssp             -SHHHHHHHHHHHHHHHTTCHHHH--HHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             -CHHHHHHHHHHHHHHHHHHHHHH--HHHHHcCchHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhH
Confidence             24567779999999997 44332  112  2458999999977666666788889998886567888999999999999


Q ss_pred             HHHHHhhcccCcchHHHHHHHHHHHHhhcccccccccChhhHH--HHHHHHHHHHhhhcchhhHHHHHHHHHhhccc
Q 008710          161 LAFQMSTFADGSRLMELAIRLLQLMLSKLSLEIITNDYLSELS--TIVTVVAREFAVLHNALKFESLHLLTAVLSSN  235 (557)
Q Consensus       161 l~~~i~~~~~~s~~~e~Al~LL~~Ll~~~~~~~~~~~~~~~l~--~lv~~la~~F~~~~~~~Kfe~~~~L~~lL~~~  235 (557)
                      +...+..  +...-...|...|..+.....      ++...+.  .+++.+..-....+.+.+-.++..|..+....
T Consensus       149 L~~lL~~--~~~~~~~~a~~~L~~l~~~~~------~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~  217 (264)
T d1xqra1         149 LMRAMQQ--QVQKLKVKSAFLLQNLLVGHP------EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF  217 (264)
T ss_dssp             HHHHHHS--SCHHHHHHHHHHHHHHHHHCG------GGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhc--CchHHHHHHHHHHHHHHhccH------HHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC
Confidence            8666653  333344567777777765531      1111222  14666777666667777777788887776554
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure