Citrus Sinensis ID: 008750
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 555 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LV93 | 692 | ABC transporter F family | yes | no | 0.969 | 0.777 | 0.785 | 0.0 | |
| Q9FIB4 | 678 | ABC transporter F family | no | no | 0.954 | 0.781 | 0.759 | 0.0 | |
| O05519 | 642 | Uncharacterized ABC trans | yes | no | 0.805 | 0.696 | 0.357 | 5e-70 | |
| O34512 | 518 | Uncharacterized ABC trans | no | no | 0.8 | 0.857 | 0.323 | 1e-57 | |
| P0A9U3 | 530 | Uncharacterized ABC trans | N/A | no | 0.783 | 0.820 | 0.316 | 4e-56 | |
| P0A9U4 | 530 | Uncharacterized ABC trans | yes | no | 0.783 | 0.820 | 0.316 | 4e-56 | |
| P0A9U5 | 530 | Uncharacterized ABC trans | N/A | no | 0.783 | 0.820 | 0.316 | 4e-56 | |
| P0A9W5 | 555 | Uncharacterized ABC trans | no | no | 0.767 | 0.767 | 0.323 | 2e-54 | |
| P0A9W3 | 555 | Uncharacterized ABC trans | N/A | no | 0.767 | 0.767 | 0.323 | 2e-54 | |
| P0A9W4 | 555 | Uncharacterized ABC trans | N/A | no | 0.767 | 0.767 | 0.323 | 2e-54 |
| >sp|Q9LV93|AB5F_ARATH ABC transporter F family member 5 OS=Arabidopsis thaliana GN=ABCF5 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/542 (78%), Positives = 478/542 (88%), Gaps = 4/542 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EK 549
EK
Sbjct: 548 EK 549
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIB4|AB2F_ARATH ABC transporter F family member 2 OS=Arabidopsis thaliana GN=ABCF2 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 820 bits (2118), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 421/554 (75%), Positives = 470/554 (84%), Gaps = 24/554 (4%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQR---PRITCQVSAATVE 55
M +TT + NLRS+FF T FT L+ R P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFT-----NTITCPTLFTFKLSSVSNPRRVFPNIRAHVSAAS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKD
Sbjct: 54 ------SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
AK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 HAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+Q
Sbjct: 282 EWLEGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YAAWEKQQ+EIE TKDLI+RL AGANSGRASSAEKKLE+LQEEE IEKPFQRKQMKIRFP
Sbjct: 342 YAAWEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFP 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEK 549
MLDRKVSLLSGGEK
Sbjct: 522 MLDRKVSLLSGGEK 535
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O05519|YDIF_BACSU Uncharacterized ABC transporter ATP-binding protein YdiF OS=Bacillus subtilis (strain 168) GN=ydiF PE=3 SV=2 | Back alignment and function description |
|---|
Score = 265 bits (678), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 165/462 (35%), Positives = 258/462 (55%), Gaps = 15/462 (3%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SKS+ T+L ++ EV+ +++ +VG NGAGK+T L+IIAGQ + G +IK
Sbjct: 4 LQVNQLSKSFGADTILNNIKLEVRNRDRIAIVGRNGAGKSTLLKIIAGQLSYEKGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--AVDDMDLMGR 215
K ++ + +L+Q + T++EE ++ F +E+ +A+E A D +
Sbjct: 64 K-DITMGYLAQHTGLDSKLTIKEELLTVFDH----LKAMEKEMRAMEEKMAAADPGELES 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++ +D LQ++ + +A V ++ LGF+ D V S S G + R++LGK+LL
Sbjct: 119 IMKTYDRLQQEFKDKGGYQYEADVRSVLHGLGFSHFDDSTQVQSLSGGQKTRLALGKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
PDLL+LDEPTNHLD+DT+ WLE YL ++I+SHDR FLD++ ++ E S+
Sbjct: 179 TQPDLLILDEPTNHLDIDTLTWLEHYLQGYSGAILIVSHDRYFLDKVVNQVYEVSRAESK 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR-LGAGANSGRASSAEKKLER 394
Y GNYS Y+ +KAA E +EKQQ EI + +D ++R L + + RA S K+LER
Sbjct: 239 KYHGNYSAYLDQKAAQYEKDLKMYEKQQDEIAKLQDFVDRNLARASTTKRAQSRRKQLER 298
Query: 395 LQEEEQIEKPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEK 452
+ + + KP K F +SG V+ +++L YE++ L + + RGE
Sbjct: 299 M---DVMSKPLGDEKSANFHFDITKQSGNEVLRVQDLTISYENQPPLLTEVSFMLTRGES 355
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
A++GPNG GKSTLLK ++ KP G + G NV Y++Q QAE L K VL+ +
Sbjct: 356 AALVGPNGIGKSTLLKTLIDTLKPDQGTISYGS-NVSVGYYDQEQAE-LTSSKRVLDELW 413
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554
+ +I+ LG F D + + V LSGGEK L
Sbjct: 414 DEYPGLPEKEIRTCLGNFLFSGDDVLKPVHSLSGGEKARLAL 455
|
Bacillus subtilis (strain 168) (taxid: 224308) |
| >sp|O34512|YFMM_BACSU Uncharacterized ABC transporter ATP-binding protein YfmM OS=Bacillus subtilis (strain 168) GN=yfmM PE=3 SV=2 | Back alignment and function description |
|---|
Score = 224 bits (572), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 147/455 (32%), Positives = 246/455 (54%), Gaps = 11/455 (2%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S + ++++S + + +V++ + KGE VGL+G NG GK+T + II G+ EPD G V
Sbjct: 2 SILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKVE 61
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K N+++ +L Q + +++R+ AF + ++ + + A D D + +
Sbjct: 62 WSK-NVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEA--DPDELEK 118
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
LL+E ++Q + +D+KV ++ LG + +R V S G + ++ L K+LL
Sbjct: 119 LLEEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQRTKVLLAKLLL 178
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
+ P++LLLDEPTN+LD IEWL+ YL + + ++ISHD FL+ + I E
Sbjct: 179 EKPEILLLDEPTNYLDEQHIEWLKRYLQEYENAFILISHDIPFLNSVINLIYHVENQELT 238
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS-GRASSAEKKLER 394
Y G+Y Q++ + AA++KQQ+E+ + KD + R A ++ A S +KKL++
Sbjct: 239 RYVGDYHQFMEVYEVKKQQLEAAYKKQQQEVAELKDFVARNKARVSTRNMAMSRQKKLDK 298
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
+ + IE ++ + + F SG+ + K+L GY D L NL +ERG+K A
Sbjct: 299 M---DMIELAAEKPKPEFHFKPARTSGKLIFETKDLVIGY-DSPLSRPLNLRMERGQKIA 354
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
+ G NG GK+TLLK ++G +P G V GEH + YFEQ E + T +E V
Sbjct: 355 LYGANGIGKTTLLKSLLGEIQPLEGSVERGEH-IYTGYFEQEVKET--NNNTCIEEVWSE 411
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ +I+ L +C ++ +VS+LSGGEK
Sbjct: 412 FPSYTQYEIRAALAKCGLTTKHIESRVSVLSGGEK 446
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|P0A9U3|YBIT_ECOLI Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli (strain K12) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 247/452 (54%), Gaps = 17/452 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEK 549
DD ++ +LGR F D + + +LSGGEK
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEK 444
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9U4|YBIT_ECOL6 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 247/452 (54%), Gaps = 17/452 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEK 549
DD ++ +LGR F D + + +LSGGEK
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEK 444
|
Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) (taxid: 199310) |
| >sp|P0A9U5|YBIT_ECO57 Uncharacterized ABC transporter ATP-binding protein YbiT OS=Escherichia coli O157:H7 GN=ybiT PE=3 SV=1 | Back alignment and function description |
|---|
Score = 219 bits (558), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 143/452 (31%), Positives = 247/452 (54%), Gaps = 17/452 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + + ++++ + G + GL+G NG+GK+T ++I+ G EP GNV N
Sbjct: 6 NVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFMKILGGDLEPTLGNV-SLDPNE 64
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+I L Q+ TV + + KE E+ + +R+ E + +D G + +
Sbjct: 65 RIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRIYALPEMSEED----GYKVAD-- 118
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ K ++ + +A+ +L+ +G + ++ + GW++R+ L + L DPD+L
Sbjct: 119 -LEVKYGEMDGYSAEARAGELLLGVGIPVEQHYGPMSEVAPGWKLRVLLAQALFADPDIL 177
Query: 282 LLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341
LLDEPTN+LD+DTI WLE L ++D M+IISHDR FL+ +CT + + + G R Y GNY
Sbjct: 178 LLDEPTNNLDIDTIRWLEQVLNERDSTMIIISHDRHFLNMVCTHMADLDYGELRVYPGNY 237
Query: 342 SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQEEEQ 400
+Y+ E A K++ +I + + ++R A A+ R A+S +++++++ EE
Sbjct: 238 DEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEV 297
Query: 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNG 460
K R+ IRF + + R+ + ++ L G+++ LF NL +E GEK A++G NG
Sbjct: 298 --KASSRQNPFIRFEQDKKLFRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNG 355
Query: 461 CGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
GKSTLLK ++G +P G V E N Y+ Q+ + D TV E +++ ++
Sbjct: 356 VGKSTLLKTLVGDLQPDSGTVKWSE-NARIGYYAQDHEYEFENDLTVFEWMSQWKQEG-- 412
Query: 521 DD---IKGLLGRCNFKADMLDRKVSLLSGGEK 549
DD ++ +LGR F D + + +LSGGEK
Sbjct: 413 DDEQAVRSILGRLLFSQDDIKKPAKVLSGGEK 444
|
Escherichia coli O157:H7 (taxid: 83334) |
| >sp|P0A9W5|YJJK_SHIFL Uncharacterized ABC transporter ATP-binding protein YjjK OS=Shigella flexneri GN=yjjK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 236/442 (53%), Gaps = 16/442 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
GR NFK ++V LSGGE+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGER 450
|
Shigella flexneri (taxid: 623) |
| >sp|P0A9W3|YJJK_ECOLI Uncharacterized ABC transporter ATP-binding protein YjjK OS=Escherichia coli (strain K12) GN=yjjK PE=1 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 236/442 (53%), Gaps = 16/442 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
GR NFK ++V LSGGE+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGER 450
|
Escherichia coli (strain K12) (taxid: 83333) |
| >sp|P0A9W4|YJJK_ECO57 Uncharacterized ABC transporter ATP-binding protein YjjK OS=Escherichia coli O157:H7 GN=yjjK PE=3 SV=2 | Back alignment and function description |
|---|
Score = 213 bits (543), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 143/442 (32%), Positives = 236/442 (53%), Gaps = 16/442 (3%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LK+++ G K+G++G+NGAGK+T LRI+AG ++ G + + ++KI +L QE +
Sbjct: 21 ILKNISLSFFPGAKIGVLGLNGAGKSTLLRIMAGIDKDIEGEA-RPQPDIKIGYLPQEPQ 79
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
++ TVRE A E + +L+ V D D +L E L+ QA +
Sbjct: 80 LNPEHTVRESIEEAVSEVVNALKRLDEVYALYADPDADFD---KLAAEQGRLEEIIQAHD 136
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L+ ++ + L D D +A+ S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 137 GHNLNVQLERAADALRLP--DWDAKIANLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 194
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
+++ WLE +L + +V I+HDR FLD + I+E + G +EGNYS ++ +K
Sbjct: 195 AESVAWLERFLHDFEGTVVAITHDRYFLDNVAGWILELDRGEGIPWEGNYSSWLEQKDQR 254
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+ + + +++ IE+ + + + GR S + +L R +E E + + +
Sbjct: 255 LAQEASQEAARRKSIEKELEWVRQ----GTKGRQSKGKARLARFEELNSTEYQKRNETNE 310
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
+ P R G V+ + NL Y DRLL + + +I +G IIGPNG GKSTL ++I
Sbjct: 311 LFIPPGPRLGDKVLEVSNLRKSYGDRLLIDDLSFSIPKGAIVGIIGPNGAGKSTLFRMIS 370
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KGLL 527
G E+P G + LGE L + +++D KTV E V+ + +I + + +
Sbjct: 371 GQEQPDSGTITLGETVKLASV--DQFRDSMDNSKTVWEEVSGGLDIMKIGNTEMPSRAYV 428
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
GR NFK ++V LSGGE+
Sbjct: 429 GRFNFKGVDQGKRVGELSGGER 450
|
Escherichia coli O157:H7 (taxid: 83334) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 555 | ||||||
| 255576683 | 640 | abc transporter, putative [Ricinus commu | 0.985 | 0.854 | 0.800 | 0.0 | |
| 224081252 | 722 | ABC transporter family protein [Populus | 0.976 | 0.750 | 0.774 | 0.0 | |
| 297797507 | 694 | ATGCN5 [Arabidopsis lyrata subsp. lyrata | 0.976 | 0.780 | 0.792 | 0.0 | |
| 224093878 | 635 | ABC transporter family protein [Populus | 0.774 | 0.677 | 0.851 | 0.0 | |
| 15912315 | 692 | AT5g64840/MXK3_6 [Arabidopsis thaliana] | 0.969 | 0.777 | 0.785 | 0.0 | |
| 15238261 | 692 | ABC transporter F family member 5 [Arabi | 0.969 | 0.777 | 0.785 | 0.0 | |
| 449448414 | 714 | PREDICTED: ABC transporter F family memb | 0.985 | 0.766 | 0.761 | 0.0 | |
| 356509032 | 696 | PREDICTED: ABC transporter F family memb | 0.953 | 0.760 | 0.782 | 0.0 | |
| 297811095 | 678 | hypothetical protein ARALYDRAFT_487818 [ | 0.954 | 0.781 | 0.767 | 0.0 | |
| 225438549 | 718 | PREDICTED: ABC transporter F family memb | 0.989 | 0.764 | 0.761 | 0.0 |
| >gi|255576683|ref|XP_002529230.1| abc transporter, putative [Ricinus communis] gi|223531303|gb|EEF33143.1| abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 872 bits (2254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 449/561 (80%), Positives = 495/561 (88%), Gaps = 14/561 (2%)
Query: 1 MDVTT--TTTNLRSSFFSTLQPRFTPFASAKSFTN-----SLNFTKKQRP--RITCQVSA 51
MD++T +L SS F T P PF S S+ F RP RIT ++S
Sbjct: 1 MDLSTKFHRLDLHSSSFLTGSPLRPPFKQNSSLPIITKPISVKFPS-TRPTSRITARLST 59
Query: 52 ATVEKKSIAKAQSD---VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK 108
ATVE S+A A +D +ESLFSSS+ +K+ S KQSNTGAS I+SG+KLENISKSYK
Sbjct: 60 ATVET-SVADADTDTTDIESLFSSSSGNDFDKRASRKQSNTGASGITSGIKLENISKSYK 118
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII GQEE DSGNVIKAK NMK+AFLSQ
Sbjct: 119 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIITGQEEADSGNVIKAKPNMKVAFLSQ 178
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
EFEVS+SRTV+EEFMSAF+EEMEIAG+LE+VQKA+E++V+D++LMGRLLDEFDLLQR+AQ
Sbjct: 179 EFEVSLSRTVKEEFMSAFEEEMEIAGRLEKVQKAIENSVEDLELMGRLLDEFDLLQRRAQ 238
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
AV+LD +DAK+SKLMPELGF +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTN
Sbjct: 239 AVDLDEVDAKISKLMPELGFAPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTN 298
Query: 289 HLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
HLDLDTIEWLEGYL KQ+VPMVIISHDRAFLDQLCTKIVETEMGV+RTY+GNYSQY++ K
Sbjct: 299 HLDLDTIEWLEGYLQKQEVPMVIISHDRAFLDQLCTKIVETEMGVARTYDGNYSQYLVSK 358
Query: 349 AAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRK 408
AAWIESQYAAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQRK
Sbjct: 359 AAWIESQYAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQRK 418
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
QMKIRFPERGRSGR+VV IKNLEF YED++LFN+ NLTIERGEK AIIGPNGCGKSTLLK
Sbjct: 419 QMKIRFPERGRSGRNVVMIKNLEFSYEDQVLFNKTNLTIERGEKIAIIGPNGCGKSTLLK 478
Query: 469 LIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528
LIMGLEKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+TV E AEDWRIDDIKGLLG
Sbjct: 479 LIMGLEKPNAGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEVAEDWRIDDIKGLLG 538
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
RCNFKADMLDRKVSLLSGGEK
Sbjct: 539 RCNFKADMLDRKVSLLSGGEK 559
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224081252|ref|XP_002306353.1| ABC transporter family protein [Populus trichocarpa] gi|222855802|gb|EEE93349.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 432/558 (77%), Positives = 490/558 (87%), Gaps = 16/558 (2%)
Query: 7 TTNLRSSFF------------STLQPRFTPFASAKSF--TNSLNF-TKKQRPRITCQVSA 51
+T S+FF S L+P + ++ + TNS NF T++ +I ++S
Sbjct: 4 STKFHSTFFTGATLFNPQQKTSLLKPNPSLLSTKFTINNTNSFNFPTRRPNSKIKARLST 63
Query: 52 ATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT 111
ATVE S+A+ ++D ESLFSS++D +K KQSN GAS ISSG+KLENISKSYKGVT
Sbjct: 64 ATVET-SVAEPETDTESLFSSNSDVDFDKNRLRKQSNRGASGISSGIKLENISKSYKGVT 122
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI+ G EEPDSGNVIKAK+NMKIAFLSQEFE
Sbjct: 123 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIMTGLEEPDSGNVIKAKANMKIAFLSQEFE 182
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
VSMSRTV+EEFMSAFKEEMEIA +LE+VQKA+E +V+D++LMGRLLDEFDLLQR+AQAV+
Sbjct: 183 VSMSRTVKEEFMSAFKEEMEIAKRLEKVQKAIEGSVEDLELMGRLLDEFDLLQRRAQAVD 242
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD +DAK+SKLMP+LGF+ +D DRLVA+FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD
Sbjct: 243 LDEVDAKISKLMPQLGFSPEDSDRLVAAFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 302
Query: 292 LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351
LDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W
Sbjct: 303 LDTIEWLEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEW 362
Query: 352 IESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411
+E+Q AAWEK QREIE T+DLI+RLG+GANSGRASSAEKKLERLQEE+QIEKPFQRKQMK
Sbjct: 363 VEAQLAAWEKHQREIEHTRDLISRLGSGANSGRASSAEKKLERLQEEDQIEKPFQRKQMK 422
Query: 412 IRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471
IRFPERGRSGRSVV I+NLEFGYED++LFN+ NL IERGEK AI+GPNGCGKSTLLKLIM
Sbjct: 423 IRFPERGRSGRSVVAIRNLEFGYEDKVLFNKTNLMIERGEKIAILGPNGCGKSTLLKLIM 482
Query: 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN 531
G+EKP GE++LGEHNVLPNYFEQNQAEALDLDKTVL+TV E AEDWR+DDIKGLLGRCN
Sbjct: 483 GVEKPSRGEIVLGEHNVLPNYFEQNQAEALDLDKTVLQTVEEVAEDWRLDDIKGLLGRCN 542
Query: 532 FKADMLDRKVSLLSGGEK 549
FK DMLDRKVSLLSGGEK
Sbjct: 543 FKVDMLDRKVSLLSGGEK 560
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797507|ref|XP_002866638.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] gi|297312473|gb|EFH42897.1| ATGCN5 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2207), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/544 (79%), Positives = 479/544 (88%), Gaps = 2/544 (0%)
Query: 7 TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDV 66
+ +LRS+FF+ L+P +P S +S++ ++ I QVS ++E S+ + Q ++
Sbjct: 9 SLDLRSTFFTGLRPCPSPIPSNFIKISSISNPRRGISTIRAQVSTISLET-SVKERQDEI 67
Query: 67 ESLFSSSADEFENKKYSN-KQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
ESLFS E ++ + N K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEK
Sbjct: 68 ESLFSKPTSEQDSDRRRNGKNSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEK 127
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
VGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMKIAFLSQEFEVSMS+TVREEFMSA
Sbjct: 128 VGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKIAFLSQEFEVSMSKTVREEFMSA 187
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
FKEEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPE
Sbjct: 188 FKEEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPE 247
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ 305
LGF ++D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQ
Sbjct: 248 LGFASEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQ 307
Query: 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQRE 365
DVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ+E
Sbjct: 308 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKE 367
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
I+ TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV
Sbjct: 368 IDSTKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVV 427
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+KN++FG+ED++LF +ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP GEV+LGE
Sbjct: 428 NVKNIDFGFEDKMLFKKANLAIERGEKIAIIGPNGCGKSTLLKLIMGLEKPMKGEVILGE 487
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
HNVLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLS
Sbjct: 488 HNVLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLS 547
Query: 546 GGEK 549
GGEK
Sbjct: 548 GGEK 551
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224093878|ref|XP_002310031.1| ABC transporter family protein [Populus trichocarpa] gi|222852934|gb|EEE90481.1| ABC transporter family protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/492 (85%), Positives = 463/492 (94%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
S A +++D+ESLFSS++D ++K SNKQSN GAS ISSG+KLENISKSYKGVTVLKDVT
Sbjct: 1 SGADSKTDIESLFSSNSDVEFDRKRSNKQSNGGASGISSGIKLENISKSYKGVTVLKDVT 60
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
WEVKKGEKVGLVGVNGAGKTTQLRII GQEEPDSGNVIKAK+NMKIAFLSQEFEVSMSRT
Sbjct: 61 WEVKKGEKVGLVGVNGAGKTTQLRIITGQEEPDSGNVIKAKANMKIAFLSQEFEVSMSRT 120
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
V+EEFMSAFKEEMEIA +LE+VQKA+E AV+D+DLMGRLLDEFDLLQR+AQAV+LD +DA
Sbjct: 121 VKEEFMSAFKEEMEIAERLEKVQKAIEGAVEDLDLMGRLLDEFDLLQRRAQAVDLDEVDA 180
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 297
K+SKLMPELGF+ +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW
Sbjct: 181 KISKLMPELGFSPEDSDRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW 240
Query: 298 LEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYA 357
LEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQY++ KA W+E+Q A
Sbjct: 241 LEGYLQKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYIISKAEWVEAQLA 300
Query: 358 AWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPER 417
AWEKQQ+EIE T++LI+RLGAGANSGRASSAEKKLERLQEE+QIEKPFQ KQMKIRFPER
Sbjct: 301 AWEKQQKEIEHTRELISRLGAGANSGRASSAEKKLERLQEEDQIEKPFQHKQMKIRFPER 360
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
GRSGRSVV I NLEFG+ED++LFN+ NL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 361 GRSGRSVVAINNLEFGFEDKVLFNKTNLMIERGEKIAIIGPNGCGKSTLLKLIMGLEKPT 420
Query: 478 GGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
GG++++GEHNVLPNYFEQNQAEALDLDKTV++TV E AEDWR+DDIKGLLGRCNFKADML
Sbjct: 421 GGQIMVGEHNVLPNYFEQNQAEALDLDKTVIQTVEEVAEDWRLDDIKGLLGRCNFKADML 480
Query: 538 DRKVSLLSGGEK 549
DRKVSLLSGGEK
Sbjct: 481 DRKVSLLSGGEK 492
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15912315|gb|AAL08291.1| AT5g64840/MXK3_6 [Arabidopsis thaliana] gi|23308219|gb|AAN18079.1| At5g64840/MXK3_6 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 845 bits (2184), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/542 (78%), Positives = 478/542 (88%), Gaps = 4/542 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKQNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EK 549
EK
Sbjct: 548 EK 549
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15238261|ref|NP_201289.1| ABC transporter F family member 5 [Arabidopsis thaliana] gi|75335535|sp|Q9LV93.1|AB5F_ARATH RecName: Full=ABC transporter F family member 5; Short=ABC transporter ABCF.5; Short=AtABCF5; AltName: Full=GCN20-type ATP-binding cassette protein GCN5 gi|8843748|dbj|BAA97296.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|110742654|dbj|BAE99239.1| ABC transporter protein 1-like [Arabidopsis thaliana] gi|332010577|gb|AED97960.1| ABC transporter F family member 5 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 844 bits (2181), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 426/542 (78%), Positives = 478/542 (88%), Gaps = 4/542 (0%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFE-NKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
LFS + + ++K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWEVK+GEKVG
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RLGAGANSGRAS+AEKKLE+LQE+E IEKPFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EK 549
EK
Sbjct: 548 EK 549
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448414|ref|XP_004141961.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] gi|449519128|ref|XP_004166587.1| PREDICTED: ABC transporter F family member 5-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 842 bits (2175), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 435/571 (76%), Positives = 488/571 (85%), Gaps = 24/571 (4%)
Query: 1 MDVTT--TTTNLRSSFFS---TLQPRFTPFASAKSFTN-------------SLNFTKKQR 42
MD+T +LRSSF + L R T F S++ + S+ +
Sbjct: 1 MDLTIKLHHLHLRSSFLTGSPLLDSRKTLFGSSQHHLSNRTVSQSIGGNFKSIRASSLPN 60
Query: 43 PR-ITCQVSAATVEKKSIAKAQS--DVESLFSS-SADEFENKKYSNKQSNTGASSISSGV 98
PR + ++ A VE S+A+ + D+ESL SS S EF+ K+ KQSN G S ISSGV
Sbjct: 61 PRRVNSRIEAVAVEA-SVAETSTKEDIESLLSSGSVGEFDGKRVF-KQSNAGDSRISSGV 118
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
KLEN+SKSYKG TVLK+V+WEVKKGEKVGLVGVNGAGKTTQ+RIIAG EEPDSGNV+KAK
Sbjct: 119 KLENVSKSYKGATVLKNVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEEPDSGNVMKAK 178
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+NMKIAFLSQEFEVS+SRTVREEF+SAFKEEMEIA +LE+VQKALESAV+D+ LMGRLLD
Sbjct: 179 ANMKIAFLSQEFEVSLSRTVREEFLSAFKEEMEIATRLEKVQKALESAVEDLQLMGRLLD 238
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EFDLLQR+AQAV+LD +D KVSKL+PELGF+ +D DRLVASFS GWQMRMSLGKILLQ+P
Sbjct: 239 EFDLLQRRAQAVDLDEVDVKVSKLLPELGFSEEDSDRLVASFSGGWQMRMSLGKILLQEP 298
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVSRTYE
Sbjct: 299 DLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVSRTYE 358
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYSQYV+ KA WIE+Q AAWEKQQ+EIEQTKDLI+RLGAGANSGRASSAEKKLERLQE
Sbjct: 359 GNYSQYVMSKAEWIEAQNAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEA 418
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
+ +EKPFQRKQMKIRFPERG+SGR+VV +KNLEFG+ED+ LFN+ANL IERGEK AI+GP
Sbjct: 419 DLVEKPFQRKQMKIRFPERGQSGRTVVAVKNLEFGFEDKQLFNKANLIIERGEKIAILGP 478
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NGCGKSTLLKLIMGLEKP+GGEVLLGEHNVLPNYFEQNQAEALDL+KTVLETV E AEDW
Sbjct: 479 NGCGKSTLLKLIMGLEKPKGGEVLLGEHNVLPNYFEQNQAEALDLEKTVLETVEEVAEDW 538
Query: 519 RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
RIDDIKGLLGRCNFK +MLDRKVSLLSGGEK
Sbjct: 539 RIDDIKGLLGRCNFKTEMLDRKVSLLSGGEK 569
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356509032|ref|XP_003523256.1| PREDICTED: ABC transporter F family member 5-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2165), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 424/542 (78%), Positives = 471/542 (86%), Gaps = 13/542 (2%)
Query: 11 RSSFFSTLQPRFTPFASAKS---FTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVE 67
+ S L PR + + +TN F+ RP ++A+ S+ + D+E
Sbjct: 22 KPSALRHLPPRVLSRTNTNTNLIYTN--RFSGPPRP------NSASSTGLSMITVEDDIE 73
Query: 68 SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVG 127
SLFS + E E + KQ + GAS ISSGVKLEN+ K+YKGVTVLKDV+WEVKKGEKVG
Sbjct: 74 SLFSETNSEEERR--VRKQPSIGASGISSGVKLENVGKAYKGVTVLKDVSWEVKKGEKVG 131
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
LVGVNGAGKTTQ+RIIAG EEPD GNV+KAK+NMKIAFL+QEFEV+ SRTVREEFM+AFK
Sbjct: 132 LVGVNGAGKTTQMRIIAGLEEPDFGNVVKAKANMKIAFLNQEFEVAPSRTVREEFMNAFK 191
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEME+AGKLE+VQKALE AV+D++LMGRLLDEFDLLQR+AQ VNLD +DAK+SKLMPELG
Sbjct: 192 EEMEVAGKLEKVQKALEGAVNDLELMGRLLDEFDLLQRRAQNVNLDEVDAKISKLMPELG 251
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRM LGKILLQ+PDLLLLDEPTNHLDLDTIEWLE YL +QDV
Sbjct: 252 FAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEDYLNQQDV 311
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVET+MGVSRT+EGNYSQYV+ KAAWIE+QYAAWEKQQ+EIE
Sbjct: 312 PMVIISHDRAFLDQLCTKIVETDMGVSRTFEGNYSQYVISKAAWIEAQYAAWEKQQKEIE 371
Query: 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI 427
QT+DLI+RLGAGANSGRASSAEKKLERLQEEE +EKPF+RKQMKIRFPERGRSGRSVV I
Sbjct: 372 QTRDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVAI 431
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
NLEFG+ED+ LF +ANLTIERGEK AIIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHN
Sbjct: 432 NNLEFGFEDKTLFKKANLTIERGEKIAIIGPNGCGKSTLLKLIMGLEKPTGGEVLLGEHN 491
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAEALDL+KTVLETV EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 492 VLPNYFEQNQAEALDLEKTVLETVEEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 551
Query: 548 EK 549
EK
Sbjct: 552 EK 553
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811095|ref|XP_002873431.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] gi|297319268|gb|EFH49690.1| hypothetical protein ARALYDRAFT_487818 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 425/554 (76%), Positives = 479/554 (86%), Gaps = 24/554 (4%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFT---NSLNFTKKQRPRITCQVSAATVE 55
M +TT + NLRS+FF T P FT +S++ +++ P I Q SA +
Sbjct: 1 MGLTTNLHSLNLRSAFFFT-----NPLPCHTLFTFKLSSVSNPRREFPNIIAQASATS-- 53
Query: 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKD 115
+ S+++SLFS+ ++K KQSN GASSISSGV+LENISKSY+GVTVLKD
Sbjct: 54 ------SNSELDSLFST------DRKLIGKQSNNGASSISSGVRLENISKSYEGVTVLKD 101
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175
VTWEVKKGEKVGL+GVNGAGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM
Sbjct: 102 VTWEVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMG 161
Query: 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235
+TV+EEFMSAFKEEME+A KLER+QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++
Sbjct: 162 KTVKEEFMSAFKEEMEVARKLERLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSI 221
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
DAK+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKILLQ+PDLLLLDEPTNHLDLDTI
Sbjct: 222 DAKISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTI 281
Query: 296 EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQ 355
EWLEGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA W+E+Q
Sbjct: 282 EWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWVEAQ 341
Query: 356 YAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415
YA+WEKQQ+EIE TKDLI+RL GANSGRASSAEKKLE+LQEEEQIEKPFQRKQMKIRF
Sbjct: 342 YASWEKQQKEIEATKDLISRLSGGANSGRASSAEKKLEKLQEEEQIEKPFQRKQMKIRFL 401
Query: 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475
E G SGRSVVT+KNL FG+ED++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEK
Sbjct: 402 ECGLSGRSVVTVKNLGFGFEDKILFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEK 461
Query: 476 PRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD 535
P GEV+LGEHNVLPNYFEQNQAEALDLDKTV+ETV EAA DWRIDDIK LLGRCNFKAD
Sbjct: 462 PMRGEVILGEHNVLPNYFEQNQAEALDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKAD 521
Query: 536 MLDRKVSLLSGGEK 549
MLDR+VSLLSGGEK
Sbjct: 522 MLDRRVSLLSGGEK 535
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225438549|ref|XP_002279804.1| PREDICTED: ABC transporter F family member 5 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/575 (76%), Positives = 488/575 (84%), Gaps = 26/575 (4%)
Query: 1 MDVTTT--TTNLRSSFFST----------LQPRFTPF-------ASAKSFTNSLNFTK-- 39
MD+ T +LRSSFF+ L+P F P AS S T S + K
Sbjct: 1 MDLATKLQCIDLRSSFFTGSALLDARKTGLRPHFRPHTRSIPISASTHSITGSNSSIKTS 60
Query: 40 ---KQRPRITCQVSAATVEKKSIAKAQS--DVESLFSSSADEFENKKYSNKQSNTGASSI 94
R R + S A S+A+ S D+ESLFS+++ + +K NKQSN+GASSI
Sbjct: 61 ALFNSRTRSSMVSSKAVAMDTSVAETMSREDIESLFSNNSVDEAYQKRVNKQSNSGASSI 120
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SSGV+LEN+SK YKGVTVLKDV+WEVKKGEKVGLVGVNGAGKTTQLRII G EEPDSGNV
Sbjct: 121 SSGVRLENVSKGYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQLRIITGLEEPDSGNV 180
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
IKAK NMKIAFLSQEFEVS+SRTV+EEFMSAFKEEMEIA +LE+VQKA+ES+VDD++LMG
Sbjct: 181 IKAKMNMKIAFLSQEFEVSLSRTVKEEFMSAFKEEMEIAARLEKVQKAIESSVDDLELMG 240
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
RLLDE DLLQR+AQAV+LD +DAK+SKLMPELGF +D DRLVASFSSGWQMRMSLGKIL
Sbjct: 241 RLLDENDLLQRRAQAVDLDEVDAKISKLMPELGFAPEDSDRLVASFSSGWQMRMSLGKIL 300
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
LQ+PDLLLLDEPTNHLDLDTIEWLEGYL KQDVPMVIISHDRAFLDQLCTKIVET+MGVS
Sbjct: 301 LQEPDLLLLDEPTNHLDLDTIEWLEGYLNKQDVPMVIISHDRAFLDQLCTKIVETDMGVS 360
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
RTYEGNYSQYV+ KA WIE+QYAAWEKQQ+EIE T+DLI+RL GANSGRAS+AEKKLE+
Sbjct: 361 RTYEGNYSQYVIAKATWIEAQYAAWEKQQKEIEHTRDLISRLSGGANSGRASTAEKKLEK 420
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
LQ+EEQI+KPFQ KQMKIRFPERG SGRSV+ IKNLEFGY D++LF +ANLTIERGEK A
Sbjct: 421 LQDEEQIDKPFQHKQMKIRFPERGVSGRSVLAIKNLEFGYGDKVLFKKANLTIERGEKIA 480
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
IIGPNGCGKSTLLKLIMGLEKP GGEVLLGEHNVLPNYFEQNQAEALDLDKTVL+TV +
Sbjct: 481 IIGPNGCGKSTLLKLIMGLEKPIGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLQTVEDV 540
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
AE+W+IDDIKGLLGRCNFKADMLDRKVSLLSGGEK
Sbjct: 541 AENWKIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 575
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 555 | ||||||
| TAIR|locus:2177689 | 692 | ABCF5 "ATP-binding cassette F5 | 0.969 | 0.777 | 0.699 | 1.7e-194 | |
| TAIR|locus:2178168 | 678 | ABCF2 "ATP-binding cassette F2 | 0.960 | 0.786 | 0.675 | 2.2e-185 | |
| TIGR_CMR|GSU_0922 | 645 | GSU_0922 "ABC transporter, ATP | 0.798 | 0.686 | 0.316 | 2.1e-61 | |
| TIGR_CMR|GSU_2093 | 545 | GSU_2093 "ABC transporter, ATP | 0.805 | 0.820 | 0.314 | 1.6e-54 | |
| TIGR_CMR|DET_0224 | 663 | DET_0224 "ABC transporter, ATP | 0.805 | 0.674 | 0.296 | 8e-53 | |
| UNIPROTKB|Q81VE6 | 640 | BA_0262 "ABC transporter, ATP- | 0.814 | 0.706 | 0.297 | 9.2e-52 | |
| TIGR_CMR|BA_0262 | 640 | BA_0262 "ABC transporter, ATP- | 0.814 | 0.706 | 0.297 | 9.2e-52 | |
| TIGR_CMR|BA_0228 | 626 | BA_0228 "ABC transporter, ATP- | 0.807 | 0.715 | 0.296 | 3.2e-49 | |
| UNIPROTKB|Q97RN3 | 513 | SP_0770 "ABC transporter, ATP- | 0.792 | 0.857 | 0.299 | 3.1e-44 | |
| UNIPROTKB|Q81Z88 | 514 | BAS0370 "ABC transporter, ATP- | 0.794 | 0.857 | 0.287 | 7.3e-43 |
| TAIR|locus:2177689 ABCF5 "ATP-binding cassette F5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1884 (668.3 bits), Expect = 1.7e-194, P = 1.7e-194
Identities = 379/542 (69%), Positives = 427/542 (78%)
Query: 9 NLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVES 68
+LRS+FF+ L R +P S +S++ ++ I QVS ++E S+ + Q ++ES
Sbjct: 11 DLRSTFFTGL--RTSPIPSNFIKISSISNPRRDISTIRAQVSTISLET-SVKQRQDEIES 67
Query: 69 LFSSSADEFEN-KKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEXXXXXXXX 127
LFS + ++ +K + K S GAS ISSGVKLENI KSYKGVTVLKDVTWE
Sbjct: 68 LFSKQPSQQDSDRKRNGKSSKNGASGISSGVKLENIRKSYKGVTVLKDVTWEVKRGEKVG 127
Query: 128 XXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187
AGKTTQLRII GQEEPDSGNVIKAK NMK+AFLSQEFEVSMS+TVREEFM+AFK
Sbjct: 128 LVGVNGAGKTTQLRIITGQEEPDSGNVIKAKPNMKVAFLSQEFEVSMSKTVREEFMTAFK 187
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
EEMEI KLE+VQKA+E +VDD+DLMGRLLDEFDLLQR+AQAVNLD++DAK+SKLMPELG
Sbjct: 188 EEMEITEKLEKVQKAIEGSVDDLDLMGRLLDEFDLLQRRAQAVNLDSVDAKISKLMPELG 247
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDV 307
F +D DRLVASFS GWQMRMSLGKI EPTNHLDLDTIEWLEGYL KQDV
Sbjct: 248 FAPEDADRLVASFSGGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLQKQDV 307
Query: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367
PMVIISHDRAFLDQLCTKIVETEMGVSRT+EGNYSQYV+ KA WIE+Q AAWEKQQ++I+
Sbjct: 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQYVISKAEWIETQNAAWEKQQKDID 367
Query: 368 QTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERGRSGRSVVTI 427
TKDLI RL PFQRKQMKIRFPERG SGRSVV +
Sbjct: 368 STKDLIARLGAGANSGRASTAEKKLEKLQEQELIEKPFQRKQMKIRFPERGTSGRSVVNV 427
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
KN++FG+ED++LF +ANL+IERGEK AI+GPNGCGKSTLLKLIMGLEKP GEV+LGEHN
Sbjct: 428 KNIDFGFEDKMLFKKANLSIERGEKIAILGPNGCGKSTLLKLIMGLEKPVKGEVILGEHN 487
Query: 488 VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
VLPNYFEQNQAE LDLDKTVLETV EAAEDWR DDIKGLLGRCNFKADMLDRKVSLLSGG
Sbjct: 488 VLPNYFEQNQAEVLDLDKTVLETVCEAAEDWRSDDIKGLLGRCNFKADMLDRKVSLLSGG 547
Query: 548 EK 549
EK
Sbjct: 548 EK 549
|
|
| TAIR|locus:2178168 ABCF2 "ATP-binding cassette F2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1798 (638.0 bits), Expect = 2.2e-185, P = 2.2e-185
Identities = 372/551 (67%), Positives = 423/551 (76%)
Query: 1 MDVTTT--TTNLRSSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKS 58
M +TT + NLRS+FF T + K +S++ ++ P I VSAA+
Sbjct: 1 MVLTTNLYSLNLRSTFFFTNTITCPTLFTFK--LSSVSNPRRVFPNIRAHVSAAS----- 53
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTW 118
+ S++ESL S+ ++K +KQSN GASSISSGV+LENISKSY+G+TVLKDVTW
Sbjct: 54 ---SNSELESLLST------DRKLISKQSNNGASSISSGVRLENISKSYEGITVLKDVTW 104
Query: 119 EXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E AGKTTQLRII GQEEPDSGNVI AK N+K+AFLSQEFEVSM +TV
Sbjct: 105 EVKKGEKVGLIGVNGAGKTTQLRIITGQEEPDSGNVIWAKPNLKVAFLSQEFEVSMGKTV 164
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+EEFM FKEEMEIA KLE +QKA+E AVDD++LMG+LLDEFDLLQR+AQ V+LD++ AK
Sbjct: 165 KEEFMCTFKEEMEIARKLENLQKAIEEAVDDLELMGKLLDEFDLLQRRAQEVDLDSIHAK 224
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXXXXXXXEPTNHLDLDTIEWL 298
+SKLM ELGF ++D DRLVASFSSGWQMRMSLGKI EPTNHLDLDTIEWL
Sbjct: 225 ISKLMSELGFVSEDADRLVASFSSGWQMRMSLGKILLQNPDLLLLDEPTNHLDLDTIEWL 284
Query: 299 EGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAA 358
EGYL KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT++GNYSQYV+ KA +E+QYAA
Sbjct: 285 EGYLIKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFDGNYSQYVISKAELVEAQYAA 344
Query: 359 WEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXXXXXXPFQRKQMKIRFPERG 418
WEKQQ+EIE TKDLI+RL PFQRKQMKIRFPE G
Sbjct: 345 WEKQQKEIEATKDLISRLSAGANSGRASSAEKKLEKLQEEELIEKPFQRKQMKIRFPECG 404
Query: 419 RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGRSVVT+KNL FG++D++LFN+ANL IERGEK AIIGPNGCGKSTLLKLIMGLEKP
Sbjct: 405 LSGRSVVTVKNLVFGFDDKMLFNKANLAIERGEKVAIIGPNGCGKSTLLKLIMGLEKPMR 464
Query: 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
GEV+LGEHNVLPNYFEQNQAEA DLDKTV+ETV EAA DWRIDDIK LLGRCNFKADMLD
Sbjct: 465 GEVILGEHNVLPNYFEQNQAEAQDLDKTVIETVVEAAVDWRIDDIKALLGRCNFKADMLD 524
Query: 539 RKVSLLSGGEK 549
RKVSLLSGGEK
Sbjct: 525 RKVSLLSGGEK 535
|
|
| TIGR_CMR|GSU_0922 GSU_0922 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
Identities = 143/452 (31%), Positives = 238/452 (52%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK + G ++ ++ W AGK+T +RI+AG E SG +I A+
Sbjct: 4 LRKLSKDFAGTSLFAEIDWHLKKGERVGLVGENGAGKSTLMRIVAGLVEQTSGELIFARG 63
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+ +L Q+ V+ R + E M+A ++ + +L + LE+ D G L+
Sbjct: 64 -ATVGYLPQDGIVTRGRGLLAEAMTALEDLQSLERELHELTSRLENISHDAPEHGECLER 122
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ LQ + + +++A+ +++ LGFT D R FS GWQMR++L K+
Sbjct: 123 YGRLQEEFRLRGGYSMEAEACRVLDGLGFTTGDRQRDCGEFSGGWQMRIALAKLLLKKPN 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLD++ WLEGYL + ++++SHDR F+DQ+C +I E G Y
Sbjct: 183 VLLLDEPTNHLDIEARNWLEGYLQEYPHSVILVSHDRFFMDQVCHRITEVWNGTLTDYHC 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXX 399
+YS+Y+ + + + A +Q E+ + +D INR
Sbjct: 243 SYSRYLTAREERVAALLEAKRRQDEEVAKIEDFINRFRYKADKAALVQSRVKQLEKIERI 302
Query: 400 XXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPN 459
P +RK+++ RFP+ +SGR V+ +K + Y ++ + +LT+E+GE+ A++G N
Sbjct: 303 VL--PPERKKIRFRFPDPPKSGRIVLELKGVTKAYGSHVVLDGIDLTVEKGERIALVGHN 360
Query: 460 GCGKSTLLKLIMGLEKP-RGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV-AEAAED 517
G GKSTL+ ++ G KP +GGE + G HNV+ +YF Q+QA+ LD KT E + A+A D
Sbjct: 361 GAGKSTLMGVLAG--KPFQGGERIAG-HNVVADYFAQDQAQVLDGAKTAHEELLADAPFD 417
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ ++ +LG F D + ++V +LSGGE+
Sbjct: 418 M-VPQLRDILGAFLFTGDDIHKRVEVLSGGER 448
|
|
| TIGR_CMR|GSU_2093 GSU_2093 "ABC transporter, ATP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 563 (203.2 bits), Expect = 1.6e-54, P = 1.6e-54
Identities = 144/458 (31%), Positives = 221/458 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L NI+K + + +D +++ AGKTT RII G+EE D+G + A
Sbjct: 2 IHLSNITKQHGNQLLFRDASFQILPGSRTGLVGPNGAGKTTIFRIITGEEEVDAGEITCA 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K I + SQ+ RT EE M+ E + +A +L+ ++ A+ +DD D M LL
Sbjct: 62 KRT-SIGYFSQDVGEMAGRTALEEVMAVSAETVRLAAELKEMEAAMAEPMDD-DAMAALL 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+ + + + LD + ++ LG D D V SFS GW+MR++L I
Sbjct: 120 ERYGTAMEEFEHRGGYDLDTRARTILTGLGIGPDRYDHPVESFSGGWKMRIALAGILTLQ 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYL-GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
EPTNHLD+++I WLE +L G+ +++ SHDR F++++ T+I+E T
Sbjct: 180 PDVLLLDEPTNHLDVESIIWLEEWLAGEFTGALLMTSHDRDFMNRIVTRIIEVADKTVTT 239
Query: 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXX 396
Y GNY Y E+ E A+ ++QQ + + ++ I R
Sbjct: 240 YGGNYDFYERERDIRREQLLASHKRQQEMLAKEEEFIARFAARASHAAQVQSRVKKLEKI 299
Query: 397 XXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----DRLLFNRANLTIERGE 451
P + + ++ F + RSG V L + ++ +F+ + I R
Sbjct: 300 DRIEI--PPEERVIRFEFNDPPRSGDDVAVFNGLAKSWSLPGGGEKSVFSGVSGVIRRQN 357
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETV 511
K A++G NG GKST LK++ G +P G V LG NV YF Q+ E LD KTV ETV
Sbjct: 358 KIAVVGVNGAGKSTFLKVLAGRTEPTDGSVALGA-NVSLGYFSQHAMELLDPKKTVFETV 416
Query: 512 AEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+A I I+ LLG F D +D+++ LSGGEK
Sbjct: 417 QDAMPLATIGVIRNLLGAFLFSGDAVDKRIENLSGGEK 454
|
|
| TIGR_CMR|DET_0224 DET_0224 "ABC transporter, ATP-binding protein" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
Identities = 134/452 (29%), Positives = 212/452 (46%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++N+SKS+ ++ V +GKTT +IAG+ E D G +I
Sbjct: 2 LNIQNLSKSFGVRSLYTGVNLNIGARDRLALLGPNGSGKTTLFEMIAGRLEADEGKIILR 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ + +L Q+ + S + + + SA ++ K+ +Q L D + RL+
Sbjct: 62 RGTT-VGYLEQDIKPSSKQPLLKAVSSASDRLSSLSHKISLLQGELAEEKDGSE-NNRLM 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXX 277
+E LQ +A+ + + ++ LGF D DR + FS GW MR L K+
Sbjct: 120 NELGELQHSFEALGGYNAEQEAKLILAGLGFKPVDFDRPLHEFSGGWLMRAELAKLLFLS 179
Query: 278 XXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
EPTNHLDL++ W E YL + ++ SHDRAFL+ + TKI+ E +R Y
Sbjct: 180 PDILILDEPTNHLDLESTRWFESYLKQYSGSVLFTSHDRAFLNSIATKILSLEDQKARLY 239
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXX 397
GNY Y+ E+ + + +QQ I++ I R
Sbjct: 240 SGNYDSYLRERELRLNQLESQARRQQELIDKETKFIERFRYKATKASQVQSRIKKLDKLS 299
Query: 398 XXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
P Q K++ FPE RSG V+ ++NL Y D +++ L + RG+K A++G
Sbjct: 300 AVAI--PRQTKKIHFNFPEPERSGHDVIKLRNLTKSYGDLVIYQGLELVLARGDKAALVG 357
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+TLLK++ G+ G LG NV YF Q E+L ++E + D
Sbjct: 358 PNGAGKTTLLKILAGVMPFDSGYRNLGA-NVNTAYFAQYYVESLSPANNLIEELETILPD 416
Query: 518 WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++G+LG F D + +++S+LSGGEK
Sbjct: 417 APEQQLRGMLGAFLFSGDDVKKRISVLSGGEK 448
|
|
| UNIPROTKB|Q81VE6 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 137/460 (29%), Positives = 222/460 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554
+I+ +LG F D + + VS LSGG+K L
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLAL 458
|
|
| TIGR_CMR|BA_0262 BA_0262 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 9.2e-52, P = 9.2e-52
Identities = 137/460 (29%), Positives = 222/460 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +SK Y T+L ++ E AGK+T L+IIAG+ D G +IK
Sbjct: 4 LQVNALSKLYGAETILANIKLEVQTKDRIALVGRNGAGKSTLLKIIAGELSHDGGEIIKP 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
K ++ + +L+Q + S T+ +E ++ F ++ KL R+++ + E + R
Sbjct: 64 K-DVSMGYLAQNTGLETSLTIWDEMLTVFTHLQQMETKLRRLEQEMGKEENFSNEATYER 122
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXX 275
LL ++D LQ + +A + ++ LGF + +++ S G + R++LGK+
Sbjct: 123 LLADYDQLQLDYKDQGGYQYEADIRSILSGLGFPVETHQTTISTLSGGQKTRLALGKLLL 182
Query: 276 XXXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
EPTNHLD++T+ WLE YL ++I+SHDR FLD+L T++ E SR
Sbjct: 183 TKPDLLILDEPTNHLDIETLTWLEQYLQGYPGAILIVSHDRYFLDKLVTQVYEISNKESR 242
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
+ GNYS+Y+ K+A E + +EKQQ EI + +D + +
Sbjct: 243 RFVGNYSKYLDLKSALYEQEMKRYEKQQDEIAKLEDFVQK--NIARASTTKRAQSRRKQL 300
Query: 396 XXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTA 454
P K F +SG V+ +K+ GY+ + + + RG+ A
Sbjct: 301 DRMELLTRPLGDSKSASFHFDIEKQSGNDVLQVKDATIGYDKDPIIEHVTMRLTRGDSVA 360
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
++GPNG GKSTLLK I+ G+V G NV Y++Q QA L K VL + +
Sbjct: 361 LVGPNGIGKSTLLKSIVNKLPLLHGDVSFGS-NVSVGYYDQEQAN-LTSSKRVLNELWDE 418
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554
+I+ +LG F D + + VS LSGG+K L
Sbjct: 419 YPLQPEKEIRTILGNFLFTGDDVLKPVSSLSGGQKARLAL 458
|
|
| TIGR_CMR|BA_0228 BA_0228 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 513 (185.6 bits), Expect = 3.2e-49, P = 3.2e-49
Identities = 137/462 (29%), Positives = 230/462 (49%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ N++KS+ G + ++++ E +GKTT +++ G E D+G I K
Sbjct: 6 VNNVTKSFGGNIIFENISLEIKNGERVGLVGRNGSGKTTIFQLLTGMESLDAG-AIHMKK 64
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
+I ++Q + S TV E SAFK E E+ ++ ++K + + ++ +L++
Sbjct: 65 GTRIGHVAQIPKFDESMTVYEVLSSAFKIEKELEREMRTLEKDMAEE-QESSVLQKLMER 123
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ ++Q K + ++A + K+ L T + R S G Q ++SL +
Sbjct: 124 YGIIQEKFAFLGGYEIEANIMKVANGLQVT-ELFPRSFLELSGGEQTKVSLAYMLLQKPD 182
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTNHLDL +EWLE +L + + +++ISHDR FLD++ TKI + E G Y
Sbjct: 183 LLLLDEPTNHLDLFAVEWLEQFLKEYNGTVMVISHDRYFLDEVVTKIFDLEDGEIHVYHT 242
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXX------XXXXXXXXX 393
NYS++V EK + ++ A+++QQ++I++ K+ I RL
Sbjct: 243 NYSRFVEEKEERLLQEFQAYQEQQKKIKKMKEAIKRLREWANQANPPNEGLHKRARSMER 302
Query: 394 XXXXXXXXXXPF-QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
P +RKQ+ ++F + RSG+ VV IK + G+ D LFN NL + E+
Sbjct: 303 ALERMQKLKKPILERKQIGLQFEGQDRSGKDVVVIKEVSKGFADHPLFNEVNLHVRFQER 362
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AI+G NG GK+TLLKL++ +P GE+ +G +V Y Q+ + D VLE
Sbjct: 363 AAIVGRNGTGKTTLLKLLLEEIEPDAGEIRIGS-SVKIGYLSQHAYGNMKSD--VLEAFR 419
Query: 513 EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554
E + + +L + F + +KV+ LSGGEK+ L
Sbjct: 420 EYVAVTE-GEARHILAKFLFYGPAVFKKVTQLSGGEKMRLRL 460
|
|
| UNIPROTKB|Q97RN3 SP_0770 "ABC transporter, ATP-binding protein" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
Identities = 136/454 (29%), Positives = 218/454 (48%)
Query: 98 VKLENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKA 157
++++N+S + + +DV++ GK+T + I+ G+ PD G V +
Sbjct: 4 LEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKVEWS 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K + +L Q ++ ++VR+ +AF E + ++ + ++ A D D+ L+
Sbjct: 64 KY-VTAGYLDQHSVLAERQSVRDVLRTAFDELFKAEARINDLY--MKMAEDGADV-DALM 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKIXXX 276
+E LQ + ++ + TLDAK+ ++ LG D G D V S S G + ++ L K+
Sbjct: 120 EEVGELQDRLESRDFYTLDAKIDEVARALG-VMDFGMDTDVTSLSGGQRTKVLLAKLLLE 178
Query: 277 XXXXXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
EPTN+LD + I+WL+ YL + V+ISHD FL+ + + E
Sbjct: 179 KPDILLLDEPTNYLDAEHIDWLKRYLQNYENAFVLISHDIPFLNDVINIVYHVENQQLTR 238
Query: 337 YEGNYSQYVLEKAAWIESQY-AAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXX 395
Y G+Y Q+ E A +SQ AA+E+QQ+EI KD + R
Sbjct: 239 YSGDYYQFQ-EVYAMKKSQLEAAYERQQKEIADLKDFVARNKARVATRNMAMSRQKKLDK 297
Query: 396 XXXXXXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAI 455
+ + P R GR + KNL+ GY DR L NLT ER +K AI
Sbjct: 298 MDIIELQSEKPKPSFDFK-PAR-TPGRFIFQAKNLQIGY-DRPLTKPLNLTFERNQKVAI 354
Query: 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA 515
IG NG GK+TLLK ++G+ P GEV G++ L YFEQ + E + +T LE V A
Sbjct: 355 IGANGIGKTTLLKSLLGIISPIAGEVERGDYLEL-GYFEQ-EVEGGNR-QTPLEAVWNAF 411
Query: 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+++ L RC ++ ++ +LSGGE+
Sbjct: 412 PALNQAEVRAALARCGLTTKHIESQIQVLSGGEQ 445
|
|
| UNIPROTKB|Q81Z88 BAS0370 "ABC transporter, ATP-binding protein" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 453 (164.5 bits), Expect = 7.3e-43, P = 7.3e-43
Identities = 131/455 (28%), Positives = 208/455 (45%)
Query: 100 LENISKSYKGVTVLKDVTWEXXXXXXXXXXXXXXAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+EN+S SY T+L + + GK+T LRI+ G+ D GN I+
Sbjct: 6 VENLSHSYGEKTILYNACFRLLKGEHVGVVGGNGIGKSTLLRILTGELIHDDGN-IEWFP 64
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
++KI FL Q ++ T+ SAF + I ++ ++ + + A + + +LL +
Sbjct: 65 HVKIGFLQQHMDLQEGMTIEGYLQSAFADLYAIECEMLKIAEEMNGAGE----VEKLLVK 120
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIXXXXXX 279
+ LQ ++ N + A+V ++ LG + V+ S G + ++ LGK+
Sbjct: 121 YGELQTILESSNFYHIHAEVEEVAIGLGLFEIGLKKDVSKLSGGQRTKLLLGKLLLEKAD 180
Query: 280 XXXXXEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
EPTN+LD IEWL+ YL + VIISHD FL+ + I E G + Y G
Sbjct: 181 VLLLDEPTNYLDTAHIEWLQSYLRLYEKAYVIISHDELFLNSITNVIFHLEGGKVKRYVG 240
Query: 340 NYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLXXXXXXXXXXXXXXXXXXXXXXX 399
NY ++V + +A+ KQQ+EI Q + I +
Sbjct: 241 NYEKFVQSYQVQKKQLQSAYVKQQKEISQLETFIQK--NKIRKAKQAKSREKVLEKMQRI 298
Query: 400 XXXXPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPN 459
P R + E S ++ + L GY D L NL +++GEK AIIG N
Sbjct: 299 EKIHPVPRSRFDFNVYEEPVS--RILQAEKLRIGYSDPLC-PELNLQVKKGEKIAIIGHN 355
Query: 460 GCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR 519
G GK+T+LK ++G KP G + +GE V P YF Q + + + T LE V D
Sbjct: 356 GIGKTTMLKTLLGQIKPLSGSISVGER-VNPAYFAQEEFAS---ETTPLEKVWAERPDMT 411
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554
+++ L +C K + + + + LLSGGE+ L
Sbjct: 412 KKEVRQALAKCGLKEEHVLKPIRLLSGGEQTKVRL 446
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| Q9LV93 | AB5F_ARATH | No assigned EC number | 0.7859 | 0.9693 | 0.7774 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 555 | |||
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-146 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-83 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-81 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-78 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 7e-68 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-60 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-52 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-46 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-31 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-30 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 2e-29 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-28 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 4e-27 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 5e-27 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-27 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 2e-25 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 8e-25 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 4e-24 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-23 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-23 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 6e-23 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-23 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 8e-23 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 9e-23 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-22 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 3e-22 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-22 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 6e-22 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-21 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-21 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 4e-21 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-21 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 6e-21 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 9e-21 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 9e-21 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-20 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 1e-20 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-20 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-20 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-20 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-20 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 5e-20 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 5e-20 | |
| pfam12848 | 85 | pfam12848, ABC_tran_2, ABC transporter | 5e-20 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-20 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-20 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 1e-19 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-19 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-19 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-19 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-19 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-19 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 2e-19 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-19 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 4e-19 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-19 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 4e-19 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 6e-19 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 9e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-18 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-18 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 2e-18 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 2e-18 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-18 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-18 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 7e-18 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 1e-17 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 1e-17 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-17 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 3e-17 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-17 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-17 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-17 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 4e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-17 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 6e-17 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 6e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-17 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-17 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 8e-17 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 9e-17 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 9e-17 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-16 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 1e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-16 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-16 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-16 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 3e-16 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 3e-16 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-16 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-16 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-16 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-16 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 6e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 6e-16 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 6e-16 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 7e-16 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-16 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-15 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 2e-15 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 3e-15 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-15 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-15 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-15 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 6e-15 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 6e-15 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 7e-15 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 7e-15 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-15 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 8e-15 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-14 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 1e-14 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 1e-14 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 1e-14 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-14 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-14 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-14 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-14 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-14 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 2e-14 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-14 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-14 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-14 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-14 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-14 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 7e-14 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 7e-14 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 7e-14 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 1e-13 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 1e-13 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-13 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-13 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-13 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-13 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-13 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-13 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-13 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-13 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 3e-13 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 3e-13 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-13 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-13 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-13 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-13 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 6e-13 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 7e-13 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 8e-13 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-13 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 1e-12 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-12 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-12 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 1e-12 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-12 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-12 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-12 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-12 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-12 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-12 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 3e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-12 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-12 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 3e-12 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 4e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-12 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 4e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 4e-12 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-12 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 5e-12 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 6e-12 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-12 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 7e-12 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 7e-12 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-12 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 9e-12 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 1e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 1e-11 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-11 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-11 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-11 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 2e-11 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 2e-11 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 2e-11 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-11 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-11 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 2e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 3e-11 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-11 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 3e-11 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-11 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 3e-11 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 3e-11 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 5e-11 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 5e-11 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-11 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 6e-11 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 9e-11 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-10 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 1e-10 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-10 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 1e-10 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 1e-10 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 2e-10 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 2e-10 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 2e-10 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-10 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-10 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 2e-10 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-10 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-10 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 3e-10 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 3e-10 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 3e-10 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-10 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 3e-10 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-10 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 4e-10 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 5e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 5e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 5e-10 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 5e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-10 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 5e-10 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 5e-10 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 6e-10 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 6e-10 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 6e-10 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 7e-10 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 7e-10 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 7e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-10 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 8e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 8e-10 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-10 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 9e-10 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 1e-09 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 1e-09 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-09 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-09 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-09 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-09 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-09 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-09 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-09 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-09 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-09 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 4e-09 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 5e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 5e-09 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 6e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 6e-09 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-09 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 7e-09 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 7e-09 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 9e-09 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 9e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-08 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-08 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-08 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 1e-08 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 1e-08 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-08 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-08 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 2e-08 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-08 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-08 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 2e-08 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-08 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 3e-08 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-08 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 3e-08 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-08 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-08 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 3e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 4e-08 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-08 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-08 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 4e-08 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 4e-08 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 5e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 5e-08 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 6e-08 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 6e-08 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 7e-08 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-08 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 7e-08 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 8e-08 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-08 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 9e-08 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 9e-08 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-08 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 9e-08 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 9e-08 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 1e-07 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-07 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-07 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-07 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-07 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 1e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-07 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-07 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-07 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-07 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 2e-07 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-07 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-07 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-07 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-07 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 2e-07 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-07 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-07 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-07 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-07 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-07 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-07 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 3e-07 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 3e-07 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 3e-07 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 3e-07 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 3e-07 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-07 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-07 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 5e-07 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-07 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 7e-07 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 7e-07 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 7e-07 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 8e-07 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-07 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-07 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-07 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-06 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 1e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 1e-06 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-06 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-06 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 1e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-06 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 1e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-06 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-06 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-06 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-06 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-06 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 2e-06 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 2e-06 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 2e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 2e-06 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-06 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-06 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 2e-06 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-06 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-06 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-06 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-06 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 3e-06 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 3e-06 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 3e-06 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-06 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 3e-06 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-06 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-06 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 4e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 4e-06 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 5e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 5e-06 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 5e-06 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 6e-06 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 6e-06 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 6e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 7e-06 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 8e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 8e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 8e-06 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-06 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-06 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-05 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-05 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 1e-05 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 1e-05 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-05 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 1e-05 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 1e-05 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 1e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-05 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-05 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-05 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-05 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 2e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 2e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-05 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-05 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-05 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 3e-05 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 3e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 3e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-05 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 4e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 4e-05 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-05 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 5e-05 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-05 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 5e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 6e-05 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 6e-05 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-05 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 6e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-05 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 7e-05 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 7e-05 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-05 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-05 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 8e-05 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 8e-05 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 9e-05 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 1e-04 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 1e-04 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-04 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-04 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-04 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 2e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 2e-04 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-04 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 2e-04 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 2e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-04 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 2e-04 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 2e-04 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 2e-04 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 3e-04 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-04 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 3e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 3e-04 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-04 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 4e-04 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-04 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 4e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-04 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-04 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 5e-04 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 5e-04 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 5e-04 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 5e-04 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 6e-04 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 6e-04 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 7e-04 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 7e-04 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 7e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 7e-04 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 7e-04 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 7e-04 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 8e-04 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 0.001 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 0.001 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 0.001 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 0.001 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 0.001 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.001 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.001 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 0.001 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 0.001 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 0.001 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 0.001 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 0.001 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.001 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.001 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 0.002 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 0.002 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 0.002 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 0.002 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 0.002 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.002 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 0.002 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.002 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 0.002 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.002 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.003 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 0.003 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.003 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 0.003 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.003 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 0.003 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 0.003 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 0.003 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 0.003 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.003 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.003 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 0.003 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 0.003 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 0.003 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 0.004 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 0.004 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 0.004 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 0.004 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.004 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 431 bits (1110), Expect = e-146
Identities = 186/456 (40%), Positives = 279/456 (61%), Gaps = 18/456 (3%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
LEN+S +Y +L++V+ + GE++GLVG NGAGK+T L+I+AG+ EPDSG V + K
Sbjct: 5 TLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK 64
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ +LSQE + +TV + + F E E+ +LE L A D +L+ L
Sbjct: 65 -GLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL--ADPDDELLAELEA 121
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ L TL+A+ + + LGF +D R V+S S GW+ R++L + LL++P
Sbjct: 122 LLEELDG-------WTLEARAEEALLGLGFPDED--RPVSSLSGGWRRRVALARALLEEP 172
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
DLLLLDEPTNHLDL++IEWLE YL + ++++SHDR FLD + T I+E + G Y+
Sbjct: 173 DLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLTPYK 232
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRASSAEKKLERLQE 397
GNYS Y+ +KA + + AA+EKQQ+E+ + ++ I R A A+ + +A S K+LE+L+
Sbjct: 233 GNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEA 292
Query: 398 EEQIEKPFQR-KQMKIRF-PERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTA 454
E+P + K + RF P R G+ V+ +N+ GY+ RLL + I+RG++ A
Sbjct: 293 RLAEERPVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIA 352
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514
I+GPNG GKSTLLKL+ G P G V +GE V YF+Q++ E LD DKTVLE ++E
Sbjct: 353 IVGPNGAGKSTLLKLLAGELGPLSGTVKVGE-TVKIGYFDQHRDE-LDPDKTVLEELSEG 410
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKV 550
D +++ LGR F + ++ V +LSGGEK
Sbjct: 411 FPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKA 446
|
Length = 530 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 8e-83
Identities = 147/455 (32%), Positives = 238/455 (52%), Gaps = 21/455 (4%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+SK +LKD++ G K+G++G+NGAGK+T LRI+AG ++ +G A
Sbjct: 9 RVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-G 67
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+K+ +L QE ++ ++TVRE E + + + DMD LL E
Sbjct: 68 IKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMD---ALLAEQ 124
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
LQ A + LD K+ M L D D V S G + R++L ++LL PD+
Sbjct: 125 AELQEIIDAADAWDLDRKLEIAMDALRCPPWDAD--VTKLSGGERRRVALCRLLLSKPDM 182
Query: 281 LLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYE 338
LLLDEPTNHLD +++ WLE +L Q+ P +V ++HDR FLD + I+E + G +E
Sbjct: 183 LLLDEPTNHLDAESVAWLEQHL--QEYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWE 240
Query: 339 GNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
GNYS ++ +K +E + +Q+ +++ + + R A ++ + + E L +
Sbjct: 241 GNYSSWLEQKEKRLEQEEKEESARQKALKRELEWV-RSSPKARQAKSKARLARYEELLSQ 299
Query: 399 EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGP 458
E ++ + +I P R G V+ +NL G+ D+LL + + + G +IGP
Sbjct: 300 EFQKRN---ETAEIYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGP 356
Query: 459 NGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW 518
NG GKSTL ++I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ +
Sbjct: 357 NGAGKSTLFRMITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDII 414
Query: 519 RIDDI----KGLLGRCNFKADMLDRKVSLLSGGEK 549
++ + +GR NFK +KV LSGGE+
Sbjct: 415 QLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGER 449
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 5e-81
Identities = 145/443 (32%), Positives = 232/443 (52%), Gaps = 20/443 (4%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+LKD++ G K+G++G+NGAGK+T LRI+AG ++ G A +K+ +L QE +
Sbjct: 22 ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQ 80
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ +TVRE E + + A D D L E LQ A +
Sbjct: 81 LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFD---ALAAEQGELQEIIDAAD 137
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
LD+++ M L D V S G + R++L ++LL+ PD+LLLDEPTNHLD
Sbjct: 138 AWDLDSQLEIAMDALRCPPWDAK--VTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
Query: 292 LDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKA 349
+++ WLE +L D P +V ++HDR FLD + I+E + G +EGNYS ++ +KA
Sbjct: 196 AESVAWLEQFL--HDYPGTVVAVTHDRYFLDNVAGWILELDRGRGIPWEGNYSSWLEQKA 253
Query: 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409
+ + +Q+ +++ + + R A ++ + + E L EE ++ +
Sbjct: 254 KRLAQEEKQEAARQKALKRELEWV-RQSPKARQAKSKARLARYEELLSEEYQKRN---ET 309
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+I P R G V+ +NL + DRLL + + ++ G IIGPNG GKSTL K+
Sbjct: 310 NEIFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKM 369
Query: 470 IMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI----KG 525
I G E+P G + +GE V Y +Q++ +ALD +KTV E ++ + ++ + +
Sbjct: 370 ITGQEQPDSGTIKIGE-TVKLAYVDQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRA 427
Query: 526 LLGRCNFKADMLDRKVSLLSGGE 548
+GR NFK +KV +LSGGE
Sbjct: 428 YVGRFNFKGGDQQKKVGVLSGGE 450
|
Length = 556 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 1e-78
Identities = 151/462 (32%), Positives = 247/462 (53%), Gaps = 48/462 (10%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGE--KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
ENIS VK G + GL+G NG GK+T ++I+ G EP +GNV
Sbjct: 18 ENIS---------------VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLD- 61
Query: 159 SNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N ++ L Q+ FE TV + + E E+ + +R+ E + +D +
Sbjct: 62 PNERLGKLRQDQFAFE---EFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVAD 118
Query: 216 LLDEFDLLQRKAQAVNLD--TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L +F +D T +A+ +L+ +G + L++ + GW++R+ L +
Sbjct: 119 LEVKF---------AEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQA 169
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
L +PD+LLLDEPTN+LD++TI WLE L +++ M+IISHDR FL+ +CT + + + G
Sbjct: 170 LFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGE 229
Query: 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKL 392
R Y GNY +Y+ E A K++ +I + + ++R A A+ + A+S K++
Sbjct: 230 LRVYPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQI 289
Query: 393 ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEK 452
++++ EE KP R+ IRF + + R+ + ++NL G+++ LF NL +E GE+
Sbjct: 290 DKIKLEEV--KPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGER 347
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVA 512
AIIG NG GK+TLL+ ++G +P G V E N Y+ Q+ A + D T+ + ++
Sbjct: 348 LAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-NANIGYYAQDHAYDFENDLTLFDWMS 406
Query: 513 EAAEDWRI--DD---IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ WR DD ++G LGR F D + + V +LSGGEK
Sbjct: 407 Q----WRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEK 444
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 230 bits (589), Expect = 7e-68
Identities = 155/469 (33%), Positives = 251/469 (53%), Gaps = 43/469 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + S+ +L + ++ E+V LVG NGAGK+T ++I+ G+ D G +I
Sbjct: 4 ISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYE 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ ++ +A L Q+ ++ TV + F++ EE A L+R D + L
Sbjct: 64 Q-DLIVARLQQDPPRNVEGTVYD-FVAEGIEE--QAEYLKRYHDISHLVETDP--SEKNL 117
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+E LQ + NL L+ ++++++ +LG D D ++S S GW + +LG+ L+ +
Sbjct: 118 NELAKLQEQLDHHNLWQLENRINEVLAQLGL---DPDAALSSLSGGWLRKAALGRALVSN 174
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
PD+LLLDEPTNHLD++TIEWLEG+L ++ ISHDR+F+ + T+IV+ + G +Y
Sbjct: 175 PDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVSY 234
Query: 338 EGNYSQYVLEKAAWI---ESQYAAWEKQ--QRE--IEQTKDLINRLGAGA----NSGRAS 386
GNY QY+LEK + E Q A ++++ Q E I Q G A N GR
Sbjct: 235 PGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQ--------GIKARRTRNEGRV- 285
Query: 387 SAEKKL--ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
A K L ER + E + K++ E RSG+ V ++N+ + + + L +
Sbjct: 286 RALKALRRERSERREVMGT------AKMQVEEASRSGKIVFEMENVNYQIDGKQLVKDFS 339
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
++RG+K A+IGPNGCGK+TLLKL++G + G + G + YF+Q++AE LD +
Sbjct: 340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGTKLEVA-YFDQHRAE-LDPE 397
Query: 505 KTVLETVAEAAEDWRIDDIK----GLLGRCNFKADMLDRKVSLLSGGEK 549
KTV++ +AE ++ ++ G L F V LSGGE+
Sbjct: 398 KTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGER 446
|
Length = 635 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 3e-60
Identities = 145/446 (32%), Positives = 233/446 (52%), Gaps = 24/446 (5%)
Query: 108 KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
+GV VL D T + G+KVGLVG NG GK+T L ++ + D G+ N ++A++
Sbjct: 11 RGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSY-TFPGNWQLAWV 69
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+QE ++ + E + +E +++ L A + D G + + K
Sbjct: 70 NQE-TPALPQPALEYVIDGDRE-------YRQLEAQLHDANERND--GHAIA---TIHGK 116
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A++ T+ ++ + L+ LGF+ + +R V+ FS GW+MR++L + L+ DLLLLDEP
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 287 TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346
TNHLDLD + WLE +L +++ISHDR FLD + KI+ E Y GNYS + +
Sbjct: 177 TNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFEYTGNYSSFEV 236
Query: 347 EKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR-ASSAEKKLERLQ--EEEQIEK 403
++A + Q A +E QQ + + I+R A A + A S K LER++ ++
Sbjct: 237 QRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDN 296
Query: 404 PFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463
PF R PE + ++ ++ + GY DR++ + L + G + ++G NG GK
Sbjct: 297 PF---HFSFRAPESLPN--PLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGK 351
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523
STL+KL+ G P GE+ L + L YF Q+Q E L D++ L+ +A A +
Sbjct: 352 STLIKLLAGELAPVSGEIGLAKGIKL-GYFAQHQLEFLRADESPLQHLARLAPQELEQKL 410
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LG F+ D + + SGGEK
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEK 436
|
Length = 638 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 188 bits (479), Expect = 6e-52
Identities = 139/485 (28%), Positives = 230/485 (47%), Gaps = 31/485 (6%)
Query: 82 YSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
Y N N G +I + +EN S S G ++ D + + G GLVG NG GKTT LR
Sbjct: 163 YVNHDGNGGGPAIKD-IHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLR 221
Query: 142 IIAGQEEPDSGNVIKAKSNMKIAFLSQEF--------------EVSMSRTVREEF-MSAF 186
+A + N +I + QE ++ ++ + EE + A
Sbjct: 222 YMAMHA------IDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQ 275
Query: 187 KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
+ E+E + + + A + VD D + + L+E + ++ + ++ T +A+ + ++ L
Sbjct: 276 QRELEFETETGKGKGANKDGVDK-DAVSQRLEE---IYKRLELIDAYTAEARAASILAGL 331
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD 306
FT + + +FS GW+MR++L + L +PDLLLLDEPTNHLDL + WLE YL K
Sbjct: 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWP 391
Query: 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREI 366
+++SH R FL+ + T I+ TY+G+Y + + +++Q A+E +R
Sbjct: 392 KTFIVVSHAREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSR 451
Query: 367 EQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE-RGRSGRSVV 425
+ I++ N+ RAS + +++ L ++ K FP R G ++
Sbjct: 452 SHMQAFIDKF--RYNAKRASLVQSRIKALDRLGHVDAVVNDPDYKFEFPTPDDRPGPPII 509
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + FGY LLF N I+ + A++GPNG GKST+LKLI G +P G V
Sbjct: 510 SFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRS 569
Query: 485 EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLL 544
V F Q+ + LDL L + ++ LG ++ + + L
Sbjct: 570 A-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTL 628
Query: 545 SGGEK 549
SGG+K
Sbjct: 629 SGGQK 633
|
Length = 718 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 170 bits (433), Expect = 2e-46
Identities = 80/253 (31%), Positives = 130/253 (51%), Gaps = 47/253 (18%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+SK Y G +LKD+++ + +G+++ +VG NGAGK+T L+++AG+ P SG V
Sbjct: 322 LEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV 381
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ +KI + Q D++D +
Sbjct: 382 GE-TVKIGYFDQHR-------------------------------------DELDPDKTV 403
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L+E D + +V + GFT +D ++ V S G + R+ L K+LLQ
Sbjct: 404 LEEL-------SEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQ 456
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336
P+LLLLDEPTNHLD++++E LE L + ++++SHDR FLD++ T+I E V
Sbjct: 457 PPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVEDKV-EE 515
Query: 337 YEGNYSQYVLEKA 349
+EG Y Y+ +K
Sbjct: 516 FEGGYEDYLEQKK 528
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-34
Identities = 74/257 (28%), Positives = 128/257 (49%), Gaps = 51/257 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + + K++ ++ GE++ ++G NG GKTT LR + G+ EPDSG +K
Sbjct: 320 LEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKW 378
Query: 158 KSNMKIAFLSQ----EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
N I + +Q +FE ++ ++MS +++E E AV +
Sbjct: 379 SENANIGYYAQDHAYDFENDLTLF---DWMSQWRQE-----------GDDEQAVRGT--L 422
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GRLL F+ DD + V S G + RM GK+
Sbjct: 423 GRLL------------------------------FSQDDIKKSVKVLSGGEKGRMLFGKL 452
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
++Q P++L++DEPTNH+D+++IE L L K + ++ +SHDR F+ L T+I+E
Sbjct: 453 MMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPDG 512
Query: 334 SRTYEGNYSQYVLEKAA 350
+ G Y +Y+ +
Sbjct: 513 VVDFSGTYEEYLRSQGI 529
|
Length = 530 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 2e-33
Identities = 69/244 (28%), Positives = 114/244 (46%), Gaps = 54/244 (22%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N++K Y G T L V++EV+ GE GL+G NGAGKTT L+I+AG +P SG ++
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
AK +I ++ QE + TVR E +E +L + K
Sbjct: 65 LGYDVVKEPAKVRRRIGYVPQEPSLYPELTVR--------ENLEFFARLYGLSKE----- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + LL+ F L D ++ V + S G + R
Sbjct: 112 EAEERIEELLELFGL---------------------------EDKANKKVRTLSGGMKQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+S+ LL DP+LL+LDEPT+ LD + E L + V +++ +H ++LC
Sbjct: 145 LSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELC 204
Query: 324 TKIV 327
+++
Sbjct: 205 DRVI 208
|
Length = 293 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 2e-31
Identities = 97/499 (19%), Positives = 187/499 (37%), Gaps = 114/499 (22%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--- 150
+++EN++ + V ++DV++EV+ GE +G+VG +G+GK+T + G
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 151 -SGNVIKAKSNMKIAFLSQEFEVSMSRT--VREEFMSAFKEEMEIAGKLERVQKALESAV 207
SG VI ++ + ++ R + ++ M++ M I ++ +
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS-FSSGWQM 266
+ + +AV +L+ ++G + S G +
Sbjct: 126 RA--------------EARKRAV----------ELLEQVGLPDPERRDRYPHQLSGGMRQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
R+ + L P LL+ DEPT LD+ T ++ L+ + + ++ I+HD + +L
Sbjct: 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAEL 221
Query: 323 CTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382
++V V+ K +E+ + T+ L+ +
Sbjct: 222 ADRVV-----------------VMYKGEIVETGPTEEILSNPQHPYTRGLLAAV------ 258
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDR-LLF 440
P + IR P RG +++++NL Y R LF
Sbjct: 259 ---------------------PRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLF 297
Query: 441 NRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
R + + GE ++G +G GKSTL +++ GL P G ++ ++
Sbjct: 298 VRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDL 357
Query: 491 NYFE------------QNQAEALDLDKTVLETVAEA-------AEDWRIDDIKGLLGRCN 531
E Q+ +L+ TV + +AE + R + LL
Sbjct: 358 TGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVG 417
Query: 532 FKADMLDRKVSLLSGGEKV 550
+ LDR LSGG++
Sbjct: 418 LPPEFLDRYPHELSGGQRQ 436
|
Length = 539 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-30
Identities = 83/252 (32%), Positives = 129/252 (51%), Gaps = 50/252 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SK + ++ D+++++ G VG++G NGAGK+T R+I GQE+PDSG IK
Sbjct: 323 IEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKI 381
Query: 158 KSNMKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+K+A++ Q + + ++TV EE I+G L+ +Q + ++ R
Sbjct: 382 GETVKLAYVDQSRDALDPNKTVWEE----------ISGGLDIIQ------LGKREVPSR- 424
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
A V + F D + V S G + R+ L K L
Sbjct: 425 --------------------AYVGRF----NFKGSDQQKKVGQLSGGERNRVHLAKTLKS 460
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGVS 334
++LLLDEPTN LD++T+ LE L + V+ISHDR FLD++ T I+ E G S
Sbjct: 461 GGNVLLLDEPTNDLDVETLRALEEAL--LEFAGCAVVISHDRWFLDRIATHILAFE-GDS 517
Query: 335 RT--YEGNYSQY 344
+EGNYS+Y
Sbjct: 518 HVEWFEGNYSEY 529
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 112 bits (284), Expect = 2e-29
Identities = 39/69 (56%), Positives = 55/69 (79%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319
S G +MR++L K+LL++P+LLLLDEPTNHLDL++IE LE L + ++++SHDR FL
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFL 130
Query: 320 DQLCTKIVE 328
DQ+ TKI+E
Sbjct: 131 DQVATKIIE 139
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 3e-28
Identities = 68/233 (29%), Positives = 112/233 (48%), Gaps = 39/233 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K +++K+Y VL D++ VKKGE G +G NGAGKTT ++II G +PDSG
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG----- 55
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I F + ++ ++ R + A E L +A +++ L+ RL
Sbjct: 56 ----EITFDGKSYQKNIEALRR---IGALIEAPGFYPNL--------TARENLRLLARL- 99
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L ++ +++ +G D + V FS G + R+ + LL +
Sbjct: 100 --------------LGIRKKRIDEVLDVVGL-KDSAKKKVKGFSLGMKQRLGIALALLGN 144
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
PDLL+LDEPTN LD D I+ L L Q + ++I SH + + ++ +I
Sbjct: 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIG 197
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 4e-27
Identities = 60/243 (24%), Positives = 109/243 (44%), Gaps = 50/243 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++EN++ SY VL+D++ V+KGE L+G NGAGK+T L+ I G +P SG +
Sbjct: 5 IEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIF 64
Query: 156 -----KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + ++I ++ Q+ V S TV++ + + G R+ K + VD
Sbjct: 65 GKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKK---GWFRRLNKKDKEKVD 121
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+ + + DR + S G + R+
Sbjct: 122 ------EALERVGMEDLR---------------------------DRQIGELSGGQKQRV 148
Query: 269 SLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
L + L Q+PDLLLLDEP +D + + L+ L ++ +++++HD +
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE-LRQEGKTVLMVTHDLGLVMAYFD 207
Query: 325 KIV 327
+++
Sbjct: 208 RVI 210
|
Length = 254 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 5e-27
Identities = 83/253 (32%), Positives = 133/253 (52%), Gaps = 52/253 (20%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+SKS+ ++ D+++ + G VG++G NGAGK+T ++I GQE+PDSG IK
Sbjct: 325 IEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGT-IKI 383
Query: 158 KSNMKIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+K+A++ Q + ++ ++TV EE I+G L+ ++ V + ++ R
Sbjct: 384 GETVKLAYVDQSRD-ALDPNKTVWEE----------ISGGLDIIK------VGNREIPSR 426
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
A V + F D + V S G + R+ L K L
Sbjct: 427 ---------------------AYVGRF----NFKGGDQQKKVGVLSGGERNRLHLAKTLK 461
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDRAFLDQLCTKIVETEMGV 333
Q ++LLLDEPTN LD++T+ LE L + P V+ISHDR FLD++ T I+ E G
Sbjct: 462 QGGNVLLLDEPTNDLDVETLRALEEAL--LEFPGCAVVISHDRWFLDRIATHILAFE-GD 518
Query: 334 SRT--YEGNYSQY 344
S+ +EGN+ +Y
Sbjct: 519 SQVEWFEGNFQEY 531
|
Length = 556 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 107 bits (271), Expect = 7e-27
Identities = 73/254 (28%), Positives = 112/254 (44%), Gaps = 74/254 (29%)
Query: 99 KLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+L+N+S SY L D++ +KKGE V +VG NG+GK+T LR++ G P SG V
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 155 ----IKAKSNM----KIAFLSQEFEVSMSR-TVREEFMSAF--------KEEMEIAGKLE 197
+ S K+ + Q + TV EE AF +EE+E E
Sbjct: 61 DGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEV--AFGLENLGLPEEEIE-----E 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV++ALE V L+ L DR
Sbjct: 114 RVEEALE------------------------LVGLEGLR-----------------DRSP 132
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIIS 313
+ S G + R+++ +L DPD+LLLDEPT LD + +E L+ L + ++I++
Sbjct: 133 FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKK-LKAEGKTIIIVT 191
Query: 314 HDRAFLDQLCTKIV 327
HD L +L +++
Sbjct: 192 HDLDLLLELADRVI 205
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 65/252 (25%), Positives = 109/252 (43%), Gaps = 66/252 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++EN+S Y G +L D+++ + KGE G++G NG+GK+T L+ +AG +P SG V
Sbjct: 3 LEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLD 62
Query: 155 ---IKAKSNM----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I + S K+A++ Q TV E V
Sbjct: 63 GKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE-------------------------LV 97
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L+GR L F ++ + V + + LG DR V S G +
Sbjct: 98 ----LLGRYPHLGLFGRPSKEDE--------EIVEEALELLG-LEHLADRPVDELSGGER 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+ + + L Q+ +LLLDEPT+HLD L+ + L ++ + +V++ HD
Sbjct: 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLN---REKGLTVVMVLHD--- 198
Query: 319 LDQ---LCTKIV 327
L+ ++
Sbjct: 199 LNLAARYADHLI 210
|
Length = 258 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-25
Identities = 63/240 (26%), Positives = 112/240 (46%), Gaps = 48/240 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++E+++ SY G VL+DV++EVK GE + +VG NGAGK+T L+ I G +P SG++
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 156 --KAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL-ESAVDDM 210
K +I ++ Q + +VR+ + + +L + KA + A++ +
Sbjct: 61 KPLEKERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV 120
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L +L R + L S G Q R+ L
Sbjct: 121 GL-------SELADR-----QIGEL-------------------------SGGQQQRVLL 143
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327
+ L+QDPDLLLLDEP +D T E + L + + + +++++HD + + +++
Sbjct: 144 ARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVL 203
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 8e-25
Identities = 69/255 (27%), Positives = 112/255 (43%), Gaps = 67/255 (26%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK+Y G V LK V+ ++KGE V +VG +G+GK+T L I+ G + P SG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 154 VIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--E 197
V +++ I F+ Q F + T E + +AG E
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP----LLLAGVPKKE 116
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E LL+ L R L+ S+L
Sbjct: 117 RRERAEE-----------LLERVGLGDR---------LNHYPSEL--------------- 141
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
S G Q R+++ + L DP ++L DEPT +LD +T +E L + +V+++
Sbjct: 142 ---SGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVT 198
Query: 314 HDRAFLDQLCTKIVE 328
HD L + +I+E
Sbjct: 199 HDP-ELAEYADRIIE 212
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 4e-24
Identities = 62/232 (26%), Positives = 98/232 (42%), Gaps = 52/232 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L+ +SK+Y V L D++ V+ GE + L+G +G GKTT LR+IAG E PDSG ++
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 158 KSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ I + Q++ + TV E AF ++ K E + E
Sbjct: 61 GRDVTGVPPERRNIGMVFQDYALFPHLTVAENI--AFGLKLRGVPKAEIRARVRELL--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L+ LL R S G Q R++
Sbjct: 116 -----ELVGLEGLLNRY------------------------------PHELSGGQQQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRA 317
L + L ++P LLLLDEP + LD E L L + + + ++HD+
Sbjct: 141 LARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQE 192
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 99.0 bits (248), Expect = 2e-23
Identities = 67/241 (27%), Positives = 109/241 (45%), Gaps = 40/241 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ ++K + G+ L DV++ V+ GE GL+G NGAGKTT +I+G P SG+V
Sbjct: 2 EVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDG 61
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEF--MSAFKEEMEIAGKLERVQKALESAVDDM 210
I +IA L + RT F F E+ + LE V A ++
Sbjct: 62 EDITGLPPHEIARL------GIGRT----FQIPRLF-PELTV---LENVMVAAQARTGSG 107
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+ R E + +A+ + L+ + L AD DR S G Q R+ +
Sbjct: 108 LLLARARREEREARERAEEL-LERV---------GL---ADLADRPAGELSYGQQRRLEI 154
Query: 271 GKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
+ L DP LLLLDEP L+ + E + L ++ + ++++ HD + L ++
Sbjct: 155 ARALATDPKLLLLDEPAAGLNPEETEELAELIRE-LRERGITVLLVEHDMDVVMSLADRV 213
Query: 327 V 327
Sbjct: 214 T 214
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 97.6 bits (244), Expect = 3e-23
Identities = 57/205 (27%), Positives = 86/205 (41%), Gaps = 54/205 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++LEN++K Y L V+ + G GL+G NGAGKTT +RI+A P SG +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 155 -IKAKSNM-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESA 206
+I +L QEF V + TVRE ++++ K + RV + LE
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLK-GIPSKEVKARVDEVLE-- 116
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
VNL D + + S S G +
Sbjct: 117 ----------------------LVNL-----------------GDRAKKKIGSLSGGMRR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L+ DP +L++DEPT LD
Sbjct: 138 RVGIAQALVGDPSILIVDEPTAGLD 162
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 96.4 bits (241), Expect = 4e-23
Identities = 63/235 (26%), Positives = 103/235 (43%), Gaps = 72/235 (30%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
++EN+S Y G TVL D++ ++ GE VG++G NGAGK+T L+ +AG +P SG ++
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
++ S+S E+A K+ V +ALE LL
Sbjct: 61 KDLA----------SLSPK-------------ELARKIAYVPQALE-----------LLG 86
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
L R + L S G + R+ L + L Q+P
Sbjct: 87 LAHLADR-----PFNEL-------------------------SGGERQRVLLARALAQEP 116
Query: 279 DLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD--RAFLDQLCTKIV 327
+LLLDEPT+HLD+ + +E L ++ +V++ HD A + +++
Sbjct: 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA--RYADRVI 169
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.6 bits (249), Expect = 6e-23
Identities = 65/247 (26%), Positives = 106/247 (42%), Gaps = 58/247 (23%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ ++L+N+ KS+ VLKDV +++ GE V L+G +G GK+T LR+IAG EEP SG ++
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 156 --------KAKSNMKIAFLSQEFEV--SMSRTVREEFMSAFKEEMEIAGKLERVQKA-LE 204
IA + Q + + M TV E + KL V KA ++
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHM--TVY--------ENIAFGLKLRGVPKAEID 111
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
V ++ AK+ L L +R S G
Sbjct: 112 KRVKEV--------------------------AKLLGLEHLL-------NRKPLQLSGGQ 138
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD----VPMVIISHDRAFLD 320
+ R++L + L++ P + LLDEP ++LD + + K + ++HD+
Sbjct: 139 RQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAM 198
Query: 321 QLCTKIV 327
L +IV
Sbjct: 199 TLADRIV 205
|
Length = 338 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 7e-23
Identities = 63/234 (26%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +++KSY ++DV++E ++GE GL+G NGAGKTT LR+IA PDSG V
Sbjct: 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTI 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ V VR + + E + +L +A +++ RL
Sbjct: 62 DGVDT----------VRDPSFVRRK-IGVLFGERGLYARL--------TARENLKYFARL 102
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L RK + A++++L L + DR V FS+G + ++++ + L+
Sbjct: 103 NG----LSRK-------EIKARIAELSKRLQL-LEYLDRRVGEFSTGMKQKVAIARALVH 150
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVII---SHDRAFLDQLCTKIV 327
DP +L+LDEPT+ LD+ T ++ + + SH ++ LC +++
Sbjct: 151 DPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVI 204
|
Length = 245 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 95.2 bits (238), Expect = 8e-23
Identities = 42/124 (33%), Positives = 61/124 (49%), Gaps = 21/124 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++NL GY R + + +L+IE GE I+GPNG GKSTLLK + GL KP GE+LL
Sbjct: 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDG 60
Query: 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545
++ +L + + V +A E + A + DR + LS
Sbjct: 61 KDL-------ASLSPKELARKIA-YVPQALELLGL-------------AHLADRPFNELS 99
Query: 546 GGEK 549
GGE+
Sbjct: 100 GGER 103
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 9e-23
Identities = 65/250 (26%), Positives = 102/250 (40%), Gaps = 53/250 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ N+ K + L D++ ++K GE V L+G +GAGK+T LRIIAG E PD+G +
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
Query: 158 KSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K+ F+ Q + + TV + K E + E + E
Sbjct: 63 GRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEE-- 120
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
LL V L+ L DR A S G +
Sbjct: 121 ---------LLRL----------VQLEGL-----------------ADRYPAQLSGGQRQ 144
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIE-WLEGYLGKQDVPMVIISHDRAFLDQL 322
R++L + L +P +LLLDEP LD + WL + V V ++HD+ +L
Sbjct: 145 RVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALEL 204
Query: 323 CTKIVETEMG 332
++V G
Sbjct: 205 ADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 93.7 bits (234), Expect = 1e-22
Identities = 31/71 (43%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y +LL +LTI G++ ++G NG GKSTLLKLI G +P G V G
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWG 60
Query: 485 EHNVLPNYFEQ 495
V YFEQ
Sbjct: 61 -STVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 3e-22
Identities = 50/149 (33%), Positives = 72/149 (48%), Gaps = 27/149 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++NL FGY + + + + +I +GE T I+GPNG GKSTLLK + GL KP+ GEVL
Sbjct: 1 MMLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 483 LGEHNV--LPN--------YFEQNQAEALDLDKTVLETVA------------EAAEDWRI 520
L ++ L Y Q+ + L TV E V + ED I
Sbjct: 61 LDGKDIASLSPKELAKKLAYVPQSPSAPFGL--TVYELVLLGRYPHLGLFGRPSKEDEEI 118
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ L + DR V LSGGE+
Sbjct: 119 --VEEALELLGL-EHLADRPVDELSGGER 144
|
Length = 258 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 3e-22
Identities = 69/254 (27%), Positives = 121/254 (47%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++++N+SKS+ VLK ++ V+KGE V ++G +G+GK+T LR + G EEPDSG++
Sbjct: 3 IEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVD 62
Query: 155 ---IKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ K ++ K+ + Q+F + TV E A KL + +A E A
Sbjct: 63 GEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLA----PVKVKKLSK-AEAREKA 117
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ LL++ L KA A P A S G Q
Sbjct: 118 LE-------LLEKVGLAD-KADA-------------YP-------------AQLSGGQQQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFL 319
R+++ + L DP ++L DEPT+ LD LD ++ L ++ + M+I++H+ F
Sbjct: 144 RVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMIIVTHEMGFA 199
Query: 320 DQLCTKIVETEMGV 333
++ +++ + G
Sbjct: 200 REVADRVIFMDQGK 213
|
Length = 240 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 4e-22
Identities = 57/201 (28%), Positives = 88/201 (43%), Gaps = 53/201 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+SK Y V+ V+ VK+GE VGL+G NGAGKTT +I G +PDSG +
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ERVQKALES 205
+ ++ + I +L QE + TV E ++ +EI G + ++ LE
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAV----LEIRGLSKKEREEKLEE 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
LL+EF + + K +S S G +
Sbjct: 117 ----------LLEEFHI--------------THLRK-------------SKASSLSGGER 139
Query: 266 MRMSLGKILLQDPDLLLLDEP 286
R+ + + L +P LLLDEP
Sbjct: 140 RRVEIARALATNPKFLLLDEP 160
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 6e-22
Identities = 66/258 (25%), Positives = 112/258 (43%), Gaps = 64/258 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK Y V LKDV E++ GE V +VG +G+GK+T L ++ G ++P SG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 154 VI-----------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL-ER 198
V+ K + + KI F+ Q F + TV E + IAGK R
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELP----LLIAGKSAGR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++A E LL+ L R + +
Sbjct: 118 RKRAAEE----------LLEVLGLEDRLL--------------------------KKKPS 141
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G Q R+++ + L+ +P ++L DEPT +LD T +E L ++ +++++H
Sbjct: 142 ELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201
Query: 315 DRAFLDQLCTKIVETEMG 332
D +++E + G
Sbjct: 202 DPELAKY-ADRVIELKDG 218
|
Length = 226 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 1e-21
Identities = 56/198 (28%), Positives = 91/198 (45%), Gaps = 35/198 (17%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + ++K + K V + V++ VK GE GL+G NGAGKTT LR++AG EPD+G
Sbjct: 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGF 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
V V+E + + + L +A ++++
Sbjct: 62 A----------------TVDGFDVVKEPA--EARRRLGFVSDSTGLYDRL-TARENLEYF 102
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
L + D L A++ +L LG + DR V FS+G + ++++ +
Sbjct: 103 AGL-----------YGLKGDELTARLEELADRLGM-EELLDRRVGGFSTGMRQKVAIARA 150
Query: 274 LLQDPDLLLLDEPTNHLD 291
L+ DP +LLLDEPT LD
Sbjct: 151 LVHDPPVLLLDEPTTGLD 168
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 92.1 bits (230), Expect = 1e-21
Identities = 35/92 (38%), Positives = 53/92 (57%), Gaps = 9/92 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SK Y T L D++ V+KGE GL+G NGAGKTT ++II G +PDSG +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVRE 180
+ +I +L +E + + TVRE
Sbjct: 61 GKDIKKEPEEVKRRIGYLPEEPSLYENLTVRE 92
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-21
Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 48/202 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+LEN++K + VT L D+ ++ GE V L+G +G GKTT LR+IAG EEP SG +
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ IA + Q + + TV + AF ++ K E ++ E A
Sbjct: 61 GRDVTDLPPKDRDIAMVFQNYALYPHMTVYDNI--AFGLKLRKVPKDEIDERVREVA--- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
LL LL RK + + S G + R++
Sbjct: 116 -----ELLQIEHLLDRKPKQL------------------------------SGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
LG+ ++++P + L+DEP ++LD
Sbjct: 141 LGRAIVREPKVFLMDEPLSNLD 162
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.6 bits (231), Expect = 4e-21
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 53/229 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++E +SKS+ GV VL+D+ V+KGE V ++G +G GK+T LR+IAG E+P SG V
Sbjct: 4 LEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLD 63
Query: 155 --IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAVDDM 210
I ++ QE + TV + +E+ GK E ++A E
Sbjct: 64 GRPVTGPGPDIGYVFQEDALLPWLTVLDNVALG----LELRGKSKAEARERAKE------ 113
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
LL+ L A D+ S G + R+++
Sbjct: 114 -----LLELVGL---------------------------AGFEDKYPHQLSGGMRQRVAI 141
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHD 315
+ L P LLLLDEP LD T E L + +++++HD
Sbjct: 142 ARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHD 190
|
Length = 248 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.7 bits (239), Expect = 6e-21
Identities = 59/304 (19%), Positives = 114/304 (37%), Gaps = 77/304 (25%)
Query: 63 QSDVESLFSS----------SADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--- 109
E + S+ +A + + G + + N+SK Y
Sbjct: 236 TGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKG 295
Query: 110 --------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
V + DV++++++GE +GLVG +G+GK+T RI+AG P SG++I
Sbjct: 296 LFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL 355
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ + +++ F ++ TV +
Sbjct: 356 DLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDI-------------------------- 389
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L L + + A+V++L+ +G + DR S G + R
Sbjct: 390 ----LAEPLRIHGGGSGAERR--------ARVAELLELVGLPPEFLDRYPHELSGGQRQR 437
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + L +P LL+LDEP + LD + L+ + + + ISHD A + +
Sbjct: 438 VAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIA 497
Query: 324 TKIV 327
++
Sbjct: 498 DRVA 501
|
Length = 539 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 91.0 bits (227), Expect = 6e-21
Identities = 57/239 (23%), Positives = 104/239 (43%), Gaps = 45/239 (18%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++K+YK + D++ V KGE GL+G NGAGKTT L+++ G+ P SG
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
++ + S +F + F +E+ + + + R
Sbjct: 61 INGYSI----RTDRKAARQSLGYCPQFDALF-DEL--------------TVREHLRFYAR 101
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L + + + +V L+ LG T D ++ + S G + ++SL L+
Sbjct: 102 L-----------KGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLAIALI 149
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +LLLDEPT+ LD D I + ++ +++ +H + LC +I
Sbjct: 150 GGPSVLLLDEPTSGLDPASRRAIWDLILEV-----RKGRSIILTTHSMDEAEALCDRIA 203
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 7e-21
Identities = 57/242 (23%), Positives = 113/242 (46%), Gaps = 44/242 (18%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + N+S Y G L +V+ E+++GE +G+VG +G+GK+T R++AG E+P SG+
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + + ++ K ++ V + S+++ +
Sbjct: 64 I----------------------LLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTV 101
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
GR+L E + L ++++L+ ++G DR S G + R+++ +
Sbjct: 102 GRILSE------PLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA 155
Query: 274 LLQDPDLLLLDEPTNHLDLDT--------IEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L+ +P LL+LDEPT+ LD+ +E + + + ISHD A ++ +C +
Sbjct: 156 LIPEPKLLILDEPTSALDVSVQAQILNLLLELKKER----GLTYLFISHDLALVEHMCDR 211
Query: 326 IV 327
I
Sbjct: 212 IA 213
|
Length = 252 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 9e-21
Identities = 50/161 (31%), Positives = 68/161 (42%), Gaps = 37/161 (22%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S++T++NL Y DR L +LT+ GE+ ++G NG GKSTLLK++ G +P GEV
Sbjct: 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWR-------------IDDIKGLLGR 529
+ Y Q LD +KTVL+ V E + R D LL
Sbjct: 62 R-PKGLRVGYLSQEP--PLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAE 118
Query: 530 CNFKADMLD---------------------RKVSLLSGGEK 549
+ LD R VS LSGG +
Sbjct: 119 LEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWR 159
|
Length = 530 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 9e-21
Identities = 71/244 (29%), Positives = 111/244 (45%), Gaps = 64/244 (26%)
Query: 100 LENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ENIS SYK T +L D++ ++ GE + L G NGAGKTT +I+AG + SG++
Sbjct: 2 IENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 155 --IKAKSNMK-IAFLSQE-----FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
IKAK K I ++ Q+ F S VREE + K E+ E+ +
Sbjct: 62 KPIKAKERRKSIGYVMQDVDYQLFTDS----VREELLLGLK---ELDAGNEQAET----- 109
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L + DL K +R S S G +
Sbjct: 110 ---------VLKDLDLYALK---------------------------ERHPLSLSGGQKQ 133
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
R+++ LL DLL+ DEPT+ LD ++ + L L Q +++I+HD FL ++C
Sbjct: 134 RLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVC 193
Query: 324 TKIV 327
+++
Sbjct: 194 DRVL 197
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 1e-20
Identities = 33/71 (46%), Positives = 51/71 (71%), Gaps = 1/71 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++LEN+SK+Y G +LKD++ + G+++GLVG NGAGK+T L++IAG+ EPD G +
Sbjct: 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGI-VTW 59
Query: 158 KSNMKIAFLSQ 168
S +KI + Q
Sbjct: 60 GSTVKIGYFEQ 70
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 1e-20
Identities = 69/238 (28%), Positives = 108/238 (45%), Gaps = 49/238 (20%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166
LKD+++E+ KGE+VG++G NGAGK+T L++IAG +P SG V K K+A L
Sbjct: 37 VAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV---KVTGKVAPL 93
Query: 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
E+ F E+ + +++ L G +L L RK
Sbjct: 94 ---IELGAG----------FDPEL--------------TGRENIYLRGLILG----LTRK 122
Query: 227 AQAVNLDTLDAKVSKLM--PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+D KV +++ ELG D D+ V ++SSG R++ +PD+LLLD
Sbjct: 123 E-------IDEKVDEIIEFAELG---DFIDQPVKTYSSGMYARLAFSVATHVEPDILLLD 172
Query: 285 EPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEG 339
E D E L +++ +V++SHD + Q C + + E G R
Sbjct: 173 EVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGS 230
|
Length = 249 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 1e-20
Identities = 60/256 (23%), Positives = 110/256 (42%), Gaps = 66/256 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++++N+S S+ V L DV++ +KKGE +GLVG +G+GK+T R I G +P SG+
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 154 VI---KAKSNM----------KIAFLSQEFEVSMS-----RTVREEFMSAFKEEMEIAGK 195
+I K + +I + Q+ MS T+ E E + I GK
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQD---PMSSLNPRMTIGE----QIAEPLRIHGK 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
L + + E V L+ +G + +R
Sbjct: 115 LSKKEARKE---------------------------------AVLLLLVGVGLPEEVLNR 141
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVI 311
S G + R+++ + L +P LL+ DEPT+ LD+ ++ L+ + + ++
Sbjct: 142 YPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLF 201
Query: 312 ISHDRAFLDQLCTKIV 327
I+HD + ++ ++
Sbjct: 202 ITHDLGVVAKIADRVA 217
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 2e-20
Identities = 73/253 (28%), Positives = 116/253 (45%), Gaps = 66/253 (26%)
Query: 98 VKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++LEN+SK++ VT L DV+ E+ KGE G++G +GAGK+T LR+I E P SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 153 NV------IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
+V + A S KI + Q F + SRTV E +E+AG K E
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFP----LELAGVPKAE 117
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
Q+ E LL+ L +D DR
Sbjct: 118 IKQRVAE-----------LLELVGL---------------------------SDKADRYP 139
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIIS 313
A S G + R+++ + L +P +LL DE T+ LD +T +E L+ + + +V+I+
Sbjct: 140 AQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLIT 199
Query: 314 HDRAFLDQLCTKI 326
H+ + ++C ++
Sbjct: 200 HEMEVVKRICDRV 212
|
Length = 339 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 67/251 (26%), Positives = 99/251 (39%), Gaps = 47/251 (18%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
++ +SK + G+T + DV+ EV+ GE VGL+G NGAGKTT +I G +P SG V
Sbjct: 6 EVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRG 65
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSA--FKEEMEIAGKLERVQKALES 205
I +IA L Q + TV E + + R +K
Sbjct: 66 RDITGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEERE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A + LL+ L + DR + S G Q
Sbjct: 126 A---RERARELLEFVGLGELA---------------------------DRPAGNLSYGQQ 155
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321
R+ + + L P LLLLDEP L+ + E L + + V +++I HD +
Sbjct: 156 RRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMG 215
Query: 322 LCTKIVETEMG 332
L +IV G
Sbjct: 216 LADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.3 bits (233), Expect = 4e-20
Identities = 68/241 (28%), Positives = 105/241 (43%), Gaps = 44/241 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ISKS+ GV L V+ V+ GE L+G NGAGK+T ++I++G PDSG
Sbjct: 9 LELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG----- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-----L 212
+I + S R + AG + V + L S V ++
Sbjct: 64 ----EILIDGKPVAFSSPR------------DALAAG-IATVHQEL-SLVPNLSVAENIF 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLG 271
+GR R+ ++ + + +L+ LG D D LV S Q +M +
Sbjct: 106 LGR------EPTRRFGLIDRKAMRRRARELLARLGLD-IDPDTLVGDLSIA-QRQMVEIA 157
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH--DRAFLDQLCTKI 326
+ L D +L+LDEPT L + E L L Q V ++ ISH D F ++ +I
Sbjct: 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF--EIADRI 215
Query: 327 V 327
Sbjct: 216 T 216
|
Length = 500 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 5e-20
Identities = 65/232 (28%), Positives = 102/232 (43%), Gaps = 55/232 (23%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+++ N+SK+Y G VT L+D++ V++GE V LVG +G GK+T LRIIAG E P SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 154 VI-----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
V+ ++ Q+ + TV + A E++ K E ++A E
Sbjct: 61 VLVDGEPVTGPGPDRGYVFQQDALLPWLTVLDNV--ALGLELQGVPKAEARERAEE---- 114
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMR 267
LL+ L + P +L S G + R
Sbjct: 115 -------LLELVGL--------------SGFENAYPHQL--------------SGGMRQR 139
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
++L + L DPD+LLLDEP + LD E L + +++++HD
Sbjct: 140 VALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHD 191
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 5e-20
Identities = 65/235 (27%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
G++L +S S G ++ V G GL+G NG+GK+T LR++AG PD+G V
Sbjct: 1 GLRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDL 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
A ++ +SR R ++ +++ + A L V D+ +GR
Sbjct: 61 AGVDLH----------GLSRRARARRVALVEQDSDTAVPL---------TVRDVVALGR- 100
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ R A + A V + + + DR +++ S G + R+ + + L Q
Sbjct: 101 -----IPHRSLWAGDSPHDAAVVDRALARTELS-HLADRDMSTLSGGERQRVHVARALAQ 154
Query: 277 DPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+P LLLLDEPTNHLD L+T+ + V +V HD C +V
Sbjct: 155 EPKLLLLDEPTNHLDVRAQLETLALVRELAATG-VTVVAALHDLNLAASYCDHVV 208
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 5e-20
Identities = 61/223 (27%), Positives = 96/223 (43%), Gaps = 33/223 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L D++W+V GE +VG NGAGKTT L ++ G+ P SG+V
Sbjct: 34 LKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVT---- 89
Query: 160 NMKIAFLSQEF-EVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
L + F + +R+ +S E+ + + + L G
Sbjct: 90 -----LLGRRFGKGETIFELRKRIGLVS-----SELHERFRVRETVRDVV-----LSG-F 133
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ Q A +L L+ LG DR S S G Q R+ + + L++
Sbjct: 134 FASIGIYQEDLTAEDLA----AAQWLLELLGAKHLA-DRPFGSLSQGEQRRVLIARALVK 188
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVP-----MVIISH 314
DP+LL+LDEP LDL E L L + ++ ++H
Sbjct: 189 DPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231
|
Length = 257 |
| >gnl|CDD|221805 pfam12848, ABC_tran_2, ABC transporter | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 5e-20
Identities = 40/89 (44%), Positives = 59/89 (66%), Gaps = 5/89 (5%)
Query: 327 VETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN-SGRA 385
+E E G TY+GNYSQY+ +K +E Q A+EKQQ+EI++ ++ I+R A A+ + +A
Sbjct: 1 LELENGKLTTYKGNYSQYLEQKEERLEQQEKAYEKQQKEIKKLEEFIDRFRAKASKAKQA 60
Query: 386 SSAEKKLERLQEEEQIEKPFQRKQMKIRF 414
S K LE++ E+IEKP K+ KIRF
Sbjct: 61 QSRIKALEKM---ERIEKP-VEKKPKIRF 85
|
This domain is related to pfam00005. Length = 85 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 88.7 bits (220), Expect = 5e-20
Identities = 68/247 (27%), Positives = 106/247 (42%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ NISK + L DV EV G V L+G +G+GK+T LRIIAG E+PDSG +
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLN 60
Query: 156 -KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + KI F+ Q + + TVR+ IA LE
Sbjct: 61 GQDATRVHARDRKIGFVFQHYALFKHLTVRD----------NIAFGLE------------ 98
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + + A+V +L+ + GDR S G + R++
Sbjct: 99 ------------IRKHPKAKIK-----ARVEELLELVQLEG-LGDRYPNQLSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L +P +LLLDEP LD + WL + V V ++HD+ ++ +
Sbjct: 141 LARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200
Query: 326 IVETEMG 332
IV G
Sbjct: 201 IVVMSNG 207
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.8 bits (218), Expect = 8e-20
Identities = 58/230 (25%), Positives = 106/230 (46%), Gaps = 35/230 (15%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
EN+ K Y ++ V++ V++GE GL+G NGAGKTT ++++ +P SG A +
Sbjct: 4 ENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHD 63
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
+ V R VR + I + V L + +++ + RL
Sbjct: 64 V----------VREPREVRRR--------IGIVFQDLSVDDEL-TGWENLYIHARL---- 100
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
V ++ +L+ +G + DRLV ++S G + R+ + + L+ P++
Sbjct: 101 -------YGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIARSLVHRPEV 152
Query: 281 LLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326
L LDEPT LD T E++E + + +++ +H +QLC ++
Sbjct: 153 LFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRV 202
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 22/145 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++NL Y +R + +L++E+GE TA+IGPNG GKSTLLK I+GL KP GE+ +
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 484 GEHNVLPN-------YFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIK 524
V Y Q + TV + V +D +
Sbjct: 64 FGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK--VD 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
L R + D+ DR++ LSGG+K
Sbjct: 122 EALERVGME-DLRDRQIGELSGGQK 145
|
Length = 254 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 87.2 bits (217), Expect = 1e-19
Identities = 46/143 (32%), Positives = 72/143 (50%), Gaps = 25/143 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +K L Y + +LT+E GE A++GP+GCGK+TLL+LI GLE+P GE+L+
Sbjct: 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILID 60
Query: 485 EHNV--LPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+V +P F+ AL TV E +A +A R+ ++ L
Sbjct: 61 GRDVTGVPPERRNIGMVFQDY---ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLEL 117
Query: 527 LGRCNFKADMLDRKVSLLSGGEK 549
+G +L+R LSGG++
Sbjct: 118 VGL----EGLLNRYPHELSGGQQ 136
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 87.6 bits (218), Expect = 1e-19
Identities = 67/256 (26%), Positives = 110/256 (42%), Gaps = 69/256 (26%)
Query: 98 VKLENISKSY----------------------KGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
++LEN+SKSY LKDV++EV +GE++GL+G NGAG
Sbjct: 1 IELENVSKSYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAG 60
Query: 136 KTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195
K+T LR++AG PDSG V +++ L F E+
Sbjct: 61 KSTLLRLLAGIYPPDSGTV---TVRGRVSSLL-------------GLGGGFNPEL----- 99
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
+ +++ L GRLL L +++ + ++ ELG D D
Sbjct: 100 ---------TGRENIYLNGRLL---GLSRKEIDEKIDEIIE------FSELG---DFIDL 138
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPT----NHLDLDTIEWLEGYLGKQDVPMVI 311
V ++SSG + R++ +PD+LL+DE L L KQ +++
Sbjct: 139 PVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRE-LLKQGKTVIL 197
Query: 312 ISHDRAFLDQLCTKIV 327
+SHD + + +LC + +
Sbjct: 198 VSHDPSSIKRLCDRAL 213
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 49/199 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
EN++KSYK V+ DV+ EV GE VGL+G NGAGKTT +I G PDSG +
Sbjct: 6 VAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDD 65
Query: 155 -------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ ++ + I +L QE + TV + M+ LE +K L+ A
Sbjct: 66 EDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAV----------LEIREKDLKKAE 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+L LL+EF + + D S S G + R
Sbjct: 116 RKEEL-DALLEEFHITHLR---------------------------DSKAYSLSGGERRR 147
Query: 268 MSLGKILLQDPDLLLLDEP 286
+ + + L +P +LLDEP
Sbjct: 148 VEIARALAANPKFILLDEP 166
|
Length = 243 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.0 bits (224), Expect = 2e-19
Identities = 65/241 (26%), Positives = 109/241 (45%), Gaps = 71/241 (29%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++ N+SKS+ T + D++ ++KKGE V L+G +G GKTT LR+IAG E+P SG ++
Sbjct: 6 LEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLD 65
Query: 156 -KAKSNMKIAFLSQEFEVSM---------SRTVRE------EFMSAFKEEMEIAGKLERV 199
+ +++ ++ + M TV E + K+ EI RV
Sbjct: 66 GEDITDVPP----EKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKA-EIK---ARV 117
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ALE L+G L+ F D K +L
Sbjct: 118 EEALE-------LVG--LEGF--------------ADRKPHQL----------------- 137
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
S G Q R++L + L+ +P +LLLDEP + LD + L+ + + V ++HD
Sbjct: 138 -SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHD 196
Query: 316 R 316
+
Sbjct: 197 Q 197
|
Length = 352 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-19
Identities = 59/225 (26%), Positives = 100/225 (44%), Gaps = 34/225 (15%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIA 164
K Y + V ++V++GE G +G NGAGKTT +R++ P SG A ++
Sbjct: 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--- 57
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
V R VR I + V + L + +++++MGRL L
Sbjct: 58 -------VREPRKVRRSIG--------IVPQYASVDEDL-TGRENLEMMGRLYG----LP 97
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + + +L+ + DR V ++S G + R+ + L+ PD+L LD
Sbjct: 98 KDE-------AEERAEELLELFELG-EAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLD 149
Query: 285 EPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
EPT LD T + Y L ++ V +++ +H D+LC +I
Sbjct: 150 EPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRI 194
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 2e-19
Identities = 55/205 (26%), Positives = 85/205 (41%), Gaps = 48/205 (23%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ I+K + GV DV+ VKKGE L+G NGAGK+T ++I+ G +PDSG +
Sbjct: 4 ALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + I + Q F + + TV E +
Sbjct: 64 DGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENII---------------------- 101
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+G + L+ R+ A++ +L G D D VA S G Q
Sbjct: 102 -------LGLEPSKGGLIDRRQAR-------ARIKELSERYGLPVDP-DAKVADLSVGEQ 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHL 290
R+ + K L + LL+LDEPT L
Sbjct: 147 QRVEILKALYRGARLLILDEPTAVL 171
|
Length = 501 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 86.9 bits (216), Expect = 2e-19
Identities = 63/237 (26%), Positives = 110/237 (46%), Gaps = 37/237 (15%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+S Y LKDV+ E++KGE+V L+G NG+GK+T L+++ G +P SG V+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL- 62
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
V S+ K +E+ K+ V DD +
Sbjct: 63 ---------------------VDGLDTSSEKSLLELRQKVGLVF----QNPDDQLFGPTV 97
Query: 217 LDE--FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
DE F L + + ++ +V++ + +G + DR + S G + R+++ +L
Sbjct: 98 EDEVAFGLENL---GLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIAGVL 153
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM--VIISHDRAFLDQLCTKIV 327
P++LLLDEPT LD L L K ++ +I++HD + + ++V
Sbjct: 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVV 210
|
Length = 235 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 3e-19
Identities = 66/249 (26%), Positives = 115/249 (46%), Gaps = 62/249 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++++N+ KS+ VLK + VKKGE V ++G +G+GK+T LR I EEPDSG +I
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K N+ K+ + Q+F + TV E A +V+
Sbjct: 61 GLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLA----------PIKVKG---- 106
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
KA+A + + +L+ ++G AD D A S G Q
Sbjct: 107 ------------------MSKAEA------EERALELLEKVGL-ADKADAYPAQLSGGQQ 141
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
R+++ + L +P ++L DEPT+ LD LD ++ L ++ + MV+++H+ F
Sbjct: 142 QRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK----DLAEEGMTMVVVTHEMGF 197
Query: 319 LDQLCTKIV 327
++ +++
Sbjct: 198 AREVADRVI 206
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 4e-19
Identities = 49/147 (33%), Positives = 73/147 (49%), Gaps = 29/147 (19%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + +KN+ + + NL IE GE ++GP+GCGKSTLL++I GLE+P GE+L
Sbjct: 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 483 LGEHNV--LP-----------NY-------FEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ +V LP NY +N A L L V +A D R+ +
Sbjct: 62 IDGRDVTDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG-----VPKAEIDKRVKE 116
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LLG +L+RK LSGG++
Sbjct: 117 VAKLLG----LEHLLNRKPLQLSGGQR 139
|
Length = 338 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 4e-19
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 65/252 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+SK + VT LKDV+ V KGE G++G +GAGK+T +R I G E P SG+
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ +++ +I + Q F + SRTV E +EIAG K E
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALP----LEIAGVPKAEI 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ LE LL+ L D D A
Sbjct: 118 EERVLE-----------LLELVGL---------------------------EDKADAYPA 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
S G + R+ + + L +P +LL DE T+ LD +T + L + + +V+I+H
Sbjct: 140 QLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITH 199
Query: 315 DRAFLDQLCTKI 326
+ + ++C ++
Sbjct: 200 EMEVVKRICDRV 211
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 4e-19
Identities = 60/247 (24%), Positives = 107/247 (43%), Gaps = 60/247 (24%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L+NISK + +L D+ ++KG+ ++G +G+GK+T L II E+ DSG V
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 156 -------KAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K S K+ +L Q F + + TV +E +++ K +++ K
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETV--------EENLDLGLKYKKLSK---- 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+ + L++ L + Q K+ +L S G Q
Sbjct: 109 -KEKREKKKEALEKVGLNLKLKQ---------KIYEL------------------SGGEQ 140
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + +L+ P L+L DEPT LD ++ L L + ++I++HD Q
Sbjct: 141 QRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE-LNDEGKTIIIVTHDPEVAKQ 199
Query: 322 LCTKIVE 328
+++E
Sbjct: 200 -ADRVIE 205
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 84.0 bits (209), Expect = 6e-19
Identities = 29/66 (43%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ F Y R + +LTI+ GEK AI+GP+G GKSTLLKL++ L P GE+L
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 483 LGEHNV 488
+ ++
Sbjct: 61 IDGVDL 66
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 84.8 bits (211), Expect = 9e-19
Identities = 47/141 (33%), Positives = 67/141 (47%), Gaps = 20/141 (14%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+KNL F Y D R + +LTI++GE I+GPNG GKSTLL+L+ GL P GEVL+
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 485 EHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLG 528
++ + QN + TV E VA E + + ++ L
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQN-PDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+ + DR LSGG+K
Sbjct: 121 LVGLE-GLRDRSPFTLSGGQK 140
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 1e-18
Identities = 29/63 (46%), Positives = 41/63 (65%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
I+NL F Y R + +LT++ GE A++GPNG GKSTLL+ I GL KP GE+L+
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 486 HNV 488
++
Sbjct: 61 KDI 63
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 2e-18
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 55/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ ++KS+ +L V +V +GE + ++G +G+GK+T LR+I G PD G +
Sbjct: 9 IEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILID 68
Query: 155 ---IKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
I S ++ L Q+ + S TV E +E KL E
Sbjct: 69 GEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLRE----HTKLP------E 118
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
S + ++ LM K + V L A L P + S G
Sbjct: 119 SLIRELVLM------------KLELVGLRGAAA---DLYP-------------SELSGGM 150
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISHDRAFLD 320
+ R++L + + DP+LL LDEPT+ LD I+ L L + +++++HD L
Sbjct: 151 RKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLL 210
Query: 321 QLCTKIV 327
+ ++
Sbjct: 211 TIADRVA 217
|
Length = 263 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-18
Identities = 55/205 (26%), Positives = 91/205 (44%), Gaps = 48/205 (23%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+++ N+SK + L DV+ ++ GE V L+G +G+GKTT LR+IAG E PDSG ++
Sbjct: 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 156 --KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ +++ + F+ Q + + TV + AF +
Sbjct: 62 GGEDATDVPVQERNVGFVFQHYALFRHMTVFDNV--AFGLRV------------------ 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG--DRLVASFSSGWQM 266
+ +++ + AKV +L L D DR A S G +
Sbjct: 102 ---------------KPRSERPPEAEIRAKVHEL---LKLVQLDWLADRYPAQLSGGQRQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L +P +LLLDEP LD
Sbjct: 144 RVALARALAVEPKVLLLDEPFGALD 168
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 2e-18
Identities = 60/214 (28%), Positives = 92/214 (42%), Gaps = 60/214 (28%)
Query: 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++EN+SK+Y G LKDV+ + GE V L+G +GAGK+T LR + G EP SG+V+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 156 ---------KAKSNM--KIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLE 197
KA + +I + Q+F + +V E S ++ + K E
Sbjct: 62 GTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ Q+AL L+ L LD + +L
Sbjct: 122 K-QRALA-----------ALERVGL---------LDKAYQRADQL--------------- 145
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P L+L DEP LD
Sbjct: 146 ---SGGQQQRVAIARALMQQPKLILADEPVASLD 176
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 3e-18
Identities = 61/249 (24%), Positives = 118/249 (47%), Gaps = 49/249 (19%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++K + VT L D+++ V+KGE GL+G NGAGKTT +R+I G PDSG V+
Sbjct: 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFD 60
Query: 158 KSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ +I +L +E + V ++ + +L+ ++K E A +D
Sbjct: 61 GKPLDIAARNRIGYLPEERGLYPKMKVIDQLV--------YLAQLKGLKK--EEARRRID 110
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ +L + + +V +L S G Q ++
Sbjct: 111 ---EWLERLELSEYA---------NKRVEEL------------------SKGNQQKVQFI 140
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
++ DP+LL+LDEP + LD ++ ++ + L + +++ +H +++LC +++
Sbjct: 141 AAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200
Query: 329 TEMGVSRTY 337
G + Y
Sbjct: 201 LNKGRAVLY 209
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 7e-18
Identities = 34/151 (22%), Positives = 62/151 (41%), Gaps = 25/151 (16%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KNL + +A + +I++GE ++G +G GKSTL + I+GL KP G
Sbjct: 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG 60
Query: 480 EVLLGEHNVLPN-------------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526
++ ++L Q+ +L+ T+ E +AE K
Sbjct: 61 SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEA 120
Query: 527 LGRCNFK--------ADMLDRKVSLLSGGEK 549
++L+R LSGG++
Sbjct: 121 RKEAVLLLLVGVGLPEEVLNRYPHELSGGQR 151
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 7e-18
Identities = 64/246 (26%), Positives = 116/246 (47%), Gaps = 55/246 (22%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N+S SY + L +V+ ++ GEKV ++G G+GK+T L+++AG +P SG+V+
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++++ I ++ Q+ + T+R+ ER+ +A E
Sbjct: 63 LDGTDIRQLDPADLRRNIGYVPQDVTL-FYGTLRDNITLGAPL-----ADDERILRAAEL 116
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + DL ++G + G L S G +
Sbjct: 117 AGVT-DFVNKHPNGLDL----------------------QIG---ERGRGL----SGGQR 146
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321
++L + LL DP +LLLDEPT+ +D+++ E L LG D ++II+H + LD
Sbjct: 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG--DKTLIIITHRPSLLD- 203
Query: 322 LCTKIV 327
L +I+
Sbjct: 204 LVDRII 209
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 82.2 bits (204), Expect = 1e-17
Identities = 47/150 (31%), Positives = 66/150 (44%), Gaps = 26/150 (17%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ Y A NL IE GE AI+GP+G GKSTLL L+ GL+KP G
Sbjct: 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSG 60
Query: 480 EVLLGEHNVLPNYFEQNQAEALDLDK--------------TVLETVAEAAE------DWR 519
EVL+ ++ + + L K TVLE V R
Sbjct: 61 EVLINGKDL--TKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LL + +L +K S LSGG++
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPSELSGGQQ 148
|
Length = 226 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 1e-17
Identities = 69/253 (27%), Positives = 115/253 (45%), Gaps = 59/253 (23%)
Query: 98 VKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ EN+SK+Y G L+DV++ + KGE V L G +GAGK+T L++I G+E P G ++
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 157 AK---SNMK---IAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
S +K I FL Q+F + RTV E A + + GK R +
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENV--ALP--LRVIGKPPREIRRR 117
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
S V +DL+G L K L +L S G
Sbjct: 118 VSEV--LDLVG--------------------LKHKARALPSQL--------------SGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL 319
Q R+++ + ++ P +LL DEPT +LD D + E + + +++ +HD +
Sbjct: 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEE-INRLGTTVLMATHDLELV 200
Query: 320 DQLCTKIVETEMG 332
+++ +++ E G
Sbjct: 201 NRMRHRVLALEDG 213
|
Length = 223 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 1e-17
Identities = 53/215 (24%), Positives = 93/215 (43%), Gaps = 60/215 (27%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
++++N+SK+Y G LKDV E+ +GE V ++G +GAGK+T LR + G +P SG ++
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 156 ----------KAKSNM--KIAFLSQEFEVSMSRTV-------REEFMSAFKEEMEIAGKL 196
K + I + Q+F + +V R + S ++ + K
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
++ +AL++ L+ + LD + S L
Sbjct: 124 DK-AQALDA-----------LERVGI---------LDKAYQRASTL-------------- 148
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+++ + L+Q P ++L DEP LD
Sbjct: 149 ----SGGQQQRVAIARALVQQPKIILADEPVASLD 179
|
Length = 258 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 1e-17
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +KN+ Y + + N +L IE GE A++GP+G GKSTLL+ I GLE+P G +L+
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-17
Identities = 85/321 (26%), Positives = 137/321 (42%), Gaps = 69/321 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+E +S Y +L + + G ++GL+G NGAGK+T ++++AG+ P SG + A
Sbjct: 313 LKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLA 372
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +K+ + +Q + EF+ A
Sbjct: 373 KG-IKLGYFAQH---------QLEFLRA-------------------------------- 390
Query: 218 DEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
DE L L R A L+ K+ + GF D FS G + R+ L I+
Sbjct: 391 DESPLQHLARLAPQE----LEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVW 446
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
Q P+LLLLDEPTNHLDLD + L L + +V++SHDR L + G
Sbjct: 447 QRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHDGKVE 506
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLE-- 393
++G+ Y W+ +KQ+ + ++ ANS +A +K+ E
Sbjct: 507 PFDGDLEDY----QQWLSDV----QKQENQTDEAPK-----ENNANSAQARKDQKRREAE 553
Query: 394 -RLQEE---EQIEKPFQRKQM 410
R Q + ++I + K+M
Sbjct: 554 LRTQTQPLRKEIAR--LEKEM 572
|
Length = 638 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 3e-17
Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 30/145 (20%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
+++L Y + + ++ GE AI+GPNG GKSTLLK I+GL KP G + + G+
Sbjct: 2 VEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 486 HNVLPN----YFEQNQAEALDLDK----TVLETVAEA------------AEDW-RIDDIK 524
Y Q +D+ +V + V D ++D+
Sbjct: 62 PLEKERKRIGYVPQR----RSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEAL 117
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
+G +++ DR++ LSGG++
Sbjct: 118 ERVGL----SELADRQIGELSGGQQ 138
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 3e-17
Identities = 59/254 (23%), Positives = 107/254 (42%), Gaps = 61/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N++K+Y G L + + GE V LVG +GAGK+T L++I +E P SG +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 157 AKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER-VQKA 202
++ KI + Q+F + R V E A +E+ G R ++K
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFA----LEVTGVPPREIRKR 116
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A++ + L + L A S
Sbjct: 117 VPAALELVGLSHKH-------------------------------------RALPAELSG 139
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAF 318
G Q R+++ + ++ P +L+ DEPT +LD DT + L+ + K +V+ +H +
Sbjct: 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKK-INKAGTTVVVATHAKEL 198
Query: 319 LDQLCTKIVETEMG 332
+D +++ E G
Sbjct: 199 VDTTRHRVIALERG 212
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.2 bits (209), Expect = 3e-17
Identities = 67/270 (24%), Positives = 107/270 (39%), Gaps = 56/270 (20%)
Query: 60 AKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTW 118
+A +D S + + A+ + LEN+S Y G L D+
Sbjct: 287 GEAAADKLFTLLES----PVATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLNL 342
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----------NVIKAKSNMKIAFLSQ 168
+K G+ LVG +GAGK+T L ++ G P G ++ +I+++SQ
Sbjct: 343 TIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQ 402
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
+ T+RE + A E + AL+ A LL+
Sbjct: 403 N-PYLFAGTIRENILLA-----RPDASDEEIIAALDQA--------GLLEFVPKPDG--- 445
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPT 287
LDT +G + G L SG Q R++L + LL LLLLDEPT
Sbjct: 446 ---LDT----------VIG---EGGAGL-----SGGQAQRLALARALLSPASLLLLDEPT 484
Query: 288 NHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
HLD +T + + L + + +++I+H
Sbjct: 485 AHLDAETEQIILQALQELAKQKTVLVITHR 514
|
Length = 559 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 4e-17
Identities = 45/149 (30%), Positives = 73/149 (48%), Gaps = 26/149 (17%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + I+N+ + D + +L I++GE ++GP+GCGK+TLL++I G E+P G
Sbjct: 1 MPKPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG 60
Query: 480 EVLLGEHNV--LPNY-------FEQNQAEALDLDKTVLETVA----------EAAEDWRI 520
E+LL ++ +P F Q+ AL TV E VA +A R+
Sbjct: 61 EILLDGEDITDVPPEKRPIGMVF---QSYALFPHMTVEENVAFGLKVRKKLKKAEIKARV 117
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ L+G DRK LSGG++
Sbjct: 118 EEALELVG----LEGFADRKPHQLSGGQQ 142
|
Length = 352 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 80.2 bits (199), Expect = 5e-17
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 19/141 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++ L + R + +L + RGE AIIGP+G GKSTLL+LI+GL +P GEVL+
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLID 60
Query: 485 EHNVLPNYFEQNQAE-----------ALDLDKTVLETVA------EAAEDWRIDDIKGL- 526
++ + AL TV E VA + I +I
Sbjct: 61 GEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEK 120
Query: 527 LGRCNFKADMLDRKVSLLSGG 547
L + D + LSGG
Sbjct: 121 LEAVGLRGA-EDLYPAELSGG 140
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 81.2 bits (201), Expect = 6e-17
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 15/140 (10%)
Query: 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V+ ++NL Y D+ + + +E GE ++GPNG GK+TLLK++ GL KP GE+L
Sbjct: 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEIL 63
Query: 483 LGEHNVLPNYFEQ-------NQAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ ++V+ + Q +L + TV E + A ++ + I+ LL
Sbjct: 64 VLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLEL 123
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+ D ++KV LSGG K
Sbjct: 124 FGLE-DKANKKVRTLSGGMK 142
|
Length = 293 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 6e-17
Identities = 47/200 (23%), Positives = 80/200 (40%), Gaps = 52/200 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN++ Y +L V+ V +GE V L+G NGAGKTT L+ I G P SG++
Sbjct: 2 EVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDG 61
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++ I ++ + + TV E + A + + + LE
Sbjct: 62 RDITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLG-----AYARRRAKRKARLE--- 113
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
R+ + F L+ + +L + S G Q
Sbjct: 114 -------RVYELFPRLKERR--------------------------KQLAGTLSGGEQQM 140
Query: 268 MSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 141 LAIARALMSRPKLLLLDEPS 160
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 6e-17
Identities = 62/245 (25%), Positives = 103/245 (42%), Gaps = 59/245 (24%)
Query: 65 DVESLFSSSADEFENKKYSNKQSNTGASSISS--------GVKLENISKSYKGVTVLKDV 116
+ + A ++ + + +S + L +SKSY V+ +
Sbjct: 1 LLTRAVAEEAPRRLELSPIERKHQGISEAKASIPGSMSTVAIDLAGVSKSYGDKAVVNGL 60
Query: 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAK-SNMKIAFLS 167
++ V GE GL+G NGAGK+T R+I G PD+G + +A+ + +I +
Sbjct: 61 SFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIGVVP 120
Query: 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRK 226
Q + + TVRE + + G+ + + +E+ + L EF L+ K
Sbjct: 121 QFDNLDLEFTVRENLL--------VFGRYFGMSTREIEAVIPS-------LLEFARLESK 165
Query: 227 AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
A DA+VS L S G + R++L + L+ DP LL+LDEP
Sbjct: 166 A--------DARVSDL------------------SGGMKRRLTLARALINDPQLLILDEP 199
Query: 287 TNHLD 291
T LD
Sbjct: 200 TTGLD 204
|
Length = 340 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 6e-17
Identities = 24/57 (42%), Positives = 39/57 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L I+K + GV L V+ V++GE L+G NGAGK+T ++I++G +PDSG +
Sbjct: 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 8e-17
Identities = 36/95 (37%), Positives = 53/95 (55%), Gaps = 12/95 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L+N+SK Y TVL DV+ ++ GE V L+G +G+GK+T LR IAG EEPDSG++
Sbjct: 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILID 60
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVRE 180
+I + Q+F + TV E
Sbjct: 61 GEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLE 95
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 9e-17
Identities = 65/245 (26%), Positives = 108/245 (44%), Gaps = 52/245 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L ++KS+ G TVLK V +V++GE + ++G +G+GK+T LR+I G PDSG V
Sbjct: 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV--- 57
Query: 158 KSNMKIAFLSQEFEVSMSRT----VREEFMSAFKEEMEIAGKLERVQKALESAVDDMD-- 211
+ E +S +R F+ AL D +
Sbjct: 58 -------LIDGEDISGLSEAELYRLRRRMGMLFQ------------SGAL---FDSLTVF 95
Query: 212 --LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L + L + + + + L+ L+A +G + D A S G + R++
Sbjct: 96 ENVAFPLREHTRLSEEEIREIVLEKLEA--------VGLRGAE-DLYPAELSGGMKKRVA 146
Query: 270 LGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L + L DP+LLL DEPT LD D I L+ LG + ++++HD +
Sbjct: 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELG---LTSIMVTHDLDTAFAI 203
Query: 323 CTKIV 327
+I
Sbjct: 204 ADRIA 208
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 9e-17
Identities = 59/211 (27%), Positives = 93/211 (44%), Gaps = 52/211 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++LEN+SK Y G L V+ ++K+GE L+G +G GKTT LR+IAG E P SG
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
N+ K + F Q + + TV E AF ++ K E ++ E+
Sbjct: 61 GKDITNLPPHKRPVNTVF--QNYALFPHLTVFENI--AFGLRLKKLPKAEIKERVAEA-- 114
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+ L+ + +R + S G Q R
Sbjct: 115 --LDLVQ--LEGY--------------------------------ANRKPSQLSGGQQQR 138
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+++ + L+ +P +LLLDEP LDL + +
Sbjct: 139 VAIARALVNEPKVLLLDEPLGALDLKLRKDM 169
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 50/140 (35%), Positives = 71/140 (50%), Gaps = 16/140 (11%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+++ I+ + + + NL++E+GE AI+GP+GCGKSTLL+LI GLEKP GEV
Sbjct: 1 MALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 482 LLGEHNVL---PNY---FEQNQAEALDLDKTVLETVA------EAAEDWRIDDIKGLLGR 529
LL V P+ F Q +AL TVL+ VA ++ + K LL
Sbjct: 61 LLDGRPVTGPGPDIGYVF---QEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLEL 117
Query: 530 CNFKADMLDRKVSLLSGGEK 549
A D+ LSGG +
Sbjct: 118 VGL-AGFEDKYPHQLSGGMR 136
|
Length = 248 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 1e-16
Identities = 59/227 (25%), Positives = 97/227 (42%), Gaps = 37/227 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG-----QEEPDSG 152
++L +++ Y LKD++ ++ KGE L+G +G GK+T LR++ PD G
Sbjct: 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG 60
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V+ + + + + R V F I + + L
Sbjct: 61 EVLLDGKD---IYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLR----------L 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA-SFSSGWQMRMSLG 271
G L E LD +V + + + + DRL A S G Q R+ L
Sbjct: 108 HGIKLKEE--------------LDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLA 153
Query: 272 KILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +P++LLLDEPT+ LD IE L L K++ +VI++H+
Sbjct: 154 RALANEPEVLLLDEPTSALDPISTAKIEELIAEL-KKEYTIVIVTHN 199
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 1e-16
Identities = 62/228 (27%), Positives = 105/228 (46%), Gaps = 40/228 (17%)
Query: 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---KSNMKI 163
Y+ V LK +++ ++KGE VG +G NGAGKTT L+I++G +P SG V A +
Sbjct: 31 YREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRK 90
Query: 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223
FL + V +T ++ L +D L+ + +DL
Sbjct: 91 KFLRRIGVVFGQKT-------------QLWWDL--------PVIDSFYLLAAI---YDLP 126
Query: 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283
+ + LD L +++ L L D V S G +MR + LL +P++L L
Sbjct: 127 PARFKK-RLDEL-SELLDLEELL-------DTPVRQLSLGQRMRAEIAAALLHEPEILFL 177
Query: 284 DEPTNHLDLDTIE----WLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DEPT LD+ E +L+ Y ++ +++ SH ++ L +++
Sbjct: 178 DEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVL 225
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 2e-16
Identities = 28/57 (49%), Positives = 39/57 (68%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++EN+S Y G T L +V+ +K GE V LVG NG+GK+T LR IAG +P SG ++
Sbjct: 1 EIENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 67/252 (26%), Positives = 112/252 (44%), Gaps = 57/252 (22%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ N+SK+Y GV L DV+ ++KGE + L G +GAGKTT L+++ G P G V
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 157 AKSNM------KIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
A ++ ++ L Q+F + RTV E A +E+ GK ER +
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENV--ALP--LEVRGKKER---EI 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ V G L + L + PE S G
Sbjct: 115 QRRV------GAALRQVGLEHKA--------------DAFPE-------------QLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320
Q R+++ + ++ P LLL DEPT +LD D E + L K+ +++ +HD + +D
Sbjct: 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVD 201
Query: 321 QLCTKIVETEMG 332
++ +++ + G
Sbjct: 202 RVAHRVIILDDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 76.3 bits (189), Expect = 3e-16
Identities = 24/67 (35%), Positives = 42/67 (62%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+E+GE ++GPNG GK+TL+K+I+GL KP GE+ +
Sbjct: 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVL 60
Query: 485 EHNVLPN 491
++
Sbjct: 61 GKDIKKE 67
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.9 bits (193), Expect = 3e-16
Identities = 51/202 (25%), Positives = 88/202 (43%), Gaps = 55/202 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++EN+S Y + L+ V+ EV++GE V L+G NGAGKTT L+ I G P SG +I
Sbjct: 5 EVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+A+ + IA++ + + TV E + R ++A E
Sbjct: 65 EDITGLPPHERAR--LGIAYVPEGRRIFPRLTVEENL--------LLGAYARRDKEAQER 114
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
++++ ++L P L + ++ + S G Q
Sbjct: 115 DLEEV---------YELF--------------------PRL---KERRNQRAGTLSGGEQ 142
Query: 266 MRMSLGKILLQDPDLLLLDEPT 287
+++ + L+ P LLLLDEP+
Sbjct: 143 QMLAIARALMSRPKLLLLDEPS 164
|
Length = 237 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.7 bits (192), Expect = 4e-16
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 20/145 (13%)
Query: 423 SVVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ +NL F Y R +L IE+GE+ +IGPNG GKSTLLKL+ GL KP GEV
Sbjct: 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 482 LLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
L+ + QN + L TV + VA E+ + +
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVA 120
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
L + ++LDR LSGG+K
Sbjct: 121 EALELVGLE-ELLDRPPFNLSGGQK 144
|
Length = 235 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.0 bits (200), Expect = 4e-16
Identities = 90/408 (22%), Positives = 175/408 (42%), Gaps = 91/408 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVI 155
++++N++K + G VLK++++ +++GE +G++G +GAGK+ + ++ G + EP SG +I
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
Query: 156 KAKSNM-KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ K ++ + +V V + EE++ +++++ + + M
Sbjct: 61 YHVALCEKCGYVERPSKVGEPCPVCGGTLE--PEEVDFWNLSDKLRRRIRKRIAIM---- 114
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-DRLVA--------------- 258
LQR DT+ V + + E+G+ + R V
Sbjct: 115 --------LQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIA 166
Query: 259 -SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW----LEGYLGKQDVPMVIIS 313
S G + R+ L + L ++P L L DEPT LD T + LE + + MV+ S
Sbjct: 167 RDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H ++ L K + E G + EG + V A ++E + +++ E+E + +I
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKE-EGTPDEVV---AVFMEG--VSEVEKECEVEVGEPII 280
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFG 433
K+ + ++ + + +RG V + N+
Sbjct: 281 -----------------KVRNV----------SKRYISV---DRG----VVKAVDNVSL- 305
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ GE I+G +G GK+TL K+I G+ +P GEV
Sbjct: 306 ------------EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV 341
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 5e-16
Identities = 61/262 (23%), Positives = 112/262 (42%), Gaps = 56/262 (21%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L N+S +Y G LK+ + +GEKV ++G +G+GK+T L+++AG +P G++
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 156 KAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ I+ L+Q + S T+R+ A + + E + AL+
Sbjct: 397 LNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASD-----EELWAALQQ 450
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L L D L+ + + G RL S G +
Sbjct: 451 V----GLEKLLESA------------PDGLNTWLG----------EGGRRL----SGGER 480
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
R++L + LL D L LLDEPT LD + L + + +++++H L++
Sbjct: 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHA--EGKTLLMVTHRLRGLER 538
Query: 322 LCTKIVETEMGVSRTYEGNYSQ 343
+I+ + G EG +++
Sbjct: 539 -MDRIIVLDNG-KIIEEGTHAE 558
|
Length = 573 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 5e-16
Identities = 60/248 (24%), Positives = 106/248 (42%), Gaps = 42/248 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+ +N+SK + T + +++ V K GL+G NGAGK+T L++I G P SG
Sbjct: 2 ETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG------ 55
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+I F + + + E + L +A +++
Sbjct: 56 ---EIIFDGHPWTRKDLHKI-----GSLIESPPLYENL--------TARENL-------- 91
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K L D+++ +++ + T + G + FS G + R+ + LL P
Sbjct: 92 -------KVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIAIALLNHP 143
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335
LL+LDEPTN LD I+ L + +Q + +++ SH + + QL I GV
Sbjct: 144 KLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLG 203
Query: 336 TYEGNYSQ 343
Y+G ++
Sbjct: 204 -YQGKINK 210
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 6e-16
Identities = 42/147 (28%), Positives = 72/147 (48%), Gaps = 28/147 (19%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ ++ + + DR++ + +L + RGE AI+G +G GKSTLL+LI+GL +P GE+L+
Sbjct: 8 LIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILI 67
Query: 484 -GEHNVLPNYFEQNQAEALDLDK---------------TVLETVA----EAAE--DWRID 521
GE + + ++ E ++ K TV E VA E + + I
Sbjct: 68 DGE-----DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIR 122
Query: 522 DIKGL-LGRCNFKADMLDRKVSLLSGG 547
++ + L + D S LSGG
Sbjct: 123 ELVLMKLELVGLRGAAADLYPSELSGG 149
|
Length = 263 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 6e-16
Identities = 65/328 (19%), Positives = 125/328 (38%), Gaps = 79/328 (24%)
Query: 15 FSTLQPRFT-PFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSIAKAQSDVESLFSSS 73
F+ L F P K R+ + +
Sbjct: 415 FNMLAGYFISPITRLSQLWTDFQQAKVALERL---------------------GDILDTP 453
Query: 74 ADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGV 131
++ +K + + ++ EN+S Y VL+D++ E+ GEKV +VG
Sbjct: 454 PEQEGDKTLIHL------PKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGR 507
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREE 181
+G+GK+T L+++ G +P G ++ ++ + ++ Q+ S ++R E
Sbjct: 508 SGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQD-PFLFSGSIR-E 565
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241
++ E E + +A + A EF + + DT
Sbjct: 566 NIALGNPEA----TDEEIIEAAQLAG---------AHEF----IENLPMGYDT------- 601
Query: 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301
+G A+ S G + R++L + LL P +LLLDE T+ LD +T +
Sbjct: 602 ---PVGEGG-------ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 302 LGK--QDVPMVIISHDRAFLDQLCTKIV 327
L + Q ++II+H + + + +I+
Sbjct: 652 LLQILQGRTVIIIAHRLSTI-RSADRII 678
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 6e-16
Identities = 64/252 (25%), Positives = 105/252 (41%), Gaps = 62/252 (24%)
Query: 95 SSGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++ +S +Y G L+ V++ V GE+V LVG +GAGK+T L ++ G +P G+
Sbjct: 319 APSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378
Query: 154 V---------IKAKSNMK-IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
+ A S IA++ Q F ++ E ++
Sbjct: 379 IAVNGVPLADADADSWRDQIAWVPQHPFLFAGTI---------------------AENIR 417
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVAS 259
A A D ++ + LD A + + L +G + G L
Sbjct: 418 LARPDASDAE------------IREALERAGLDEFVAALPQGLDTPIG---EGGAGL--- 459
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G R++L + L+D LLLLDEPT HLD +T +E L + V ++++H
Sbjct: 460 -SGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTV--LLVTHR 516
Query: 316 RAFLDQLCTKIV 327
A L +IV
Sbjct: 517 LALA-ALADRIV 527
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 7e-16
Identities = 29/75 (38%), Positives = 44/75 (58%), Gaps = 4/75 (5%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y +D + +L I GEK AI+G +G GKSTLLKL++GL KP+ G +L
Sbjct: 472 IEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL 531
Query: 483 LGEHNVLPNYFEQNQ 497
L ++ N +
Sbjct: 532 LDGVDL--NDIDLAS 544
|
Length = 709 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 7e-16
Identities = 59/259 (22%), Positives = 115/259 (44%), Gaps = 69/259 (26%)
Query: 92 SSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
+ ++ N+S +Y G L +V+ ++ GEKV ++G G+GK+T L+++ G +P
Sbjct: 458 PRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQP 517
Query: 150 DSGNVIKAKSNMK----------IAFLSQE---FEVSMSRTVRE--EFMSAFKEEMEIAG 194
G+V+ +++ I ++ Q+ F T+R+ + + ++
Sbjct: 518 TEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLF----YGTLRDNIALGAPYADD----- 568
Query: 195 KLERVQKALESA-VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
E + +A E A V + + R D D+ + G
Sbjct: 569 --EEILRAAELAGVT--EFVRRHPDGLDMQ-------------------------IGERG 599
Query: 254 DRLVASFSSGWQMRM-SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
L SG Q + +L + LL+DP +LLLDEPT+ +D + + L+ +L +
Sbjct: 600 RSL-----SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT-- 652
Query: 309 MVIISHDRAFLDQLCTKIV 327
+V+++H + LD L +I+
Sbjct: 653 LVLVTHRTSLLD-LVDRII 670
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 1e-15
Identities = 40/147 (27%), Positives = 63/147 (42%), Gaps = 33/147 (22%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + ++LF +LT+ GE A++G NG GK+TLLK IMGL PR G +
Sbjct: 2 EVENLNAGYGKSQILFG-VSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFD 60
Query: 485 EHNV---------------LPNYFEQNQAEALDLDKTVLE-------TVAEAAEDWRIDD 522
++ +P + + + TV E A R++
Sbjct: 61 GRDITGLPPHERARAGIGYVP------EGRRIFPELTVEENLLLGAYARRRAKRKARLER 114
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ L R + + LSGGE+
Sbjct: 115 VYELFPRL---KERRKQLAGTLSGGEQ 138
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 59/206 (28%), Positives = 88/206 (42%), Gaps = 55/206 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ N+ K Y V+ +++ V++GE GL+G NGAGKTT LR++ G PD+G++
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREE---FMSAFKEEMEIAGKLERVQKALES 205
+ ++ + Q + TVRE F F + A V L
Sbjct: 68 GEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG--LSAAAARALVPPLL-- 123
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
EF L+ KA DAKV +L S G +
Sbjct: 124 -------------EFAKLENKA--------DAKVGEL------------------SGGMK 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L+ DPD+L+LDEPT LD
Sbjct: 145 RRLTLARALVNDPDVLVLDEPTTGLD 170
|
Length = 306 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 2e-15
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
I+N+ F Y+ + + +L + GE A+ G NG GK+TL K++ GL K G +LL
Sbjct: 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLN 60
Query: 485 EHNV 488
+
Sbjct: 61 GKPI 64
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 76.1 bits (188), Expect = 2e-15
Identities = 56/217 (25%), Positives = 100/217 (46%), Gaps = 31/217 (14%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSNMKIAFLSQE 169
+LK V VK+GE ++G NG+GK+T I G E G ++ ++
Sbjct: 19 ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDIL------- 71
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
E+S R AF+ +EI G L +A++ +R A+
Sbjct: 72 -ELSPDERARAGIFLAFQYPVEIPGV--TNSDFLRAAMNA--------------RRGARG 114
Query: 230 VNLDTLDAKVSKLMPELGFTADDGDRLV-ASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+ + + ++ + LG + +R V FS G + R + ++LL +P L +LDEP +
Sbjct: 115 ILPEFIK-ELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 289 HLDLDTIEWL-EG--YLGKQDVPMVIISHDRAFLDQL 322
LD+D ++ + EG L ++ ++II+H + LD +
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYI 210
|
Length = 251 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 3e-15
Identities = 68/243 (27%), Positives = 107/243 (44%), Gaps = 49/243 (20%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
LE +S S+ G L D++ V GE ++G NGAGKTT + +I G+ PD G+V
Sbjct: 4 YLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGG 63
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ +IA Q+ V + TV E +E+A ++ A
Sbjct: 64 TDLTGLPEHQIARAGIGRKFQKPTVFENLTVF--------ENLELALPRDKSVFAS---- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L RL + ++ +++ +G AD+ DRL S G +
Sbjct: 112 ----LFFRL--------SAEEK-------DRIEEVLETIGL-ADEADRLAGLLSHGQKQW 151
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ +G +L+QDP LLLLDEP + + T E L+ GK V V++ HD F+ +
Sbjct: 152 LEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSV--VVVEHDMEFVRSIA 209
Query: 324 TKI 326
K+
Sbjct: 210 DKV 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 75.5 bits (186), Expect = 3e-15
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 52/254 (20%)
Query: 101 ENISKSYKGV---------TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+S Y TVL +V+ +K GE V L+G +G GK+T R++ G E P
Sbjct: 7 SGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQ 66
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
GNV ++ + +++ R + AF+ ++++ Q ++ SAV+
Sbjct: 67 GNV---------SWRGE----PLAKLNRAQ-RKAFRRDIQMV-----FQDSI-SAVNPRK 106
Query: 212 LMGRLLDE----FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ ++ E L + + A+ S+++ + D+ S G R
Sbjct: 107 TVREIIREPLRHLLSLDKAERL-------ARASEMLRAVDLDDSVLDKRPPQLSGGQLQR 159
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+ L + L +P LL+LDE ++LDL I L+ + + I+HD +++ C
Sbjct: 160 VCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFC 219
Query: 324 T--------KIVET 329
+IVET
Sbjct: 220 QRVMVMDNGQIVET 233
|
Length = 268 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-15
Identities = 67/231 (29%), Positives = 106/231 (45%), Gaps = 60/231 (25%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++S V LEN+S S+ VL DV+ E+K G+ + L+G NGAGK+T +R++ G PD G
Sbjct: 1 MTSLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG- 59
Query: 154 VIKAKSNMKIAFLSQE--FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
VIK ++I ++ Q+ + ++ TV F+ L D
Sbjct: 60 VIKRNGKLRIGYVPQKLYLDTTLPLTV-NRFLR------------------LRPGTKKED 100
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
++ L ++ QA +L +DA + KL S G R+ L
Sbjct: 101 ILPAL--------KRVQAGHL--IDAPMQKL------------------SGGETQRVLLA 132
Query: 272 KILLQDPDLLLLDEPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHD 315
+ LL P LL+LDEPT +D+ D I+ L L ++++SHD
Sbjct: 133 RALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELD---CAVLMVSHD 180
|
Length = 251 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 4e-15
Identities = 65/254 (25%), Positives = 99/254 (38%), Gaps = 62/254 (24%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++EN+SK Y G LK++ + GE V ++G +GAGK+T LR I EP SG+++
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 157 A-------------KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME-IAGKL-----E 197
K +I + Q + + TV E + L E
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
++AL L+ L + Q D L
Sbjct: 122 DKERALS-----------ALERVGLADKAYQRA--DQL---------------------- 146
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIIS- 313
S G Q R+++ + L Q PDL+L DEP LD T + + YL K+D VII+
Sbjct: 147 ---SGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINL 203
Query: 314 HDRAFLDQLCTKIV 327
H + +IV
Sbjct: 204 HQVDLAKKYADRIV 217
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 6e-15
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 25/147 (17%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++++NL Y A +L IERGE I+G +G GKSTL +L+ GLEKP G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 481 VLLGEHNVLPNYFE-----------QNQAEALDLDKTVLETVAEAAEDWRIDDIKG---- 525
+LL + P Q+ +L+ +TV ++E R +
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEP---LRPHGLSKSQQR 120
Query: 526 ---LLGRCNFKADMLDRKVSLLSGGEK 549
LL + LDR+ LSGG++
Sbjct: 121 IAELLDQVGLPPSFLDRRPHELSGGQR 147
|
Length = 252 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 6e-15
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 48/236 (20%)
Query: 103 ISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK 162
+ + + ++D+++E+ KGE VG +G NGAGK+T L+++ G P SG V + N K
Sbjct: 30 FHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKV---RVNGK 86
Query: 163 IAFLSQEFEVSMSRTV-----REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F +E + V + + + +E+ + + + +D + +L
Sbjct: 87 DPFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAE--RLDFLTEIL 144
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
D L+ + + +L S G +MR L LL
Sbjct: 145 D----------------LEGFLKWPVRKL--------------SLGQRMRAELAAALLHP 174
Query: 278 PDLLLLDEPTNHLDLDTI------EWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
P +L LDEPT + LD E+L+ Y ++ +++ +H + LC +++
Sbjct: 175 PKVLFLDEPT--VGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVL 228
|
Length = 325 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 7e-15
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 21/141 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + + NL I GE ++GP+GCGK+T L++I GLE+P G + +G
Sbjct: 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIG 60
Query: 485 EHNV--LPNYFEQN-----QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLG 528
+V LP +++ Q AL TV + +A + D R+ ++ LL
Sbjct: 61 GRDVTDLPPK-DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ 119
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+LDRK LSGG++
Sbjct: 120 ----IEHLLDRKPKQLSGGQR 136
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 7e-15
Identities = 63/243 (25%), Positives = 96/243 (39%), Gaps = 67/243 (27%)
Query: 113 LKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAKSN 160
L D T ++ E G+ G +GAGK+T LR IAG E+PD G ++ + K N
Sbjct: 10 LPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN 69
Query: 161 M-----KIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ KI + Q++ + VRE F K E V + L
Sbjct: 70 LPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRKRNRED---RISVDELL---------- 116
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ LD L +R A S G + R++L +
Sbjct: 117 --------------DLLGLDHL-----------------LNRYPAQLSGGEKQRVALARA 145
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ----DVPMVIISHDRAFLDQLCTKIVET 329
L P+LLLLDEP + LD L L + ++P++ ++HD + + L +IV
Sbjct: 146 LAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVM 205
Query: 330 EMG 332
E G
Sbjct: 206 EDG 208
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 7e-15
Identities = 57/204 (27%), Positives = 91/204 (44%), Gaps = 51/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ L +SKSY V+ D+++ + +GE GL+G NGAGK+T R++ G PD G +
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 156 ------KAK-SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ-KALESAV 207
+A+ + + I + Q + TVRE + + G+ + + +E+ +
Sbjct: 65 GEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLL--------VFGRYFGMSTREIEAVI 116
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
L EF L+ KA D VA S G + R
Sbjct: 117 PS-------LLEFARLESKA--------------------------DVRVALLSGGMKRR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
++L + L+ DP LL+LDEPT LD
Sbjct: 144 LTLARALINDPQLLILDEPTTGLD 167
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 8e-15
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ ++N+ Y A +L++E GE A++GP+GCGKSTLL++I GLE+P GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 481 VLLG 484
VL+
Sbjct: 61 VLVD 64
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 8e-15
Identities = 85/401 (21%), Positives = 147/401 (36%), Gaps = 99/401 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+ + I KS+ V LK V V GE L+G NGAGK+T +++++G EP G +
Sbjct: 6 ISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITIN 65
Query: 156 ---------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
K + + I + QE V TV E G+ +K
Sbjct: 66 NINYNKLDHKLAAQLGIGIIYQELSVIDELTVLENLY---------IGRHL-TKKVCGVN 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ D M R A+ L + KV D D VA+ S +
Sbjct: 116 IIDWREM-----------RVRAAMMLLRVGLKV------------DLDEKVANLSISHKQ 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYLGKQDVPMVIISHDRAFLDQLC 323
+ + K L+ D ++++DEPT+ L +++L L K+ +V ISH A + ++C
Sbjct: 153 MLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRIC 212
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+ V++ + + S + D+ N
Sbjct: 213 DRYT-----------------VMKDGSSVCS---------GMV---SDVSN--------- 234
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV-TIKNLEFGYEDRLLFNR 442
+ RL +++ F + V ++N+ DR
Sbjct: 235 ------DDIVRLMVGRELQNRFNAMK-----ENVSNLAHETVFEVRNVT--SRDRKKVRD 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ ++ RGE G G G++ L+ + G++K GGE+ L
Sbjct: 282 ISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
|
Length = 510 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 1e-14
Identities = 57/208 (27%), Positives = 83/208 (39%), Gaps = 56/208 (26%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KA 157
N+S G T+L DV+ ++ GE V ++G NGAGK+T LR ++G+ PDSG V +
Sbjct: 6 RNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRP 65
Query: 158 KSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ A L Q +S TV E+
Sbjct: 66 LADWSPAELARRRAVLPQHSSLSFPFTVE-----------EVVA---------------- 98
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
MGR +A+ L V+ + ++ R S G Q R+ L
Sbjct: 99 --MGRA----PHGLSRAEDDAL------VAAALAQVDLAH-LAGRDYPQLSGGEQQRVQL 145
Query: 271 GKILLQ------DPDLLLLDEPTNHLDL 292
++L Q P LLLDEPT+ LDL
Sbjct: 146 ARVLAQLWEPDGPPRWLLLDEPTSALDL 173
|
Length = 258 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 1e-14
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 37/204 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
N++ S + + +++ + GE + + G NG GKTT LRI+AG PDSG
Sbjct: 3 ARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG------- 55
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
EV + T E + G L ++ L SA++++ +
Sbjct: 56 -----------EVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL-SALENLHFWAAIHGG 103
Query: 220 FDLLQRKA-QAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
A AV L GF D A S+G Q R++L ++ L
Sbjct: 104 AQRTIEDALAAVGLT-------------GFE----DLPAAQLSAGQQRRLALARLWLSRA 146
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYL 302
L +LDEPT LD + L G L
Sbjct: 147 PLWILDEPTTALDKAGVALLAGLL 170
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 1e-14
Identities = 60/211 (28%), Positives = 95/211 (45%), Gaps = 51/211 (24%)
Query: 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++S Y G VL V+ ++ GE+V ++G +G+GK+T L +AG +P G V
Sbjct: 334 TLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGEVT 393
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKAL 203
+ + +++ +Q+ + TVRE A + + E+ LERV A
Sbjct: 394 LDGVPVSSLDQDEVRRRVSVCAQDAHL-FDTTVRENLRLARPDATDEELWAALERVGLA- 451
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + L D LDT+ + E G A S G
Sbjct: 452 -------DWLRALPD------------GLDTV-------LGEGG----------ARLSGG 475
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ R++L + LL D +LLLDEPT HLD +T
Sbjct: 476 ERQRLALARALLADAPILLLDEPTEHLDAET 506
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 1e-14
Identities = 53/207 (25%), Positives = 90/207 (43%), Gaps = 50/207 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SG 152
G++++++ +Y TVL D++ E++ GE + L+G +G GKTT LR IAG + +G
Sbjct: 3 CGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG 62
Query: 153 NVIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ A ++ +A L Q + + V + AF
Sbjct: 63 RIAIADRDLTHAPPHKRGLALLFQNYALFPHLKVEDNV--AF------------------ 102
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
L + + + D+ +R A A+ L L D L A S G
Sbjct: 103 ------GLRAQKMPKADIAERVADALKLVGL--------------GDAAAHLPAQLSGGM 142
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLD 291
Q R+++ + + +PD+LLLDEP + LD
Sbjct: 143 QQRIAIARAIAIEPDVLLLDEPLSALD 169
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 1e-14
Identities = 57/251 (22%), Positives = 99/251 (39%), Gaps = 85/251 (33%)
Query: 98 VKLENISKSY---------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
++++N+ K + + V + V++ +K+GE +GLVG +G GK+T R+I G EE
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
P SG ++ I LS KEE + ERV + LE
Sbjct: 65 PTSGEILFEG--KDITKLS-------------------KEE-----RRERVLELLE---- 94
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++G + R S G + R+
Sbjct: 95 ------------------------------------KVGLPEEFLYRYPHELSGGQRQRI 118
Query: 269 SLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQ 321
+ + L +P L++ DEP + LD L+ ++ L+ LG + + ISHD + +
Sbjct: 119 GIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG---LTYLFISHDLSVVRY 175
Query: 322 LCTKIVETEMG 332
+ +I +G
Sbjct: 176 ISDRIAVMYLG 186
|
Length = 268 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 69/268 (25%), Positives = 113/268 (42%), Gaps = 80/268 (29%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
S ++++N+ K + G TVL + EVK GE V ++G +G+GKTT LR I E+P++G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 155 -----------IKAKSNM------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
+ + + + F+ Q F + RTV E I G +
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENI---------IEGPVI 112
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+ E A A+ +L+ ++G +
Sbjct: 113 VKGEPKEEAT-----------------------------ARARELLAKVGLAGKE-TSYP 142
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+++ + L P+++L DEPT+ LD L+TI L ++ MV
Sbjct: 143 RRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIR----QLAQEKRTMV 198
Query: 311 IISH---------DRA-FLDQLCTKIVE 328
I++H DRA F+DQ +IVE
Sbjct: 199 IVTHEMSFARDVADRAIFMDQ--GRIVE 224
|
Length = 250 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 2e-14
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 13/99 (13%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ +N+S SY + VLKDV+ +K GEKV +VG +G+GK+T L+++ +P SG +
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 155 --------IKAKSNMK-IAFLSQEFEVSMSRTVREEFMS 184
+ +S K IA++ Q+ + S T+RE +S
Sbjct: 61 IDGVDLRDLDLESLRKNIAYVPQDPFL-FSGTIRENILS 98
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 2e-14
Identities = 55/204 (26%), Positives = 86/204 (42%), Gaps = 48/204 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ EN+SK Y + DV +++GE + L+G +G+GKTT L++I EP SG + I
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 157 AKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ KI ++ Q+ + TV E A ++ K ++A E
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI--ATVPKLLGWDKERIKKRADEL-- 117
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+DL+G LD + R EL S G Q R
Sbjct: 118 --LDLVG--LDPSEYADRYPH----------------EL--------------SGGQQQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD 291
+ + + L DP +LL+DEP LD
Sbjct: 144 VGVARALAADPPILLMDEPFGALD 167
|
Length = 309 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-14
Identities = 61/230 (26%), Positives = 106/230 (46%), Gaps = 53/230 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+K+EN+SK +K LK+V+ EV++G+ ++G G+GK+ L IAG +PDSG ++
Sbjct: 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLN 59
Query: 156 -KAKSNMK-----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
K +N+ I+++ Q + + TV + A+ + K E +K LE
Sbjct: 60 GKDITNLPPEKRDISYVPQNYALFPHMTVYKNI--AYGLKKRKVDKKEIERKVLE----- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ +L LL RK + S G Q R++
Sbjct: 113 ---IAEMLGIDHLLNRK------------------------------PETLSGGEQQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + L+ +P +LLLDEP + LD+ T E L+ + V ++ ++HD
Sbjct: 140 IARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHD 189
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 2e-14
Identities = 64/247 (25%), Positives = 102/247 (41%), Gaps = 58/247 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +EN+SKSY VL DV+ ++ KG ++G NGAGK+T L +++ + DSG +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 158 KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K++ L QE ++ TVR+ + F G+ Q L
Sbjct: 62 GLELTSTPSKELAKKLSILKQENHINSRLTVRD--LVGF-------GRFPYSQGRLTK-- 110
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+D ++ ++ L D DR + S G + R
Sbjct: 111 EDRRIINEAIEYLHL---------------------------EDLSDRYLDELSGGQRQR 143
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ +L QD D +LLDEP N+LD + + L LGK +V++ HD F
Sbjct: 144 AFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKT---IVVVLHDINFAS 200
Query: 321 QLCTKIV 327
IV
Sbjct: 201 CYSDHIV 207
|
Length = 252 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-14
Identities = 58/244 (23%), Positives = 95/244 (38%), Gaps = 65/244 (26%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM----- 161
+++LK V VK+GE V +VG +G+GK+T L ++AG ++P SG V + +
Sbjct: 23 LSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDAR 82
Query: 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ F+ Q F + + T E +E+ G+
Sbjct: 83 AALRARHVGFVFQSFHLIPNLTALENVALP----LELRGESSA----------------- 121
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGK 272
D + +AV L G RL A S G Q R++L +
Sbjct: 122 --DSRAGAKALLEAVGL--------------------GKRLTHYPAQLSGGEQQRVALAR 159
Query: 273 ILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVE 328
PD+L DEPT +LD T + L ++ +V+++HD L C + +
Sbjct: 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ-LAARCDRQLR 218
Query: 329 TEMG 332
G
Sbjct: 219 LRSG 222
|
Length = 228 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 74.9 bits (184), Expect = 2e-14
Identities = 64/208 (30%), Positives = 90/208 (43%), Gaps = 50/208 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+ + ++S + TVL V V++G VGLVG NGAGKTT LR I G P +G V
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
Query: 155 ---IKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S + ++A + Q+ +S VR+ +E
Sbjct: 64 GDDVEALSARAASRRVASVPQDTSLSFEFDVRQ---------------------VVE--- 99
Query: 208 DDMDLMGRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
MGR FD +T A V + M G A DR V S S G +
Sbjct: 100 -----MGRTPHRSRFDTWT--------ETDRAAVERAMERTG-VAQFADRPVTSLSGGER 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLD 293
R+ L + L Q +LLLDEPT LD++
Sbjct: 146 QRVLLARALAQATPVLLLDEPTASLDIN 173
|
Length = 402 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-14
Identities = 95/406 (23%), Positives = 161/406 (39%), Gaps = 105/406 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ +ISK Y GV VLK + + + GE L+G NGAGK+T ++IIAG PDSG + I
Sbjct: 12 LCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIG 71
Query: 157 AKS----------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ I + QE + + +V+E + + K++++ AL
Sbjct: 72 GNPCARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQ 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+D LD + A +L+ D ++ +++
Sbjct: 132 LD--------LD--------SSAGSLEVADRQIVEIL----------------------- 152
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLC 323
+ L++D +L+LDEPT L E L L Q V +V ISH + QL
Sbjct: 153 -----RGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLA 207
Query: 324 TKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383
+I V R +G A + ++ T D+I + A
Sbjct: 208 DRI-----SVMR--DG----------------TIALSGKTADLS-TDDIIQAITPAAREK 243
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEF-GYEDRLLFNR 442
S+++K +E P R+Q P V+T+++L G+ +
Sbjct: 244 SLSASQKL--------WLELPGNRRQQAAGAP--------VLTVEDLTGEGFRN------ 281
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+L + GE + G G G++ L + + GL RGG ++L +
Sbjct: 282 ISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEI 327
|
Length = 510 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.2 bits (177), Expect = 3e-14
Identities = 55/202 (27%), Positives = 88/202 (43%), Gaps = 50/202 (24%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI----- 155
+N++K+YKG V++DV+ V GE VGL+G NGAGKTT ++ G D+GN+I
Sbjct: 7 KNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDED 66
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
A++ I +L QE + +V + M+ ++I L Q+
Sbjct: 67 ISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAV----LQIRDDLSAEQRE------- 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
D L++EF + L +G S S G + R+
Sbjct: 116 -DRANELMEEFH-----------------IEHLRDSMG----------QSLSGGERRRVE 147
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
+ + L +P +LLDEP +D
Sbjct: 148 IARALAANPKFILLDEPFAGVD 169
|
Length = 241 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 4e-14
Identities = 70/256 (27%), Positives = 111/256 (43%), Gaps = 70/256 (27%)
Query: 98 VKLENISKSY----KGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K+ N+SK Y +GV D V+ EVK+GE G+VG +GAGKTT +IIAG EP SG
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG 339
Query: 153 NV-----------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195
V + ++ I L QE+++ RTV + A E+
Sbjct: 340 EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL----- 394
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG-- 253
+L + KA + TL +GF +
Sbjct: 395 -----------------------PDELARMKA----VITLKM--------VGFDEEKAEE 419
Query: 254 --DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPM-- 309
D+ S G + R++L ++L+++P +++LDEPT +D T + + K M
Sbjct: 420 ILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQ 479
Query: 310 --VIISHDRAFLDQLC 323
+I+SHD F+ +C
Sbjct: 480 TFIIVSHDMDFVLDVC 495
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 4e-14
Identities = 35/164 (21%), Positives = 59/164 (35%), Gaps = 57/164 (34%)
Query: 137 TTQLRIIAGQEEPDSGNVI-----------KAKSNMKIAFLSQEFEVSMSRTVREE-FMS 184
+T L++I G +P SG ++ + +I + Q+ ++ TVRE F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244
+E + R ++ALE
Sbjct: 61 LRDKEAD-----ARAEEALE---------------------------------------- 75
Query: 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
+G V + S G + R+++ + LL+ P LLLLDEPT
Sbjct: 76 RVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 4e-14
Identities = 25/66 (37%), Positives = 43/66 (65%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++I N+ F Y +++ + +L +++GEK A++G +G GKSTLL+L+ G KP+ GE+
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 483 LGEHNV 488
L V
Sbjct: 61 LDGVPV 66
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 7e-14
Identities = 70/246 (28%), Positives = 105/246 (42%), Gaps = 54/246 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
L+ +S S+ G L D+++ V GE L+G NGAGKTT + +I G+ P G V
Sbjct: 7 YLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDG 66
Query: 155 ---IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ +IA Q+ V + TVR E +E+A ++ A
Sbjct: 67 DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVR--------ENLELALNRDKSVFAS--- 115
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGDRLVASFSSGW 264
L RL E + +D L L D+ DRL A S G
Sbjct: 116 -----LFARLRAE--------ERRRIDEL----------LATIGLGDERDRLAALLSHGQ 152
Query: 265 QMRMSLGKILLQDPDLLLLDEP----TNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
+ + +G +L QDP LLLLDEP T+ T E L+ GK + +++ HD F+
Sbjct: 153 KQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI--LVVEHDMGFVR 210
Query: 321 QLCTKI 326
++ K+
Sbjct: 211 EIADKV 216
|
Length = 249 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 7e-14
Identities = 58/203 (28%), Positives = 83/203 (40%), Gaps = 52/203 (25%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
++NI K + T LKD++ VKKGE V L+G +G GKTT LRIIAG E +G + +
Sbjct: 6 SIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGG 65
Query: 157 --------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
K + I F Q + + + TV + A+ + G+ E ++ E
Sbjct: 66 RDITRLPPQKRDYGIVF--QSYALFPNLTVADNI--AYGLKNRGMGRAEVAERVAE---- 117
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
LLD L + S G Q R+
Sbjct: 118 -------LLDLVGLP---------------------------GSERKYPGQLSGGQQQRV 143
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + L P LLLLDEP + LD
Sbjct: 144 ALARALATSPGLLLLDEPLSALD 166
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 7e-14
Identities = 57/213 (26%), Positives = 97/213 (45%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
V+ +N++ Y G VL+D++ ++ GE V LVG +G+GK+T + +I + DSG +
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKLERVQK 201
S +I +SQ+ F + TV E IA G+ ++
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLF----NDTVAE----------NIAYGRPGATRE 106
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
+E A A+A N + +PE G+ G+R V S
Sbjct: 107 EVEEA--------------------ARAANAHEFIME----LPE-GYDTVIGERGV-KLS 140
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + LL+DP +L+LDE T+ LD ++
Sbjct: 141 GGQRQRIAIARALLKDPPILILDEATSALDTES 173
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 69.4 bits (171), Expect = 1e-13
Identities = 46/150 (30%), Positives = 67/150 (44%), Gaps = 29/150 (19%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KNL Y +A +L+IE+GE AI+GP+G GKSTLL ++ GL++P GE
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 481 VLLGEHNVLPNYFEQNQAEAL---------------DLDKTVLETVAEAAE------DWR 519
V + ++ E+ A DL T LE V R
Sbjct: 61 VRVDGTDIS-KLSEKELAAFRRRHIGFVFQSFNLLPDL--TALENVELPLLLAGVPKKER 117
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + LL R D L+ S LSGG++
Sbjct: 118 RERAEELLERVGLG-DRLNHYPSELSGGQQ 146
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 1e-13
Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 19/140 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ Y + + +L I+ GE ++GP+GCGK+TLL+LI G E P GE+LL
Sbjct: 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLD 60
Query: 485 E---HNVLPNYFEQN---QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
N+ P+ N Q AL TV E +A +A R+ + L+
Sbjct: 61 GKDITNLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQL 120
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+ +RK S LSGG++
Sbjct: 121 EGYA----NRKPSQLSGGQQ 136
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 1e-13
Identities = 26/60 (43%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 427 IKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++N+ F Y + + +IE GE AIIGP+G GKSTL +LI+GL +P G V L
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLD 62
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 1e-13
Identities = 54/232 (23%), Positives = 99/232 (42%), Gaps = 53/232 (22%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN++ SY + VLKD+ + +K GE V +VG GAGKTT + ++ +P G +
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 155 ---------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
K+ +M I + Q+ S T+ E
Sbjct: 63 DGIDIRDISRKSLRSM-IGVVLQD-TFLFSGTIMENI----------------------- 97
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK-LMPELGFTADDGDRLVASFSSGW 264
+GR + + A+ K+ LG ++G L S G
Sbjct: 98 ------RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLG---ENGGNL----SQGE 144
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
+ +++ + +L+DP +L+LDE T+++D +T + ++ L K + +II+H
Sbjct: 145 RQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAH 196
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 1e-13
Identities = 57/242 (23%), Positives = 103/242 (42%), Gaps = 34/242 (14%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + + R +R F ++ + L + +E+ + L
Sbjct: 63 GNHFDFSKTPSDKAI---RDLRRNVGMVF-QQYNLWPHLTVQENLIEAPCRVLGLSKD-- 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
Q A+A KL+ L DR S G Q R+++ + L+ +
Sbjct: 117 ------QALARAE----------KLLKRLRL-KPYADRYPLHLSGGQQQRVAIARALMME 159
Query: 278 PDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
P +LL DEPT LD + I+ L + VI++H+ + +++V E
Sbjct: 160 PQVLLFDEPTAALDPEITAQIVSIIKELAE----TGITQVIVTHEVEVARKTASRVVYME 215
Query: 331 MG 332
G
Sbjct: 216 NG 217
|
Length = 242 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 53/211 (25%), Positives = 92/211 (43%), Gaps = 48/211 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+++E ++KS+ + ++++EV GE GL+G NGAGKTT R+I G EP G +
Sbjct: 1 MALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 155 -----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKALESAVD 208
+ + +I +L +E + TV ++ K E+ G +QK L+
Sbjct: 61 WNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQ----LKYLAELKGMPKAEIQKKLQ---- 112
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L+R L+ + K K + S G Q ++
Sbjct: 113 ------------AWLER------LEIVGKKTKK---------------IKELSKGNQQKI 139
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLE 299
++ +P+LL+LDEP + LD +E L+
Sbjct: 140 QFISAVIHEPELLILDEPFSGLDPVNVELLK 170
|
Length = 300 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 2e-13
Identities = 30/66 (45%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y ++ + +LTI GEK AIIG G GKSTLLKL+ GL KP G VL
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVL 62
Query: 483 LGEHNV 488
L ++
Sbjct: 63 LDGTDI 68
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 2e-13
Identities = 54/205 (26%), Positives = 87/205 (42%), Gaps = 49/205 (23%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-I 155
++ EN++K Y G + ++ E+ KGE + L+G +G+GKTT +++I EP SG + I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 156 KAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
+ KI ++ Q+ + TV +E + + KL + K
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTV--------EENIALVPKLLKWPKE---- 108
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + +A D L A V + F DR S G Q
Sbjct: 109 -----------------KIRERA---DELLALVG--LDPAEF----ADRYPHELSGGQQQ 142
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+ + + L DP LLL+DEP LD
Sbjct: 143 RVGVARALAADPPLLLMDEPFGALD 167
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 71.4 bits (176), Expect = 2e-13
Identities = 56/211 (26%), Positives = 95/211 (45%), Gaps = 57/211 (27%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+NISK + + + L +V+ + GE G++G +GAGK+T +R I E P SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200
V+ ++ +I + Q F + SRTV + A +E+AG
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV--ALP--LELAGT----- 112
Query: 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260
KA+ + A+V++L+ +G +D DR A
Sbjct: 113 ------------------------PKAE------IKARVTELLELVGL-SDKADRYPAQL 141
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L +P +LL DE T+ LD
Sbjct: 142 SGGQKQRVAIARALASNPKVLLCDEATSALD 172
|
Length = 343 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-13
Identities = 56/205 (27%), Positives = 91/205 (44%), Gaps = 50/205 (24%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ V L N++K+Y V + KD+ ++ +GE V VG +G GK+T LR+IAG E+ SG++
Sbjct: 2 ASVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLF 61
Query: 156 KAKSNMKIAFLSQEFEVS-MSRTVREEFMS-------AFKEEMEIAGKLERVQKA-LESA 206
+ M +V R V F S + E M KL +K +
Sbjct: 62 IGEKRMN--------DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQR 113
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
V+ + +L LL RK +A+ S G +
Sbjct: 114 VNQ---VAEVLQLAHLLDRKPKAL------------------------------SGGQRQ 140
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G+ L+ +P + LLDEP ++LD
Sbjct: 141 RVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 69.0 bits (170), Expect = 3e-13
Identities = 37/133 (27%), Positives = 53/133 (39%), Gaps = 30/133 (22%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY--------- 492
+ ++ GE +IGPNG GK+TL LI G +P G VL ++ LP +
Sbjct: 20 SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79
Query: 493 -FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA---------------DM 536
F Q +L TVLE V AA+ + R + D+
Sbjct: 80 TF-QIPRLFPEL--TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL 136
Query: 537 LDRKVSLLSGGEK 549
DR LS G++
Sbjct: 137 ADRPAGELSYGQQ 149
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.8 bits (172), Expect = 3e-13
Identities = 44/145 (30%), Positives = 60/145 (41%), Gaps = 25/145 (17%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL R L + +LT+ GE AI+GPNG GKSTLL+ + G P GEV L
Sbjct: 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRL 61
Query: 484 GEHN--------------VLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG--LL 527
VLP Q +L TV E VA + + L+
Sbjct: 62 NGRPLADWSPAELARRRAVLP------QHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 528 GRCNFKADML---DRKVSLLSGGEK 549
+ D+ R LSGGE+
Sbjct: 116 AAALAQVDLAHLAGRDYPQLSGGEQ 140
|
Length = 258 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.9 bits (174), Expect = 3e-13
Identities = 60/205 (29%), Positives = 95/205 (46%), Gaps = 50/205 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ NI KS+ VL D++ ++ G+ V L+G +G+GKTT LRIIAG E SG++
Sbjct: 3 IEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFH 62
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ A+ + K+ F+ Q + + TV + AF + L R ++
Sbjct: 63 GTDVSRLHAR-DRKVGFVFQHYALFRHMTVFDNI--AFGLTV-----LPRRERP------ 108
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL--MPELGFTADDGDRLVASFSSGWQM 266
N + AKV++L M +L A DR A S G +
Sbjct: 109 ----------------------NAAAIKAKVTQLLEMVQLAHLA---DRYPAQLSGGQKQ 143
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R++L + L +P +LLLDEP LD
Sbjct: 144 RVALARALAVEPQILLLDEPFGALD 168
|
Length = 353 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 4e-13
Identities = 26/67 (38%), Positives = 42/67 (62%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ IKNL + D+ + +L++E+GE IIGP+G GKSTLL+ + GLE+P G +
Sbjct: 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 483 LGEHNVL 489
+ +V
Sbjct: 61 VDGEDVG 67
|
Length = 240 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-13
Identities = 45/202 (22%), Positives = 81/202 (40%), Gaps = 37/202 (18%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+ ++ G + +++ + GE + + G NG+GKTT LRI+AG P +G
Sbjct: 4 DELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-------- 55
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
V ++ + + + G + K S ++++ +
Sbjct: 56 ----------RVLLNGGPLDFQRDSIARGLLYLGHAPGI-KTTLSVLENLRFWHADHSDE 104
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ + A+ V L+ GF DR VA S+G Q R++L ++LL L
Sbjct: 105 QVEEALAR-VGLN-------------GF----EDRPVAQLSAGQQRRVALARLLLSGRPL 146
Query: 281 LLLDEPTNHLDLDTIEWLEGYL 302
+LDEPT LD + +
Sbjct: 147 WILDEPTTALDKAGVARFAEAM 168
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 5e-13
Identities = 35/135 (25%), Positives = 58/135 (42%), Gaps = 32/135 (23%)
Query: 423 SVVTIKNLEFGYEDRLLFNRA---------NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
++ +KNL+ + F + + +I+ GE ++G +GCGKSTL +LI+GL
Sbjct: 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGL 62
Query: 474 EKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK 533
E+P GE+ FE L ++ R + + LL +
Sbjct: 63 EEPTSGEI----------LFEGKDITKLSKEE-------------RRERVLELLEKVGLP 99
Query: 534 ADMLDRKVSLLSGGE 548
+ L R LSGG+
Sbjct: 100 EEFLYRYPHELSGGQ 114
|
Length = 268 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.3 bits (168), Expect = 6e-13
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Query: 426 TIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL GY + + L +L +ERGE A++G NG GK+TLLK IMGL +PR G ++
Sbjct: 5 EVENLSAGYGKIQALRG-VSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFD 63
Query: 485 EHNV 488
++
Sbjct: 64 GEDI 67
|
Length = 237 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 67.2 bits (165), Expect = 7e-13
Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L + + NLTI++GE A++GPNG GKSTL K IMG K GE+L
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILF 61
Query: 484 GEHNVL 489
++
Sbjct: 62 KGEDIT 67
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 8e-13
Identities = 56/231 (24%), Positives = 111/231 (48%), Gaps = 37/231 (16%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL +V+ +++GE VGL+G +G GK+T R++ G E+P G V +F Q+
Sbjct: 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV---------SFRGQD- 74
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ + R++ AF+ ++++ V + SAV+ + +++ E
Sbjct: 75 ---LYQLDRKQ-RRAFRRDVQL------VFQDSPSAVNPRMTVRQIIGE--------PLR 116
Query: 231 NLDTLD-----AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDE 285
+L +LD A++++L+ +G ++D D+L S G R+++ + L P L++LDE
Sbjct: 117 HLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDE 176
Query: 286 PTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
++LD+ +E L + I+HD + C ++ + G
Sbjct: 177 AVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKG 227
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (174), Expect = 8e-13
Identities = 54/227 (23%), Positives = 96/227 (42%), Gaps = 53/227 (23%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+ +++K + L+ E+ +GE +G+VG NG GKTT +++AG +PD G V
Sbjct: 341 VEYPDLTKKLGDFS-LEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV--- 396
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+KI++ Q + TV E+ L + L S+ +++ L
Sbjct: 397 DPELKISYKPQYIKPDYDGTV-EDL-------------LRSITDDLGSSYYKSEIIKPL- 441
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
L+ +L+ D+ V S G R+++ L +D
Sbjct: 442 -------------QLE-------RLL----------DKNVKDLSGGELQRVAIAACLSRD 471
Query: 278 PDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLD 320
DL LLDEP+ HLD L + + +++ +++ HD +D
Sbjct: 472 ADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMID 518
|
Length = 590 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 70.4 bits (173), Expect = 1e-12
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 37/166 (22%)
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316
V + S G + R+ L ++ L+ +LL+LDEPTN LD++T+E LE L ++++SHDR
Sbjct: 438 VKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDR 497
Query: 317 AFLDQLCTK--IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWE-------------- 360
F+D T+ I E + R Y G Y ++A ++ + A +
Sbjct: 498 QFVDNTVTECWIFEGNGKIGR-YVGGYHDARQQQAQYLALKQPAVKKKEEAAAPKAETVK 556
Query: 361 --------KQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEE 398
K QRE+EQ L+ L E ++E LQ +
Sbjct: 557 RSSKKLSYKLQRELEQLPQLLEDL------------EAEIEALQAQ 590
|
Length = 635 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 67.1 bits (165), Expect = 1e-12
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 16/140 (11%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I+NL + + + +L + +GE ++G NG GK+T LK++ G +P G
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAY 60
Query: 483 LGEHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAA------EDWRIDDIKGLLGR 529
+ +++ Q+ Q +AL + TV E + A + ++++ LL
Sbjct: 61 INGYSIRTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRV 120
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+++ LSGG K
Sbjct: 121 LGLTDKA-NKRARTLSGGMK 139
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 1e-12
Identities = 43/141 (30%), Positives = 69/141 (48%), Gaps = 19/141 (13%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE- 485
+KN+ + D+++ + NLTIE+G+ AIIG +G GKSTLL +I LEK G+V L
Sbjct: 1 LKNISKKFGDKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 486 -----HNVLPNYFEQN------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLG 528
++ + F + Q AL ++TV E + + ++ K L
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKEALE 120
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+ L +K+ LSGGE+
Sbjct: 121 KVGLNLK-LKQKIYELSGGEQ 140
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 1e-12
Identities = 61/199 (30%), Positives = 93/199 (46%), Gaps = 42/199 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V L+NI+K + TV+ ++ +K+G V L+G +G GKTT LR++AG E+P G +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI--- 63
Query: 158 KSNMKIAFLSQEFEVSMS----RTVREEFMS-AFKEEMEIAGKLERVQKALESAVDDMDL 212
F+ E +V+ R + F S A M + E V L+ +
Sbjct: 64 -------FIDGE-DVTHRSIQQRDICMVFQSYALFPHMSLG---ENVGYGLK-------M 105
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+G +E QR +A+ L L GF DR V S G Q R++L +
Sbjct: 106 LGVPKEE--RKQRVKEALELVDLA----------GF----EDRYVDQISGGQQQRVALAR 149
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+ P +LL DEP ++LD
Sbjct: 150 ALILKPKVLLFDEPLSNLD 168
|
Length = 351 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 28/67 (41%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-----PRGGEV 481
+++L Y D+ +L I +GE TA+IGP+GCGKSTLL+L+ L P GEV
Sbjct: 3 LRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEV 62
Query: 482 LLGEHNV 488
LL ++
Sbjct: 63 LLDGKDI 69
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-12
Identities = 37/112 (33%), Positives = 56/112 (50%), Gaps = 21/112 (18%)
Query: 385 ASSAEKKLERL----QEEEQIEKPFQRKQM--KIRFPERGRSGRSVVTIKNLEFGY--ED 436
A +A + L+ L E + + R ++ +I F +N+ F Y ++
Sbjct: 431 AKTALQSLDELMQLPVERPEGTRFLHRPRLQGEIEF-------------RNVSFAYPGQE 477
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ +LTI GEK AIIG G GKSTLLKL++GL +P G VLL ++
Sbjct: 478 TPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDI 529
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-12
Identities = 41/141 (29%), Positives = 65/141 (46%), Gaps = 19/141 (13%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +N+ Y ++ + NLTIE GE +IGP+G GK+T LK+I L +P GE+L+
Sbjct: 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILID 61
Query: 485 EHNV--LPNYFEQN------QAEALDLDKTVLETVA---------EAAEDWRIDDIKGLL 527
++ L + Q L TV E +A + R D++ L+
Sbjct: 62 GEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLV 121
Query: 528 GRCNFKADMLDRKVSLLSGGE 548
G ++ DR LSGG+
Sbjct: 122 GLD--PSEYADRYPHELSGGQ 140
|
Length = 309 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 2e-12
Identities = 50/211 (23%), Positives = 89/211 (42%), Gaps = 50/211 (23%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV----- 154
+ I K++ GV L D++++ + G+ L+G NGAGK+T L+I++G +PD+G++
Sbjct: 7 FDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQ 66
Query: 155 ------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
A +A + QE + TV E
Sbjct: 67 EMRFASTTAALAAGVAIIYQELHLVPEMTVAENLY------------------------- 101
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMR 267
+G+L + ++ R+ L+ + + + LG D D + S G QM
Sbjct: 102 ----LGQLPHKGGIVNRR-------LLNYEAREQLEHLGVDIDP-DTPLKYLSIGQRQM- 148
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298
+ + K L ++ ++ DEPT+ L IE L
Sbjct: 149 VEIAKALARNARVIAFDEPTSSLSAREIEQL 179
|
Length = 501 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 2e-12
Identities = 57/218 (26%), Positives = 95/218 (43%), Gaps = 21/218 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+SKSY G +DV++++ GE +G+VG +G+GK+T L +AG+ PD G +
Sbjct: 8 GLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSG 67
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
L Q E R +R E+ F + G RV M + R
Sbjct: 68 AELELYQLSEAERRRLMRTEW--GFVHQNPRDGLRMRVSAGANIGERLMAIGAR------ 119
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
+ + A + E+ D L +FS G Q R+ + + L+ P L+
Sbjct: 120 ---------HYGNIRATAQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLV 170
Query: 282 LLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+DEPT LD+ ++ L G + + ++I++HD
Sbjct: 171 FMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHD 208
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 2e-12
Identities = 42/143 (29%), Positives = 65/143 (45%), Gaps = 27/143 (18%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + ++ F Y + R +LT+ GE AI+GP+G GKSTLL LI G E P GE+L+
Sbjct: 2 LALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 485 --EHNVLPNY-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGL 526
+H P F++N L TV + + A + +++
Sbjct: 60 GVDHTASPPAERPVSMLFQENN---LFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ 116
Query: 527 LGRCNFKADMLDRKVSLLSGGEK 549
+G A L R LSGG++
Sbjct: 117 VGL----AGFLKRLPGELSGGQR 135
|
Length = 231 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 3e-12
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ IKNL + D + +LT+++GE IIGP+G GKSTLL+ I LE+P G +++
Sbjct: 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIID 60
Query: 485 EHNV 488
+
Sbjct: 61 GLKL 64
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (163), Expect = 3e-12
Identities = 28/61 (45%), Positives = 39/61 (63%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL GY + + N +L++ G+ TA+IGPNGCGKSTLLK L P+ G V LG
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 485 E 485
+
Sbjct: 63 D 63
|
Length = 255 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 30/88 (34%), Positives = 48/88 (54%), Gaps = 5/88 (5%)
Query: 412 IRFPERG--RSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLL 467
+ FP + + +T+ N+ F Y D+ + +L I+ GEK A++G GCGKSTLL
Sbjct: 324 VTFPTTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLL 383
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495
+L+ P+ GE+LL + +Y E
Sbjct: 384 QLLTRAWDPQQGEILLNGQP-IADYSEA 410
|
Length = 574 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 3e-12
Identities = 60/244 (24%), Positives = 116/244 (47%), Gaps = 35/244 (14%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P +G++
Sbjct: 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR----- 64
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLL 217
++ E E+ + R + A K +L+R++ L +L M L
Sbjct: 65 -----VNGE-EIRLKRDKDGQLKPADKR------QLQRLRTRLGMVFQHFNLWSHMTVLE 112
Query: 218 DEFD-----LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ + L KA+A+ + K + ++G A+ D A S G Q R+++ +
Sbjct: 113 NVIEAPVHVLGVSKAEAI------ERAEKYLAKVGI-AEKADAYPAHLSGGQQQRVAIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L +P+++L DEPT+ LD + + E L+ L ++ MV+++H+ F + + ++
Sbjct: 166 ALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFL 225
Query: 330 EMGV 333
G
Sbjct: 226 HQGK 229
|
Length = 256 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-12
Identities = 48/212 (22%), Positives = 76/212 (35%), Gaps = 61/212 (28%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+++ G + +++ + GE + L G NG+GKTT LR+IAG P +G + +
Sbjct: 6 EDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGD 65
Query: 161 MKIAFLSQEFEVS--------MSR--TVRE--EFMSAFKEEMEIAGKLERVQKALESAVD 208
E M TV E EF +AF G+ + ALE
Sbjct: 66 ---IDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFL-----GGEELDIAAALE---- 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
AV L L S+G + R+
Sbjct: 114 --------------------AVGLAPL-----------------AHLPFGYLSAGQKRRV 136
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
+L ++L+ + + +LDEPT LD +
Sbjct: 137 ALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 3e-12
Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 11/95 (11%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFE 494
R+LF+ + T+ GE + GPNG GK+TLL+LI GL P G + L ++ P+ E
Sbjct: 14 GRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAE 73
Query: 495 QNQ----AEALDLDKTVLETVAEAAEDWRIDDIKG 525
A+ K L TVAE E W G
Sbjct: 74 ACHYLGHRNAM---KPAL-TVAENLEFWA--AFLG 102
|
Length = 207 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 51/213 (23%), Positives = 85/213 (39%), Gaps = 58/213 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN+S S G +L V+ +++ GE + ++G NGAGK+T L+ ++G+ PDSG V
Sbjct: 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLN 61
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES- 205
+ + + A L Q ++ TV+E ++ R+
Sbjct: 62 GVPLNSWPPEELARHR-AVLPQNSSLAFPFTVQEVV------------QMGRIPHRSGRE 108
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+D + + L DL G R + S G Q
Sbjct: 109 PEEDERIAAQALAATDL-----------------------SGLAG----RDYRTLSGGEQ 141
Query: 266 MRMSLGKILLQ------DPDLLLLDEPTNHLDL 292
R+ L ++L Q L LDEPT+ LD+
Sbjct: 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDI 174
|
Length = 259 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 25/71 (35%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 419 RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++++NL F Y D + + NLTI+ G+ TA++G +G GKSTLL L++G P
Sbjct: 315 NEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPT 374
Query: 478 GGEVLLGEHNV 488
GE+ + ++
Sbjct: 375 QGEIRVNGIDL 385
|
Length = 559 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 4e-12
Identities = 43/161 (26%), Positives = 68/161 (42%), Gaps = 22/161 (13%)
Query: 410 MKIRFP-ERGRSGRSVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
++ FP E+ + + ++N+ F Y NLT+ +GEK AI+G +G GKSTL
Sbjct: 321 PEVTFPDEQTATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTL 380
Query: 467 LKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--------LDKTVLETVAEAAED- 517
L+L+ G P+ G + L + + EQ E + T+ + + A D
Sbjct: 381 LQLLAGAWDPQQGSITLNGVEI-ASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDA 439
Query: 518 -----WRIDDIKGLLGRCNFKADMLDRKVSL----LSGGEK 549
W GL D L+ + LSGGE+
Sbjct: 440 SDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480
|
Length = 573 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-12
Identities = 48/214 (22%), Positives = 77/214 (35%), Gaps = 56/214 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ EN+S T+ D+++ + GE + + G NGAGKTT LRI+AG PD+G V
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 158 KSNMK---------IAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESA 206
++ + +L + + T E F F + A
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGN--------AATIWEA 114
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+ + L G D V S+G Q
Sbjct: 115 LAQVGLAGLE-------------------------------------DLPVGQLSAGQQR 137
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300
R++L ++ L L +LDEP LD + + L
Sbjct: 138 RVALARLWLSPAPLWILDEPFTALDKEGVALLTA 171
|
Length = 209 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 66.7 bits (163), Expect = 4e-12
Identities = 55/194 (28%), Positives = 90/194 (46%), Gaps = 31/194 (15%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++ +++K Y L +V++E +KG VG +G NGAGK+T ++II G PDSG+V
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQV- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
L EV + E + +M V++ L+ + G+LL
Sbjct: 62 ---CGEDVLQNPKEVQRNIGYLPEHNPLY-LDM-------YVREYLQFIAGIYGMKGQLL 110
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR + + L L + K + +L S G++ R+ L + L+ D
Sbjct: 111 K-----QRVEEMIELVGLRPEQHKKIGQL--------------SKGYRQRVGLAQALIHD 151
Query: 278 PDLLLLDEPTNHLD 291
P +L+LDEPT LD
Sbjct: 152 PKVLILDEPTTGLD 165
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 5e-12
Identities = 60/220 (27%), Positives = 99/220 (45%), Gaps = 49/220 (22%)
Query: 87 SNTGASSISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
+ + A++ + L N+S +Y VLK ++ ++K GEKV L+G G GK+T L+++
Sbjct: 328 TTSTAAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLT 387
Query: 145 GQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
+P G ++ + I+ +SQ + S T+R+
Sbjct: 388 RAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDN------------- 433
Query: 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
+ A +A D+ L+ ++LQ+ V L+ L L LG +G
Sbjct: 434 ----LLLAAPNASDE-----ALI---EVLQQ----VGLEKLLEDDKGLNAWLG----EGG 473
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
R + S G Q R+ + + LL D LLLLDEPT LD +T
Sbjct: 474 RQL---SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAET 510
|
Length = 574 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 5e-12
Identities = 42/139 (30%), Positives = 62/139 (44%), Gaps = 19/139 (13%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+K + + D + N +L++ GE AI GP+GCGKSTLLK++ L P G +L
Sbjct: 5 ELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEG 64
Query: 486 HNVL---PNYFEQNQAEALDLDKTVLETVAEAAED-----WRI-------DDIKGLLGRC 530
+V P + Q + +TV ED W+I LL R
Sbjct: 65 EDVSTLKPEAYRQQVSYCAQTPALFGDTV----EDNLIFPWQIRNRRPDRAAALDLLARF 120
Query: 531 NFKADMLDRKVSLLSGGEK 549
+L + ++ LSGGEK
Sbjct: 121 ALPDSILTKNITELSGGEK 139
|
Length = 223 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 6e-12
Identities = 56/230 (24%), Positives = 107/230 (46%), Gaps = 49/230 (21%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ EN+S SY VLKD+++ ++ GEKV +VG +G+GK+T ++++ +P SG +
Sbjct: 329 IEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388
Query: 155 -IKAKSNM-------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ +I +SQ+ + S T+RE
Sbjct: 389 DGIDIRDISLDSLRKRIGIVSQDPLL-FSGTIRENI------------------------ 423
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+GR + ++ + N ++ L G+ G+R V + S G +
Sbjct: 424 -----ALGRPDATDEEIEEALKLANAHEF---IANL--PDGYDTIVGERGV-NLSGGQRQ 472
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314
R+++ + LL++P +L+LDE T+ LD +T ++ L K + +II+H
Sbjct: 473 RLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAH 522
|
Length = 567 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 6e-12
Identities = 66/219 (30%), Positives = 86/219 (39%), Gaps = 46/219 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-----KSNMKIAFLSQ--EFE 171
KGE +GL+G NGAGKTT LR I G P G V A K I ++ Q EF
Sbjct: 2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFA 61
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+V MS + G L R A +AV D L+R V
Sbjct: 62 WDFPISVAHTVMSGRTGHI---GWLRRPCVADFAAVRDA------------LRR----VG 102
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
L L DR V S G + R+ + + L P +LLLDEP LD
Sbjct: 103 LTEL-----------------ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLD 145
Query: 292 LDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
+ T E L L +++ +HD A C ++V
Sbjct: 146 MPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVV 184
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 63.4 bits (155), Expect = 7e-12
Identities = 25/75 (33%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVII 312
V S G + R++L + LL +PDLLLLDEPT+ LD + E L L ++ ++I+
Sbjct: 77 YVPQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIV 136
Query: 313 SHDRAFLDQLCTKIV 327
+HD + +++
Sbjct: 137 THDPELAELAADRVI 151
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 43/129 (33%), Positives = 59/129 (45%), Gaps = 30/129 (23%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPN----YFEQN- 496
+ I +GE + GP+G GKSTLLKLI G E+P G++L+ H++ L + +
Sbjct: 22 SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81
Query: 497 ----QAEALDLDKTVLETVAEAAE-------DWRID-----DIKGLLGRCNFKADMLDRK 540
Q L D+TV E VA + R D+ GL KA L
Sbjct: 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKH----KARALP-- 135
Query: 541 VSLLSGGEK 549
S LSGGE+
Sbjct: 136 -SQLSGGEQ 143
|
Length = 223 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 66.9 bits (164), Expect = 7e-12
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 88 NTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
N SS+S V+L ISKS+ G V+ ++ + GE + L+G +G GKTT LR+IAG E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 148 EPDSGNVI 155
PDSG ++
Sbjct: 65 TPDSGRIM 72
|
Length = 375 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 64.8 bits (159), Expect = 7e-12
Identities = 53/217 (24%), Positives = 95/217 (43%), Gaps = 65/217 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDS 151
++ +N+S Y+ VLK++++ +K GEKVG+VG G+GK++ R++ E S
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLV----ELSS 58
Query: 152 GNVI------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLE 197
G+++ +S +I+ + Q+ V S T+R + F E + E+ LE
Sbjct: 59 GSILIDGVDISKIGLHDLRS--RISIIPQD-PVLFSGTIRSN-LDPFGEYSDEELWQALE 114
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
RV L+ V+ + LD V + G+
Sbjct: 115 RVG--LKEFVESL---------------------PGGLDTVV----------EEGGE--- 138
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + + L + LL+ +L+LDE T +D +T
Sbjct: 139 -NLSVGQRQLLCLARALLRKSKILVLDEATASVDPET 174
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 9e-12
Identities = 60/244 (24%), Positives = 105/244 (43%), Gaps = 37/244 (15%)
Query: 98 VKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD 150
+++E++SK++ + VLK+V+ V GE V L G +GAGK+T L+ + PD
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 151 SGNVIKAKSNMKIAFLSQ--EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
SG I + L+Q EV R ++S F + RV ALE +
Sbjct: 62 SGR-ILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLR------VIPRVS-ALEVVAE 113
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ G + R + + + ++ L P A+FS G Q R+
Sbjct: 114 PLLERGVPREA--ARARARELLARLNIPERLWHLPP-------------ATFSGGEQQRV 158
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324
++ + + D +LLLDEPT LD +E + + ++ I HD + +
Sbjct: 159 NIARGFIADYPILLLDEPTASLDAANRQVVVELIAE-AKARGAALIGIFHDEEVRELVAD 217
Query: 325 KIVE 328
++++
Sbjct: 218 RVMD 221
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-11
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 3/71 (4%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDR 316
S G + R++L + LL DP+LL+LDEPT+ LD ++ L K+ +++ SH
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 317 AFLDQLCTKIV 327
++LC ++
Sbjct: 156 EEAERLCDRVA 166
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 1e-11
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEA 500
+ +L++ RGE A++G NG GKSTL+K++ GL KP GE+L+ V + +A
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFA----SPRDA 72
Query: 501 LDL 503
Sbjct: 73 RRA 75
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 54/230 (23%), Positives = 92/230 (40%), Gaps = 67/230 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
+++++ S G +LK V +KKGE L+G NG+GK+T + I G E G
Sbjct: 2 EIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG---- 57
Query: 157 AKSNMKIAFLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+I F ++ ++ R AF+ EI G V + D + R
Sbjct: 58 -----EILFKGEDITDLPPEERARLGIFLAFQYPPEIPG------------VKNADFL-R 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
++E FS G + R + ++LL
Sbjct: 100 YVNE---------------------------------------GFSGGEKKRNEILQLLL 120
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQL 322
+PDL +LDEP + LD+D + + L ++ ++II+H + LD +
Sbjct: 121 LEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYI 170
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 65/245 (26%), Positives = 103/245 (42%), Gaps = 68/245 (27%)
Query: 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++ G E I K + DV+ +V++GE ++G++G+GK+T LR I EP SG
Sbjct: 21 LAKGKSKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK 80
Query: 154 VI---KAKSNM-----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLE 197
V+ + + M KI+ + Q F + RTV E AF +E+ G + E
Sbjct: 81 VLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVLEN--VAFG--LEVQGVPRAE 136
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
R ++A E+ ++L+G L +
Sbjct: 137 REERAAEA----LELVG-------------------------------LE---GWEHKYP 158
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMV 310
S G Q R+ L + L DPD+LL+DE + LD D + L+ L K +V
Sbjct: 159 DELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKT---IV 215
Query: 311 IISHD 315
I+HD
Sbjct: 216 FITHD 220
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 13/105 (12%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
S ++V ++ + F +R +F+ +LT+ RG+ TAI+GP+G GK+TLL+LI G P G
Sbjct: 3 SVANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG 62
Query: 480 EVLLGEHNVLPNYFEQN------------QAEALDLDKTVLETVA 512
E+L N+ P Q+ AL D V + VA
Sbjct: 63 EILFDGENI-PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVA 106
|
Length = 269 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
N +L + GE +IGPNG GK+TL LI G KP G V+ ++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68
|
Length = 250 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 63.7 bits (156), Expect = 2e-11
Identities = 43/135 (31%), Positives = 62/135 (45%), Gaps = 30/135 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489
N +L ++ GE IIGPNG GK+T++ +I G +P G VL G ++
Sbjct: 19 NDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAG 78
Query: 490 -------PNYFE-----QNQAEALDLDKTVLETVAE---AAEDWRIDDIKGLLGRCNFKA 534
P FE +N AL DK+V ++ A E RI+++ +G A
Sbjct: 79 IGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGL----A 134
Query: 535 DMLDRKVSLLSGGEK 549
D DR LLS G+K
Sbjct: 135 DEADRLAGLLSHGQK 149
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 47/148 (31%), Positives = 57/148 (38%), Gaps = 39/148 (26%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN- 487
NL + R L + +L + GE AI+GPNG GKSTLLK + G P GEV L
Sbjct: 6 NLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPL 65
Query: 488 -------------VLPNYFEQNQAEALDLDKTVLETV----------AEAAEDWRIDDIK 524
VLP Q +L TV E V E ED RI
Sbjct: 66 NSWPPEELARHRAVLP------QNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAA-- 117
Query: 525 GLLGRCNFKADML---DRKVSLLSGGEK 549
+ D+ R LSGGE+
Sbjct: 118 ----QALAATDLSGLAGRDYRTLSGGEQ 141
|
Length = 259 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 41/147 (27%), Positives = 59/147 (40%), Gaps = 35/147 (23%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ +NL +R LF+ + T+ GE I GPNG GK+TLL+++ GL +P GEV
Sbjct: 3 LEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQ 62
Query: 484 GEH-NVLPNYFEQN-----QAEALDLDKTVLE---------------TVAEAAEDWRIDD 522
GE + + Q + + T LE T+ EA
Sbjct: 63 GEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQV---- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
GL G D V LS G++
Sbjct: 119 --GLAGL-------EDLPVGQLSAGQQ 136
|
Length = 209 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 2e-11
Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 17/106 (16%)
Query: 387 SAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY-EDRLLFNR 442
+AE+ E L EE ++ P + I F +N+ F Y + +
Sbjct: 301 AAERLFELLDEEPEVEDPPDPLKDTIGSIEF-------------ENVSFSYPGKKPVLKD 347
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ +IE GEK AI+GP+G GKSTL+KL++ L P GE+L+ ++
Sbjct: 348 ISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393
|
Length = 567 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 2e-11
Identities = 52/232 (22%), Positives = 111/232 (47%), Gaps = 51/232 (21%)
Query: 98 VKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VK +N++ +Y VL+DV++ + GE LVG +G+GK+T + ++ +P G V
Sbjct: 12 VKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQV 71
Query: 155 I---KAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ K S + K++ + QE V +R++++ IA L+
Sbjct: 72 LLDGKPISQYEHKYLHSKVSLVGQE-PVLFARSLQD----------NIAYGLQSC----- 115
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
F+ ++ AQ + + +S+L G+ + G++ + S G
Sbjct: 116 --------------SFECVKEAAQKAHAHSF---ISEL--ASGYDTEVGEK-GSQLSGGQ 155
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG--YLGKQDVPMVIISH 314
+ R+++ + L+++P +L+LDE T+ LD ++ + ++ Y + +++I+H
Sbjct: 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAH 207
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 50/201 (24%), Positives = 75/201 (37%), Gaps = 39/201 (19%)
Query: 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++ +S Y L DV++ V+ G V L+G NGAGK+T ++ G +
Sbjct: 1 ALEVAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI-- 58
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL--MG 214
+A + R R L R+ + D+DL
Sbjct: 59 -----SVA------GHDLRRAPRA--------------ALARLGVVFQQPTLDLDLSVRQ 93
Query: 215 RLLDEFDL--LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
L L L R + L A+ LG D+ V + G + R+ + +
Sbjct: 94 NLRYHAALHGLSRAEARARIAELLAR-------LGLAERADDK-VRELNGGHRRRVEIAR 145
Query: 273 ILLQDPDLLLLDEPTNHLDLD 293
LL P LLLLDEPT LD
Sbjct: 146 ALLHRPALLLLDEPTVGLDPA 166
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 62/249 (24%), Positives = 109/249 (43%), Gaps = 65/249 (26%)
Query: 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + K + L +V+ V G+ G++G +GAGK+T +R + E P SG+
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 154 VI---------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198
VI KA+ + + F Q F + SRTV +A LE
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIF--QHFNLLSSRTVFG----------NVALPLE- 108
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
L + D + KV++L+ +G D D +
Sbjct: 109 ------------------------LDNTPK----DEIKRKVTELLALVGLG-DKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD T +E L+ + + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITH 199
Query: 315 DRAFLDQLC 323
+ + ++C
Sbjct: 200 EMDVVKRIC 208
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.0 bits (161), Expect = 2e-11
Identities = 37/101 (36%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNR 442
A A K+ +L+ F R Q FP+ + ++N+ F Y+D
Sbjct: 291 TAQVAFNKIAKLELAPYKAD-FPRPQ---AFPDW-----KTLELRNVRFAYQDNAFHVGP 341
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL
Sbjct: 342 INLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
|
Length = 546 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 3e-11
Identities = 23/77 (29%), Positives = 40/77 (51%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +L Y + + + +L +++GE +GPNG GK+T +K+I+GL KP GE+
Sbjct: 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFD 60
Query: 485 EHNVLPNYFEQNQAEAL 501
+ N + AL
Sbjct: 61 GKSYQKNIEALRRIGAL 77
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 3e-11
Identities = 51/181 (28%), Positives = 72/181 (39%), Gaps = 30/181 (16%)
Query: 392 LERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTI--KNLEFGYED-RLLFNRANLTIE 448
ER+ E P P G G T+ ++L GY + + +L +
Sbjct: 304 AERIVEVLDAAGPVAEGS----APAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLP 359
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL----------GEHNVLPNYFEQNQA 498
GE+ AI+GP+G GKSTLL + GL P GEV L E + Q+
Sbjct: 360 PGERVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQD-- 417
Query: 499 EALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF------KADMLDRKV----SLLSGGE 548
A D TV E + A D +++ L R D LD + + LSGGE
Sbjct: 418 -AHLFDTTVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGE 476
Query: 549 K 549
+
Sbjct: 477 R 477
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 3e-11
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 39/160 (24%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
++ S +V ++ + ++ + + + +LTI GE ++GP+GCGK+T+L+LI G E
Sbjct: 5 NKQPSSLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFE 64
Query: 475 KPRGGEVLL-GE------------HNVLPNY--------FEQNQAEALDLDKT----VLE 509
P G ++L G+ + V +Y FE N A L + KT +
Sbjct: 65 TPDSGRIMLDGQDITHVPAENRHVNTVFQSYALFPHMTVFE-NVAFGLRMQKTPAAEITP 123
Query: 510 TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
V EA +++ + RK LSGG++
Sbjct: 124 RVMEALRMVQLE-------------EFAQRKPHQLSGGQQ 150
|
Length = 375 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 3e-11
Identities = 47/204 (23%), Positives = 79/204 (38%), Gaps = 61/204 (29%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI--- 155
++ N++ Y +L+ V+ EV KGE ++G NG GKTT L+ + G SG++
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 156 ----KAKSNMK----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + + IA++ Q E+ TV E ++ +
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLA-----------ALPRRSRKI 110
Query: 208 DDMDLMGRLLDEF----DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
D + + F ++L R+ GD S G
Sbjct: 111 PD-----EIYELFPVLKEMLGRRG-------------------------GD-----LSGG 135
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++++ + L+ P LLLLDEPT
Sbjct: 136 QQQQLAIARALVTRPKLLLLDEPT 159
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 3e-11
Identities = 47/213 (22%), Positives = 94/213 (44%), Gaps = 52/213 (24%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
E+ GE +G++G NG GKTT ++++AG +PD G+ K + K ++S +++ TV
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISPDYDG----TV 418
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
+ SA + A S+ +++ L NL+
Sbjct: 419 EDLLRSAIRS-------------AFGSSYFKTEIVKPL--------------NLE----- 446
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD----T 294
L+ +R V S G R+++ L ++ DL LLDEP+ +LD++
Sbjct: 447 --DLL----------ERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIV 494
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
+ + ++ + +++ HD +D + +++
Sbjct: 495 AKVIRRFIENNEKTALVVDHDIYMIDYVSDRLI 527
|
Length = 591 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 56/239 (23%), Positives = 101/239 (42%), Gaps = 54/239 (22%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+K EN+ K Y+ VLK V+ + KGE V +VG +G+GK+T L ++ G + P SG
Sbjct: 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGE 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESA 206
V+ F Q +S R + F+ F + LE V
Sbjct: 62 VL---------FNGQSLS-KLSSNERAKLRNKKLGFIYQFHHLLPDFTALENV------- 104
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDT---LDAKVSKLMPELGFTADDGDRLVASFSSG 263
M L+ + + + K +A + L+ +++ EL S G
Sbjct: 105 -----AMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSEL--------------SGG 145
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318
+ R+++ + L+ P L+L DEPT +LD + + + + + + ++++HD
Sbjct: 146 ERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLEL 204
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 3e-11
Identities = 61/220 (27%), Positives = 94/220 (42%), Gaps = 48/220 (21%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
E K N + SS + + N+ G VLK++ +++KGE + + G G+GK
Sbjct: 21 LEKAKQENN--DRKHSSDDNNLFFSNLC--LVGAPVLKNINLKIEKGEMLAITGSTGSGK 76
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
T+ L +I G+ EP G K K + +I+F SQ F M T++E
Sbjct: 77 TSLLMLILGELEPSEG---KIKHSGRISFSSQ-FSWIMPGTIKENI-------------- 118
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT--ADDGD 254
+ G DE+ R V L+ ++K PE T + G
Sbjct: 119 ---------------IFGVSYDEY----RYKSVVKACQLEEDITKF-PEKDNTVLGEGGI 158
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G + R+SL + + +D DL LLD P +LD+ T
Sbjct: 159 TL----SGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 194
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 3e-11
Identities = 29/99 (29%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 389 EKKLERLQE--EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLFNRAN 444
E L RL + ++ + ++ E V ++N+ FGY + L +
Sbjct: 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFS 499
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
LT++ G++ A++G +G GKST+ KL+ GL +P GE+L
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILF 538
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 5e-11
Identities = 21/71 (29%), Positives = 32/71 (45%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ G S + I + + + + RGE+ +IG NG GKSTLL+L+
Sbjct: 9 SYPTYKGGSSSLKKLGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLL 68
Query: 471 MGLEKPRGGEV 481
G+ P G V
Sbjct: 69 AGIYPPDSGTV 79
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 5e-11
Identities = 24/64 (37%), Positives = 40/64 (62%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + D + + +L I GE A++GP+G GK+TLL+LI GLE+P G +L G
Sbjct: 3 IEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFG 62
Query: 485 EHNV 488
+
Sbjct: 63 GEDA 66
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 5e-11
Identities = 43/147 (29%), Positives = 61/147 (41%), Gaps = 26/147 (17%)
Query: 427 IKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVLL 483
IK+L E + + NLT++ GE AI+GPNG GKSTL IMG + GE+L
Sbjct: 6 IKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILF 65
Query: 484 GEHNVL---PNYFE----------QNQAE-----ALDLDKTVLETVAEAAEDWR--IDDI 523
++L P+ E Q E D + + A I ++
Sbjct: 66 DGEDILELSPD--ERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKEL 123
Query: 524 KGLLGRCNFKADMLDRKVSL-LSGGEK 549
K + L+R V+ SGGEK
Sbjct: 124 KEKAELLGLDEEFLERYVNEGFSGGEK 150
|
Length = 251 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 6e-11
Identities = 22/65 (33%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y E + + N +I+ GE AI+GP G GK+TL+ L+M P+ G++L+
Sbjct: 3 IEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILI 62
Query: 484 GEHNV 488
++
Sbjct: 63 DGIDI 67
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 6e-11
Identities = 36/173 (20%), Positives = 68/173 (39%), Gaps = 46/173 (26%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ + E +G++G NG GKTT ++++AG +PD G++ +++ Q + TV
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIE--IELDTVSYKPQYIKADYEGTV 78
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R+ S + ++ L +
Sbjct: 79 RDLLSS-------------ITKDFYTHPYFKTEIAKPL---------------------Q 104
Query: 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ +++ DR V S G R+++ L +D D+ LLDEP+ +LD
Sbjct: 105 IEQIL----------DREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLD 147
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 7e-11
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 44/218 (20%)
Query: 77 FENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGK 136
FE K +NK + G+ N S VLK+++++++KG+ + + G G+GK
Sbjct: 410 FEKIKQNNK--ARKQPNGDDGLFFSNFS--LYVTPVLKNISFKLEKGQLLAVAGSTGSGK 465
Query: 137 TTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196
++ L +I G+ EP G K K + +I+F Q M T+++
Sbjct: 466 SSLLMMIMGELEPSEG---KIKHSGRISFSPQ-TSWIMPGTIKDNI-------------- 507
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
+ G DE+ R + L+ ++ + +G
Sbjct: 508 ---------------IFGLSYDEY----RYTSVIKACQLEEDIALFPEKDKTVLGEGG-- 546
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G + R+SL + + +D DL LLD P HLD+ T
Sbjct: 547 -ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVT 583
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 9e-11
Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 24/140 (17%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++NL +++ L N +L +ERG+ I+GP G GKS LL+ I G KP G++LL
Sbjct: 3 VENLSKDWKEFKLKN-VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGK 61
Query: 487 NV--LP------NYFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGR 529
++ LP +Y QN AL TV + +A + + ++ +I +LG
Sbjct: 62 DITNLPPEKRDISYVPQNY--ALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLG- 118
Query: 530 CNFKADMLDRKVSLLSGGEK 549
+L+RK LSGGE+
Sbjct: 119 ---IDHLLNRKPETLSGGEQ 135
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 1e-10
Identities = 24/64 (37%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
++NL Y + + +L+I GE A+IGP+G GKSTLL+ + GL +P G VL+
Sbjct: 2 EVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLID 61
Query: 485 EHNV 488
++
Sbjct: 62 GTDI 65
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ + Y R + T+ GE+ A++GP+G GKSTLL L++G P G +
Sbjct: 320 PSLEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI 379
Query: 482 LLG 484
+
Sbjct: 380 AVN 382
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 30/142 (21%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+ L F Y R + + T+ G A++GPNG GKSTL L+ L + G++ + H
Sbjct: 4 VAGLSFRYGARRALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 487 NV----------LPNYFEQNQAEALDLDKTVLETV-----------AEAAEDWRIDDIKG 525
++ L F+Q LDLD +V + + AEA RI ++
Sbjct: 64 DLRRAPRAALARLGVVFQQP---TLDLDLSVRQNLRYHAALHGLSRAEARA--RIAELLA 118
Query: 526 LLGRCNFKADMLDRKVSLLSGG 547
LG A+ D KV L+GG
Sbjct: 119 RLGL----AERADDKVRELNGG 136
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.4 bits (149), Expect = 1e-10
Identities = 40/134 (29%), Positives = 59/134 (44%), Gaps = 25/134 (18%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PN 491
YE L +L + GE AI+GP+G GKSTLL LI G +P G + + + +
Sbjct: 8 YEYEHLPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAP 67
Query: 492 Y-------FEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKAD 535
Y F++N L TV + + A + ++ D +G AD
Sbjct: 68 YQRPVSMLFQENN---LFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVG----IAD 120
Query: 536 MLDRKVSLLSGGEK 549
LDR LSGG++
Sbjct: 121 YLDRLPEQLSGGQR 134
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 50/196 (25%)
Query: 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVI-------KA 157
K +L DV+ V+ G+ + ++G +G+GKTT L I+G+ E SG ++
Sbjct: 18 KYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPD 77
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ +A++ Q+ + TVRE + + + + R
Sbjct: 78 QFQKCVAYVRQDDILLPGLTVRETLTYTAILR-------------------------LPR 112
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ +R + D ++ G LV S G + R+S+ LL
Sbjct: 113 KSSDAIRKKRVEDVLLRDLALTRI-------------GGNLVKGISGGERRRVSIAVQLL 159
Query: 276 QDPDLLLLDEPTNHLD 291
DP +L+LDEPT+ LD
Sbjct: 160 WDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.6 bits (155), Expect = 1e-10
Identities = 36/109 (33%), Positives = 58/109 (53%), Gaps = 11/109 (10%)
Query: 384 RASSAEKKL-ERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLL 439
RA+ A ++L E LQ E I+ P K + + P RG + + + F Y D+
Sbjct: 303 RAAGAAERLIELLQAEPDIKAPAHPKTLPV--PLRGE-----IEFEQVNFAYPARPDQPA 355
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ NLT+ GE A++GP+G GKSTL +L++ P+ G +LL ++
Sbjct: 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDL 404
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 63/230 (27%), Positives = 94/230 (40%), Gaps = 65/230 (28%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L +SK Y TVL + + G+ V +VG +G GK+T LR++AG E P +G +
Sbjct: 15 LNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL----- 69
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM---GRL 216
+AG L A +D LM RL
Sbjct: 70 --------------------------------LAG-----TAPLAEAREDTRLMFQDARL 92
Query: 217 L------DEFDL-LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
L D L L+ + + L L A +G AD + A+ S G + R++
Sbjct: 93 LPWKKVIDNVGLGLKGQWRDAALQALAA--------VGL-ADRANEWPAALSGGQKQRVA 143
Query: 270 LGKILLQDPDLLLLDEPTNHLD-LDTIEW---LEGYLGKQDVPMVIISHD 315
L + L+ P LLLLDEP LD L IE +E + +++++HD
Sbjct: 144 LARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
|
Length = 257 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-10
Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 25/149 (16%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR--GGEVLL 483
IK+L ED+ + NLT+++GE AI+GPNG GKSTL K I G G +L
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 484 GEHNVLPNYFE-----------QNQAE-----ALDLDKTVLETVAEAAEDWRID------ 521
++L + Q E L+ ++ L A + +D
Sbjct: 62 KGQDLLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK 121
Query: 522 DIKGLLGRCNFKADMLDRKVSL-LSGGEK 549
+K L + L+R V+ SGGEK
Sbjct: 122 LLKAKLALLGMDEEFLNRSVNEGFSGGEK 150
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 2e-10
Identities = 27/72 (37%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+ E+ S + +K L G + + I +GE+ IIG NG GKSTLLKL
Sbjct: 15 IYHEKSYSLKK--RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKL 72
Query: 470 IMGLEKPRGGEV 481
I G+ KP G+V
Sbjct: 73 IAGIYKPTSGKV 84
|
Length = 249 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 44/136 (32%), Positives = 65/136 (47%), Gaps = 31/136 (22%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG---------EHNVL-- 489
N + +++ GE +IGPNG GK+TL+ +I G +P+ GEVL EH +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARA 81
Query: 490 --------PNYFE-----QNQAEALDLDKTVLETV---AEAAEDWRIDDIKGLLGRCNFK 533
P FE +N AL+ DK+V ++ A E RID++ +G
Sbjct: 82 GIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGL---- 137
Query: 534 ADMLDRKVSLLSGGEK 549
D DR +LLS G+K
Sbjct: 138 GDERDRLAALLSHGQK 153
|
Length = 249 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 2e-10
Identities = 27/61 (44%), Positives = 39/61 (63%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
VT++N+ Y D ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIG 63
Query: 485 E 485
E
Sbjct: 64 E 64
|
Length = 369 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 2e-10
Identities = 54/207 (26%), Positives = 85/207 (41%), Gaps = 50/207 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++ EN++ Y +L D++ + G+ L+G NG GK+T L+ A P SG V
Sbjct: 3 LRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLG 62
Query: 155 ---IKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
I S+ ++A L Q TVRE + A+ G+ +
Sbjct: 63 DKPISMLSSRQLARRLALLPQHHLTPEGITVRE--LVAY-------GRSPWL-------- 105
Query: 208 DDMDLMGRLLDEFD--LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L GRL E D + + + ++ L DR + S G +
Sbjct: 106 ---SLWGRLSAE-DNARVNQAMEQTRINHL-----------------ADRRLTDLSGGQR 144
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDL 292
R L +L QD ++LLDEPT +LD+
Sbjct: 145 QRAFLAMVLAQDTPVVLLDEPTTYLDI 171
|
Length = 255 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 2e-10
Identities = 58/232 (25%), Positives = 100/232 (43%), Gaps = 25/232 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++++ I K++ GV L + EV+ GE VGL G NGAGK+T ++I+ SG
Sbjct: 2 LEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKIL-------SGVYPHG 54
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+ +I + + S R + +E+ + +L + +++ L G +
Sbjct: 55 TWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLG--NEITLPGGRM 112
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
++ + +A+ L+ EL AD+ R V + G Q + + K L +
Sbjct: 113 A-YNAMYLRAK------------NLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQ 159
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKI 326
LL+LDEP++ L E L L V V ISH + +C I
Sbjct: 160 ARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTI 211
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 60/261 (22%), Positives = 101/261 (38%), Gaps = 72/261 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++L I+ Y L D+T + +GE + L+G +GAGK++ LR++ E P SG + A
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 158 KSNM---------KIAFLSQEFEVSM---------SRTVREEFMSAFKEEMEIAGKLERV 199
++ I L + V M TV++ + A + G +
Sbjct: 63 GNHFDFSKTPSDKAIRELRR--NVGMVFQQYNLWPHLTVQQNLIEA---PCRVLGLSK-- 115
Query: 200 QKALESAVDDMDLMGRL-LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL A L+ RL L + DR
Sbjct: 116 DQALARA---EKLLERLRLKPY--------------------------------ADRFPL 140
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVI 311
S G Q R+++ + L+ +P +LL DEPT LD + I L + VI
Sbjct: 141 HLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE----TGITQVI 196
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
++H+ + +++V E G
Sbjct: 197 VTHEVEVARKTASRVVYMENG 217
|
Length = 242 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 55/225 (24%), Positives = 95/225 (42%), Gaps = 47/225 (20%)
Query: 100 LENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ ++S SY K + L+DV+ + GE V ++G +G GKTT L +IAG P G++
Sbjct: 6 VSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLN 65
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
+I E V +++ + + +L ++KA
Sbjct: 66 --GRRIEGPGAERGVVFQNEALLPWLNV-IDNVAFGLQLRGIEKA--------------- 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
QR+ A +++ +G + + S G + R+ + + L +
Sbjct: 108 ------QRREIA----------HQMLALVGL-EGAEHKYIWQLSGGMRQRVGIARALAVE 150
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 151 PQLLLLDEPFGALDALTREQMQELLLDLWQETGKQ---VLLITHD 192
|
Length = 259 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 79/414 (19%), Positives = 161/414 (38%), Gaps = 100/414 (24%)
Query: 99 KLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKT----TQLRIIAGQEEPD 150
+ N+S ++ V +K ++++++ GE + LVG +G+GK+ + L ++ P
Sbjct: 8 SIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL-----PS 62
Query: 151 SGNVIKAKSNMKIAFLSQEFEVSMSRT---VREEFMSA-FKEEMEIAGKLERVQKALESA 206
+ S I F ++ + R VR + F+E M L + K L
Sbjct: 63 PAAAHPSGS---ILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV 119
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF----SS 262
+ R + ++ A+ +L+ +G + ++ + ++ S
Sbjct: 120 L-----------------RLHRGLSRAAARARALELLELVGI--PEPEKRLDAYPHELSG 160
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
G + R+ + L +PDLL+ DEPT LD LD ++ L+ LG + ++ I+HD
Sbjct: 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELG---MAILFITHD 217
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINR 375
+ + ++ YV++ +E+ + T+ L+
Sbjct: 218 LGIVRKFADRV-----------------YVMQHGEIVETGTTETLFAAPQHPYTRKLLAA 260
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG----RSGRSVVTIKNLE 431
+G A LE + +++ FP +G R+ + + +
Sbjct: 261 EPSGDPPPLPEDAPVLLE-------------VEDLRVWFPIKGGFLRRTVDHLRAVDGI- 306
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+LT+ RG+ ++G +G GKSTL ++ L +G G+
Sbjct: 307 ------------SLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQGEIRFDGQ 348
|
Length = 534 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 34/138 (24%), Positives = 60/138 (43%), Gaps = 15/138 (10%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y + + +LT+ G ++GPNG GK+TL++++ L P G + +
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRID 59
Query: 485 EHNVL--PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
+VL P + Q + + TV E + A I + +L N
Sbjct: 60 GQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 532 FKADMLDRKVSLLSGGEK 549
D +K+ LSGG +
Sbjct: 120 L-GDRAKKKIGSLSGGMR 136
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 27/135 (20%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP------ 490
RL+ + ++T G T ++GPNG GKSTLL+L+ G +P G V L ++
Sbjct: 14 RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRAR 73
Query: 491 ----NYFEQNQAEALDLDKTVLETVA------------EAAEDWRIDDIKGLLGRCNFKA 534
EQ+ A+ L TV + VA ++ D + D L R +
Sbjct: 74 ARRVALVEQDSDTAVPL--TVRDVVALGRIPHRSLWAGDSPHDAAVVD--RALARTEL-S 128
Query: 535 DMLDRKVSLLSGGEK 549
+ DR +S LSGGE+
Sbjct: 129 HLADRDMSTLSGGER 143
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 3e-10
Identities = 42/141 (29%), Positives = 59/141 (41%), Gaps = 26/141 (18%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ NL Y + +L + +GE T ++G NG GK+TLLK +MGL + G + L
Sbjct: 2 EVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDG 61
Query: 486 HNV--LP---------NYFEQNQAEALDLDKTV---LETVAEA---AEDWRIDDIKGLLG 528
++ LP Y Q + L TV L T A D+I L
Sbjct: 62 EDITKLPPHERARAGIAYVPQGREIFPRL--TVEENLLTGLAALPRRSRKIPDEIYEL-- 117
Query: 529 RCNFKA--DMLDRKVSLLSGG 547
F +ML R+ LSGG
Sbjct: 118 ---FPVLKEMLGRRGGDLSGG 135
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.5 bits (147), Expect = 3e-10
Identities = 25/60 (41%), Positives = 39/60 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + + Y +R + N+ +L I G+ A++G +GCGKSTLL+L+ GLE P GE+L G
Sbjct: 13 LLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAG 72
|
Length = 257 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 48/205 (23%), Positives = 95/205 (46%), Gaps = 46/205 (22%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ E++ YK G +L +++ +K GE VG+VG +G+GK+T ++I P++G V+
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 156 KAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
++ + A+L ++ V + +R++R+ A + +ERV +A
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALA-----DPGMSMERVIEA---- 111
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
+L D + +PE G+ G++ A S G +
Sbjct: 112 -------AKLAGAHDFISE-----------------LPE-GYDTIVGEQ-GAGLSGGQRQ 145
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L+ +P +L+ DE T+ LD
Sbjct: 146 RIAIARALIHNPRILIFDEATSALD 170
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 3e-10
Identities = 43/155 (27%), Positives = 77/155 (49%), Gaps = 29/155 (18%)
Query: 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474
+ ++ ++ I+NL ++ + + +LTI +GE A++G +GCGKSTLL+++ G E
Sbjct: 10 AKTRKALTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFE 69
Query: 475 KPRGGEVLLGEHNV--LPNY------------------FEQNQAEALDLDKTVLETVAEA 514
+P G+++L ++ +P Y EQN A L DK + +A
Sbjct: 70 QPTAGQIMLDGVDLSHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK-----LPKA 124
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
R++++ GL+ F RK LSGG++
Sbjct: 125 EIASRVNEMLGLVHMQEFAK----RKPHQLSGGQR 155
|
Length = 377 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 3e-10
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 48/229 (20%)
Query: 102 NISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
N+ K Y+ VL +V++ + +GE + +VG +G+GK+T L ++ G + P SG+VI
Sbjct: 10 NLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI-- 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREE-------FMSAFKEEMEIAGKLERVQKALESAVDDM 210
F Q +S + E F+ F + LE V L
Sbjct: 68 -------FNGQPMS-KLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPL------- 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
L+G+ ++ A+ +++ +++ +G R + S G + R+++
Sbjct: 113 -LIGK--------KKPAEI------NSRALEMLAAVGLEHRANHR-PSELSGGERQRVAI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLG-KQDVPMVIISHD 315
+ L+ +P L+L DEPT +LD D+I L G L Q ++++HD
Sbjct: 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHD 205
|
Length = 233 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.1 bits (151), Expect = 4e-10
Identities = 65/231 (28%), Positives = 107/231 (46%), Gaps = 31/231 (13%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ NISKS+ GV L +V +V+ L+G NGAGK+T L+ + G + DSG+++
Sbjct: 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSIL---- 56
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
F +E + S+ E +S +E+ + L+R S +D+M L GR
Sbjct: 57 -----FQGKEIDFKSSKEALENGISMVHQELNLV--LQR------SVMDNMWL-GR---- 98
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM-SLGKILLQDP 278
K V+ D + + EL D + VA+ S QM+M + K +
Sbjct: 99 ---YPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAK-VATLSVS-QMQMIEIAKAFSYNA 153
Query: 279 DLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326
++++DEPT+ L + L + K + +V ISH + QLC +I
Sbjct: 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEI 204
|
Length = 491 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 23/144 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+TI+N+ Y +++ + +L I +G T+IIGPNG GKSTLL ++ L K GE+ +
Sbjct: 2 ITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITID 61
Query: 485 EHNVLPNYFEQNQAEALDLDK---------TVLETVA----------EAAEDWRIDDIKG 525
+ + + A+ L + K TV + V ED RI I
Sbjct: 62 GLEL-TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRI--INE 118
Query: 526 LLGRCNFKADMLDRKVSLLSGGEK 549
+ + + D+ DR + LSGG++
Sbjct: 119 AIEYLHLE-DLSDRYLDELSGGQR 141
|
Length = 252 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 59/236 (25%), Positives = 104/236 (44%), Gaps = 39/236 (16%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIK 156
K++++ S + +LK V VKKGE ++G NG+GK+T + IAG E SG ++
Sbjct: 2 KIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILF 61
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQKALES-----AVDD 209
++ E+ R AF+ EI G LE ++ AL + +
Sbjct: 62 KGQDL--------LELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEP 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+DL+ D LL+ K + +D S + FS G + R
Sbjct: 114 LDLL----DFLKLLKAKLALLGMDEEFLNRS---------------VNEGFSGGEKKRNE 154
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322
+ ++ L +P L +LDE + LD+D ++ + + + D +II+H + L+ +
Sbjct: 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 5e-10
Identities = 51/258 (19%), Positives = 103/258 (39%), Gaps = 66/258 (25%)
Query: 99 KLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++N+S S+ V + V++E+KKGE +G+VG +G+GK+ + I G P
Sbjct: 3 EVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMG-LLPKPNAR 61
Query: 155 IKAKS----NMKIAFLSQEF-------EVSM-----------SRTVREEFMSAFKEEMEI 192
I + LS++ E++M T+ ++ + +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKG 121
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
K E ++A+E LL+ V + + + K P
Sbjct: 122 LSKKEAKERAIE-----------------LLEL----VGIPDPE-RRLKSYPH------- 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVP 308
S G + R+ + L +P LL+ DEPT LD+ ++ L+ ++
Sbjct: 153 ------ELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTA 206
Query: 309 MVIISHDRAFLDQLCTKI 326
+++I+HD + ++ ++
Sbjct: 207 LILITHDLGVVAEIADRV 224
|
Length = 316 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 27/65 (41%), Positives = 38/65 (58%), Gaps = 4/65 (6%)
Query: 420 SGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
SG + + + F Y L+ + +L IE GE AI+GP+G GKSTLL+L++G E P
Sbjct: 449 SGA--IEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPE 506
Query: 478 GGEVL 482
G V
Sbjct: 507 SGSVF 511
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 26/148 (17%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y R + +LTI G+ A++G +GCGKST++ L+ P GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 482 LLGEHNVL-----------------PNYFEQNQAE--ALDLDKTVLETVAEAAEDWRIDD 522
LL ++ P F+ AE E V EAA+ I D
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 523 -IKGLLGRCNFKADMLDRKVSLLSGGEK 549
I L + ++ + S LSGG+K
Sbjct: 121 FIMSLPDGYD---TLVGERGSQLSGGQK 145
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 5e-10
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ +NL ++R+LF+ + T+ GE I GPNG GK++LL+++ GL +P GEVL
Sbjct: 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLW 60
|
Length = 204 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 5e-10
Identities = 51/237 (21%), Positives = 107/237 (45%), Gaps = 22/237 (9%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
++ K Y VLK V+ + G+ + ++G +G+GK+T LR I E+P G+++
Sbjct: 10 DLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQT- 68
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+++ R + A K ++ + ++ L +L + +
Sbjct: 69 ----------INLVRDKDGQLKVADKNQLRL------LRTRLTMVFQHFNLWSHMTVLEN 112
Query: 222 LLQRKAQAVNLDTLDAK--VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+++ Q + L +A+ K + ++G + S G Q R+S+ + L +P+
Sbjct: 113 VMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPE 172
Query: 280 LLLLDEPTNHLDLDTI-EWLE--GYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333
+LL DEPT+ LD + + E L L ++ MV+++H+ F + + ++ G
Sbjct: 173 VLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229
|
Length = 257 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 6e-10
Identities = 55/207 (26%), Positives = 92/207 (44%), Gaps = 44/207 (21%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G + K++ + + ++ +VG NG GK+T L++I+G+ +P SG V +
Sbjct: 521 GPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFR------------ 568
Query: 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228
S VR M+ F + VD +DL L + R
Sbjct: 569 ------SAKVR---MAVFSQHH----------------VDGLDLSSNPLL---YMMRCFP 600
Query: 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
V + K+ + G T + + + + S G + R++ KI + P +LLLDEP+N
Sbjct: 601 GV----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSN 656
Query: 289 HLDLDTIEWLEGYLGKQDVPMVIISHD 315
HLDLD +E L L ++++SHD
Sbjct: 657 HLDLDAVEALIQGLVLFQGGVLMVSHD 683
|
Length = 718 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 6e-10
Identities = 50/219 (22%), Positives = 84/219 (38%), Gaps = 56/219 (25%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV-----REEF 182
L G +G+GKT+ + +IAG PD G + L+ V + + +
Sbjct: 29 LFGPSGSGKTSLINMIAGLTRPDEGRIE----------LNGRVLVDAEKGIFLPPEKRRI 78
Query: 183 MSAFKE-----EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
F++ + G L S D + LL LL R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGMWK--SMRAQFDQLVALLGIEHLLDR------------ 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT--- 294
P + S G + R+++G+ LL P+LLL+DEP LDL
Sbjct: 125 -----YPG-------------TLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRE 166
Query: 295 -IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+ +LE + ++P++ +SH + +L ++V E G
Sbjct: 167 ILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-10
Identities = 58/249 (23%), Positives = 120/249 (48%), Gaps = 40/249 (16%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
V+ +++K + +TVL + + V GEKV L+G +G+GK+T LRI+ E D G + ++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL-----ESAVDDMD 211
+ + + + + +R ++ K+ V ++ ++ +D++
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLR-----------QMRNKIGMVFQSFNLFPHKTVLDNVT 109
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L+ L +A+A + + +L+ +G AD D + A S G Q R+++
Sbjct: 110 EAPVLV----LGMARAEA------EKRAMELLDMVGL-ADKADHMPAQLSGGQQQRVAIA 158
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD----RAFLDQLC 323
+ L P ++L DE T+ LD + + + + + D+ M++++H+ R F D++C
Sbjct: 159 RALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVC 218
Query: 324 ----TKIVE 328
+IVE
Sbjct: 219 FFDKGRIVE 227
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 7e-10
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I N++ + + +L I+ GE A++GP+G GKSTLL++I GLE P G + L
Sbjct: 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLN 62
|
Length = 345 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 7e-10
Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
KN+ + + + + GE AI+GPNG GK+TLL L+ G P G+V LLG
Sbjct: 35 KNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGR 93
|
Length = 257 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 7e-10
Identities = 51/195 (26%), Positives = 78/195 (40%), Gaps = 49/195 (25%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSNM 161
+LK+V+ K GE + ++G +GAGKTT + +A + G I AK
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMR 98
Query: 162 KIAFLSQEFEVSM-SRTVREE--FMSAFK--EEMEIAGKLERVQKALESAVDDMDLMGRL 216
I+ Q+ ++ + + TVRE F + + + K ERV + L+ + L
Sbjct: 99 AISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQ----ALGL---- 150
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
RK +T G V S G + R++ LL
Sbjct: 151 --------RKCA----NTR-------------IGVPGR--VKGLSGGERKRLAFASELLT 183
Query: 277 DPDLLLLDEPTNHLD 291
DP LL DEPT+ LD
Sbjct: 184 DPPLLFCDEPTSGLD 198
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 60/239 (25%), Positives = 96/239 (40%), Gaps = 63/239 (26%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRIIAGQEEPDSGNVIKAKSNMKIAFL 166
V+K++++ ++ GE +GLVG +G+GK+T LR+I Q E I F
Sbjct: 300 VVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQGE--------------IWFD 345
Query: 167 SQEFEVSMSRT---VREEFMSAFKE-----------EMEIAGKLERVQKALESAVDDMDL 212
Q R VR F++ I L Q L +A
Sbjct: 346 GQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAA------ 399
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
QR+ Q V +M E+G + R A FS G + R+++ +
Sbjct: 400 -----------QREQQ----------VIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIAR 438
Query: 273 ILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
L+ P L++LDEPT+ LD + L+ K + + ISHD + LC +++
Sbjct: 439 ALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVI 497
|
Length = 529 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 8e-10
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + D A +L++ +GE IIG +G GKSTL++ I GLE+P G
Sbjct: 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG 60
Query: 480 EVLL-GEHNVLPNYFEQNQAEA----------LDLDKTVLETVAEAAEDW---------R 519
VL+ G L + E +A L +TV E VA E R
Sbjct: 61 SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEER 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ ++ L+G D D + LSGG+K
Sbjct: 121 VLELLELVGL----EDKADAYPAQLSGGQK 146
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 8e-10
Identities = 55/247 (22%), Positives = 101/247 (40%), Gaps = 54/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
+ L+ + Y+ + + D+ V GE V ++G +GAGK+T L +IAG EP SG++ +
Sbjct: 1 LALDKVRYEYEHLPMEFDLN--VADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVN 58
Query: 157 AKSNMKIA-------FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+S+ +A L QE + TVR+ + KL Q+
Sbjct: 59 DQSHTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGL----KLNAEQQEKVVDA-- 112
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
AQ V + D DRL S G + R++
Sbjct: 113 -----------------AQQVGIA-----------------DYLDRLPEQLSGGQRQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
L + L++ +LLLDEP + LD + + ++ ++ +++++H + + ++
Sbjct: 139 LARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198
Query: 326 IVETEMG 332
I G
Sbjct: 199 IAVVSQG 205
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.6 bits (144), Expect = 8e-10
Identities = 46/141 (32%), Positives = 63/141 (44%), Gaps = 21/141 (14%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL-GEH 486
+ L GY + + I G TAIIGPNGCGKSTLL+ + L P G V L GEH
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 487 NVLPNYFEQNQAEALDL---------DKTVLETVAEAA-------EDWRIDDIKGLLG-- 528
+ +Y + A + L D TV E VA WR +D + +
Sbjct: 71 --IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAM 128
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+ + D+ V LSGG++
Sbjct: 129 QATGITHLADQSVDTLSGGQR 149
|
Length = 265 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 8e-10
Identities = 38/127 (29%), Positives = 53/127 (41%), Gaps = 26/127 (20%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG------------EHNVLPN 491
N ERGE A++G NG GKSTLL + GL +P+ G VL+ E
Sbjct: 12 NFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVG 71
Query: 492 YFEQNQAEALDLDKTVLETVA---------EAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q+ + L V + VA EA + R+ + +G + +R
Sbjct: 72 LVFQDPDDQL-FAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLR----ERPTH 126
Query: 543 LLSGGEK 549
LSGGEK
Sbjct: 127 CLSGGEK 133
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 9e-10
Identities = 42/128 (32%), Positives = 59/128 (46%), Gaps = 37/128 (28%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------------VLP 490
+L + GE ++GP+GCGKSTLL+++ GLE+ GE+ +G V
Sbjct: 24 DLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVFQ 83
Query: 491 NY-------FEQNQAEALD---LDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
NY +N A L + K +E VAEAA RI ++ +LDR
Sbjct: 84 NYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAA---RILEL----------EPLLDR 130
Query: 540 KVSLLSGG 547
K LSGG
Sbjct: 131 KPRELSGG 138
|
Length = 356 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 1e-09
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ ++N+ F Y + + I GE AI+G NG GKST+ K++ GL KP+ GE
Sbjct: 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE 65
Query: 481 VLL 483
+ +
Sbjct: 66 IKI 68
|
Length = 271 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-09
Identities = 60/234 (25%), Positives = 102/234 (43%), Gaps = 42/234 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + +S Y + L +V+ + +GE V L+G NGAGKTT L + G SG ++
Sbjct: 6 LSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIV-- 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
F ++ ++ +T + +E + I + RV + V++ MG
Sbjct: 64 -------FDGKD--ITDWQTAK-----IMREAVAIVPEGRRVFSRM--TVEENLAMGGFF 107
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
E D Q + V +L P L + + + S G Q +++G+ L+
Sbjct: 108 AERDQFQERI---------KWVYELFPRL---HERRIQRAGTMSGGEQQMLAIGRALMSQ 155
Query: 278 PDLLLLDEPTNHLD-------LDTIEWL--EG---YLGKQDVPMVIISHDRAFL 319
P LLLLDEP+ L DTIE L +G +L +Q+ + DR ++
Sbjct: 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYV 209
|
Length = 237 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 1e-09
Identities = 52/189 (27%), Positives = 79/189 (41%), Gaps = 46/189 (24%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IKAKSNMKIAFLSQEF 170
V + + V GE + + G NGAGKTT LR++AG +SG + I K+
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA---------- 75
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+R R FM+ G L ++ L S ++++
Sbjct: 76 ----TRGDRSRFMAYL-------GHLPGLKADL-STLENLHF------------------ 105
Query: 231 NLDTLDAKVSKLMPELGFT----ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286
L L + +K MP A D LV S+G + R++L ++ L L LLDEP
Sbjct: 106 -LCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEP 164
Query: 287 TNHLDLDTI 295
+LDL+ I
Sbjct: 165 YANLDLEGI 173
|
Length = 214 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 1e-09
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 18/144 (12%)
Query: 423 SVVTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
S++ KN+ F Y+ F + I +G+ T+I+G NG GKST+ KL++G+EK + GE
Sbjct: 6 SIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 481 VLLGEHNVLPNYFE----------QNQAEALDLDKTVLETVAEAAEDWRI--DDIKGLLG 528
+ + + FE QN + + V VA E+ + D++ +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQN-PDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVS 124
Query: 529 RCNFKADMLDRKVS---LLSGGEK 549
+ DML+R LSGG+K
Sbjct: 125 EALKQVDMLERADYEPNALSGGQK 148
|
Length = 269 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 39/138 (28%), Positives = 61/138 (44%), Gaps = 19/138 (13%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
++N+ + D + N + ++ GE I GP+GCGKSTLLK++ L P G +L
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 487 NVL---PNYFEQN-----QAEALDLDKTVLETVAEAAEDWRI-------DDIKGLLGRCN 531
++ P + Q Q L D TV + + W+I L R
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFP---WQIRNQQPDPAIFLDDLERFA 125
Query: 532 FKADMLDRKVSLLSGGEK 549
+L + ++ LSGGEK
Sbjct: 126 LPDTILTKNIAELSGGEK 143
|
Length = 225 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 58.2 bits (141), Expect = 1e-09
Identities = 54/215 (25%), Positives = 89/215 (41%), Gaps = 53/215 (24%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-------KAKSNMKIAF 165
LK V +++GE + L+G +G GK+T L +I+G +P SG VI + + + F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD-MDLMGRLLDEFDLLQ 224
Q + + TVRE A + K ER + V++ + L+G L
Sbjct: 61 --QNYSLLPWLTVRENIALAVDRVLPDLSKSER-----RAIVEEHIALVG--------LT 105
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
A D+ S G + R+++ + L P +LLLD
Sbjct: 106 EAA--------------------------DKRPGQLSGGMKQRVAIARALSIRPKVLLLD 139
Query: 285 EPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
EP LD T L+ L + V +++++HD
Sbjct: 140 EPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHD 174
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 1e-09
Identities = 53/208 (25%), Positives = 94/208 (45%), Gaps = 30/208 (14%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
++G+ +GLVG NG GK+T L+I+AG+ +P+ G +I F E + ++
Sbjct: 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237
+ + K + ++ + KA++ V +LL++K + LD L
Sbjct: 83 LEGDVKVIVKPQY-----VDLIPKAVKGKVG------------ELLKKKDERGKLDEL-V 124
Query: 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD---T 294
+L L DR + S G R+++ L +D D DEP+++LD+
Sbjct: 125 DQLELRHVL-------DRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLN 177
Query: 295 IEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L L + D ++++ HD A LD L
Sbjct: 178 AARLIRELAEDDNYVLVVEHDLAVLDYL 205
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 2e-09
Identities = 36/158 (22%), Positives = 58/158 (36%), Gaps = 30/158 (18%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ ++NL + A + +E GE I+G +G GKSTL +MGL
Sbjct: 3 SPLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEG 62
Query: 478 G----GEVLLGEHNVLPN--------------YFEQNQAEALDLDKTVLETVAEA----- 514
G GEV+L ++L Q+ +L+ T+ + + EA
Sbjct: 63 GRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHG 122
Query: 515 --AEDWRIDDIKGLLGRCNFKADML-DRKVSLLSGGEK 549
+ LL + DR LSGG +
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMR 160
|
Length = 539 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.9 bits (145), Expect = 2e-09
Identities = 54/240 (22%), Positives = 112/240 (46%), Gaps = 36/240 (15%)
Query: 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENIS----KSYKGVTVLK 114
I +A++ +E F F+ ++ ++ ++ V+ +I+ S +GV
Sbjct: 299 IFEARAKLEDFFDLEDSVFQREEPADAPE---LPNVKGAVEFRHITFEFANSSQGV---F 352
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
DV++E K G+ V +VG GAGKTT + ++ +P G ++ + I +++E S+
Sbjct: 353 DVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID--INTVTRE---SL 407
Query: 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234
+++ F A I E ++ E A D+ ++ + A D
Sbjct: 408 RKSIATVFQDAGLFNRSIR---ENIRLGREGATDE-----------EVYEAAKAAAAHDF 453
Query: 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ + + +G + G+RL S G + R+++ + +L++ +L+LDE T+ LD++T
Sbjct: 454 ILKRSNGYDTLVG---ERGNRL----SGGERQRLAIARAILKNAPILVLDEATSALDVET 506
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.0 bits (145), Expect = 2e-09
Identities = 59/234 (25%), Positives = 104/234 (44%), Gaps = 36/234 (15%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++L ++K Y G + + + V+ GE GL+GVNGAGKTT +++ G SG+
Sbjct: 1938 LRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDAT 1997
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
A ++ L+ +V + +F A+DD+ L GR
Sbjct: 1998 VAGKSI----LTNISDVHQNMGYCPQF----------------------DAIDDL-LTGR 2030
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
E L + + V + ++ + + LG + DRL ++S G + ++S L+
Sbjct: 2031 ---EHLYLYARLRGVPAEEIEKVANWSIQSLGLSL-YADRLAGTYSGGNKRKLSTAIALI 2086
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
P L+LLDEPT +D L + ++ +V+ SH + LCT++
Sbjct: 2087 GCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRL 2140
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 3e-09
Identities = 39/128 (30%), Positives = 60/128 (46%), Gaps = 27/128 (21%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L++++GE A++G NG GKSTL+K++ GL +P GE+ + V + +A+ L
Sbjct: 24 SLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIK----SPRDAIRL 79
Query: 504 ------------DK-TVLETVA---EAAEDWRID------DIKGLLGRCNFKADMLDRKV 541
TV E + E ++ ID IK L R D D KV
Sbjct: 80 GIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVD-PDAKV 138
Query: 542 SLLSGGEK 549
+ LS GE+
Sbjct: 139 ADLSVGEQ 146
|
Length = 501 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 3e-09
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 42/214 (19%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI--AFLSQEFEVSMSRT 177
+ G+ VG++G NG GK+T L+I+AG+ +P+ G S ++ F E + +
Sbjct: 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYFKKL 156
Query: 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDM----DLMGRLLDEFDLLQRKAQAVNLD 233
E + K + ++ + K ++ V ++ D G+ + + L L+
Sbjct: 157 YEGELRAVHKPQY-----VDLIPKVVKGKVGELLKKVDERGKFDEVVERL-------GLE 204
Query: 234 -TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD- 291
LD VS+L S G R+++ LL+D D+ DEP+++LD
Sbjct: 205 NVLDRDVSEL------------------SGGELQRVAIAAALLRDADVYFFDEPSSYLDI 246
Query: 292 ---LDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
L+ + + ++++ HD A LD L
Sbjct: 247 RQRLNAARVIRELA-EDGKYVIVVEHDLAVLDYL 279
|
Length = 591 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 3e-09
Identities = 61/262 (23%), Positives = 118/262 (45%), Gaps = 35/262 (13%)
Query: 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+G+ + +++ +++ G T L+D ++ V G LVGVNG+GK+T + + G SG
Sbjct: 4 QAGIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGK 63
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I+ L Q + +++ ++ + E V + V+D+ +M
Sbjct: 64 ---------ISILGQ----PTRQALQKNLVAYVPQS-------EEVDWSFPVLVEDVVMM 103
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVASFSSGWQMRMSLGK 272
GR L R+A+ + + A ++++ M E R + S G + R+ L +
Sbjct: 104 GR-YGHMGWL-RRAKKRDRQIVTAALARVDMVEFRH------RQIGELSGGQKKRVFLAR 155
Query: 273 ILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLC--TKIV 327
+ Q ++LLDEP +D+ T I L L + M++ +H+ + + C T +V
Sbjct: 156 AIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV 215
Query: 328 ETEMGVSRTYEGNYSQYVLEKA 349
+ + S E ++ LE A
Sbjct: 216 KGTVLASGPTETTFTAENLELA 237
|
Length = 272 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 3e-09
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ F Y+ R + + TI G+K AI+GP+G GKST+L+L+ G +L+
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 484 GEHNV 488
++
Sbjct: 61 DGQDI 65
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 4e-09
Identities = 25/73 (34%), Positives = 43/73 (58%), Gaps = 2/73 (2%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
S + +NL Y+ R + N +L + GE ++GPNG GK+T +I+GL +P G++
Sbjct: 2 MSTLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI 61
Query: 482 LLGEHNV--LPNY 492
LL + ++ LP +
Sbjct: 62 LLDDEDITKLPMH 74
|
Length = 243 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 60/249 (24%), Positives = 100/249 (40%), Gaps = 33/249 (13%)
Query: 101 ENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
N+SK++ GV VL++V+ V GE V L G +G+GK+T LR + PD G
Sbjct: 8 SNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQ 67
Query: 154 VIKAKSNMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
++ + ++ E EV R ++S F + L+ V + L
Sbjct: 68 ILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPL--------- 118
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
A+ V + AK + L+ L A+FS G Q R+++ +
Sbjct: 119 -------------LARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIAR 165
Query: 273 ILLQDPDLLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
+ D +LLLDEPT LD + L + +V I HD + + ++++
Sbjct: 166 GFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDV 225
Query: 330 EMGVSRTYE 338
R
Sbjct: 226 SAFSPRKEA 234
|
Length = 235 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 42/139 (30%), Positives = 64/139 (46%), Gaps = 25/139 (17%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488
+GY +L + +LTI+ KT I+G +G GKSTL KL++G + R GE+LL ++
Sbjct: 483 YGYGSNILSD-ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDI 541
Query: 489 -------LPNYFEQNQAEALDLDKTVLET-VAEAAEDWRIDDIKGLLGRCNFKADM---- 536
NY Q E ++LE + A E+ D+I K D+
Sbjct: 542 DRHTLRQFINYLPQ---EPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMP 598
Query: 537 ------LDRKVSLLSGGEK 549
L + S +SGG+K
Sbjct: 599 LGYQTELSEEGSSISGGQK 617
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 42/132 (31%), Positives = 56/132 (42%), Gaps = 37/132 (28%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL--GEHNVLP--------- 490
R +LT+ERGE+ AI+GP+G GKSTLL LI G P G + L +H P
Sbjct: 17 RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSML 76
Query: 491 ----NYF-----EQNQAEALD----LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADML 537
N F QN L+ L+ E + A I+ D+L
Sbjct: 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE-------------DLL 123
Query: 538 DRKVSLLSGGEK 549
R LSGG++
Sbjct: 124 ARLPGQLSGGQR 135
|
Length = 232 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 5e-09
Identities = 52/209 (24%), Positives = 89/209 (42%), Gaps = 56/209 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
++ E++SK+Y G L+ VT+ ++ GE L G +GAGK+T L++I G E P +G +
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 155 ----IKAKSNMKIAFLS-------QEFEVSMSRTVREEFMSAFKEEMEIAG-KLERVQKA 202
I N ++ FL Q+ + M RTV + + IAG + +++
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIP----LIIAGASGDDIRRR 117
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ +A+D + L+ D S
Sbjct: 118 VSAALDKVGLL-------------------------------------DKAKNFPIQLSG 140
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G Q R+ + + ++ P +LL DEPT +LD
Sbjct: 141 GEQQRVGIARAVVNKPAVLLADEPTGNLD 169
|
Length = 222 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.9 bits (136), Expect = 5e-09
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 5/65 (7%)
Query: 425 VTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++++ F ++ NL + +GE AI+GP G GKS+LL ++G + G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 480 EVLLG 484
V +
Sbjct: 61 SVSVP 65
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 6e-09
Identities = 36/128 (28%), Positives = 58/128 (45%), Gaps = 22/128 (17%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY------ 492
+ +L I +GE + GP+G GK+TLLKL+ G P G+V + +V L
Sbjct: 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLR 78
Query: 493 ------FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSL- 543
F+ + L D+TV E VA E + +I+ +G + + + +
Sbjct: 79 RRIGVVFQDFR---LLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFP 135
Query: 544 --LSGGEK 549
LSGGE+
Sbjct: 136 EQLSGGEQ 143
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 39/126 (30%), Positives = 51/126 (40%), Gaps = 31/126 (24%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP----------NYF 493
+ + GE ++GPNG GKSTLL + GL P G + + Y
Sbjct: 16 SAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAYL 74
Query: 494 EQNQAEA--------LDL---DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
Q Q L L DKT E VA A ++++ LG D L R V+
Sbjct: 75 SQQQTPPFAMPVFQYLTLHQPDKTRTEAVASA-----LNEVAEALGL----DDKLGRSVN 125
Query: 543 LLSGGE 548
LSGGE
Sbjct: 126 QLSGGE 131
|
Length = 248 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 56.0 bits (136), Expect = 7e-09
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 20/142 (14%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ +NL Y R + N +L++++GE ++GPNG GK+T +I+GL KP G++LL
Sbjct: 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLD 60
Query: 485 EHNV--LP---------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLL 527
++ LP Y Q + L TV E + E R + ++ LL
Sbjct: 61 GQDITKLPMHKRARLGIGYLPQEASIFRKL--TVEENILAVLEIRGLSKKEREEKLEELL 118
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
+ + K S LSGGE+
Sbjct: 119 EEFHITH-LRKSKASSLSGGER 139
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 7e-09
Identities = 42/154 (27%), Positives = 64/154 (41%), Gaps = 35/154 (22%)
Query: 424 VVTIKNLEFGYEDRL-----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ ++N+ + + +L I +GE IIG +G GKSTLL+LI LE+P
Sbjct: 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTS 60
Query: 479 GEVLLGEHNV--LPNY----FEQN-----QAEALDLDKTVLETVAEAAEDWRID------ 521
G V + ++ L Q Q L +TV E VA E +
Sbjct: 61 GSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQ 120
Query: 522 ------DIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ GL +D DR + LSGG+K
Sbjct: 121 RVAELLELVGL-------SDKADRYPAQLSGGQK 147
|
Length = 339 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 7e-09
Identities = 24/43 (55%), Positives = 32/43 (74%), Gaps = 1/43 (2%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
L ++RGE AI+GP+G GKSTLL ++ GL+ P GEV LLG+
Sbjct: 30 ELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQ 72
|
Length = 228 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 7e-09
Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 10/96 (10%)
Query: 464 STLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEA 514
STLLKLI GL +P G +LL + + Q L + TV E +
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 515 A-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + L R + V LSGG+K
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQK 96
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 49/202 (24%), Positives = 82/202 (40%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ L+++ SY + + D+T V GE V ++G +GAGK+T L +IAG E P SG ++
Sbjct: 2 LALDDVRFSYGHLPMRFDLT--VPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILIN 59
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ ++ L QE + TV + + KL Q+
Sbjct: 60 GVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL----KLNAEQR-------- 107
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ ++ A V L RL S G + R++
Sbjct: 108 -----------EKVEAAAAQVGLAGFL-----------------KRLPGELSGGQRQRVA 139
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L + L+++ +LLLDEP + LD
Sbjct: 140 LARCLVREQPILLLDEPFSALD 161
|
Length = 231 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 53/202 (26%), Positives = 94/202 (46%), Gaps = 35/202 (17%)
Query: 98 VKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
V+ +++S SY ++DV++E K G+ V +VG GAGK+T + ++ +P SG I
Sbjct: 335 VEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RIL 393
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM----EIAGKLERVQKALESAVDDMDL 212
I +++ ++R F++ I + RV + A D
Sbjct: 394 I-DGTDIRTVTRA-------SLRRNIAVVFQDAGLFNRSIEDNI-RVGR--PDATD---- 438
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+E +AQA D ++ K G+ G+R S G + R+++ +
Sbjct: 439 -----EEMRAAAERAQA--HDFIERK------PDGYDTVVGER-GRQLSGGERQRLAIAR 484
Query: 273 ILLQDPDLLLLDEPTNHLDLDT 294
LL+DP +L+LDE T+ LD++T
Sbjct: 485 ALLKDPPILILDEATSALDVET 506
|
Length = 588 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 9e-09
Identities = 25/44 (56%), Positives = 31/44 (70%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
LT +GE TAI+GP+G GKSTLL LI G E P+ G VL+ +V
Sbjct: 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.5 bits (140), Expect = 1e-08
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +LT+ GE A++G NG GKSTL+K++ G+ P GE+L+
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILI 67
|
Length = 500 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.2 bits (139), Expect = 1e-08
Identities = 53/194 (27%), Positives = 85/194 (43%), Gaps = 29/194 (14%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
GVT +KDV++EV+ GE VG+ GV G G++ + I+G +P SG ++
Sbjct: 270 GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILL-----------N 318
Query: 169 EFEVSMSRTVREEFMS--AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK 226
+V + RE A+ E +R L V D+ L L+ +K
Sbjct: 319 GKDVLGRLSPRERRRLGLAYVPE-------DRHGHGL---VLDLSLAENLV--LGRHDKK 366
Query: 227 AQA----VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282
+ ++ + +L+ E A D S S G Q ++ L + L + PDLL+
Sbjct: 367 PFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLI 426
Query: 283 LDEPTNHLDLDTIE 296
+PT LD+ IE
Sbjct: 427 AAQPTRGLDVGAIE 440
|
Length = 501 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 1e-08
Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V KN+ F Y + +L I GE A++GP+G GKSTL+ LI G +L
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 483 LGEHNV 488
+ H+V
Sbjct: 61 IDGHDV 66
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.3 bits (133), Expect = 1e-08
Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 42/226 (18%)
Query: 100 LENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
LE Y +L +++ V+ GE + + G +G GK+T L+I+A P SG ++
Sbjct: 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL-- 61
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL--ESAVDDMDLMGR 215
FE V A+++++ AL ++ D++ +
Sbjct: 62 ------------FE---GEDVSTLKPEAYRQQVSYC----AQTPALFGDTVEDNLIFPWQ 102
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ + R A L S L + + S G + R++L + L
Sbjct: 103 IRN--RRPDRAAALDLLARFALPDSIL-----------TKNITELSGGEKQRIALIRNLQ 149
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIISHDRA 317
P +LLLDE T+ LD +E Y+ +Q+V ++ I+HD+
Sbjct: 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKD 195
|
Length = 223 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 58/251 (23%), Positives = 114/251 (45%), Gaps = 53/251 (21%)
Query: 79 NKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKT 137
+ ++ NK+ T ++++ + + ++S SY G +L D++ +K K +VG++G+GK+
Sbjct: 455 DSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKS 514
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFK 187
T +++ G + SG ++ ++K I +L QE S ++ E + K
Sbjct: 515 TLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQE-PYIFSGSILENLLLGAK 573
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
E + + + A E A D+ + MP LG
Sbjct: 574 ENVSQ----DEIWAACEIAEIKDDI----------------------------ENMP-LG 600
Query: 248 FTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLG 303
+ + +G +S S G + R++L + LL D +L+LDE T++LD T + + L
Sbjct: 601 YQTELSEEG----SSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 304 KQDVPMVIISH 314
QD ++ ++H
Sbjct: 657 LQDKTIIFVAH 667
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-08
Identities = 55/209 (26%), Positives = 87/209 (41%), Gaps = 58/209 (27%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---- 155
L N+S G T+L ++ G+ GL+G NG+GK+T L+++ + P G ++
Sbjct: 14 LRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 156 -----KAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALE 204
+K+ K+A+L Q+ + TVR E + I G L R A
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVR--------ELVAIGRYPWHGALGRFGAADR 125
Query: 205 SAVDD-MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
V++ + L+G L+ A RLV S S G
Sbjct: 126 EKVEEAISLVG--------LKPLAH--------------------------RLVDSLSGG 151
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R + ++ QD LLLDEPT+ LD+
Sbjct: 152 ERQRAWIAMLVAQDSRCLLLDEPTSALDI 180
|
Length = 265 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-08
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 43/238 (18%)
Query: 97 GVKLENISK-----------SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
G KL++I K + K V + KD+ + + +G+ VG +G GK+T L++I
Sbjct: 374 GKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIER 433
Query: 146 QEEPDSGNVIKAKSN-----------MKIAFLSQE---FEVSMSRTVREEFMS-----AF 186
+P G++I S+ KI +SQ+ F S+ ++ S A
Sbjct: 434 LYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEAL 493
Query: 187 KEEMEIAG-----KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVS 240
G + D++ M D +L++ + + + VS
Sbjct: 494 SNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVS 553
Query: 241 KLMPELGFTA---DDGDRLVAS----FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
K + F + D + LV S S G + R+S+ + ++++P +L+LDE T+ LD
Sbjct: 554 KKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLD 611
|
Length = 1466 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 43/146 (29%), Positives = 62/146 (42%), Gaps = 25/146 (17%)
Query: 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L + Y + N N R + A+IGPNG GKSTL + G+ KP G VL
Sbjct: 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 483 L-GEHNVLPNYFE---------QNQAEALDLDKTVLETVA---------EAAEDWRIDDI 523
+ GE N E QN + + TV + +A E R+
Sbjct: 63 IRGEPITKENIREVRKFVGLVFQNPDDQI-FSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+LG ++ DR LSGGEK
Sbjct: 122 LHMLGL----EELRDRVPHHLSGGEK 143
|
Length = 277 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 1e-08
Identities = 54/230 (23%), Positives = 94/230 (40%), Gaps = 59/230 (25%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ ++ Y G L+D+ ++ GE + ++G +G GKTT L +IAG G++
Sbjct: 4 ISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLD-- 61
Query: 160 NMKIAFLSQEFEVSMS-------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
+ E V R V++ AF ++ K++R++ A +
Sbjct: 62 GKPVEGPGAERGVVFQNEGLLPWRNVQDNV--AFGLQLAGVEKMQRLEIAHQ-------- 111
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+L++ V L+ G R + S G + R+ + +
Sbjct: 112 ---------MLKK----VGLE-------------GA----EKRYIWQLSGGQRQRVGIAR 141
Query: 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-------GKQDVPMVIISHD 315
L +P LLLLDEP LD T E ++ L GKQ +++I+HD
Sbjct: 142 ALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQ---VLLITHD 188
|
Length = 255 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 2e-08
Identities = 41/204 (20%), Positives = 83/204 (40%), Gaps = 52/204 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
+++ N+S ++DV++ V+ GE +G+ G+ GAG+T R + G SG +
Sbjct: 264 LEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLD 319
Query: 155 ---IKAKSNMK-----IAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKAL 203
++ +S IA++ ++ + + ++ E ++
Sbjct: 320 GKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIA-ENITL------------------ 360
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
A L+D RK +A+ + + L ++ + + S G
Sbjct: 361 --ASLRRFSRRGLIDR-----RKERAL--------AERYIRRLRIKTPSPEQPIGTLSGG 405
Query: 264 WQMRMSLGKILLQDPDLLLLDEPT 287
Q ++ L + L DP +L+LDEPT
Sbjct: 406 NQQKVVLARWLATDPKVLILDEPT 429
|
Length = 500 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
++ +KNL Y + L + NL I +GE AIIGP+G GKSTLL+ + GL P GE
Sbjct: 2 MMIEVKNLSKTYPGGHQALKD-VNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGE 60
Query: 481 VLLGEHNV 488
+L +
Sbjct: 61 ILFNGVQI 68
|
Length = 258 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
KNL + + N +LT+ + ++GPNG GKSTLLK+I G+ +P GE++ H
Sbjct: 3 TKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGH 62
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 2e-08
Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 9/129 (6%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+V+++N+ + R + + +L ++ G+ ++GPNG GKSTL+++++GL P G V+
Sbjct: 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VI 61
Query: 483 LGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDR 539
+ Y Q L LD T+ TV + +DI L R ++D
Sbjct: 62 KRNGKLRIGYVPQK----LYLDTTLPLTVNRFLRLRPGTKKEDILPALKRVQ-AGHLIDA 116
Query: 540 KVSLLSGGE 548
+ LSGGE
Sbjct: 117 PMQKLSGGE 125
|
Length = 251 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-- 478
+ I +L Y + + +L IE GE A+IG +GCGK+TLL+ I G K G
Sbjct: 2 ACGGIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLT 61
Query: 479 GEVLLGEHNV--LPNY 492
G + + + ++ P +
Sbjct: 62 GRIAIADRDLTHAPPH 77
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 2e-08
Identities = 44/145 (30%), Positives = 63/145 (43%), Gaps = 20/145 (13%)
Query: 411 KIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ R P ++V +L D L I GE I+GPNG GK+T KL+
Sbjct: 327 EERPPRDESERETLVEYPDLTKKLGDFSLEVEGG-EIYEGEVIGIVGPNGIGKTTFAKLL 385
Query: 471 MGLEKPRGGEVLLGEH-NVLPNYFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIK 524
G+ KP GEV + P Y + + D TV + + +D ++ + IK
Sbjct: 386 AGVLKPDEGEVDPELKISYKPQYIKPDY------DGTVEDLLRSITDDLGSSYYKSEIIK 439
Query: 525 GL-LGRCNFKADMLDRKVSLLSGGE 548
L L R +LD+ V LSGGE
Sbjct: 440 PLQLER------LLDKNVKDLSGGE 458
|
Length = 590 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 55/210 (26%)
Query: 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ E ++ +Y L + V+ GE V LVG +GAGK+T +++ +P SG +
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI 397
Query: 155 IKAKSNMK----------IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQK 201
+ +++ +A + Q+ F S+ +R A EE+E A
Sbjct: 398 LLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAA------- 450
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
R A A +S L PE G+ G+R V + S
Sbjct: 451 -----------------------RAAHA------HEFISAL-PE-GYDTYLGERGV-TLS 478
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + +L+D +LLLDE T+ LD
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALD 508
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
L + + R +LTI GE ++GP+GCGK+TLL LI G P G + L +
Sbjct: 11 LSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIE 70
Query: 490 PNYFEQN---QAEALDLDKTVLETVA 512
E+ Q EAL V++ VA
Sbjct: 71 GPGAERGVVFQNEALLPWLNVIDNVA 96
|
Length = 259 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 50/236 (21%), Positives = 94/236 (39%), Gaps = 45/236 (19%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+ + ++ +++G+ +GLVG +G+GK+T + +I F Q+
Sbjct: 300 LRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQG----------EIRFDGQD 349
Query: 170 FEVSMSRTVREEFMSAFKEEMEIA-----GKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
+ + M + M++ G L + + + + L + Q
Sbjct: 350 I-----DGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQ 404
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
R +A + E+G +R FS G + R+++ + L+ P+L+LLD
Sbjct: 405 RVIEA-------------LEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLD 451
Query: 285 EPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD----RAFLDQLCT----KIVE 328
EPT+ LD ++ L K + + ISHD RA ++ KIVE
Sbjct: 452 EPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVE 507
|
Length = 534 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 2e-08
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KNL + +A + +++GE I+G +G GKS L K IMGL
Sbjct: 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNA 60
Query: 480 EVLLGE 485
++ GE
Sbjct: 61 RIVGGE 66
|
Length = 316 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 33/123 (26%), Positives = 49/123 (39%), Gaps = 12/123 (9%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG--EHNVLPNYFE 494
R+LF + T+ GE + GPNG GK+TLL+++ GL +P GEV +
Sbjct: 13 RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPH 72
Query: 495 QNQAEALDLD--KTVLETVAEAAEDWRID------DIKGLLGRCNFKADMLDRKVSLLSG 546
+N L K L + E W I+ L D + LS
Sbjct: 73 RNILYLGHLPGLKPEL-SALENLHFWAAIHGGAQRTIEDALAAVGL-TGFEDLPAAQLSA 130
Query: 547 GEK 549
G++
Sbjct: 131 GQQ 133
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-08
Identities = 29/92 (31%), Positives = 51/92 (55%), Gaps = 6/92 (6%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
I N+ + +L++++GE ++GP+GCGK+TLL++I GLE+ G + G
Sbjct: 7 IDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGR 66
Query: 487 NV--LP----NYFEQNQAEALDLDKTVLETVA 512
++ LP +Y Q+ AL + TV + +A
Sbjct: 67 DITRLPPQKRDYGIVFQSYALFPNLTVADNIA 98
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 3e-08
Identities = 25/62 (40%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
V +KN+ + + + NLTI++G ++GP+GCGK+T+L+L+ GLEKP G++ +
Sbjct: 7 VVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFID 66
Query: 484 GE 485
GE
Sbjct: 67 GE 68
|
Length = 351 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 3e-08
Identities = 49/187 (26%), Positives = 79/187 (42%), Gaps = 40/187 (21%)
Query: 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178
+ GE V + G NGAGKT+ LRI+AG PD+G ++ + + R
Sbjct: 23 TLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG---------EVLWQGEPI-----RRQ 68
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---MGRLLDEFDLLQRKAQAVNLDTL 235
R+E+ ++ G + K +A++++ + D+ L + AQ V L
Sbjct: 69 RDEYHQ----DLLYLGHQPGI-KTELTALENLRFYQRLHGPGDDEALWEALAQ-VGL--- 119
Query: 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI 295
GF D V S+G Q R++L ++ L L +LDEP +D +
Sbjct: 120 ----------AGFE----DVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGV 165
Query: 296 EWLEGYL 302
LE L
Sbjct: 166 ARLEALL 172
|
Length = 204 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 3e-08
Identities = 56/228 (24%), Positives = 89/228 (39%), Gaps = 51/228 (22%)
Query: 73 SADEFENKKYSNKQSNTGASSISSGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGV 131
+A K + + G+ LEN+S ++ G T+L ++ +EV+ GE++ + G
Sbjct: 368 AAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGE 427
Query: 132 NGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEME 191
+GAGKT+ LR +AG SG + ++ + FL Q + T+RE
Sbjct: 428 SGAGKTSLLRALAGLWPWGSGRIS-MPADSALLFLPQRPYLP-QGTLRE----------- 474
Query: 192 IAGKLERVQKAL-----ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246
AL D +L+ L V L L L
Sbjct: 475 ----------ALCYPNAAPDFSDAELVAVL-----------HKVGLG-------DLAERL 506
Query: 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
L S G Q R++ ++LL P + LDE T+ LD +T
Sbjct: 507 DEEDRWDRVL----SGGEQQRLAFARLLLHKPKWVFLDEATSALDEET 550
|
Length = 604 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (129), Expect = 3e-08
Identities = 23/60 (38%), Positives = 33/60 (55%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+F Y D+ L + + + G + G NG GK+TLLKLI GL P GE+L ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
|
Length = 200 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.5 bits (132), Expect = 3e-08
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 5/71 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ +++L Y D+ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 7 AIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVE 66
Query: 479 GEVLLGEHNVL 489
GEVLL N+
Sbjct: 67 GEVLLDGKNIY 77
|
Length = 253 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 4e-08
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
R LF+ + T+ GE + GPNG GK+TLL+++ GL P G VLL
Sbjct: 13 RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLL 59
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 4e-08
Identities = 55/225 (24%), Positives = 93/225 (41%), Gaps = 65/225 (28%)
Query: 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179
K+G+ G++G NG GKTT ++I++G+ P+ G+ + E S ++
Sbjct: 96 PKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEE--------------EPSWDEVLK 141
Query: 180 E----EFMSAFKE----EMEIAGKLERVQ---KALESAVDDMDLMGRLL---DEFDLLQR 225
E + FK+ E+++ K + V K + V LL DE L
Sbjct: 142 RFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKV------RELLKKVDERGKLDE 195
Query: 226 KAQAVNLDT-LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ + L+ LD +S+L S G R+++ LL+D D D
Sbjct: 196 VVERLGLENILDRDISEL------------------SGGELQRVAIAAALLRDADFYFFD 237
Query: 285 EPTNHLDL-------DTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322
EPT++LD+ I L + ++++ HD A LD L
Sbjct: 238 EPTSYLDIRQRLNVARLIREL-----AEGKYVLVVEHDLAVLDYL 277
|
Length = 590 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 51/208 (24%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +N+S Y V +LK ++ + G+ V LVG +G GK+T + ++ +P SG +
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 155 IKAKSNMK----------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
+ +++ I +SQE V T+ E I GK + + +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQE-PVLFDGTIAE----------NIRYGKPDATDEEV 109
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
E A +KA + + L P+ G+ G+R + S G
Sbjct: 110 EEAA-----------------KKANIHDF------IMSL-PD-GYDTLVGER-GSQLSGG 143
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ + LL++P +LLLDE T+ LD
Sbjct: 144 QKQRIAIARALLRNPKILLLDEATSALD 171
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (134), Expect = 4e-08
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+G+KL+ + KSY G T V+K + +V GE + LVG +G GK+T LR++AG E SG
Sbjct: 2 AGLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG 59
|
Length = 356 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 4e-08
Identities = 54/202 (26%), Positives = 86/202 (42%), Gaps = 54/202 (26%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI 163
S + LKD+ EV KGE V +VG G+GK++ L + G+ E SG+V S I
Sbjct: 12 SGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPGS---I 68
Query: 164 AFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
A++SQE + + T+RE F F E ER +K +++ + DL
Sbjct: 69 AYVSQEPWI-QNGTIRENILFGKPFDE--------ERYEKVIKACALEPDL--------- 110
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQ 276
+++P DGD + S G + R+SL + +
Sbjct: 111 -------------------EILP-------DGDLTEIGEKGINLSGGQKQRISLARAVYS 144
Query: 277 DPDLLLLDEPTNHLDLDTIEWL 298
D D+ LLD+P + +D +
Sbjct: 145 DADIYLLDDPLSAVDAHVGRHI 166
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 4e-08
Identities = 52/232 (22%), Positives = 91/232 (39%), Gaps = 64/232 (27%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------- 154
K G + D + KGE ++G++G+GK+T +R++ EP +G +
Sbjct: 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ 60
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
++ KI + Q+F + T+ + ++ E+ + ER +KALE
Sbjct: 61 SPVELREVRRKKIGMVFQQFALFPHMTILQN--TSLGPELLGWPEQERKEKALELL---- 114
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+L+ + E R S G Q R+ L
Sbjct: 115 ----KLVG------------------------LEEY------EHRYPDELSGGMQQRVGL 140
Query: 271 GKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+ L +PD+LL+DE + LD D ++ L+ L K +V I+HD
Sbjct: 141 ARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKT---IVFITHD 189
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 4e-08
Identities = 23/50 (46%), Positives = 31/50 (62%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
++ IKNL + + NL+I +GE AI+GPNG GKSTL K+I G
Sbjct: 6 PILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAG 55
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 26/72 (36%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 425 VTIKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+T + +E Y+ + F R N++I G AIIG G GKSTLL+ + GL +P G
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 480 EVLLGEHNVLPN 491
V +GE +
Sbjct: 63 TVTIGERVITAG 74
|
Length = 290 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 5e-08
Identities = 54/225 (24%), Positives = 90/225 (40%), Gaps = 40/225 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+S G +L +V + + KGE V L+G +G GK+T L + G
Sbjct: 5 LKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIG-------------- 50
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
L+ +F + + E+ + G L Q AL L
Sbjct: 51 -----ALAGQFSCTGELWLNEQRLDMLPAAQRQIGIL--FQDAL------------LFPH 91
Query: 220 FDLLQRKAQAVNLDTL-DAKVSKLMPELGFTADDG--DRLVASFSSGWQMRMSLGKILLQ 276
+ Q A+ +A+ + L + DG + A+ S G + R++L + LL
Sbjct: 92 LSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLA 151
Query: 277 DPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHDRA 317
P LLLDEP + LD+ +W+ + +P V ++HD
Sbjct: 152 QPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQ 196
|
Length = 213 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 5e-08
Identities = 56/231 (24%), Positives = 98/231 (42%), Gaps = 51/231 (22%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ +++S SY V VLK +T+ + GE V LVG +G+GK+T ++ +P G V
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV 538
Query: 155 ---------IKAKS-NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ ++A + QE V S +VRE IA L
Sbjct: 539 LLDGVPLVQYDHHYLHRQVALVGQE-PVLFSGSVRE----------NIAYGLTDTPDEEI 587
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
A A+A N + P G+ + G++ S SG
Sbjct: 588 MAA-------------------AKAANAHDFIME----FPN-GYDTEVGEK--GSQLSGG 621
Query: 265 Q-MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
Q R+++ + L++ P +L+LDE T+ LD + + L+ + +++I+H
Sbjct: 622 QKQRIAIARALVRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAH 672
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 6e-08
Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496
N++I GE ++GP+G GKSTLLKLI E P G + + +V +P Y +
Sbjct: 21 NISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIP-YLRRK 79
Query: 497 -----QAEALDLDKTVLETVAEAAE 516
Q L D+ V E VA A E
Sbjct: 80 IGVVFQDFRLLPDRNVYENVAFALE 104
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 6e-08
Identities = 22/57 (38%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 100 LENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+EN+S Y G VL++V++ ++ GE + ++G +G+GK+T R+I G P SG V
Sbjct: 3 VENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 5/70 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MG--LEKPR-G 478
+ I+NL Y ++ NL I + + TA+IGP+GCGKSTLL+ + M + R
Sbjct: 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIE 60
Query: 479 GEVLLGEHNV 488
G+VL ++
Sbjct: 61 GKVLFDGQDI 70
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 60/240 (25%), Positives = 101/240 (42%), Gaps = 75/240 (31%)
Query: 102 NISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
++ SY G LK + ++ +KGE V L+G NGAGK+T G +P SG V
Sbjct: 6 DLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEP 65
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAF--------KEEMEIAGKLER 198
++ + + I F + + ++ + TV E+ AF KEE+E +R
Sbjct: 66 IKYDKKSLLEVRKTVGIVFQNPDDQL-FAPTVEEDV--AFGPLNLGLSKEEVE-----KR 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
V++AL +AV ++ + K
Sbjct: 118 VKEAL------------------------KAVGMEGFENKPPH----------------- 136
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ IL P++++LDEPT+ LD I L L K+ + ++I +HD
Sbjct: 137 HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHD 196
|
Length = 275 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-08
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ I N+ + + NL + G A++GP+G GKSTLL++I GLE+P G + L
Sbjct: 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRL 59
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 50/228 (21%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK--------- 162
+LK +++ ++ GE +G++G +G+GK+T R++ G P SG+V ++++
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 163 -IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
I +L Q+ E+ T+ E ++ F EE + +K +E+A RL +
Sbjct: 411 HIGYLPQDVEL-FDGTIAEN-IARFGEEAD-------PEKVIEAA--------RLAGVHE 453
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281
L+ R Q DT + G A+ S G + R++L + L DP L+
Sbjct: 454 LILRLPQG--YDTR-------------IGEGG----ATLSGGQRQRIALARALYGDPFLV 494
Query: 282 LLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326
+LDEP ++LD + L + + +V+I+H R KI
Sbjct: 495 VLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH-RPSALASVDKI 541
|
Length = 580 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 7e-08
Identities = 57/229 (24%), Positives = 103/229 (44%), Gaps = 50/229 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-------- 162
L+ +++ ++ GE + ++G +G+GK+T R+I G P SG+V +++K
Sbjct: 332 PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391
Query: 163 --IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220
I +L Q+ E+ TV E ++ F E + +K +E+A +L
Sbjct: 392 KHIGYLPQDVEL-FPGTVAEN-IARFGENAD-------PEKIIEAA--------KLAGVH 434
Query: 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+L+ R G+ G A+ S G + R++L + L DP L
Sbjct: 435 ELILRLPD------------------GYDTVIGPG-GATLSGGQRQRIALARALYGDPKL 475
Query: 281 LLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFLDQLCTKI 326
++LDEP ++LD + + L L + + +V+I+H R L KI
Sbjct: 476 VVLDEPNSNLDEEGEQALANAIKALKARGITVVVITH-RPSLLGCVDKI 523
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 8e-08
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+L I +G+ I+G NGCGKSTL KL GL P+ GE+LL
Sbjct: 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILL 401
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 8e-08
Identities = 54/206 (26%), Positives = 88/206 (42%), Gaps = 39/206 (18%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+ L N +K++ T L ++ E+ +G+ V ++G NGAGK+T L IAG +P SG
Sbjct: 2 ISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSG 61
Query: 153 NV------IKAKSNMKIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + KS K A L++ F+ ++ T E ++ E + +A + ++ L S
Sbjct: 62 QILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPE--LTIE-ENLALA-ESRGKKRGLSS 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A L R F + + L ++ L S G +
Sbjct: 118 A-----LNERRRSSFRERLARLGLGLENRLSDRIGLL------------------SGGQR 154
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD 291
+SL L P +LLLDE T LD
Sbjct: 155 QALSLLMATLHPPKILLLDEHTAALD 180
|
Length = 263 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 19/37 (51%), Positives = 28/37 (75%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
L+++ GE A++G +GCGKSTL +L++GLE P G V
Sbjct: 33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNV 69
|
Length = 268 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 9e-08
Identities = 24/57 (42%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 429 NLEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
L E RL + + E T I G +G GKSTLL+ I GLEKP GG ++L
Sbjct: 1 MLCVDIEKRLPDFTLKIDFDLNEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLN 57
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 9e-08
Identities = 24/63 (38%), Positives = 40/63 (63%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + +KNL + + + + +L ++ GE AIIGP+G GK+TLL+ I LE+P G +
Sbjct: 2 SAIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIR 61
Query: 483 LGE 485
+G+
Sbjct: 62 VGD 64
|
Length = 250 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 9e-08
Identities = 24/40 (60%), Positives = 31/40 (77%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
NLTI++GE ++IG +GCGKSTLL LI GL +P G V+L
Sbjct: 5 NLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVIL 44
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 9e-08
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 3/65 (4%)
Query: 422 RSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
++ +++ F Y D + T+ GE A++GP+G GKST+ L+ L +P G
Sbjct: 476 EGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTG 535
Query: 479 GEVLL 483
G+VLL
Sbjct: 536 GQVLL 540
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 18/90 (20%)
Query: 397 EEEQIEKPFQRKQMKIRFPERGRSG-----RSVVTIKNLEFGYEDRLLFNRANLTIERGE 451
E + K ++ + +S R V +K + + TIE+GE
Sbjct: 2 EVSNLSKSYRVYSKEPGLIGSLKSLFKRKYREVEALKGI-------------SFTIEKGE 48
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
IGPNG GK+T LK++ GL +P GEV
Sbjct: 49 IVGFIGPNGAGKTTTLKILSGLLQPTSGEV 78
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
NL I GE AIIGP+G GKSTLL+ I L +P G +LL
Sbjct: 21 INLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (130), Expect = 1e-07
Identities = 19/39 (48%), Positives = 25/39 (64%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+L I GE +IG +G GKSTL++ I LE+P G VL
Sbjct: 25 SLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVL 63
|
Length = 343 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 25/66 (37%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 424 VVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+V +N+ F Y D L+ + T+ GE TA++GP+G GKST++ L+ +P+GG+
Sbjct: 11 IVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ 70
Query: 481 VLLGEH 486
VLL
Sbjct: 71 VLLDGK 76
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
G D + +L+I +GE AI+G +G GKSTLL L+ GL+ P GEVL
Sbjct: 14 GKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 1e-07
Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 64/227 (28%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------------- 155
G VLK + + ++GE + L+G NGAGK+T L + G P SG V+
Sbjct: 4 GPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGL 63
Query: 156 -KAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + + + F Q F + + V ++ E E+ RV++AL AV
Sbjct: 64 LERRQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVE---RRVREALT-AVGASG 119
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
L R ++K R+++
Sbjct: 120 LRERPTHCLSGGEKK----------------------------------------RVAIA 139
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
+ PD+LLLDEPT LD E + L + + + +VI +HD
Sbjct: 140 GAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 1e-07
Identities = 25/72 (34%), Positives = 39/72 (54%), Gaps = 5/72 (6%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR---GGE 480
++ +KN+ L N TI +GE ++GP+GCGKSTLL ++G + GE
Sbjct: 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGE 61
Query: 481 VLLGEH--NVLP 490
+ L E ++LP
Sbjct: 62 LWLNEQRLDMLP 73
|
Length = 213 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 37/111 (33%), Positives = 53/111 (47%), Gaps = 14/111 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVL 482
VT+K+ +LL + + GE TAI+GP+G GKSTLL + G G GEVL
Sbjct: 11 VTVKSSPSKSGKQLL-KNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVL 69
Query: 483 LGEHNVLPNYFEQ-----NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLG 528
+ + F + Q + L TV ET+ AA+ ++GL G
Sbjct: 70 INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAK------LRGLSG 114
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 1e-07
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ +N+SK + VL ++ + +GE V ++G +G+GK+T LR I EE SG++I
Sbjct: 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
|
Length = 240 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 59/241 (24%), Positives = 96/241 (39%), Gaps = 63/241 (26%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK--- 162
VL D+ E+ GE V L G +G+GKTT L +I G G++ + S +
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 163 ----IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I ++ Q + T R+ VQ ALE L
Sbjct: 80 LRRNIGYIFQAHNLLGFLTARQN-----------------VQMALE-----------LQP 111
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
+ + +A ++ +G GD L + S G + R+++ + L+
Sbjct: 112 NLSYQEARERA----------RAMLEAVGL----GDHLDYYPHNLSGGQKQRVAIARALV 157
Query: 276 QDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331
P L+L DEPT LD D +E ++ +Q ++I++HD LD + +IV E
Sbjct: 158 HRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILD-VADRIVHMED 216
Query: 332 G 332
G
Sbjct: 217 G 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 28/57 (49%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 428 KNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+N+ F Y+D NLTI+RGE +IG NG GKSTL L+ GL +P+ GE+LL
Sbjct: 326 RNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382
|
Length = 547 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 56/226 (24%), Positives = 109/226 (48%), Gaps = 36/226 (15%)
Query: 95 SSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S V+L NI+ Y + ++++ + ++ G++V LVG +G+GK+T +++AG +P SG
Sbjct: 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQK---ALESAV-D 208
I F E + R V +A + V + E V D
Sbjct: 535 E---------ILFDGIPRE-EIPREV-------------LANSVAMVDQDIFLFEGTVRD 571
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
++ L + + DL++ A D + ++ EL A+ G A+ S G + R+
Sbjct: 572 NLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAEL---AEGG----ANLSGGQRQRL 624
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314
+ + L+++P +L+LDE T+ LD +T + ++ L ++ +I++H
Sbjct: 625 EIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAH 670
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 22/58 (37%), Positives = 40/58 (68%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++ N++KS+ G + DV+ + KGE L+G +G GK+T LR++AG E+P +G ++
Sbjct: 20 LEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
|
Length = 377 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 2e-07
Identities = 23/62 (37%), Positives = 43/62 (69%), Gaps = 2/62 (3%)
Query: 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
S ++++ ++ Y+ G +L DV+ +++ GE V +VG +G+GK+T LR++ G E P+SG
Sbjct: 449 SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG 508
Query: 153 NV 154
+V
Sbjct: 509 SV 510
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 51.3 bits (123), Expect = 2e-07
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 50/202 (24%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+L+ I SY + D+T +GE +VG +G+GK+T L +IAG E P SG V+
Sbjct: 1 VRLDKIRFSYGEQPMHFDLT--FAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLIN 58
Query: 158 KSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
++ ++ L QE + TV + +++ ++A+E A+
Sbjct: 59 GVDVTAAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLT---AEDRQAIEVALAR 115
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ L G RL S G + R++
Sbjct: 116 VGLAGLEK-------------------------------------RLPGELSGGERQRVA 138
Query: 270 LGKILLQDPDLLLLDEPTNHLD 291
L ++L++D +LLLDEP LD
Sbjct: 139 LARVLVRDKPVLLLDEPFAALD 160
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 43/149 (28%), Positives = 62/149 (41%), Gaps = 33/149 (22%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
++N+ F R L + +LT G+ T +IG NG GKSTLLK++ + P GE+LL
Sbjct: 13 ALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDA 72
Query: 486 HNVLP----------NYFEQN--QAEALDLDKTVLETVAEAAEDW-------------RI 520
+ Y Q AE + TV E VA W ++
Sbjct: 73 QPLESWSSKAFARKVAYLPQQLPAAEGM----TVRELVAIGRYPWHGALGRFGAADREKV 128
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ L+G R V LSGGE+
Sbjct: 129 EEAISLVGLKPLA----HRLVDSLSGGER 153
|
Length = 265 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 42/191 (21%), Positives = 70/191 (36%), Gaps = 44/191 (23%)
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RL 438
A R + + LE Q + + + + R + + +T++NL D +
Sbjct: 354 ATLLRLAEFRQALEAAQMDTE-----KPARTGRRI-DFDDNADHGITLENLSLRTPDGQT 407
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGEHNVLP 490
L + N + GE+ I G +G GK++LL+ + GL P +L LP
Sbjct: 408 LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPADSALLF-----LP 462
Query: 491 N--YFEQ----------NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD 538
Y Q N A D ++ + + LG + D D
Sbjct: 463 QRPYLPQGTLREALCYPNAAPDFS-DAELVAVLHKVG-----------LGDLAERLDEED 510
Query: 539 RKVSLLSGGEK 549
R +LSGGE+
Sbjct: 511 RWDRVLSGGEQ 521
|
Length = 604 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 11/89 (12%)
Query: 104 SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSG-------NV 154
SKS K +LK+V+ + K GE ++G +GAGK+T L +AG+ SG +
Sbjct: 18 SKSGK--QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPL 75
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
K I ++ Q+ + + TVRE M
Sbjct: 76 DKRSFRKIIGYVPQDDILHPTLTVRETLM 104
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ K Y GV L VK+GE +G+VG NG GKTT ++I+AGQ P+ N
Sbjct: 1 QLYPDCVKRY-GVFFLLVELGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 2e-07
Identities = 53/216 (24%), Positives = 91/216 (42%), Gaps = 70/216 (32%)
Query: 100 LENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L++I +SY V VLK ++ ++ GE V +VG +G+GK+T + I+ ++P SG
Sbjct: 7 LKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYR 66
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-----------EEMEI------AGKLER 198
A + +A L + ++++ RE F F+ + +E+ + +R
Sbjct: 67 VAGQD--VATLDAD---ALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQR 121
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL-- 256
+ +A E LLQR LG DR+
Sbjct: 122 LLRAQE-----------------LLQR--------------------LGL----EDRVEY 140
Query: 257 -VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ S G Q R+S+ + L+ ++L DEPT LD
Sbjct: 141 QPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
|
Length = 648 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 2e-07
Identities = 42/151 (27%), Positives = 66/151 (43%), Gaps = 25/151 (16%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEV 481
+++IK+L ED+ + NL + GE AI+GPNG GKSTL + G E + GG V
Sbjct: 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTV 60
Query: 482 LLGEHNVLPNYFEQNQAEALDL------------DKTVLETVAEAAEDWR---------- 519
++L E E + + ++ L+T A +R
Sbjct: 61 EFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDF 120
Query: 520 IDDIKGLLGRCNFKADMLDRKVSL-LSGGEK 549
D ++ + D+L R V++ SGGEK
Sbjct: 121 QDLMEEKIALLKMPEDLLTRSVNVGFSGGEK 151
|
Length = 248 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 3e-07
Identities = 25/71 (35%), Positives = 39/71 (54%), Gaps = 4/71 (5%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316
S G Q R++L + L DPD+LLLDEPT+ LD T + L + +V+++HD
Sbjct: 102 SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL 161
Query: 317 AFLDQLCTKIV 327
+L ++V
Sbjct: 162 DEAARLADRVV 172
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 51.9 bits (124), Expect = 3e-07
Identities = 46/151 (30%), Positives = 73/151 (48%), Gaps = 30/151 (19%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LL 483
+ + + Y D+++ N + TI RGE ++GPNG GKST+ ++++G+ P G++ +L
Sbjct: 5 IDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVL 64
Query: 484 GEH------------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKG 525
GE V+P Q + LD + TV E + + + I
Sbjct: 65 GEPVPSRARLARVAIGVVP------QFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPS 118
Query: 526 LL--GRCNFKADMLDRKVSLLSGGEKVNQTL 554
LL R KAD+ +V+LLSGG K TL
Sbjct: 119 LLEFARLESKADV---RVALLSGGMKRRLTL 146
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 3e-07
Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +N+ Y + N NL I +GE +IGP+G GK+T +K+I L +P GE+ +
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 484 GEHNV 488
++
Sbjct: 61 DGEDI 65
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 25/68 (36%), Positives = 39/68 (57%), Gaps = 9/68 (13%)
Query: 423 SVVTIKNLEFGYEDRLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
S++ ++++ Y LF +L+IE GE ++G +GCGKSTL +L++GL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 474 EKPRGGEV 481
EKP G V
Sbjct: 61 EKPAQGTV 68
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 53.1 bits (127), Expect = 3e-07
Identities = 42/119 (35%), Positives = 58/119 (48%), Gaps = 5/119 (4%)
Query: 376 LGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGR-SVVTIKNLEFGY 434
LG S R A +K E L EE +E P + + F ER G V +KNL +
Sbjct: 881 LGGEGCSTREERALEKTEPLTEE--MEDPEHPEGINDSFFERELPGLVPGVCVKNLVKIF 938
Query: 435 E--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491
E R +R N+T + TA +G NG GK+T L ++ GL P G VL+G ++ N
Sbjct: 939 EPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN 997
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 3e-07
Identities = 24/61 (39%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++L++ Y D N E+GE A++GPNG GKSTL G+ KP GEVL
Sbjct: 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVL 60
Query: 483 L 483
+
Sbjct: 61 I 61
|
Length = 275 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 3e-07
Identities = 27/72 (37%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPR 477
+ ++NL F Y NL I + + TA IGP+GCGKSTLL+ L
Sbjct: 14 IQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAE- 72
Query: 478 GGEVLLGEHNVL 489
GE+LL N+L
Sbjct: 73 -GEILLDGENIL 83
|
Length = 260 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 43/138 (31%), Positives = 68/138 (49%), Gaps = 18/138 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++++ L+F E + LF+ ++T T I G NGCGKS+LL++I G+ +P G +
Sbjct: 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYY 59
Query: 484 GEHNVLPN--------YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCN-FK- 533
N N Y N L L+ TV E + +E + + + L + FK
Sbjct: 60 --KNCNINNIAKPYCTYIGHNL--GLKLEMTVFENLKFWSEIY--NSAETLYAAIHYFKL 113
Query: 534 ADMLDRKV-SLLSGGEKV 550
D+LD K SL SG +K+
Sbjct: 114 HDLLDEKCYSLSSGMQKI 131
|
Length = 195 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 22/66 (33%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
RL S G + R+++G+ LL P LLL+DEP LD + + +LE + +P+
Sbjct: 126 GRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPI 185
Query: 310 VIISHD 315
+ +SH
Sbjct: 186 LYVSHS 191
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++K Y +DV++++ GE +G+VG +G+GKTT L ++ + PD+G V
Sbjct: 10 RGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 25/62 (40%), Positives = 39/62 (62%), Gaps = 7/62 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +++L F Y+D +A +L+I G KTA++GPNG GKSTLL + G+ P+ G
Sbjct: 4 IIEVEDLHFRYKDG---TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG 60
Query: 480 EV 481
V
Sbjct: 61 RV 62
|
Length = 274 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 60/229 (26%), Positives = 100/229 (43%), Gaps = 65/229 (28%)
Query: 109 GVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158
G+ V + D + +V++GE ++G++G+GK+T +R++ EP G + + A
Sbjct: 39 GLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAA 98
Query: 159 S-----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
KI+ + Q F + RTV E AF E++ K ER ++ALE+ ++L+
Sbjct: 99 ELRELRRKKISMVFQSFALLPHRTVLEN--VAFGLEVQGVPKAEREERALEA----LELV 152
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
G L+ + D+ S G Q R+ L +
Sbjct: 153 G--LEGYA--------------------------------DKYPNELSGGMQQRVGLARA 178
Query: 274 LLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
L DPD+LL+DE + LD D + L+ L K +V I+HD
Sbjct: 179 LANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKT---IVFITHD 224
|
Length = 386 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 4e-07
Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 422 RSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ ++++ F Y D + ++ GE AI+G NG GKSTL KL+ GL P G
Sbjct: 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62
Query: 480 EVLLG 484
+ +G
Sbjct: 63 TITVG 67
|
Length = 279 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 11/81 (13%)
Query: 100 LENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ N+S SY VLK+++ E+K+GEK+ L+G +G+GK+T L+++ G +P G +
Sbjct: 3 INNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLD 62
Query: 158 KSNM---------KIAFLSQE 169
+ I+ L+Q
Sbjct: 63 GVPVSDLEKALSSLISVLNQR 83
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 5e-07
Identities = 50/255 (19%), Positives = 108/255 (42%), Gaps = 27/255 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR----IIAGQEEPDSGN 153
+++E ++K++ L V + GE V L+G +G+GK+T LR +I G + S
Sbjct: 5 IRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHI 64
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ ++ + L+++ S + T ++ + +L ++ L A+
Sbjct: 65 ELLGRTVQREGRLARDIRKSRANT------GYIFQQFNLVNRLSVLENVLIGALGSTPFW 118
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
F Q++ + + + +G + V++ S G Q R+++ +
Sbjct: 119 RTCFSWFTREQKQ-----------RALQALTRVGM-VHFAHQRVSTLSGGQQQRVAIARA 166
Query: 274 LLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+Q ++L DEP LD ++ ++ L + +V+ H + + C +IV
Sbjct: 167 LMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVAL 226
Query: 330 EMGVSRTYEGNYSQY 344
G Y+G+ Q+
Sbjct: 227 RQG-HVFYDGSSQQF 240
|
Length = 262 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 5e-07
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 36/203 (17%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-IK 156
++ + +S S G +LKD++ + + G +VG +GAGK+T +++I +P G++ I
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILID 63
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
I + ++ M F K+ +E G + + +K
Sbjct: 64 GVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEY-GPMLKGEK--------------- 107
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ V + +G + R V + S G R+S+ + L
Sbjct: 108 -------------------NVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLAN 148
Query: 277 DPDLLLLDEPTNHLDLDTIEWLE 299
+P++LLLDEPT+ LD + E +E
Sbjct: 149 NPEVLLLDEPTSALDPTSTEIIE 171
|
Length = 241 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 5e-07
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + +SK Y +DV++++ GE +G+VG +G+GKTT L+ I+G+ PD+G V
Sbjct: 7 LSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT 64
|
Length = 258 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.9 bits (121), Expect = 6e-07
Identities = 45/199 (22%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 98 VKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K E ++ +Y+ L D+ EVKKG L+G G+GK+T L+ + G +P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL 212
V ++ +S T +++ + ++++ + + Q E+ + D+
Sbjct: 62 KV-------------TVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAF 108
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
+ F + + KA+ + + L+ +G + ++ S G R+++
Sbjct: 109 GPQ---NFGIPKEKAEKIAAEKLEM--------VGLADEFWEKSPFELSGGQMRRVAIAG 157
Query: 273 ILLQDPDLLLLDEPTNHLD 291
IL +P++L+LDEPT LD
Sbjct: 158 ILAMEPEVLVLDEPTAGLD 176
|
Length = 288 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L + D + + +L++ G ++GPNG GK+TLL+ I G P G VL+
Sbjct: 4 IDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVA 63
|
Length = 402 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 37/225 (16%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +N+S Y+ LKDV++ + KG+ +VG NG+GK+T +++ G E+ SG
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG--- 64
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMG 214
+I + +Q +R+ F+ + + G + + A
Sbjct: 65 ------EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVA------------ 106
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
F L + AV D + +VS+ + ++ + D + S G + R+++ +L
Sbjct: 107 -----FGL---ENHAVPYDEMHRRVSEALKQVDML-ERADYEPNALSGGQKQRVAIAGVL 157
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
+P +++LDE T+ LD D + L + K ++ ++ I+HD
Sbjct: 158 ALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHD 202
|
Length = 269 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKS 464
R PE R +T +N+ F Y + + + NL I+ GE I+GP+G GKS
Sbjct: 442 RSAGLAALPEL----RGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKS 497
Query: 465 TLLKLIMGLEKPRGGEVLLGEHNV 488
TL KL+ L P+ G+VL+ ++
Sbjct: 498 TLTKLLQRLYTPQHGQVLVDGVDL 521
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 7e-07
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++ L + Y D N+ I++GE TAI+G NG GKSTL + + G+ KP G +L
Sbjct: 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRIL 64
Query: 483 LG 484
Sbjct: 65 FD 66
|
Length = 283 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
L DV++ VK+GE + ++G NG+GK+T +R+I G E +SG +I
Sbjct: 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQII 65
|
Length = 279 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 8e-07
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 20/122 (16%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN-----YFEQNQAE 499
L+ ++GE ++GPNG GK+TLL+ I+GL P G V + + Y Q
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEF 60
Query: 500 ALDLDKTVLETVAEA------------AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
A D +V TV D+ ++ L R ++ DR V LSGG
Sbjct: 61 AWDFPISVAHTVMSGRTGHIGWLRRPCVADFAA--VRDALRRVGL-TELADRPVGELSGG 117
Query: 548 EK 549
++
Sbjct: 118 QR 119
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 8e-07
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L N NL + E ++IGPNG GK+T+ + G KP GG +LL ++
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHI 69
|
Length = 255 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 8e-07
Identities = 50/209 (23%), Positives = 91/209 (43%), Gaps = 53/209 (25%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ N++ Y G L ++ ++ GE V LVG +G+GK+T + +I EPDSG ++
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 156 K----------AKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
A ++A +SQ+ F +++ + E A + +++A
Sbjct: 391 LDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA-------YGRTEQADR-AEIERA 442
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L +A D + +L D +G ++G L S
Sbjct: 443 LAAA-YAQDFVDKLPLGLDT----------------------PIG---ENGVLL----SG 472
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R+++ + LL+D +L+LDE T+ LD
Sbjct: 473 GQRQRLAIARALLKDAPILILDEATSALD 501
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 9e-07
Identities = 36/134 (26%), Positives = 58/134 (43%), Gaps = 23/134 (17%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG---GEVLLGEHNVLPNY 492
+ N +L +E G+ AI+G +G GK+TLL I G + G G++L P+
Sbjct: 19 YARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQ 78
Query: 493 FEQNQAEALDLDK-----TVLETV------------AEAAEDWRIDDIKGLLGRCNFKAD 535
F++ A D TV ET+ ++A R++D+ LL
Sbjct: 79 FQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDLALT-R 135
Query: 536 MLDRKVSLLSGGEK 549
+ V +SGGE+
Sbjct: 136 IGGNLVKGISGGER 149
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 9e-07
Identities = 60/237 (25%), Positives = 106/237 (44%), Gaps = 53/237 (22%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
++ +N+S +Y+ T + DV E ++G+ +VG G+GK+T ++ I +P +G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 153 NV----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERVQKALESAV 207
V I K ++ R VR+ F+ E ++ E V
Sbjct: 63 TVTVDDITITHKTKDKYI---------RPVRKRIGMVFQFPESQL----------FEDTV 103
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS----SG 263
+ + G K +NLD + +L+ +LGF+ D V S S SG
Sbjct: 104 EREIIFGP----------KNFKMNLDEVKNYAHRLLMDLGFSRD-----VMSQSPFQMSG 148
Query: 264 WQMR-MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
QMR +++ IL +PD+++LDEPT LD + L+ ++ ++++SHD
Sbjct: 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHD 205
|
Length = 286 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-06
Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 22/128 (17%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQ------- 497
T++ GE T ++GPNG GK+T L+++ GL +P G + +V+ E +
Sbjct: 26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLGFVSD 85
Query: 498 AEALDLDKTVLETVA----------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ L T E + + R++++ LG ++LDR+V S G
Sbjct: 86 STGLYDRLTARENLEYFAGLYGLKGDELTA-RLEELADRLG----MEELLDRRVGGFSTG 140
Query: 548 EKVNQTLV 555
+ +
Sbjct: 141 MRQKVAIA 148
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 17/38 (44%), Positives = 28/38 (73%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++E+GE ++GPNG GK+T +++I+G+ P GEVL
Sbjct: 21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVL 58
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 45/142 (31%), Positives = 66/142 (46%), Gaps = 30/142 (21%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGEH------ 486
Y D+ + N + T+ GE ++GPNG GKST+ ++I+G+ P G++ +LG
Sbjct: 51 YGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARAR 110
Query: 487 ------NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IKGLL--GRCNF 532
V+P Q + LDL+ TV E + + + I LL R
Sbjct: 111 LARARIGVVP------QFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLES 164
Query: 533 KADMLDRKVSLLSGGEKVNQTL 554
KAD +VS LSGG K TL
Sbjct: 165 KADA---RVSDLSGGMKRRLTL 183
|
Length = 340 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-06
Identities = 55/224 (24%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161
+ +++ V +G+ ++G +G GKTT LR+I GQ PD G ++ N+
Sbjct: 22 IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYT 81
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ L Q + V + +E ++ L L S V +M
Sbjct: 82 VRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPL------LHSTV----MM----- 126
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
K +AV L +KLMP + S G R +L + + +P
Sbjct: 127 -------KLEAVGL----RGAAKLMP-------------SELSGGMARRAALARAIALEP 162
Query: 279 DLLLLDEPTNHLDLDT-------IEWLEGYLGKQDVPMVIISHD 315
DL++ DEP D T I L LG V V++SHD
Sbjct: 163 DLIMFDEPFVGQDPITMGVLVKLISELNSALG---VTCVVVSHD 203
|
Length = 269 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 40/132 (30%), Positives = 54/132 (40%), Gaps = 38/132 (28%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP--------------- 490
T G+ I+GPNG GKST LK++ G KP LG + P
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKILAGELKPN-----LGRYEDPPSWDEVIKRFRGTELQ 150
Query: 491 NYFEQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
NYF++ L + V E + + E + D++ LG N +
Sbjct: 151 NYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLEN----V 206
Query: 537 LDRKVSLLSGGE 548
LDR VS LSGGE
Sbjct: 207 LDRDVSELSGGE 218
|
Length = 591 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
NLT+E GE ++GP+GCGK+TLL LI G + G + L V
Sbjct: 21 NLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPV 65
|
Length = 255 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 1e-06
Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 36/206 (17%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA 157
++++ S + +L+ + EV+ GE ++G NG+GK+T +AG+E E G V
Sbjct: 4 IKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER--VQKALESAVDDMDLMGR 215
++ E+S E AF+ +EI G + +Q AL +
Sbjct: 64 GKDL--------LELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQ--E 113
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKL-MPELGFTADDGDRLVAS----FSSGWQMRMSL 270
LD FD D ++ K++ L MPE D L S FS G + R +
Sbjct: 114 PLDRFDF---------QDLMEEKIALLKMPE--------DLLTRSVNVGFSGGEKKRNDI 156
Query: 271 GKILLQDPDLLLLDEPTNHLDLDTIE 296
++ + +P+L +LDE + LD+D ++
Sbjct: 157 LQMAVLEPELCILDESDSGLDIDALK 182
|
Length = 248 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
A+ T+ TAI G +G GK+TL++LI GL +P GE++L
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL 56
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
N A+L +E GE I+G +G GKSTL++L+ L +P GE+L+ ++
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK 94
|
Length = 386 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 1e-06
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+ T+ G+ AIIG NG GKSTL K++ G+ +P GE+L+ +H
Sbjct: 31 PVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75
|
Length = 267 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 60/236 (25%), Positives = 109/236 (46%), Gaps = 32/236 (13%)
Query: 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K++NI K + + L +V+ E+ +GE + ++G G+GKTT + + PD+G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERV-QKA----LESA 206
+ + K ++E E + + +++ K+ EI ++ V Q A E
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 207 VDDMDLMGRL---LDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSS 262
++ + G + + + + +R A+ + L LD + P EL S
Sbjct: 123 IEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFEL--------------SG 168
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLE--GYLGKQDVPMVIISHD 315
G + R++L IL +PD L+ DEPT LD E LE L KQ +++++HD
Sbjct: 169 GQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHD 224
|
Length = 305 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 1e-06
Identities = 61/238 (25%), Positives = 100/238 (42%), Gaps = 65/238 (27%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------QEEPD 150
+++NI+K++ GV L +V+ +V+ GE V L G NGAGK+T +++++G E
Sbjct: 7 EMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIF 66
Query: 151 SGNVIKAKSNMK------IAFLSQEFEVSMSRTVREE-FMSAFKEEMEIAGKLERVQKAL 203
G ++A N++ IA + QE + +V E F+ E+ G
Sbjct: 67 EGEELQAS-NIRDTERAGIAIIHQELALVKELSVLENIFLG---NEITPGGI-------- 114
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
MD +D + +AQ KL+ +L + V + G
Sbjct: 115 ------MD--------YDAMYLRAQ------------KLLAQLKLDINPATP-VGNLGLG 147
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISH 314
Q + + K L + LL+LDEPT L LD I L+ + + ISH
Sbjct: 148 QQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLK----AHGIACIYISH 201
|
Length = 506 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 1e-06
Identities = 27/67 (40%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 425 VTIKNLEFGY------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
+ ++N+ + Y E R LF+ NLTIE G TA IG G GKST+++L+ GL P
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFD-VNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 479 GEVLLGE 485
G V + +
Sbjct: 62 GSVRVDD 68
|
Length = 280 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 2e-06
Identities = 48/158 (30%), Positives = 71/158 (44%), Gaps = 40/158 (25%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV- 481
+ + +N+E Y D+L+ + + ++RGE ++GPNG GK+T L++++GL P G +
Sbjct: 6 APIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSIS 65
Query: 482 LLGEH------------NVLPNYFEQNQAEALDLDKTVLE-----------TVAEAAEDW 518
L GE V+P Q + LD D TV E + A A
Sbjct: 66 LCGEPVPSRARHARQRVGVVP------QFDNLDPDFTVRENLLVFGRYFGLSAAAARA-- 117
Query: 519 RIDDIKGLL--GRCNFKADMLDRKVSLLSGGEKVNQTL 554
+ LL + KAD KV LSGG K TL
Sbjct: 118 ---LVPPLLEFAKLENKADA---KVGELSGGMKRRLTL 149
|
Length = 306 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ I +GE +G NG GKST LK++ GL P G+V +
Sbjct: 44 SFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVN 84
|
Length = 325 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 38/212 (17%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
++DV++++ KGE +G+ G+ GA +T + + G E +G + +
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKIN---------- 313
Query: 173 SMSRTVREEFMSAF---KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRK--- 226
+ E F EE G + S + ++ ++ LL
Sbjct: 314 --NHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIR---NYKNKVGLLDNSRMK 368
Query: 227 --AQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
Q V +D++ K ++G S S G Q ++ +G+ LL P++L+LD
Sbjct: 369 SDTQWV-IDSMRVKTPGHRTQIG-----------SLSGGNQQKVIIGRWLLTQPEILMLD 416
Query: 285 EPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
EPT +D+ I L L K+D ++IIS
Sbjct: 417 EPTRGIDVGAKFEIYQLIAELAKKDKGIIIIS 448
|
Length = 491 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 22/58 (37%), Positives = 40/58 (68%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN++ +Y G VLKDV++ + G+KV +VG +G+GK+T LR++ + SG++
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 52/209 (24%), Positives = 86/209 (41%), Gaps = 64/209 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+KL +I+ Y + + D+T V++GE+V ++G +GAGK+T L +IAG P SG++
Sbjct: 2 LKLTDITWLYHHLPMRFDLT--VERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLN 59
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKE---------EMEIA-G-----KLERVQKA 202
+ S+ VSM F+E I G KL Q+
Sbjct: 60 GQDHTTTPPSRR-PVSM----------LFQENNLFSHLTVAQNIGLGLNPGLKLNAAQR- 107
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
+ L A+ + ++ L RL S
Sbjct: 108 ------------------EKLHAIARQMGIEDL-----------------LARLPGQLSG 132
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G + R++L + L+++ +LLLDEP + LD
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 39/119 (32%), Positives = 57/119 (47%), Gaps = 22/119 (18%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQ----NQA 498
GE + G +G GKSTLLKLI G+E+P G++ H++ +P Q Q
Sbjct: 28 GEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQD 87
Query: 499 EALDLDKTVLETVA-----EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL---LSGGEK 549
L +D+TV + VA A DDI+ + K +LD+ + LSGGE+
Sbjct: 88 HHLLMDRTVYDNVAIPLIIAGASG---DDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQ 143
|
Length = 222 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 2e-06
Identities = 63/221 (28%), Positives = 89/221 (40%), Gaps = 64/221 (28%)
Query: 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKI----------AF 165
++ EV+ GE + LVG NGAGK+T L +AG P SG++ A ++ A+
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGL-LPGSGSIQFAGQPLEAWSAAELARHRAY 73
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
LSQ+ F M + L Q + +
Sbjct: 74 LSQQ--------QTPPFA------MPVFQYLTLHQPDKTRTEAVASALNEV--------- 110
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQMRMSLGKILLQ-DPD---- 279
A+A+ LD KL R V S G WQ R+ L ++LQ PD
Sbjct: 111 -AEALGLD------DKL-----------GRSVNQLSGGEWQ-RVRLAAVVLQVWPDINPA 151
Query: 280 --LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315
LLLLDEP N LD+ L+ L + Q + +V+ SHD
Sbjct: 152 GQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHD 192
|
Length = 248 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 58/252 (23%), Positives = 98/252 (38%), Gaps = 87/252 (34%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ Y LK++ ++ K + L+G +G GK+T LR + + G I+
Sbjct: 2 IEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG 61
Query: 158 KSNMKIAFLSQEF------EVSMSRTVREEF-------MSAF--------------KEEM 190
K+ F Q+ V + R V F MS + K+E+
Sbjct: 62 ----KVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKEL 117
Query: 191 EIAGKLERVQKALESAVDDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFT 249
+ E V+++L+ A L DE D L A
Sbjct: 118 D-----EIVEESLKKAA--------LWDEVKDRLHDSAL--------------------- 143
Query: 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYL 302
S G Q R+ + + L +P++LLLDEPT+ LD + I+ L
Sbjct: 144 ---------GLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL---- 190
Query: 303 GKQDVPMVIISH 314
K+ +VI++H
Sbjct: 191 -KKKYTIVIVTH 201
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 2e-06
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ + + + ++ GE IIGP+G GKSTL +L++G+ P G V L
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRL 395
|
Length = 580 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ KN+ + + + +L I++GE IIGP+G GKSTLL+ I LE+ G++++
Sbjct: 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIV 60
Query: 484 GEHNVL 489
V
Sbjct: 61 DGLKVN 66
|
Length = 240 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 45/153 (29%), Positives = 74/153 (48%), Gaps = 35/153 (22%)
Query: 423 SVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+++ +KNL F Y +++ N + +++GE +IIG NG GKST ++LI GL + G
Sbjct: 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG 62
Query: 480 EV-----LLGEHNVLP-------------NYF-----EQNQAEALDLDKTVLETVAEAAE 516
++ LL E NV N F E + A L+ E + E
Sbjct: 63 QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKE--- 119
Query: 517 DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
R+++ L+G +FK +R+ + LSGG+K
Sbjct: 120 --RVNEALELVGMQDFK----EREPARLSGGQK 146
|
Length = 279 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 19/47 (40%), Positives = 30/47 (63%), Gaps = 2/47 (4%)
Query: 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ ++NL Y + + LF+ ++ I + TA IGP+GCGKSTLL+
Sbjct: 26 LEVRNLNLFYGDKQALFD-ISMRIPKNRVTAFIGPSGCGKSTLLRCF 71
|
Length = 272 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.4 bits (118), Expect = 2e-06
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 29/115 (25%)
Query: 455 IIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE--------HN-----VLPNY-------FE 494
++GP+GCGK+TLL+L+ G E+P G ++L H V +Y E
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 495 QNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+N A L + K + R+ + L+ + DRK LSGG++
Sbjct: 61 ENVAFGLKMRKVPRAEIKP-----RVLEALRLVQL----EEFADRKPHQLSGGQQ 106
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 45/216 (20%), Positives = 89/216 (41%), Gaps = 42/216 (19%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
VL+++ E+K G+ V +VG +GAGKTT LR+I G ++ + S +
Sbjct: 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGK-----VEVP 451
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
+ ++S + E+ F E + + L S D++ +L+
Sbjct: 452 KNTVSALIPGEYEPEFGEVT--------ILEHLRSKTGDLNAAVEILNR----------- 492
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
+ L + + + S+G + R L K+L + P++LL+DE HL
Sbjct: 493 ---------AGLSDAVLYRRKFSE-----LSTGQKERAKLAKLLAERPNVLLIDEFAAHL 538
Query: 291 DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322
D T + + + + +++++H + L
Sbjct: 539 DELTAVRVARKISELAREAGITLIVVTHRPEVGNAL 574
|
Length = 593 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 2e-06
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 9/67 (13%)
Query: 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EK 475
+ ++NL D R+L + I+ G++ I GP+G GKS+L + + GL
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 476 PRGGEVL 482
P G ++L
Sbjct: 61 PEGEDLL 67
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 18/51 (35%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Query: 108 KGVTV---LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+G++V ++DV++EV+ GE VG+ G+ G G+T + G P SG +
Sbjct: 8 RGLSVKGAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEIT 58
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 5/70 (7%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPR---G 478
++ + +L Y + N +L E TA+IGP+G GKSTLL+ I M P
Sbjct: 5 ILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTIT 64
Query: 479 GEVLLGEHNV 488
G ++ HN+
Sbjct: 65 GSIVYNGHNI 74
|
Length = 252 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 3e-06
Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 7/61 (11%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S+++I + D L + A L IE E+ ++G NG GKSTL+K++ GEVL
Sbjct: 2 SLISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVL 54
Query: 483 L 483
L
Sbjct: 55 L 55
|
Length = 635 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++NL Y D + + RGE ++GPNG GK+T +K++ L KP G +
Sbjct: 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVA 60
Query: 485 EHNVL 489
H+V+
Sbjct: 61 GHDVV 65
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 3e-06
Identities = 33/111 (29%), Positives = 54/111 (48%), Gaps = 19/111 (17%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--PNYFEQNQAEALDL 503
+I E I+GPNG GK+T +K++ G+ KP G++ + V P Y + D
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKA------DY 74
Query: 504 DKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ TV + ++ +D ++ + K L +LDR+V LSGGE
Sbjct: 75 EGTVRDLLSSITKDFYTHPYFKTEIAKPLQ-----IEQILDREVPELSGGE 120
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 25/63 (39%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 424 VVTIKNLE--FGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
V++I+NL +G+ ++LF+ NL I GE + GP+G GK+TLL LI GL +
Sbjct: 1 VISIRNLNHYYGHGSLRKQVLFD-INLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQE 59
Query: 479 GEV 481
G +
Sbjct: 60 GSL 62
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 3e-06
Identities = 48/175 (27%), Positives = 69/175 (39%), Gaps = 54/175 (30%)
Query: 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVI--------KAKSNMKIAFLSQEFEVSMSRTVR 179
L+G +G GKTT LR++AG E+PDSG+++ I + Q + + TV
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVE 60
Query: 180 EEFMSAFKEEMEIAGKLE---RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236
E AF +M + E RV +AL V L+
Sbjct: 61 ENV--AFGLKMRKVPRAEIKPRVLEALRL------------------------VQLEEF- 93
Query: 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
DR S G Q R++L + L+ P +LLLDEP + LD
Sbjct: 94 ----------------ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALD 132
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
Y DR + + + + GE I+GPNG GKSTLL LI G + P+G
Sbjct: 270 YNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHPQG 313
|
Length = 490 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 3e-06
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
GE I+GP G GK+TL + + P GG V+
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIY 35
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 3e-06
Identities = 57/228 (25%), Positives = 101/228 (44%), Gaps = 51/228 (22%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAG 135
+FEN K NK SN + K+ + ++ + T+L VT GE + ++G +G+G
Sbjct: 50 KFENMK--NKGSNI-KRILGHKPKISDETRQIQERTILNGVTGMASPGEILAVLGPSGSG 106
Query: 136 KTTQLRIIAGQEEPDS--GNVIK-----AKSNMK-IAFLSQEFEVSMSRTVREEFMSAFK 187
K+T L +AG+ + ++ G ++ K +K F++Q+ + TVRE + F
Sbjct: 107 KSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLV--FC 164
Query: 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247
+ + L + +K A++V + ELG
Sbjct: 165 SLLRLPKSLTKQEKI----------------------LVAESV------------ISELG 190
Query: 248 FTADD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
T + G+ + S G + R+S+ +L +P LL+LDEPT+ LD
Sbjct: 191 LTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLD 238
|
Length = 659 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 3e-06
Identities = 52/199 (26%), Positives = 83/199 (41%), Gaps = 43/199 (21%)
Query: 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170
+L+D++ ++ G L+G NGAGK+T L+ +AG + G +
Sbjct: 15 AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAG-DLTGGG-------------APRGA 60
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA--------VDDMDLMGRLLDEFDL 222
V+ T+ E ++A A +L R++ L A ++ L+GR
Sbjct: 61 RVTGDVTLNGEPLAAID-----APRLARLRAVLPQAAQPAFAFSAREIVLLGRYPH---- 111
Query: 223 LQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------ 276
R+A A+ + + + G TA G R V + S G R+ ++L Q
Sbjct: 112 -ARRAGALTHRDGEI-AWQALALAGATALVG-RDVTTLSGGELARVQFARVLAQLWPPHD 168
Query: 277 ---DPDLLLLDEPTNHLDL 292
P LLLDEPT LDL
Sbjct: 169 AAQPPRYLLLDEPTAALDL 187
|
Length = 272 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 3e-06
Identities = 52/196 (26%), Positives = 83/196 (42%), Gaps = 48/196 (24%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
+++L V VK+GE + L+G +G+GK+T L I+AG ++ SG V + + Q
Sbjct: 23 LSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEV---------SLVGQP 73
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES--------AVDDMDLMGRLLDEFD 221
+ EE + + V +S A+++++L L E
Sbjct: 74 -------------LHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESS 120
Query: 222 LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV---ASFSSGWQMRMSLGKILLQDP 278
Q + A L+ +LG G RL A S G Q R++L + P
Sbjct: 121 -RQSRNGAK----------ALLEQLGL----GKRLDHLPAQLSGGEQQRVALARAFNGRP 165
Query: 279 DLLLLDEPTNHLDLDT 294
D+L DEPT +LD T
Sbjct: 166 DVLFADEPTGNLDRQT 181
|
Length = 228 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 20/44 (45%), Positives = 30/44 (68%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+++K+L+ Y D + NL IE + TA+IGP+GCGKST L+
Sbjct: 4 ISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLR 47
|
Length = 250 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 19/110 (17%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDK 505
I GE I+GPNG GK+T +KL+ G+ KP G + + P Y D D
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKPQYISP------DYDG 416
Query: 506 TVLETVAEAAED------WRIDDIKGL-LGRCNFKADMLDRKVSLLSGGE 548
TV + + A ++ + +K L L D+L+R V LSGGE
Sbjct: 417 TVEDLLRSAIRSAFGSSYFKTEIVKPLNLE------DLLERPVDELSGGE 460
|
Length = 591 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 432 FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
E R L N +L I G+ +IG NG GKSTLL I G KP G++L+ +V
Sbjct: 15 TPLEKRAL-NGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDV 70
|
Length = 263 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 41/208 (19%), Positives = 91/208 (43%), Gaps = 35/208 (16%)
Query: 94 ISSGVKLENISKSYKGVTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144
I + +++ N+SK+++ T L K V++ +++G+ + ++G NG+GK+T +++A
Sbjct: 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLA 60
Query: 145 GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
G EP SG ++ ++ + F F R + ++ ++ + I L+
Sbjct: 61 GMIEPTSGEIL--INDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILD----FPL 114
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
D++ R F+ L+ +G D + + G
Sbjct: 115 RLNTDLEPEQRRKQIFETLRM--------------------VGLLPDHANYYPHMLAPGQ 154
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDL 292
+ R++L + L+ P +++ DE LD+
Sbjct: 155 KQRVALARALILRPKIIIADEALASLDM 182
|
Length = 267 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 5e-06
Identities = 49/222 (22%), Positives = 100/222 (45%), Gaps = 30/222 (13%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K N++ Y L D+ ++++ + L+G +G GK+T LR +
Sbjct: 4 KTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFN-------------R 50
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
N KIA + E+ + V+ + + A ++ + + ++ ++S +++ +L
Sbjct: 51 MNDKIAKIDGLVEIE-GKDVKNQDVVALRKNVGMV--FQQPNVFVKSIYENISYAPKL-- 105
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLGKILL 275
N D +A V + ++G + D+L + S G Q R+ + + L
Sbjct: 106 -------HGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315
P LLLLDEPT+ LD + +E L + ++ M++++H+
Sbjct: 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHN 200
|
Length = 246 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 5e-06
Identities = 55/219 (25%), Positives = 99/219 (45%), Gaps = 28/219 (12%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
+L+ I K++ GV L V G + LVG NGAGK+T ++++ G D+G+
Sbjct: 6 QLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGS----- 60
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
I +L +E + ++ +E + +E+ + +L + + +GR
Sbjct: 61 ----ILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL---------TIAENIFLGR--- 104
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
EF + ++ + A+ KL+ L D+LV S G Q + + K+L +
Sbjct: 105 EF---VNRFGRIDWKKMYAEADKLLARLNLRF-SSDKLVGELSIGEQQMVEIAKVLSFES 160
Query: 279 DLLLLDEPTNHL-DLDTIEWLE--GYLGKQDVPMVIISH 314
++++DEPT+ L D +T L Q +V ISH
Sbjct: 161 KVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISH 199
|
Length = 501 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 25/56 (44%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
++V K++ F Y D + N + +I RG TA+IG NG GKST+ KLI GL P
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLP 59
|
Length = 282 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 6e-06
Identities = 21/70 (30%), Positives = 34/70 (48%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + +L Y + + + ++G +GPNG GKST +K+I G P G V +
Sbjct: 3 IRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVC 62
Query: 485 EHNVLPNYFE 494
+VL N E
Sbjct: 63 GEDVLQNPKE 72
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 6e-06
Identities = 59/269 (21%), Positives = 107/269 (39%), Gaps = 80/269 (29%)
Query: 94 ISSGVKLENISKSY--------------------KGVTVLKDVTWEVKKGEKVGLVGVNG 133
++ V ++N++K Y K L D++ + +G+ +GLVG+NG
Sbjct: 1 MNVSVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGING 60
Query: 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+GK+T II G P G V + EVS+ + I+
Sbjct: 61 SGKSTLSNIIGGSLSPTVGKVDRNG------------EVSV---------------IAIS 93
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
L +E+ M MG +RK ++ + P++ ++ G
Sbjct: 94 AGLSGQLTGIENIEFKMLCMG--------FKRK-----------EIKAMTPKIIEFSELG 134
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLG 303
+ + V +SSG + ++ + +PD+L++DE + D LD I +
Sbjct: 135 EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFK---- 190
Query: 304 KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+Q+ + +SH+ + Q CTKI E G
Sbjct: 191 EQNKTIFFVSHNLGQVRQFCTKIAWIEGG 219
|
Length = 264 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 6e-06
Identities = 41/180 (22%), Positives = 70/180 (38%), Gaps = 63/180 (35%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172
L +++ VK G L+G +GAGKTT L ++AG++ +G + + I + +
Sbjct: 23 LNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT--AGVI---TGEILIN--GRPLDK 75
Query: 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALE-SAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ R+ + + E+ ++ V++AL SA LL + QRK
Sbjct: 76 NFQRS------TGYVEQQDVHSPNLTVREALRFSA---------LLRGLSVEQRK----- 115
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
R+++G L P +L LDEPT+ LD
Sbjct: 116 -----------------------------------RLTIGVELAAKPSILFLDEPTSGLD 140
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 19/59 (32%), Positives = 35/59 (59%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V ++ + + + N ++ GEK A+IGP+G GKST+L+++M LE G++ +
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQV 59
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 24/59 (40%), Positives = 40/59 (67%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+K+EN+S SY LK+V++E+ +GE V ++G NG+GK+T +I+ G +P SG +
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
|
Length = 271 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.8 bits (108), Expect = 7e-06
Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 12/111 (10%)
Query: 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREE 181
GE + +VG G+GKTT R +A + P G VI + + ++ + ++
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYI--DGEDILEEVLDQLLLIIVGGKK 58
Query: 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232
+ + + +A L +K + +LDE L Q L
Sbjct: 59 ASGSGELRLRLA--LALARKLKPDVL--------ILDEITSLLDAEQEALL 99
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 8e-06
Identities = 17/38 (44%), Positives = 23/38 (60%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
E GE T ++G NG GK+TLL++I L P G+V
Sbjct: 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
|
Length = 245 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG---------EVLLGEH---NVLPNYF 493
+ G+ T I+GPNG GK+T +K++ G P G EVL + L NYF
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVL--KRFRGTELQNYF 152
Query: 494 EQNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR 539
++ + V E + + E ++D++ LG N +LDR
Sbjct: 153 KKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVDERGKLDEVVERLGLEN----ILDR 208
Query: 540 KVSLLSGGE 548
+S LSGGE
Sbjct: 209 DISELSGGE 217
|
Length = 590 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (115), Expect = 8e-06
Identities = 25/68 (36%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 425 VTIKNLEFGYEDRL---LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y+ R ++ N T+ G+ A +G +GCGKST+LKLI L P G++
Sbjct: 383 IQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI 442
Query: 482 LLGE-HNV 488
++ + HN+
Sbjct: 443 IINDSHNL 450
|
Length = 1466 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 8e-06
Identities = 74/321 (23%), Positives = 135/321 (42%), Gaps = 75/321 (23%)
Query: 98 VKLENISKSYK----GVTVLKDVTW----------------EVKKGEKVGLVGVNGAGKT 137
VK E+++K YK LKD+ + EV +GE VG++G+NG+GK+
Sbjct: 5 VKFEHVTKKYKMYNKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKS 64
Query: 138 TQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197
T +IAG P+ G V S IA S + G+L
Sbjct: 65 TLSNLIAGVTMPNKGTVDIKGSAALIAISSG-----------------------LNGQL- 100
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG---D 254
+ +++++L G ++ L ++ K+ +++PE+ AD G
Sbjct: 101 -------TGIENIELKGLMMG----LTKE-----------KIKEIIPEIIEFADIGKFIY 138
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-TIEWLE--GYLGKQDVPMVI 311
+ V ++SSG + R+ + +PD+L++DE + D T + L+ +Q +
Sbjct: 139 QPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFF 198
Query: 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIE--SQYAAWEKQQREIEQT 369
ISH + + CTK + G + Y G+ + V +++ +Q + E++ EQ
Sbjct: 199 ISHSLSQVKSFCTKALWLHYGQVKEY-GDIKEVVDHYDEFLKKYNQMSVEERKDFREEQI 257
Query: 370 KDLINRLGAGANSGRASSAEK 390
+ L +GR +K
Sbjct: 258 SQFQHGLLQEDQTGRERKRKK 278
|
Length = 549 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 40/180 (22%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171
+L+DV+ V +G+ ++G G+GK+T L+ + Q E G V +S IA++ Q+
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAERS---IAYVPQQAW 731
Query: 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231
+ M+ TVR + F EE D L A AV
Sbjct: 732 I-MNATVRGNIL-FFDEE----------------------------DAARL----ADAVR 757
Query: 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ L+A +++L G + G++ V + S G + R+SL + + + D+ LLD+P + LD
Sbjct: 758 VSQLEADLAQLGG--GLETEIGEKGV-NLSGGQKARVSLARAVYANRDVYLLDDPLSALD 814
|
Length = 1560 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-05
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490
+ T+ GE A++G NG GKSTL+K+I G+ P G + +G +
Sbjct: 31 DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCAR 77
|
Length = 510 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
N +L + GE I+G +G GKSTLL+ I L +P G+VL+
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLID 84
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Query: 427 IKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ + Y + LF+ L +GE ++GP+G GKS+LL+++ LE PR G
Sbjct: 5 LNGINCFYGAHQALFD-ITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT 58
|
Length = 242 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 23/66 (34%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +++ F Y + ++ + +L I+ GE I+G +G GKSTL KLI P G VL
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 483 LGEHNV 488
+ H++
Sbjct: 61 VDGHDL 66
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 19/36 (52%), Positives = 25/36 (69%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
I GE AI+G +G GKSTLL L+ GL+ P G+V+
Sbjct: 32 IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVI 67
|
Length = 233 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 1e-05
Identities = 31/76 (40%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 413 RFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
R ER R G V +N+ F Y DR + +L IE GE A++G +G GKSTL+ LI
Sbjct: 322 RAIERAR-GD--VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLI 378
Query: 471 MGLEKPRGGEVLLGEH 486
+P G++LL H
Sbjct: 379 PRFYEPDSGQILLDGH 394
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-05
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 3/65 (4%)
Query: 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478
SGR + I N+ F Y +D L+ NL++ A++G G GKSTL L+MG
Sbjct: 338 SGR--IDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 479 GEVLL 483
GE+ L
Sbjct: 396 GEIRL 400
|
Length = 592 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ L F Y D + +L E+ + TA+IGP+GCGKST L+
Sbjct: 10 RGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLR 50
|
Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 1e-05
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ +++ KNL Y ++ ++I + TA+IGP+GCGKSTLL+
Sbjct: 2 TMEIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLR 50
|
Length = 253 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 2e-05
Identities = 50/207 (24%), Positives = 90/207 (43%), Gaps = 24/207 (11%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVS 173
DV++ +++GE +G+ G+ GAG+T ++ + G GNV + I +Q
Sbjct: 278 DVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAG 337
Query: 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233
++ V E+ ++ I L V K + +V L F R A L
Sbjct: 338 IA-MVPED-----RKRHGIVPILG-VGKNITLSV---------LKSFCFKMRIDAAAELQ 381
Query: 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD 293
+ + + +L + S G Q + L K+LL +P +L+LDEPT +D+
Sbjct: 382 IIGSAIQRL----KVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVG 437
Query: 294 T---IEWLEGYLGKQDVPMVIISHDRA 317
I L L ++ V ++++S + A
Sbjct: 438 AKYEIYKLINQLAQEGVAIIVVSSELA 464
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 37/127 (29%), Positives = 53/127 (41%), Gaps = 27/127 (21%)
Query: 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501
AN T+ TA+ GP+G GK++L+ +I GL +P G + L VL + + L
Sbjct: 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR-VL---VDAEKGIFL 71
Query: 502 DLDK----------------TV---LETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVS 542
+K TV L + + D + LLG +LDR
Sbjct: 72 PPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLG----IEHLLDRYPG 127
Query: 543 LLSGGEK 549
LSGGEK
Sbjct: 128 TLSGGEK 134
|
Length = 352 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
N A+L I +GE I+G +G GKST ++++ L +P G++ + N++
Sbjct: 10 NDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIM 58
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 2e-05
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 12/103 (11%)
Query: 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
A A K+L L P + M + PE ++++N+ +
Sbjct: 285 SGARQAYKRLNELLANY----PSRDPAMPLPEPE------GHLSVENVTIVPPGGKKPTL 334
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ +++ GE AIIGP+G GKSTL +LI+G+ P G V L
Sbjct: 335 RGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRL 377
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 58/273 (21%), Positives = 108/273 (39%), Gaps = 67/273 (24%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+K+E ++ +Y G LK + +KKGE ++G NGAGK+T + + G +P SG +
Sbjct: 6 LKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILF 65
Query: 155 ------------IKAKSNMKIAFLS---QEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
+K + ++ + F Q F S+ + V ++ E E+ +RV
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVR---KRV 122
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
AL+ + L D+
Sbjct: 123 DNALKR-------------------------------TGIEHLK----------DKPTHC 141
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
S G + R+++ +L+ +P +L+LDEPT LD + ++ L + + ++I +HD
Sbjct: 142 LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD 201
Query: 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348
+ C + + G +GN + EK
Sbjct: 202 IDIVPLYCDNVFVMKEGRV-ILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 2/72 (2%)
Query: 98 VKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++LEN+S + G +LKD+++E+K G+++ + G +G GK++ R +AG SG +
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGM 60
Query: 157 AKSNMKIAFLSQ 168
+ FL Q
Sbjct: 61 P-EGEDLLFLPQ 71
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 55/227 (24%), Positives = 100/227 (44%), Gaps = 38/227 (16%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
V+ +++S +Y L D+++ + +G L+G NG+GK+T ++I G PD
Sbjct: 6 VEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP-- 63
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
N KI T+ + + +E++ I + Q + DD+
Sbjct: 64 ----NSKITVDGI--------TLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDV----- 106
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
F L R AV + V ++ ++G D D A+ S G + R+++ IL
Sbjct: 107 ---AFGLENR---AVPRPEMIKIVRDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILA 159
Query: 276 QDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHD 315
+P +++LDE T+ LD L I L+ K ++ ++ I+HD
Sbjct: 160 VEPKIIILDESTSMLDPAGKEQILKLIRKLK---KKNNLTVISITHD 203
|
Length = 282 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 20/44 (45%), Positives = 31/44 (70%)
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
T+ERG+ A++G +GCGKSTL +L+ +E P GGE+ ++L
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLL 80
|
Length = 327 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++LEN+S SY G L+++ +KKGE +G++G NG+GK+T + G P G V+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
|
Length = 274 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 2e-05
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 9/69 (13%)
Query: 427 IKNLEFGYEDRL-LFNRANL--------TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++NL + R F R + T+ G+ AIIG NG GKSTL K++ G+ +P
Sbjct: 7 VRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPT 66
Query: 478 GGEVLLGEH 486
GE+L+ +H
Sbjct: 67 SGELLIDDH 75
|
Length = 267 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
++ +K+L Y ++ N ++ IE+ TA+IGP+GCGKST L+ I
Sbjct: 20 HILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSI 67
|
Length = 268 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 420 SGRSVV-TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ + VV +NL Y + NL I E TAIIGP+GCGKST +K
Sbjct: 19 APKKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIK 68
|
Length = 271 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 424 VVTIKNLEFGYED------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477
++ KN+ + YE +L + NL +++GE I+G NG GKST+ K + L P
Sbjct: 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 478 GGEV 481
G+V
Sbjct: 64 EGKV 67
|
Length = 280 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 48/232 (20%), Positives = 85/232 (36%), Gaps = 47/232 (20%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174
D+ +K+GE + LVG +G+GK+ I G P +++ +I +
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGL-----TQTSGEILLDGRPLLPLS 58
Query: 175 SR-----TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
R T+ + +AF + ++L L+ +A
Sbjct: 59 IRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSK---------QARALILEALEA 109
Query: 230 VNLDTLDAKVSKLMP-ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN 288
V L +V K P +L S G R+ + LL +P L+ DEPT
Sbjct: 110 VGLPD-PEEVLKKYPFQL--------------SGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 289 HLDLDT----IEWLEGYLGKQDVPMVIISHDRAFL----DQLCT----KIVE 328
LD+ ++ L +++I+HD + D++ +IVE
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVE 206
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 19/48 (39%), Positives = 29/48 (60%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
N +L I G+ A++GP+G GK+TLL++I GLE G + +V
Sbjct: 19 NDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDV 66
|
Length = 353 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 24/61 (39%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 424 VVTIKNLEFGYEDRL-LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ ++N+ + Y D NL I++GE IIG NG GKSTL + GL +P+ G+VL
Sbjct: 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVL 60
Query: 483 L 483
+
Sbjct: 61 V 61
|
Length = 274 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 3e-05
Identities = 48/224 (21%), Positives = 83/224 (37%), Gaps = 62/224 (27%)
Query: 128 LVGVNGAGKTTQLRIIA----GQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFM 183
+VG NGAGKTT + + G+ P+S K L +E EV V+ F
Sbjct: 27 IVGQNGAGKTTIIEALKYALTGELPPNS------KGGAHDPKLIREGEVRAQ--VKLAFE 78
Query: 184 SAFKEEMEIAGKLERVQKALESAV----DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
+A ++ I L LE+ + + + L
Sbjct: 79 NANGKKYTITRSLA----ILENVIFCHQGESN---------WPLLD-----MRGRCSG-- 118
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEW-- 297
G++++AS +R++L + + +L LDEPT +LD + IE
Sbjct: 119 -------------GEKVLASLI----IRLALAETFGSNCGILALDEPTTNLDEENIEESL 161
Query: 298 ---LEGYLGKQDVPMVIISHDRAFLDQLCTKIVE---TEMGVSR 335
+E +++ +++I+HD +D I SR
Sbjct: 162 AEIIEERKSQKNFQLIVITHDEELVDAA-DHIYRVEKDGRQKSR 204
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 57/247 (23%), Positives = 104/247 (42%), Gaps = 61/247 (24%)
Query: 92 SSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
S + +K+ N+S Y +L+ V+ E+ + + ++G +G GK+T L+ + E +S
Sbjct: 2 SKLIPAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELES 61
Query: 152 GNVIKAKSNMKIAFLSQ---EFEVSMSRTVREEFMSAFKEEM-------------EIAG- 194
+ + ++ F +Q E V+++R R+ M K + +I G
Sbjct: 62 ----EVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGW 117
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
KLE + +ESA+ D DL +D ++ K LD
Sbjct: 118 RPKLE-IDDIVESALKDADL-------WDEIKHKIHKSALD------------------- 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
S G Q R+ + + L P +LL+DEP LD + ++ + ++
Sbjct: 151 -------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELT 203
Query: 309 MVIISHD 315
MVI+SH+
Sbjct: 204 MVIVSHN 210
|
Length = 261 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPM 309
DR S S G + R+++G+ LL P+LLL+DEP LDL + + +LE + ++P+
Sbjct: 123 DRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPI 182
Query: 310 VIISH 314
+ +SH
Sbjct: 183 LYVSH 187
|
Length = 352 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 3e-05
Identities = 59/247 (23%), Positives = 101/247 (40%), Gaps = 66/247 (26%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++EN+S Y VLK+V+++VK GEK+G+VG GAG
Sbjct: 7 IEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAG-------------------- 46
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK------LERVQKALESAVDD 209
KS + +A F+ A + ++EI G LE ++ +L D
Sbjct: 47 --KSTLILALFR--------------FLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQD 90
Query: 210 MDL-MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
L G + NLD D + + ++ G L S G + +
Sbjct: 91 PTLFSGTI------------RSNLDPFDEYSDEEIYGALRVSEGGLNL----SQGQRQLL 134
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD-RAFLDQLCTK 325
L + LL+ P +L+LDE T +D T ++ + + + ++ I+H R +D K
Sbjct: 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID--YDK 192
Query: 326 IVETEMG 332
I+ + G
Sbjct: 193 ILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-05
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+L F Y+D + NL T ++G NGCGKSTL + GL +P+ G VL
Sbjct: 6 DLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59
|
Length = 271 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 82/415 (19%), Positives = 158/415 (38%), Gaps = 99/415 (23%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQ----LRII-AGQEEPDSGNVIKAKSNMKIA 164
+ ++++++ +++GE + +VG +G+GK+ +R++ ++ + + ++
Sbjct: 29 IAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
LS++ M + F+E M L V E + + L E +++
Sbjct: 89 ELSEQSAAQMRHVRGADMAMIFQEPMT---SLNPVFTVGEQIAESIRLHQGASREEAMVE 145
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
K LD + ++ + R S G + R+ + L P +L+ D
Sbjct: 146 AKRM---LDQVRIPEAQTILS---------RYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 285 EPTNHLD-------LDTIEWLEGYLGKQDVPM--VIISHDRAFLDQLCTKIVETEMGVSR 335
EPT LD L I+ L+ +++ M + I+HD MGV
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQ-----KEMSMGVIFITHD---------------MGV-- 231
Query: 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ---------TKDL---INRLGA--GAN 381
V E A + Y + +EQ T+ L + +LGA G +
Sbjct: 232 ---------VAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLD 282
Query: 382 SGRASSAEKKLERLQEEEQIEKP--------FQRKQMKIRFPERG----RSGRSVVTIKN 429
R ++E IE+ Q + + RFP R R R V ++
Sbjct: 283 YPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEK 342
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ F + GE +++G +G GKST + ++ L + +GGE++
Sbjct: 343 VSF-------------DLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFN 384
|
Length = 623 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 49/157 (31%), Positives = 63/157 (40%), Gaps = 39/157 (24%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG----LEKPRG- 478
++T +L R + +L IE G TA++G NG GKSTLLK + G PRG
Sbjct: 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGA 60
Query: 479 ---GEVLL-GEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGR----- 529
G+V L GE P A L + VL A+ A + +I LLGR
Sbjct: 61 RVTGDVTLNGE----P--LAAIDAPRLARLRAVLPQAAQPAFAFSAREIV-LLGRYPHAR 113
Query: 530 -----------------CNFKADMLD-RKVSLLSGGE 548
A L R V+ LSGGE
Sbjct: 114 RAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE 150
|
Length = 272 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (107), Expect = 4e-05
Identities = 24/75 (32%), Positives = 45/75 (60%), Gaps = 2/75 (2%)
Query: 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANLTIERGEKT 453
Q++ ++++ +K+ ++ + + +V I+N F Y +R + + NL I+R + T
Sbjct: 52 QKKAELKQFLNKKKTQVDLLKEDFNHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVT 111
Query: 454 AIIGPNGCGKSTLLK 468
A IGP+GCGKST L+
Sbjct: 112 AFIGPSGCGKSTFLR 126
|
Length = 329 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 33/120 (27%), Positives = 43/120 (35%), Gaps = 35/120 (29%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG----EHNVLPN------YFEQNQAE 499
GE ++GPNG GKSTLL + G+ G + E Y Q Q
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 500 ALDL-----------DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ DKT E ++D+ G L D L R + LSGGE
Sbjct: 84 PFAMPVWHYLTLHQPDKTRTE---------LLNDVAGALAL----DDKLGRSTNQLSGGE 130
|
Length = 248 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 5e-05
Identities = 53/253 (20%), Positives = 108/253 (42%), Gaps = 49/253 (19%)
Query: 94 ISSGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+ + ENI Y + VL ++ ++K GE +G+VG +G+GK+T +++ P
Sbjct: 452 LRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQH 511
Query: 152 GNVIKAKSNMKI---AFLSQEFEVSM------SRTVREEFMSAFKEEMEIAGKLERVQKA 202
G V+ ++ I A+L ++ V + SR++R+ IA L
Sbjct: 512 GQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRD----------NIA--LCNPGAP 559
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + L G +F + G+ + G++ S
Sbjct: 560 FEHVIHAAKLAGAH--DFISELPQ--------------------GYNTEVGEKGAN-LSG 596
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320
G + R+++ + L+ +P +L+ DE T+ LD ++ + + + + ++II+H + +
Sbjct: 597 GQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR 656
Query: 321 QLCTKIVETEMGV 333
C +I+ E G
Sbjct: 657 A-CDRIIVLEKGQ 668
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-05
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 427 IKNLEFGYEDRLLFNR-----ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
I+NL Y + F + N+ IE GE +IG G GKSTL++ + GL KP G++
Sbjct: 5 IENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI 64
Query: 482 LLGEHNV 488
++ ++
Sbjct: 65 IIDGVDI 71
|
Length = 287 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 5e-05
Identities = 20/51 (39%), Positives = 31/51 (60%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
SG +V+ ++L Y D + ++ I + TA+IGP+GCGKST L+ I
Sbjct: 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85
|
Length = 285 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 35/146 (23%), Positives = 55/146 (37%), Gaps = 22/146 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL- 483
+ + + Y L GE ++GP+G GKS+LL+++ LE PR G + +
Sbjct: 3 IQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIA 62
Query: 484 GEHNVLPNYFEQNQAEALDLD-------------KTVLETVAEA-------AEDWRIDDI 523
G H L + TV E + EA ++D +
Sbjct: 63 GNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARA 122
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+ LL R DR LSGG++
Sbjct: 123 EKLLKRLRL-KPYADRYPLHLSGGQQ 147
|
Length = 242 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 6e-05
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 38/191 (19%)
Query: 96 SGVKLENISKSYKGVTV-LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++L N+ +Y+ + + +K+GE V L+G NG+GK+T ++ G +P SG +
Sbjct: 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + + +S A +LE +K + D L
Sbjct: 381 L----------------------LDGKPVS--------AEQLEDYRKLFSAVFSDYHL-- 408
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
FD L + ++ + +L + +DG S+G + R++L L
Sbjct: 409 -----FDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463
Query: 275 LQDPDLLLLDE 285
L++ D+L+LDE
Sbjct: 464 LEERDILVLDE 474
|
Length = 546 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 6e-05
Identities = 50/208 (24%), Positives = 91/208 (43%), Gaps = 56/208 (26%)
Query: 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
++ ++ SY G L ++ + + ++ ++G NGAGK+T R G +P SG+V+
Sbjct: 4 IETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLI 63
Query: 157 -----AKSNMK-------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIA-GKLERVQKAL 203
K N++ + F + + ++ S TV E +IA G +
Sbjct: 64 RGEPITKENIREVRKFVGLVFQNPDDQI-FSPTV----------EQDIAFGPIN------ 106
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+G LDE +T+ +VS + LG + DR+ S G
Sbjct: 107 ---------LG--LDE-------------ETVAHRVSSALHMLGLE-ELRDRVPHHLSGG 141
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLD 291
+ R+++ ++ +P +L+LDEPT LD
Sbjct: 142 EKKRVAIAGVIAMEPQVLVLDEPTAGLD 169
|
Length = 277 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 19/61 (31%), Positives = 35/61 (57%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
+ Y +L+ +++ + G + L G NGAGKTT L++IAG P+ G ++ + ++
Sbjct: 6 ELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSI 65
Query: 162 K 162
K
Sbjct: 66 K 66
|
Length = 200 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 6e-05
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 29/200 (14%)
Query: 97 GVKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
G+ L+N+S +Y+ T L DV ++ G +G G+GK+T ++++ G P
Sbjct: 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQ 61
Query: 152 GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211
G+V I S+ ++ + +R++ F + Q E+ + D+
Sbjct: 62 GSVRVDD--TLITSTSKNKDI---KQIRKKVGLVF--------QFPESQLFEETVLKDVA 108
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
+ F + Q +A+A+ + L +G + ++ S G R+++
Sbjct: 109 FGPQ---NFGVSQEEAEALAREKLAL--------VGISESLFEKNPFELSGGQMRRVAIA 157
Query: 272 KILLQDPDLLLLDEPTNHLD 291
IL +P +L+LDEPT LD
Sbjct: 158 GILAMEPKILVLDEPTAGLD 177
|
Length = 280 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
++ I+N Y ++ + I + + TAIIGP+GCGK+TLL+ I
Sbjct: 3 IIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSI 49
|
Length = 250 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 6e-05
Identities = 59/242 (24%), Positives = 99/242 (40%), Gaps = 67/242 (27%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAG 145
+++ ++ S+ V VL V E+ L+G +G+GK+T LR+ ++G
Sbjct: 4 IEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG 63
Query: 146 QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--------- 196
+ D ++ K M + L + ++ +S F E + + KL
Sbjct: 64 EVYLDGQDIFK----MDVIELRRRVQMVFQIPNPIPNLSIF-ENVALGLKLNRLVKSKKE 118
Query: 197 --ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254
ERV+ ALE A +L DE D LDA KL
Sbjct: 119 LQERVRWALEKA--------QLWDEVK-----------DRLDAPAGKL------------ 147
Query: 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVII 312
S G Q R+ + + L P++LL DEPT +LD + +E K+D+ +V++
Sbjct: 148 ------SGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLV 201
Query: 313 SH 314
+H
Sbjct: 202 TH 203
|
Length = 250 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-05
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 4/77 (5%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDR 316
S G + R+ L + L +P +L+LDEP +HLD++ L L ++I+H
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 317 AFLDQLCTKIVETEMGV 333
L +I+ E G
Sbjct: 157 ETL-ASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++E+IS Y LKDV++ V +GE V +VG NG+GK+T +++ G P++G +
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
|
Length = 279 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 7e-05
Identities = 48/223 (21%), Positives = 92/223 (41%), Gaps = 28/223 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+K+EN++ Y LK+V+ ++ K L+G +G GK+T +R + + I+
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG 72
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
K +++ + E + + + ++ S D++ R+
Sbjct: 73 KVSIE------------GEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRI- 119
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
N LD V + + DRL + S S G Q R+ + + L
Sbjct: 120 ----------HGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTL 169
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P ++L DEPT+ LD + +E + K+D +VI++H+
Sbjct: 170 AVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHN 212
|
Length = 258 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 8e-05
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
F + L FS G + R++L +ILLQD ++LLDEPT LD T
Sbjct: 87 FDTTLRNNLGRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPIT 133
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 59/260 (22%), Positives = 106/260 (40%), Gaps = 69/260 (26%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ + + G+ + +V EV++ E V L+G NGAGKTT + G +P G +
Sbjct: 7 SVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRG 66
Query: 155 --IKAKSNMKIAFLS-----QEFEVSMSRTVREEFMSAFKEEME---IAGKL------ER 198
I+ +IA + Q + TV E + A ++++ +G L
Sbjct: 67 QHIEGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRA 126
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
+AL+ A ++ +G L + R QA NL
Sbjct: 127 ESEALDRAATWLERVGLL----EHANR--QAGNL-------------------------- 154
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPT---NHLDLDTIEWLEGYLGKQ-DVPMVIISH 314
+ G Q R+ + + ++ P++L+LDEP N + ++ L L + +V +++I H
Sbjct: 155 --AYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEH 212
Query: 315 DRAFLDQLCTKIVETEMGVS 334
D K+V MG+S
Sbjct: 213 D--------MKLV---MGIS 221
|
Length = 255 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 19/44 (43%), Positives = 29/44 (65%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ + NL F Y+ + + ++ I + + TAIIGP+GCGKST LK
Sbjct: 8 IKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLK 51
|
Length = 261 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 8e-05
Identities = 19/49 (38%), Positives = 29/49 (59%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+++ +NL Y D N N+ I + TA+IGP+GCGKST L+ +
Sbjct: 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTL 53
|
Length = 254 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 9e-05
Identities = 17/47 (36%), Positives = 29/47 (61%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ ++NL ++D + NL I + TA+IGP+GCGKST ++ +
Sbjct: 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49
|
Length = 250 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ I+ + + D+ + + + GE ++GPNG GK+T ++I+GL +P GE+
Sbjct: 3 LEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI 59
|
Length = 300 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 50/226 (22%), Positives = 106/226 (46%), Gaps = 38/226 (16%)
Query: 102 NISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKA 157
NIS+ Y + +LKD+T ++ G++G +G+GK+T L+++ E DS K
Sbjct: 12 NISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS----KI 67
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA--GKLERVQKALES-AVDDMDLMG 214
K + K+ + ++ + +R+E F++ + + L+S + + +
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSGWQMRMSLG 271
++++E + ++G + DRL + S G Q R+++
Sbjct: 128 KIVEE----------------------CLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIA 165
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
+ L P +LL+DEPT+ +D+ + +E + K ++ +VI+SH+
Sbjct: 166 RALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHN 211
|
Length = 257 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 57/239 (23%), Positives = 102/239 (42%), Gaps = 43/239 (17%)
Query: 91 ASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-- 148
S ++ ++ Y G LK++ V + + L+G +G GK+T LR +
Sbjct: 10 VSPTQQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLY 69
Query: 149 PDS---GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202
P + G +I N+ I LS E EV M ++ + + F + +
Sbjct: 70 PGNHYEGEIILHPDNVNI--LSPEVDPIEVRMRISMVFQKPNPFPKSI------------ 115
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VAS 259
E+ + + G ++R++ L+ +V + + DRL +
Sbjct: 116 FENVAYGLRIRG--------VKRRS------ILEERVENALRNAALWDEVKDRLGDLAFN 161
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
S G Q R+ + + L DP++LL DEPT+ LD +IE L L K V ++I++H+
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL-KNKVTILIVTHN 219
|
Length = 265 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 401 IEKPF------QRKQMKIRFPERGRSGRSVVTIKNLEFGYE-DRLLFNRANLTIERGEKT 453
+EK F P V N+ F Y+ R + N + TI G+
Sbjct: 233 MEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTV 292
Query: 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
AI+G +G GKST+L+L+ G + +
Sbjct: 293 AIVGESGAGKSTILRLLFRFYDVNSGSITI 322
|
Length = 497 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 1e-04
Identities = 20/43 (46%), Positives = 27/43 (62%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
++KNL Y + + NL I + E TA IGP+GCGKST L+
Sbjct: 7 SVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLR 49
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 1e-04
Identities = 23/55 (41%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL---IMGLEKP 476
+ +K+L F Y ++ I R + TAIIGP+GCGKST +K I LE P
Sbjct: 8 IKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGP 62
|
Length = 259 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL 489
N + GE +GPNG GK+T ++++ L +P G + ++V+
Sbjct: 13 NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVV 58
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 2e-04
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 262 SGWQM-RMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLEGYLG-KQDVPMVIISHDRAF 318
SG Q R+++ + LL+DP +L+LDE T+ LD +T LE + +++I+H +
Sbjct: 98 SGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLS- 156
Query: 319 LDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 157 TIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 2e-04
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502
G+ A++G NG GKSTLLK++ G +P G +L+ F + AL
Sbjct: 25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRF-ASTTAALA 78
|
Length = 501 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+LT+ GE A+ GP+G GKSTLLK + P G +L
Sbjct: 24 LKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRIL 66
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 56/237 (23%), Positives = 90/237 (37%), Gaps = 53/237 (22%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------ 154
E ++ Y TV +++T E+ G ++G NG GK+T LR ++ P G+V
Sbjct: 11 EQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEH 70
Query: 155 ----IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
+ +I L+Q TV+E + R +K E AV
Sbjct: 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPL---FTRWRKEDEEAV--- 124
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
+K M G T D+ V + S G + R +
Sbjct: 125 -----------------------------TKAMQATGIT-HLADQSVDTLSGGQRQRAWI 154
Query: 271 GKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+L Q+ ++LLDEPT LD +D +E L ++ + + HD L+Q C
Sbjct: 155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHD---LNQAC 208
|
Length = 265 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+L I GE AI+G +G GKSTL+ ++ L+KP G
Sbjct: 28 SLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT 64
|
Length = 648 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 54/226 (23%), Positives = 100/226 (44%), Gaps = 41/226 (18%)
Query: 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156
+++E++ YK G LK ++ + +G K L+G NGAGK+T L + G P G
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG---- 60
Query: 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDL---- 212
++ + +E + VR + F++ + Q + DD+
Sbjct: 61 -----RVKVMGREVNAENEKWVRSKVGLVFQDPDD--------QVFSSTVWDDVAFGPVN 107
Query: 213 MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272
MG LD+ ++ +R +A L + D D+ S G + R+++
Sbjct: 108 MG--LDKDEVERRVEEA--LKAVRMW------------DFRDKPPYHLSYGQKKRVAIAG 151
Query: 273 ILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDVPMVIISHD 315
+L DPD+++LDEP +LD +T+ + L Q +++ +HD
Sbjct: 152 VLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHD 197
|
Length = 274 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-04
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ K + + + + ++ E G I+GP+G GKSTL+KLI L P G +L+
Sbjct: 4 IEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILI 62
|
Length = 241 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 2e-04
Identities = 20/48 (41%), Positives = 29/48 (60%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145
+ L N SY +L +++W+V GE +VG NGAGK+T L +I G
Sbjct: 261 IVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG 308
|
Length = 490 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 2e-04
Identities = 50/231 (21%), Positives = 93/231 (40%), Gaps = 43/231 (18%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSG 152
++++++S Y + D++ +++K L+G +G GK+T LR I + G
Sbjct: 22 LEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG 81
Query: 153 NVIKAKSNM---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL--ERVQKALESAV 207
++ N+ I ++ E+ M F + + A K ER + L+ V
Sbjct: 82 EILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIV 141
Query: 208 DDMDLMGRLLDEF-DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
++ L DE D L A S S G Q
Sbjct: 142 EESLTKAALWDEVKDRLHSSA------------------------------LSLSGGQQQ 171
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
R+ + + L P +LLLDEP + LD + +E + K++ ++I++H+
Sbjct: 172 RLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHN 222
|
Length = 268 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 23/63 (36%), Positives = 38/63 (60%), Gaps = 5/63 (7%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+K+EN++ Y T L +V E++ GE VGL+G G+GK+T ++ + G +P SG
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 153 NVI 155
+I
Sbjct: 63 KII 65
|
Length = 287 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 52/222 (23%), Positives = 88/222 (39%), Gaps = 32/222 (14%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+EN+ Y LK + + + L+G +G GK+T LR + + G I K
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKL 65
Query: 160 NMKIAFLSQEFEVSMSR-TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
M + +V+ R V F M I E V L
Sbjct: 66 TMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSI---YENVAYGL--------------- 107
Query: 219 EFDLLQRKAQAV-NLDTLDAKVSKLMPELGFTADDGDRLVA---SFSSGWQMRMSLGKIL 274
+AQ + + LD V + + + DRL + S G Q R+ + + +
Sbjct: 108 -------RAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTI 160
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISH 314
+PD++L+DEPT+ LD +E + K++ +VI++H
Sbjct: 161 AMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 54/234 (23%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
++++ Y +K+V +V++G L+G +G GKTT LR I + G A+
Sbjct: 8 QDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPG----ARVT 63
Query: 161 MKIAFLSQEF------EVSMSRTVREEF--------MSAFKEEMEIAGKLERVQKALESA 206
+I Q+ V+M R V F MS F ++
Sbjct: 64 GRILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVF-----------------DNV 106
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL---VASFSSG 263
V + L G + D L++ +++ L +V DRL S G
Sbjct: 107 VAGLKLAG-IRDRDHLMEVAERSLRGAALWDEVK-------------DRLKTPATGLSGG 152
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
Q R+ + + L +P++LL+DEPT+ LD + +E + K+ ++I++H+
Sbjct: 153 QQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHN 206
|
Length = 252 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 45/195 (23%), Positives = 74/195 (37%), Gaps = 58/195 (29%)
Query: 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--------------QEEPDSGNVIKAKSN 160
+ + ++++GE L+G++G+GK+T LR + G D N A
Sbjct: 42 NASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLR 101
Query: 161 M----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+++ + Q+F + RTV E AF EM+ K ER ++ E
Sbjct: 102 RLRTHRVSMVFQQFALLPWRTVEENV--AFGLEMQGMPKAERRKRVDE------------ 147
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+ + V L A DR S G Q R+ L +
Sbjct: 148 ---------QLELVGL-----------------AQWADRKPGELSGGMQQRVGLARAFAT 181
Query: 277 DPDLLLLDEPTNHLD 291
+ +LL+DEP + LD
Sbjct: 182 EAPILLMDEPFSALD 196
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.0 bits (101), Expect = 2e-04
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK-------LIMGLEKPRGGE 480
KNL Y ++ N NL I + TA+IGP+GCGKST L+ LI ++ GE
Sbjct: 8 KNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIE--GE 65
Query: 481 VLLGEHNV 488
VLL N+
Sbjct: 66 VLLDGKNI 73
|
Length = 251 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 33/128 (25%), Positives = 52/128 (40%), Gaps = 38/128 (29%)
Query: 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---------------NVLPNYFE 494
G+ ++GPNG GKST LK++ G KP LG+ + L NYF
Sbjct: 26 GQVLGLVGPNGIGKSTALKILAGKLKPN-----LGKFDDPPDWDEILDEFRGSELQNYFT 80
Query: 495 QNQAEALD--------------LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRK 540
+ + + V E + + E ++D++ L + +LDR
Sbjct: 81 KLLEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRH----VLDRN 136
Query: 541 VSLLSGGE 548
+ LSGGE
Sbjct: 137 IDQLSGGE 144
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 3e-04
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
R + NL I+ G+ A++G +G GK+TLL++I+G +K RG E
Sbjct: 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEK 440
|
Length = 593 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 3e-04
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-LLGE 485
L ++RGE A+IG +G GKSTLL ++ GL+ GEV L+G+
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQ 72
|
Length = 228 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (99), Expect = 3e-04
Identities = 55/224 (24%), Positives = 99/224 (44%), Gaps = 29/224 (12%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ +++ SY L ++ + ++ E L+G +G GK+T LR + + D N+
Sbjct: 5 ISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMND-DIENI--- 60
Query: 158 KSNMKIAFLSQEFEVSMSRTV--REEFMSAFKEEMEIAGKL-ERVQKALESA-VDDMDLM 213
K +I F Q S V R+E F++ + + V L+ A V D +L+
Sbjct: 61 KITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELI 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ ++E K + + E T D+ DR +FS G Q R+ + +
Sbjct: 121 DQRVEE----------------SLKQAAIWKE---TKDNLDRNAQAFSGGQQQRICIARA 161
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
L P ++LLDEPT+ LD + +E L K ++++H+
Sbjct: 162 LAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHN 205
|
Length = 251 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 18/51 (35%), Positives = 30/51 (58%)
Query: 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
S +++++N+ Y I RG+ TA+IGP+GCGKST+L+ +
Sbjct: 9 SKNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSL 59
|
Length = 269 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
+L++ GE + GP+G GKSTLL+ + P G++L+ H
Sbjct: 27 LRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILV-RH 72
|
Length = 235 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
N E+G+ AI+G G GKSTL++ I L KP G V + +
Sbjct: 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDD 68
|
Length = 286 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 65/239 (27%), Positives = 104/239 (43%), Gaps = 72/239 (30%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
++L ++++S T L ++ EV+ GE + LVG NGAGK+T L +AG SG++
Sbjct: 4 MQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGSGSIQFA 58
Query: 155 ---IKAKSNMKI----AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
++A S ++ A+LSQ+ + V +++ + + L V AL A+
Sbjct: 59 GQPLEAWSATELARHRAYLSQQQTPPFAMPVW-HYLTLHQPDKTRTELLNDVAGAL--AL 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG-WQM 266
DD +LG R S G WQ
Sbjct: 116 DD-----------------------------------KLG-------RSTNQLSGGEWQ- 132
Query: 267 RMSLGKILLQ-----DPD--LLLLDEPTNHLDL---DTIEWLEGYLGKQDVPMVIISHD 315
R+ L ++LQ +P LLLLDEP N LD+ ++ L L +Q + +V+ SHD
Sbjct: 133 RVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHD 191
|
Length = 248 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 20/42 (47%), Positives = 27/42 (64%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
I+NL+ Y + NL I + TA+IGP+GCGKSTLL+
Sbjct: 6 IENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLR 47
|
Length = 249 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 4e-04
Identities = 52/203 (25%), Positives = 79/203 (38%), Gaps = 61/203 (30%)
Query: 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI------------IAGQE--EPDS 151
S G T+ + + + G+++ LVG +GAGKT+ L I G E E D
Sbjct: 359 SPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGSLKINGIELRELD- 417
Query: 152 GNVIKAKSNMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
++++ Q T+R+ + + + E++Q+ALE+A
Sbjct: 418 ----PESWRKHLSWVGQNPQLPHG----TLRDNVLLGNPDASD-----EQLQQALENA-- 462
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
+ EF LDT +G D L S G R+
Sbjct: 463 -------WVSEF----LPLLPQGLDT----------PIG---DQAAGL----SVGQAQRL 494
Query: 269 SLGKILLQDPDLLLLDEPTNHLD 291
+L + LLQ LLLLDEPT LD
Sbjct: 495 ALARALLQPCQLLLLDEPTASLD 517
|
Length = 588 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-04
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL-LGEH 486
L + GE ++G +GCGKST + I+GL K GEV LG+
Sbjct: 41 TLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84
|
Length = 331 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 4e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
Q ++ E+G S ++ L G +D A+L IE GE I+G +G GKST+++
Sbjct: 19 QRAFKYIEQGLSKEQILEKTGLSLGVKD------ASLAIEEGEIFVIMGLSGSGKSTMVR 72
Query: 469 LIMGLEKPRGGEVLL 483
L+ L +P G+VL+
Sbjct: 73 LLNRLIEPTRGQVLI 87
|
Length = 400 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 20/47 (42%), Positives = 25/47 (53%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ V I + Y NL+I E TAIIGP+GCGKST +K
Sbjct: 10 QEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIK 56
|
Length = 259 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 55/219 (25%), Positives = 98/219 (44%), Gaps = 49/219 (22%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+D+++ V+ G++VGL+G G+GK+T L + + LS
Sbjct: 1231 GRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSAL-------------------LRLLST 1271
Query: 169 EFEVSMS---------RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
E E+ + +T R+ F ++ +G + ++D + DE
Sbjct: 1272 EGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRK----------NLDPYEQWSDE 1321
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
+ + A+ V L ++ + + +L F DG ++ S+G + M L + +L
Sbjct: 1322 --EIWKVAEEVGLKSV---IEQFPDKLDFVLVDGGYVL---SNGHKQLMCLARSILSKAK 1373
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR 316
+LLLDEP+ HLD T++ + L KQ VI+S R
Sbjct: 1374 ILLLDEPSAHLDPVTLQIIRKTL-KQSFSNCTVILSEHR 1411
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
++++ ++ L + + +L I GE A++GP+G GKSTLL+ + GL
Sbjct: 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGL 53
|
Length = 262 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 4/68 (5%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPM 309
D L +FS G Q R+ + + L+ P L+ +DEPT LD+ ++ L G + + + +
Sbjct: 146 DDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205
Query: 310 VIISHDRA 317
VI++HD A
Sbjct: 206 VIVTHDLA 213
|
Length = 258 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 5e-04
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 420 SGRSVVTI--KNLE-FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476
+ VTI ++LE + + L N T+ G++ A++GP+G GK++LL ++G
Sbjct: 343 ASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFLPY 402
Query: 477 RG 478
+G
Sbjct: 403 QG 404
|
Length = 588 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKL 469
+++ F Y D ++ IE A IGP+GCGKST L+L
Sbjct: 7 RDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRL 48
|
Length = 250 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 5e-04
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ ++T ++ Y +L + E TA+IGP+GCGKST L+
Sbjct: 2 AKKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLR 49
|
Length = 252 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 5e-04
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-----G 479
+ I+ + F Y + N+ + TAIIGP+GCGKSTLL+ + + G
Sbjct: 5 IKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG 64
Query: 480 EVLLGEHNVL-PN 491
VLL N+ PN
Sbjct: 65 AVLLDNENIYSPN 77
|
Length = 251 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 6e-04
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L G+ +IIG +G GKST L+ I LEKP G + + +
Sbjct: 27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEI 70
|
Length = 256 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----GGEVLLGEHNVLPNYFEQNQA 498
NL+++RGE A++G +G GKS I+GL P GE+LL +LP
Sbjct: 6 NLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHI 64
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 7e-04
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
Query: 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L ++ LL+LDEPT L +E L L Q V ++ ISH
Sbjct: 95 RALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 7e-04
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L F + +F + ++ GE + G NG GK+TLL+++ GL G++ +
Sbjct: 17 LAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTA 75
|
Length = 214 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 60/245 (24%), Positives = 106/245 (43%), Gaps = 61/245 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNV 154
+++N+ S +LK + + KGE ++G NG+GK+T ++IAG P G++
Sbjct: 9 EIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH--PAYKILEGDI 66
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ ++ L E E R F+ AF+ +EI G V + D +
Sbjct: 67 LFKGESI----LDLEPE---ERAHLGIFL-AFQYPIEIPG------------VSNADFL- 105
Query: 215 RL----------LDEFD------LLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
RL L E D ++ K + V +D L ++G
Sbjct: 106 RLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPS---------FLSRNVNEG----- 151
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGY--LGKQDVPMVIISHD 315
FS G + R + ++ L D +L +LDE + LD+D ++ + EG L + +++I+H
Sbjct: 152 -FSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHY 210
Query: 316 RAFLD 320
+ LD
Sbjct: 211 QRLLD 215
|
Length = 252 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 7e-04
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 4/63 (6%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
G V+ ++ L + + GE I G G G++ L + + GL P GE
Sbjct: 1 GEPVLEVRGLSVK----GAVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGE 56
Query: 481 VLL 483
+ L
Sbjct: 57 ITL 59
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 7e-04
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
+ ++NL Y ++ ++ I + TA+IGP+GCGKST ++
Sbjct: 13 IKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIR 56
|
Length = 258 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 45/162 (27%), Positives = 63/162 (38%), Gaps = 49/162 (30%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--MGLEKPRG---G 479
+ +K+L Y NL IE TA IGP+GCGKST+L+ + M P G
Sbjct: 5 IDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG 64
Query: 480 EVLLGEHNVL-------------------PNYF-----EQNQAEALDLD----KTVLETV 511
EVLL ++ PN F N L L+ K L+ +
Sbjct: 65 EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDEL 124
Query: 512 AE----AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
E A W +++K D LD+ LSGG++
Sbjct: 125 VEKSLRGANLW--NEVK----------DRLDKPGGGLSGGQQ 154
|
Length = 258 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 8e-04
Identities = 53/224 (23%), Positives = 89/224 (39%), Gaps = 34/224 (15%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161
N++ + G TVL V+ L+G G+GKTT LR + + SG
Sbjct: 26 NLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG--------- 76
Query: 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLD 218
+ S + + +++ +E G L + ++ D L G
Sbjct: 77 --------YRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFPMSIMDNVLAG---- 124
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILL 275
R + V + E+G DRL S S G Q + L + L
Sbjct: 125 -----VRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLA 179
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317
+P++LLLDEPT+ LD T E +E ++ + ++I++H+ A
Sbjct: 180 VNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLA 223
|
Length = 276 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRGGEVL 482
+ +KNL ++ + + + TIE GE I+G +G GKS L+ ++ G++ +P G ++
Sbjct: 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRII 60
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 49/224 (21%), Positives = 92/224 (41%), Gaps = 42/224 (18%)
Query: 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
L+N+ +L ++++ ++ GE + G +G GK+T L+I+A P SG ++
Sbjct: 10 LQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 160 NMKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ I+ L E +VS F + + ++ Q D +
Sbjct: 70 D--ISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQP-------DPAIFLDD 120
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
L+ F L L +++L S G + R+SL + L
Sbjct: 121 LERFALPD--------TILTKNIAEL------------------SGGEKQRISLIRNLQF 154
Query: 277 DPDLLLLDEPTNHLDLDTI----EWLEGYLGKQDVPMVIISHDR 316
P +LLLDE T+ LD E + Y+ +Q++ ++ ++HD+
Sbjct: 155 MPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK 198
|
Length = 225 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 39.9 bits (93), Expect = 0.001
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ GE I+GPNG GK+T +K++ G P G
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND 56
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.001
Identities = 17/57 (29%), Positives = 26/57 (45%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ L Y R + + GE I+G +G GK+TLL + P GEV
Sbjct: 8 SVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVH 64
|
Length = 258 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.001
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G Q R++ ++LL P + LDE T+ LD ++
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEES 126
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 44/188 (23%), Positives = 87/188 (46%), Gaps = 33/188 (17%)
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE 169
V L V++ +++G+ + +VG +G GK+T R++ E P G + ++ A E
Sbjct: 28 VKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA--DPE 85
Query: 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229
+ + + ++ F + + G L +K +G++L+E
Sbjct: 86 AQKLLRQKIQIVFQNPY-------GSLNPRKK-----------VGQILEE-------PLL 120
Query: 230 VNLDTLDA-----KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+N L A K +M ++G + DR FS G + R+++ + L+ DPD+++ D
Sbjct: 121 INTS-LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVAD 179
Query: 285 EPTNHLDL 292
EP + LD+
Sbjct: 180 EPVSALDV 187
|
Length = 327 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Query: 98 VKLENISKSY------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
+K +N+S Y L DV EVKKGE + ++G NG+GK+T + + P
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 152 GNVI 155
G V
Sbjct: 65 GKVY 68
|
Length = 280 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL----KLIMGLEKPR 477
+ + I++L+ + + + NL I TA++GP+G GKSTLL +LI + R
Sbjct: 1 MNKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEAR 60
Query: 478 -GGEVLL 483
GEV L
Sbjct: 61 VSGEVYL 67
|
Length = 250 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (94), Expect = 0.001
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRG---GEV 481
+ L F Y N+ + + TA+IGP+GCGKST L+ + P GE+
Sbjct: 19 VNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEI 78
Query: 482 LLGEHNV 488
+L NV
Sbjct: 79 ILHPDNV 85
|
Length = 265 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 17/49 (34%), Positives = 30/49 (61%)
Query: 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
++++ K++ Y + + +L E E TA+IGP+GCGKST L+ +
Sbjct: 2 ENIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCL 50
|
Length = 251 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 53/221 (23%), Positives = 90/221 (40%), Gaps = 58/221 (26%)
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--------------IKAK 158
+KD + +++GE ++G++G+GK+T +R++ EP G V ++
Sbjct: 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREV 103
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
KIA + Q F + TV + +AF E+ ER +KAL++
Sbjct: 104 RRKKIAMVFQSFALMPHMTVLDN--TAFGMELAGINAEERREKALDA------------- 148
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+ V L+ + D L S G + R+ L + L +P
Sbjct: 149 --------LRQVGLEN-------------YAHSYPDEL----SGGMRQRVGLARALAINP 183
Query: 279 DLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHD 315
D+LL+DE + LD + + L K +V ISHD
Sbjct: 184 DILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
|
Length = 400 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 19/45 (42%), Positives = 26/45 (57%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
V+ +NL Y L L I + + TA IGP+GCGKST+L+
Sbjct: 10 VLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILR 54
|
Length = 264 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.001
Identities = 52/191 (27%), Positives = 88/191 (46%), Gaps = 45/191 (23%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPD---SGNVIKAKSNMKI 163
+L++VT + G L+GV+GAGKTT + ++AG++ E D SG K ++ +I
Sbjct: 895 LLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARI 954
Query: 164 AFLSQEFEV-SMSRTVREEFM-SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFD 221
+ ++ ++ S TVRE + SAF + K E++ +DE
Sbjct: 955 SGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKM---------------MFVDEV- 998
Query: 222 LLQRKAQAVNLDTL-DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280
+ V LD L DA V G V S+ + R+++ L+ +P +
Sbjct: 999 -----MELVELDNLKDAIV-------------GLPGVTGLSTEQRKRLTIAVELVANPSI 1040
Query: 281 LLLDEPTNHLD 291
+ +DEPT+ LD
Sbjct: 1041 IFMDEPTSGLD 1051
|
Length = 1470 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 51/213 (23%), Positives = 98/213 (46%), Gaps = 47/213 (22%)
Query: 96 SGVKLENIS-KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+G+K ENI + G +++ +++EV G + + G NG GK++ RI+ P G
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGEL-WPVYGGR 508
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEF---MSAFKEEMEIAGKLERVQKALESAVDDMD 211
+ + K+ ++ Q +++ T+R++ S E+M+ G + K LE +D++
Sbjct: 509 LTKPAKGKLFYVPQRPYMTL-GTLRDQIIYPDS--SEDMKRRGLSD---KDLEQILDNVQ 562
Query: 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMS 269
L +L+R E G++A D D L S G + R++
Sbjct: 563 LT-------HILER-------------------EGGWSAVQDWMDVL----SGGEKQRIA 592
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL 302
+ ++ P +LDE T+ + +D +EGY+
Sbjct: 593 MARLFYHKPQFAILDECTSAVSVD----VEGYM 621
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.001
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
L + + G I GPNGCGKS+L +++ L GG
Sbjct: 467 LIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGG 507
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 409 QMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLL 467
+++ P G V+ +++L + + + + GE I G G G+S L+
Sbjct: 243 VLRVVKPPS-TPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELV 301
Query: 468 KLIMGLEKPRGGEVLLGEHNVLPNY 492
+ I GL KP G +LL +VL
Sbjct: 302 EAISGLRKPASGRILLNGKDVLGRL 326
|
Length = 501 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 18/43 (41%), Positives = 28/43 (65%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486
NLT+ GE A++G NG GKSTL+K++ G+ +P G + +
Sbjct: 25 NLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNI 67
|
Length = 510 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 19/66 (28%), Positives = 38/66 (57%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +T KNL Y+ R + +LT+ GE ++GPNG GK+T +++G+ G ++
Sbjct: 2 ATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNII 61
Query: 483 LGEHNV 488
+ + ++
Sbjct: 62 IDDEDI 67
|
Length = 241 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Query: 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ KN+ Y + + +I+ GEK I+G G GKS+LL + L + G +L
Sbjct: 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSIL 62
Query: 483 LGEHN 487
+ +
Sbjct: 63 IDGVD 67
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 19/38 (50%), Positives = 26/38 (68%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
NL IE+GE AI G G GK++LL LI+G +P G++
Sbjct: 57 NLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKI 94
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 46/190 (24%), Positives = 76/190 (40%), Gaps = 43/190 (22%)
Query: 100 LENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
L N++ +Y + + +K+GE + L+G NG+GK+T ++ G +P SG +
Sbjct: 325 LRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI---- 380
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV-DDMDLMGRLL 217
L + V+ + E++ F SAV D L +LL
Sbjct: 381 ------LLDGK-PVTAEQ--PEDYRKLF------------------SAVFTDFHLFDQLL 413
Query: 218 DEFDLLQRKAQAVN--LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ V L+ L KL +DG S G + R++L L
Sbjct: 414 GP-EGKPANPALVEKWLERLKMA-HKL------ELEDGRISNLKLSKGQKKRLALLLALA 465
Query: 276 QDPDLLLLDE 285
++ D+LLLDE
Sbjct: 466 EERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (93), Expect = 0.002
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+ R LF+ +L +++G TA+IG G GKSTLL+ + GL +P G+V +G+
Sbjct: 17 FASRALFD-IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGD 67
|
Length = 288 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 7/68 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S S G Q R+ + + L +P++LL+DEPT+ LD + T IE L L K+D
Sbjct: 138 DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQEL-KKDY 196
Query: 308 PMVIISHD 315
+VI++H+
Sbjct: 197 TIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.002
Identities = 42/141 (29%), Positives = 60/141 (42%), Gaps = 29/141 (20%)
Query: 430 LEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487
LE ++ +L L NLT+ TAI G +G GK++L+ I GL +P+ G ++L
Sbjct: 2 LELNFKQQLGDLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGR- 60
Query: 488 VLPNYFEQNQAEALDLDK----------------TV---LETVAEAAEDWRIDDIKGLLG 528
VL F+ + L +K V L + + D I LLG
Sbjct: 61 VL---FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLG 117
Query: 529 RCNFKADMLDRKVSLLSGGEK 549
+LDR LSGGEK
Sbjct: 118 ----IEPLLDRYPGSLSGGEK 134
|
Length = 352 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 44/221 (19%), Positives = 98/221 (44%), Gaps = 23/221 (10%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+++EN++ + +LK+V ++ K L+G +G GK+T +R +
Sbjct: 4 IEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLN------------- 50
Query: 158 KSNMKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216
+ N I E + + + + + + ++ ++ +S D++ R+
Sbjct: 51 RMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRI 110
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
E D + + ++L K + L E+ D D+ S G Q R+ + + +
Sbjct: 111 HGEDD--EDFIEERVEESL--KAAALWDEV---KDKLDKSALGLSGGQQQRLCIARTIAV 163
Query: 277 DPDLLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHD 315
P+++L+DEP + LD + +E + K+D +VI++H+
Sbjct: 164 SPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHN 204
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.002
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 434 YEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
Y D+ NL ++RG A+IGP+GCGK+T L+ I
Sbjct: 14 YGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAI 50
|
Length = 252 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (92), Expect = 0.002
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 254 DRLVA---SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDTIEWLEGYLG-KQDVP 308
DRL S S G Q R+ + + L +PD+LL+DEPT+ LD + T + E L K+
Sbjct: 147 DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 309 MVIISHD 315
+VI++H+
Sbjct: 207 IVIVTHN 213
|
Length = 259 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 58/238 (24%), Positives = 108/238 (45%), Gaps = 43/238 (18%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ 168
G VL+++++ + G++VGL+G G+GK+T L ++ + +++I
Sbjct: 16 GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFL--------RLLNTEGDIQID---- 63
Query: 169 EFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
VS + +++ AF ++ +G + ++D G+ DE +
Sbjct: 64 --GVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRK----------NLDPYGKWSDE--EIW 109
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
+ A+ V L ++ + + +L F DG ++ S G + M L + +L +LLLD
Sbjct: 110 KVAEEVGLKSV---IEQFPGQLDFVLVDGGCVL---SHGHKQLMCLARSVLSKAKILLLD 163
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVP--MVIISHDR--AFLDQLCTKIVETEMGVSRTYE 338
EP+ HLD T + + L KQ VI+S R A L+ C + + E R Y+
Sbjct: 164 EPSAHLDPITYQVIRKTL-KQAFADCTVILSEHRIEAMLE--CQRFLVIEENKVRQYD 218
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 24/59 (40%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 415 PERGR---SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
PER + G+ V KN Y + + N I TAIIGP+GCGKST L+ I
Sbjct: 27 PERKKVSGGGKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAI 85
|
Length = 286 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.002
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 31/206 (15%)
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEF 170
VL+ + + GEKVG+VG GAGK++ + E G +I N+ KI F
Sbjct: 1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRF 1360
Query: 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230
++++ ++ + +G L ++D + DE A+
Sbjct: 1361 KITIIP----------QDPVLFSGSLRM----------NLDPFSQYSDE-----EVWWAL 1395
Query: 231 NLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
L L VS L +L +G + S G + + L + LL+ +L+LDE T +
Sbjct: 1396 ELAHLKTFVSALPDKLDHECAEGGE---NLSVGQRQLVCLARALLRKTKILVLDEATAAV 1452
Query: 291 DLDTIEWLEGYLGKQ--DVPMVIISH 314
DL+T ++ + Q D ++ I+H
Sbjct: 1453 DLETDNLIQSTIRTQFEDCTVLTIAH 1478
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.002
Identities = 32/103 (31%), Positives = 52/103 (50%), Gaps = 11/103 (10%)
Query: 392 LERLQE--EEQIEKPFQRKQMK--IRFPERGRSGRSVVTIKNLEFGYEDRL--LFNRANL 445
+ERL+E E + E P+Q ++ +P RGR V +N Y + L + N+
Sbjct: 1253 VERLKEYSETEKEAPWQIQETAPPSGWPPRGR-----VEFRNYCLRYREDLDLVLRHINV 1307
Query: 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
TI GEK I+G G GKS+L + + + GE+++ N+
Sbjct: 1308 TIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNI 1350
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 47/235 (20%), Positives = 100/235 (42%), Gaps = 51/235 (21%)
Query: 76 EFENKKYSNKQSNTGASSISSGVKLENI-SKSYKGVTVLKDVTWEVKKGEKVGLVGVNGA 134
E +N+ ++ + N + + ++ N+ S+ K V +D+++ V +GE +G G+ G+
Sbjct: 245 ELQNR-FNAMKENVSNLAHETVFEVRNVTSRDRKKV---RDISFSVCRGEILGFAGLVGS 300
Query: 135 GKTTQLRIIAGQEEPDSGNV------IKAKSNMK-----IAFLSQEFEVSMSRTVREE-F 182
G+T + + G ++ G + I +S + +A++++ SR R+ F
Sbjct: 301 GRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITE------SR--RDNGF 352
Query: 183 MSAF--KEEMEIAGKLERVQ-KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239
F + M I+ L+ K ++D ++ +LL K +VN +
Sbjct: 353 FPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQN------ 406
Query: 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
+ S G Q ++ + K L P++++ DEPT +D+
Sbjct: 407 -----------------ITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGA 444
|
Length = 510 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ ++ GE + G G G+S L+KL+ G + G+V L
Sbjct: 272 ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYL 312
|
Length = 501 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 51/225 (22%), Positives = 88/225 (39%), Gaps = 61/225 (27%)
Query: 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIIS 313
S G + R+ + LL P+LL+ DEPT LD L + L+ L + ++ I+
Sbjct: 158 SGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELN---MGLLFIT 214
Query: 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLI 373
H+ + + +L ++ + G R E N + + Y T+ L+
Sbjct: 215 HNLSIVRKLADRVAVMQNG--RCVEQNRAATLFSAPT---HPY------------TQKLL 257
Query: 374 NRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV----TIKN 429
N +E + + E +Q+++ FP R + V +KN
Sbjct: 258 N-------------SEPSGDPVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKN 304
Query: 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST----LLKLI 470
+ F T+ GE ++G +G GKST LL+LI
Sbjct: 305 ISF-------------TLRPGETLGLVGESGSGKSTTGLALLRLI 336
|
Length = 529 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 26/67 (38%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 254 DRL---VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-LDT--IEWLEGYLGKQDV 307
DRL S G Q R+ + + L P++LL+DEPT+ LD + T IE L L K+
Sbjct: 141 DRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL-KKKY 199
Query: 308 PMVIISH 314
+VI++H
Sbjct: 200 TIVIVTH 206
|
Length = 253 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 17/105 (16%)
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLM-----PELGFTADDGDRLVASFSSGWQMRMSLG 271
LD F R A L T+ + +L PEL +A S G Q + L
Sbjct: 367 LDRFTGGSRIDDAAELKTILESIQRLKVKTASPELA---------IARLSGGNQQKAVLA 417
Query: 272 KILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIIS 313
K LL +P +L+LDEPT +D+ I L L +Q V +++IS
Sbjct: 418 KCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462
|
Length = 506 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 254 DRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQDV 307
DRL + S G Q R+ + + + +P++LLLDEPT+ LD IE L L K
Sbjct: 160 DRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITEL-KSKY 218
Query: 308 PMVIISH 314
+VI++H
Sbjct: 219 TIVIVTH 225
|
Length = 272 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 26/86 (30%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 234 TLDAKVSKLMPELGFTADDGDRLVAS---FSSGWQMRMSLGKILLQDPDLLLLDEPTNHL 290
LD V K + + DRL S S G Q R+ + ++L P ++LLDEPT+ L
Sbjct: 120 VLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSAL 179
Query: 291 DLDTIEWLEG--YLGKQDVPMVIISH 314
D + +E K D M++++
Sbjct: 180 DPISAGKIEETLLGLKDDYTMLLVTR 205
|
Length = 252 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.003
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL--GKQDVPMVIISHD 315
S S G Q R+ + ++L PD++LLDEPT+ LD + +E L + +++++H
Sbjct: 148 SLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHS 206
|
Length = 252 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.003
Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 11/111 (9%)
Query: 384 RASSAEKKLERLQEEEQIE-KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLF 440
+AS + K+L E++E +R+ +K P G S +T+ N F + +
Sbjct: 602 QASVSLKRLRIFLSHEELEPDSIERRTIK---PGEGNS----ITVHNATFTWARDLPPTL 654
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEHNVLP 490
N +I G A++G GCGKS+LL ++ ++K G + G +P
Sbjct: 655 NGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVP 705
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 45/218 (20%), Positives = 81/218 (37%), Gaps = 38/218 (17%)
Query: 83 SNKQSNTGASSISSGV-KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLR 141
S QS++ + V ++E + Y G L DV ++ + + +G +G GK+T LR
Sbjct: 5 SRSQSDSATINPDHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLR 64
Query: 142 IIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIA 193
+ G ++ + +I + +V M F + E + A
Sbjct: 65 CFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFA 124
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+ + L+ V+D + +E D L K + L
Sbjct: 125 PRANGYKGNLDELVEDSLRRAAIWEEVK-----------DKLKEKGTAL----------- 162
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G Q R+ + + + PD+LL+DEP + LD
Sbjct: 163 -------SGGQQQRLCIARAIAMKPDVLLMDEPCSALD 193
|
Length = 274 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.003
Identities = 57/215 (26%), Positives = 95/215 (44%), Gaps = 54/215 (25%)
Query: 95 SSG-VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151
SSG +K E++ Y+ VL +++E+ EKVG+VG GAGK++ L + E +
Sbjct: 1234 SSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 152 GNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEF-MSAFKE--EMEIAGKLERV 199
G ++ ++ K+ + + V S TVR F + F E + ++ LER
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVR--FNLDPFNEHNDADLWESLERA 1351
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
D+++R + LDA+VS E G +
Sbjct: 1352 HLK------------------DVIRRNSLG-----LDAEVS----EAG----------EN 1374
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
FS G + +SL + LL+ +L+LDE T +D+ T
Sbjct: 1375 FSVGQRQLLSLARALLRRSKILVLDEATAAVDVRT 1409
|
Length = 1622 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y + N I G+ A++G +G GKST+ L+ GE+L
Sbjct: 342 IEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEIL 401
Query: 483 LGEHNV 488
L H++
Sbjct: 402 LDGHDL 407
|
Length = 582 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.003
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLI 470
+L I TA IGP+GCGKST L+ +
Sbjct: 39 DLDIPEKTVTAFIGPSGCGKSTFLRCL 65
|
Length = 267 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.4 bits (92), Expect = 0.003
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468
G + +++++L+ Y D ++ I TA+IGP+GCGKST L+
Sbjct: 42 GDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLR 89
|
Length = 305 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.004
Identities = 16/43 (37%), Positives = 24/43 (55%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
+ NL + A++G NG GKSTLLK + G+ + G +L
Sbjct: 15 DNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILF 57
|
Length = 491 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.004
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+S+ L+ +P LL LDEPT+ LD
Sbjct: 111 GLSGGERKRVSIALELVSNPSLLFLDEPTSGLD 143
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
SK ++ D + + + G +G+GKTT +R+IAG PD G +
Sbjct: 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEI 54
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.1 bits (91), Expect = 0.004
Identities = 19/64 (29%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311
++ S G Q R+ + + L +P+++LLDEPT+ LD + +E L + ++ +VI
Sbjct: 141 NKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVI 200
Query: 312 ISHD 315
++H+
Sbjct: 201 VTHN 204
|
Length = 250 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 39.0 bits (90), Expect = 0.004
Identities = 13/21 (61%), Positives = 14/21 (66%)
Query: 453 TAIIGPNGCGKSTLLKLIMGL 473
IIGPNG GKS LLK + L
Sbjct: 2 NVIIGPNGSGKSNLLKALALL 22
|
Length = 256 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 555 | |||
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.97 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.97 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.97 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.96 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.96 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.96 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.95 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.95 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.95 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.95 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.95 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.95 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.94 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.94 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.94 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.94 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.94 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.94 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.94 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.94 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.94 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.93 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.93 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.93 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.92 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.92 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.92 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.92 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.92 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.92 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.91 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.91 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.91 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.91 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.91 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.91 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.91 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.91 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.91 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.91 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.91 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.91 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.91 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.91 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.91 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.91 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.9 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.9 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.9 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.9 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.9 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.9 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.9 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.9 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.9 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.9 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.9 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.9 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.9 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.9 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.9 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.9 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.9 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.9 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.9 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.9 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.9 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.9 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.9 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.9 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.9 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.9 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.9 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.9 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.9 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.9 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.9 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.9 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.9 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.9 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.9 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.9 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.9 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.9 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.9 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.89 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.89 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.89 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.89 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.89 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.89 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.89 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.89 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.89 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.89 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.89 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.89 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.89 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.89 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.89 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.89 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.89 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.89 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.89 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.89 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.89 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.89 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.89 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.89 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.89 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.89 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.89 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.89 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.89 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.89 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.89 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.89 |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-86 Score=714.02 Aligned_cols=446 Identities=41% Similarity=0.679 Sum_probs=388.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
.+|+++||+++|+++++|+|+||+|.+|+++||||+||||||||||+|+|.+.|++|+|...+ +.+|+|++|++.....
T Consensus 2 ~~i~~~~ls~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~-~~~v~~l~Q~~~~~~~ 80 (530)
T COG0488 2 SMITLENLSLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK-GLRVGYLSQEPPLDPE 80 (530)
T ss_pred ceEEEeeeEEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC-CceEEEeCCCCCcCCC
Confidence 468999999999999999999999999999999999999999999999999999999999874 4789999999999888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
.||.+.+...+..........+.+...+... .......+...+..++.|..+.++..+|..+|++.. ++
T Consensus 81 ~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~--~~ 149 (530)
T COG0488 81 KTVLDYVIEGFGELRELLAELEEAYALLADP---------DDELLAELEALLEELDGWTLEARAEEALLGLGFPDE--DR 149 (530)
T ss_pred ccHHHHHHhhhHHHHHHHHHHHHHHHhcccc---------hhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc--cC
Confidence 8999999887766555555555444333211 112334455555667779999999999999999865 89
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
++.+||||||.||+||+||+.+||+|||||||||||.+++.||.++|+++..||||||||++|++.+|++|+.++.|++.
T Consensus 150 ~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~gtviiVSHDR~FLd~V~t~I~~ld~g~l~ 229 (530)
T COG0488 150 PVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPGTVIVVSHDRYFLDNVATHILELDRGKLT 229 (530)
T ss_pred chhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHhhheEEecCCcee
Confidence 99999999999999999999999999999999999999999999999887669999999999999999999999999999
Q ss_pred eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHhhhhcCccc-cccceee
Q 008750 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQ-RKQMKIR 413 (555)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~ 413 (555)
.|.|||+.|++++++..+.+.+.+++++++++++++++++..... .+.++.++.+++++++......++.. ..+..+.
T Consensus 230 ~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~~~~~~~~~~~~ 309 (530)
T COG0488 230 PYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEERPVEEGKPLAFR 309 (530)
T ss_pred EecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcccccccccceee
Confidence 999999999999999999999999999999999999999876543 33467788888888875322233332 3334466
Q ss_pred ccCCC-CCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeE
Q 008750 414 FPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPN 491 (555)
Q Consensus 414 ~~~~~-~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~ 491 (555)
|+... ..++.+++++|+++.|++ +.+++++||.|.+|++|||+||||+|||||||+|+|...|.+|.|.++ ..++++
T Consensus 310 f~~~~~~~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~ig 388 (530)
T COG0488 310 FPPPGKRLGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIG 388 (530)
T ss_pred ccCCcccCCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEE
Confidence 66655 478999999999999966 589999999999999999999999999999999999999999999997 569999
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
||+|+.. .++++.|+.+++....+...+.++|.+|++|+|+++.+.+++..||||||.||.||
T Consensus 389 yf~Q~~~-~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La 451 (530)
T COG0488 389 YFDQHRD-ELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA 451 (530)
T ss_pred EEEehhh-hcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence 9999974 55588899999999887666889999999999999999999999999999999986
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-77 Score=664.96 Aligned_cols=441 Identities=30% Similarity=0.509 Sum_probs=349.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
+|+++||+++|+++++|+||||+|.+|+++||||+||||||||||+|+|+++|++|+|.+++. ..++|++|+... ...
T Consensus 1 ~i~i~nls~~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~-~~i~~~~q~~~~-~~~ 78 (638)
T PRK10636 1 MIVFSSLQIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN-WQLAWVNQETPA-LPQ 78 (638)
T ss_pred CEEEEEEEEEeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEecCCCC-CCC
Confidence 489999999999999999999999999999999999999999999999999999999999864 469999997543 345
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++.+++.............+.. ... ..+. ..+..+.......+.+..+.++..+|..+||.....+++
T Consensus 79 ~~~~~v~~~~~~~~~l~~~~~~----~~~-~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 79 PALEYVIDGDREYRQLEAQLHD----ANE-RNDG-------HAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred CHHHHHHHhhHHHHHHHHHHHH----Hhc-cCCH-------HHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 7766654322111010000000 000 0000 001111111122345667788999999999975567899
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
+.+|||||||||+||+||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSYQGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999989
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-CchhhHHHHHHHHHHHHHhhhhcCccccccceeecc
Q 008750 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG-ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (555)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 415 (555)
|.|+|+.|...++.+...+...+++++++++++++++.++... ..+.++.++.++++++... ..+.......+.|+
T Consensus 227 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~---~~~~~~~~~~~~~~ 303 (638)
T PRK10636 227 YTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELI---APAHVDNPFHFSFR 303 (638)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcc---cccccCCceeEecC
Confidence 9999999999888777788888999999999999999874332 1223334455555554321 11111234456665
Q ss_pred CCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEec
Q 008750 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (555)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q 495 (555)
.+.+.++++|+++|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|.++|++|+|.+++ .+.++|++|
T Consensus 304 ~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q 382 (638)
T PRK10636 304 APESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQ 382 (638)
T ss_pred CCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecC
Confidence 5555678899999999999988899999999999999999999999999999999999999999999963 467899999
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++...++...|+.+++....+......++.+|+.|+|..+..++++..|||||||||+||
T Consensus 383 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La 442 (638)
T PRK10636 383 HQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442 (638)
T ss_pred cchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence 754456677889888764333333457889999999987778999999999999999986
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-75 Score=653.56 Aligned_cols=446 Identities=31% Similarity=0.526 Sum_probs=346.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
+|+++||+++|+++++|+||||+|.+|+++||||+||||||||||+|+|+++|++|+|.+++ ...++|++|.+......
T Consensus 3 ~l~i~~ls~~~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~-~~~~~~l~q~~~~~~~~ 81 (635)
T PRK11147 3 LISIHGAWLSFSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQ-DLIVARLQQDPPRNVEG 81 (635)
T ss_pred EEEEeeEEEEeCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCC-CCEEEEeccCCCCCCCC
Confidence 68999999999988999999999999999999999999999999999999999999999986 45689999976544456
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++.+++................+...+.. ....+ .+..+..+.......+.+....++..+++.+||. .+++
T Consensus 82 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~ 153 (635)
T PRK11147 82 TVYDFVAEGIEEQAEYLKRYHDISHLVET-DPSEK----NLNELAKLQEQLDHHNLWQLENRINEVLAQLGLD---PDAA 153 (635)
T ss_pred CHHHHHHHhhHHHHHHHHHHHHHHHHhcc-CchHH----HHHHHHHHHHHHHhcCcccHHHHHHHHHHhCCCC---CCCc
Confidence 78777643321111111111111111100 00000 0111111111122234456678899999999996 3789
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
+.+|||||||||+|||||+.+|+||||||||||||+.++.||.++|++++.|||+||||++++..+||+|++|++|++..
T Consensus 154 ~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 154 LSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQGSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999988
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccC
Q 008750 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPE 416 (555)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~ 416 (555)
|.|+|++|..+++.+.+.+...+++++++++++..++.+...+. ..+..++.+++++++... ...+.......+.++.
T Consensus 234 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 234 YPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKAR-RTRNEGRVRALKALRRER-SERREVMGTAKMQVEE 311 (635)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-hhhHHHHHHHHHHhhhhh-ccccccCCceeEEeCC
Confidence 99999999999888777777788888888888888887622111 111233344444443211 1111112234556655
Q ss_pred CCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecC
Q 008750 417 RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496 (555)
Q Consensus 417 ~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~ 496 (555)
....++.+|+++|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.+ +.++.++|++|+
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~ 390 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQH 390 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCc
Confidence 4556788999999999998888999999999999999999999999999999999999999999999 567789999997
Q ss_pred CccCCCCCCCHHHHHHhhcccC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ ..++++.||.+++....... ....++.+|+.|+|..+..++++..|||||||||+||
T Consensus 391 ~-~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la 452 (635)
T PRK11147 391 R-AELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLA 452 (635)
T ss_pred c-cccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHH
Confidence 5 45788899999997643211 1346889999999987778999999999999999986
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-72 Score=624.10 Aligned_cols=449 Identities=32% Similarity=0.491 Sum_probs=339.0
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
+++|+++||+++|+ ++++|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++ ...||||+|++.++
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~ 82 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-GIKVGYLPQEPQLD 82 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEecCCCCC
Confidence 45799999999998 78899999999999999999999999999999999999999999999874 35799999999887
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+|+...+.........+..+..... .....+...++....+......++.++...++..+++.+|++ ..
T Consensus 83 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~--~~ 157 (556)
T PRK11819 83 PEKTVRENVEEGVAEVKAALDRFNEIYAAYA---EPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCP--PW 157 (556)
T ss_pred CCCcHHHHHHHhhHHHHHHHHHHHHHHHHhc---cCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCC--cc
Confidence 8889999986542110000000000000000 000011112223333444444556667788899999999995 36
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
++++.+|||||||||+|||||+.+|++||||||||+||+.++.++.++|++.+.|||+||||++++..+||+|++|++|+
T Consensus 158 ~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~~tviiisHd~~~~~~~~d~i~~l~~g~ 237 (556)
T PRK11819 158 DAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYPGTVVAVTHDRYFLDNVAGWILELDRGR 237 (556)
T ss_pred cCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEeCCE
Confidence 88999999999999999999999999999999999999999999999998887899999999999999999999999999
Q ss_pred EeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceee
Q 008750 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (555)
Q Consensus 334 ~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 413 (555)
+..|.|+|++|...++.....+...++++++++++..+++++..... .....+..++++++.... .+.......+.
T Consensus 238 i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 313 (556)
T PRK11819 238 GIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKAR-QAKSKARLARYEELLSEE---YQKRNETNEIF 313 (556)
T ss_pred EEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-HHHHHHHHHHHHHhhccc---ccccCCCceee
Confidence 87799999999887765555555556666666666665554421110 111111222222221110 01011112222
Q ss_pred ccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEE
Q 008750 414 FPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493 (555)
Q Consensus 414 ~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~ 493 (555)
++.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ ..+.++|+
T Consensus 314 ~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v 392 (556)
T PRK11819 314 IPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYV 392 (556)
T ss_pred cCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEE
Confidence 33322234678999999999988889999999999999999999999999999999999999999999995 45678999
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ ..++++.||.+++..... ......++.+|..+++..+..++++..|||||||||+||
T Consensus 393 ~q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 457 (556)
T PRK11819 393 DQSR-DALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLA 457 (556)
T ss_pred eCch-hhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 9985 356788899999975431 112345678999999975567999999999999999986
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=620.48 Aligned_cols=448 Identities=31% Similarity=0.530 Sum_probs=333.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.+++. ..|+|++|++.+++..
T Consensus 1 ml~i~~ls~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-~~i~~~~q~~~~~~~~ 79 (530)
T PRK15064 1 MLSTANITMQFGAKPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-ERLGKLRQDQFAFEEF 79 (530)
T ss_pred CEEEEEEEEEeCCcEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-CEEEEEeccCCcCCCC
Confidence 489999999999889999999999999999999999999999999999999999999999864 4699999998887889
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
||.+++..+.............+.........+. .........+..+..+..+.++.++++.+|+.....+++
T Consensus 80 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~ 152 (530)
T PRK15064 80 TVLDTVIMGHTELWEVKQERDRIYALPEMSEEDG-------MKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGL 152 (530)
T ss_pred cHHHHHHHhhHHHHHHHHHHHHHhcccccccchH-------HHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCc
Confidence 9999986432110000000000000000000000 001111111122334455677889999999975444678
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
+.+|||||||||+||+||+.+|+||||||||++||+.++.+|.++|++.+.|||+||||++++.++||+|++|++|++..
T Consensus 153 ~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 153 MSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNERNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred hhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 89999999999999999999999999999999999999999999998889999999999999999999999999999877
Q ss_pred ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHHHHHHhhhhcCccccccceeecc
Q 008750 337 YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFP 415 (555)
Q Consensus 337 ~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~ 415 (555)
+.|+|++|...++........+++++++++++++.++.+..... ....+..+.++++++.... . .+.........++
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~ 310 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEE-V-KPSSRQNPFIRFE 310 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccc-c-CCccccCceeeCC
Confidence 89999999887765555556666677777776666655432111 1111122222232211000 0 0000000111222
Q ss_pred CCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEec
Q 008750 416 ERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQ 495 (555)
Q Consensus 416 ~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q 495 (555)
.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++. ..++|++|
T Consensus 311 ~~~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q 389 (530)
T PRK15064 311 QDKKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQ 389 (530)
T ss_pred CCCCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcc
Confidence 22223467899999999998878999999999999999999999999999999999999999999999863 46899999
Q ss_pred CCccCCCCCCCHHHHHHhhc-ccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++...++...|+.+++.... .......+..+|..+++..+..++++..|||||||||+||
T Consensus 390 ~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la 450 (530)
T PRK15064 390 DHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFG 450 (530)
T ss_pred cccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHH
Confidence 86434666789999986432 1223456889999999965678999999999999999986
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-74 Score=594.15 Aligned_cols=446 Identities=39% Similarity=0.639 Sum_probs=390.8
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
+....+.++|+++.|.+..+++|++|++.+|+++||||+|||||||+|++|+|-..|..-++ .+..+.++...
T Consensus 71 ~~s~dvk~~sls~s~~g~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~-------d~y~ls~e~~p 143 (614)
T KOG0927|consen 71 PISRDVKIESLSLSFHGVELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHI-------DFYLLSREIEP 143 (614)
T ss_pred cccccceeeeeeeccCCceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCccc-------chhhhcccCCC
Confidence 45567999999999999999999999999999999999999999999999999999854333 34455565444
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
....+|...++....+...+....+.+...++. ...++++.++.+...++.+..+.++..+|..+|+...+
T Consensus 144 s~~~av~~v~~~~~~e~~rle~~~E~l~~~~d~---------~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m 214 (614)
T KOG0927|consen 144 SEKQAVQAVVMETDHERKRLEYLAEDLAQACDD---------KEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEM 214 (614)
T ss_pred chHHHHHHHhhhhHHHHHHHHHHHHHHHhhccc---------hhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhH
Confidence 333455555545554444444444444433222 12345667777888899999999999999999999999
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCc-eEEEEecCHHHHHhhcceeEEecC
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDV-PMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~-tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
.++.+.+||||||+|++|||+|..+|++|||||||||||++++.||.++|.++.. ++|++||+.+|++.+|++|+.++.
T Consensus 215 ~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~~lVi~sh~QDfln~vCT~Ii~l~~ 294 (614)
T KOG0927|consen 215 QDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRIILVIVSHSQDFLNGVCTNIIHLDN 294 (614)
T ss_pred HHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCceEEEEecchhhhhhHhhhhheecc
Confidence 9999999999999999999999999999999999999999999999999999888 899999999999999999999999
Q ss_pred CeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC--CchhhHHHHHHHHHHHHHhhhhcCcccccc
Q 008750 332 GVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG--ANSGRASSAEKKLERLQEEEQIEKPFQRKQ 409 (555)
Q Consensus 332 G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~ 409 (555)
++...|.|||++|...+.+....|..+|+++++++...++.+.+.+.+ ...+++.+.++.+++++.....+++...+.
T Consensus 295 kkl~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~ 374 (614)
T KOG0927|consen 295 KKLIYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKV 374 (614)
T ss_pred cceeeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCce
Confidence 999999999999999999999999999999999999999999998876 445678888899999988888888888899
Q ss_pred ceeeccCCCCCCCceEEEEeeeEEcCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 410 MKIRFPERGRSGRSVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 410 ~~~~~~~~~~~~~~~l~~~~l~~~y~~~-~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
+.|.|+..+..+.+++.+.|++|.|++. .++++++|-|..+++||+|||||||||||||+|+|.+.|..|.|..+.+ .
T Consensus 375 l~~~f~~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H-~ 453 (614)
T KOG0927|consen 375 LSFRFPEVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH-N 453 (614)
T ss_pred EEEEcccccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-c
Confidence 9999988777788999999999999865 6999999999999999999999999999999999999999999988754 4
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhccc-CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+.+||.||..+.++.++++.+++....++ +..++++.+|++|||.++....++.+||+|||.||++|
T Consensus 454 ~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 454 KLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFA 521 (614)
T ss_pred cchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHH
Confidence 55699999999999999999999998885 77789999999999999999999999999999999886
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-72 Score=616.96 Aligned_cols=448 Identities=32% Similarity=0.504 Sum_probs=335.3
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.+++ ...|||++|++.+++
T Consensus 3 ~~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~~~i~~v~Q~~~~~~ 81 (552)
T TIGR03719 3 YIYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-GIKVGYLPQEPQLDP 81 (552)
T ss_pred EEEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-CCEEEEEeccCCCCC
Confidence 4699999999997 77899999999999999999999999999999999999999999999875 357999999998878
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+|+..++.........+......... .+.+ ..........+...++.++.++...++.++++.+|++ ..+
T Consensus 82 ~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~ 156 (552)
T TIGR03719 82 TKTVRENVEEGVAEIKDALDRFNEISAKFAE--PDAD-MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCP--PWD 156 (552)
T ss_pred CCcHHHHHHHhhHHHHHHHHHHHHHHHHhcc--Cchh-hHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCC--ccc
Confidence 8999999865432100000000000000000 0000 0001112223334445566667778899999999995 258
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
+++.+|||||||||+|||||+.+|++||||||||+||+.++.+|.++|++.+.|||+||||++++..+||+|++|++|++
T Consensus 157 ~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~~tvIiisHd~~~~~~~~d~v~~l~~g~i 236 (552)
T TIGR03719 157 ADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYPGTVVAVTHDRYFLDNVAGWILELDRGRG 236 (552)
T ss_pred CchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcCeEEEEECCEE
Confidence 88999999999999999999999999999999999999999999999988878999999999999999999999999998
Q ss_pred eeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeec
Q 008750 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRF 414 (555)
Q Consensus 335 ~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 414 (555)
..+.|+|++|...++...+.+...+++.++++.+...++.+..... ..+.....++.+++.... .+......++.+
T Consensus 237 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 312 (552)
T TIGR03719 237 IPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKAR-QAKSKARLARYEELLSQE---FQKRNETAEIYI 312 (552)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHhhhhhc---ccccCCCceeec
Confidence 7899999999987765555555556666666665555554311110 001111112222221110 010111112223
Q ss_pred cCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEe
Q 008750 415 PERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFE 494 (555)
Q Consensus 415 ~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~ 494 (555)
+.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ .++.++|++
T Consensus 313 ~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~ 391 (552)
T TIGR03719 313 PPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVD 391 (552)
T ss_pred CCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEe
Confidence 3222235678999999999988889999999999999999999999999999999999999999999995 456789999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ ..+++..||.+++..... . .....++.+|..+++.....++++..|||||||||+||
T Consensus 392 q~~-~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la 455 (552)
T TIGR03719 392 QSR-DALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLA 455 (552)
T ss_pred CCc-cccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHH
Confidence 985 346678899999976432 1 11334678899999965567999999999999999986
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-70 Score=611.15 Aligned_cols=446 Identities=29% Similarity=0.478 Sum_probs=333.4
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEEcCCCceEEEEecc
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIKAKSNMKIAFLSQE 169 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~~g~~~~ig~v~Q~ 169 (555)
....+|+++||+|+|+++++|+|+||+|.+|+++||||+||||||||||+|+|.. .|++ ..|+|++|+
T Consensus 173 ~~~~~I~i~nls~~y~~~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~---------g~I~~~~Q~ 243 (718)
T PLN03073 173 PAIKDIHMENFSISVGGRDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKN---------CQILHVEQE 243 (718)
T ss_pred CCceeEEEceEEEEeCCCEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCC---------CEEEEEecc
Confidence 3456799999999999888999999999999999999999999999999999974 2333 356788887
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHH---Hh------------hccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA---LE------------SAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~---~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
... ...|+.+.+................+... +. ....+.+ .+..+...+...+...+.|.
T Consensus 244 ~~g-~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~---~~~~r~~~~~~~~~~~~~~~ 319 (718)
T PLN03073 244 VVG-DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKD---AVSQRLEEIYKRLELIDAYT 319 (718)
T ss_pred CCC-CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchH---HHHHHHHHHHHHHHhcCcch
Confidence 542 45577666543221111111100000000 00 0000111 12233444555666677889
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH 314 (555)
.+.++..+|..+||.....++++.+|||||||||+||+||+.+|++|||||||+|||+.++.||.++|++++.|||||||
T Consensus 320 ~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~tviivsH 399 (718)
T PLN03073 320 AEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKWPKTFIVVSH 399 (718)
T ss_pred HHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHcCCEEEEEEC
Confidence 99999999999999766678999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC-chhhHHHHHHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGA-NSGRASSAEKKLE 393 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 393 (555)
|++++..+||+|++|++|++..|.|+|+.|...++.....+...++.++++++++++++.++.... .+..+.++.++++
T Consensus 400 d~~~l~~~~d~i~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~ 479 (718)
T PLN03073 400 AREFLNTVVTDILHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALD 479 (718)
T ss_pred CHHHHHHhCCEEEEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHH
Confidence 999999999999999999998899999999998888888888888888899888888877654221 1112222233333
Q ss_pred HHHHhhhhcCccccccceeeccCCC-CCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 394 RLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 394 ~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
++... ..+.......+.++... ..++++|+++|+++.|++ +.+|+++||+|.+||+++|+|||||||||||++|+
T Consensus 480 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~ 556 (718)
T PLN03073 480 RLGHV---DAVVNDPDYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIS 556 (718)
T ss_pred HHhhh---hccccCCCceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHh
Confidence 33211 11111112233443321 234578999999999964 56999999999999999999999999999999999
Q ss_pred CCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhc
Q 008750 472 GLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVN 551 (555)
Q Consensus 472 G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~R 551 (555)
|+++|++|+|.+++ ...++|++|++...+....++...+....+......++.+|..|++..+..++++..||||||||
T Consensus 557 Gll~p~~G~I~~~~-~~~igyv~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqR 635 (718)
T PLN03073 557 GELQPSSGTVFRSA-KVRMAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSR 635 (718)
T ss_pred CCCCCCCceEEECC-ceeEEEEeccccccCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHH
Confidence 99999999999874 46789999986333333222222222222233456789999999998667899999999999999
Q ss_pred hhcC
Q 008750 552 QTLV 555 (555)
Q Consensus 552 v~La 555 (555)
|+||
T Consensus 636 vaLA 639 (718)
T PLN03073 636 VAFA 639 (718)
T ss_pred HHHH
Confidence 9986
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-67 Score=558.12 Aligned_cols=379 Identities=23% Similarity=0.374 Sum_probs=295.9
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC----ceEEEEcCCC-------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD----SGNVIKAKSN------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~----~G~I~~~g~~------- 160 (555)
++|+++||++.|.. .++++||||+|.+||++||||+|||||||++++|.|++++. +|+|.++|.+
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 47999999999953 25999999999999999999999999999999999999887 8999999864
Q ss_pred -------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 -------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..|+|+||++. +.+-+||.+-+...+.- .....
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~--------------------------------------h~~~~ 125 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL--------------------------------------HGKGS 125 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH--------------------------------------hcccc
Confidence 26999999984 33445665544322110 00112
Q ss_pred cccHHHHHHHHhhhcCCCcccc-CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCC
Q 008750 232 LDTLDAKVSKLMPELGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQD 306 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~-~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~ 306 (555)
..+..+++.++|+.+||++... +++|++|||||||||.||+||+.+|++||+||||++||+.+...+.++|+ +.|
T Consensus 126 ~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g 205 (539)
T COG1123 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELG 205 (539)
T ss_pred HHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcC
Confidence 3456778999999999986554 47999999999999999999999999999999999999999998888774 479
Q ss_pred ceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 008750 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (555)
Q Consensus 307 ~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
+++|+||||+..+.++||||++|++|+++. .|..++.+..- .+.|. +.++
T Consensus 206 ~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE-~G~~~~i~~~p-------~hpYT---------~~Ll------------- 255 (539)
T COG1123 206 MAVLFITHDLGVVAELADRVVVMYKGEIVE-TGPTEEILSNP-------QHPYT---------RGLL------------- 255 (539)
T ss_pred cEEEEEcCCHHHHHHhcCeEEEEECCEEEE-ecCHHHHHhcc-------CCccc---------HHHH-------------
Confidence 999999999999999999999999999754 45544433210 00000 0000
Q ss_pred HHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----------ccceeceEEEEecCCEEEE
Q 008750 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEKTAI 455 (555)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~ll~~vsl~i~~Ge~iaI 455 (555)
.. .......+...... .....++++++++|+++.|.. ..++++|||+|++||++||
T Consensus 256 ------~a------~p~~~~~~~~~~~~-~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lgl 322 (539)
T COG1123 256 ------AA------VPRLGDEKIIRLPR-RGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGL 322 (539)
T ss_pred ------hh------CCCccccccccccc-ccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEE
Confidence 00 00000000000000 001126789999999999972 2479999999999999999
Q ss_pred ECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeEEEecCCccCCCCCCCHHHHHHhhcc---c---
Q 008750 456 IGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNYFEQNQAEALDLDKTVLETVAEAAE---D--- 517 (555)
Q Consensus 456 ~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--- 517 (555)
+|++|||||||.|+|+|+.+|++|.|.+.|.++ .+.+++|||...|+|..||.+.+.+... .
T Consensus 323 VGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~ 402 (539)
T COG1123 323 VGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSG 402 (539)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccch
Confidence 999999999999999999999999999988652 3568899999999999999999987632 1
Q ss_pred -CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 518 -WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 518 -~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
...+.+..+|...+++++.++++|++||||||||++||
T Consensus 403 ~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRvaIA 441 (539)
T COG1123 403 AERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIA 441 (539)
T ss_pred HHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHHHHH
Confidence 11234778899999998899999999999999999986
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-67 Score=583.11 Aligned_cols=400 Identities=18% Similarity=0.304 Sum_probs=297.3
Q ss_pred CCccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----------
Q 008750 94 ISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---------- 159 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~---------- 159 (555)
.+++|+++||+++|++ .++|+||||+|.+||++||||+||||||||+++|+|+++|++|+|.++|.
T Consensus 9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~ 88 (623)
T PRK10261 9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVI 88 (623)
T ss_pred CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccc
Confidence 4567999999999962 47999999999999999999999999999999999999999999998762
Q ss_pred --------------CceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 008750 160 --------------NMKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (555)
Q Consensus 160 --------------~~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (555)
...||||+|++ .+++.+||.+|+...... .
T Consensus 89 ~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~---------------~------------------- 134 (623)
T PRK10261 89 ELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL---------------H------------------- 134 (623)
T ss_pred ccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHH---------------h-------------------
Confidence 02599999998 466778999998643210 0
Q ss_pred HHHHHhcCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH
Q 008750 224 QRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY 301 (555)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~ 301 (555)
.....++...++.++++.+||+. ...++++.+|||||||||+||+||+.+|+||||||||++||+.++..+.++
T Consensus 135 ----~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~l 210 (623)
T PRK10261 135 ----QGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQL 210 (623)
T ss_pred ----cCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHH
Confidence 00112234567888999999963 356899999999999999999999999999999999999999998888887
Q ss_pred HcC----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 008750 302 LGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLG 377 (555)
Q Consensus 302 l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (555)
+++ .|.|||+||||++++.++||||++|++|+++ ..|++.++..... ..|.. . +...+....
T Consensus 211 l~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i~-~~g~~~~~~~~~~-------~~~~~---~---l~~~~~~~~ 276 (623)
T PRK10261 211 IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAV-ETGSVEQIFHAPQ-------HPYTR---A---LLAAVPQLG 276 (623)
T ss_pred HHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCeec-ccCCHHHhhcCCC-------Chhhh---h---hhhccCccc
Confidence 642 4899999999999999999999999999975 5788877643110 00000 0 000000000
Q ss_pred cCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----------ccceeceEEE
Q 008750 378 AGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLT 446 (555)
Q Consensus 378 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~ll~~vsl~ 446 (555)
... ++.. ....+... ...+..... ..++.....++++|+++|+++.|+. ..+|+++||+
T Consensus 277 ~~~--~~~~--~~~~~~~~----~~~~~~~~~--~~~~~~~~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~ 346 (623)
T PRK10261 277 AMK--GLDY--PRRFPLIS----LEHPAKQEP--PIEQDTVVDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFD 346 (623)
T ss_pred ccc--cccC--Cccccccc----cccccccCc--ccccccccCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeE
Confidence 000 0000 00000000 000000000 0000111124578999999999961 3689999999
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eeEEEecCCccCCCCCCCHHHHHHh
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAE 513 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (555)
|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|++...+++..||.+++..
T Consensus 347 i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~ 426 (623)
T PRK10261 347 LWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIME 426 (623)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999987543 3689999875568888999999875
Q ss_pred hcc--cC-----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 514 AAE--DW-----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 514 ~~~--~~-----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
... .. ....+..+|..+++..+..+++++.|||||||||+||
T Consensus 427 ~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iA 475 (623)
T PRK10261 427 PLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIA 475 (623)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 321 11 1245778999999976678999999999999999986
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-67 Score=572.60 Aligned_cols=377 Identities=21% Similarity=0.340 Sum_probs=292.2
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++|++++|+++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+
T Consensus 4 ~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 4 PYISMAGIGKSFGPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred ceEEEeeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 56999999999998889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+......... .... ......+...++.++++
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~-----------~~~~---------------------~~~~~~~~~~~~~~~l~ 131 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKK-----------VCGV---------------------NIIDWREMRVRAAMMLL 131 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccc-----------cccc---------------------cccCHHHHHHHHHHHHH
Confidence 999999888889999998532100000 0000 00001123456788899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++..
T Consensus 132 ~~gl~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~ 210 (510)
T PRK09700 132 RVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRR 210 (510)
T ss_pred HcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 46789999999999999999999999999999999999999999999988874 358999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||+|++|++|++ .+.|+++++.... .+..+.. .... .. .
T Consensus 211 ~~d~v~~l~~G~i-~~~g~~~~~~~~~-----------------------~~~~~~~-~~~~---------~~------~ 250 (510)
T PRK09700 211 ICDRYTVMKDGSS-VCSGMVSDVSNDD-----------------------IVRLMVG-RELQ---------NR------F 250 (510)
T ss_pred hCCEEEEEECCEE-eeecchhhCCHHH-----------------------HHHHhcC-CCcc---------cc------c
Confidence 9999999999997 5778776653210 0000000 0000 00 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
...... .....+++.|+++|+++.|. .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|
T Consensus 251 ~~~~~~--------~~~~~~~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I 320 (510)
T PRK09700 251 NAMKEN--------VSNLAHETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI 320 (510)
T ss_pred cccccc--------cccCCCCcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence 000000 00011345799999999764 38999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhcc----------c-----CcHHHHHHHHhhCCCCh
Q 008750 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----------D-----WRIDDIKGLLGRCNFKA 534 (555)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----------~-----~~~~~~~~~L~~~~~~~ 534 (555)
.++|.++ .++|++|++. ..+++..||.+++..... . .....+..+|..+++..
T Consensus 321 ~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 400 (510)
T PRK09700 321 RLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKC 400 (510)
T ss_pred EECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCC
Confidence 9987543 3689999742 356778999999864311 0 01134678999999964
Q ss_pred hhhccccCCCChhHHhchhcC
Q 008750 535 DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 535 ~~~~~~~~~LSGGek~Rv~La 555 (555)
+..++++..|||||||||+||
T Consensus 401 ~~~~~~~~~LSgGq~qrv~lA 421 (510)
T PRK09700 401 HSVNQNITELSGGNQQKVLIS 421 (510)
T ss_pred CCccCccccCChHHHHHHHHH
Confidence 678999999999999999986
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-66 Score=570.45 Aligned_cols=371 Identities=22% Similarity=0.311 Sum_probs=289.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCC-----------ce
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MK 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~-----------~~ 162 (555)
++|+++||+++|+++++|+||||+|.+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+ ..
T Consensus 4 ~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 4 YLLEMKNITKTFGGVKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred ceEEEeeeEEEeCCeEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 469999999999988899999999999999999999999999999999999996 89999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++.+||.+|+....... .. ...+......++.++
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~---------------------~~~~~~~~~~~~~~~ 127 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEIT---------------PG---------------------GIMDYDAMYLRAQKL 127 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhccccc---------------cc---------------------CCcCHHHHHHHHHHH
Confidence 999999998888899999985421000 00 000011223467788
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.+ .|.|||+||||++++
T Consensus 128 l~~~~l~-~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~ 206 (506)
T PRK13549 128 LAQLKLD-INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEV 206 (506)
T ss_pred HHHcCCC-CCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHH
Confidence 9999996 467899999999999999999999999999999999999999999999988743 588999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 399 (555)
..+||+|++|++|+++ +.|+..++.... .+..+.. ..
T Consensus 207 ~~~~d~v~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~-~~------------------ 243 (506)
T PRK13549 207 KAISDTICVIRDGRHI-GTRPAAGMTEDD-----------------------IITMMVG-RE------------------ 243 (506)
T ss_pred HHhcCEEEEEECCEEe-eecccccCCHHH-----------------------HHHHhhC-cC------------------
Confidence 9999999999999874 555544331100 0000000 00
Q ss_pred hhcCccccccceeeccCCCCCCCceEEEEeeeEEcC---CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-
Q 008750 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK- 475 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~---~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~- 475 (555)
.....+. .. ...+++.|+++|+++.|+ ++.+++++||+|++||+++|+||||||||||+|+|+|+++
T Consensus 244 -~~~~~~~-------~~-~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~ 314 (506)
T PRK13549 244 -LTALYPR-------EP-HTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPG 314 (506)
T ss_pred -ccccccc-------cc-cCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCC
Confidence 0000000 00 012356799999999994 4569999999999999999999999999999999999999
Q ss_pred CCceEEEECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhc----c-----cC--cHHHHHHHHhhCCC
Q 008750 476 PRGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAA----E-----DW--RIDDIKGLLGRCNF 532 (555)
Q Consensus 476 p~~G~v~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~----~-----~~--~~~~~~~~L~~~~~ 532 (555)
|++|+|.++|.++ .++|++|++. ..+++..||.+++.... . .. ....+..+|..+++
T Consensus 315 ~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 394 (506)
T PRK13549 315 RWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKV 394 (506)
T ss_pred CCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCc
Confidence 5999999987543 2689999853 24667789999986421 0 00 12357889999999
Q ss_pred ChhhhccccCCCChhHHhchhcC
Q 008750 533 KADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 533 ~~~~~~~~~~~LSGGek~Rv~La 555 (555)
..+..++++.+|||||||||+||
T Consensus 395 ~~~~~~~~~~~LSgG~kqrv~lA 417 (506)
T PRK13549 395 KTASPELAIARLSGGNQQKAVLA 417 (506)
T ss_pred cCCCcccccccCCHHHHHHHHHH
Confidence 64568999999999999999986
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-66 Score=566.91 Aligned_cols=370 Identities=25% Similarity=0.359 Sum_probs=289.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ce
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MK 162 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ 162 (555)
..++|+++||+++|+++++|+|+||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4457999999999998889999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+||++|++.+++..||.+|+...... ....+.++.++
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~-------------------------------------------~~~~~~~~~~~ 124 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPK-------------------------------------------RQASMQKMKQL 124 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhccccc-------------------------------------------chHHHHHHHHH
Confidence 99999999888889999997532100 01123456778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++
T Consensus 125 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~ 203 (510)
T PRK15439 125 LAALGCQ-LDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEI 203 (510)
T ss_pred HHHcCCC-ccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8899996 456899999999999999999999999999999999999999999999988753 589999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 399 (555)
..+||+|++|++|++. +.|+++++...... +.+........ +...
T Consensus 204 ~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~~-----------------------~~~~~~~~~~~-------~~~~---- 248 (510)
T PRK15439 204 RQLADRISVMRDGTIA-LSGKTADLSTDDII-----------------------QAITPAAREKS-------LSAS---- 248 (510)
T ss_pred HHhCCEEEEEECCEEE-EecChHHcCHHHHH-----------------------HHHhCcccccc-------cccc----
Confidence 9999999999999974 67888776432100 00000000000 0000
Q ss_pred hhcCccccccceeeccC---CCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 400 QIEKPFQRKQMKIRFPE---RGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
.. ..+.++. ....++++|+++|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|
T Consensus 249 --~~------~~~~~~~~~~~~~~~~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p 315 (510)
T PRK15439 249 --QK------LWLELPGNRRQQAAGAPVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPA 315 (510)
T ss_pred --cc------ccccccccccccCCCCceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 00 0000110 0112456899999984 259999999999999999999999999999999999999
Q ss_pred CceEEEECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhh----cc---cC--cHHHHHHHHhhCCCChh
Q 008750 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEA----AE---DW--RIDDIKGLLGRCNFKAD 535 (555)
Q Consensus 477 ~~G~v~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~----~~---~~--~~~~~~~~L~~~~~~~~ 535 (555)
++|+|.+++.++ .++|++|++. ..+++..|+.+++... .. .. ....+..+|..+++..+
T Consensus 316 ~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 395 (510)
T PRK15439 316 RGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFN 395 (510)
T ss_pred CCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCC
Confidence 999999987543 3689999742 3466778999998531 00 01 12347789999999645
Q ss_pred hhccccCCCChhHHhchhcC
Q 008750 536 MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 536 ~~~~~~~~LSGGek~Rv~La 555 (555)
..++++..|||||||||+||
T Consensus 396 ~~~~~~~~LSgG~kqrl~la 415 (510)
T PRK15439 396 HAEQAARTLSGGNQQKVLIA 415 (510)
T ss_pred CccCccccCCcHHHHHHHHH
Confidence 68999999999999999986
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-66 Score=567.58 Aligned_cols=371 Identities=20% Similarity=0.344 Sum_probs=286.8
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN------ 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~------ 160 (555)
++|+++||+++|++ +++|+||||+|.+||++||+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~ 83 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASE 83 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCH
Confidence 46999999999963 5799999999999999999999999999999999999986 79999998743
Q ss_pred --------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 008750 161 --------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (555)
Q Consensus 161 --------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
..|||++|++. +.+..|+.+++..... .. ...
T Consensus 84 ~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~---------------~~-----------------------~~~ 125 (529)
T PRK15134 84 QTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLS---------------LH-----------------------RGM 125 (529)
T ss_pred HHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHH---------------Hh-----------------------cCC
Confidence 25999999975 4455688877642110 00 001
Q ss_pred CcccHHHHHHHHhhhcCCCcc--ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----
Q 008750 231 NLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (555)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---- 304 (555)
..+....++.++++.+|+... ..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++
T Consensus 126 ~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~ 205 (529)
T PRK15134 126 RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQE 205 (529)
T ss_pred CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHh
Confidence 112335667888999999642 35889999999999999999999999999999999999999999999988854
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGR 384 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (555)
.|.|||+||||++++..+||||++|++|++. +.|...++...... .+ .+....
T Consensus 206 ~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~~~~~-------~~---------~~~~~~---------- 258 (529)
T PRK15134 206 LNMGLLFITHNLSIVRKLADRVAVMQNGRCV-EQNRAATLFSAPTH-------PY---------TQKLLN---------- 258 (529)
T ss_pred cCCeEEEEcCcHHHHHHhcCEEEEEECCEEE-EeCCHHHHhhCCCC-------HH---------HHHHHH----------
Confidence 4899999999999999999999999999975 45655443221000 00 000000
Q ss_pred HHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcC-----------CccceeceEEEEecCCEE
Q 008750 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE-----------DRLLFNRANLTIERGEKT 453 (555)
Q Consensus 385 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~-----------~~~ll~~vsl~i~~Ge~i 453 (555)
......+. .. ...++++|+++|+++.|+ ++.+|+++||+|++||++
T Consensus 259 -------------~~~~~~~~---------~~-~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~ 315 (529)
T PRK15134 259 -------------SEPSGDPV---------PL-PEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETL 315 (529)
T ss_pred -------------hCcccccc---------cc-CCCCCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEE
Confidence 00000000 00 112456799999999995 356999999999999999
Q ss_pred EEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eeEEEecCCccCCCCCCCHHHHHHhhcc----
Q 008750 454 AIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPNYFEQNQAEALDLDKTVLETVAEAAE---- 516 (555)
Q Consensus 454 aI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---- 516 (555)
+|+||||||||||+++|+|++ |++|+|+++|.++ .++|++|++...+.+..||.+++.....
T Consensus 316 ~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~ 394 (529)
T PRK15134 316 GLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP 394 (529)
T ss_pred EEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc
Confidence 999999999999999999998 4899999987543 2689999863357778899999975321
Q ss_pred cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 517 DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 ~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.. ....+..+|..+++..+..++++..|||||||||+||
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la 437 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIA 437 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHH
Confidence 01 1245778999999975568999999999999999986
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-65 Score=563.32 Aligned_cols=358 Identities=26% Similarity=0.420 Sum_probs=284.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEc------------------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKA------------------ 157 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~------------------ 157 (555)
|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|++ +|++|+|.++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~ 80 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGE 80 (520)
T ss_pred CEEEEEEEEECCeEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccccc
Confidence 57899999998888999999999999999999999999999999999997 7999999986
Q ss_pred -----CC--------------------CceEEEEecc-cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHH
Q 008750 158 -----KS--------------------NMKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMD 211 (555)
Q Consensus 158 -----g~--------------------~~~ig~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (555)
|. ...++|++|+ +.+++..|+.+|+...+..
T Consensus 81 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~----------------------- 137 (520)
T TIGR03269 81 PCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEE----------------------- 137 (520)
T ss_pred ccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHH-----------------------
Confidence 11 1248999997 5666778999988532100
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCC
Q 008750 212 LMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291 (555)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD 291 (555)
......+...++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||
T Consensus 138 ----------------~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD 200 (520)
T TIGR03269 138 ----------------IGYEGKEAVGRAVDLIEMVQLS-HRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLD 200 (520)
T ss_pred ----------------cCCCHHHHHHHHHHHHHHcCCh-hhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCC
Confidence 0011122345678889999996 45688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 008750 292 LDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIE 367 (555)
Q Consensus 292 ~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~ 367 (555)
+.++.++.++|+ +.|.|||+||||++++.++||+|++|++|++. +.|++.++..... ..
T Consensus 201 ~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~~~~~--------------~~-- 263 (520)
T TIGR03269 201 PQTAKLVHNALEEAVKASGISMVLTSHWPEVIEDLSDKAIWLENGEIK-EEGTPDEVVAVFM--------------EG-- 263 (520)
T ss_pred HHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEeCCEEe-eecCHHHHHHHHH--------------hh--
Confidence 999999877764 35899999999999999999999999999874 5788876643100 00
Q ss_pred HHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----ccceec
Q 008750 368 QTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----RLLFNR 442 (555)
Q Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----~~ll~~ 442 (555)
.. .. ..+ .....++++|+++|+++.|++ +.+|++
T Consensus 264 -----~~-------------------~~------~~~-----------~~~~~~~~~l~~~~l~~~~~~~~~~~~~il~~ 302 (520)
T TIGR03269 264 -----VS-------------------EV------EKE-----------CEVEVGEPIIKVRNVSKRYISVDRGVVKAVDN 302 (520)
T ss_pred -----ch-------------------hh------ccc-----------cccCCCCceEEEeccEEEeccCCCCCceEEee
Confidence 00 00 000 000113457999999999952 469999
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC-Cce----------------eeeEEEecCCccCCCCCC
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG-EHN----------------VLPNYFEQNQAEALDLDK 505 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~-~~~----------------~~~~y~~Q~~~~~l~~~~ 505 (555)
+||+|.+||+++|+||||||||||+++|+|+++|++|+|.++ +.. -.++|++|++ .+.+..
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~--~l~~~~ 380 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEY--DLYPHR 380 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCc--ccCCCC
Confidence 999999999999999999999999999999999999999994 311 1368999985 366788
Q ss_pred CHHHHHHhhcc-cC----cHHHHHHHHhhCCCCh----hhhccccCCCChhHHhchhcC
Q 008750 506 TVLETVAEAAE-DW----RIDDIKGLLGRCNFKA----DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 506 tv~e~l~~~~~-~~----~~~~~~~~L~~~~~~~----~~~~~~~~~LSGGek~Rv~La 555 (555)
||.+++..... .. ....+..+|..+++.. +.+++++..|||||||||+||
T Consensus 381 tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~la 439 (520)
T TIGR03269 381 TVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALA 439 (520)
T ss_pred cHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHH
Confidence 99999975321 11 1235778999999964 257899999999999999986
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=563.00 Aligned_cols=367 Identities=24% Similarity=0.369 Sum_probs=285.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..++
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 3 ALLQLKGIDKAFPGVKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred ceEEEeeeEEEeCCeEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999988889999999999999999999999999999999999999999999998743 2499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++.+||.+|+..+.... ... ...+......++.++++
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~---------------~~~--------------------~~~~~~~~~~~~~~~l~ 127 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFV---------------NRF--------------------GRIDWKKMYAEADKLLA 127 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccc---------------ccc--------------------CccCHHHHHHHHHHHHH
Confidence 9999998888899999985421000 000 00011122456778899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||||++++..
T Consensus 128 ~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~ 206 (501)
T PRK10762 128 RLNLR-FSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFE 206 (501)
T ss_pred HcCCC-CCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 99996 45689999999999999999999999999999999999999999999987764 358899999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||+|++|++|++. ..|...++... +....+.. .. .
T Consensus 207 ~~d~i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~-------------------~ 242 (501)
T PRK10762 207 ICDDVTVFRDGQFI-AEREVADLTED-----------------------SLIEMMVG-RK-------------------L 242 (501)
T ss_pred hCCEEEEEeCCEEE-EecCcCcCCHH-----------------------HHHHHhcC-CC-------------------c
Confidence 99999999999874 34543332110 00000000 00 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
..+.+. . + ...++++++++|+++ .+++++||+|.+||+++|+||||||||||+++|+|+.+|++|+|
T Consensus 243 ~~~~~~----~--~--~~~~~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I 309 (501)
T PRK10762 243 EDQYPR----L--D--KAPGEVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV 309 (501)
T ss_pred cccccc----c--c--cCCCCcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence 000000 0 0 012346899999985 36999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhcc----c----C----cHHHHHHHHhhCCCChhhh
Q 008750 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE----D----W----RIDDIKGLLGRCNFKADML 537 (555)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~----~----~----~~~~~~~~L~~~~~~~~~~ 537 (555)
.++|.++ .++|++|++. ..+.+..||.+++..... . . ....+..+|..+++..+..
T Consensus 310 ~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 389 (501)
T PRK10762 310 TLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSM 389 (501)
T ss_pred EECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCc
Confidence 9987543 2689999853 246678899999864210 0 1 1235788999999954567
Q ss_pred ccccCCCChhHHhchhcC
Q 008750 538 DRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 538 ~~~~~~LSGGek~Rv~La 555 (555)
++++..|||||||||+||
T Consensus 390 ~~~~~~LSgGekqrv~lA 407 (501)
T PRK10762 390 EQAIGLLSGGNQQKVAIA 407 (501)
T ss_pred cCchhhCCHHHHHHHHHH
Confidence 999999999999999986
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-65 Score=562.65 Aligned_cols=372 Identities=23% Similarity=0.314 Sum_probs=286.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCC-----------ceE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~-----------~~i 163 (555)
+|+++||+++|+++++|+||||+|.+||++||+|+||||||||+++|+|+++| ++|+|.++|.+ ..+
T Consensus 1 ~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred CEEEEeEEEEeCCeEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 37899999999888899999999999999999999999999999999999987 79999998743 259
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..||.+|+....... .... .........++.+++
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~--------------~~~~---------------------~~~~~~~~~~~~~~l 125 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEIT--------------LPGG---------------------RMAYNAMYLRAKNLL 125 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhcccc--------------cccc---------------------ccCHHHHHHHHHHHH
Confidence 99999998878899999975321000 0000 000112345677889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|+ +.|.|||+||||++++.
T Consensus 126 ~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~ 205 (500)
T TIGR02633 126 RELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVK 205 (500)
T ss_pred HHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHH
Confidence 999996444467899999999999999999999999999999999999999999998864 45889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhh
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQ 400 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 400 (555)
.+||+|++|++|++. +.|...++.... .+..+.. ..
T Consensus 206 ~~~d~i~~l~~G~i~-~~~~~~~~~~~~-----------------------~~~~~~~-~~------------------- 241 (500)
T TIGR02633 206 AVCDTICVIRDGQHV-ATKDMSTMSEDD-----------------------IITMMVG-RE------------------- 241 (500)
T ss_pred HhCCEEEEEeCCeEe-eecCcccCCHHH-----------------------HHHHHhC-cc-------------------
Confidence 999999999999874 334332211000 0000000 00
Q ss_pred hcCccccccceeeccCCCCCCCceEEEEeeeEEc---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-
Q 008750 401 IEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP- 476 (555)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y---~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p- 476 (555)
.....+. .....++.+|+++|+++.| +++.+++++||+|++||+++|+||||||||||+++|+|+++|
T Consensus 242 ~~~~~~~--------~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~ 313 (500)
T TIGR02633 242 ITSLYPH--------EPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGK 313 (500)
T ss_pred ccccccc--------cccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCC
Confidence 0000000 0001234579999999999 345699999999999999999999999999999999999995
Q ss_pred CceEEEECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhc----c---cCc----HHHHHHHHhhCCCC
Q 008750 477 RGGEVLLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAA----E---DWR----IDDIKGLLGRCNFK 533 (555)
Q Consensus 477 ~~G~v~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~----~---~~~----~~~~~~~L~~~~~~ 533 (555)
++|+|.++|.++ .++|++|++. ..+.+..||.+++.... . ... ...+..+|.++++.
T Consensus 314 ~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 393 (500)
T TIGR02633 314 FEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVK 393 (500)
T ss_pred CCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCcc
Confidence 899999987543 2689999852 24667889999986421 0 011 23578899999996
Q ss_pred hhhhccccCCCChhHHhchhcC
Q 008750 534 ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+..++++..|||||||||+||
T Consensus 394 ~~~~~~~~~~LSgGqkqrv~la 415 (500)
T TIGR02633 394 TASPFLPIGRLSGGNQQKAVLA 415 (500)
T ss_pred CCCccCccccCCHHHHHHHHHH
Confidence 5567999999999999999986
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-65 Score=561.06 Aligned_cols=368 Identities=22% Similarity=0.358 Sum_probs=285.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+++|+++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 3 PYLSFDGIGKTFPGVKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred ceEEEeeeEEEECCEEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 46999999999988889999999999999999999999999999999999999999999998743 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+........ .. ....+....++.++++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~-------------~~-----------------------~~~~~~~~~~~~~~l~ 126 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHK-------------GG-----------------------IVNRRLLNYEAREQLE 126 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccc-------------cC-----------------------CCCHHHHHHHHHHHHH
Confidence 99999988888999999854210000 00 0011223456778899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|+ +.|.|||+||||++++..
T Consensus 127 ~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~ 205 (501)
T PRK11288 127 HLGVD-IDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFA 205 (501)
T ss_pred HcCCC-CCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999998875 358999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||+|++|++|++.. . ++.+...... +....+.. .. .
T Consensus 206 ~~d~i~~l~~G~i~~-~--~~~~~~~~~~--------------------~~~~~~~~-~~-------------------~ 242 (501)
T PRK11288 206 LCDAITVFKDGRYVA-T--FDDMAQVDRD--------------------QLVQAMVG-RE-------------------I 242 (501)
T ss_pred hCCEEEEEECCEEEe-e--cCccccCCHH--------------------HHHHHhcC-CC-------------------c
Confidence 999999999998752 2 2211000000 00000000 00 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
.... .. .+...++++++++++++. .+++++||+|++||+++|+||||||||||+++|+|+++|++|.|
T Consensus 243 ~~~~-------~~-~~~~~~~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i 310 (501)
T PRK11288 243 GDIY-------GY-RPRPLGEVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV 310 (501)
T ss_pred cccc-------cc-cccCCCCcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence 0000 00 001123457899999842 48999999999999999999999999999999999999999999
Q ss_pred EECCcee-----------eeEEEecCCc-cCCCCCCCHHHHHHhhcc------c------CcHHHHHHHHhhCCCChhhh
Q 008750 482 LLGEHNV-----------LPNYFEQNQA-EALDLDKTVLETVAEAAE------D------WRIDDIKGLLGRCNFKADML 537 (555)
Q Consensus 482 ~~~~~~~-----------~~~y~~Q~~~-~~l~~~~tv~e~l~~~~~------~------~~~~~~~~~L~~~~~~~~~~ 537 (555)
+++|+++ .++|++|++. ..+.+..|+.+++..... . .....+..+|..+++..+..
T Consensus 311 ~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 390 (501)
T PRK11288 311 YLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSR 390 (501)
T ss_pred EECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCc
Confidence 9987543 2579999853 246677899999864211 0 11235788999999965678
Q ss_pred ccccCCCChhHHhchhcC
Q 008750 538 DRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 538 ~~~~~~LSGGek~Rv~La 555 (555)
++++..|||||||||+||
T Consensus 391 ~~~~~~LSgGq~qrl~la 408 (501)
T PRK11288 391 EQLIMNLSGGNQQKAILG 408 (501)
T ss_pred cCccccCCHHHHHHHHHH
Confidence 999999999999999986
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-65 Score=554.04 Aligned_cols=368 Identities=21% Similarity=0.247 Sum_probs=276.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.++|.+. .++|+
T Consensus 3 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~ 82 (490)
T PRK10938 3 SLQISQGTFRLSDTKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDE 82 (490)
T ss_pred eEEEEeEEEEcCCeeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhcee
Confidence 58999999999888899999999999999999999999999999999999999999999876431 38999
Q ss_pred ecccccCc--------CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 167 SQEFEVSM--------SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 167 ~Q~~~~~~--------~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
+|++...+ ..|+.+++.. ......+
T Consensus 83 ~q~~~~~~~~~~~~~~~~~~~~~~~~-----------------------------------------------~~~~~~~ 115 (490)
T PRK10938 83 WQRNNTDMLSPGEDDTGRTTAEIIQD-----------------------------------------------EVKDPAR 115 (490)
T ss_pred ccCcchhhcccchhhccccHHHhccc-----------------------------------------------chhHHHH
Confidence 99864311 2344443310 0112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecC
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd 315 (555)
+.++++.+|+. ...++++.+|||||||||+||+||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||
T Consensus 116 ~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~ 194 (490)
T PRK10938 116 CEQLAQQFGIT-ALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNR 194 (490)
T ss_pred HHHHHHHcCCH-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 67788899996 457899999999999999999999999999999999999999999999998754 47899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERL 395 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 395 (555)
++++.++||+|++|++|++. +.|+++++..... +.++.... .+..
T Consensus 195 ~~~~~~~~d~v~~l~~G~i~-~~~~~~~~~~~~~-----------------------~~~~~~~~----------~~~~- 239 (490)
T PRK10938 195 FDEIPDFVQFAGVLADCTLA-ETGEREEILQQAL-----------------------VAQLAHSE----------QLEG- 239 (490)
T ss_pred HHHHHhhCCEEEEEECCEEE-EeCCHHHHhcchh-----------------------hhhhhhhh----------ccCc-
Confidence 99999999999999999974 5577655432100 00000000 0000
Q ss_pred HHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 396 QEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
...+..... .. +.....+++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+
T Consensus 240 -----~~~~~~~~~-~~--~~~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~ 311 (490)
T PRK10938 240 -----VQLPEPDEP-SA--RHALPANEPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP 311 (490)
T ss_pred -----cccCccccc-cc--ccccCCCCceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 000000000 00 0001124568999999999987789999999999999999999999999999999999877
Q ss_pred C-CceEEEECCcee-----------eeEEEecCCccCCCCCCCHHHHHHhhcc-------cCc---HHHHHHHHhhCCCC
Q 008750 476 P-RGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFK 533 (555)
Q Consensus 476 p-~~G~v~~~~~~~-----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~~~ 533 (555)
| ++|+|.++|.++ .++|++|++........++.+++..... ... ...+..+|..+++.
T Consensus 312 ~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 391 (490)
T PRK10938 312 QGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGID 391 (490)
T ss_pred cccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCc
Confidence 5 699999987432 2689999752112223566666542210 011 23578899999997
Q ss_pred hhhhccccCCCChhHHhchhcC
Q 008750 534 ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 534 ~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+..++++..|||||||||+||
T Consensus 392 ~~~~~~~~~~LSgGq~qrv~la 413 (490)
T PRK10938 392 KRTADAPFHSLSWGQQRLALIV 413 (490)
T ss_pred hhhccCchhhCCHHHHHHHHHH
Confidence 5468999999999999999986
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-64 Score=548.48 Aligned_cols=365 Identities=20% Similarity=0.306 Sum_probs=279.1
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEEec
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQ 168 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v~Q 168 (555)
++||+++|+++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~~nl~~~~~~~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q 80 (491)
T PRK10982 1 MSNISKSFPGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQ 80 (491)
T ss_pred CCceEEEeCCEEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEec
Confidence 4789999988889999999999999999999999999999999999999999999998853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+....... ... ..+.....+++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~~~--------------~~~----------------------~~~~~~~~~~~~~~l~~~~l 124 (491)
T PRK10982 81 ELNLVLQRSVMDNMWLGRYPT--------------KGM----------------------FVDQDKMYRDTKAIFDELDI 124 (491)
T ss_pred ccccccCCCHHHHhhcccccc--------------ccc----------------------ccCHHHHHHHHHHHHHHcCC
Confidence 998878899999985321000 000 00011123457778889999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++..+||+
T Consensus 125 ~-~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~ 203 (491)
T PRK10982 125 D-IDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDE 203 (491)
T ss_pred C-CCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCE
Confidence 6 456888999999999999999999999999999999999999999999888753 589999999999999999999
Q ss_pred eEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCcc
Q 008750 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPF 405 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 405 (555)
|++|++|++. ..|+..++... +....+.. .. .....
T Consensus 204 i~~l~~G~i~-~~~~~~~~~~~-----------------------~~~~~~~~-~~-------------------~~~~~ 239 (491)
T PRK10982 204 ITILRDGQWI-ATQPLAGLTMD-----------------------KIIAMMVG-RS-------------------LTQRF 239 (491)
T ss_pred EEEEECCEEE-eecChhhCCHH-----------------------HHHHHHhC-CC-------------------ccccc
Confidence 9999999874 44443322100 00000000 00 00000
Q ss_pred ccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
+. +. ...++++|+++|+++.| +.+|+++||+|++||+++|+||||||||||+++|+|+.+|++|.|.++|
T Consensus 240 ~~-------~~-~~~~~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 309 (491)
T PRK10982 240 PD-------KE-NKPGEVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHG 309 (491)
T ss_pred cc-------cc-CCCCCcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECC
Confidence 00 00 11234679999999875 3589999999999999999999999999999999999999999999987
Q ss_pred ceee-----------eEEEecCCc-cCCCCCCCHHHH-----HHhhcc--c-C----cHHHHHHHHhhCCCChhhhcccc
Q 008750 486 HNVL-----------PNYFEQNQA-EALDLDKTVLET-----VAEAAE--D-W----RIDDIKGLLGRCNFKADMLDRKV 541 (555)
Q Consensus 486 ~~~~-----------~~y~~Q~~~-~~l~~~~tv~e~-----l~~~~~--~-~----~~~~~~~~L~~~~~~~~~~~~~~ 541 (555)
.++. ++|++|++. ..+.++.|+.++ +..... . . ....++.++..+++..+..++++
T Consensus 310 ~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 389 (491)
T PRK10982 310 KKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQI 389 (491)
T ss_pred EECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccc
Confidence 5542 578998752 234556666554 332111 1 0 12357889999999655689999
Q ss_pred CCCChhHHhchhcC
Q 008750 542 SLLSGGEKVNQTLV 555 (555)
Q Consensus 542 ~~LSGGek~Rv~La 555 (555)
.+|||||||||+||
T Consensus 390 ~~LSgGq~qrv~la 403 (491)
T PRK10982 390 GSLSGGNQQKVIIG 403 (491)
T ss_pred ccCCcHHHHHHHHH
Confidence 99999999999986
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-65 Score=524.99 Aligned_cols=413 Identities=30% Similarity=0.483 Sum_probs=333.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
...|.+.+++..||++.+|++-++++..|.++||||+||+|||||||+|+. |.|... -++|+..-.+
T Consensus 78 ~~Di~~~~fdLa~G~k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f-------~veqE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGGKILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGF-------HVEQEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeecchhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCcc-------Cchhheeccc
Confidence 456899999999999999999999999999999999999999999999997 444322 1233321100
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc-cHHHHHHHHhhhcCCCcccc
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD-TLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~lgl~~~~~ 253 (555)
..-..+.+ .. |.... .++.+-. .+... ..++.+.++|..+||+++..
T Consensus 145 t~~~~~~l-~~-----------------------D~~~~-dfl~~e~-------~l~~~~~l~ei~~~~L~glGFt~emq 192 (582)
T KOG0062|consen 145 TEALQSVL-ES-----------------------DTERL-DFLAEEK-------ELLAGLTLEEIYDKILAGLGFTPEMQ 192 (582)
T ss_pred hHHHhhhh-hc-----------------------cHHHH-HHHHhhh-------hhhccchHHHHHHHHHHhCCCCHHHH
Confidence 00000000 00 00000 0000000 00001 22333455899999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
.+++.+||||||+|++|||||..+|||||||||||+||+.++.||.++|+.++.|+|+||||+.|++.+|+.||.+++-+
T Consensus 193 ~~pt~slSGGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 193 LQPTKSLSGGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWKITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred hccccccCcchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCCceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceee
Q 008750 334 SRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIR 413 (555)
Q Consensus 334 ~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~ 413 (555)
+..|.|||++|...+.+....++..|+.+.+..+.++..+.++.- ++.++.+.+.|+.-+...+....+.......+.
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrY--na~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~ 350 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRY--NAARASSVQSRIKMLGKLPALKSTLIEVLIGFL 350 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhcc--CcccchhHHHHHHHhccCCCCCccceeccccee
Confidence 999999999999999999999999999998888889999998763 333444555566555543333334444455677
Q ss_pred ccCC-CCCCCceEEEEeeeEEcCCc--cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeee
Q 008750 414 FPER-GRSGRSVVTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP 490 (555)
Q Consensus 414 ~~~~-~~~~~~~l~~~~l~~~y~~~--~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~ 490 (555)
||+. .....+++++.+|+|.|+.. .++.++++++..-++++++|+||+||||++|++.|.+.|..|.+.+. .++++
T Consensus 351 fP~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~-~r~ri 429 (582)
T KOG0062|consen 351 FPTEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH-PRLRI 429 (582)
T ss_pred cCCCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-cccee
Confidence 7773 34567899999999999643 48999999999999999999999999999999999999999998887 57899
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+||.|+..+.++...+..+.++...+...++++|..|+.||++++.+.+++..||||||.||+||
T Consensus 430 ~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA 494 (582)
T KOG0062|consen 430 KYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFA 494 (582)
T ss_pred cchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHH
Confidence 99999988888877888888888888888999999999999999999999999999999999987
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=486.52 Aligned_cols=437 Identities=30% Similarity=0.544 Sum_probs=342.2
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
..|.++|.+.+-.++.+|.|.||.|-.|.++|||||||-||||||+.|+.---. + ..++.+-|+.|+... ..
T Consensus 263 ~DIKiEnF~ISA~Gk~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~Rala------I-PpnIDvLlCEQEvva-d~ 334 (807)
T KOG0066|consen 263 MDIKIENFDISAQGKLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALA------I-PPNIDVLLCEQEVVA-DS 334 (807)
T ss_pred ccceeeeeeeecccceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhcc------C-CCCCceEeeeeeeee-cC
Confidence 458999999999899999999999999999999999999999999999864211 0 123456777887654 33
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
.+..+.++.+....+......+.+...++... .... +++.........++.+..+.+++.+|..+||+.++.+|
T Consensus 335 t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd--~taa----Erl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ~r 408 (807)
T KOG0066|consen 335 TSAIDTVLKADKKRLALLEEEAKLMSQIEEGD--TTAA----ERLKEVADELRAIGADSAEARARRILAGLGFSKEMQER 408 (807)
T ss_pred cHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCc--hHHH----HHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHhcC
Confidence 44444444443333333333344444443321 1111 22222333334567788899999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
+...+|||||+||+|||||..+|-+|+|||||||||..+.-||-++|+.+.+|++|||||-.|++.+|+.||.|++-++.
T Consensus 409 Pt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkKTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 409 PTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKKTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred CccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhheeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH-HHHHHHH---------------hh
Q 008750 336 TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK-KLERLQE---------------EE 399 (555)
Q Consensus 336 ~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~~---------------~~ 399 (555)
+|.|||.-|.....+..+.....|+++++.++.++. .+..+.++....+ .+.+-+. ..
T Consensus 489 yYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa------~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapE 562 (807)
T KOG0066|consen 489 YYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKA------EGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPE 562 (807)
T ss_pred hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHhccccccCccccccCHH
Confidence 999999999887777777677778877776654432 1111112211111 1111110 00
Q ss_pred hhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 008750 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~ 478 (555)
...+| ....++|.||.+..-..+++-+.+|+|.|++ +++|..++|-|.--.+|||+||||.||||||++|.|-+.|..
T Consensus 563 LL~Rp-KEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~ 641 (807)
T KOG0066|consen 563 LLQRP-KEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPND 641 (807)
T ss_pred HHhCc-hheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCc
Confidence 11111 2345788998876667889999999999964 689999999999999999999999999999999999999999
Q ss_pred eEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 479 GEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 479 G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+.+-+ +++++|+|+|+..+.|..+.|..+.++..+ ....+++|..|+.||+......-.+..||||||.||+||
T Consensus 642 GE~RKn-hrL~iG~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVala 716 (807)
T KOG0066|consen 642 GELRKN-HRLRIGWFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALA 716 (807)
T ss_pred chhhcc-ceeeeechhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHH
Confidence 998775 789999999998889999999999998775 456789999999999976666778899999999999986
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-60 Score=524.63 Aligned_cols=356 Identities=25% Similarity=0.338 Sum_probs=266.3
Q ss_pred eEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCCC---------
Q 008750 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSN--------- 160 (555)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~g~~--------- 160 (555)
+++++|+++ .+|++++ .+++|+++||||+||||||||+|+|+|+++|++|+|. ++|.+
T Consensus 78 ~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~ 156 (590)
T PRK13409 78 EPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLY 156 (590)
T ss_pred CceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHh
Confidence 489999864 6999999 9999999999999999999999999999999999997 66532
Q ss_pred ---ceEEEEecccccCc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 ---MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.++++.+|.....+ ..||.+++.. .+
T Consensus 157 ~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~------------------------------------------------~~ 188 (590)
T PRK13409 157 NGEIKVVHKPQYVDLIPKVFKGKVRELLKK------------------------------------------------VD 188 (590)
T ss_pred ccCcceeecccchhhhhhhhcchHHHHHHh------------------------------------------------hh
Confidence 23566666543322 2366555421 01
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVII 312 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIii 312 (555)
...++.++++.+|+. ...++++.+|||||+|||+||+||+.+|++|||||||++||+..+.++.+++++. +.|||+|
T Consensus 189 ~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIiv 267 (590)
T PRK13409 189 ERGKLDEVVERLGLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVV 267 (590)
T ss_pred HHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEE
Confidence 123567788889996 4578999999999999999999999999999999999999999999999887643 8999999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKL 392 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 392 (555)
|||++++..+||+|++|+++. |.|..+......+. . ...+...+.. .
T Consensus 268 sHd~~~l~~~~D~v~vl~~~~-----g~~g~~~~~~~~~~------------~---i~~~~~~~~~-----~-------- 314 (590)
T PRK13409 268 EHDLAVLDYLADNVHIAYGEP-----GAYGVVSKPKGVRV------------G---INEYLKGYLP-----E-------- 314 (590)
T ss_pred eCCHHHHHHhCCEEEEEeCCc-----cccceecchhHHHH------------h---HHHHHHhcch-----h--------
Confidence 999999999999999997641 22221111110000 0 0001110000 0
Q ss_pred HHHHHhhhhcCccccccceeeccCC--CCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH
Q 008750 393 ERLQEEEQIEKPFQRKQMKIRFPER--GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (555)
Q Consensus 393 ~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L 470 (555)
+... .. + ....+.++.. ...+.++++++|+++.|++. .|+++||+|++||+++|+||||||||||+|+|
T Consensus 315 e~~~----~~-~---~~~~~~~~~~~~~~~~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L 385 (590)
T PRK13409 315 ENMR----IR-P---EPIEFEERPPRDESERETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLL 385 (590)
T ss_pred hhhh----cc-c---cCcceecCCCccccCCceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHH
Confidence 0000 00 0 0011111111 11346789999999999865 58999999999999999999999999999999
Q ss_pred hCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccC-cHHHHHHHHhhCCCChhhhccccCCCChhHH
Q 008750 471 MGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (555)
Q Consensus 471 ~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek 549 (555)
+|+++|++|+|.++ +.++|++|++ .++++.||.+++....... ....+..+|..+++. +..++++.+||||||
T Consensus 386 ~Gl~~p~~G~I~~~---~~i~y~~Q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l~l~-~~~~~~~~~LSGGe~ 459 (590)
T PRK13409 386 AGVLKPDEGEVDPE---LKISYKPQYI--KPDYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE-RLLDKNVKDLSGGEL 459 (590)
T ss_pred hCCCCCCceEEEEe---eeEEEecccc--cCCCCCcHHHHHHHHhhhcChHHHHHHHHHHCCCH-HHHhCCcccCCHHHH
Confidence 99999999999885 5789999985 3567889999997642222 123567899999996 678999999999999
Q ss_pred hchhcC
Q 008750 550 VNQTLV 555 (555)
Q Consensus 550 ~Rv~La 555 (555)
|||+||
T Consensus 460 QRvaiA 465 (590)
T PRK13409 460 QRVAIA 465 (590)
T ss_pred HHHHHH
Confidence 999986
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-60 Score=473.13 Aligned_cols=372 Identities=20% Similarity=0.326 Sum_probs=294.3
Q ss_pred CccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc----
Q 008750 95 SSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~---- 161 (555)
.+.++++|+++.|. ...++++|||+|++||++||||+||||||-....|+|+++. -+|+|.++|.+.
T Consensus 4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~s 83 (534)
T COG4172 4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAAS 83 (534)
T ss_pred CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCC
Confidence 46799999999995 46799999999999999999999999999999999999864 368999998652
Q ss_pred ----------eEEEEecccccC--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Q 008750 162 ----------KIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (555)
Q Consensus 162 ----------~ig~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
+|+++||+|... +-.|+..-+... ......
T Consensus 84 e~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~--------------------------------------l~~Hrg 125 (534)
T COG4172 84 ERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEV--------------------------------------LRLHRG 125 (534)
T ss_pred HHHHhhhcccceEEEecccccccCcHhHHHHHHHHH--------------------------------------HHHHhc
Confidence 699999998543 333443333211 111123
Q ss_pred cCcccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----
Q 008750 230 VNLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---- 303 (555)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---- 303 (555)
+.....++++.++|+.+|++. ...+.+|++|||||||||.||.||+.+|++||.||||.+||+.....+.++|+
T Consensus 126 ~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~ 205 (534)
T COG4172 126 LSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQA 205 (534)
T ss_pred ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHH
Confidence 455667889999999999973 45789999999999999999999999999999999999999998888887764
Q ss_pred CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 008750 304 KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (555)
Q Consensus 304 ~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (555)
+.|+++++||||+..+.++||||+||..|+++. .|...+.+.. .+..|.+ .++
T Consensus 206 ~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE-~~~t~~lF~~-------PqHpYTr---------~Ll---------- 258 (534)
T COG4172 206 ELGMAILFITHDLGIVRKFADRVYVMQHGEIVE-TGTTETLFAA-------PQHPYTR---------KLL---------- 258 (534)
T ss_pred HhCcEEEEEeccHHHHHHhhhhEEEEeccEEee-cCcHHHHhhC-------CCChHHH---------HHH----------
Confidence 579999999999999999999999999999754 3433222211 1111100 000
Q ss_pred hHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCC-----------ccceeceEEEEecCCE
Q 008750 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-----------RLLFNRANLTIERGEK 452 (555)
Q Consensus 384 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-----------~~ll~~vsl~i~~Ge~ 452 (555)
.. .|.-.+ ++....+.++++++++.+.|+- ..+++++||++++|+.
T Consensus 259 ------------~a-----eP~g~~------~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqT 315 (534)
T COG4172 259 ------------AA-----EPSGDP------PPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQT 315 (534)
T ss_pred ------------hc-----CCCCCC------CCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCe
Confidence 00 010000 0112235789999999998852 1368899999999999
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------eEEEecCCccCCCCCCCHHHHHHhhcc---
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------PNYFEQNQAEALDLDKTVLETVAEAAE--- 516 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-------------~~y~~Q~~~~~l~~~~tv~e~l~~~~~--- 516 (555)
++|+|.+|||||||-.+|.+++++. |.|+|.|.++. ...++|+|...|+|..||.+.+.+...
T Consensus 316 lGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~ 394 (534)
T COG4172 316 LGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE 394 (534)
T ss_pred EEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC
Confidence 9999999999999999999999987 99999988662 347899999999999999999987632
Q ss_pred -----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 517 -----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 -----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
....+.+...|...|+++...+|.|++.|||||||++||
T Consensus 395 ~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIA 438 (534)
T COG4172 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA 438 (534)
T ss_pred CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHH
Confidence 122356889999999999999999999999999999986
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-58 Score=476.91 Aligned_cols=372 Identities=25% Similarity=0.366 Sum_probs=300.3
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
+.++++|++|.|++..+++||||+|++||++||+|+||+|||||+++|.|+|+|++|+|.++|+. ..||
T Consensus 3 ~~l~~~~itK~f~~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIG 82 (501)
T COG3845 3 PALEMRGITKRFPGVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIG 82 (501)
T ss_pred ceEEEeccEEEcCCEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCc
Confidence 45899999999999999999999999999999999999999999999999999999999999964 3699
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
+|+|++.+.+++||.||+..+.... ....++.....+++.++.+
T Consensus 83 MVhQHF~Lv~~lTV~ENiiLg~e~~------------------------------------~~~~~~~~~~~~~i~~l~~ 126 (501)
T COG3845 83 MVHQHFMLVPTLTVAENIILGLEPS------------------------------------KGGLIDRRQARARIKELSE 126 (501)
T ss_pred EEeeccccccccchhhhhhhcCccc------------------------------------cccccCHHHHHHHHHHHHH
Confidence 9999999999999999997543210 0012334456788999999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+||+ -..++++.+||-||||||.|-+||+.+|++|||||||+.|-|...+.|.+.|+ +.|+|||+|||.+.++.+
T Consensus 127 ~yGl~-vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~ 205 (501)
T COG3845 127 RYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMA 205 (501)
T ss_pred HhCCC-CCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHH
Confidence 99997 45689999999999999999999999999999999999999999999988764 579999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhh
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQI 401 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 401 (555)
+||||.+|+.|+++ |.++.... . ..++..+.|.+.. +
T Consensus 206 iaDrvTVLR~Gkvv---gt~~~~~~--------------~------t~~ela~lMvG~~--------------------v 242 (501)
T COG3845 206 IADRVTVLRRGKVV---GTVDPVAE--------------T------TEEELAELMVGRE--------------------V 242 (501)
T ss_pred hhCeeEEEeCCeEE---eeecCCCC--------------C------CHHHHHHHhcCCc--------------------c
Confidence 99999999999853 32221000 0 0011111111100 0
Q ss_pred cCccccccceeeccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008750 402 EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (555)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~ 480 (555)
..+. .. .+..+++++++++++++.-.. ...++++||+|+.||+++|.|-.|.|.+.|+.+|+|+.+|.+|.
T Consensus 243 ~~~~-------~~-~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~ 314 (501)
T COG3845 243 VLRV-------VK-PPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314 (501)
T ss_pred cccc-------cc-CCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCce
Confidence 0000 00 123457899999999987543 36799999999999999999999999999999999999999999
Q ss_pred EEECCcee------------eeEEEecCC-ccCCCCCCCHHHHHHhhccc-------------CcHHHHHHHHhhCCCCh
Q 008750 481 VLLGEHNV------------LPNYFEQNQ-AEALDLDKTVLETVAEAAED-------------WRIDDIKGLLGRCNFKA 534 (555)
Q Consensus 481 v~~~~~~~------------~~~y~~Q~~-~~~l~~~~tv~e~l~~~~~~-------------~~~~~~~~~L~~~~~~~ 534 (555)
|.++|+++ -.+|+|.+. ...+-++.|+.+|+...... .....++.+...|++..
T Consensus 315 I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~ 394 (501)
T COG3845 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRA 394 (501)
T ss_pred EEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccC
Confidence 99999875 146888764 45677999999998654221 11235778999999987
Q ss_pred hhhccccCCCChhHHhchhcC
Q 008750 535 DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 535 ~~~~~~~~~LSGGek~Rv~La 555 (555)
.....++.+||||++||+.+|
T Consensus 395 ~~~~~~a~~LSGGNqQK~Ila 415 (501)
T COG3845 395 PSPDAPARSLSGGNQQKLILA 415 (501)
T ss_pred CCCCcchhhcCCcceehhhhh
Confidence 788899999999999999876
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-58 Score=484.60 Aligned_cols=370 Identities=26% Similarity=0.386 Sum_probs=296.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.+.++++||+|+|++.++|+||||+|.+||++||+|+||||||||+|+|+|.++|++|+|.++|.. ..|
T Consensus 6 ~~ll~~~~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI 85 (500)
T COG1129 6 PPLLELRGISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGI 85 (500)
T ss_pred cceeeeecceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCc
Confidence 457899999999999999999999999999999999999999999999999999999999999864 369
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+.|+|+..+.+++||.||+....... .....++...+..++.++|
T Consensus 86 ~~V~QEl~L~p~LsVaeNifLgre~~-----------------------------------~~~g~id~~~m~~~A~~~l 130 (500)
T COG1129 86 ATVHQELSLVPNLSVAENIFLGREPT-----------------------------------RRFGLIDRKAMRRRARELL 130 (500)
T ss_pred EEEeechhccCCccHHHHhhcccccc-----------------------------------cCCCccCHHHHHHHHHHHH
Confidence 99999999999999999986432100 0011234556778899999
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+..+ .+.++.+||+||||.|+|||||..+++||||||||++|+....+.|.+.+ ++.|.+||+|||+++++.
T Consensus 131 ~~lg~~~~-~~~~v~~LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~ 209 (500)
T COG1129 131 ARLGLDID-PDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVF 209 (500)
T ss_pred HHcCCCCC-hhhhhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHH
Confidence 99999733 78999999999999999999999999999999999999999888888765 568999999999999999
Q ss_pred hhcceeEEecCCeEeeccCCh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhh
Q 008750 321 QLCTKIVETEMGVSRTYEGNY-SQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEE 399 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~ 399 (555)
++||||.||++|+.+- .++. .++- ..+.++.|.+. .+
T Consensus 210 ~i~DritVlRDG~~v~-~~~~~~~~~-----------------------~~~lv~~MvGr-----------~~------- 247 (500)
T COG1129 210 EIADRITVLRDGRVVG-TRPTAAETS-----------------------EDELVRLMVGR-----------EL------- 247 (500)
T ss_pred HhcCEEEEEeCCEEee-ecccccCCC-----------------------HHHHHHHhhCc-----------ch-------
Confidence 9999999999998532 2221 1110 11122222210 00
Q ss_pred hhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 400 QIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
...++. . .....+++++++++++.. ..++++||++++||+++|.|-=|+|+|.|+++|.|..++.+|
T Consensus 248 --~~~~~~-~------~~~~~~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G 314 (500)
T COG1129 248 --EDLFPE-P------PEEGIGEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSG 314 (500)
T ss_pred --hhhccc-c------cccCCCCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc
Confidence 000000 0 001245788999999853 258999999999999999999999999999999999999999
Q ss_pred EEEECCceee-----------eEEEecCC-ccCCCCCCCHHHHHHhhcc-c----------CcHHHHHHHHhhCCCChhh
Q 008750 480 EVLLGEHNVL-----------PNYFEQNQ-AEALDLDKTVLETVAEAAE-D----------WRIDDIKGLLGRCNFKADM 536 (555)
Q Consensus 480 ~v~~~~~~~~-----------~~y~~Q~~-~~~l~~~~tv~e~l~~~~~-~----------~~~~~~~~~L~~~~~~~~~ 536 (555)
+|.++|+++. ++|++-+. .+.+.++.++.+|+..... . .....+..+..++.+....
T Consensus 315 ~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s 394 (500)
T COG1129 315 EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPS 394 (500)
T ss_pred eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCC
Confidence 9999998663 46887653 3568899999999865421 0 1123577889999998888
Q ss_pred hccccCCCChhHHhchhcC
Q 008750 537 LDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 537 ~~~~~~~LSGGek~Rv~La 555 (555)
.++++.+||||+||||.||
T Consensus 395 ~~~~v~~LSGGNQQKVvla 413 (500)
T COG1129 395 PEQPIGTLSGGNQQKVVLA 413 (500)
T ss_pred ccchhhcCCchhhhhHHHH
Confidence 9999999999999999985
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-57 Score=507.34 Aligned_cols=254 Identities=28% Similarity=0.404 Sum_probs=191.8
Q ss_pred hhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc---eeeeeeeEEEECCCEE
Q 008750 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEKV 126 (555)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~---~vL~~vsl~i~~Ge~~ 126 (555)
............|..+...+|+.....+.......... ......+.|+++||+|+|+.+ ++|+|+||.|++|+++
T Consensus 305 gqa~p~l~~f~~a~~aa~~I~~~i~~~~~i~~~~~~~~--~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~v 382 (1228)
T KOG0055|consen 305 GQASPHLSAFAKARAAAYRIFETIDRKPSIDPYSKGGR--VLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTV 382 (1228)
T ss_pred hccccchHHHhccccchHHHHHHhcCCCCCCcccccCC--cccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEE
Confidence 34445556677777777888876544433222110110 112456779999999999865 5999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEI 192 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~ 192 (555)
||||+|||||||++++|.++|.|++|+|.++|.+. +||.|+|+|.+ |..||+||+..+- .+++..
T Consensus 383 alVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~~~lr~~iglV~QePvl-F~~tI~eNI~~G~~dat~~~i~~ 461 (1228)
T KOG0055|consen 383 ALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNLKWLRSQIGLVSQEPVL-FATTIRENIRYGKPDATREEIEE 461 (1228)
T ss_pred EEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcchHHHHhhcCeeeechhh-hcccHHHHHhcCCCcccHHHHHH
Confidence 99999999999999999999999999999999764 59999999955 8999999997654 222222
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHH
Q 008750 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
+.+... ....+..+.+.++- ...++.+ +|||||||||||||
T Consensus 462 a~k~an------------------------------------a~~fi~~lp~g~~T--~vge~g~-qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 462 AAKAAN------------------------------------AHDFILKLPDGYDT--LVGERGV-QLSGGQKQRIAIAR 502 (1228)
T ss_pred HHHHcc------------------------------------HHHHHHhhHHhhcc--cccCCCC-CCChHHHHHHHHHH
Confidence 221111 12223333333322 2234444 69999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeec---------cCCh
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY---------EGNY 341 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~---------~G~y 341 (555)
||+.+|+|||||||||+||+++++.+.+.|.+ .|+|.|+|+|+++.+.. ||+|++|++|++++. .|-|
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G~Y 581 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGGIY 581 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccchH
Confidence 99999999999999999999999999999964 58999999999999987 999999999997542 3556
Q ss_pred HHHHH
Q 008750 342 SQYVL 346 (555)
Q Consensus 342 ~~~~~ 346 (555)
.++..
T Consensus 582 ~~lv~ 586 (1228)
T KOG0055|consen 582 SSLVR 586 (1228)
T ss_pred HHHHH
Confidence 66544
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=410.44 Aligned_cols=211 Identities=29% Similarity=0.483 Sum_probs=187.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+|+||+..+|+||||+|.+||+++||||||||||||||||+|+.+|++|+|.++|.+ .++|
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 36899999999999999999999999999999999999999999999999999999999999842 2589
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
+|||++++|+++||.||++.+.. ....++..+.++++.++|+
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~--------------------------------------~v~~~~k~eA~~~A~~lL~ 122 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPV--------------------------------------KVKKLSKAEAREKALELLE 122 (240)
T ss_pred eecccccccccchHHHHHHhhhH--------------------------------------HHcCCCHHHHHHHHHHHHH
Confidence 99999999999999999975421 0123455667888999999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~ 321 (555)
++||. +..+.+|.+|||||||||||||||+.+|+++|+|||||+|||+....+.+.+ .+.|+|+|+|||++.|+.+
T Consensus 123 ~VGL~-~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~ 201 (240)
T COG1126 123 KVGLA-DKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFARE 201 (240)
T ss_pred HcCch-hhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHH
Confidence 99996 5789999999999999999999999999999999999999999988887765 4679999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+||||++|++|+++. .|+.+++..
T Consensus 202 VadrviFmd~G~iie-~g~p~~~f~ 225 (240)
T COG1126 202 VADRVIFMDQGKIIE-EGPPEEFFD 225 (240)
T ss_pred hhheEEEeeCCEEEE-ecCHHHHhc
Confidence 999999999998754 456666654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=487.97 Aligned_cols=266 Identities=17% Similarity=0.268 Sum_probs=176.4
Q ss_pred hHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEE
Q 008750 53 TVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLV 129 (555)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lv 129 (555)
...+..++.+..+.+++++....++........... .....|+++||+|+|++ .++|+|+||+|++|+++|||
T Consensus 342 ~~~~~~~~~a~~a~~ri~~ii~~~~~~~~~~~~~~~----~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIv 417 (1466)
T PTZ00265 342 LPNITEYMKSLEATNSLYEIINRKPLVENNDDGKKL----KDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFV 417 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCccC----CCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEE
Confidence 334556777888888877765443321110000000 11135999999999975 36999999999999999999
Q ss_pred cCCCccHHHHHHHHHcCCCCCceEEEEc-CCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHH------
Q 008750 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKA-KSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI------ 192 (555)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~-g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~------ 192 (555)
|+||||||||+++|+|+++|++|+|.++ |.+. .||||+|++.++ ..||+||+..+.......
T Consensus 418 G~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF-~~TI~eNI~~g~~~~~~~~~~~~~ 496 (1466)
T PTZ00265 418 GESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLF-SNSIKNNIKYSLYSLKDLEALSNY 496 (1466)
T ss_pred CCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccch-hccHHHHHHhcCCCccccchhccc
Confidence 9999999999999999999999999994 4432 499999999885 579999997532100000
Q ss_pred HH------H-----HHHHHHH---HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc--------
Q 008750 193 AG------K-----LERVQKA---LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-------- 250 (555)
Q Consensus 193 ~~------~-----~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-------- 250 (555)
.. . ....... ......+.......++ . ........++.+.++++.+++..
T Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~-~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g 568 (1466)
T PTZ00265 497 YNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIE-------M-RKNYQTIKDSEVVDVSKKVLIHDFVSALPDK 568 (1466)
T ss_pred cccccccccccccccccccccccchhhhcccccchhhhhh-------c-ccccccCCHHHHHHHHHHhCcHHHHHhCccc
Confidence 00 0 0000000 0000000000000000 0 00000111233444444444321
Q ss_pred --cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 251 --DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 251 --~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
........+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|.+ .|+|+|+||||++.+ +.||
T Consensus 569 ~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD 647 (1466)
T PTZ00265 569 YETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTI-RYAN 647 (1466)
T ss_pred cCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCC
Confidence 112455779999999999999999999999999999999999999999888754 379999999999999 4799
Q ss_pred eeEEecCC
Q 008750 325 KIVETEMG 332 (555)
Q Consensus 325 ri~~l~~G 332 (555)
+|++|++|
T Consensus 648 ~Iivl~~g 655 (1466)
T PTZ00265 648 TIFVLSNR 655 (1466)
T ss_pred EEEEEeCC
Confidence 99999986
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-50 Score=481.72 Aligned_cols=252 Identities=19% Similarity=0.289 Sum_probs=176.7
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
++.....-+.....+..+++|+.+....+..... ..+.. ......|+++|++|+|++ .++|+|+||+|++|+
T Consensus 570 pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~--~~~~~---~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge 644 (1495)
T PLN03232 570 PLNMLPNLLSQVVNANVSLQRIEELLLSEERILA--QNPPL---QPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGS 644 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--ccCCc---CCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCC
Confidence 4455555556677778888877665433221100 00000 012235999999999964 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (555)
+++|||++|||||||+++|+|+++|++|.+..- ...|+||+|++.+ ++.||+||+..+... + . ++..+.++
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~--~~~Iayv~Q~p~L-f~gTIreNI~fg~~~--~-~---e~~~~vl~ 715 (1495)
T PLN03232 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVVI--RGSVAYVPQVSWI-FNATVRENILFGSDF--E-S---ERYWRAID 715 (1495)
T ss_pred EEEEECCCCCcHHHHHHHHhCCCcccCCCEEEe--cCcEEEEcCcccc-ccccHHHHhhcCCcc--C-H---HHHHHHHH
Confidence 999999999999999999999999999876432 3479999999988 678999999754210 0 0 00111111
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEc
Q 008750 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLD 284 (555)
.. .+...+.. +. -|.+....++ -.+|||||||||+||||++.+|+|||||
T Consensus 716 ~~---------------------------~L~~di~~-Lp-~Gd~T~IGe~-G~~LSGGQkQRIaLARAly~~~~IlLLD 765 (1495)
T PLN03232 716 VT---------------------------ALQHDLDL-LP-GRDLTEIGER-GVNISGGQKQRVSMARAVYSNSDIYIFD 765 (1495)
T ss_pred Hh---------------------------CCHHHHHh-CC-CCCCceecCC-CcccCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 00 01111111 11 1222222233 3479999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 285 EPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 285 EPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||+||..+.+.+.+. +.. .++|+|+|||+++.+. .||+|++|++|++. ..|+|++..
T Consensus 766 EptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~-~aD~Ii~L~~G~i~-~~Gt~~eL~ 827 (1495)
T PLN03232 766 DPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLP-LMDRIILVSEGMIK-EEGTFAELS 827 (1495)
T ss_pred CCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHH-hCCEEEEEeCCEEE-EecCHHHHH
Confidence 99999999988877553 443 5799999999999986 59999999999874 556666553
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=481.15 Aligned_cols=251 Identities=20% Similarity=0.291 Sum_probs=178.0
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
++......+.+..++..+++|+.+....+..... ..+.. ....+.|+++|++|+|+. +++|+|+||+|++|+
T Consensus 570 pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~--~~~~~---~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge 644 (1622)
T PLN03130 570 PLFMLPNLITQAVNANVSLKRLEELLLAEERVLL--PNPPL---EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGS 644 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc--cCCcc---cCCCCceEEEeeEEEccCCCCCceeeceeEEecCCC
Confidence 4444445556677777888877665432211000 00000 011245999999999963 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKAL 203 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 203 (555)
+++|||++|||||||+++|+|+++|++ |+|.+.+ .|+||+|++.+ ++.||+||+..+-... . ++..+.+
T Consensus 645 ~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~---~Iayv~Q~p~L-fngTIreNI~fg~~~d---~---e~y~~vl 714 (1622)
T PLN03130 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG---TVAYVPQVSWI-FNATVRDNILFGSPFD---P---ERYERAI 714 (1622)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcC---eEEEEcCcccc-CCCCHHHHHhCCCccc---H---HHHHHHH
Confidence 999999999999999999999999999 9999754 69999999988 6789999997542100 0 0011111
Q ss_pred hhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEE
Q 008750 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL 283 (555)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlL 283 (555)
+.+ .+...+..+-+ |......++ -.+|||||||||+|||||+.+|+||||
T Consensus 715 ~a~---------------------------~L~~di~~LP~--Gd~T~IGe~-G~~LSGGQKQRIaLARAly~~~~IlLL 764 (1622)
T PLN03130 715 DVT---------------------------ALQHDLDLLPG--GDLTEIGER-GVNISGGQKQRVSMARAVYSNSDVYIF 764 (1622)
T ss_pred HHh---------------------------CcHHHHHhCCC--cccccccCC-CCCCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 100 11111111111 222222233 357999999999999999999999999
Q ss_pred cCCCCCCCHHHHHHHHH-HHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 284 DEPTNHLDLDTIEWLEG-YLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 284 DEPTs~LD~~~~~~l~~-~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||||+||+.+.+.+.+ .+.. .++|+|+|||+++.+. .||+|++|++|++. ..|+|++..
T Consensus 765 DEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~-~aD~Ii~L~~G~i~-e~Gt~~eL~ 827 (1622)
T PLN03130 765 DDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS-QVDRIILVHEGMIK-EEGTYEELS 827 (1622)
T ss_pred CCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHH-hCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999998877654 4443 4899999999999986 59999999999874 567666553
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=479.78 Aligned_cols=254 Identities=18% Similarity=0.267 Sum_probs=179.8
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGE 124 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge 124 (555)
.++......+...+++..+++|+.+....+............. ......|+++|++|.|++ .++|+|+||+|++|+
T Consensus 588 ~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~ 665 (1522)
T TIGR00957 588 FPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIK--PGEGNSITVHNATFTWARDLPPTLNGITFSIPEGA 665 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccC--CCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCC
Confidence 3455555555667777777777766543221111000000000 011136999999999974 479999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (555)
+++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+ ++.||+||+..+..... .+...+ ++
T Consensus 666 ~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---~i~yv~Q~~~l-~~~Ti~eNI~~g~~~~~---~~~~~~---~~ 735 (1522)
T TIGR00957 666 LVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---SVAYVPQQAWI-QNDSLRENILFGKALNE---KYYQQV---LE 735 (1522)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC---EEEEEcCCccc-cCCcHHHHhhcCCccCH---HHHHHH---HH
Confidence 9999999999999999999999999999999986 69999999887 67899999975321000 000000 00
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEc
Q 008750 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLD 284 (555)
. ..+...+.. +. .|... ..+....+|||||||||+|||||+.+|+++|||
T Consensus 736 ~---------------------------~~l~~~l~~-~~-~g~~t-~ig~~g~~LSGGQkqRiaLARAl~~~~~illLD 785 (1522)
T TIGR00957 736 A---------------------------CALLPDLEI-LP-SGDRT-EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFD 785 (1522)
T ss_pred H---------------------------hCCHHHHHh-cC-CCCCc-eecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 0 000000110 10 12211 234556799999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHcC-----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 285 EPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 285 EPTs~LD~~~~~~l~~~l~~-----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++||+.+.+++.+.+.+ .++|+|+|||+++++.. ||+|++|++|++. ..|+|++.
T Consensus 786 Ep~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~-~~g~~~~l 848 (1522)
T TIGR00957 786 DPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKIS-EMGSYQEL 848 (1522)
T ss_pred CCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEE-eeCCHHHH
Confidence 99999999999999887632 47899999999999976 9999999999874 44555443
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-51 Score=388.47 Aligned_cols=209 Identities=27% Similarity=0.425 Sum_probs=186.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||||.|+++.+++|+||+|++||++++||||||||||+||+|.++++|++|+|.++|.+. +||||
T Consensus 1 MI~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred CceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999998753 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
-|...+||++||.||+..... ....+...+++++.++|+.+
T Consensus 81 iQqigLFPh~Tv~eNIa~VP~---------------------------------------L~~w~k~~i~~r~~ELl~lv 121 (309)
T COG1125 81 IQQIGLFPHLTVAENIATVPK---------------------------------------LLGWDKERIKKRADELLDLV 121 (309)
T ss_pred hhhcccCCCccHHHHHHhhhh---------------------------------------hcCCCHHHHHHHHHHHHHHh
Confidence 999999999999999864210 01234456778999999999
Q ss_pred CCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHh
Q 008750 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~ 321 (555)
||++ ++.+|+|++|||||+|||.+||||+.+|++||+|||+++|||-++..|.+.+ ++.++||||||||++++..
T Consensus 122 gL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~k 201 (309)
T COG1125 122 GLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALK 201 (309)
T ss_pred CCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHh
Confidence 9986 6999999999999999999999999999999999999999999998888765 3579999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++|||++|+.|+++.|. +.++.+
T Consensus 202 Ladri~vm~~G~i~Q~~-~P~~il 224 (309)
T COG1125 202 LADRIAVMDAGEIVQYD-TPDEIL 224 (309)
T ss_pred hhceEEEecCCeEEEeC-CHHHHH
Confidence 99999999999987664 444443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=396.88 Aligned_cols=208 Identities=33% Similarity=0.551 Sum_probs=185.5
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+|++++|+|.|+. ..+|+||||+|++||++||||.||||||||+|+|.++..|++|+|.++|.+.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~ 80 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQ 80 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHH
Confidence 5899999999975 4699999999999999999999999999999999999999999999999542
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
+|||+||+++++.+.||++|+..++. . ...+..+++++
T Consensus 81 ~R~~IGMIFQhFnLLssrTV~~NvA~PLe----i-----------------------------------ag~~k~ei~~R 121 (339)
T COG1135 81 LRQKIGMIFQHFNLLSSRTVFENVAFPLE----L-----------------------------------AGVPKAEIKQR 121 (339)
T ss_pred HHhhccEEeccccccccchHHhhhhhhHh----h-----------------------------------cCCCHHHHHHH
Confidence 69999999999989999999976531 0 12345677899
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSH 314 (555)
+.++|+.+||+ +..+++|.+|||||||||+|||||+.+|+|||+|||||+|||++-+.+.++|+ +.|.||++|||
T Consensus 122 V~elLelVgL~-dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITH 200 (339)
T COG1135 122 VAELLELVGLS-DKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITH 200 (339)
T ss_pred HHHHHHHcCCh-hhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999997 78899999999999999999999999999999999999999999888888774 47999999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|+.+.++||||.+|++|+++. .|...+..
T Consensus 201 Em~Vvk~ic~rVavm~~G~lvE-~G~v~~vF 230 (339)
T COG1135 201 EMEVVKRICDRVAVLDQGRLVE-EGTVSEVF 230 (339)
T ss_pred hHHHHHHHhhhheEeeCCEEEE-eccHHHhh
Confidence 9999999999999999999854 45554443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=388.19 Aligned_cols=197 Identities=30% Similarity=0.428 Sum_probs=175.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEeccc
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~ 170 (555)
..+.+++|++.|++..+|+||||+|.+||+++||||||||||||||+|+|+.+|++|+|.++|.. ..++||+|++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 35899999999999999999999999999999999999999999999999999999999998864 3799999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.++|..||.+|+..+... ......+..+++.++|+.+||.
T Consensus 82 ~LlPW~Tv~~NV~l~l~~---------------------------------------~~~~~~e~~~~a~~~L~~VgL~- 121 (248)
T COG1116 82 ALLPWLTVLDNVALGLEL---------------------------------------RGKSKAEARERAKELLELVGLA- 121 (248)
T ss_pred cccchhhHHhhheehhhc---------------------------------------cccchHhHHHHHHHHHHHcCCc-
Confidence 999999999999754310 0112334456889999999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri 326 (555)
+..+++|++|||||||||+|||||+.+|++||||||+++||..++..+.+.| ++.+.|||+||||++++-.++|||
T Consensus 122 ~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRi 201 (248)
T COG1116 122 GFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRV 201 (248)
T ss_pred chhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEE
Confidence 6789999999999999999999999999999999999999999987776654 567899999999999999999999
Q ss_pred EEecCC
Q 008750 327 VETEMG 332 (555)
Q Consensus 327 ~~l~~G 332 (555)
++|.++
T Consensus 202 vvl~~~ 207 (248)
T COG1116 202 VVLSNR 207 (248)
T ss_pred EEecCC
Confidence 999984
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-49 Score=377.40 Aligned_cols=218 Identities=23% Similarity=0.405 Sum_probs=190.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------- 161 (555)
.+.|++++|+++||++.+++||||+|++||+++|+|+||||||||||+|.|+++|++|+|.++|.+.
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5679999999999999999999999999999999999999999999999999999999999998753
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|+++|.-.+|.++||+||+..++.+.. .++...+++.+..
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~--------------------------------------~lp~~~i~~lv~~ 127 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHT--------------------------------------KLPESLIRELVLM 127 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhc--------------------------------------cCCHHHHHHHHHH
Confidence 59999999999999999999987654321 1223334555666
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
-|+.+||.....+.+|++|||||++|++|||||+.+|++|++||||+||||.+...+.++++ ..|.|+|+||||+.
T Consensus 128 KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~ 207 (263)
T COG1127 128 KLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207 (263)
T ss_pred HHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChH
Confidence 78899999877899999999999999999999999999999999999999988776666553 36999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHHHHHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAW 351 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~ 351 (555)
.+..+||||++|.+|++ .+.|+++++......+
T Consensus 208 s~~~i~Drv~~L~~gkv-~~~Gt~~el~~sd~P~ 240 (263)
T COG1127 208 SLLTIADRVAVLADGKV-IAEGTPEELLASDDPW 240 (263)
T ss_pred HHHhhhceEEEEeCCEE-EEeCCHHHHHhCCCHH
Confidence 99999999999999996 6789988876644433
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=379.08 Aligned_cols=200 Identities=28% Similarity=0.501 Sum_probs=177.7
Q ss_pred ccEEEEeEEEEeCCce----eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 96 SGVKLENISKSYKGVT----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~----vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
++|+++|+++.|++.. +|++|||+|.+||++||||+||||||||+++|+|+.+|++|+|.++|..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4699999999998766 9999999999999999999999999999999999999999999999842
Q ss_pred ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 ~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..|-+|||||. +.|..||.+.+..+.. ..+..+.+++
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~-----------------------------------------~~~~~~~~~~ 120 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLR-----------------------------------------PHGLSKSQQR 120 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhc-----------------------------------------cCCccHHHHH
Confidence 35899999985 5577888887654321 0123345566
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSH 314 (555)
+.++|+.+|++...++|+|++|||||+|||||||||+.+|++||||||||+||+.....++++|. +++.|+|||||
T Consensus 121 i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsH 200 (252)
T COG1124 121 IAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISH 200 (252)
T ss_pred HHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeC
Confidence 89999999999999999999999999999999999999999999999999999999888888763 57899999999
Q ss_pred CHHHHHhhcceeEEecCCeEee
Q 008750 315 DRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~ 336 (555)
|+..+..+||||++|++|.++.
T Consensus 201 dl~~v~~~cdRi~Vm~~G~ivE 222 (252)
T COG1124 201 DLALVEHMCDRIAVMDNGQIVE 222 (252)
T ss_pred cHHHHHHHhhheeeeeCCeEEE
Confidence 9999999999999999999754
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-47 Score=453.20 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=174.9
Q ss_pred CccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eE
Q 008750 95 SSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~i 163 (555)
...|+++||++.|+ ++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 926 ~~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~~~~~r~~I 1005 (2272)
T TIGR01257 926 VPGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETNLDAVRQSL 1005 (2272)
T ss_pred CceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcchHHHHhhcE
Confidence 45799999999995 56899999999999999999999999999999999999999999999998542 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||++|++.+++.+||+|++..... + ......+.++++.+++
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~---------------l------------------------kg~~~~~~~~~v~~lL 1046 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQ---------------L------------------------KGRSWEEAQLEMEAML 1046 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHH
Confidence 999999988888999999853210 0 0011122345678899
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+.+|+. +..++++.+|||||||||+||+||+.+|+||||||||++||+.+++.++++|++ .|+|||++|||++++..
T Consensus 1047 ~~vgL~-~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~ 1125 (2272)
T TIGR01257 1047 EDTGLH-HKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADL 1125 (2272)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHH
Confidence 999996 467899999999999999999999999999999999999999999999998854 48899999999999999
Q ss_pred hcceeEEecCCeEe
Q 008750 322 LCTKIVETEMGVSR 335 (555)
Q Consensus 322 ~~dri~~l~~G~~~ 335 (555)
+||||++|++|++.
T Consensus 1126 laDrI~iL~~GkL~ 1139 (2272)
T TIGR01257 1126 LGDRIAIISQGRLY 1139 (2272)
T ss_pred hCCEEEEEECCEEE
Confidence 99999999999863
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=456.28 Aligned_cols=196 Identities=23% Similarity=0.356 Sum_probs=151.1
Q ss_pred EeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHh
Q 008750 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
.++++++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.+. ..|+|++|++.+ ++.||+||+...
T Consensus 669 ~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~---~~i~yv~Q~~~l-~~~Tv~enI~~~ 744 (1560)
T PTZ00243 669 ELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE---RSIAYVPQQAWI-MNATVRGNILFF 744 (1560)
T ss_pred ccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC---CeEEEEeCCCcc-CCCcHHHHHHcC
Confidence 3455679999999999999999999999999999999999999999999875 369999999987 578999999753
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChH
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSG 263 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGG 263 (555)
..... +.....++ . ..+.+.++.+ |+.. ..+..+.+||||
T Consensus 745 ~~~~~------~~~~~~~~---------------------------~----~~l~~~l~~l~~g~~t-~i~~~g~~LSGG 786 (1560)
T PTZ00243 745 DEEDA------ARLADAVR---------------------------V----SQLEADLAQLGGGLET-EIGEKGVNLSGG 786 (1560)
T ss_pred ChhhH------HHHHHHHH---------------------------H----hhhHHHHHHhhccchH-HhcCCCCCCCHH
Confidence 21100 00000000 0 0111223333 4432 335567899999
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-H--cCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCC
Q 008750 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-L--GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (555)
Q Consensus 264 qrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l--~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~ 340 (555)
|||||+|||||+.+|++|||||||++||+.+.+.+.+. + ...|+|+|+||||++++. .||+|++|++|++ .+.|+
T Consensus 787 QkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~-~ad~ii~l~~G~i-~~~G~ 864 (1560)
T PTZ00243 787 QKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP-RADYVVALGDGRV-EFSGS 864 (1560)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EEecC
Confidence 99999999999999999999999999999987777653 2 124899999999999996 6999999999987 46677
Q ss_pred hHHHH
Q 008750 341 YSQYV 345 (555)
Q Consensus 341 y~~~~ 345 (555)
|+++.
T Consensus 865 ~~~l~ 869 (1560)
T PTZ00243 865 SADFM 869 (1560)
T ss_pred HHHHH
Confidence 77654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=383.33 Aligned_cols=212 Identities=27% Similarity=0.424 Sum_probs=180.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+++++||+++|+++++|+|+||+|++|++++||||||||||||||+|+|+++|.+|+|.++|.+. .++||
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 58999999999999999999999999999999999999999999999999999999999999753 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
||.+...+..||+|.+..+-...... +. ....+-++.+.+.|+.+
T Consensus 82 pQ~~~~~~~~tV~d~V~~GR~p~~~~----------------------------------~~-~~~~~D~~~v~~aL~~~ 126 (258)
T COG1120 82 PQSPSAPFGLTVYELVLLGRYPHLGL----------------------------------FG-RPSKEDEEIVEEALELL 126 (258)
T ss_pred ccCCCCCCCcEEeehHhhcCCccccc----------------------------------cc-CCCHhHHHHHHHHHHHh
Confidence 99998888999999876432110000 00 00111234688889999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
|+. ++.+|++.+|||||||||.|||||+++|++||||||||+||....-.+.+.++ +.|.|+|+|.||++.+.++
T Consensus 127 ~~~-~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ry 205 (258)
T COG1120 127 GLE-HLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARY 205 (258)
T ss_pred CcH-HHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHh
Confidence 996 67899999999999999999999999999999999999999999888887764 4689999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++|++|++ +..|...+.+
T Consensus 206 ad~~i~lk~G~i-~a~G~p~evl 227 (258)
T COG1120 206 ADHLILLKDGKI-VAQGTPEEVL 227 (258)
T ss_pred CCEEEEEECCeE-EeecCcchhc
Confidence 999999999997 4567655443
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=380.51 Aligned_cols=214 Identities=27% Similarity=0.416 Sum_probs=180.2
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEe
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLS 167 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~ 167 (555)
.+.|+++|++++|++.++|+||||+|++|++++||||||||||||+|+|+|+++|++|+|.+.|.+ .+|||||
T Consensus 2 ~~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVP 81 (254)
T COG1121 2 MPMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVP 81 (254)
T ss_pred CcEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcC
Confidence 356999999999986689999999999999999999999999999999999999999999998753 4799999
Q ss_pred ccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 168 QEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 168 Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
|.. ...|..||+|.+..+....... +..... .-.+.+.++|+.
T Consensus 82 Q~~~~d~~fP~tV~d~V~~g~~~~~g~----------------------------------~~~~~~-~d~~~v~~aL~~ 126 (254)
T COG1121 82 QKSSVDRSFPITVKDVVLLGRYGKKGW----------------------------------FRRLNK-KDKEKVDEALER 126 (254)
T ss_pred cccccCCCCCcCHHHHHHccCcccccc----------------------------------cccccH-HHHHHHHHHHHH
Confidence 965 4446779999886542111000 000111 125678999999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ++.+|.+.+|||||+|||.|||||+++|++|||||||+++|+.++..+.++|+ +.|+|||+||||+..+.++
T Consensus 127 Vgm~-~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~ 205 (254)
T COG1121 127 VGME-DLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAY 205 (254)
T ss_pred cCch-hhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhh
Confidence 9997 78899999999999999999999999999999999999999999999988874 3599999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+|+.|+... .+.|+..++..
T Consensus 206 ~D~vi~Ln~~~--~~~G~~~~~~~ 227 (254)
T COG1121 206 FDRVICLNRHL--IASGPPEEVLT 227 (254)
T ss_pred CCEEEEEcCee--EeccChhhccC
Confidence 99999998764 46787766654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-47 Score=368.41 Aligned_cols=198 Identities=28% Similarity=0.455 Sum_probs=171.5
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+++++||++.|+. ..+|++|||+|++||+++|+|||||||||||++|.|+.+|++|.|.++|.+
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 3689999999953 369999999999999999999999999999999999999999999999853
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..||||+|++.+.+.+||.||+..+..- . .........+
T Consensus 81 R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~---------------~------------------------~~~~~~~~~~ 121 (226)
T COG1136 81 RRKKIGFVFQNFNLLPDLTVLENVELPLLI---------------A------------------------GKSAGRRKRA 121 (226)
T ss_pred HHHhEEEECccCCCCCCCCHHHHHHhHHHH---------------c------------------------CCChhHHHHH
Confidence 2599999999999999999999754210 0 0111134567
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSH 314 (555)
+..+++.+|+.+...+++|.+|||||||||||||||+.+|++||.||||.+||..+.+.+.+++. +.|.|+|||||
T Consensus 122 ~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTH 201 (226)
T COG1136 122 AEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTH 201 (226)
T ss_pred HHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 78889999998666668899999999999999999999999999999999999999998888774 45899999999
Q ss_pred CHHHHHhhcceeEEecCCeE
Q 008750 315 DRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~ 334 (555)
|...+. .|||++.|++|++
T Consensus 202 d~~lA~-~~dr~i~l~dG~~ 220 (226)
T COG1136 202 DPELAK-YADRVIELKDGKI 220 (226)
T ss_pred CHHHHH-hCCEEEEEeCCee
Confidence 999996 7999999999984
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-48 Score=394.07 Aligned_cols=213 Identities=29% Similarity=0.446 Sum_probs=186.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFL 166 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v 166 (555)
.+.|+++||+++|++..+++||||+|++||+++|+||||||||||||+|+|++.|++|+|.++|.++ .||+|
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 3569999999999999999999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
||+..+||++||.+|+..++.. . ......++.+++.++|+.+
T Consensus 83 FQ~YALFPHltV~~NVafGLk~---------------~-----------------------~~~~~~~i~~rv~e~L~lV 124 (352)
T COG3842 83 FQSYALFPHMTVEENVAFGLKV---------------R-----------------------KKLKKAEIKARVEEALELV 124 (352)
T ss_pred ecCcccCCCCcHHHHhhhhhhh---------------c-----------------------CCCCHHHHHHHHHHHHHHc
Confidence 9999999999999999765420 0 0112234678999999999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~ 322 (555)
++. .+.+|+|++|||||+|||||||||+.+|++||||||.|+||..-+..+...| ++.|.|+|+||||.+++..+
T Consensus 125 ~L~-~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~m 203 (352)
T COG3842 125 GLE-GFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAM 203 (352)
T ss_pred Cch-hhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhh
Confidence 997 4789999999999999999999999999999999999999998877766544 56799999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+|||++|++|++ ...|...+++..
T Consensus 204 sDrI~Vm~~G~I-~Q~gtP~eiY~~ 227 (352)
T COG3842 204 SDRIAVMNDGRI-EQVGTPEEIYER 227 (352)
T ss_pred ccceEEccCCce-eecCCHHHHhhC
Confidence 999999999997 455666665543
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=444.73 Aligned_cols=191 Identities=24% Similarity=0.391 Sum_probs=144.8
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
+++|+|+||+|++|++++|+|+|||||||||++|+|+++|++|+|.++| .|+|++|++.++ +.||+||+..+....
T Consensus 439 ~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g---~iayv~Q~~~l~-~~Ti~eNI~~g~~~~ 514 (1490)
T TIGR01271 439 TPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG---RISFSPQTSWIM-PGTIKDNIIFGLSYD 514 (1490)
T ss_pred CcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC---EEEEEeCCCccC-CccHHHHHHhccccc
Confidence 3589999999999999999999999999999999999999999999986 699999999885 469999997542100
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-ccccCCCCCCCChHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv 268 (555)
. .+...+ +.. .. +.+.++.+... .........+|||||||||
T Consensus 515 ~---~~~~~~---~~~---------------------------~~----L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi 557 (1490)
T TIGR01271 515 E---YRYTSV---IKA---------------------------CQ----LEEDIALFPEKDKTVLGEGGITLSGGQRARI 557 (1490)
T ss_pred h---HHHHHH---HHH---------------------------Hh----HHHHHHhccccccccccCcCCCcCHHHHHHH
Confidence 0 000000 000 00 11112221110 0112344679999999999
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
+|||||+.+|+++||||||++||+.+.+.+.+. +.. .++|+|+|||+++.+.. ||+|++|++|++. ..|++++
T Consensus 558 ~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~-ad~ii~l~~g~i~-~~g~~~~ 633 (1490)
T TIGR01271 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKK-ADKILLLHEGVCY-FYGTFSE 633 (1490)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHh-CCEEEEEECCEEE-EEcCHHH
Confidence 999999999999999999999999999998874 332 48999999999999975 9999999999863 3444433
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-48 Score=376.96 Aligned_cols=209 Identities=29% Similarity=0.468 Sum_probs=182.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC---C--------ceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS---N--------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~---~--------~~ig~ 165 (555)
+|.++|+++.|+...+++||||+|+.||.+||+||||||||||||+|+|++.|++|.|.++|. + .+|||
T Consensus 2 ~i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGf 81 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGF 81 (345)
T ss_pred ceeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeE
Confidence 489999999999999999999999999999999999999999999999999999999999986 2 36999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
|+|+..+++++||.+|+..+..-. ....+...+..++.++|+.
T Consensus 82 vFQ~YALF~HmtVa~NIAFGl~~~-------------------------------------~~~p~~~~~r~rv~elL~l 124 (345)
T COG1118 82 VFQHYALFPHMTVADNIAFGLKVR-------------------------------------KERPSEAEIRARVEELLRL 124 (345)
T ss_pred EEechhhcccchHHhhhhhccccc-------------------------------------ccCCChhhHHHHHHHHHHH
Confidence 999999999999999997654210 0012334567889999999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~ 321 (555)
+.|. ...+++|.+|||||||||||||||+.+|++||||||+++||...+..|..+| .+.|.|+|+||||.+++.+
T Consensus 125 vqL~-~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ 203 (345)
T COG1118 125 VQLE-GLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALE 203 (345)
T ss_pred hccc-chhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHh
Confidence 9996 5789999999999999999999999999999999999999998776666655 4579999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||||++|++|++.. .|+.++.
T Consensus 204 ladrvvvl~~G~Ieq-vg~p~ev 225 (345)
T COG1118 204 LADRVVVLNQGRIEQ-VGPPDEV 225 (345)
T ss_pred hcceEEEecCCeeee-eCCHHHH
Confidence 999999999999744 4554443
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=387.00 Aligned_cols=208 Identities=29% Similarity=0.448 Sum_probs=182.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEe
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~ 167 (555)
..|+++||++.||+..+++||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..|+|||
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVF 81 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVF 81 (338)
T ss_pred cEEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEe
Confidence 35899999999987669999999999999999999999999999999999999999999999864 3699999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|+..++|++||++|+..+++. ..+...++++++.++.+.++
T Consensus 82 Q~yALyPhmtV~~Niaf~Lk~---------------------------------------~~~~k~ei~~rV~eva~~L~ 122 (338)
T COG3839 82 QNYALYPHMTVYENIAFGLKL---------------------------------------RGVPKAEIDKRVKEVAKLLG 122 (338)
T ss_pred CCccccCCCcHHHHhhhhhhh---------------------------------------CCCchHHHHHHHHHHHHHcC
Confidence 999999999999999765421 12344567889999999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ++++|+|.+|||||||||||||||+.+|+++|||||+|+||...+..+...+ ++.+.|+|+||||..++..++
T Consensus 123 l~-~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtla 201 (338)
T COG3839 123 LE-HLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLA 201 (338)
T ss_pred Ch-hHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhC
Confidence 97 5779999999999999999999999999999999999999998777666554 457899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++|++|++... |...+.
T Consensus 202 dri~Vm~~G~i~Q~-g~p~el 221 (338)
T COG3839 202 DRIVVMNDGRIQQV-GTPLEL 221 (338)
T ss_pred CEEEEEeCCeeeec-CChHHH
Confidence 99999999987544 444433
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-47 Score=348.51 Aligned_cols=202 Identities=28% Similarity=0.484 Sum_probs=180.0
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------e
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------K 162 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------~ 162 (555)
+|+++||++.|+ +.++|+||||+|++||++-|+||||||||||+|+|++..+|++|+|.++|.+. +
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~ 80 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80 (223)
T ss_pred CeeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhe
Confidence 589999999995 45699999999999999999999999999999999999999999999998653 6
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||+|+||+.+.+..||+||+..++. + ......++.+++.++
T Consensus 81 IGvVFQD~rLL~~~tvyeNVA~pL~----v-----------------------------------~G~~~~~i~~rV~~~ 121 (223)
T COG2884 81 IGVVFQDFRLLPDRTVYENVALPLR----V-----------------------------------IGKPPREIRRRVSEV 121 (223)
T ss_pred eeeEeeeccccccchHhhhhhhhhh----c-----------------------------------cCCCHHHHHHHHHHH
Confidence 9999999999999999999976531 0 123455678899999
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l 319 (555)
|+.+||. +..+..|.+|||||||||+||||++.+|++||.||||-+|||.....+.+++ .+.|.||||.|||.+.+
T Consensus 122 L~~VgL~-~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv 200 (223)
T COG2884 122 LDLVGLK-HKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200 (223)
T ss_pred HHHhccc-hhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHH
Confidence 9999996 4667888999999999999999999999999999999999999888777765 45799999999999999
Q ss_pred HhhcceeEEecCCeEeecc
Q 008750 320 DQLCTKIVETEMGVSRTYE 338 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~ 338 (555)
+++-.|++.|++|++..+.
T Consensus 201 ~~~~~rvl~l~~Grl~~d~ 219 (223)
T COG2884 201 NRMRHRVLALEDGRLVRDE 219 (223)
T ss_pred HhccCcEEEEeCCEEEecc
Confidence 9999999999999986554
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-47 Score=358.54 Aligned_cols=215 Identities=24% Similarity=0.404 Sum_probs=183.8
Q ss_pred ccEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------c
Q 008750 96 SGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (555)
Q Consensus 96 ~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~ 161 (555)
.+|+++||++.| +++.+|+||||+|++||+++|||+||||||||||+|+|+.+|++|+|.++|.+ .
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 469999999999 67889999999999999999999999999999999999999999999999853 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+|||++|.+.+.+..+|.+|++.+......... ..+ .+...+-...+.+
T Consensus 82 ~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~------------------------------slf-glfsk~dk~~Al~ 130 (258)
T COG3638 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWR------------------------------SLF-GLFSKEDKAQALD 130 (258)
T ss_pred hceeEeccCCcccccHHHHHHHhhhcccchHHH------------------------------HHh-CCCCHHHHHHHHH
Confidence 599999999999999999999765322111110 000 1122233456778
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
.|+++|+. +.+..+..+|||||+|||+|||||+++|+++|.|||+++|||.+.+.+++.|+ +.|.|+|+..|+++
T Consensus 131 aLervgi~-~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vd 209 (258)
T COG3638 131 ALERVGIL-DKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209 (258)
T ss_pred HHHHcCcH-HHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHH
Confidence 89999996 45667789999999999999999999999999999999999999998888875 46999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
.+.++||||+-|++|++ +|+|+.++
T Consensus 210 lA~~Y~~Riigl~~G~i-vfDg~~~e 234 (258)
T COG3638 210 LAKKYADRIIGLKAGRI-VFDGPASE 234 (258)
T ss_pred HHHHHHhhheEecCCcE-EEeCChhh
Confidence 99999999999999996 78998766
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=365.99 Aligned_cols=210 Identities=28% Similarity=0.442 Sum_probs=183.5
Q ss_pred ccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
+++.++|++|+|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|.|.++|.+ .+|
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468999999999765 89999999999999999999999999999999999999999999998864 259
Q ss_pred EEEecccccC-cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFEVS-MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~~~-~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|||+|+|..+ +..||.+.+..+..+ ..++..++++++.++
T Consensus 82 G~VfQnpd~q~~~~tV~~evafg~~n---------------------------------------~g~~~~e~~~rv~~~ 122 (235)
T COG1122 82 GLVFQNPDDQLFGPTVEDEVAFGLEN---------------------------------------LGLPREEIEERVAEA 122 (235)
T ss_pred EEEEECcccccccCcHHHHHhhchhh---------------------------------------cCCCHHHHHHHHHHH
Confidence 9999999655 567999987654321 123344578899999
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
+..+|+.. ..++++.+|||||||||+||.+|+.+|++|||||||++||+.+++.+.+++++ .|.|+|++|||+++
T Consensus 123 l~~vgl~~-~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~ 201 (235)
T COG1122 123 LELVGLEE-LLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201 (235)
T ss_pred HHHcCchh-hccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHH
Confidence 99999974 58999999999999999999999999999999999999999999999988753 36899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+..+||++++|++|++ .++|...++..
T Consensus 202 ~~~~ad~v~vl~~G~i-~~~g~p~~i~~ 228 (235)
T COG1122 202 VLEYADRVVVLDDGKI-LADGDPAEIFN 228 (235)
T ss_pred HHhhCCEEEEEECCEE-eecCCHHHHhh
Confidence 9999999999999997 67787655443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=436.94 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=155.8
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCCCc---------eEEEEecccccCcCc
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKSNM---------KIAFLSQEFEVSMSR 176 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~g~~~---------~ig~v~Q~~~~~~~~ 176 (555)
+++|+|||++|++||+++|+|+||||||||||+|+|+. .|++|+|.++|.+. .++|++|+..+++.+
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l 153 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHL 153 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEEeccccccCCCC
Confidence 46999999999999999999999999999999999986 57999999998532 389999998888899
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH-HHHHHHhhhcCCCccccC-
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD-AKVSKLMPELGFTADDGD- 254 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~lgl~~~~~~- 254 (555)
||+|++..+.. +.. .... . ......+.. ..++.+++.+||.+ ..+
T Consensus 154 TV~E~l~f~~~---------------~~~-~~~~--~--------------~~~~~~~~~~~~~~~~l~~lgL~~-~~~t 200 (1394)
T TIGR00956 154 TVGETLDFAAR---------------CKT-PQNR--P--------------DGVSREEYAKHIADVYMATYGLSH-TRNT 200 (1394)
T ss_pred CHHHHHHHHHH---------------hCC-CCCC--C--------------CCCCHHHHHHHHHHHHHHHcCccc-ccCc
Confidence 99999864311 000 0000 0 000011111 22456788899964 333
Q ss_pred ----CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH-HHHHhhcce
Q 008750 255 ----RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (555)
Q Consensus 255 ----~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~-~~l~~~~dr 325 (555)
..+..|||||||||+||++|+.+|+||+|||||++||+.+...+.+.|++ .|.|+|+++|++ +.+.+++|+
T Consensus 201 ~vg~~~~~~LSGGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~ 280 (1394)
T TIGR00956 201 KVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDK 280 (1394)
T ss_pred eeCCCcCCCCCcccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhce
Confidence 34678999999999999999999999999999999999999998887753 489999999996 788889999
Q ss_pred eEEecCCeEeeccCChH
Q 008750 326 IVETEMGVSRTYEGNYS 342 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~ 342 (555)
|++|++|++ .|.|+.+
T Consensus 281 v~~L~~G~i-v~~G~~~ 296 (1394)
T TIGR00956 281 VIVLYEGYQ-IYFGPAD 296 (1394)
T ss_pred EEEEeCCeE-EEECCHH
Confidence 999999986 3555443
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-46 Score=384.72 Aligned_cols=208 Identities=27% Similarity=0.461 Sum_probs=179.9
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
+|+++||+++|++ .++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~ 80 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKA 80 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 4899999999952 4799999999999999999999999999999999999999999999998532
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
+|||+||++.+++..||.+|+..+... ......+..+++
T Consensus 81 r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v 121 (343)
T TIGR02314 81 RRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEIKRKV 121 (343)
T ss_pred hcCEEEEECCccccccCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHH
Confidence 599999999998889999998643110 001122345678
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|++ .|.|||+||||
T Consensus 122 ~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~ 200 (343)
T TIGR02314 122 TELLALVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 8899999996 567899999999999999999999999999999999999999999999888754 48999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++.++||+|++|++|++. ..|+..++.
T Consensus 201 ~~~v~~~~d~v~vl~~G~iv-~~g~~~~v~ 229 (343)
T TIGR02314 201 MDVVKRICDCVAVISNGELI-EQGTVSEIF 229 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 99999999999999999974 567776654
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=379.14 Aligned_cols=209 Identities=27% Similarity=0.436 Sum_probs=180.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAF 165 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~ 165 (555)
.++|+++||+++|++..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..|||
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 356999999999998889999999999999999999999999999999999999999999998864 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
+||++.+++.+||+||+..... + ......+...++.++++.
T Consensus 85 v~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~ 125 (306)
T PRK13537 85 VPQFDNLDPDFTVRENLLVFGR---------------Y------------------------FGLSAAAARALVPPLLEF 125 (306)
T ss_pred EeccCcCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHH
Confidence 9999998888999999753110 0 001112234567788889
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+||||||||++||+||+.+|++|||||||++||+.++.+++++|++ .|.|||++||+++++..+
T Consensus 126 ~~l~-~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~ 204 (306)
T PRK13537 126 AKLE-NKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL 204 (306)
T ss_pred cCCc-hHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHh
Confidence 9996 467889999999999999999999999999999999999999999999998754 589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++|++|++ .+.|+.+++
T Consensus 205 ~d~i~il~~G~i-~~~g~~~~l 225 (306)
T PRK13537 205 CDRLCVIEEGRK-IAEGAPHAL 225 (306)
T ss_pred CCEEEEEECCEE-EEECCHHHH
Confidence 999999999997 466776554
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-45 Score=364.73 Aligned_cols=208 Identities=28% Similarity=0.430 Sum_probs=176.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ceEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKIA 164 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ig 164 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 478999999988889999999999999999999999999999999999999999999998742 2489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+...... .. .........++.++++
T Consensus 81 ~v~q~~~~~~~~tv~~~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~~~l~ 122 (235)
T cd03261 81 MLFQSGALFDSLTVFENVAFPLRE---------------HT-----------------------RLSEEEIREIVLEKLE 122 (235)
T ss_pred EEccCcccCCCCcHHHHHHHHHhh---------------cc-----------------------CCCHHHHHHHHHHHHH
Confidence 999999887888999998532100 00 0011123446777889
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++.
T Consensus 123 ~~~l~-~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~ 201 (235)
T cd03261 123 AVGLR-GAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAF 201 (235)
T ss_pred HcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHH
Confidence 99996 456889999999999999999999999999999999999999999999988754 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++ .+.|+++++.
T Consensus 202 ~~~d~v~~l~~G~i-~~~g~~~~~~ 225 (235)
T cd03261 202 AIADRIAVLYDGKI-VAEGTPEELR 225 (235)
T ss_pred HhcCEEEEEECCeE-EEecCHHHHc
Confidence 99999999999987 4567766543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-45 Score=360.24 Aligned_cols=197 Identities=26% Similarity=0.452 Sum_probs=169.5
Q ss_pred cEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------
Q 008750 97 GVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------- 161 (555)
+|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 4789999999964 4699999999999999999999999999999999999999999999987532
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..||.+|+...... . ....+....++.+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~ 121 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRI---------------I------------------------GVPPRDANERVSA 121 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHH
Confidence 489999999887888999998532100 0 0011123456778
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||+++
T Consensus 122 ~l~~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~ 200 (216)
T TIGR00960 122 ALEKVGLE-GKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINL 200 (216)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 89999996 456888999999999999999999999999999999999999999999988754 48999999999999
Q ss_pred HHhhcceeEEecCCe
Q 008750 319 LDQLCTKIVETEMGV 333 (555)
Q Consensus 319 l~~~~dri~~l~~G~ 333 (555)
+..+||+|++|++|+
T Consensus 201 ~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 201 VETYRHRTLTLSRGR 215 (216)
T ss_pred HHHhCCEEEEEeCCc
Confidence 999999999999986
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-46 Score=344.31 Aligned_cols=208 Identities=30% Similarity=0.481 Sum_probs=183.7
Q ss_pred cEEEEeEEEEeCCce-eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEE
Q 008750 97 GVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v 166 (555)
+|++.+++++|+... +++||||++++||++||+|+|||||||+||+|++++.|++|.|.++|.+. +||.+
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~~vrr~IGVl 80 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPSFVRRKIGVL 80 (245)
T ss_pred CeeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChHHHhhhccee
Confidence 589999999998865 99999999999999999999999999999999999999999999998653 69999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+-+..++..+|++||+..... ...+...++++++.++.+.+
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~---------------------------------------L~~l~~~~~kari~~l~k~l 121 (245)
T COG4555 81 FGERGLYARLTARENLKYFAR---------------------------------------LNGLSRKEIKARIAELSKRL 121 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHH---------------------------------------HhhhhhhHHHHHHHHHHHHh
Confidence 988888899999999864210 01234456788899999999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~~~ 323 (555)
++. +..++.+..||-|+||||+|||||+++|++++|||||||||..+...+.+++ ++.|.+||+.||+++++..+|
T Consensus 122 ~l~-~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealC 200 (245)
T COG4555 122 QLL-EYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALC 200 (245)
T ss_pred ChH-HHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhh
Confidence 996 5779999999999999999999999999999999999999999999888876 456999999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++|++|.+ ++.|+..+..
T Consensus 201 Drvivlh~Gev-v~~gs~~~l~ 221 (245)
T COG4555 201 DRVIVLHKGEV-VLEGSIEALD 221 (245)
T ss_pred heEEEEecCcE-EEcCCHHHHH
Confidence 99999999986 6788766543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=382.72 Aligned_cols=208 Identities=26% Similarity=0.401 Sum_probs=180.9
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEe
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~ 167 (555)
+|+++||+++| +++.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 58999999999 77889999999999999999999999999999999999999999999999853 2599999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++++||.+|+..+... ......+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~g 123 (356)
T PRK11650 83 QNYALYPHMSVRENMAYGLKI---------------------------------------RGMPKAEIEERVAEAARILE 123 (356)
T ss_pred CCccccCCCCHHHHHHhHHhh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112233456788999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|+ +.|.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~ 202 (356)
T PRK11650 124 LE-PLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLA 202 (356)
T ss_pred Ch-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhC
Confidence 96 57899999999999999999999999999999999999999999998887764 35899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|...+++
T Consensus 203 D~i~vl~~G~i~-~~g~~~~~~ 223 (356)
T PRK11650 203 DRVVVMNGGVAE-QIGTPVEVY 223 (356)
T ss_pred CEEEEEeCCEEE-EECCHHHHH
Confidence 999999999974 557766554
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-45 Score=380.84 Aligned_cols=210 Identities=24% Similarity=0.385 Sum_probs=182.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFL 166 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v 166 (555)
.++|+++||++.|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.+ ..||||
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 356999999999998889999999999999999999999999999999999999999999999853 369999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++++||.+|+..+... ......+...++.++++.+
T Consensus 84 fQ~~~lfp~~tv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 124 (351)
T PRK11432 84 FQSYALFPHMSLGENVGYGLKM---------------------------------------LGVPKEERKQRVKEALELV 124 (351)
T ss_pred eCCcccCCCCCHHHHHHHHHhH---------------------------------------cCCCHHHHHHHHHHHHHHc
Confidence 9999999999999998653210 0011223456788899999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
|+. .+.++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.+.|+|+||||++++..+
T Consensus 125 gl~-~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~l 203 (351)
T PRK11432 125 DLA-GFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAV 203 (351)
T ss_pred CCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHh
Confidence 996 46799999999999999999999999999999999999999999999888764 3589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. ..|+.++++
T Consensus 204 aD~i~vm~~G~i~-~~g~~~~~~ 225 (351)
T PRK11432 204 SDTVIVMNKGKIM-QIGSPQELY 225 (351)
T ss_pred CCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999975 456665543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-45 Score=357.95 Aligned_cols=198 Identities=32% Similarity=0.470 Sum_probs=170.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 478999999988889999999999999999999999999999999999999999999998753 259999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . .........++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03259 81 YALFPHLTVAENIAFGLKL---------------R------------------------GVPKAEIRARVRELLELVGLE 121 (213)
T ss_pred hhhccCCcHHHHHHhHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 9887888999998532100 0 000111234567788899996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+||+
T Consensus 122 -~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 200 (213)
T cd03259 122 -GLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200 (213)
T ss_pred -hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCE
Confidence 456888999999999999999999999999999999999999999999998754 488999999999999999999
Q ss_pred eEEecCCeEe
Q 008750 326 IVETEMGVSR 335 (555)
Q Consensus 326 i~~l~~G~~~ 335 (555)
|++|++|++.
T Consensus 201 v~~l~~G~i~ 210 (213)
T cd03259 201 IAVMNEGRIV 210 (213)
T ss_pred EEEEECCEEE
Confidence 9999999874
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-45 Score=381.05 Aligned_cols=209 Identities=29% Similarity=0.454 Sum_probs=181.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEe
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLS 167 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~ 167 (555)
.+|+++||+++|++..+|+|+||+|++||+++|+|||||||||||++|+|+++|++|+|.++|.+ ..|||++
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~ 82 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVF 82 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 45999999999998889999999999999999999999999999999999999999999999853 2599999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++++||.+|+..+... ...+..+...++.++++.+|
T Consensus 83 Q~~~lfp~~tv~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~l~ 123 (353)
T TIGR03265 83 QSYALFPNLTVADNIAYGLKN---------------------------------------RGMGRAEVAERVAELLDLVG 123 (353)
T ss_pred CCcccCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 00112234567888999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~ 323 (555)
|. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.+.|+|+||||++++..+|
T Consensus 124 L~-~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~ 202 (353)
T TIGR03265 124 LP-GSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMA 202 (353)
T ss_pred CC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhC
Confidence 96 47799999999999999999999999999999999999999999999888774 35899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|+..+++
T Consensus 203 d~i~vl~~G~i~-~~g~~~~~~ 223 (353)
T TIGR03265 203 DRIVVMNHGVIE-QVGTPQEIY 223 (353)
T ss_pred CEEEEEECCEEE-EEcCHHHHH
Confidence 999999999974 456655544
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-45 Score=388.41 Aligned_cols=242 Identities=24% Similarity=0.370 Sum_probs=203.1
Q ss_pred hhHHHHhccCcchhhhhhcccccCCCCCC----------CCCccEEEEeEEEEeCC-----------ceeeeeeeEEEEC
Q 008750 64 SDVESLFSSSADEFENKKYSNKQSNTGAS----------SISSGVKLENISKSYKG-----------VTVLKDVTWEVKK 122 (555)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~i~l~nls~~y~~-----------~~vL~~vsl~i~~ 122 (555)
+..++||..|.++|++......|...... ...+.++++||++.|.. ..+++||||+|.+
T Consensus 237 G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~ 316 (539)
T COG1123 237 GPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLRE 316 (539)
T ss_pred cCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecC
Confidence 78899999999999999877765542211 15678999999999962 2589999999999
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------ceEEEEecccc--cCcCccHHHHHHHhhHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAFLSQEFE--VSMSRTVREEFMSAFKE 188 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~ 188 (555)
||++||||+||||||||.|+|+|+++|++|+|.++|.+ .++-+++|+|+ +.+.+||.+++..++.-
T Consensus 317 GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~ 396 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRI 396 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhh
Confidence 99999999999999999999999999999999998864 25788899874 66888999987644210
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (555)
. ......+..+++.++++.+|++...++|+|++|||||||||
T Consensus 397 ~--------------------------------------~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGGQrQRv 438 (539)
T COG1123 397 H--------------------------------------GGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRV 438 (539)
T ss_pred h--------------------------------------cccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcchhHHH
Confidence 0 00112334567899999999998889999999999999999
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+|||||+.+|++||+|||||+||+.....+.++|+ +.|.|+||||||+.++.++||||++|.+|+++.. |+-++.
T Consensus 439 aIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~-G~~~~v 517 (539)
T COG1123 439 AIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE-GPTEKV 517 (539)
T ss_pred HHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe-CCHHHH
Confidence 99999999999999999999999998888887764 4699999999999999999999999999998654 554433
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=377.76 Aligned_cols=210 Identities=28% Similarity=0.441 Sum_probs=180.0
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEE
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIA 164 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig 164 (555)
...+|+++||+++|+++.+|+||||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+ ..||
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 3457999999999998899999999999999999999999999999999999999999999999854 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|+||++.+++.+|+.||+..... +. .....+...++.++++
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~ll~ 158 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGR---------------YF------------------------GMSTREIEAVIPSLLE 158 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHH
Confidence 99999998889999999753100 00 0011122345667888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~ 321 (555)
.+|++ ...++++.+|||||||||+||+||+.+|++|||||||++||+.++.+++++|++ .|.|||++||+++++.+
T Consensus 159 ~~~L~-~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~ 237 (340)
T PRK13536 159 FARLE-SKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAER 237 (340)
T ss_pred HcCCc-hhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHH
Confidence 89986 457889999999999999999999999999999999999999999999998754 58999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||+|++|++|++ .+.|..+++
T Consensus 238 ~~d~i~il~~G~i-~~~g~~~~l 259 (340)
T PRK13536 238 LCDRLCVLEAGRK-IAEGRPHAL 259 (340)
T ss_pred hCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999987 466766554
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-45 Score=370.27 Aligned_cols=207 Identities=30% Similarity=0.506 Sum_probs=179.3
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEE
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v 166 (555)
.++++||++.|+ ++.+|+||||+|++|+++||+||||||||||+|+|+|++.|++|+|.++|.+ .+|||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 478999999999 6999999999999999999999999999999999999999999999999843 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
||++.+++.+|++|++..... +. ........++++++++.+
T Consensus 84 ~~~~~~~~~lT~~e~l~~~~~---------------l~------------------------~~~~~~~~~~~~~~l~~~ 124 (293)
T COG1131 84 PQEPSLYPELTVRENLEFFAR---------------LY------------------------GLSKEEAEERIEELLELF 124 (293)
T ss_pred ccCCCCCccccHHHHHHHHHH---------------Hh------------------------CCChhHHHHHHHHHHHHc
Confidence 999999999999999753210 00 011123456789999999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CC-ceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~-~tvIiiSHd~~~l~~~ 322 (555)
||+. ..++++.+||+|||||+.||.||+.+|++|||||||+|||+.++..+.++|++ .+ .|||++||.++.+..+
T Consensus 125 ~L~~-~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~ 203 (293)
T COG1131 125 GLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEEL 203 (293)
T ss_pred CCch-hhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHh
Confidence 9986 44788999999999999999999999999999999999999999999998753 45 7999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|++|++|++ .+.|...++
T Consensus 204 ~d~v~il~~G~~-~~~g~~~~l 224 (293)
T COG1131 204 CDRVIILNDGKI-IAEGTPEEL 224 (293)
T ss_pred CCEEEEEeCCEE-EEeCCHHHH
Confidence 999999999997 455665553
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-45 Score=355.92 Aligned_cols=203 Identities=29% Similarity=0.485 Sum_probs=173.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|++++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 578999999988889999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+..... .. .........++.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03265 81 DLSVDDELTGWENLYIHAR---------------LY------------------------GVPGAERRERIDELLDFVGL 121 (220)
T ss_pred CccccccCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 9988788899998753210 00 00111234567788999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+||||||||++||+||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d 200 (220)
T cd03265 122 L-EAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCD 200 (220)
T ss_pred H-HHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 456889999999999999999999999999999999999999999999887753 48899999999999999999
Q ss_pred eeEEecCCeEeeccCCh
Q 008750 325 KIVETEMGVSRTYEGNY 341 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y 341 (555)
+|++|++|++. ..|+.
T Consensus 201 ~i~~l~~G~i~-~~~~~ 216 (220)
T cd03265 201 RVAIIDHGRII-AEGTP 216 (220)
T ss_pred EEEEEeCCEEE-EeCCh
Confidence 99999999975 34443
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=372.63 Aligned_cols=208 Identities=28% Similarity=0.432 Sum_probs=177.1
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v 166 (555)
.+|+++||+++|++.++|+||||+|++|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..+||+
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~v 82 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGVV 82 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEEE
Confidence 45899999999998889999999999999999999999999999999999999999999998753 359999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+..... .. .........++.++++.+
T Consensus 83 ~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~ll~~~ 123 (303)
T TIGR01288 83 PQFDNLDPEFTVRENLLVFGR---------------YF------------------------GMSTREIEAVIPSLLEFA 123 (303)
T ss_pred eccccCCcCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHC
Confidence 999988888999999752100 00 001112234566778888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+|
T Consensus 124 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~ 202 (303)
T TIGR01288 124 RLE-SKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLC 202 (303)
T ss_pred CCh-hHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhC
Confidence 986 456888999999999999999999999999999999999999999999998754 4899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+|++|++|++ .+.|+.++.
T Consensus 203 d~i~~l~~G~i-~~~g~~~~~ 222 (303)
T TIGR01288 203 DRLCVLESGRK-IAEGRPHAL 222 (303)
T ss_pred CEEEEEECCEE-EEEcCHHHH
Confidence 99999999997 456765543
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=378.16 Aligned_cols=212 Identities=27% Similarity=0.407 Sum_probs=182.9
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEE
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIA 164 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig 164 (555)
...++|+++||+++|++.++|+|+||+|++||+++|+|+|||||||||++|+|+++|++|+|.++|.+ ..||
T Consensus 10 ~~~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig 89 (375)
T PRK09452 10 SLSPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVN 89 (375)
T ss_pred cCCceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEE
Confidence 34567999999999998889999999999999999999999999999999999999999999999854 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++++||.+|+..++.. ......+...++.++++
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~~~~~l~ 130 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRM---------------------------------------QKTPAAEITPRVMEALR 130 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhh---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999999999999999998643210 00111233456788899
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||...+..+.+.|+ +.+.|+|+||||++++.
T Consensus 131 ~~~l~-~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~ 209 (375)
T PRK09452 131 MVQLE-EFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEAL 209 (375)
T ss_pred HcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99996 57799999999999999999999999999999999999999999999888774 35899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|...+++
T Consensus 210 ~laDri~vl~~G~i~-~~g~~~~i~ 233 (375)
T PRK09452 210 TMSDRIVVMRDGRIE-QDGTPREIY 233 (375)
T ss_pred HhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999975 456665544
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-43 Score=405.27 Aligned_cols=256 Identities=22% Similarity=0.346 Sum_probs=188.4
Q ss_pred hhhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEEC
Q 008750 46 TCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKK 122 (555)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~ 122 (555)
..++...+.-..+..++..+++|+-+....+......... .........++++|.+++.+. .+.|+||||+|++
T Consensus 470 r~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~~~~~---~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~ 546 (1381)
T KOG0054|consen 470 RFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPDSVER---SPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKK 546 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcccccc---CCCCCCCceEEEeeeeEecCCCCCcccccceeEEecC
Confidence 3466666666777888888888877765544322221111 111234566999999999854 3499999999999
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~ 202 (555)
|+.+||||+-|||||+||.+|.|.++..+|+|.++| .++|+||.|.+ ++.||+||++.+...+.+. .+++
T Consensus 547 G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g---siaYv~Q~pWI-~ngTvreNILFG~~~d~~r---Y~~V--- 616 (1381)
T KOG0054|consen 547 GQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG---SVAYVPQQPWI-QNGTVRENILFGSPYDEER---YDKV--- 616 (1381)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---eEEEeccccHh-hCCcHHHhhhcCccccHHH---HHHH---
Confidence 999999999999999999999999999999999987 49999999988 7899999998653211111 1111
Q ss_pred HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 008750 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLl 282 (555)
++... ++..+ ++|..-+. .+..+|. -+|||||||||+||||+.+++||+|
T Consensus 617 i~aC~---------------------------L~~Dl-e~Lp~GD~-TeIGErG-inLSGGQKqRIsLARAVY~~adIYL 666 (1381)
T KOG0054|consen 617 IKACA---------------------------LKKDL-EILPFGDL-TEIGERG-INLSGGQKQRISLARAVYQDADIYL 666 (1381)
T ss_pred HHHcc---------------------------CHhHH-hhcCCCCc-ceecCCc-cCCcHhHHHHHHHHHHHhccCCEEE
Confidence 11100 00000 01111111 1223444 4899999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 283 LDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 283 LDEPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||.|.|++|...-.++.+. ++. .++|+|+|||.++++.+ ||.|++|++|++ ...|+|++...
T Consensus 667 LDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~-ad~Iivl~~G~I-~~~Gty~el~~ 731 (1381)
T KOG0054|consen 667 LDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPH-ADQIIVLKDGKI-VESGTYEELLK 731 (1381)
T ss_pred EcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhh-CCEEEEecCCeE-ecccCHHHHHh
Confidence 9999999999988777664 332 47999999999999975 999999999997 57899998874
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=377.33 Aligned_cols=211 Identities=24% Similarity=0.413 Sum_probs=181.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEE
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAF 165 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~ 165 (555)
..++|+++||+++|++..+|+|+||+|++||+++|+|+|||||||||++|+|+++|++|+|.++|.+. .|||
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~ 95 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINM 95 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEE
Confidence 35679999999999888899999999999999999999999999999999999999999999998542 5999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++++||.||+..++.. ......+..+++.++++.
T Consensus 96 vfQ~~~lfp~ltv~eNi~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~ 136 (377)
T PRK11607 96 MFQSYALFPHMTVEQNIAFGLKQ---------------------------------------DKLPKAEIASRVNEMLGL 136 (377)
T ss_pred EeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHH
Confidence 99999999999999998643210 001122345577888999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~ 321 (555)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+..++.+.+.| ++.|.|+|+||||++++..
T Consensus 137 l~L~-~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~ 215 (377)
T PRK11607 137 VHMQ-EFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMT 215 (377)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHH
Confidence 9996 5678999999999999999999999999999999999999999998877544 4568999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||+|++|++|++. ..|...+++
T Consensus 216 laDri~vl~~G~i~-~~g~~~~~~ 238 (377)
T PRK11607 216 MAGRIAIMNRGKFV-QIGEPEEIY 238 (377)
T ss_pred hCCEEEEEeCCEEE-EEcCHHHHH
Confidence 99999999999875 456665544
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=376.99 Aligned_cols=209 Identities=25% Similarity=0.412 Sum_probs=181.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc--eEEEEcCCC--------ceEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS--GNVIKAKSN--------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~--G~I~~~g~~--------~~ig~v 166 (555)
.|+++||+++|++..+|+|+||+|.+||+++|+|||||||||||++|+|+++|++ |+|.++|.+ ..|||+
T Consensus 5 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~v 84 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALL 84 (362)
T ss_pred EEEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEE
Confidence 3899999999998889999999999999999999999999999999999999999 999998853 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++.+||++|+..++.. ......+...++.++++.+
T Consensus 85 fQ~~~l~p~~tv~enl~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~~~ 125 (362)
T TIGR03258 85 FQNYALFPHLKVEDNVAFGLRA---------------------------------------QKMPKADIAERVADALKLV 125 (362)
T ss_pred ECCcccCCCCcHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhc
Confidence 9999999999999998643210 0011223456788899999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CC-CceEEEEecCHHHHHh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ-DVPMVIISHDRAFLDQ 321 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~-~~tvIiiSHd~~~l~~ 321 (555)
||. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +. |.|+|+||||++++..
T Consensus 126 gL~-~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~ 204 (362)
T TIGR03258 126 GLG-DAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALT 204 (362)
T ss_pred CCC-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 996 56799999999999999999999999999999999999999999999988764 23 7899999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+||+|++|++|++. ..|...+++.
T Consensus 205 l~dri~vl~~G~i~-~~g~~~~~~~ 228 (362)
T TIGR03258 205 LADKAGIMKDGRLA-AHGEPQALYD 228 (362)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHHh
Confidence 99999999999974 5677665543
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=378.55 Aligned_cols=208 Identities=26% Similarity=0.420 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+++|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 4899999999998889999999999999999999999999999999999999999999998753 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.+|+...... . .....+...++.++++.+|+
T Consensus 83 ~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~lgL 123 (369)
T PRK11000 83 SYALYPHLSVAENMSFGLKL---------------A------------------------GAKKEEINQRVNQVAEVLQL 123 (369)
T ss_pred CcccCCCCCHHHHHHhHHhh---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99998899999998643210 0 01112234567888999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||++++..+||
T Consensus 124 ~-~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d 202 (369)
T PRK11000 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (369)
T ss_pred h-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCC
Confidence 6 567899999999999999999999999999999999999999999988877643 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..++.
T Consensus 203 ~i~vl~~G~i~-~~g~~~~i~ 222 (369)
T PRK11000 203 KIVVLDAGRVA-QVGKPLELY 222 (369)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 456665543
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-44 Score=351.92 Aligned_cols=199 Identities=30% Similarity=0.462 Sum_probs=171.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 478999999988889999999999999999999999999999999999999999999998743 259999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . ....+....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (213)
T cd03301 81 YALYPHMTVYDNIAFGLKL---------------R------------------------KVPKDEIDERVREVAELLQIE 121 (213)
T ss_pred hhhccCCCHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999997532100 0 001112344567788889986
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||++++..+||+
T Consensus 122 -~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~ 200 (213)
T cd03301 122 -HLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADR 200 (213)
T ss_pred -HHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCe
Confidence 456889999999999999999999999999999999999999999999988753 489999999999999999999
Q ss_pred eEEecCCeEee
Q 008750 326 IVETEMGVSRT 336 (555)
Q Consensus 326 i~~l~~G~~~~ 336 (555)
|++|++|+++.
T Consensus 201 i~~l~~g~~~~ 211 (213)
T cd03301 201 IAVMNDGQIQQ 211 (213)
T ss_pred EEEEECCEEEe
Confidence 99999998754
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-44 Score=374.68 Aligned_cols=212 Identities=29% Similarity=0.437 Sum_probs=180.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+++|++.++|+|+||+|.+||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|+|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 4899999999998889999999999999999999999999999999999999999999999854 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.+|+..+.... .. .......+..+++.++++.+|+
T Consensus 82 ~~~l~p~~tv~eni~~~~~~~--------------~~---------------------~~~~~~~~~~~~~~~~l~~~~L 126 (353)
T PRK10851 82 HYALFRHMTVFDNIAFGLTVL--------------PR---------------------RERPNAAAIKAKVTQLLEMVQL 126 (353)
T ss_pred CcccCCCCcHHHHHHhhhhhc--------------cc---------------------ccCCCHHHHHHHHHHHHHHcCC
Confidence 999989999999986432100 00 0001112345678889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|+ +.+.|+|+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~D 205 (353)
T PRK10851 127 A-HLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVAD 205 (353)
T ss_pred c-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56789999999999999999999999999999999999999999988887764 348999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|...+++
T Consensus 206 ri~vl~~G~i~-~~g~~~~i~ 225 (353)
T PRK10851 206 RVVVMSQGNIE-QAGTPDQVW 225 (353)
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 557766554
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=363.31 Aligned_cols=211 Identities=21% Similarity=0.320 Sum_probs=178.0
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------c
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~ 161 (555)
+++|+++||+++|+++++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 457999999999998889999999999999999999999999999999999999999999998742 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..||.+|+...+... . .........++.+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~---------------~-----------------------~~~~~~~~~~~~~ 126 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREH---------------T-----------------------QLPAPLLHSTVMM 126 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHc---------------c-----------------------CCCHHHHHHHHHH
Confidence 4899999998877889999985421100 0 0001112345667
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 127 ~l~~~gl~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~ 205 (269)
T PRK11831 127 KLEAVGLR-GAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVP 205 (269)
T ss_pred HHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHH
Confidence 88889996 467888999999999999999999999999999999999999999998887753 3789999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+||+|++|++|++. +.|..+++.
T Consensus 206 ~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 232 (269)
T PRK11831 206 EVLSIADHAYIVADKKIV-AHGSAQALQ 232 (269)
T ss_pred HHHHhhCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999874 567666543
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-44 Score=350.87 Aligned_cols=192 Identities=31% Similarity=0.554 Sum_probs=166.2
Q ss_pred EEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEEEEeccc
Q 008750 99 KLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQEF 170 (555)
Q Consensus 99 ~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig~v~Q~~ 170 (555)
+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36899999987 7899999999999999999999999999999999999999999999998653 599999997
Q ss_pred cc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 171 EV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 171 ~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
.. ++..|+.||+...... . .....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~--~~~~~~~~~~l~~~~l~ 117 (205)
T cd03226 81 DYQLFTDSVREELLLGLKE-----------------------------------------L--DAGNEQAETVLKDLDLY 117 (205)
T ss_pred hhhhhhccHHHHHhhhhhh-----------------------------------------c--CccHHHHHHHHHHcCCc
Confidence 43 3567999987532100 0 01124567788999996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|++|||++++..+||+|
T Consensus 118 -~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i 196 (205)
T cd03226 118 -ALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRV 196 (205)
T ss_pred -hhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEE
Confidence 457889999999999999999999999999999999999999999999988753 4889999999999999999999
Q ss_pred EEecCCeE
Q 008750 327 VETEMGVS 334 (555)
Q Consensus 327 ~~l~~G~~ 334 (555)
++|++|++
T Consensus 197 ~~l~~G~i 204 (205)
T cd03226 197 LLLANGAI 204 (205)
T ss_pred EEEECCEE
Confidence 99999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=402.53 Aligned_cols=252 Identities=24% Similarity=0.396 Sum_probs=195.4
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc--eeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~--~vL~~vsl~i~~Ge~ 125 (555)
+++.....+++++.+..-++++++.|.|....+.....+ ...+.|+++||+|+|+.. ++|+|+||+|++||+
T Consensus 428 ~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~~~~~~------~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~ 501 (709)
T COG2274 428 RLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLP------KLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEK 501 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccccccccccccc------ccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCE
Confidence 556666667777788888888899888765433222223 334559999999999654 699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH----HHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (555)
+||||+||||||||+|+|+|+++|++|+|.+||.+. .||||+|++.+ |+.|++||+..+..+ +..
T Consensus 502 vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~L-f~gSI~eNi~l~~p~~~~e~i~ 580 (709)
T COG2274 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFL-FSGSIRENIALGNPEATDEEII 580 (709)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchh-hcCcHHHHHhcCCCCCCHHHHH
Confidence 999999999999999999999999999999999763 69999999877 789999999764311 111
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH
Q 008750 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
.+.....+ .+.+..+- +|++.... ..-..||||||||++||
T Consensus 581 ~A~~~ag~------------------------------------~~fI~~lP--~gy~t~v~-E~G~~LSGGQrQrlalA 621 (709)
T COG2274 581 EAAQLAGA------------------------------------HEFIENLP--MGYDTPVG-EGGANLSGGQRQRLALA 621 (709)
T ss_pred HHHHHhCc------------------------------------HHHHHhcc--cccccccc-cCCCCCCHHHHHHHHHH
Confidence 11111111 11111111 13322222 22358999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+.+|+|||||||||+||+.+++.+.+.|.+ .|+|+|+|||+++.+. .||||++|++|++ ..+|+.++.+..
T Consensus 622 RaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~-~adrIiVl~~Gki-v~~gs~~ell~~ 697 (709)
T COG2274 622 RALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR-SADRIIVLDQGKI-VEQGSHEELLAQ 697 (709)
T ss_pred HHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhh-hccEEEEccCCce-eccCCHHHHHHh
Confidence 999999999999999999999999999999876 4699999999999996 5999999999997 567887776654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-44 Score=357.00 Aligned_cols=211 Identities=28% Similarity=0.443 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+++|+++++|+||||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 4899999999988889999999999999999999999999999999999999999999998743 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+...... .... ..........++.++++.+|+
T Consensus 82 ~~~~~~~~tv~e~l~~~~~~---------------~~~~--------------------~~~~~~~~~~~~~~~l~~~~l 126 (239)
T cd03296 82 HYALFRHMTVFDNVAFGLRV---------------KPRS--------------------ERPPEAEIRAKVHELLKLVQL 126 (239)
T ss_pred CCcccCCCCHHHHHhhhhhh---------------cccc--------------------ccCCHHHHHHHHHHHHHHcCC
Confidence 99887788999998532100 0000 000011123456778888998
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .|.|||+||||++++..+||
T Consensus 127 ~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d 205 (239)
T cd03296 127 D-WLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVAD 205 (239)
T ss_pred h-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999988753 37899999999999999999
Q ss_pred eeEEecCCeEeeccCChHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~ 344 (555)
+|++|++|++. ..|..+++
T Consensus 206 ~i~~l~~G~i~-~~~~~~~~ 224 (239)
T cd03296 206 RVVVMNKGRIE-QVGTPDEV 224 (239)
T ss_pred EEEEEECCeEE-EecCHHHH
Confidence 99999999874 45665543
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-44 Score=353.44 Aligned_cols=195 Identities=30% Similarity=0.492 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 478999999976 689999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++..||.+|+...... . .......++++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLL---------------A------------------------GVPKKERRERA 121 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhh---------------c------------------------CCCHHHHHHHH
Confidence 2599999999887888999997532100 0 00011223467
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||
T Consensus 122 ~~~l~~~~l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~ 200 (218)
T cd03255 122 EELLERVGLGD-RLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHD 200 (218)
T ss_pred HHHHHHcCCch-hhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 78889999963 45888999999999999999999999999999999999999999999988753 47899999999
Q ss_pred HHHHHhhcceeEEecCCe
Q 008750 316 RAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~ 333 (555)
++++. +||+|++|++|+
T Consensus 201 ~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 201 PELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHh-hhcEEEEeeCCc
Confidence 99997 999999999986
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=351.97 Aligned_cols=198 Identities=31% Similarity=0.429 Sum_probs=169.7
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEec
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q 168 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 478999999987 789999999999999999999999999999999999999999999998854 36999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+...... . ....+....++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l 121 (220)
T cd03293 81 QDALLPWLTVLDNVALGLEL---------------Q------------------------GVPKAEARERAEELLELVGL 121 (220)
T ss_pred ccccccCCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99887778999997532100 0 00111223457778899999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||
T Consensus 122 ~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 200 (220)
T cd03293 122 S-GFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLAD 200 (220)
T ss_pred h-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCC
Confidence 6 456888999999999999999999999999999999999999999999988753 47899999999999999999
Q ss_pred eeEEec--CCeEe
Q 008750 325 KIVETE--MGVSR 335 (555)
Q Consensus 325 ri~~l~--~G~~~ 335 (555)
+|++|+ +|++.
T Consensus 201 ~i~~l~~~~G~i~ 213 (220)
T cd03293 201 RVVVLSARPGRIV 213 (220)
T ss_pred EEEEEECCCCEEE
Confidence 999999 68863
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=351.22 Aligned_cols=197 Identities=29% Similarity=0.504 Sum_probs=169.2
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ce
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ 162 (555)
+|+++|++++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRR 80 (214)
T ss_pred CEEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhh
Confidence 47899999999 46789999999999999999999999999999999999999999999998743 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++..|+.+|+...... . .......+.++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 121 (214)
T TIGR02673 81 IGVVFQDFRLLPDRTVYENVALPLEV---------------R------------------------GKKEREIQRRVGAA 121 (214)
T ss_pred eEEEecChhhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHH
Confidence 89999999887788999997532100 0 00111224467788
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~ 200 (214)
T TIGR02673 122 LRQVGLE-HKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLV 200 (214)
T ss_pred HHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 8999996 456888999999999999999999999999999999999999999999988754 589999999999999
Q ss_pred HhhcceeEEecCCe
Q 008750 320 DQLCTKIVETEMGV 333 (555)
Q Consensus 320 ~~~~dri~~l~~G~ 333 (555)
..+||+|++|++|+
T Consensus 201 ~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 201 DRVAHRVIILDDGR 214 (214)
T ss_pred HHhcCEEEEecCCC
Confidence 99999999999874
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-44 Score=366.79 Aligned_cols=207 Identities=25% Similarity=0.492 Sum_probs=179.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
.++++|++++|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .+||+|
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 38999999999988899999999999999999999999999999999999999999999988542 599999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++.+|+.||+..... + ..........++.++++.+|
T Consensus 82 q~~~l~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~g 122 (301)
T TIGR03522 82 EHNPLYLDMYVREYLQFIAG---------------I------------------------YGMKGQLLKQRVEEMIELVG 122 (301)
T ss_pred CCCCCCCCCcHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHHHHCC
Confidence 99998888999999753110 0 00111223456778899999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcce
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dr 325 (555)
+.+ ..++++..||||||||++||+||+.+|++|||||||++||+.+++++++.+++ .+.|||++||+++++.++|||
T Consensus 123 l~~-~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~ 201 (301)
T TIGR03522 123 LRP-EQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDR 201 (301)
T ss_pred Cch-HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCE
Confidence 974 56899999999999999999999999999999999999999999999998764 378999999999999999999
Q ss_pred eEEecCCeEeeccCChHHH
Q 008750 326 IVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~ 344 (555)
|++|++|++. +.|+.+++
T Consensus 202 i~~l~~G~i~-~~g~~~~~ 219 (301)
T TIGR03522 202 VIIINKGKIV-ADKKLDEL 219 (301)
T ss_pred EEEEECCEEE-EeCCHHHH
Confidence 9999999974 67877654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=373.25 Aligned_cols=207 Identities=29% Similarity=0.487 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+|+++||+|+|+ ++++|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 80 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKA 80 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHH
Confidence 489999999997 3679999999999999999999999999999999999999999999998743
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..|||++|++.+++..||.+|+...... . .........++
T Consensus 81 ~~~ig~v~q~~~l~~~~tv~eni~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (343)
T PRK11153 81 RRQIGMIFQHFNLLSSRTVFDNVALPLEL---------------A------------------------GTPKAEIKARV 121 (343)
T ss_pred hcCEEEEeCCCccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2599999999988889999998532100 0 00111234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 122 ~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~ 200 (343)
T PRK11153 122 TELLELVGLS-DKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHE 200 (343)
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7889999996 467889999999999999999999999999999999999999999999988753 38999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||+|++|++|++. +.|...++
T Consensus 201 ~~~i~~~~d~v~~l~~G~i~-~~g~~~~~ 228 (343)
T PRK11153 201 MDVVKRICDRVAVIDAGRLV-EQGTVSEV 228 (343)
T ss_pred HHHHHHhCCEEEEEECCEEE-EEcCHHHH
Confidence 99999999999999999974 55665544
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=348.71 Aligned_cols=198 Identities=28% Similarity=0.523 Sum_probs=171.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------eEEEEecccc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEFE 171 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------~ig~v~Q~~~ 171 (555)
|+++|+++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~~ 80 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERG 80 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCCc
Confidence 4789999999888899999999999999999999999999999999999999999999998643 5999999998
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+++..|+.+|+..... .. ..........+.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~ 120 (210)
T cd03269 81 LYPKMKVIDQLVYLAQ---------------LK------------------------GLKKEEARRRIDEWLERLELS-E 120 (210)
T ss_pred CCcCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHHcCCh-H
Confidence 8788899999753210 00 001112344677788899986 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++++.+||||||||++||+||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||||++++..+||++++
T Consensus 121 ~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~ 200 (210)
T cd03269 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLL 200 (210)
T ss_pred HHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEE
Confidence 56788999999999999999999999999999999999999999999988753 478999999999999999999999
Q ss_pred ecCCeEe
Q 008750 329 TEMGVSR 335 (555)
Q Consensus 329 l~~G~~~ 335 (555)
|++|++.
T Consensus 201 l~~g~i~ 207 (210)
T cd03269 201 LNKGRAV 207 (210)
T ss_pred EeCCEEE
Confidence 9999874
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=358.01 Aligned_cols=212 Identities=24% Similarity=0.414 Sum_probs=179.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------- 160 (555)
+..|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred CccEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 345999999999998899999999999999999999999999999999999999999999998742
Q ss_pred ---------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ---------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..++|++|++.+++..|+.||+...... +. ...
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~--------------~~------------------------~~~ 124 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLS 124 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHH--------------hC------------------------CCC
Confidence 2489999999887788999998532100 00 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.+....++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|
T Consensus 125 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~t 204 (257)
T PRK10619 125 KQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 204 (257)
T ss_pred HHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1223456778899999975444788999999999999999999999999999999999999999999988653 5899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+||||++++..+||||++|++|+++ +.|+++++.
T Consensus 205 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 240 (257)
T PRK10619 205 MVVVTHEMGFARHVSSHVIFLHQGKIE-EEGAPEQLF 240 (257)
T ss_pred EEEEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHhh
Confidence 999999999999999999999999974 567777654
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=359.12 Aligned_cols=199 Identities=24% Similarity=0.397 Sum_probs=172.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEecc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQE 169 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~ 169 (555)
.+.|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 10 ~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q~ 89 (257)
T PRK11247 10 GTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQD 89 (257)
T ss_pred CCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEecC
Confidence 355999999999988889999999999999999999999999999999999999999999998753 359999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..||.+|+...+.. ....++.++++.+|+.
T Consensus 90 ~~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~l~~~gl~ 124 (257)
T PRK11247 90 ARLLPWKKVIDNVGLGLKG---------------------------------------------QWRDAALQALAAVGLA 124 (257)
T ss_pred ccCCCCCcHHHHHHhcccc---------------------------------------------hHHHHHHHHHHHcCCh
Confidence 9887778999997532100 0123456678888886
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+
T Consensus 125 -~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~ 203 (257)
T PRK11247 125 -DRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADR 203 (257)
T ss_pred -hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCE
Confidence 456888999999999999999999999999999999999999999999887743 489999999999999999999
Q ss_pred eEEecCCeEeeccCC
Q 008750 326 IVETEMGVSRTYEGN 340 (555)
Q Consensus 326 i~~l~~G~~~~~~G~ 340 (555)
|++|++|++. +.|+
T Consensus 204 i~~l~~G~i~-~~~~ 217 (257)
T PRK11247 204 VLLIEEGKIG-LDLT 217 (257)
T ss_pred EEEEECCEEE-eecc
Confidence 9999999874 3443
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=351.35 Aligned_cols=199 Identities=31% Similarity=0.490 Sum_probs=171.6
Q ss_pred cEEEEeEEEEeCCc----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceE
Q 008750 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~i 163 (555)
+|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i 80 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRL 80 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhE
Confidence 37899999999876 79999999999999999999999999999999999999999999998753 259
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..||.+|+..... . ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l 121 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAG---------------L------------------------YGLKGDELTARLEELA 121 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHH---------------H------------------------cCCCHHHHHHHHHHHH
Confidence 999999988777899999753210 0 0001112345677888
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~ 200 (218)
T cd03266 122 DRLGME-ELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVE 200 (218)
T ss_pred HHcCCH-HHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999996 456888999999999999999999999999999999999999999999988753 4889999999999999
Q ss_pred hhcceeEEecCCeEe
Q 008750 321 QLCTKIVETEMGVSR 335 (555)
Q Consensus 321 ~~~dri~~l~~G~~~ 335 (555)
.+||+|++|++|++.
T Consensus 201 ~~~d~i~~l~~G~i~ 215 (218)
T cd03266 201 RLCDRVVVLHRGRVV 215 (218)
T ss_pred HhcCEEEEEECCEEe
Confidence 999999999999874
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-44 Score=355.64 Aligned_cols=216 Identities=28% Similarity=0.430 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 478999999988889999999999999999999999999999999999999999999998743 249999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+....... . ... + .. ............++.++++.+
T Consensus 81 ~q~~~l~~~~tv~~~l~~~~~~~---------------~-~~~---~---~~-------~~~~~~~~~~~~~~~~~l~~~ 131 (236)
T cd03219 81 FQIPRLFPELTVLENVMVAAQAR---------------T-GSG---L---LL-------ARARREEREARERAEELLERV 131 (236)
T ss_pred ecccccccCCCHHHHHHHHHhhc---------------c-ccc---c---cc-------ccccccHHHHHHHHHHHHHHc
Confidence 99998888899999985431100 0 000 0 00 000000112344677889999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++..+|
T Consensus 132 ~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~ 210 (236)
T cd03219 132 GLA-DLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLA 210 (236)
T ss_pred Ccc-chhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhC
Confidence 996 456889999999999999999999999999999999999999999999988753 5889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+|++|++|++. +.|+.+++
T Consensus 211 d~i~~l~~G~i~-~~~~~~~~ 230 (236)
T cd03219 211 DRVTVLDQGRVI-AEGTPDEV 230 (236)
T ss_pred CEEEEEeCCEEE-eecCHHHh
Confidence 999999999874 55665543
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-44 Score=366.32 Aligned_cols=209 Identities=22% Similarity=0.346 Sum_probs=175.2
Q ss_pred cEEEEeEEEEeCCc-----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
.|+++||+++|++. ++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 38999999999642 59999999999999999999999999999999999999999999997531
Q ss_pred -----------------------ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHH
Q 008750 161 -----------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL 216 (555)
Q Consensus 161 -----------------------~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (555)
..||||+|++. .++..||.+|+......
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~---------------------------- 133 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVS---------------------------- 133 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHH----------------------------
Confidence 14899999863 34567999998532100
Q ss_pred HHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHH
Q 008750 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE 296 (555)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~ 296 (555)
......+..+++.++++.+||.....++++.+|||||||||+||+||+.+|++|||||||++||+.++.
T Consensus 134 -----------~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~ 202 (305)
T PRK13651 134 -----------MGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVK 202 (305)
T ss_pred -----------cCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHH
Confidence 001122345567888999999756789999999999999999999999999999999999999999999
Q ss_pred HHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 297 WLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 297 ~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+.+.|+ +.|.|||+||||++++..+||||++|++|++ .+.|...++.
T Consensus 203 ~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~~G~i-~~~g~~~~~~ 253 (305)
T PRK13651 203 EILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKI-IKDGDTYDIL 253 (305)
T ss_pred HHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEECCEE-EEECCHHHHh
Confidence 9988774 3589999999999999999999999999986 4567665543
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=364.29 Aligned_cols=208 Identities=22% Similarity=0.330 Sum_probs=175.5
Q ss_pred EEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 98 i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
|+++||+++|++ .++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999964 4699999999999999999999999999999999999999999999998532
Q ss_pred ---eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ---KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ---~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.|||++|++. .++..||.+|+...... ......+..+
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~ 123 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMN---------------------------------------FGVSEEDAKQ 123 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHH---------------------------------------cCCCHHHHHH
Confidence 4899999973 23457999998532100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+||.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiit 203 (290)
T PRK13634 124 KAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVT 203 (290)
T ss_pred HHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 6788899999975567899999999999999999999999999999999999999999999887743 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||||++|++|++ .+.|+..++.
T Consensus 204 Hd~~~~~~~~drv~~l~~G~i-~~~g~~~~~~ 234 (290)
T PRK13634 204 HSMEDAARYADQIVVMHKGTV-FLQGTPREIF 234 (290)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999997 4667766654
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-44 Score=368.35 Aligned_cols=214 Identities=21% Similarity=0.369 Sum_probs=179.3
Q ss_pred CCccEEEEeEEEEeCC-------------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 94 ISSGVKLENISKSYKG-------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~-------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
.+++|+++||+++|+. ..+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 3567999999999952 469999999999999999999999999999999999999999999998853
Q ss_pred -------------ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Q 008750 161 -------------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225 (555)
Q Consensus 161 -------------~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (555)
..|+||+|++ .+++.+||.+|+....... .
T Consensus 85 i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~--------------~--------------------- 129 (331)
T PRK15079 85 LLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTY--------------H--------------------- 129 (331)
T ss_pred CCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHh--------------c---------------------
Confidence 2599999998 4667889999985431100 0
Q ss_pred HHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-
Q 008750 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK- 304 (555)
Q Consensus 226 ~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~- 304 (555)
..+...+...++.++++.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++
T Consensus 130 --~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l 207 (331)
T PRK15079 130 --PKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQL 207 (331)
T ss_pred --cCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 00112233456778899999965677999999999999999999999999999999999999999999988887743
Q ss_pred ---CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 ---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+.|+||||||+.++.++||+|++|.+|+++ ..|..+++.
T Consensus 208 ~~~~~~til~iTHdl~~~~~~~dri~vl~~G~iv-e~g~~~~i~ 250 (331)
T PRK15079 208 QREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAV-ELGTYDEVY 250 (331)
T ss_pred HHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 4899999999999999999999999999874 457665544
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-44 Score=346.70 Aligned_cols=194 Identities=32% Similarity=0.477 Sum_probs=169.6
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~ 169 (555)
|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888899999999999999999999999999999999999999999999998643 59999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..||.+|+...... .. ....++.++++.+|+.
T Consensus 81 ~~~~~~~tv~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~~~l~ 117 (208)
T cd03268 81 PGFYPNLTARENLRLLARL-----------------------------------------LG--IRKKRIDEVLDVVGLK 117 (208)
T ss_pred CccCccCcHHHHHHHHHHh-----------------------------------------cC--CcHHHHHHHHHHcCCH
Confidence 9888889999997532100 00 0123466778888885
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|+||||++++..+||++
T Consensus 118 -~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v 196 (208)
T cd03268 118 -DSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRI 196 (208)
T ss_pred -HHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEE
Confidence 456788999999999999999999999999999999999999999999988753 5899999999999999999999
Q ss_pred EEecCCeEe
Q 008750 327 VETEMGVSR 335 (555)
Q Consensus 327 ~~l~~G~~~ 335 (555)
++|++|++.
T Consensus 197 ~~l~~g~i~ 205 (208)
T cd03268 197 GIINKGKLI 205 (208)
T ss_pred EEEECCEEE
Confidence 999999864
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=363.15 Aligned_cols=210 Identities=22% Similarity=0.297 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+|+++||+|+|++ +.+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 4899999999963 2599999999999999999999999999999999999999999999998532
Q ss_pred ----eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 ----~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.||||+|++. .++..||.+|+...... ......+..
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~ 121 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQN---------------------------------------FGIPKEKAE 121 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHH---------------------------------------cCCCHHHHH
Confidence 4899999973 33457999988532100 001112334
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|+ +.|.|||+||
T Consensus 122 ~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vt 201 (288)
T PRK13643 122 KIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVT 201 (288)
T ss_pred HHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 5678889999996556789999999999999999999999999999999999999999999988774 3589999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||||++|++|++ .+.|..+++..
T Consensus 202 Hd~~~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 233 (288)
T PRK13643 202 HLMDDVADYADYVYLLEKGHI-ISCGTPSDVFQ 233 (288)
T ss_pred cCHHHHHHhCCEEEEEECCEE-EEECCHHHHHc
Confidence 999999999999999999997 46788777654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-44 Score=355.35 Aligned_cols=209 Identities=26% Similarity=0.448 Sum_probs=176.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------------- 160 (555)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 5899999999988889999999999999999999999999999999999999999999988632
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++..|+.+|+...... .. .........+
T Consensus 83 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~ 124 (250)
T PRK11264 83 LRQHVGFVFQNFNLFPHRTVLENIIEGPVI--------------VK------------------------GEPKEEATAR 124 (250)
T ss_pred hhhhEEEEecCcccCCCCCHHHHHHHHHHH--------------hc------------------------CCCHHHHHHH
Confidence 2589999999887788999998532100 00 0011122345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecC
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd 315 (555)
+.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|. +.+.|||+||||
T Consensus 125 ~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~ 203 (250)
T PRK11264 125 ARELLAKVGLA-GKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHE 203 (250)
T ss_pred HHHHHHHcCCc-chhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 67788889996 45688899999999999999999999999999999999999999999998775 358999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++..+||+|++|++|++. +.|+.+++.
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 232 (250)
T PRK11264 204 MSFARDVADRAIFMDQGRIV-EQGPAKALF 232 (250)
T ss_pred HHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999874 567766553
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=357.54 Aligned_cols=199 Identities=24% Similarity=0.339 Sum_probs=171.0
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEecccc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFE 171 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q~~~ 171 (555)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.
T Consensus 1 ml~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~ 80 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNEG 80 (255)
T ss_pred CEEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCCc
Confidence 47999999999888899999999999999999999999999999999999999999999987542 4899999998
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+++..||.+|+..... .. .........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~ 120 (255)
T PRK11248 81 LLPWRNVQDNVAFGLQ---------------LA------------------------GVEKMQRLEIAHQMLKKVGLE-G 120 (255)
T ss_pred cCCCCcHHHHHHhHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 8778899999753210 00 001112234677889999996 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
..++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++..+||+|+
T Consensus 121 ~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~ 200 (255)
T PRK11248 121 AEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELV 200 (255)
T ss_pred HhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEE
Confidence 56888999999999999999999999999999999999999999999988754 38999999999999999999999
Q ss_pred Eec--CCeEe
Q 008750 328 ETE--MGVSR 335 (555)
Q Consensus 328 ~l~--~G~~~ 335 (555)
+|+ +|++.
T Consensus 201 ~l~~~~G~i~ 210 (255)
T PRK11248 201 LLSPGPGRVV 210 (255)
T ss_pred EEeCCCcEEE
Confidence 998 47763
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-44 Score=353.17 Aligned_cols=209 Identities=23% Similarity=0.419 Sum_probs=177.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig 164 (555)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 1 ~l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred CEEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 37899999999888899999999999999999999999999999999999999999999987431 489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+...... .. .........++.++++
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~ 122 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLR--------------VR------------------------GASKEEAEKQARELLA 122 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHH
Confidence 999999887888999997532100 00 0011123345678888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~ 321 (555)
.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|+ +.+.|||+||||++++..
T Consensus 123 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 201 (240)
T PRK09493 123 KVGLA-ERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEK 201 (240)
T ss_pred HcCCh-HHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 99996 45688999999999999999999999999999999999999999999998874 358999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||+|++|++|++. +.|++.++.
T Consensus 202 ~~d~i~~l~~G~i~-~~g~~~~~~ 224 (240)
T PRK09493 202 VASRLIFIDKGRIA-EDGDPQVLI 224 (240)
T ss_pred hCCEEEEEECCEEE-eeCCHHHHh
Confidence 99999999999974 567776654
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=352.32 Aligned_cols=206 Identities=28% Similarity=0.423 Sum_probs=174.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||+++|+++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 478999999998889999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+...... . .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (232)
T cd03218 81 PQEASIFRKLTVEENILAVLEI---------------R------------------------GLSKKEREEKLEELLEEF 121 (232)
T ss_pred cCCccccccCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999887888999997532100 0 000112234567788889
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|+ +.+.|||++|||++++..+|
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~ 200 (232)
T cd03218 122 HIT-HLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSIT 200 (232)
T ss_pred CCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhC
Confidence 986 45688899999999999999999999999999999999999999999988774 35889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+|++|++|++. +.|+.+++
T Consensus 201 d~i~~l~~G~i~-~~~~~~~~ 220 (232)
T cd03218 201 DRAYIIYEGKVL-AEGTPEEI 220 (232)
T ss_pred CEEEEEECCeEE-EEeCHHHh
Confidence 999999999874 56666554
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=349.26 Aligned_cols=204 Identities=28% Similarity=0.440 Sum_probs=172.6
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v 166 (555)
|+++||++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 578999999976 7899999999999999999999999999999999999999999999988542 48999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+...... . .........++.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~ 121 (220)
T cd03263 81 PQFDALFDELTVREHLRFYARL---------------K------------------------GLPKSEIKEEVELLLRVL 121 (220)
T ss_pred cCcCCccccCCHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHc
Confidence 9999887789999987532100 0 001112234567788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~d 324 (555)
|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+.+.+.+.|++ .+.|||++|||++++..+||
T Consensus 122 ~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d 200 (220)
T cd03263 122 GLT-DKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCD 200 (220)
T ss_pred CCH-HHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcC
Confidence 986 456788999999999999999999999999999999999999999999998854 35899999999999999999
Q ss_pred eeEEecCCeEeeccCChH
Q 008750 325 KIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~ 342 (555)
+|++|++|++. ..|+.+
T Consensus 201 ~i~~l~~g~i~-~~~~~~ 217 (220)
T cd03263 201 RIAIMSDGKLR-CIGSPQ 217 (220)
T ss_pred EEEEEECCEEE-ecCCHH
Confidence 99999999875 445443
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=384.45 Aligned_cols=255 Identities=23% Similarity=0.382 Sum_probs=199.6
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc---eeeeeeeEEEECC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKG 123 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~---~vL~~vsl~i~~G 123 (555)
..+.....-|..+.++.++.+++|+..+-++..... ... .+ ....+.|+++||+|.|+.+ ++|+|+||+|+||
T Consensus 419 ~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~i~~~-G~~--~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pG 494 (716)
T KOG0058|consen 419 SSLSGLSSFYSELMKGVGASERVFELMDRKPRIPLT-GTL--AP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPG 494 (716)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhccCCCCCCC-Ccc--cc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCC
Confidence 356667777788999999999999988665532221 110 00 1356779999999999754 5999999999999
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhH----HH
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFK----EE 189 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~----~~ 189 (555)
|++|||||||+||||+.++|..+|+|++|+|.+||.++ +||+|.|+|.+ |+.||+|||..+.. ++
T Consensus 495 e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvL-Fs~sI~eNI~YG~~~~t~e~ 573 (716)
T KOG0058|consen 495 EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVL-FSGSIRENIAYGLDNATDEE 573 (716)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeecccee-ecccHHHHHhcCCCCCCHHH
Confidence 99999999999999999999999999999999999764 59999999988 88999999976542 22
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
+..+++..+.+.++ ..+-+ |++....++ -.+||||||||+|
T Consensus 574 i~~AAk~ANah~FI------------------------------------~~~p~--gY~T~VGEk-G~qLSGGQKQRIA 614 (716)
T KOG0058|consen 574 IEAAAKMANAHEFI------------------------------------TNFPD--GYNTVVGEK-GSQLSGGQKQRIA 614 (716)
T ss_pred HHHHHHHhChHHHH------------------------------------HhCcc--ccccccCCc-cccccchHHHHHH
Confidence 22222222222221 11111 233222223 3589999999999
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||++||.||||||.||+||.+++..+.+.|.+ .+.|||+|.|+++.+.+ ||+|+++++|++. ..|++++.+..
T Consensus 615 IARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~-Ad~Ivvi~~G~V~-E~G~h~eLl~~ 692 (716)
T KOG0058|consen 615 IARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRH-ADQIVVIDKGRVV-EMGTHDELLSK 692 (716)
T ss_pred HHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhh-ccEEEEEcCCeEE-ecccHHHHhhC
Confidence 99999999999999999999999999999998864 57999999999999975 9999999999974 56788776653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=354.08 Aligned_cols=214 Identities=26% Similarity=0.429 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ceE
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MKI 163 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~i 163 (555)
|+++||+++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 478999999987 789999999999999999999999999999999999999999999998743 148
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..||.+|+.......... .. .+ ..........++.+++
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~---~~----~~------------------------~~~~~~~~~~~~~~~l 129 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRST---WR----SL------------------------FGLFPKEEKQRALAAL 129 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchh---hh----hh------------------------cccCcHHHHHHHHHHH
Confidence 99999998878899999985432100000 00 00 0000112234567788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l 319 (555)
+.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++
T Consensus 130 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~ 208 (241)
T cd03256 130 ERVGLL-DKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLA 208 (241)
T ss_pred HHcCCh-hhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH
Confidence 999986 456888999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
..+||+|++|++|++. +.|.++++
T Consensus 209 ~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (241)
T cd03256 209 REYADRIVGLKDGRIV-FDGPPAEL 232 (241)
T ss_pred HHhCCEEEEEECCEEE-eecCHHHh
Confidence 9999999999999974 55776654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-44 Score=352.51 Aligned_cols=207 Identities=31% Similarity=0.522 Sum_probs=175.3
Q ss_pred cEEEEeEEEEeCCc----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+|+++|++++|+++ ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKA 80 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHH
Confidence 37899999999876 89999999999999999999999999999999999999999999998753
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++..|+.+|+...... . ..........+
T Consensus 81 ~~~i~~~~q~~~~~~~~t~~e~l~~~~~~---------------~------------------------~~~~~~~~~~~ 121 (233)
T cd03258 81 RRRIGMIFQHFNLLSSRTVFENVALPLEI---------------A------------------------GVPKAEIEERV 121 (233)
T ss_pred HhheEEEccCcccCCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHH
Confidence 2489999999887788999997532100 0 00011123456
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 122 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~ 200 (233)
T cd03258 122 LELLELVGLE-DKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHE 200 (233)
T ss_pred HHHHHHCCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCC
Confidence 7788899996 456888999999999999999999999999999999999999999999988753 38899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||++++|++|++. ..|+..++
T Consensus 201 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 228 (233)
T cd03258 201 MEVVKRICDRVAVMEKGEVV-EEGTVEEV 228 (233)
T ss_pred HHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999999999974 45665543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=348.66 Aligned_cols=199 Identities=26% Similarity=0.454 Sum_probs=170.0
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ce
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ 162 (555)
+|+++||+++| +++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 80 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQ 80 (222)
T ss_pred CEEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhh
Confidence 37899999999 66789999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++..|+.+|+..... .. .....+...++.++
T Consensus 81 i~~~~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~ 121 (222)
T PRK10908 81 IGMIFQDHHLLMDRTVYDNVAIPLI---------------IA------------------------GASGDDIRRRVSAA 121 (222)
T ss_pred eEEEecCccccccccHHHHHHhHHH---------------hc------------------------CCCHHHHHHHHHHH
Confidence 8999999988788999999853210 00 00111223456678
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.+ .+.|+|+||||++++
T Consensus 122 l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~ 200 (222)
T PRK10908 122 LDKVGLL-DKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLI 200 (222)
T ss_pred HHHcCCh-hhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH
Confidence 8889986 456888999999999999999999999999999999999999999998887753 478999999999999
Q ss_pred HhhcceeEEecCCeEe
Q 008750 320 DQLCTKIVETEMGVSR 335 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~ 335 (555)
..+||+|++|++|++.
T Consensus 201 ~~~~d~i~~l~~G~i~ 216 (222)
T PRK10908 201 SRRSYRMLTLSDGHLH 216 (222)
T ss_pred HHhCCEEEEEECCEEc
Confidence 9999999999999864
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-44 Score=346.32 Aligned_cols=197 Identities=29% Similarity=0.469 Sum_probs=169.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|+++.|+++++|+|+||+|++| +++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998888999999999999 999999999999999999999999999999999854 25899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..||.+|+..... +. .....+....+.++++.+|+
T Consensus 80 ~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l 120 (211)
T cd03264 80 EFGVYPNFTVREFLDYIAW---------------LK------------------------GIPSKEVKARVDEVLELVNL 120 (211)
T ss_pred CCcccccCCHHHHHHHHHH---------------Hh------------------------CCCHHHHHHHHHHHHHHCCC
Confidence 9988778899999753210 00 00111224456778888998
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhccee
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri 326 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.++||++
T Consensus 121 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i 199 (211)
T cd03264 121 G-DRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQV 199 (211)
T ss_pred H-HHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEE
Confidence 6 456788999999999999999999999999999999999999999999998864 2689999999999999999999
Q ss_pred EEecCCeEe
Q 008750 327 VETEMGVSR 335 (555)
Q Consensus 327 ~~l~~G~~~ 335 (555)
++|++|++.
T Consensus 200 ~~l~~g~i~ 208 (211)
T cd03264 200 AVLNKGKLV 208 (211)
T ss_pred EEEECCEEE
Confidence 999999874
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-44 Score=361.95 Aligned_cols=210 Identities=23% Similarity=0.411 Sum_probs=176.1
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
.|+++||++.|++ +++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3899999999964 469999999999999999999999999999999999999999999998843
Q ss_pred -ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 -MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 -~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..|||+||++. .++..||.+|+...... ..+...+...+
T Consensus 82 ~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~ 122 (287)
T PRK13637 82 RKKVGLVFQYPEYQLFEETIEKDIAFGPIN---------------------------------------LGLSEEEIENR 122 (287)
T ss_pred hhceEEEecCchhccccccHHHHHHhHHHH---------------------------------------CCCCHHHHHHH
Confidence 25899999974 33567999998532100 00112233456
Q ss_pred HHHHhhhcCCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 239 VSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||
T Consensus 123 ~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vt 202 (287)
T PRK13637 123 VKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVS 202 (287)
T ss_pred HHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788899999962 457899999999999999999999999999999999999999999999988743 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||||++|++|++. +.|...++..
T Consensus 203 Hd~~~~~~~~drv~~l~~G~i~-~~g~~~~~~~ 234 (287)
T PRK13637 203 HSMEDVAKLADRIIVMNKGKCE-LQGTPREVFK 234 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999975 5677666543
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-44 Score=355.11 Aligned_cols=215 Identities=27% Similarity=0.415 Sum_probs=176.4
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------ce
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~~ 162 (555)
+|+++||+++|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRR 80 (243)
T ss_pred CeEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhh
Confidence 378999999998 7789999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++..||.+|+........... . .+. .........++.++
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~---~----~~~------------------------~~~~~~~~~~~~~~ 129 (243)
T TIGR02315 81 IGMIFQHYNLIERLTVLENVLHGRLGYKPTW---R----SLL------------------------GRFSEEDKERALSA 129 (243)
T ss_pred eEEEcCCCcccccccHHHHHhhcccccccch---h----hhh------------------------ccccHHHHHHHHHH
Confidence 8999999988788999999854211000000 0 000 00011223467778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||+++
T Consensus 130 l~~~~l~-~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~ 208 (243)
T TIGR02315 130 LERVGLA-DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDL 208 (243)
T ss_pred HHHcCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 8999986 456888999999999999999999999999999999999999999999888753 37899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+.++||+|++|++|++. +.|+++++
T Consensus 209 ~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (243)
T TIGR02315 209 AKKYADRIVGLKAGEIV-FDGAPSEL 233 (243)
T ss_pred HHHhcCeEEEEECCEEE-ecCCHHHh
Confidence 99999999999999974 56766553
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-44 Score=343.85 Aligned_cols=222 Identities=29% Similarity=0.402 Sum_probs=187.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
+++++++|+++||+-.+++||||+|++||++|||||||||||||+++|+|+++|++|+|.++|.++ .|+
T Consensus 3 ~lL~v~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~ 82 (250)
T COG0411 3 PLLEVRGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIA 82 (250)
T ss_pred ceeeeccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccce
Confidence 568999999999999999999999999999999999999999999999999999999999998753 588
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
.-||.+.+++++||.||++.+...... +...+.. ........+..+++.++|+
T Consensus 83 RTFQ~~rlF~~lTVlENv~va~~~~~~-------~~~~l~~--------------------~~~~~~e~~~~e~A~~~Le 135 (250)
T COG0411 83 RTFQITRLFPGLTVLENVAVGAHARLG-------LSGLLGR--------------------PRARKEEREARERARELLE 135 (250)
T ss_pred eecccccccCCCcHHHHHHHHhhhhhh-------hhhhhcc--------------------ccchhhHHHHHHHHHHHHH
Confidence 999999999999999999765321110 0000000 0000012345678899999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---C-CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K-QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~-~~~tvIiiSHd~~~l~ 320 (555)
.+||. +..+++..+||+|||+|+.|||||+.+|++||||||.+||.+.....+.+.++ + .|.||++|.||+.++.
T Consensus 136 ~vgL~-~~a~~~A~~LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm 214 (250)
T COG0411 136 FVGLG-ELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVM 214 (250)
T ss_pred HcCCc-hhhcchhhcCChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHh
Confidence 99997 57799999999999999999999999999999999999999998888887764 3 5799999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+||||+||+.|++ ..+|++++...
T Consensus 215 ~l~dri~Vl~~G~~-IAeG~P~eV~~ 239 (250)
T COG0411 215 GLADRIVVLNYGEV-IAEGTPEEVRN 239 (250)
T ss_pred hhccEEEeccCCcC-cccCCHHHHhc
Confidence 99999999999985 68999887654
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-44 Score=347.38 Aligned_cols=196 Identities=28% Similarity=0.455 Sum_probs=167.8
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------eE
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------KI 163 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------~i 163 (555)
|+++||+++|++ +++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 478999999964 6799999999999999999999999999999999999999999999987531 48
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..|+.+|+...... . .........++.+++
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEV---------------T------------------------GVPPREIRKRVPAAL 121 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 9999999888888999997542100 0 001112234567788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~ 200 (214)
T cd03292 122 ELVGLS-HKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVD 200 (214)
T ss_pred HHcCCH-HHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 889986 456888999999999999999999999999999999999999999999888753 4899999999999999
Q ss_pred hhcceeEEecCCe
Q 008750 321 QLCTKIVETEMGV 333 (555)
Q Consensus 321 ~~~dri~~l~~G~ 333 (555)
.+||+|++|++|+
T Consensus 201 ~~~d~i~~l~~G~ 213 (214)
T cd03292 201 TTRHRVIALERGK 213 (214)
T ss_pred HhCCEEEEEeCCc
Confidence 9999999999886
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=374.71 Aligned_cols=211 Identities=30% Similarity=0.408 Sum_probs=180.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
++|+++||+++|+++++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+|||
T Consensus 2 ~~L~~~nls~~y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 46899999999999999999999999999999999999999999999999999999999999843 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC--cccHHHHHHHHh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN--LDTLDAKVSKLM 243 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l 243 (555)
++|++.+++.+||.+|+........ ..+. .....+++.+++
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~-------------------------------------~~~~~~~~~~~~~v~~~l 124 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHR-------------------------------------SRFDTWTETDRAAVERAM 124 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhc-------------------------------------ccccCCCHHHHHHHHHHH
Confidence 9999998899999999864311000 0000 112245678889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+|||||||||+|||||+++|++|||||||++||+.++..+.++|+ +.+.|||++|||++++.
T Consensus 125 e~vgl~-~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~ 203 (402)
T PRK09536 125 ERTGVA-QFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAA 203 (402)
T ss_pred HHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHH
Confidence 999996 56789999999999999999999999999999999999999999988888765 35889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++||||++|++|++. +.|+++++.
T Consensus 204 ~~adrii~l~~G~iv-~~G~~~ev~ 227 (402)
T PRK09536 204 RYCDELVLLADGRVR-AAGPPADVL 227 (402)
T ss_pred HhCCEEEEEECCEEE-EecCHHHHh
Confidence 999999999999974 578776654
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=347.79 Aligned_cols=197 Identities=29% Similarity=0.500 Sum_probs=169.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig~ 165 (555)
|+++||+++|+++++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4789999999888899999999999999999999999999999999999999999999987532 4899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+...... .. .........++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~l~~ 122 (213)
T cd03262 81 VFQQFNLFPHLTVLENITLAPIK--------------VK------------------------GMSKAEAEERALELLEK 122 (213)
T ss_pred EecccccCCCCcHHHHHHhHHHH--------------hc------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887789999997532100 00 00111223456778888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++.++
T Consensus 123 ~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~ 201 (213)
T cd03262 123 VGLA-DKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREV 201 (213)
T ss_pred cCCH-hHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456889999999999999999999999999999999999999999999988753 478999999999999999
Q ss_pred cceeEEecCCe
Q 008750 323 CTKIVETEMGV 333 (555)
Q Consensus 323 ~dri~~l~~G~ 333 (555)
||+|++|++|+
T Consensus 202 ~d~i~~l~~g~ 212 (213)
T cd03262 202 ADRVIFMDDGR 212 (213)
T ss_pred CCEEEEEeCCc
Confidence 99999999886
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=353.04 Aligned_cols=207 Identities=28% Similarity=0.411 Sum_probs=175.6
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 478999999987 789999999999999999999999999999999999999999999998753 258999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+..... +. ..+......++.++++.+
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~l 121 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPK---------------LL------------------------KWPKEKIRERADELLALV 121 (242)
T ss_pred ccCccccCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHc
Confidence 999988788999999753210 00 001112244677889999
Q ss_pred CCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHh
Q 008750 247 GFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 247 gl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~ 321 (555)
|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|++ .|.|||+||||++++..
T Consensus 122 ~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~ 201 (242)
T cd03295 122 GLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFR 201 (242)
T ss_pred CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHH
Confidence 9974 367889999999999999999999999999999999999999999999988754 38999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||+|++|++|++. +.|+..++
T Consensus 202 ~~d~i~~l~~G~i~-~~~~~~~~ 223 (242)
T cd03295 202 LADRIAIMKNGEIV-QVGTPDEI 223 (242)
T ss_pred hCCEEEEEECCEEE-EecCHHHH
Confidence 99999999999974 45655443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=397.16 Aligned_cols=211 Identities=30% Similarity=0.488 Sum_probs=185.8
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc-cc
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EV 172 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~-~~ 172 (555)
...+|+++||++.|+++++|+||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+ |.+..|||++|++ .+
T Consensus 316 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~~i~y~~q~~~~l 394 (635)
T PRK11147 316 GKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKLEVAYFDQHRAEL 394 (635)
T ss_pred CCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCcEEEEEeCccccc
Confidence 456799999999999888999999999999999999999999999999999999999999998 5667899999986 46
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
++..||.+|+...... .........+..++..+|+....
T Consensus 395 ~~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~ 433 (635)
T PRK11147 395 DPEKTVMDNLAEGKQE-----------------------------------------VMVNGRPRHVLGYLQDFLFHPKR 433 (635)
T ss_pred CCCCCHHHHHHhhccc-----------------------------------------ccccchHHHHHHHHHhcCCCHHH
Confidence 6788999987532100 00001123467788889997566
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec-C
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE-M 331 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~-~ 331 (555)
.++++.+|||||||||+||++|+.+|+||||||||||||+.+++.|.++|++++.|||+||||++++..+||+|++++ +
T Consensus 434 ~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vSHd~~~~~~~~d~i~~l~~~ 513 (635)
T PRK11147 434 AMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSYQGTVLLVSHDRQFVDNTVTECWIFEGN 513 (635)
T ss_pred HhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhcCEEEEEeCC
Confidence 789999999999999999999999999999999999999999999999999888899999999999999999999998 8
Q ss_pred CeEeeccCChHHHHH
Q 008750 332 GVSRTYEGNYSQYVL 346 (555)
Q Consensus 332 G~~~~~~G~y~~~~~ 346 (555)
|++..|.|+|++|..
T Consensus 514 g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 514 GKIGRYVGGYHDARQ 528 (635)
T ss_pred CeEEEccCCHHHHHH
Confidence 999999999999965
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-44 Score=347.32 Aligned_cols=195 Identities=32% Similarity=0.477 Sum_probs=165.1
Q ss_pred EEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 99 KLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 99 ~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 789999999999999999999999999999999999999999999998743 258999
Q ss_pred eccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 167 SQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 167 ~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
+|++.. ++..|+.+|+...... . .........++.++++.
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLEN---------------L------------------------GLPEEEIEERVEEALEL 121 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 999753 5678999987532100 0 00111223456778888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|.+ .+.|||+||||++++..+
T Consensus 122 ~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 122 VGLE-GLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred cCcH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 9986 456888999999999999999999999999999999999999999999988753 478999999999999999
Q ss_pred cceeEEecCCe
Q 008750 323 CTKIVETEMGV 333 (555)
Q Consensus 323 ~dri~~l~~G~ 333 (555)
||+|++|++|+
T Consensus 201 ~d~i~~l~~G~ 211 (211)
T cd03225 201 ADRVIVLEDGK 211 (211)
T ss_pred CCEEEEEeCCC
Confidence 99999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=347.90 Aligned_cols=200 Identities=27% Similarity=0.405 Sum_probs=170.0
Q ss_pred CccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 95 SSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
+++|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 356999999999975 359999999999999999999999999999999999999999999998742
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++..|+.+|+..... .. ........
T Consensus 84 ~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~ 124 (228)
T PRK10584 84 KLRAKHVGFVFQSFMLIPTLNALENVELPAL---------------LR------------------------GESSRQSR 124 (228)
T ss_pred HHHhheEEEEEcccccCCCcCHHHHHHHHHH---------------hc------------------------CCCHHHHH
Confidence 259999999988788899999753210 00 00011234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIii 312 (555)
+++.++++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|+ +.+.|||+|
T Consensus 125 ~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 203 (228)
T PRK10584 125 NGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILV 203 (228)
T ss_pred HHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5677888999996 45688899999999999999999999999999999999999999999998874 348899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEe
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~ 335 (555)
|||++++.. ||+|++|++|++.
T Consensus 204 sH~~~~~~~-~d~i~~l~~g~i~ 225 (228)
T PRK10584 204 THDLQLAAR-CDRRLRLVNGQLQ 225 (228)
T ss_pred ecCHHHHHh-CCEEEEEECCEEE
Confidence 999999864 9999999999864
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=351.22 Aligned_cols=208 Identities=26% Similarity=0.419 Sum_probs=177.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------------- 161 (555)
+|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 48999999999888899999999999999999999999999999999999999999999987531
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.|+|++|++.+++..|+.+|+...... .. .........++.
T Consensus 82 ~~i~~~~q~~~~~~~~tv~e~i~~~~~~--------------~~------------------------~~~~~~~~~~~~ 123 (242)
T PRK11124 82 RNVGMVFQQYNLWPHLTVQQNLIEAPCR--------------VL------------------------GLSKDQALARAE 123 (242)
T ss_pred hheEEEecCccccCCCcHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHH
Confidence 489999999888888999998532100 00 000111234567
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|+||||++
T Consensus 124 ~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 202 (242)
T PRK11124 124 KLLERLRLK-PYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHH
Confidence 788889996 467888999999999999999999999999999999999999999999988753 5899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++..+||++++|++|++. +.|++.++
T Consensus 203 ~~~~~~d~i~~l~~g~i~-~~~~~~~~ 228 (242)
T PRK11124 203 VARKTASRVVYMENGHIV-EQGDASCF 228 (242)
T ss_pred HHHHhcCEEEEEECCEEE-EeCCHHHh
Confidence 999999999999999874 66777654
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=358.69 Aligned_cols=207 Identities=26% Similarity=0.383 Sum_probs=174.8
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
++|+++||+++|+ +.++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|+
T Consensus 3 ~~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 82 (274)
T PRK13647 3 NIIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVG 82 (274)
T ss_pred ceEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEE
Confidence 3689999999996 5679999999999999999999999999999999999999999999999853 2599
Q ss_pred EEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++. .++..||.+|+...... ..+.......++..++
T Consensus 83 ~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 123 (274)
T PRK13647 83 LVFQDPDDQVFSSTVWDDVAFGPVN---------------------------------------MGLDKDEVERRVEEAL 123 (274)
T ss_pred EEecChhhhhccCcHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 34667999998532100 0011122345677888
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++.
T Consensus 124 ~~~~L~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~ 202 (274)
T PRK13647 124 KAVRMW-DFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAA 202 (274)
T ss_pred HHCCCH-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 999996 567899999999999999999999999999999999999999999999888753 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
++||+|++|++|++. +.|+...
T Consensus 203 ~~~d~i~~l~~G~i~-~~g~~~~ 224 (274)
T PRK13647 203 EWADQVIVLKEGRVL-AEGDKSL 224 (274)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999974 5566543
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-44 Score=334.60 Aligned_cols=205 Identities=20% Similarity=0.321 Sum_probs=167.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc-----eEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~I~~~g~~~-------- 161 (555)
.+.++++||++.|+++.+|+|||+.|+++.++|||||+|||||||||++..+..... |+|.++|.++
T Consensus 5 ~~~~~~~~l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 5 IPAIEVRDLNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred cceeEecceeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 355899999999999999999999999999999999999999999999999987754 9999998653
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
+||+|+|.|+.++ +|++||+..+.+-. .+ .+ .++++
T Consensus 85 ~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~--------g~------------------------------~~-~~lde 124 (253)
T COG1117 85 ELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLH--------GI------------------------------KD-KELDE 124 (253)
T ss_pred HHHHHheeeccCCCCCC-chHHHHHHHhHHhh--------cc------------------------------ch-HHHHH
Confidence 6999999998866 99999997653210 00 00 12222
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
.++..|....|. .+.+++....|||||+||++|||||+.+|+|||||||||+|||.+-..+.+++.+ ...|||||
T Consensus 125 iVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviV 204 (253)
T COG1117 125 IVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIV 204 (253)
T ss_pred HHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEE
Confidence 333333333332 2345677789999999999999999999999999999999999887777777643 47899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccC
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEG 339 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G 339 (555)
||.+.-+.+++|+++++..|.++.|.-
T Consensus 205 THnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 205 THNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred eCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 999999999999999999999987743
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=349.90 Aligned_cols=207 Identities=23% Similarity=0.385 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~ 80 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVF 80 (236)
T ss_pred CEEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeC
Confidence 47899999999888899999999999999999999999999999999999999999999987532 589999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..|+.+|+..... .. ..........+.++++.+|
T Consensus 81 q~~~~~~~~t~~~~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~g 121 (236)
T TIGR03864 81 QQPTLDLDLSVRQNLRYHAA---------------LH------------------------GLSRAEARERIAALLARLG 121 (236)
T ss_pred CCCCCcccCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHHHHHHHHcC
Confidence 99988788999998743210 00 0001112345677888899
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|+|+||||++++.. |
T Consensus 122 l~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~ 199 (236)
T TIGR03864 122 LA-ERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-D 199 (236)
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-C
Confidence 86 456888999999999999999999999999999999999999999999988753 47899999999999975 9
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|+.+++.
T Consensus 200 d~i~~l~~G~i~-~~~~~~~~~ 220 (236)
T TIGR03864 200 DRLVVLHRGRVL-ADGAAAELR 220 (236)
T ss_pred CEEEEEeCCeEE-EeCCHHHHH
Confidence 999999999974 456665543
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=346.82 Aligned_cols=196 Identities=24% Similarity=0.442 Sum_probs=167.0
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 789999999964 479999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++..|+.+|+..... .. .........++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~---------------~~------------------------~~~~~~~~~~~ 122 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKSVKEAKERA 122 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHH---------------hc------------------------CCCHHHHHHHH
Confidence 249999999888778899999753210 00 00011123456
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||
T Consensus 123 ~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~ 201 (221)
T TIGR02211 123 YEMLEKVGLE-HRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHD 201 (221)
T ss_pred HHHHHHcCCh-hhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788899996 456889999999999999999999999999999999999999999999988753 48899999999
Q ss_pred HHHHHhhcceeEEecCCeE
Q 008750 316 RAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~ 334 (555)
++++.. ||+|++|++|++
T Consensus 202 ~~~~~~-~d~v~~l~~G~i 219 (221)
T TIGR02211 202 LELAKK-LDRVLEMKDGQL 219 (221)
T ss_pred HHHHhh-cCEEEEEeCCEe
Confidence 999965 899999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=363.53 Aligned_cols=214 Identities=16% Similarity=0.246 Sum_probs=177.8
Q ss_pred CCCccEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------
Q 008750 93 SISSGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------- 160 (555)
...++|+++||+|+|++ .++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 17 ~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~ 96 (320)
T PRK13631 17 SDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNN 96 (320)
T ss_pred CCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccc
Confidence 34567999999999964 369999999999999999999999999999999999999999999998621
Q ss_pred -------------------ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Q 008750 161 -------------------MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEF 220 (555)
Q Consensus 161 -------------------~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (555)
..|+||+|++. ..+..||.+|+..+... .
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~-----------------~-------------- 145 (320)
T PRK13631 97 HELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVA-----------------L-------------- 145 (320)
T ss_pred ccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHh-----------------c--------------
Confidence 14899999973 23556999998532100 0
Q ss_pred HHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH
Q 008750 221 DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG 300 (555)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~ 300 (555)
.........++.++++.+|++....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+
T Consensus 146 --------~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~ 217 (320)
T PRK13631 146 --------GVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQ 217 (320)
T ss_pred --------CCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHH
Confidence 001122344677888999996456788999999999999999999999999999999999999999999998
Q ss_pred HHc---CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 301 YLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 301 ~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.|. +.|.|||+||||++++..+||+|++|++|+++ ..|+..++..
T Consensus 218 ~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~-~~g~~~~~~~ 265 (320)
T PRK13631 218 LILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL-KTGTPYEIFT 265 (320)
T ss_pred HHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHhc
Confidence 875 35899999999999999999999999999974 5677766543
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=359.72 Aligned_cols=209 Identities=21% Similarity=0.323 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
.|+++||++.|++ +++|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4899999999973 4699999999999999999999999999999999999999999999988531
Q ss_pred ----eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 ----KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 ----~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.|+|++|++. .++..||.+|+...... ......+..
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~ 122 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKN---------------------------------------FGFSEDEAK 122 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHH---------------------------------------cCCCHHHHH
Confidence 4899999973 33467999987532100 001112234
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||
T Consensus 123 ~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivs 202 (287)
T PRK13641 123 EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVT 202 (287)
T ss_pred HHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 56778899999964567899999999999999999999999999999999999999999999888753 589999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++ .+.|...++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~i-~~~g~~~~~~ 233 (287)
T PRK13641 203 HNMDDVAEYADDVLVLEHGKL-IKHASPKEIF 233 (287)
T ss_pred CCHHHHHHhCCEEEEEECCEE-EEeCCHHHHh
Confidence 999999999999999999997 4567665543
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=350.85 Aligned_cols=203 Identities=23% Similarity=0.362 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
.|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 4899999999988889999999999999999999999999999999999999999999998843 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.++. .|+.+|+...... . .....++.++++.+
T Consensus 83 ~q~~~~~~-~tv~e~l~~~~~~------------------------------------------~-~~~~~~~~~~l~~~ 118 (241)
T PRK14250 83 FQQPHLFE-GTVKDNIEYGPML------------------------------------------K-GEKNVDVEYYLSIV 118 (241)
T ss_pred ecCchhch-hhHHHHHhcchhh------------------------------------------c-CcHHHHHHHHHHHc
Confidence 99987754 6999887432100 0 00123456778888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~ 322 (555)
|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .|.|||+||||++++..+
T Consensus 119 ~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~ 198 (241)
T PRK14250 119 GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRI 198 (241)
T ss_pred CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHh
Confidence 9864566889999999999999999999999999999999999999999999888753 489999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|++|++|++.. .|...++
T Consensus 199 ~d~i~~l~~G~i~~-~~~~~~~ 219 (241)
T PRK14250 199 GDYTAFLNKGILVE-YAKTYDF 219 (241)
T ss_pred CCEEEEEeCCEEEE-eCCHHHH
Confidence 99999999999754 4444443
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=359.79 Aligned_cols=209 Identities=24% Similarity=0.384 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 98 i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
|+++||+++|++ +++|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 899999999963 3699999999999999999999999999999999999999999999988432
Q ss_pred ---eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ---KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ---~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.|||+||++. .++..||.+|+...... ..+.......
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~---------------------------------------~~~~~~~~~~ 123 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKN---------------------------------------FKMNLDEVKN 123 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHH---------------------------------------cCCCHHHHHH
Confidence 5899999973 33446999988532100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.+++++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vt 203 (286)
T PRK13646 124 YAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVS 203 (286)
T ss_pred HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 6778899999964567889999999999999999999999999999999999999999999888753 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||||++|++|++. +.|...++..
T Consensus 204 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~~ 235 (286)
T PRK13646 204 HDMNEVARYADEVIVMKEGSIV-SQTSPKELFK 235 (286)
T ss_pred cCHHHHHHhCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999974 5677766543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=364.18 Aligned_cols=211 Identities=22% Similarity=0.386 Sum_probs=177.2
Q ss_pred CccEEEEeEEEEeCC----------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----
Q 008750 95 SSGVKLENISKSYKG----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---- 160 (555)
+++|+++||++.|+. ..+|+||||+|.+||++||||+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 356999999999952 469999999999999999999999999999999999999999999999853
Q ss_pred ---------ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Q 008750 161 ---------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (555)
Q Consensus 161 ---------~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
..|+||+|++ .+.+.+||.+++...+... ..
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~--------------------------------------~~ 124 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLIN--------------------------------------TS 124 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHc--------------------------------------cC
Confidence 2599999998 4667789988774321100 00
Q ss_pred cCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----C
Q 008750 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (555)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~ 305 (555)
+...+...++.++++.+||.....++++++|||||+|||+|||||+.+|++||+||||++||+.++.++.++|.+ .
T Consensus 125 ~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~ 204 (327)
T PRK11308 125 LSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQEL 204 (327)
T ss_pred CCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHc
Confidence 111223457888999999975567999999999999999999999999999999999999999999998887743 5
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|.|+|+||||+.++.++||+|++|.+|+++ ..|+..++
T Consensus 205 g~til~iTHdl~~~~~~adrv~vm~~G~iv-e~g~~~~~ 242 (327)
T PRK11308 205 GLSYVFISHDLSVVEHIADEVMVMYLGRCV-EKGTKEQI 242 (327)
T ss_pred CCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 899999999999999999999999999975 45665444
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=413.55 Aligned_cols=221 Identities=22% Similarity=0.267 Sum_probs=160.5
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCC-------ceEEEEecccccCcCccHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN-------MKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~ 179 (555)
+.+|+|||+.|++|++++|+||||||||||||+|+|.++|+ +|+|.++|.+ ..++|++|+..+++.+||+
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~lTV~ 257 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQNDVHVGVMTVK 257 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecccccCCCcCcHH
Confidence 45999999999999999999999999999999999999998 9999999853 3589999998888899999
Q ss_pred HHHHHhhHHH-----HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc---
Q 008750 180 EEFMSAFKEE-----MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD--- 251 (555)
Q Consensus 180 e~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--- 251 (555)
|++..+..-. .........- +.......+. +.+.+... ......+....++.+++.+||++.
T Consensus 258 EtL~f~a~~~~~~~~~~~~~~~~~~-ek~~~~~~~~--------~i~~~~~~-~~~~~~~~~~~~~~~L~~lGL~~~~~t 327 (1470)
T PLN03140 258 ETLDFSARCQGVGTRYDLLSELARR-EKDAGIFPEA--------EVDLFMKA-TAMEGVKSSLITDYTLKILGLDICKDT 327 (1470)
T ss_pred HHHHHHHHhcCCCCcccchhhcCHH-HHhccCCCch--------hhHHHHHH-hhhhcchhhHHHHHHHHHcCCccccCc
Confidence 9986432100 0000000000 0000000000 00000000 000011123356778999999642
Q ss_pred -ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH-HHHHhhcce
Q 008750 252 -DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTK 325 (555)
Q Consensus 252 -~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~-~~l~~~~dr 325 (555)
..+..+..|||||||||+||++|+.+|++|+|||||+|||..+...+.+.|++ .|.|+|+++|++ ..+.++||+
T Consensus 328 ~vg~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~ 407 (1470)
T PLN03140 328 IVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDD 407 (1470)
T ss_pred eeCCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhhe
Confidence 23667789999999999999999999999999999999999999998887753 488999999996 578889999
Q ss_pred eEEecCCeEeeccCCh
Q 008750 326 IVETEMGVSRTYEGNY 341 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y 341 (555)
|++|++|+++ |.|+.
T Consensus 408 vilL~~G~iv-y~G~~ 422 (1470)
T PLN03140 408 IILLSEGQIV-YQGPR 422 (1470)
T ss_pred EEEeeCceEE-EeCCH
Confidence 9999999874 55543
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=348.03 Aligned_cols=199 Identities=24% Similarity=0.446 Sum_probs=169.4
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
++|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 46999999999964 479999999999999999999999999999999999999999999998843
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++..|+.+|+..... +. .........
T Consensus 84 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~ 124 (233)
T PRK11629 84 LRNQKLGFIYQFHHLLPDFTALENVAMPLL---------------IG------------------------KKKPAEINS 124 (233)
T ss_pred HHhccEEEEecCcccCCCCCHHHHHHHHHH---------------hc------------------------CCCHHHHHH
Confidence 249999999988778899999853210 00 001112334
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||
T Consensus 125 ~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~s 203 (233)
T PRK11629 125 RALEMLAAVGLE-HRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVT 203 (233)
T ss_pred HHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 677888999996 456788999999999999999999999999999999999999999999988753 488999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
||++++.. +|++++|++|++.
T Consensus 204 H~~~~~~~-~~~~~~l~~G~i~ 224 (233)
T PRK11629 204 HDLQLAKR-MSRQLEMRDGRLT 224 (233)
T ss_pred CCHHHHHh-hCEEEEEECCEEE
Confidence 99999987 4799999999874
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-43 Score=349.83 Aligned_cols=216 Identities=29% Similarity=0.430 Sum_probs=178.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig~ 165 (555)
+|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 58999999999888899999999999999999999999999999999999999999999998532 4999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..||.+|+........... ..+ ........+.++.++++.
T Consensus 82 ~~q~~~~~~~~tv~~nl~~~~~~~~~~~-------~~~------------------------~~~~~~~~~~~~~~~l~~ 130 (242)
T TIGR03411 82 KFQKPTVFENLTVFENLELALPRDKSVF-------ASL------------------------FFRLSAEEKDRIEEVLET 130 (242)
T ss_pred eccccccCCCCCHHHHHHHhhhcccccc-------ccc------------------------ccccHHHHHHHHHHHHHH
Confidence 9999988888899999854211000000 000 000001224567788899
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhc
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~ 323 (555)
+|+. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+|
T Consensus 131 ~~l~-~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~ 209 (242)
T TIGR03411 131 IGLA-DEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIA 209 (242)
T ss_pred cCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 9996 456888999999999999999999999999999999999999999999998864 3689999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|+++++.
T Consensus 210 d~i~~l~~g~~~-~~~~~~~~~ 230 (242)
T TIGR03411 210 DKVTVLHQGSVL-AEGSLDQVQ 230 (242)
T ss_pred CEEEEEECCeEE-eeCCHHHHh
Confidence 999999999974 567766654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=363.26 Aligned_cols=199 Identities=29% Similarity=0.458 Sum_probs=170.1
Q ss_pred EEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEecccccCcC
Q 008750 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMS 175 (555)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~Q~~~~~~~ 175 (555)
++|+++++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .+||++|++.+++.
T Consensus 1 k~y~~~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~ 80 (302)
T TIGR01188 1 KVYGDFKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPRKVRRSIGIVPQYASVDED 80 (302)
T ss_pred CeeCCeeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCHHHHHhhcEEecCCCCCCCC
Confidence 468888899999999999999999999999999999999999999999999988542 59999999988888
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
+||.+|+..... +. .........++.++++.+|+. ...++
T Consensus 81 ~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~ 120 (302)
T TIGR01188 81 LTGRENLEMMGR---------------LY------------------------GLPKDEAEERAEELLELFELG-EAADR 120 (302)
T ss_pred CcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhCC
Confidence 999999753210 00 001112345678889999996 45789
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
++.+|||||||||+||+||+.+|++|||||||++||+.++.++.++|++ .|.|||++|||++++..+||+|++|++|
T Consensus 121 ~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G 200 (302)
T TIGR01188 121 PVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200 (302)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999988753 4899999999999999999999999999
Q ss_pred eEeeccCChHHH
Q 008750 333 VSRTYEGNYSQY 344 (555)
Q Consensus 333 ~~~~~~G~y~~~ 344 (555)
++. +.|+.+++
T Consensus 201 ~i~-~~g~~~~l 211 (302)
T TIGR01188 201 RII-AEGTPEEL 211 (302)
T ss_pred EEE-EECCHHHH
Confidence 974 56776554
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-43 Score=347.69 Aligned_cols=201 Identities=26% Similarity=0.411 Sum_probs=166.8
Q ss_pred cEEEEeEEEEeCCc----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
+|+++||+++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 79999999999999999999999999999999999999999999998742
Q ss_pred -ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH-H
Q 008750 161 -MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL-D 236 (555)
Q Consensus 161 -~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 236 (555)
..++|++|++ .+++..||.+|+...... .. .. ..... .
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~---------------~~-~~----------------------~~~~~~~ 122 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRI---------------HG-KL----------------------SKKEARK 122 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHh---------------cc-CC----------------------cHHHHHH
Confidence 2599999998 355678999997532100 00 00 00001 1
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii 312 (555)
..+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+|
T Consensus 123 ~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~ 202 (228)
T cd03257 123 EAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFI 202 (228)
T ss_pred HHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEE
Confidence 11246778888854466888999999999999999999999999999999999999999999988753 38899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEe
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~ 335 (555)
|||++++..+||+|++|++|++.
T Consensus 203 sH~~~~~~~~~d~i~~l~~G~i~ 225 (228)
T cd03257 203 THDLGVVAKIADRVAVMYAGKIV 225 (228)
T ss_pred eCCHHHHHHhcCeEEEEeCCEEE
Confidence 99999999999999999999874
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=346.54 Aligned_cols=203 Identities=25% Similarity=0.397 Sum_probs=168.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 578999999988889999999999999999999999999999999999999999999998742 249999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+....... ........+..+++.+
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~~~ 119 (222)
T cd03224 81 PEGRRIFPELTVEENLLLGAYAR-----------------------------------------RRAKRKARLERVYELF 119 (222)
T ss_pred ccccccCCCCcHHHHHHHHhhhc-----------------------------------------CchhHHHHHHHHHHHH
Confidence 99998888889999985421100 0001122334445555
Q ss_pred -CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 247 -GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 -gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
++. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++..+
T Consensus 120 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 120 PRLK-ERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred Hhhh-hhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 343 345788899999999999999999999999999999999999999999988753 578999999999999999
Q ss_pred cceeEEecCCeEeeccCChHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~ 343 (555)
||+|++|++|++. ..|+..+
T Consensus 199 ~d~i~~l~~G~i~-~~~~~~~ 218 (222)
T cd03224 199 ADRAYVLERGRVV-LEGTAAE 218 (222)
T ss_pred ccEEEEeeCCeEE-EeCCHHH
Confidence 9999999999874 4565443
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-43 Score=345.88 Aligned_cols=199 Identities=31% Similarity=0.486 Sum_probs=166.4
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEecccccC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS 173 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~~~~ 173 (555)
+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.++
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 36899999988889999999999999999999999999999999999999999999999864 3599999998763
Q ss_pred --cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 174 --MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 174 --~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+..||.+|+......... . ..........++.++++.+|+. .
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~-----------~------------------------~~~~~~~~~~~~~~~l~~~~l~-~ 124 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKG-----------L------------------------FRRLSKADKAKVDEALERVGLS-E 124 (213)
T ss_pred cCCCCcHHHHHHhccccccc-----------c------------------------ccCCCHHHHHHHHHHHHHcCCH-H
Confidence 447999998542110000 0 0000011234577788899986 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+|++
T Consensus 125 ~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~ 204 (213)
T cd03235 125 LADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLL 204 (213)
T ss_pred HHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 67889999999999999999999999999999999999999999999888753 578999999999999999999999
Q ss_pred ecCCe
Q 008750 329 TEMGV 333 (555)
Q Consensus 329 l~~G~ 333 (555)
|++|.
T Consensus 205 l~~~~ 209 (213)
T cd03235 205 LNRTV 209 (213)
T ss_pred EcCcE
Confidence 99874
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=334.29 Aligned_cols=211 Identities=30% Similarity=0.438 Sum_probs=182.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
+.+.++|+.|+|++++++++|||+|++||+|||+||||+||||.+.+|.|+.+|++|+|.+++.++ .||
T Consensus 3 ~~L~a~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 3 STLVAENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred cEEEehhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 458999999999999999999999999999999999999999999999999999999999998753 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHH
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKL 242 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 242 (555)
|+||++..|..+||.||++..++... .+.+ +...+++++
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE~~~---------------------------------------~d~~~~~~~~~l~~L 123 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLEIRE---------------------------------------KDLKKAERKEELDAL 123 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHhhhh---------------------------------------cchhHHHHHHHHHHH
Confidence 99999999999999999875431100 0111 223457789
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHH---HHHcCCCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE---GYLGKQDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~---~~l~~~~~tvIiiSHd~~~l 319 (555)
|++|.+. ...+++..+||||||+|+.|||||+.+|+++|||||++|.||-+...+. ..|++.|..|+|+.|+..+.
T Consensus 124 L~ef~i~-hlr~~~a~sLSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREt 202 (243)
T COG1137 124 LEEFHIT-HLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRET 202 (243)
T ss_pred HHHhchH-HHhcCcccccccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHH
Confidence 9999996 4678888999999999999999999999999999999999997765554 45677899999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
..+|||.+++.+|++ .+.|+.++....
T Consensus 203 L~i~dRaYIi~~G~v-la~G~p~ei~~n 229 (243)
T COG1137 203 LDICDRAYIISDGKV-LAEGSPEEIVNN 229 (243)
T ss_pred HhhhheEEEEecCeE-EecCCHHHHhcC
Confidence 899999999999986 678988776653
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=350.11 Aligned_cols=209 Identities=26% Similarity=0.433 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~ 165 (555)
+|+++||+++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 ~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 82 (241)
T PRK10895 3 TLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGY 82 (241)
T ss_pred eEEEeCcEEEeCCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEE
Confidence 5899999999988889999999999999999999999999999999999999999999998742 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+..... +.. .........++.++++.
T Consensus 83 ~~q~~~~~~~~tv~enl~~~~~---------------~~~-----------------------~~~~~~~~~~~~~~l~~ 124 (241)
T PRK10895 83 LPQEASIFRRLSVYDNLMAVLQ---------------IRD-----------------------DLSAEQREDRANELMEE 124 (241)
T ss_pred eccCCcccccCcHHHHHhhhhh---------------ccc-----------------------ccCHHHHHHHHHHHHHH
Confidence 9999988778899999853210 000 00011223456778888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.++ +.|.|+|++|||++++..+
T Consensus 125 ~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~ 203 (241)
T PRK10895 125 FHIE-HLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAV 203 (241)
T ss_pred cCCH-HHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHh
Confidence 8986 35678899999999999999999999999999999999999999998887764 4589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. +.|+++++.
T Consensus 204 ~d~v~~l~~G~i~-~~~~~~~~~ 225 (241)
T PRK10895 204 CERAYIVSQGHLI-AHGTPTEIL 225 (241)
T ss_pred cCEEEEEeCCeEE-eeCCHHHHh
Confidence 9999999999974 567776654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-43 Score=352.19 Aligned_cols=208 Identities=28% Similarity=0.391 Sum_probs=175.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v 166 (555)
+|+++||++.|+++.+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 4899999999998889999999999999999999999999999999999999999999998853 248999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..||.+|+....... .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~e~l~~~~~~~---------------------------------------~~~~~~~~~~~~~~l~~~ 122 (258)
T PRK13548 82 PQHSSLSFPFTVEEVVAMGRAPH---------------------------------------GLSRAEDDALVAAALAQV 122 (258)
T ss_pred ccCCcCCCCCCHHHHHHhhhccc---------------------------------------CCCcHHHHHHHHHHHHHc
Confidence 99998878889999975321000 000111234567788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhc------cCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCH
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDR 316 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~------~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~ 316 (555)
|+. ...++.+.+|||||||||+|||||+ .+|++|||||||++||+.++..+.++|+ +.+.|||+||||+
T Consensus 123 ~l~-~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~ 201 (258)
T PRK13548 123 DLA-HLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201 (258)
T ss_pred CCH-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH
Confidence 986 4568899999999999999999999 5999999999999999999988888764 3588999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+++..+||+|++|++|++. +.|.++++.
T Consensus 202 ~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 229 (258)
T PRK13548 202 NLAARYADRIVLLHQGRLV-ADGTPAEVL 229 (258)
T ss_pred HHHHHhcCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999999999874 567665543
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-44 Score=324.56 Aligned_cols=208 Identities=23% Similarity=0.366 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q 168 (555)
+|.+++|+++|+..+. .++++|+.||++||+|||||||||||++|+|++.|.+|+|.++|.+. -+++++|
T Consensus 1 ~l~L~~V~~~y~~~~~--~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQ 78 (231)
T COG3840 1 MLALDDVRFSYGHLPM--RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQ 78 (231)
T ss_pred CccccceEEeeCcceE--EEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhh
Confidence 3678999999986542 47899999999999999999999999999999999999999998753 3899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
+.++|.++||.+|+..+....+.. .....++++.++..+|+
T Consensus 79 EnNLFaHLtV~qNigLGl~P~LkL---------------------------------------~a~~r~~v~~aa~~vGl 119 (231)
T COG3840 79 ENNLFAHLTVAQNIGLGLSPGLKL---------------------------------------NAEQREKVEAAAAQVGL 119 (231)
T ss_pred ccccchhhhhhhhhcccCCccccc---------------------------------------CHHHHHHHHHHHHHhCh
Confidence 999999999999986553221110 11224567888899999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~d 324 (555)
. .+.+|.|.+|||||||||+|||+|+.+-+|||||||+++|||.-+..+..++ .+.+.|++||||.++.+.++++
T Consensus 120 ~-~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~ 198 (231)
T COG3840 120 A-GFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIAD 198 (231)
T ss_pred h-hHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhh
Confidence 6 5779999999999999999999999999999999999999998887776654 4579999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+++++++|++ .+.|..+++...
T Consensus 199 ~~~fl~~Gri-~~~g~~~~~~~~ 220 (231)
T COG3840 199 RVVFLDNGRI-AAQGSTQELLSG 220 (231)
T ss_pred ceEEEeCCEE-EeeccHHHHhcc
Confidence 9999999997 577877776654
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-43 Score=349.27 Aligned_cols=214 Identities=24% Similarity=0.314 Sum_probs=175.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC-----------ceEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~-----------~~ig 164 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 1 l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLF 80 (243)
T ss_pred CeEeeEEEEECCEEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceE
Confidence 47899999998888999999999999999999999999999999999995 7999999998843 2389
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+.+|+......... ... . ......+...++.++++
T Consensus 81 ~v~q~~~~~~~~t~~~~~~~~~~~~~~-----------~~~--~-------------------~~~~~~~~~~~~~~~l~ 128 (243)
T TIGR01978 81 LAFQYPEEIPGVSNLEFLRSALNARRS-----------ARG--E-------------------EPLDLLDFLKLLKAKLA 128 (243)
T ss_pred eeeccccccCCcCHHHHHHHHHHHhhc-----------ccc--c-------------------ccccHHHHHHHHHHHHH
Confidence 999999888889999987542110000 000 0 00011123456788899
Q ss_pred hcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
.+|++....++++. +|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++.
T Consensus 129 ~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~ 208 (243)
T TIGR01978 129 LLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLN 208 (243)
T ss_pred HcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHH
Confidence 99997555677786 5999999999999999999999999999999999999999998854 4789999999999999
Q ss_pred hh-cceeEEecCCeEeeccCChHHH
Q 008750 321 QL-CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~-~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+ ||+|++|++|++ .+.|+++++
T Consensus 209 ~~~~d~i~~l~~G~i-~~~g~~~~~ 232 (243)
T TIGR01978 209 YIKPDYVHVLLDGRI-VKSGDVELA 232 (243)
T ss_pred hhcCCeEEEEeCCEE-EEecCHHHh
Confidence 98 899999999987 456776543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-43 Score=347.27 Aligned_cols=202 Identities=23% Similarity=0.379 Sum_probs=168.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCCC------------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN------------ 160 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~g~~------------ 160 (555)
|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|++ +|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 57899999998888999999999999999999999999999999999999 9999999998853
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..++|++|++.++ ..||.+|+...... .. .........++.
T Consensus 81 ~~i~~~~q~~~~~-~~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 121 (227)
T cd03260 81 RRVGMVFQKPNPF-PGSIYDNVAYGLRL---------------HG-----------------------IKLKEELDERVE 121 (227)
T ss_pred hhEEEEecCchhc-cccHHHHHHhHHHh---------------cC-----------------------CCcHHHHHHHHH
Confidence 1489999998876 78999998532100 00 000011245567
Q ss_pred HHhhhcCCCccccCCC--CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRL--VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~--~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiSHd~ 316 (555)
++++.+|+.. ..++. +.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++. ..|||+||||+
T Consensus 122 ~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~ 200 (227)
T cd03260 122 EALRKAALWD-EVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNM 200 (227)
T ss_pred HHHHHcCCCh-HHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccH
Confidence 7888999864 33444 5999999999999999999999999999999999999999999988542 27999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCC
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGN 340 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~ 340 (555)
+++..+||+|++|++|++. +.|+
T Consensus 201 ~~~~~~~d~i~~l~~G~i~-~~g~ 223 (227)
T cd03260 201 QQAARVADRTAFLLNGRLV-EFGP 223 (227)
T ss_pred HHHHHhCCEEEEEeCCEEE-EecC
Confidence 9999999999999999874 3343
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-43 Score=349.29 Aligned_cols=209 Identities=21% Similarity=0.296 Sum_probs=174.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~----------- 160 (555)
+|+++||+++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred CEEEEEEEEEECCeeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 378999999998888999999999999999999999999999999999999998 9999998743
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++ .|+.+|+...... .. .........++
T Consensus 81 ~~~i~~v~q~~~~~~-~tv~e~l~~~~~~---------------~~-----------------------~~~~~~~~~~~ 121 (247)
T TIGR00972 81 RRRVGMVFQKPNPFP-MSIYDNIAYGPRL---------------HG-----------------------IKDKKELDEIV 121 (247)
T ss_pred HhheEEEecCcccCC-CCHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24999999988766 9999998532100 00 00011223456
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
..+++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||
T Consensus 122 ~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH 201 (247)
T TIGR00972 122 EESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTH 201 (247)
T ss_pred HHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEec
Confidence 77888889862 456888999999999999999999999999999999999999999999988754 2589999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|++|++. ..|+.+++.
T Consensus 202 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 231 (247)
T TIGR00972 202 NMQQAARISDRTAFFYDGELV-EYGPTEQIF 231 (247)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999974 456665543
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-43 Score=356.06 Aligned_cols=211 Identities=23% Similarity=0.386 Sum_probs=177.6
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------ 161 (555)
+++|+++||+++|+ ++++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 3 DYILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred CceEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 35699999999996 57899999999999999999999999999999999999999999999998532
Q ss_pred eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 ~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.+||++|++. ..+..|+.+|+...... ..........++.
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~---------------------------------------~~~~~~~~~~~~~ 123 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVN---------------------------------------LKLPEDEVRKRVD 123 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHH
Confidence 4899999974 23567999998532100 0001112234577
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~ 316 (555)
.+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .|.|||++|||+
T Consensus 124 ~~l~~~gL~-~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~ 202 (283)
T PRK13636 124 NALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI 202 (283)
T ss_pred HHHHHCCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH
Confidence 788999996 567899999999999999999999999999999999999999999988887743 489999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++..+||||++|++|++ .+.|.++++..
T Consensus 203 ~~~~~~~dri~~l~~G~i-~~~g~~~~~~~ 231 (283)
T PRK13636 203 DIVPLYCDNVFVMKEGRV-ILQGNPKEVFA 231 (283)
T ss_pred HHHHHhCCEEEEEECCEE-EEeCCHHHHhc
Confidence 999999999999999987 56788776654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=353.55 Aligned_cols=213 Identities=16% Similarity=0.373 Sum_probs=175.7
Q ss_pred CccEEEEeEEEEeCC---------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----
Q 008750 95 SSGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----- 160 (555)
.++|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 356999999999962 469999999999999999999999999999999999999999999998743
Q ss_pred -----ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 161 -----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 161 -----~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
..++|++|++. +++..|+.+++...... . ..+...
T Consensus 82 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~----------------~----------------------~~~~~~ 123 (267)
T PRK15112 82 YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRL----------------N----------------------TDLEPE 123 (267)
T ss_pred hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHh----------------c----------------------cCCCHH
Confidence 25999999974 44566888876432100 0 000111
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPM 309 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tv 309 (555)
...+.+.++++.+|+.....++.+.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|.+ .|.||
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tv 203 (267)
T PRK15112 124 QREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISY 203 (267)
T ss_pred HHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEE
Confidence 22345778899999965566788899999999999999999999999999999999999999999988754 48899
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
|+||||++++..+||+|++|++|++. ..|++.++..
T Consensus 204 iivsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~~ 239 (267)
T PRK15112 204 IYVTQHLGMMKHISDQVLVMHQGEVV-ERGSTADVLA 239 (267)
T ss_pred EEEeCCHHHHHHhcCEEEEEECCEEE-ecCCHHHHhc
Confidence 99999999999999999999999874 5677766543
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=353.02 Aligned_cols=210 Identities=25% Similarity=0.464 Sum_probs=174.2
Q ss_pred cEEEEeEEEEeC---------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------
Q 008750 97 GVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------- 160 (555)
+|+++||++.|+ ++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 589999999995 3579999999999999999999999999999999999999999999998743
Q ss_pred ------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 161 ------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
..|+|++|++. +.+..||.+|+...... . ..+..
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~--------------~------------------------~~~~~ 123 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRH--------------L------------------------TSLDE 123 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHH--------------h------------------------cCCCH
Confidence 14999999973 44568999987532100 0 00111
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCce
Q 008750 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVP 308 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~t 308 (555)
.....++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|
T Consensus 124 ~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~t 203 (265)
T TIGR02769 124 SEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTA 203 (265)
T ss_pred HHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcE
Confidence 122456778889999964567889999999999999999999999999999999999999999888887743 4899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+||||++++..+||++++|++|++. ..|+.+++.
T Consensus 204 iiivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (265)
T TIGR02769 204 YLFITHDLRLVQSFCQRVAVMDKGQIV-EECDVAQLL 239 (265)
T ss_pred EEEEeCCHHHHHHHhcEEEEEeCCEEE-EECCHHHHc
Confidence 999999999999999999999999874 567665543
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-43 Score=350.82 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=176.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------------- 160 (555)
|+++||++.|+++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 1 i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~ 80 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEK 80 (252)
T ss_pred CEEEEEEEEeCCeeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchh
Confidence 478999999988889999999999999999999999999999999999999999999998742
Q ss_pred ------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 ------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 ------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..++|++|++.+++..|+.+|+....... . ......
T Consensus 81 ~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~--------------~------------------------~~~~~~ 122 (252)
T TIGR03005 81 HLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLV--------------L------------------------GMARAE 122 (252)
T ss_pred HHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHh--------------c------------------------CCCHHH
Confidence 24999999998888899999985321000 0 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
....+.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|+|
T Consensus 123 ~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 201 (252)
T TIGR03005 123 AEKRAMELLDMVGLA-DKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTML 201 (252)
T ss_pred HHHHHHHHHHHcCCh-hHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 234567788889986 456888999999999999999999999999999999999999999999887753 489999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++..+||++++|++|+++ ..|++.++.
T Consensus 202 ivsH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 235 (252)
T TIGR03005 202 LVTHEMGFAREFADRVCFFDKGRIV-EQGKPDEIF 235 (252)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 567776654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-43 Score=350.63 Aligned_cols=211 Identities=25% Similarity=0.392 Sum_probs=174.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----c---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----M--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~--------- 161 (555)
++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ .
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999998864 1
Q ss_pred -----eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 162 -----KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 162 -----~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.++|++|++. +++..|+.+|+...+.. . . ......
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~--------------~-~-----------------------~~~~~~ 126 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMA--------------V-G-----------------------ARHYGD 126 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHH--------------h-c-----------------------cCcHHH
Confidence 4899999974 44566888877432100 0 0 000011
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
...++.++++.+|+.....++.+.+|||||+|||+|||||+.+|+||||||||++||+.+.+++.+.|++ .|.|||
T Consensus 127 ~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 206 (258)
T PRK11701 127 IRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVV 206 (258)
T ss_pred HHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEE
Confidence 2345677888899864456889999999999999999999999999999999999999999999888742 489999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++..+||+|++|++|++. +.|..+++.
T Consensus 207 ~isH~~~~~~~~~d~i~~l~~g~i~-~~~~~~~~~ 240 (258)
T PRK11701 207 IVTHDLAVARLLAHRLLVMKQGRVV-ESGLTDQVL 240 (258)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 566665543
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-43 Score=369.05 Aligned_cols=194 Identities=24% Similarity=0.344 Sum_probs=165.7
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEecccccCcCc
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEFEVSMSR 176 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~Q~~~~~~~~ 176 (555)
.+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..++|++|++.+++++
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999998743 2599999999988889
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
||.+|+...... .........+++.++++.+|+. ...+++
T Consensus 122 Tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~e~L~~~gL~-~~~~~~ 161 (400)
T PRK10070 122 TVLDNTAFGMEL---------------------------------------AGINAEERREKALDALRQVGLE-NYAHSY 161 (400)
T ss_pred CHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCCC-hhhhcC
Confidence 999998542100 0001112345677889999996 467899
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|.+ .++||||||||++++..+||+|++|++|
T Consensus 162 ~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G 241 (400)
T PRK10070 162 PDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNG 241 (400)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999887742 5899999999999999999999999999
Q ss_pred eEeeccCChHHHH
Q 008750 333 VSRTYEGNYSQYV 345 (555)
Q Consensus 333 ~~~~~~G~y~~~~ 345 (555)
++. +.|...++.
T Consensus 242 ~i~-~~g~~~~l~ 253 (400)
T PRK10070 242 EVV-QVGTPDEIL 253 (400)
T ss_pred EEE-ecCCHHHHH
Confidence 874 567666554
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-43 Score=354.95 Aligned_cols=208 Identities=20% Similarity=0.287 Sum_probs=172.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig 164 (555)
+|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 1 ml~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred CeEEEEEEEEcCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 48999999999888899999999999999999999999999999999999999999999988542 489
Q ss_pred EEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++.. .+..++.+|+...... . .........++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l 121 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRN---------------L------------------------GVPEAEITRRVDEAL 121 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHH
Confidence 99999753 3455787776432100 0 001112234566778
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|||+||||++++.
T Consensus 122 ~~~~l~-~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~ 200 (271)
T PRK13638 122 TLVDAQ-HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIY 200 (271)
T ss_pred HHcCCH-hHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 888885 456888999999999999999999999999999999999999999999988753 4889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|...++.
T Consensus 201 ~~~d~i~~l~~G~i~-~~g~~~~~~ 224 (271)
T PRK13638 201 EISDAVYVLRQGQIL-THGAPGEVF 224 (271)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999874 567666543
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=346.90 Aligned_cols=204 Identities=23% Similarity=0.335 Sum_probs=168.3
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v 166 (555)
|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYV 80 (230)
T ss_pred CEEEeEEEEeCCeEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEe
Confidence 478999999998889999999999999999999999999999999999999999999998743 259999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+....... . ......+.++++.+
T Consensus 81 ~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~-~~~~~~~~~~l~~~ 118 (230)
T TIGR03410 81 PQGREIFPRLTVEENLLTGLAAL-----------------------------------------P-RRSRKIPDEIYELF 118 (230)
T ss_pred ccCCcccCCCcHHHHHHHHHHhc-----------------------------------------C-cchHHHHHHHHHHH
Confidence 99998877889999985322100 0 00011223344444
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~ 322 (555)
++-....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+||||++++..+
T Consensus 119 ~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 198 (230)
T TIGR03410 119 PVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFAREL 198 (230)
T ss_pred HhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHh
Confidence 4212345788999999999999999999999999999999999999999999988753 478999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|+++++|++. ..|+.++.
T Consensus 199 ~d~v~~l~~g~i~-~~~~~~~~ 219 (230)
T TIGR03410 199 ADRYYVMERGRVV-ASGAGDEL 219 (230)
T ss_pred CCEEEEEECCEEE-EECCHHHc
Confidence 9999999999874 55665543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=352.08 Aligned_cols=217 Identities=21% Similarity=0.364 Sum_probs=179.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc----------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM---------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~---------- 161 (555)
+++|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 2 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (262)
T PRK09984 2 QTIIRVEKLAKTFNQHQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDI 81 (262)
T ss_pred CcEEEEeeEEEEeCCeEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhH
Confidence 35799999999999889999999999999999999999999999999999999986 49999988432
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.+++.+||.+|+............ ... ........
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~------------------------------~~~-~~~~~~~~ 130 (262)
T PRK09984 82 RKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWR------------------------------TCF-SWFTREQK 130 (262)
T ss_pred HHHHhheEEEccccccccCCcHHHHHHhhhcccccchh------------------------------hhc-ccccHHHH
Confidence 489999999888888999998532110000000 000 00011224
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii 312 (555)
.++.++++.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+|
T Consensus 131 ~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~ 209 (262)
T PRK09984 131 QRALQALTRVGMV-HFAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVT 209 (262)
T ss_pred HHHHHHHHHcCCH-HHHhCCccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 5678889999996 467889999999999999999999999999999999999999999999988753 47899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++ .+.|+++++
T Consensus 210 tH~~~~~~~~~d~i~~l~~g~i-~~~g~~~~~ 240 (262)
T PRK09984 210 LHQVDYALRYCERIVALRQGHV-FYDGSSQQF 240 (262)
T ss_pred eCCHHHHHHhCCEEEEEECCEE-EEeCCHHHh
Confidence 9999999999999999999997 577888765
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=384.96 Aligned_cols=215 Identities=34% Similarity=0.521 Sum_probs=184.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc-ccC
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF-EVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~-~~~ 173 (555)
.++|+++||++.|+++++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++ ....|||++|++ .++
T Consensus 322 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 400 (556)
T PRK11819 322 DKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 400 (556)
T ss_pred CeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-CceEEEEEeCchhhcC
Confidence 467999999999998889999999999999999999999999999999999999999999995 456899999996 566
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+|+...... . ... .....+..+++.+|+.....
T Consensus 401 ~~~tv~e~l~~~~~~---------------~------------------------~~~--~~~~~~~~~l~~~~l~~~~~ 439 (556)
T PRK11819 401 PNKTVWEEISGGLDI---------------I------------------------KVG--NREIPSRAYVGRFNFKGGDQ 439 (556)
T ss_pred CCCCHHHHHHhhccc---------------c------------------------ccc--ccHHHHHHHHHhCCCChhHh
Confidence 778999997532100 0 000 00122446788899965456
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC-C
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~-G 332 (555)
++++.+|||||||||+|||||+.+|++|||||||++||+.++.+|.++|.+...|||+||||++++..+||+|++|++ |
T Consensus 440 ~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vtHd~~~~~~~~d~i~~l~~~g 519 (556)
T PRK11819 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGCAVVISHDRWFLDRIATHILAFEGDS 519 (556)
T ss_pred cCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHhCCEEEEEECCC
Confidence 899999999999999999999999999999999999999999999999988767999999999999999999999986 7
Q ss_pred eEeeccCChHHHHHHHHHH
Q 008750 333 VSRTYEGNYSQYVLEKAAW 351 (555)
Q Consensus 333 ~~~~~~G~y~~~~~~~~~~ 351 (555)
++..|.|+|++|.+.+++.
T Consensus 520 ~~~~~~g~~~~~~~~~~~~ 538 (556)
T PRK11819 520 QVEWFEGNFQEYEEDKKRR 538 (556)
T ss_pred eEEEecCCHHHHHHHHHHH
Confidence 8888999999998765533
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-43 Score=348.30 Aligned_cols=212 Identities=21% Similarity=0.280 Sum_probs=176.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~---------- 160 (555)
+.|+++||+++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred ceEEEEeeEEEECCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 358999999999888899999999999999999999999999999999999974 79999998853
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..|+|++|++.+++..||.+|+...... ... .....+..+.+.
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~~~~~ 124 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKL---------------NRL----------------------VKSKKELQERVR 124 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHh---------------ccc----------------------cCCHHHHHHHHH
Confidence 2599999999877889999998542110 000 000112234567
Q ss_pred HHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecC
Q 008750 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd 315 (555)
++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+||||
T Consensus 125 ~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~ 204 (250)
T PRK14247 125 WALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHF 204 (250)
T ss_pred HHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 7788888753 346888999999999999999999999999999999999999999999998754 37899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++..+||+|++|++|++ ...|+.+++.
T Consensus 205 ~~~~~~~~d~i~~l~~G~i-~~~g~~~~~~ 233 (250)
T PRK14247 205 PQQAARISDYVAFLYKGQI-VEWGPTREVF 233 (250)
T ss_pred HHHHHHhcCEEEEEECCeE-EEECCHHHHH
Confidence 9999999999999999987 4567766553
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-43 Score=348.52 Aligned_cols=211 Identities=19% Similarity=0.296 Sum_probs=172.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~-------- 160 (555)
.+|.|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.+
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 3 SPPKMEARGLSFFYGDFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred CCcEEEEeeeEEEECCeeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 3567999999999988889999999999999999999999999999999999974 689999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++ .||.+|+...... .. . .......
T Consensus 83 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~ 123 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFP-KSIFENVAYGLRV---------------NG-V----------------------KDKAYLA 123 (253)
T ss_pred HHHhhcEEEEecCCCCCc-CcHHHHHHHHHHH---------------cC-C----------------------CCHHHHH
Confidence 24999999987765 5999998542100 00 0 0001123
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 124 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii 203 (253)
T PRK14242 124 ERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203 (253)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45666777777742 245788899999999999999999999999999999999999999999998764 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++++..+||+|++|++|++. ..|..+++
T Consensus 204 ~tH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14242 204 VTHNMQQAARVSDVTAFFYMGKLI-EVGPTEQI 235 (253)
T ss_pred EEecHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999874 45665554
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-43 Score=349.67 Aligned_cols=223 Identities=20% Similarity=0.365 Sum_probs=177.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
.+|+++||++.|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 4 PLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred ceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 46999999999998899999999999999999999999999999999999999999999998853 2489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+......... ......+... + .. ..........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~-----~~~~~~~~~~--~----------------~~-~~~~~~~~~~~~~~l~ 139 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLK-----TGLFSGLLKT--P----------------AF-RRAESEALDRAATWLE 139 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcccc-----chhhhhhccc--c----------------cc-ccchhHHHHHHHHHHH
Confidence 999999888889999998643110000 0000000000 0 00 0000112345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||+||||++++.
T Consensus 140 ~~gl~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~ 218 (255)
T PRK11300 140 RVGLL-EHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVM 218 (255)
T ss_pred hCChh-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH
Confidence 99985 467899999999999999999999999999999999999999999999988742 3889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+||+|++|++|++. +.|..+++
T Consensus 219 ~~~d~i~~l~~g~i~-~~~~~~~~ 241 (255)
T PRK11300 219 GISDRIYVVNQGTPL-ANGTPEEI 241 (255)
T ss_pred HhCCEEEEEECCeEE-ecCCHHHH
Confidence 999999999999974 56665544
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-43 Score=360.08 Aligned_cols=210 Identities=23% Similarity=0.342 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCCCc-------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~g~~~------- 161 (555)
+|+++||++.|++ ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 5899999999975 469999999999999999999999999999999999997 4899999998642
Q ss_pred -------eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 162 -------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 162 -------~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
.|+|++|++. +.+.+|+.+++....... .....
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~--------------------------------------~~~~~ 124 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH--------------------------------------QGGNK 124 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHh--------------------------------------cCCCH
Confidence 4999999984 567788887764321000 00111
Q ss_pred ccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CC
Q 008750 233 DTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QD 306 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~ 306 (555)
.+..+++.++|+.+||.. ...++++++|||||+|||+|||||+.+|+|||+||||++||+.++..+.++|++ .|
T Consensus 125 ~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g 204 (326)
T PRK11022 125 KTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204 (326)
T ss_pred HHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcC
Confidence 233456788999999963 356889999999999999999999999999999999999999999988887643 58
Q ss_pred ceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 307 VPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 307 ~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|+|+||||++++.++||+|++|.+|+++ ..|+..+..
T Consensus 205 ~til~iTHdl~~~~~~adri~vm~~G~iv-e~g~~~~~~ 242 (326)
T PRK11022 205 MALVLITHDLALVAEAAHKIIVMYAGQVV-ETGKAHDIF 242 (326)
T ss_pred CEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 99999999999999999999999999975 456655443
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=359.51 Aligned_cols=213 Identities=20% Similarity=0.362 Sum_probs=176.6
Q ss_pred CCccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc-----
Q 008750 94 ISSGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM----- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~----- 161 (555)
..++|+++||++.|+ ...+|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~ 88 (330)
T PRK09473 9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPE 88 (330)
T ss_pred CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCH
Confidence 456799999999994 257999999999999999999999999999999999999996 99999998542
Q ss_pred ---------eEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc
Q 008750 162 ---------KIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV 230 (555)
Q Consensus 162 ---------~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (555)
.|+||+|++ .+.+.+|+.+++...... . ...
T Consensus 89 ~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~---------------~-----------------------~~~ 130 (330)
T PRK09473 89 KELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLML---------------H-----------------------KGM 130 (330)
T ss_pred HHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHH---------------h-----------------------cCC
Confidence 599999998 566778998887532100 0 001
Q ss_pred CcccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----C
Q 008750 231 NLDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (555)
Q Consensus 231 ~~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~ 304 (555)
...+...++.++|+.+|++. ...++++++|||||+|||+|||||+.+|++||+||||++||+.++..+.++|+ +
T Consensus 131 ~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~ 210 (330)
T PRK09473 131 SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKRE 210 (330)
T ss_pred CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHH
Confidence 11223456778888999864 23578999999999999999999999999999999999999999998888764 3
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+.|+|+||||+.++.++||+|++|.+|+++ ..|+.+++.
T Consensus 211 ~g~til~iTHdl~~~~~~~Dri~vm~~G~iv-e~g~~~~i~ 250 (330)
T PRK09473 211 FNTAIIMITHDLGVVAGICDKVLVMYAGRTM-EYGNARDVF 250 (330)
T ss_pred cCCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 4899999999999999999999999999974 557766554
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=354.05 Aligned_cols=207 Identities=22% Similarity=0.313 Sum_probs=171.9
Q ss_pred EEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 98 VKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 98 i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
|+++||+++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 899999999974 369999999999999999999999999999999999999999999998743
Q ss_pred --ceEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 --MKIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 --~~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..|+|++|++. ..+..|+.+|+...... . ....+....
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~ 123 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQN---------------F------------------------GVSQEEAEA 123 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHH---------------c------------------------CCCHHHHHH
Confidence 24899999973 23457999987532100 0 001112234
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEec
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSH 314 (555)
++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|||
T Consensus 124 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH 203 (280)
T PRK13649 124 LAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTH 203 (280)
T ss_pred HHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEec
Confidence 5677888889864556889999999999999999999999999999999999999999999988753 4899999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|++++..+||+|++|++|++. +.|..+++
T Consensus 204 ~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (280)
T PRK13649 204 LMDDVANYADFVYVLEKGKLV-LSGKPKDI 232 (280)
T ss_pred cHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999874 45665554
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=350.74 Aligned_cols=213 Identities=25% Similarity=0.374 Sum_probs=176.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 9 ~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 88 (265)
T PRK10575 9 DTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVA 88 (265)
T ss_pred CceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheE
Confidence 3469999999999888899999999999999999999999999999999999999999999988532 499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+.+|+....... .... .........++..+++
T Consensus 89 ~v~q~~~~~~~~tv~e~l~~~~~~~--------------~~~~---------------------~~~~~~~~~~~~~~l~ 133 (265)
T PRK10575 89 YLPQQLPAAEGMTVRELVAIGRYPW--------------HGAL---------------------GRFGAADREKVEEAIS 133 (265)
T ss_pred EeccCCCCCCCccHHHHHHhCcccc--------------cccc---------------------cCCCHHHHHHHHHHHH
Confidence 9999987778889999975321000 0000 0000112345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.+++.+.++|.+ .+.|||+||||++++.
T Consensus 134 ~~~l~-~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~ 212 (265)
T PRK10575 134 LVGLK-PLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAA 212 (265)
T ss_pred HcCCH-HHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 89985 467889999999999999999999999999999999999999999988887742 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+||+|++|++|++. ..|..+++
T Consensus 213 ~~~d~i~~l~~G~i~-~~~~~~~~ 235 (265)
T PRK10575 213 RYCDYLVALRGGEMI-AQGTPAEL 235 (265)
T ss_pred HhCCEEEEEECCeEE-EecCHHHh
Confidence 999999999999974 55665544
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-43 Score=345.73 Aligned_cols=207 Identities=22% Similarity=0.325 Sum_probs=170.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred cEEEEEeEEEeeCCceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 46999999999988889999999999999999999999999999999999999999999998853 1499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+....... ........+.++++
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~-----------------------------------------~~~~~~~~~~~~l~ 122 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFA-----------------------------------------ERDQFQERIKWVYE 122 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhcc-----------------------------------------ChhHHHHHHHHHHH
Confidence 9999998877789999985421000 00001112233344
Q ss_pred hc-CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 245 EL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~l-gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
.+ ++. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|+ +.+.|||++|||++++.
T Consensus 123 ~~~~l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~ 201 (237)
T PRK11614 123 LFPRLH-ERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQAL 201 (237)
T ss_pred HHHHHH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHH
Confidence 44 232 23467788999999999999999999999999999999999999999988774 35899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++||+|++|++|++ .+.|+.++..
T Consensus 202 ~~~d~i~~l~~G~i-~~~~~~~~~~ 225 (237)
T PRK11614 202 KLADRGYVLENGHV-VLEDTGDALL 225 (237)
T ss_pred hhCCEEEEEeCCEE-EeeCCHHHHh
Confidence 99999999999987 4667766543
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=363.92 Aligned_cols=201 Identities=24% Similarity=0.322 Sum_probs=173.3
Q ss_pred EEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEeccc
Q 008750 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQEF 170 (555)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~Q~~ 170 (555)
|+|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|++|++
T Consensus 1 ~~~~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~ 80 (363)
T TIGR01186 1 KKTGGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQF 80 (363)
T ss_pred CccCCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCC
Confidence 46888889999999999999999999999999999999999999999999999843 2599999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++++||.+|+...... ......+..+++.++++.+||.
T Consensus 81 ~l~~~~TV~eNi~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~vgL~- 120 (363)
T TIGR01186 81 ALFPHMTILQNTSLGPEL---------------------------------------LGWPEQERKEKALELLKLVGLE- 120 (363)
T ss_pred cCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhcCCc-
Confidence 999999999998542100 0011223456788899999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.+.+. +.++|||+||||++++..+||+|
T Consensus 121 ~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI 200 (363)
T TIGR01186 121 EYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRI 200 (363)
T ss_pred hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEE
Confidence 57899999999999999999999999999999999999999999999988764 34899999999999999999999
Q ss_pred EEecCCeEeeccCChHHHHH
Q 008750 327 VETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 327 ~~l~~G~~~~~~G~y~~~~~ 346 (555)
++|++|++ ...|...++..
T Consensus 201 ~vl~~G~i-v~~g~~~ei~~ 219 (363)
T TIGR01186 201 VIMKAGEI-VQVGTPDEILR 219 (363)
T ss_pred EEEeCCEE-EeeCCHHHHHh
Confidence 99999987 45677766554
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=348.78 Aligned_cols=212 Identities=26% Similarity=0.360 Sum_probs=176.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++|++++|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEEeEEEEECCEEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 58999999999988899999999999999999999999999999999999999999999988531 49999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.+++..|+.+|+.......... . .........++.++++.+
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~----------~-------------------------~~~~~~~~~~~~~~l~~~ 126 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSL----------W-------------------------GRLSAEDNARVNQAMEQT 126 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhh----------c-------------------------cCCCHHHHHHHHHHHHHc
Confidence 99988777789999875321000000 0 000111234567788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||++|||++++.++|
T Consensus 127 ~l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~ 205 (255)
T PRK11231 127 RIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYC 205 (255)
T ss_pred CCH-HHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhc
Confidence 985 456889999999999999999999999999999999999999999999988753 4889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|++|++|++. ..|.++++.
T Consensus 206 d~i~~l~~G~i~-~~~~~~~~~ 226 (255)
T PRK11231 206 DHLVVLANGHVM-AQGTPEEVM 226 (255)
T ss_pred CEEEEEECCeEE-EEcCHHHhc
Confidence 999999999874 566665543
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-43 Score=339.49 Aligned_cols=196 Identities=24% Similarity=0.359 Sum_probs=166.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~ 169 (555)
|+++|++++|+++. .|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 1 i~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 78 (211)
T cd03298 1 VRLDKIRFSYGEQP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRPVSMLFQE 78 (211)
T ss_pred CEEEeEEEEeCCEe--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCHhHccEEEEecc
Confidence 47899999998754 399999999999999999999999999999999999999999988532 59999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+........ ......+.++.++++.+|+.
T Consensus 79 ~~~~~~~tv~enl~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l~ 119 (211)
T cd03298 79 NNLFAHLTVEQNVGLGLSPGL---------------------------------------KLTAEDRQAIEVALARVGLA 119 (211)
T ss_pred cccCCCCcHHHHHhccccccc---------------------------------------CccHHHHHHHHHHHHHcCCH
Confidence 988778899999853211000 00001234567788889986
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~ 198 (211)
T cd03298 120 -GLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQR 198 (211)
T ss_pred -HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCE
Confidence 456888999999999999999999999999999999999999999999988753 489999999999999999999
Q ss_pred eEEecCCeEe
Q 008750 326 IVETEMGVSR 335 (555)
Q Consensus 326 i~~l~~G~~~ 335 (555)
|++|++|++.
T Consensus 199 i~~l~~G~i~ 208 (211)
T cd03298 199 VVFLDNGRIA 208 (211)
T ss_pred EEEEECCEEe
Confidence 9999999874
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-42 Score=347.40 Aligned_cols=212 Identities=21% Similarity=0.259 Sum_probs=173.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~--------- 161 (555)
.+|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 3 FAIETVNLRVYYGSNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred ceEEEEeEEEEeCCeeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 468999999999888899999999999999999999999999999999999987 499999987432
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++.+++..||.+|+...... .... ........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~~~----------------------~~~~~~~~~ 125 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKL---------------NGLV----------------------KSKKELDER 125 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHh---------------cCcc----------------------CCHHHHHHH
Confidence 489999999887788999998532100 0000 000112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.+..++.+.|++ .+.|||+||
T Consensus 126 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~s 205 (253)
T PRK14267 126 VEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVT 205 (253)
T ss_pred HHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEE
Confidence 566677777642 245788999999999999999999999999999999999999999999988754 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++. ..|...++.
T Consensus 206 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 236 (253)
T PRK14267 206 HSPAQAARVSDYVAFLYLGKLI-EVGPTRKVF 236 (253)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999974 556665543
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=375.58 Aligned_cols=209 Identities=38% Similarity=0.643 Sum_probs=187.9
Q ss_pred CCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc
Q 008750 93 SISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~ 171 (555)
.....++++|+++.|++ +++++++||.|.+|+++|||||||+|||||||+|+|...|.+|+|.+. ...++||++|+..
T Consensus 317 ~g~~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g-~~v~igyf~Q~~~ 395 (530)
T COG0488 317 LGKLVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-ETVKIGYFDQHRD 395 (530)
T ss_pred CCCeeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeC-CceEEEEEEehhh
Confidence 45678999999999965 689999999999999999999999999999999999999999999987 4589999999973
Q ss_pred -cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 172 -VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 172 -~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
+....|+.+++...+. ...+..++.+|..|+|+.
T Consensus 396 ~l~~~~t~~d~l~~~~~---------------------------------------------~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 396 ELDPDKTVLEELSEGFP---------------------------------------------DGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred hcCccCcHHHHHHhhCc---------------------------------------------cccHHHHHHHHHHcCCCh
Confidence 3456688877643210 111566788999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+...+++..||||||.|+.||+.++.+|+||||||||||||.++++.|.+.|.++.+|||+||||++|++.+|++||+++
T Consensus 431 ~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~Gtvl~VSHDr~Fl~~va~~i~~~~ 510 (530)
T COG0488 431 EDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFEGTVLLVSHDRYFLDRVATRIWLVE 510 (530)
T ss_pred HHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCCCeEEEEeCCHHHHHhhcceEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeccCChHHHHHHH
Q 008750 331 MGVSRTYEGNYSQYVLEK 348 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~~ 348 (555)
+ .+..|.|+|++|.+.+
T Consensus 511 ~-~~~~~~g~y~~y~~~~ 527 (530)
T COG0488 511 D-KVEEFEGGYEDYLEQK 527 (530)
T ss_pred C-ceeEcCCCHHHHHHhh
Confidence 9 8888999999998754
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-43 Score=353.46 Aligned_cols=208 Identities=24% Similarity=0.389 Sum_probs=174.7
Q ss_pred ccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
++|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHK 82 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhh
Confidence 36899999999963 4599999999999999999999999999999999999999999999998542 5
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|++|++. .++..||.+|+...... ..........++.+
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~~~~ 123 (279)
T PRK13650 83 IGMVFQNPDNQFVGATVEDDVAFGLEN---------------------------------------KGIPHEEMKERVNE 123 (279)
T ss_pred ceEEEcChHHhcccccHHHHHHhhHHh---------------------------------------CCCCHHHHHHHHHH
Confidence 899999974 55778999998532100 00112223456778
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++
T Consensus 124 ~l~~~gL~-~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~ 202 (279)
T PRK13650 124 ALELVGMQ-DFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLD 202 (279)
T ss_pred HHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHH
Confidence 89999996 567899999999999999999999999999999999999999999999887642 4899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++. .||+|++|++|++. ..|+..++.
T Consensus 203 ~~~-~~dri~~l~~G~i~-~~g~~~~~~ 228 (279)
T PRK13650 203 EVA-LSDRVLVMKNGQVE-STSTPRELF 228 (279)
T ss_pred HHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 995 79999999999974 467765544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=348.12 Aligned_cols=209 Identities=22% Similarity=0.289 Sum_probs=172.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
.++|+++|+++.|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 10 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 10 QPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred ceeEEEeeeEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 3569999999999888899999999999999999999999999999999999985 89999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.++. .|+.+|+...... . .........
T Consensus 90 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~------------------------~~~~~~~~~ 129 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFP-MSIYDNVAYGPRI---------------H------------------------GANKKDLDG 129 (258)
T ss_pred HHhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------c------------------------CCCHHHHHH
Confidence 14899999988765 8999998532100 0 000111233
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 130 ~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiiv 209 (258)
T PRK14268 130 VVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIV 209 (258)
T ss_pred HHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEE
Confidence 466677777773 2345788999999999999999999999999999999999999999999988754 37899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. +.|...++
T Consensus 210 sH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 240 (258)
T PRK14268 210 THNMQQAARISDYTGFFLMGELI-EFGQTRQI 240 (258)
T ss_pred ECCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999974 55665554
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-43 Score=322.13 Aligned_cols=211 Identities=25% Similarity=0.421 Sum_probs=182.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------- 160 (555)
+.|+++|+.++||...+|++|||+-++|+++.|||.+||||||+||||.=+..|+.|.|.++|..
T Consensus 5 ~~l~v~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad 84 (256)
T COG4598 5 NALEVEDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPAD 84 (256)
T ss_pred cceehhHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCC
Confidence 45899999999999999999999999999999999999999999999999999999999998742
Q ss_pred --------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 161 --------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 161 --------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
.+.|+|+|+++++..+||.||+..+.-.- + ....
T Consensus 85 ~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhV-----------------------L---------------g~~k 126 (256)
T COG4598 85 KRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHV-----------------------L---------------GVSK 126 (256)
T ss_pred HHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHh-----------------------h---------------cCCH
Confidence 14799999999999999999987542110 0 2234
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH---HcCCCceE
Q 008750 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPM 309 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~---l~~~~~tv 309 (555)
.+..++++.+|.++|+. +..+.+|..|||||+||++|||||+.+|+++|+|||||+|||+-.-.+... |.+.|+|+
T Consensus 127 ~ea~e~Ae~~L~kVGi~-ek~~~YP~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTM 205 (256)
T COG4598 127 AEAIERAEKYLAKVGIA-EKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTM 205 (256)
T ss_pred HHHHHHHHHHHHHhCch-hhhhcCccccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeE
Confidence 45567788999999996 456799999999999999999999999999999999999999987776665 45679999
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++|||.+.|+.+++++|++|++|.+ .-.|...+...
T Consensus 206 v~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P~qvf~ 241 (256)
T COG4598 206 VVVTHEMGFARDVSSHVIFLHQGKI-EEEGPPEQVFG 241 (256)
T ss_pred EEEeeehhHHHhhhhheEEeeccee-cccCChHHHhc
Confidence 9999999999999999999999986 55677665543
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=354.57 Aligned_cols=210 Identities=20% Similarity=0.279 Sum_probs=172.4
Q ss_pred ccEEEEeEEEEeCCc-----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
..|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 459999999999764 49999999999999999999999999999999999999999999998742
Q ss_pred -----ceEEEEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 -----MKIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 -----~~ig~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..|+|++|++.. .+..|+.+|+...... . ......
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~ 125 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVN---------------L------------------------GENKQE 125 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHH---------------c------------------------CCCHHH
Confidence 148999999742 2456999987532100 0 000111
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
...++.++++.++++....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||
T Consensus 126 ~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii 205 (289)
T PRK13645 126 AYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRII 205 (289)
T ss_pred HHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2345667788889864567899999999999999999999999999999999999999999999887643 488999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++.++||+|++|++|++. +.|...++.
T Consensus 206 iisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 239 (289)
T PRK13645 206 MVTHNMDQVLRIADEVIVMHEGKVI-SIGSPFEIF 239 (289)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999999999999974 456655543
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-43 Score=353.05 Aligned_cols=206 Identities=27% Similarity=0.343 Sum_probs=174.5
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEE
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIA 164 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig 164 (555)
.++|+++.|++.++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 26 ~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~ 105 (269)
T cd03294 26 SKEEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKIS 105 (269)
T ss_pred hhhhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEE
Confidence 56799999999999999999999999999999999999999999999999999999998742 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..||.+|+...... . .........++.++++
T Consensus 106 ~v~q~~~~~~~~tv~e~l~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~ 146 (269)
T cd03294 106 MVFQSFALLPHRTVLENVAFGLEV---------------Q------------------------GVPRAEREERAAEALE 146 (269)
T ss_pred EEecCcccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHH
Confidence 999999887889999998532100 0 0001122345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .|.|||++|||++++.
T Consensus 147 ~~~l~-~~~~~~~~~LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~ 225 (269)
T cd03294 147 LVGLE-GWEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEAL 225 (269)
T ss_pred HcCCH-hHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 99996 456889999999999999999999999999999999999999999999987743 3799999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|..+++.
T Consensus 226 ~~~d~v~~l~~G~i~-~~g~~~~~~ 249 (269)
T cd03294 226 RLGDRIAIMKDGRLV-QVGTPEEIL 249 (269)
T ss_pred HhcCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999874 456655543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=350.32 Aligned_cols=213 Identities=23% Similarity=0.303 Sum_probs=177.2
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
...|+++||+++|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 5 ~~~l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 5 VARLRGEQLTLGYGKYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred ccEEEEEEEEEEECCEEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 346999999999998889999999999999999999999999999999999999999999998753 2489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+.+|+........ ... .........++.++++
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~--------------~~~---------------------~~~~~~~~~~~~~~l~ 129 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQ--------------PLF---------------------TRWRKEDEEAVTKAMQ 129 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCccccc--------------ccc---------------------cCCCHHHHHHHHHHHH
Confidence 99999988888899998753210000 000 0000112345677888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||++|||++++.
T Consensus 130 ~~~l~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~ 208 (265)
T PRK10253 130 ATGIT-HLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQAC 208 (265)
T ss_pred HcCCH-HHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 89986 467899999999999999999999999999999999999999999999888743 4889999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.+||+|++|++|++. ..|...++
T Consensus 209 ~~~d~i~~l~~G~i~-~~g~~~~~ 231 (265)
T PRK10253 209 RYASHLIALREGKIV-AQGAPKEI 231 (265)
T ss_pred HhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999974 55665544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=389.42 Aligned_cols=207 Identities=30% Similarity=0.499 Sum_probs=179.7
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc--
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-- 171 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~-- 171 (555)
..++|+++||++.|+++++|+|+||+|.+|+++||+|+||||||||+|+|+|+++|++|+|.+++ ...|||++|+..
T Consensus 309 ~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~-~~~igy~~Q~~~~~ 387 (638)
T PRK10636 309 PNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK-GIKLGYFAQHQLEF 387 (638)
T ss_pred CCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-CEEEEEecCcchhh
Confidence 45679999999999988899999999999999999999999999999999999999999999874 357999999742
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+....|+.+++... ........+..+|..+||...
T Consensus 388 l~~~~~~~~~~~~~---------------------------------------------~~~~~~~~~~~~L~~~~l~~~ 422 (638)
T PRK10636 388 LRADESPLQHLARL---------------------------------------------APQELEQKLRDYLGGFGFQGD 422 (638)
T ss_pred CCccchHHHHHHHh---------------------------------------------CchhhHHHHHHHHHHcCCChh
Confidence 33344554443110 001123457788999999755
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
..++++.+|||||||||+||++|+.+|+||||||||||||+.++..|.++|.++++|||+||||++++..+||+|++|++
T Consensus 423 ~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~gtvi~vSHd~~~~~~~~d~i~~l~~ 502 (638)
T PRK10636 423 KVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDFEGALVVVSHDRHLLRSTTDDLYLVHD 502 (638)
T ss_pred HhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 67899999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred CeEeeccCChHHHHH
Q 008750 332 GVSRTYEGNYSQYVL 346 (555)
Q Consensus 332 G~~~~~~G~y~~~~~ 346 (555)
|++..|.|+|++|..
T Consensus 503 G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 503 GKVEPFDGDLEDYQQ 517 (638)
T ss_pred CEEEEcCCCHHHHHH
Confidence 998889999999954
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=359.14 Aligned_cols=216 Identities=21% Similarity=0.295 Sum_probs=174.5
Q ss_pred ccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC----CCceEEEEcCCCc------
Q 008750 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE----PDSGNVIKAKSNM------ 161 (555)
Q Consensus 96 ~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~----p~~G~I~~~g~~~------ 161 (555)
++|+++||+++|+ ...+|+||||+|.+||++||||+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 3689999999993 3579999999999999999999999999999999999996 5899999988532
Q ss_pred --------eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 162 --------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 162 --------~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
.|+||+|++. +.+..||.+++........ ..... ...
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~------------~~~~~---------------------~~~ 128 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWT------------YKGRW---------------------WQR 128 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhh------------ccccc---------------------ccc
Confidence 5999999986 4567789888753210000 00000 000
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----C
Q 008750 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~ 305 (555)
..+...++.++|+.+||.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|++ .
T Consensus 129 ~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~ 208 (330)
T PRK15093 129 FGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN 208 (330)
T ss_pred HHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc
Confidence 0122456788999999974 346889999999999999999999999999999999999999999999888753 5
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|.||||||||++++.++||+|++|++|+++ ..|+..++.
T Consensus 209 g~tii~itHdl~~v~~~~dri~vm~~G~iv-e~g~~~~i~ 247 (330)
T PRK15093 209 NTTILLISHDLQMLSQWADKINVLYCGQTV-ETAPSKELV 247 (330)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCEEE-EECCHHHHH
Confidence 899999999999999999999999999974 566655543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=342.46 Aligned_cols=204 Identities=22% Similarity=0.334 Sum_probs=168.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
.++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 456999999999988889999999999999999999999999999999999999999999999743 2589
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.++. .|+.+|+..... +. .......++.++++
T Consensus 85 ~~~q~~~l~~-~tv~enl~~~~~---------------~~--------------------------~~~~~~~~~~~~l~ 122 (225)
T PRK10247 85 YCAQTPTLFG-DTVYDNLIFPWQ---------------IR--------------------------NQQPDPAIFLDDLE 122 (225)
T ss_pred EEeccccccc-ccHHHHHHhHHh---------------hc--------------------------CCChHHHHHHHHHH
Confidence 9999988754 599998753110 00 00011234667888
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+.....++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++.
T Consensus 123 ~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~ 202 (225)
T PRK10247 123 RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202 (225)
T ss_pred HcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH
Confidence 899864456889999999999999999999999999999999999999999999887753 4889999999999996
Q ss_pred hhcceeEEecCCeEeeccCCh
Q 008750 321 QLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y 341 (555)
.||+|++|++..-.+.+|+|
T Consensus 203 -~~d~i~~l~~~~~~~~~~~~ 222 (225)
T PRK10247 203 -HADKVITLQPHAGEMQEARY 222 (225)
T ss_pred -hCCEEEEEecccchHhhhhh
Confidence 69999999622222345554
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=351.07 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=176.2
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.+|+++||+++|+ +..+|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 2 ~~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 2 HLIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred ceEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 3589999999996 45799999999999999999999999999999999999999999999988532 489
Q ss_pred EEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++. .++..||.+|+...... ..........++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 122 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPIN---------------------------------------LGLDEETVAHRVSSAL 122 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 9999974 33567999987432100 0011112234577889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l 319 (555)
+.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++
T Consensus 123 ~~~~l~-~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~ 201 (277)
T PRK13652 123 HMLGLE-ELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLV 201 (277)
T ss_pred HHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 999996 567889999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.++||||++|++|++ .+.|..+++..
T Consensus 202 ~~~~drv~~l~~G~i-~~~g~~~~~~~ 227 (277)
T PRK13652 202 PEMADYIYVMDKGRI-VAYGTVEEIFL 227 (277)
T ss_pred HHhCCEEEEEECCeE-EEECCHHHHhc
Confidence 999999999999987 46687776643
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=347.33 Aligned_cols=211 Identities=28% Similarity=0.400 Sum_probs=176.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEe
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLS 167 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~ 167 (555)
|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 2 l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~ 81 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVE 81 (256)
T ss_pred ceEEeEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEec
Confidence 6899999999988999999999999999999999999999999999999999999999988432 489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..||.+|+......... . ..........++.++++.+|
T Consensus 82 q~~~~~~~~tv~e~l~~~~~~~~~-----------~------------------------~~~~~~~~~~~~~~~l~~~~ 126 (256)
T TIGR03873 82 QDSDTAVPLTVRDVVALGRIPHRS-----------L------------------------WAGDSPHDAAVVDRALARTE 126 (256)
T ss_pred ccCccCCCCCHHHHHHhcchhhhh-----------h------------------------ccCCCHHHHHHHHHHHHHcC
Confidence 998777888999998542100000 0 00001112345777888899
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||++|||++++..+||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d 205 (256)
T TIGR03873 127 LS-HLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCD 205 (256)
T ss_pred cH-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 567889999999999999999999999999999999999999999999888753 47899999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|..+++.
T Consensus 206 ~i~~l~~G~i~-~~g~~~~~~ 225 (256)
T TIGR03873 206 HVVVLDGGRVV-AAGPPREVL 225 (256)
T ss_pred EEEEEeCCCEE-EecCHHHhh
Confidence 99999999874 567665543
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-42 Score=346.20 Aligned_cols=210 Identities=21% Similarity=0.295 Sum_probs=171.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
+++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 5 EAIIETENLNLFYTDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred CceEEEeeeEEEeCCceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 3469999999999888899999999999999999999999999999999999987 48999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..|+|++|++.++ ..||.+|+....... . .........
T Consensus 85 ~~~~~i~~v~q~~~~~-~~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~ 125 (254)
T PRK14273 85 ELRRKIGMVFQTPNPF-LMSIYDNISYGPKIH---------------G-----------------------TKDKKKLDE 125 (254)
T ss_pred HHhhceEEEeeccccc-cCcHHHHHHHHHHhc---------------C-----------------------CCCHHHHHH
Confidence 2499999998775 589999985421100 0 000011234
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+. ....++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 126 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~ 205 (254)
T PRK14273 126 IVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIV 205 (254)
T ss_pred HHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 455666666652 1345778999999999999999999999999999999999999999999888754 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. ..|...++
T Consensus 206 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 236 (254)
T PRK14273 206 THNMQQAGRISDRTAFFLNGCIE-EESSTDEL 236 (254)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999999974 45665554
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=345.86 Aligned_cols=211 Identities=25% Similarity=0.404 Sum_probs=173.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------- 160 (555)
++|+++||++.|++..+|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46999999999988889999999999999999999999999999999999999999999998754
Q ss_pred ----ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 ----MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 ----~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..++|++|++. +.+..|+.+|+...... .. ......
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~--------------~~------------------------~~~~~~ 123 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMA--------------IG------------------------ARHYGN 123 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHH--------------hc------------------------ccchHH
Confidence 13899999974 33455777776421100 00 000001
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMV 310 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvI 310 (555)
....+.++++.+|+.....++.+..|||||||||+|||||+.+|++|||||||++||+.+++++.++|.+ .+.|+|
T Consensus 124 ~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii 203 (253)
T TIGR02323 124 IRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVI 203 (253)
T ss_pred HHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 2345677889999864567889999999999999999999999999999999999999999999887743 489999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++++..+||++++|++|++. ..|...++.
T Consensus 204 ~vsH~~~~~~~~~d~~~~l~~G~i~-~~~~~~~~~ 237 (253)
T TIGR02323 204 IVTHDLGVARLLAQRLLVMQQGRVV-ESGLTDQVL 237 (253)
T ss_pred EEeCCHHHHHHhcCEEEEEECCEEE-EECCHHHHh
Confidence 9999999999999999999999974 456655543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=381.83 Aligned_cols=212 Identities=35% Similarity=0.553 Sum_probs=182.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc-cC
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE-VS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~-~~ 173 (555)
.++|+++||+++|+++++|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|.++ .+..|||++|++. ++
T Consensus 320 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~-~~~~i~~v~q~~~~~~ 398 (552)
T TIGR03719 320 DKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIG-ETVKLAYVDQSRDALD 398 (552)
T ss_pred CeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEEC-CceEEEEEeCCccccC
Confidence 467999999999988889999999999999999999999999999999999999999999995 4567999999964 66
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+|+...... ......+..+..+++.+|+.....
T Consensus 399 ~~~tv~e~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l~~~~~ 437 (552)
T TIGR03719 399 PNKTVWEEISGGLDI-----------------------------------------IQLGKREVPSRAYVGRFNFKGSDQ 437 (552)
T ss_pred CCCcHHHHHHhhccc-----------------------------------------cccCcchHHHHHHHHhCCCChhHh
Confidence 778999998542100 000001123456788899864456
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC-C
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM-G 332 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~-G 332 (555)
++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++.+.|||+||||++++..+||+|++|++ |
T Consensus 438 ~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~viivsHd~~~~~~~~d~i~~l~~~~ 517 (552)
T TIGR03719 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFAGCAVVISHDRWFLDRIATHILAFEGDS 517 (552)
T ss_pred cCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHhCCEEEEEECCC
Confidence 889999999999999999999999999999999999999999999999988767999999999999999999999986 5
Q ss_pred eEeeccCChHHHHHHH
Q 008750 333 VSRTYEGNYSQYVLEK 348 (555)
Q Consensus 333 ~~~~~~G~y~~~~~~~ 348 (555)
++..|.|+|++|...+
T Consensus 518 ~~~~~~g~~~~~~~~~ 533 (552)
T TIGR03719 518 HVEWFEGNYSEYEEDK 533 (552)
T ss_pred eEEEeCCCHHHHHHHH
Confidence 8878999999886654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=345.30 Aligned_cols=210 Identities=21% Similarity=0.327 Sum_probs=173.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~---------- 161 (555)
.|+++||+++|+++++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 4 ~l~i~~v~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~ 83 (258)
T PRK14241 4 RIDVKDLNIYYGSFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAV 83 (258)
T ss_pred cEEEeeEEEEECCEeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHH
Confidence 58999999999888899999999999999999999999999999999999974 799999987432
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++|++|++.+++..||.+|+...... .. .......++++
T Consensus 84 ~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~~~ 125 (258)
T PRK14241 84 RRTIGMVFQRPNPFPTMSIRDNVVAGLKL---------------NG-----------------------VRNKKDLDELV 125 (258)
T ss_pred hcceEEEccccccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 499999999887888999998532100 00 00011223456
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+|||
T Consensus 126 ~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH 205 (258)
T PRK14241 126 EKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTH 205 (258)
T ss_pred HHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 6777788874 2356788999999999999999999999999999999999999999999988753 3689999999
Q ss_pred CHHHHHhhcceeEEec------CCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETE------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~------~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|+ +|++ .+.|+..++.
T Consensus 206 ~~~~~~~~~d~i~~l~~~~~~~~g~i-~~~~~~~~~~ 241 (258)
T PRK14241 206 NMQQAARVSDQTAFFNLEATGKPGRL-VEIDDTEKIF 241 (258)
T ss_pred CHHHHHHhCCEEEEEecccCCCCceE-EecCCHHHHH
Confidence 9999999999999996 7876 4557766553
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=346.05 Aligned_cols=211 Identities=21% Similarity=0.291 Sum_probs=172.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~-------- 161 (555)
.+.|+++|++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 11 ~~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~ 90 (260)
T PRK10744 11 PSKIQVRNLNFYYGKFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIA 90 (260)
T ss_pred CceEEEEEEEEEeCCeEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchH
Confidence 456999999999988889999999999999999999999999999999999986 5899999987432
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.|+|++|++.+++ .|+.+|+...... .. .........
T Consensus 91 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~ 131 (260)
T PRK10744 91 LLRAKVGMVFQKPTPFP-MSIYDNIAFGVRL---------------FE-----------------------KLSRAEMDE 131 (260)
T ss_pred HHhcceEEEecCCccCc-CcHHHHHhhhHhh---------------cC-----------------------CCCHHHHHH
Confidence 4999999987755 8999997532100 00 001112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+|
T Consensus 132 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~ 211 (260)
T PRK10744 132 RVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIV 211 (260)
T ss_pred HHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 5667777777642 345788899999999999999999999999999999999999999999988754 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||+|++|++|++. ..|..+++.
T Consensus 212 sH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 243 (260)
T PRK10744 212 THNMQQAARCSDYTAFMYLGELI-EFGNTDTIF 243 (260)
T ss_pred eCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 99999999999999999999974 456655543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=341.24 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=174.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++.. .||||+|.+|+++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 ~l~~~~l~~~~~~~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q 78 (232)
T PRK10771 1 MLKLTDITWLYHHLP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPSRRPVSMLFQ 78 (232)
T ss_pred CeEEEEEEEEECCcc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChhhccEEEEec
Confidence 478999999997644 39999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+........ ......+.++.++++.+|+
T Consensus 79 ~~~~~~~~tv~e~l~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l 119 (232)
T PRK10771 79 ENNLFSHLTVAQNIGLGLNPGL---------------------------------------KLNAAQREKLHAIARQMGI 119 (232)
T ss_pred ccccccCCcHHHHHhccccccc---------------------------------------CCCHHHHHHHHHHHHHcCc
Confidence 9988778899999853210000 0001123457778889999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++..+||
T Consensus 120 ~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d 198 (232)
T PRK10771 120 E-DLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAP 198 (232)
T ss_pred H-HHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999988887743 48899999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|++|++|++. +.|+++++..
T Consensus 199 ~i~~l~~g~i~-~~g~~~~~~~ 219 (232)
T PRK10771 199 RSLVVADGRIA-WDGPTDELLS 219 (232)
T ss_pred EEEEEECCEEE-EeCCHHHHHh
Confidence 99999999874 6788776653
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=348.16 Aligned_cols=244 Identities=22% Similarity=0.382 Sum_probs=205.1
Q ss_pred hhHHHHhccCcchhhhhhcccccCCCC---CCCCCccEEEEeEEEEeC---C--------ceeeeeeeEEEECCCEEEEE
Q 008750 64 SDVESLFSSSADEFENKKYSNKQSNTG---ASSISSGVKLENISKSYK---G--------VTVLKDVTWEVKKGEKVGLV 129 (555)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~l~nls~~y~---~--------~~vL~~vsl~i~~Ge~~~lv 129 (555)
+..+++|..|+++|++....+.|.-.. +...++.++.+||.+.|+ + ..++++|||++++||.+|||
T Consensus 240 ~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlV 319 (534)
T COG4172 240 GTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV 319 (534)
T ss_pred CcHHHHhhCCCChHHHHHHhcCCCCCCCCCCCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEE
Confidence 568899999999999999888764332 224567899999999994 2 24899999999999999999
Q ss_pred cCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHH
Q 008750 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
|+||||||||-++|.+++++. |+|.|+|.++ ++-.|||||+ +.+.+||.+.+..++. ++
T Consensus 320 GESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~----vh- 393 (534)
T COG4172 320 GESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR----VH- 393 (534)
T ss_pred ecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh----hc-
Confidence 999999999999999999876 9999998653 5889999985 6678899887754421 00
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
+ ......+.++++.++|.++|+++...+|+|+++|||||||++|||||
T Consensus 394 ---------~-----------------------~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSGGQRQRIAIARAl 441 (534)
T COG4172 394 ---------E-----------------------PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARAL 441 (534)
T ss_pred ---------C-----------------------CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCcchhhHHHHHHHH
Confidence 0 02344566788999999999999999999999999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+.+|++++||||||+||......+.++|+ +++.+.+|||||+..+..+||+|+||++|+++ ..|+-++.+.
T Consensus 442 iLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiV-E~G~~~~if~ 516 (534)
T COG4172 442 ILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIV-EQGPTEAVFA 516 (534)
T ss_pred hcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEe-eeCCHHHHhc
Confidence 99999999999999999988887777764 57999999999999999999999999999975 4566555443
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-42 Score=348.76 Aligned_cols=207 Identities=26% Similarity=0.390 Sum_probs=173.2
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
+|+++||+++|+ ++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++
T Consensus 1 ml~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80 (274)
T ss_pred CEEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheE
Confidence 478999999995 56799999999999999999999999999999999999999999999987432 489
Q ss_pred EEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|++|++.. ++..|+.+|+...... .........+++.+++
T Consensus 81 ~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l 121 (274)
T PRK13644 81 IVFQNPETQFVGRTVEEDLAFGPEN---------------------------------------LCLPPIEIRKRVDRAL 121 (274)
T ss_pred EEEEChhhhcccchHHHHHHhhHHH---------------------------------------cCCCHHHHHHHHHHHH
Confidence 99999763 4668999987532100 0011122345677788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ...++++..|||||+|||+|||||+.+|+||||||||++||+.++..+.+.|+ +.|.|||++|||++++.
T Consensus 122 ~~~gl~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~ 200 (274)
T PRK13644 122 AEIGLE-KYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELH 200 (274)
T ss_pred HHCCCH-HHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHh
Confidence 899986 45788999999999999999999999999999999999999999999988874 35899999999999995
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+..++.
T Consensus 201 -~~d~v~~l~~G~i~-~~g~~~~~~ 223 (274)
T PRK13644 201 -DADRIIVMDRGKIV-LEGEPENVL 223 (274)
T ss_pred -hCCEEEEEECCEEE-EECCHHHHh
Confidence 69999999999974 567766554
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=348.77 Aligned_cols=208 Identities=24% Similarity=0.371 Sum_probs=174.4
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eE
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~i 163 (555)
+|+++||+++|+ +.++|+||||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i 80 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTV 80 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhhe
Confidence 478999999996 46799999999999999999999999999999999999999999999988432 48
Q ss_pred EEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|++|++. .++..||.+|+...... . .........++.++
T Consensus 81 ~~v~q~~~~~~~~~tv~e~i~~~~~~----------------~-----------------------~~~~~~~~~~~~~~ 121 (275)
T PRK13639 81 GIVFQNPDDQLFAPTVEEDVAFGPLN----------------L-----------------------GLSKEEVEKRVKEA 121 (275)
T ss_pred EEEeeChhhhhccccHHHHHHHHHHH----------------c-----------------------CCCHHHHHHHHHHH
Confidence 99999974 33567999987532100 0 00111223457778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||||++++
T Consensus 122 l~~~~L~-~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~ 200 (275)
T PRK13639 122 LKAVGME-GFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLV 200 (275)
T ss_pred HHHCCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHH
Confidence 8999996 467899999999999999999999999999999999999999999999888753 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||+|++|++|++. ..|+.+++.
T Consensus 201 ~~~~d~i~~l~~G~i~-~~g~~~~~~ 225 (275)
T PRK13639 201 PVYADKVYVMSDGKII-KEGTPKEVF 225 (275)
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 467776654
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=337.22 Aligned_cols=194 Identities=23% Similarity=0.312 Sum_probs=167.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEEEEe
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLS 167 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig~v~ 167 (555)
+++|+++|++++|+++++|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 9 ~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~~~ 88 (214)
T PRK13543 9 PPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAYLG 88 (214)
T ss_pred cceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEEee
Confidence 4579999999999888899999999999999999999999999999999999999999999998542 489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..|+.+|+..... + .....+..+.+++..+|
T Consensus 89 q~~~~~~~~t~~e~l~~~~~---------------~---------------------------~~~~~~~~~~~~l~~~~ 126 (214)
T PRK13543 89 HLPGLKADLSTLENLHFLCG---------------L---------------------------HGRRAKQMPGSALAIVG 126 (214)
T ss_pred cCcccccCCcHHHHHHHHHH---------------h---------------------------cCCcHHHHHHHHHHHcC
Confidence 99888777899998743210 0 00112334567788889
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+||||||||++|||+|+.+|++|||||||++||+.+++++.++|.+ .+.|+|++|||++++.++||
T Consensus 127 l~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~ 205 (214)
T PRK13543 127 LA-GYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRT 205 (214)
T ss_pred Ch-hhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcc
Confidence 86 456888999999999999999999999999999999999999999999988753 48999999999999999999
Q ss_pred eeEEecC
Q 008750 325 KIVETEM 331 (555)
Q Consensus 325 ri~~l~~ 331 (555)
++++++.
T Consensus 206 ~i~~l~~ 212 (214)
T PRK13543 206 RMLTLEA 212 (214)
T ss_pred eEEEEee
Confidence 9999863
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=346.70 Aligned_cols=211 Identities=20% Similarity=0.281 Sum_probs=170.7
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~-------- 160 (555)
..++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 18 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 18 KEHILEVKDLSIYYGEKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred CCceEEEEEEEEEeCCceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 4467999999999988889999999999999999999999999999999999864 799999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++ .|+.+|+...+.. .. . ......+
T Consensus 98 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~--~---------------------~~~~~~~ 138 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFP-KSIYNNITHALKY---------------AG--E---------------------RRKSVLD 138 (268)
T ss_pred HHHhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC--C---------------------CcHHHHH
Confidence 25899999987765 5999998542110 00 0 0000112
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
..+.++++.+++.. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+
T Consensus 139 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 218 (268)
T PRK14248 139 EIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIII 218 (268)
T ss_pred HHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEE
Confidence 33455566666631 345788999999999999999999999999999999999999999999988764 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+|||++++..+||+|++|++|++. +.|..+++
T Consensus 219 ~tH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 250 (268)
T PRK14248 219 VTHNMQQALRVSDRTAFFLNGDLV-EYDQTEQI 250 (268)
T ss_pred EEeCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999874 45666554
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-42 Score=343.40 Aligned_cols=210 Identities=20% Similarity=0.331 Sum_probs=172.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~~--------- 161 (555)
..|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 3 ~~l~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 82 (252)
T PRK14256 3 NKVKLEQLNVHFGKNHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82 (252)
T ss_pred cEEEEEEEEEEeCCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHH
Confidence 45899999999988889999999999999999999999999999999999986 4 689999987432
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++.+++..|+.+|+...+.. .. .........+
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 124 (252)
T PRK14256 83 IRRRVGMVFQKPNPFPAMSIYDNVIAGYKL---------------NG-----------------------RVNRSEADEI 124 (252)
T ss_pred hhccEEEEecCCCCCCcCcHHHHHHhHHHh---------------cC-----------------------CCCHHHHHHH
Confidence 499999999887788999998532110 00 0001112345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivs 204 (252)
T PRK14256 125 VESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVT 204 (252)
T ss_pred HHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEE
Confidence 666777788743 245678899999999999999999999999999999999999999999888754 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. ..|..+++
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 234 (252)
T PRK14256 205 HNMQQAARVSDYTAFFYMGDLV-ECGETKKI 234 (252)
T ss_pred CCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999874 45665554
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=338.30 Aligned_cols=199 Identities=31% Similarity=0.458 Sum_probs=171.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------ceEEEEecccc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------MKIAFLSQEFE 171 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------~~ig~v~Q~~~ 171 (555)
|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~~ 80 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESPP 80 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCCC
Confidence 478999999988889999999999999999999999999999999999999999999998753 25899999998
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+++..|+.+|+..... . .. ..+.++.++++.+|+. .
T Consensus 81 ~~~~~t~~~~~~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~-~ 116 (223)
T TIGR03740 81 LYENLTARENLKVHTT---------------L--------------------------LG--LPDSRIDEVLNIVDLT-N 116 (223)
T ss_pred ccccCCHHHHHHHHHH---------------H--------------------------cC--CCHHHHHHHHHHcCCc-H
Confidence 8778899998743210 0 00 0123566778889986 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||++|||++++..+||+|++
T Consensus 117 ~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~ 196 (223)
T TIGR03740 117 TGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGI 196 (223)
T ss_pred HHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEE
Confidence 56888999999999999999999999999999999999999999999988753 478999999999999999999999
Q ss_pred ecCCeEeeccCCh
Q 008750 329 TEMGVSRTYEGNY 341 (555)
Q Consensus 329 l~~G~~~~~~G~y 341 (555)
|++|++. ..|+.
T Consensus 197 l~~g~i~-~~~~~ 208 (223)
T TIGR03740 197 ISEGVLG-YQGKI 208 (223)
T ss_pred EeCCEEE-EecCh
Confidence 9999874 34543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-42 Score=345.27 Aligned_cols=212 Identities=18% Similarity=0.279 Sum_probs=173.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~-------- 160 (555)
..+.|+++||++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 16 ~~~~l~~~nl~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 16 TEIKMRARDVSVFYGEKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CCceEEEEeEEEEECCEEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 34579999999999988899999999999999999999999999999999999975 89999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.+++ .|+.+|+...... ... ........
T Consensus 96 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~----------------------~~~~~~~~ 137 (267)
T PRK14235 96 VELRARVGMVFQKPNPFP-KSIYENVAYGPRI---------------HGL----------------------ARSKAELD 137 (267)
T ss_pred HHHhhceEEEecCCCCCC-CcHHHHHHHHHHh---------------ccc----------------------ccchHHHH
Confidence 24899999988765 5999998532100 000 00011223
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 138 ~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiii 217 (267)
T PRK14235 138 EIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVI 217 (267)
T ss_pred HHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 45677788888853 245778899999999999999999999999999999999999999999998853 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++++..+||+|++|++|++. ..|..+++
T Consensus 218 vtH~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 249 (267)
T PRK14235 218 VTHSMQQAARVSQRTAFFHLGNLV-EVGDTEKM 249 (267)
T ss_pred EEcCHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999874 45665554
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=349.38 Aligned_cols=208 Identities=23% Similarity=0.370 Sum_probs=175.7
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
++|+++||++.|++ +++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 4 ~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 4 EIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred ceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 46999999999974 5699999999999999999999999999999999999999999999998532 58
Q ss_pred EEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|++|++. .++..||.+|+...... . .....+...++.++
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~ 124 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLEN---------------I------------------------GVPREEMVERVDQA 124 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhh---------------C------------------------CCCHHHHHHHHHHH
Confidence 99999974 56678999998532100 0 00112234567888
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+||. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||+++
T Consensus 125 l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~ 203 (279)
T PRK13635 125 LRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203 (279)
T ss_pred HHHcCCh-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHH
Confidence 8999996 567889999999999999999999999999999999999999999999988753 38999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+. .||+|++|++|++ .+.|+..++.
T Consensus 204 ~~-~~d~i~~l~~G~i-~~~g~~~~~~ 228 (279)
T PRK13635 204 AA-QADRVIVMNKGEI-LEEGTPEEIF 228 (279)
T ss_pred HH-cCCEEEEEECCEE-EEECCHHHHh
Confidence 97 5999999999987 4667766554
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=339.39 Aligned_cols=206 Identities=27% Similarity=0.429 Sum_probs=175.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|.++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (232)
T cd03300 1 IELENVSKFYGGFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPHKRPVNTVFQN 80 (232)
T ss_pred CEEEeEEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcceEEEecc
Confidence 478999999988889999999999999999999999999999999999999999999998753 359999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.++...|+.+|+...+.. . .......+.++..+++.+|+.
T Consensus 81 ~~~~~~~t~~~nl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (232)
T cd03300 81 YALFPHLTVFENIAFGLRL---------------K------------------------KLPKAEIKERVAEALDLVQLE 121 (232)
T ss_pred cccCCCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCc
Confidence 9887788999987532110 0 001112244567788889996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||++|||++++..+||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~ 200 (232)
T cd03300 122 -GYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDR 200 (232)
T ss_pred -hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCE
Confidence 567888999999999999999999999999999999999999999999988753 389999999999999999999
Q ss_pred eEEecCCeEeeccCChHHH
Q 008750 326 IVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~ 344 (555)
|++|++|++. +.|...++
T Consensus 201 i~~l~~G~~~-~~~~~~~~ 218 (232)
T cd03300 201 IAVMNKGKIQ-QIGTPEEI 218 (232)
T ss_pred EEEEECCEEE-ecCCHHHH
Confidence 9999999975 45555443
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=311.78 Aligned_cols=198 Identities=27% Similarity=0.438 Sum_probs=172.1
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------ 160 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------ 160 (555)
.|+++++++..+. ..+|++|+|.|++||.+||||++|||||||+-+++|+..|++|+|.+.|.+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5899999998853 469999999999999999999999999999999999999999999998864
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.+||+|||.+.+.+++|..||++.+.. +.+ -...+....
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPle---------------L~g------------------------e~~~~~~~~ 126 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLE---------------LRG------------------------ESSADSRAG 126 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhh---------------hcC------------------------CccccHHHH
Confidence 269999999999999999999875431 000 012234456
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSH 314 (555)
+.++|..+|+. ..++.+|.+|||||+|||+|||||+..|+||+.||||-+||.++-+.+.++| ++.|.|+|+|||
T Consensus 127 A~~lL~~vGLg-~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTH 205 (228)
T COG4181 127 AKALLEAVGLG-KRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTH 205 (228)
T ss_pred HHHHHHHhCcc-cccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeC
Confidence 78889999996 4668899999999999999999999999999999999999999887777765 567999999999
Q ss_pred CHHHHHhhcceeEEecCCeEe
Q 008750 315 DRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~ 335 (555)
|+.++.+ |+|++.|..|+++
T Consensus 206 D~~LA~R-c~R~~r~~~G~l~ 225 (228)
T COG4181 206 DPQLAAR-CDRQLRLRSGRLV 225 (228)
T ss_pred CHHHHHh-hhheeeeecceec
Confidence 9999976 9999999999874
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-42 Score=341.49 Aligned_cols=210 Identities=19% Similarity=0.281 Sum_probs=172.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC---CCC--CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ---EEP--DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~---~~p--~~G~I~~~g~~~--------- 161 (555)
++|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+ ++| ++|+|.++|.+.
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred cEEEEEEEEEEECCEeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 568999999999888899999999999999999999999999999999997 455 589999987432
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++.++. .|+.+|+...+.. .. . ......+..
T Consensus 82 ~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~---------------~~-~----------------------~~~~~~~~~ 122 (250)
T PRK14245 82 LRKNVGMVFQRPNPFP-KSIFENVAYGLRV---------------NG-V----------------------KDNAFIRQR 122 (250)
T ss_pred HhhheEEEecCCccCc-ccHHHHHHHHHHH---------------cC-C----------------------CcHHHHHHH
Confidence 4999999987765 6999988532100 00 0 000112345
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivt 202 (250)
T PRK14245 123 VEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 667788888753 245788999999999999999999999999999999999999999999998854 478999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++ .+.|...++.
T Consensus 203 H~~~~~~~~~d~v~~l~~G~~-~~~~~~~~~~ 233 (250)
T PRK14245 203 HNMQQAARVSDKTAFFYMGEM-VEYDDTKKIF 233 (250)
T ss_pred CCHHHHHhhCCEEEEEECCEE-EEECCHHHHh
Confidence 999999999999999999987 4567766554
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=340.88 Aligned_cols=209 Identities=22% Similarity=0.382 Sum_probs=174.1
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-C----CceEEEEcCCC--------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-P----DSGNVIKAKSN-------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p----~~G~I~~~g~~-------- 160 (555)
++++||+..|.. ..+++||||+|++||++||||+|||||||+.+.|+|+++ | .+|+|.++|.+
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 789999999943 469999999999999999999999999999999999997 4 57999999863
Q ss_pred ------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhc-C
Q 008750 161 ------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAV-N 231 (555)
Q Consensus 161 ------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 231 (555)
..|+|+||++. +.+.+||.+-+...+... ... .
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h--------------------------------------~~~~~ 123 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH--------------------------------------GKGLS 123 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh--------------------------------------hcchh
Confidence 26999999984 456667766554322100 000 1
Q ss_pred cccHHHHHHHHhhhcCCCcc--ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CC
Q 008750 232 LDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~ 305 (555)
..+..+++.++|+.+||+.. ..+.+|++|||||||||.||.||+.+|++||.||||++||+.....+.++|+ +.
T Consensus 124 ~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~ 203 (316)
T COG0444 124 KKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREK 203 (316)
T ss_pred hHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhc
Confidence 23456788999999999854 6799999999999999999999999999999999999999999888888764 47
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|.|+|+||||+..+.++||||+||..|+++. .|+..++.
T Consensus 204 ~~aiilITHDl~vva~~aDri~VMYaG~iVE-~g~~~~i~ 242 (316)
T COG0444 204 GTALILITHDLGVVAEIADRVAVMYAGRIVE-EGPVEEIF 242 (316)
T ss_pred CCEEEEEeCCHHHHHHhcceEEEEECcEEEE-eCCHHHHh
Confidence 9999999999999999999999999999865 45554443
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-42 Score=341.96 Aligned_cols=200 Identities=27% Similarity=0.377 Sum_probs=167.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+++.
T Consensus 3 ~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~~-~~i~~v~q~~~~~~~ 81 (251)
T PRK09544 3 SLVSLENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGK-LRIGYVPQKLYLDTT 81 (251)
T ss_pred cEEEEeceEEEECCceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCc-cCEEEeccccccccc
Confidence 4699999999998888999999999999999999999999999999999999999999999863 469999999876544
Q ss_pred --ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 176 --RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 176 --~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
.|+.+++... ......++..+++.+|+. ...
T Consensus 82 l~~~~~~~~~~~----------------------------------------------~~~~~~~~~~~l~~~gl~-~~~ 114 (251)
T PRK09544 82 LPLTVNRFLRLR----------------------------------------------PGTKKEDILPALKRVQAG-HLI 114 (251)
T ss_pred cChhHHHHHhcc----------------------------------------------ccccHHHHHHHHHHcCCh-HHH
Confidence 3555443110 000123456678888885 456
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||+||||++++..+||+|++|
T Consensus 115 ~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l 194 (251)
T PRK09544 115 DAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCL 194 (251)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEE
Confidence 788999999999999999999999999999999999999999999888743 3899999999999999999999999
Q ss_pred cCCeEeeccCChHHHH
Q 008750 330 EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 330 ~~G~~~~~~G~y~~~~ 345 (555)
++ ++ ...|+.+++.
T Consensus 195 ~~-~i-~~~g~~~~~~ 208 (251)
T PRK09544 195 NH-HI-CCSGTPEVVS 208 (251)
T ss_pred CC-ce-EeeCCHHHHh
Confidence 75 44 4667766543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-42 Score=340.54 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=172.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCCc----------eE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~~----------~i 163 (555)
+|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+. .+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i 81 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNV 81 (246)
T ss_pred ceeeeeeEEEECCEeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhE
Confidence 4899999999998889999999999999999999999999999999999974 7999999988542 48
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++ .|+.+|+..... ..... ........++.+++
T Consensus 82 ~~~~q~~~l~~-~tv~eni~~~~~---------------~~~~~----------------------~~~~~~~~~~~~~l 123 (246)
T PRK14269 82 GMVFQQPNVFV-KSIYENISYAPK---------------LHGMI----------------------KNKDEEEALVVDCL 123 (246)
T ss_pred EEEecCCcccc-ccHHHHhhhHHh---------------hcCcc----------------------cChHHHHHHHHHHH
Confidence 99999988765 699999753210 00000 00012234566778
Q ss_pred hhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHH
Q 008750 244 PELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAF 318 (555)
Q Consensus 244 ~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~ 318 (555)
+.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|+|+||||+++
T Consensus 124 ~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~ 203 (246)
T PRK14269 124 QKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQ 203 (246)
T ss_pred HHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 8888852 345778899999999999999999999999999999999999999999988854 48899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+..+||+|++|++|++. ..|...++
T Consensus 204 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 228 (246)
T PRK14269 204 GKRVADYTAFFHLGELI-EFGESKEF 228 (246)
T ss_pred HHhhCcEEEEEECCEEE-EECCHHHH
Confidence 99999999999999975 44655544
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-42 Score=358.22 Aligned_cols=198 Identities=26% Similarity=0.416 Sum_probs=170.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ce
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ 162 (555)
+|++ ||+++|+++. + |+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..
T Consensus 1 ~l~~-~l~k~~~~~~-~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 1 MLEL-NFKQQLGDLC-L-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred CeEE-EEEEEeCCEE-E-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 4778 9999998754 3 8999999999999999999999999999999999999999998742 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++|++|++.+++.+||.+|+...... ....++.++
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~---------------------------------------------~~~~~~~~~ 112 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAK---------------------------------------------SMVAQFDKI 112 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhh---------------------------------------------hhHHHHHHH
Confidence 89999999998899999998532100 012346778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||+++
T Consensus 113 l~~~gl~-~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~ 191 (352)
T PRK11144 113 VALLGIE-PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDE 191 (352)
T ss_pred HHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHH
Confidence 8889996 467899999999999999999999999999999999999999999988887753 48999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+..+||+|++|++|++. ..|+..++
T Consensus 192 ~~~~~d~i~~l~~G~i~-~~g~~~~i 216 (352)
T PRK11144 192 ILRLADRVVVLEQGKVK-AFGPLEEV 216 (352)
T ss_pred HHHhCCEEEEEeCCEEE-EecCHHHH
Confidence 99999999999999974 45655544
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-42 Score=377.10 Aligned_cols=208 Identities=31% Similarity=0.531 Sum_probs=182.1
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc--c
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE--V 172 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~--~ 172 (555)
.++|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++. ..+||++|++. +
T Consensus 317 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-~~i~~~~q~~~~~~ 395 (530)
T PRK15064 317 RNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-ANIGYYAQDHAYDF 395 (530)
T ss_pred CceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-eEEEEEcccccccC
Confidence 35799999999998888999999999999999999999999999999999999999999999864 57999999974 3
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
+...|+.+++.... .....+.++.++++.+|+....
T Consensus 396 ~~~~t~~~~~~~~~--------------------------------------------~~~~~~~~~~~~l~~~~l~~~~ 431 (530)
T PRK15064 396 ENDLTLFDWMSQWR--------------------------------------------QEGDDEQAVRGTLGRLLFSQDD 431 (530)
T ss_pred CCCCcHHHHHHHhc--------------------------------------------cCCccHHHHHHHHHHcCCChhH
Confidence 34679988763100 0001134567788999986456
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
.++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.+.|++.+.|||+||||++++..+||+|++|++|
T Consensus 432 ~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~tvi~vsHd~~~~~~~~d~i~~l~~g 511 (530)
T PRK15064 432 IKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKYEGTLIFVSHDREFVSSLATRIIEITPD 511 (530)
T ss_pred hcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 78999999999999999999999999999999999999999999999999888889999999999999999999999999
Q ss_pred eEeeccCChHHHHHH
Q 008750 333 VSRTYEGNYSQYVLE 347 (555)
Q Consensus 333 ~~~~~~G~y~~~~~~ 347 (555)
++..+.|++.++...
T Consensus 512 ~i~~~~g~~~~~~~~ 526 (530)
T PRK15064 512 GVVDFSGTYEEYLRS 526 (530)
T ss_pred eEEEcCCCHHHHHHH
Confidence 987789999887654
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=329.06 Aligned_cols=206 Identities=24% Similarity=0.470 Sum_probs=184.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------eEEEEeccc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------~ig~v~Q~~ 170 (555)
.+++++|+++||++.+++|+||++++|++.|++|+|||||||.+|+|.|+++|++|+|.|+|.+. +|||+|.+-
T Consensus 2 ~L~ie~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~~~~rIGyLPEER 81 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGYLPEER 81 (300)
T ss_pred ceEEecchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhhhhhhcccChhhh
Confidence 48999999999999999999999999999999999999999999999999999999999998653 699999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||.|.+... .....++..++..++..+|+.+++.
T Consensus 82 GLy~k~tv~dql~yl---------------------------------------a~LkGm~~~e~~~~~~~wLer~~i~- 121 (300)
T COG4152 82 GLYPKMTVEDQLKYL---------------------------------------AELKGMPKAEIQKKLQAWLERLEIV- 121 (300)
T ss_pred ccCccCcHHHHHHHH---------------------------------------HHhcCCcHHHHHHHHHHHHHhcccc-
Confidence 999999999876421 0112455667788899999999996
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHhhcceeE
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
....+++.+||-|.+|++.+..+++++|+++|||||+|||||.+.+.|.+.+ ++.|.|||++||.++-++.+||+++
T Consensus 122 ~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~ll 201 (300)
T COG4152 122 GKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLL 201 (300)
T ss_pred ccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhh
Confidence 4668889999999999999999999999999999999999999999998875 5689999999999999999999999
Q ss_pred EecCCeEeeccCChHH
Q 008750 328 ETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 328 ~l~~G~~~~~~G~y~~ 343 (555)
+|++|.. +..|+..+
T Consensus 202 mL~kG~~-V~~G~v~~ 216 (300)
T COG4152 202 MLKKGQT-VLYGTVED 216 (300)
T ss_pred eecCCce-EEeccHHH
Confidence 9999986 45676543
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=341.37 Aligned_cols=209 Identities=21% Similarity=0.305 Sum_probs=170.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~---------- 160 (555)
++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 3 NIISAKDVHLSYGNYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 46899999999988889999999999999999999999999999999999997 489999998743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.++ ..||.+|+...... .. . ...+..+.+
T Consensus 83 ~~~~i~~~~q~~~~~-~~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 123 (251)
T PRK14251 83 LRKEVGMVFQQPTPF-PFSVYDNVAYGLKI---------------AG-V----------------------KDKELIDQR 123 (251)
T ss_pred hhccEEEEecCCccC-CCcHHHHHHHHHHH---------------cC-C----------------------CCHHHHHHH
Confidence 2499999998775 47999998532110 00 0 000112234
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+. ....++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiis 203 (251)
T PRK14251 124 VEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVT 203 (251)
T ss_pred HHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 55667777773 1345788899999999999999999999999999999999999999999988864 378999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++.. .|..+++
T Consensus 204 H~~~~~~~~~d~i~~l~~G~i~~-~~~~~~~ 233 (251)
T PRK14251 204 HNLQQAGRISDQTAFLMNGDLIE-AGPTEEM 233 (251)
T ss_pred CCHHHHHhhcCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999754 4555443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=343.27 Aligned_cols=212 Identities=18% Similarity=0.273 Sum_probs=174.2
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------- 161 (555)
...+|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 17 ~~~~l~~~nl~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 17 EEIALSTKDLHVYYGKKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CCeEEEEeeEEEEECCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 3457999999999988899999999999999999999999999999999999996 5899999987432
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.|+|++|++.+++ .||.+|+..+... .. .......+
T Consensus 97 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~---------------~~-----------------------~~~~~~~~ 137 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFA-KSIYENITFALER---------------AG-----------------------VKDKKVLD 137 (267)
T ss_pred HHHhcceEEEecCCcccc-ccHHHHHHhHHHh---------------cC-----------------------CCCHHHHH
Confidence 4899999987755 6999998543110 00 00011223
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+
T Consensus 138 ~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 217 (267)
T PRK14237 138 EIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIII 217 (267)
T ss_pred HHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 45666777777742 346788999999999999999999999999999999999999999999888753 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++..+||+|++|++|++. ..|+..++.
T Consensus 218 ~tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 250 (267)
T PRK14237 218 VTHNMQQAARASDYTAFFYLGDLI-EYDKTRNIF 250 (267)
T ss_pred EecCHHHHHHhcCEEEEEECCEEE-EeCCHHHHh
Confidence 999999999999999999999975 556666553
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=323.97 Aligned_cols=210 Identities=24% Similarity=0.389 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
++++++||+..||..++|++|||++++||+++|+|+||+|||||||+|+|+.+|.+|+|.++|.++ .|+
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 569999999999999999999999999999999999999999999999999999999999999764 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||||.-.+|+.+||.||+..+....-.. ......++++.+
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~----------------------------------------~~~~~~~e~v~~ 121 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDK----------------------------------------EAQERDLEEVYE 121 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccc----------------------------------------ccccccHHHHHH
Confidence 9999999999999999997542110000 000000111111
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~ 320 (555)
.|---.+..++...+|||||||.++|||||+.+|++|||||||.+|-|...+.+.+.++ +.|.||++|.++..++.
T Consensus 122 lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al 201 (237)
T COG0410 122 LFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFAL 201 (237)
T ss_pred HChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHH
Confidence 11111245577889999999999999999999999999999999999999888887764 34789999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++||.++|++|++ ++.|+-++...
T Consensus 202 ~iaDr~yvle~Gri-v~~G~~~eL~~ 226 (237)
T COG0410 202 EIADRGYVLENGRI-VLSGTAAELLA 226 (237)
T ss_pred HhhCEEEEEeCCEE-EEecCHHHHhc
Confidence 99999999999996 67888766554
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=342.14 Aligned_cols=212 Identities=20% Similarity=0.279 Sum_probs=172.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~~------- 161 (555)
.+++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ | ++|+|.++|.+.
T Consensus 9 ~~~~l~i~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 9 KQEVYQINGMNLWYGQHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred CCceEEEeeEEEEECCeeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 3457999999999988889999999999999999999999999999999999987 3 699999987532
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.+++ .|+.+|+...... .. ........
T Consensus 89 ~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~ 129 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFP-QSIFDNVAYGPRI---------------HG-----------------------TKNKKKLQ 129 (259)
T ss_pred HHHhhceEEEecCCcccc-cCHHHHHHhHHHh---------------cC-----------------------CCCHHHHH
Confidence 4899999988765 4999987532100 00 00001123
Q ss_pred HHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+.. ...++++.+||||||||++|||+|+.+|++|||||||++||+.++..+.++|.+ .+.|+|+
T Consensus 130 ~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 209 (259)
T PRK14274 130 EIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVI 209 (259)
T ss_pred HHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 34566677777742 245788899999999999999999999999999999999999999999988754 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++.++||+|++|++|++. ..|+..++.
T Consensus 210 vtH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 242 (259)
T PRK14274 210 VTHNMQQAARVSDQTAFFYMGELV-ECNDTNKMF 242 (259)
T ss_pred EEcCHHHHHHhCCEEEEEECCEEE-EECCHHHHh
Confidence 999999999999999999999974 457766554
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=340.46 Aligned_cols=209 Identities=22% Similarity=0.284 Sum_probs=170.2
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CC---CceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EP---DSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p---~~G~I~~~g~~---------- 160 (555)
++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+. .| ++|+|.++|.+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred ceEEEEeeEEEECCeeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 4699999999998888999999999999999999999999999999999995 46 59999998743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.++. .|+.+|+...... .. . ........+
T Consensus 84 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 124 (252)
T PRK14239 84 LRKEIGMVFQQPNPFP-MSIYENVVYGLRL---------------KG-I----------------------KDKQVLDEA 124 (252)
T ss_pred hhhcEEEEecCCccCc-CcHHHHHHHHHHH---------------cC-C----------------------CcHHHHHHH
Confidence 25999999987755 8999998532100 00 0 000112334
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+..+++.+|+.. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 204 (252)
T PRK14239 125 VEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVT 204 (252)
T ss_pred HHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEE
Confidence 556677777632 245788899999999999999999999999999999999999999999988864 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. +.|...+.
T Consensus 205 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 234 (252)
T PRK14239 205 RSMQQASRISDRTGFFLDGDLI-EYNDTKQM 234 (252)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 9999999999999999999974 55665554
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-42 Score=337.71 Aligned_cols=206 Identities=30% Similarity=0.424 Sum_probs=174.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++|++++|++. +|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 l~~~~l~~~~~~~-~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~~~~~i~~~~q~ 79 (235)
T cd03299 1 LKVENLSKDWKEF-KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPEKRDISYVPQN 79 (235)
T ss_pred CeeEeEEEEeCCc-eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCChhHcCEEEEeec
Confidence 4789999999765 8999999999999999999999999999999999999999999998753 259999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . ..........+.++++.+|+.
T Consensus 80 ~~~~~~~t~~e~l~~~~~~----------------~-----------------------~~~~~~~~~~~~~~l~~~~l~ 120 (235)
T cd03299 80 YALFPHMTVYKNIAYGLKK----------------R-----------------------KVDKKEIERKVLEIAEMLGID 120 (235)
T ss_pred CccCCCccHHHHHHHHHHH----------------c-----------------------CCCHHHHHHHHHHHHHHcCCh
Confidence 8887788999997532100 0 001112334567788889996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|++||++.++..+||+
T Consensus 121 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~ 199 (235)
T cd03299 121 -HLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADK 199 (235)
T ss_pred -hHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCE
Confidence 567888999999999999999999999999999999999999999999998753 389999999999999999999
Q ss_pred eEEecCCeEeeccCChHHHH
Q 008750 326 IVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~ 345 (555)
|++|++|++. ..|+++++.
T Consensus 200 i~~l~~G~i~-~~~~~~~~~ 218 (235)
T cd03299 200 VAIMLNGKLI-QVGKPEEVF 218 (235)
T ss_pred EEEEECCEEE-EecCHHHHH
Confidence 9999999874 556666543
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=334.04 Aligned_cols=192 Identities=30% Similarity=0.452 Sum_probs=163.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~i 163 (555)
+.+ ||+|+|+++.+ |+||+|++ |+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 ~~~-~l~~~~~~~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 77 (214)
T cd03297 2 LCV-DIEKRLPDFTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKI 77 (214)
T ss_pred cee-eeeEecCCeee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcE
Confidence 345 99999988766 99999999 9999999999999999999999999999999998743 159
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..|+.+|+...... ......+.++.+++
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~-----------------------------------------~~~~~~~~~~~~~l 116 (214)
T cd03297 78 GLVFQQYALFPHLNVRENLAFGLKR-----------------------------------------KRNREDRISVDELL 116 (214)
T ss_pred EEEecCCccCCCCCHHHHHHHHHhh-----------------------------------------CCHHHHHHHHHHHH
Confidence 9999999887888999997532100 00001234567788
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l 319 (555)
+.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.+++ .|.|||+||||++++
T Consensus 117 ~~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~ 195 (214)
T cd03297 117 DLLGLD-HLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEA 195 (214)
T ss_pred HHcCCH-hHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHH
Confidence 888986 456888999999999999999999999999999999999999999999988753 388999999999999
Q ss_pred HhhcceeEEecCCeEe
Q 008750 320 DQLCTKIVETEMGVSR 335 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~ 335 (555)
..+||++++|++|++.
T Consensus 196 ~~~~d~i~~l~~G~i~ 211 (214)
T cd03297 196 EYLADRIVVMEDGRLQ 211 (214)
T ss_pred HHhcCEEEEEECCEEE
Confidence 9999999999999874
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=340.21 Aligned_cols=210 Identities=20% Similarity=0.321 Sum_probs=169.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~~---------- 161 (555)
+|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 83 (252)
T PRK14272 4 LLSAQDVNIYYGDKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAM 83 (252)
T ss_pred EEEEeeeEEEECCEEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHh
Confidence 589999999999888999999999999999999999999999999999999874 89999987432
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++|++|++.+++..|+.+|+....... . .. ......+.+
T Consensus 84 ~~~i~~~~q~~~~~~~~t~~enl~~~~~~~---------------~-~~----------------------~~~~~~~~~ 125 (252)
T PRK14272 84 RRRVGMVFQKPNPFPTMSVFDNVVAGLKLA---------------G-IR----------------------DRDHLMEVA 125 (252)
T ss_pred hceeEEEeccCccCcCCCHHHHHHHHHHhc---------------C-CC----------------------CHHHHHHHH
Confidence 5999999998877789999985422100 0 00 000112223
Q ss_pred HHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.+++..+++. ....++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||++||
T Consensus 126 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 205 (252)
T PRK14272 126 ERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTH 205 (252)
T ss_pred HHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 3344444432 1234778899999999999999999999999999999999999999999988764 3689999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|++|++. ..|..+++.
T Consensus 206 ~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 235 (252)
T PRK14272 206 NMHQAARVSDTTSFFLVGDLV-EHGPTDQLF 235 (252)
T ss_pred CHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999874 556655543
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=340.41 Aligned_cols=210 Identities=19% Similarity=0.267 Sum_probs=172.1
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~-------- 161 (555)
.++|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 81 (251)
T PRK14270 2 KIKMESKNLNLWYGEKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVV 81 (251)
T ss_pred ccEEEEEEeEEEECCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHH
Confidence 4679999999999888899999999999999999999999999999999999875 799999987432
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.++|++|++.++. .|+.+|+...... .. . ........
T Consensus 82 ~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 122 (251)
T PRK14270 82 ELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI---------------HG-I----------------------KDKKELDK 122 (251)
T ss_pred HHHhheEEEecCCCcCC-CcHHHHHHhHHHh---------------cC-C----------------------CcHHHHHH
Confidence 4899999988765 8999998532100 00 0 00011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+.. ...++++.+||||||||++|||||+.+|+||||||||++||+.++.++.+.|++ .+.|||+|
T Consensus 123 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiiv 202 (251)
T PRK14270 123 IVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIV 202 (251)
T ss_pred HHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4556677777632 345788999999999999999999999999999999999999999999988864 26899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. ..|+.++.
T Consensus 203 sH~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14270 203 THNMQQASRVSDYTAFFLMGDLI-EFNKTEKI 233 (251)
T ss_pred EcCHHHHHHhcCEEEEEECCeEE-EeCCHHHH
Confidence 99999999999999999999975 44665544
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=339.01 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=181.4
Q ss_pred cEEEEeEEEEeCC------------------------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 97 GVKLENISKSYKG------------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 97 ~i~l~nls~~y~~------------------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
.|+++||++-||. ..-++|+||+|+.||+..|.|-||||||||+|+|+++++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 4889999998864 1257999999999999999999999999999999999999999
Q ss_pred EEEEcCCCc--------------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Q 008750 153 NVIKAKSNM--------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218 (555)
Q Consensus 153 ~I~~~g~~~--------------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (555)
+|.++|.++ ++++|||.+.++|+.||.+|+..++.
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLe------------------------------- 132 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLE------------------------------- 132 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhccee-------------------------------
Confidence 999998753 69999999999999999999865431
Q ss_pred HHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHH
Q 008750 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL 298 (555)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l 298 (555)
.+.++..+.++++.++|+.+||. .+.+++|++|||||||||.|||||+.+|+|||+|||+|+|||-.+..+
T Consensus 133 --------v~Gv~~~er~~~a~~~l~~VgL~-~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~m 203 (386)
T COG4175 133 --------VQGVPKAEREERALEALELVGLE-GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEM 203 (386)
T ss_pred --------ecCCCHHHHHHHHHHHHHHcCch-hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHH
Confidence 02344556678899999999996 678999999999999999999999999999999999999999776666
Q ss_pred HHH----HcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 299 EGY----LGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 299 ~~~----l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+. .++.++||||||||++++.++.|||..|++|++ +..|...+.+.
T Consensus 204 QdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~i-vQ~Gtp~eIl~ 254 (386)
T COG4175 204 QDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEI-VQVGTPEEILL 254 (386)
T ss_pred HHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeE-EEeCCHHHHHc
Confidence 554 356799999999999999999999999999997 45677666554
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=339.56 Aligned_cols=208 Identities=20% Similarity=0.302 Sum_probs=168.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC-----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN----------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~----------- 160 (555)
.|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (250)
T PRK14240 3 KISVKDLDLFYGDFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQL 82 (250)
T ss_pred eEEEEEEEEEECCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHH
Confidence 58999999999888899999999999999999999999999999999999763 69999998743
Q ss_pred -ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 161 -MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 161 -~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
..++|++|++.+++ .|+.+|+...... .. ........+++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~ni~~~~~~---------------~~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14240 83 RKRVGMVFQQPNPFP-MSIYDNVAYGPRT---------------HG-----------------------IKDKKKLDEIV 123 (250)
T ss_pred hccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-----------------------CCCHHHHHHHH
Confidence 24899999987765 8999988532100 00 00001123345
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.++++.+++.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH 203 (250)
T PRK14240 124 EKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEe
Confidence 55666666531 245788899999999999999999999999999999999999999999988753 3789999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|++++.++||+|++|++|++. ..|+.+++
T Consensus 204 ~~~~~~~~~d~v~~l~~G~i~-~~~~~~~~ 232 (250)
T PRK14240 204 NMQQASRISDKTAFFLNGEIV-EFGDTVDL 232 (250)
T ss_pred CHHHHHhhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999975 44655544
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=332.55 Aligned_cols=189 Identities=28% Similarity=0.441 Sum_probs=161.3
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEE
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAF 165 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~ 165 (555)
++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 4799999988889999999999999999999999999999999999999999999998754 15999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+...... . .........++.++++.
T Consensus 81 ~~q~~~~~~~~t~~e~~~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~ 121 (206)
T TIGR03608 81 LFQNFALIENETVEENLDLGLKY---------------K------------------------KLSKKEKREKKKEALEK 121 (206)
T ss_pred EecchhhccCCcHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHH
Confidence 99999887789999987532100 0 00111224467788889
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+||||++++ .+
T Consensus 122 ~~l~-~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~ 199 (206)
T TIGR03608 122 VGLN-LKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQ 199 (206)
T ss_pred cCch-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hh
Confidence 9985 456888999999999999999999999999999999999999999999998854 488999999999987 47
Q ss_pred cceeEEe
Q 008750 323 CTKIVET 329 (555)
Q Consensus 323 ~dri~~l 329 (555)
||+|++|
T Consensus 200 ~d~i~~l 206 (206)
T TIGR03608 200 ADRVIEL 206 (206)
T ss_pred cCEEEeC
Confidence 9999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=344.54 Aligned_cols=211 Identities=21% Similarity=0.280 Sum_probs=170.9
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~-------- 160 (555)
..+.|+++||+++|++.++|+|+||+|.+||+++|+|+||||||||+++|+|+.+ |++|+|.++|.+
T Consensus 36 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 36 GKPHVVAKNFSIYYGEFEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred CceEEEEeeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 4567999999999988889999999999999999999999999999999999864 499999998742
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++.++. .||.+|+...... .. . .......
T Consensus 116 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~ 156 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFP-KSIFDNIAYGPRL---------------HG-I----------------------NDKKQLE 156 (286)
T ss_pred HHhhhcEEEECCCCCCCc-cCHHHHHHhHHHh---------------cC-C----------------------CcHHHHH
Confidence 25999999988765 5999998532100 00 0 0001122
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+|+. ....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+
T Consensus 157 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIi 236 (286)
T PRK14275 157 EIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMI 236 (286)
T ss_pred HHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEE
Confidence 3445566666653 2345788899999999999999999999999999999999999999999998864 3579999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||||++++..+||+|++|++|++. ..|...++
T Consensus 237 vsH~~~~~~~~~d~i~~L~~G~i~-~~g~~~~~ 268 (286)
T PRK14275 237 VTHNMQQASRVSDYTMFFYEGVLV-EHAPTAQL 268 (286)
T ss_pred EeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 999999999999999999999974 55665544
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=342.96 Aligned_cols=197 Identities=20% Similarity=0.318 Sum_probs=162.8
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------- 161 (555)
..++|+++||+++|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 10 ~~~~l~i~nl~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~ 89 (269)
T PRK14259 10 KNIIISLQNVTISYGTFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDP 89 (269)
T ss_pred CCceEEEEeEEEEECCEEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCH
Confidence 4467999999999998889999999999999999999999999999999999987 6999999987532
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.++. .||.+|+...... .. .. ...+
T Consensus 90 ~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~------------------------~~-~~~~ 128 (269)
T PRK14259 90 VEVRRRIGMVFQQPNPFP-KSIYENIAFGARI---------------NG------------------------YT-GDMD 128 (269)
T ss_pred HHHhhceEEEccCCccch-hhHHHHHhhhhhh---------------cC------------------------Cc-HHHH
Confidence 4999999987765 5999998532100 00 00 0112
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.++.++++.+++. ....++++.+|||||||||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 129 ~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii 208 (269)
T PRK14259 129 ELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVI 208 (269)
T ss_pred HHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 2344455555552 1345788899999999999999999999999999999999999999999998853 3689999
Q ss_pred EecCHHHHHhhcceeEEecC
Q 008750 312 ISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~ 331 (555)
||||++++..+||+|++|++
T Consensus 209 vtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 209 VTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred EeCCHHHHHHhcCEEEEEec
Confidence 99999999999999999997
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=331.60 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=164.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~ 80 (204)
T PRK13538 1 MLEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLG 80 (204)
T ss_pred CeEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeC
Confidence 47899999999988899999999999999999999999999999999999999999999987542 489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..|+.+|+...... .. .....++.++++.+|
T Consensus 81 ~~~~~~~~~tv~e~l~~~~~~-----------------------------------------~~-~~~~~~~~~~l~~~g 118 (204)
T PRK13538 81 HQPGIKTELTALENLRFYQRL-----------------------------------------HG-PGDDEALWEALAQVG 118 (204)
T ss_pred CccccCcCCcHHHHHHHHHHh-----------------------------------------cC-ccHHHHHHHHHHHcC
Confidence 998887788999997532100 00 012345677888999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||+++++.+.+
T Consensus 119 l~-~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~ 197 (204)
T PRK13538 119 LA-GFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKV 197 (204)
T ss_pred CH-HHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCc
Confidence 86 356889999999999999999999999999999999999999999999998754 47899999999999999888
Q ss_pred eeEEe
Q 008750 325 KIVET 329 (555)
Q Consensus 325 ri~~l 329 (555)
|++++
T Consensus 198 ~~~~~ 202 (204)
T PRK13538 198 RKLRL 202 (204)
T ss_pred eEEec
Confidence 88877
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-42 Score=345.04 Aligned_cols=207 Identities=25% Similarity=0.397 Sum_probs=172.9
Q ss_pred ccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
++|+++|++++|+ ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .+
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 4699999999995 46799999999999999999999999999999999999999999999987532 48
Q ss_pred EEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 164 AFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 164 g~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|++|++. .++..|+.+|+...... ..........++.++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~ 126 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLEN---------------------------------------KKVPPKKMKDIIDDL 126 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999974 55678999998532100 000111233457778
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.++|++ . +.|||++|||+++
T Consensus 127 l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 205 (271)
T PRK13632 127 AKKVGME-DYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205 (271)
T ss_pred HHHcCCH-HHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhH
Confidence 8899986 467889999999999999999999999999999999999999999999988854 2 5899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+. .||+|++|++|++. ..|+..++
T Consensus 206 ~~-~~d~v~~l~~G~i~-~~g~~~~~ 229 (271)
T PRK13632 206 AI-LADKVIVFSEGKLI-AQGKPKEI 229 (271)
T ss_pred Hh-hCCEEEEEECCEEE-EecCHHHH
Confidence 96 79999999999974 45665544
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-42 Score=335.14 Aligned_cols=195 Identities=27% Similarity=0.396 Sum_probs=164.4
Q ss_pred cEEEEeEEEEeCC-------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc--CC--C-----
Q 008750 97 GVKLENISKSYKG-------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA--KS--N----- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~-------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~--g~--~----- 160 (555)
+|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++ |. +
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 4789999999962 469999999999999999999999999999999999999999999997 31 1
Q ss_pred ---------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ---------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..++|++|++.+++..|+.+|+...... . ...
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~----------------~-----------------------~~~ 121 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE----------------R-----------------------GVP 121 (224)
T ss_pred HHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHH----------------c-----------------------CCC
Confidence 2589999999888889999987532100 0 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.....+++.++++.+|+.....++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|
T Consensus 122 ~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~t 201 (224)
T TIGR02324 122 REAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAA 201 (224)
T ss_pred HHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 1122345677888899975455788999999999999999999999999999999999999999999988753 4889
Q ss_pred EEEEecCHHHHHhhcceeEEec
Q 008750 309 MVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~ 330 (555)
||+||||++++..+||+|+.+.
T Consensus 202 ii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 202 LIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred EEEEeCCHHHHHHhcceeEecC
Confidence 9999999999999999999864
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=342.71 Aligned_cols=207 Identities=27% Similarity=0.397 Sum_probs=171.5
Q ss_pred ccEEEEeEEEEeC---------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------
Q 008750 96 SGVKLENISKSYK---------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------ 160 (555)
Q Consensus 96 ~~i~l~nls~~y~---------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------ 160 (555)
++|+++||++.|+ ++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 3689999999997 4689999999999999999999999999999999999999999999998853
Q ss_pred -------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 -------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..++|++|++. +++..|+.+++...... .. ...
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~--------------~~------------------------~~~ 123 (268)
T PRK10419 82 AQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRH--------------LL------------------------SLD 123 (268)
T ss_pred hHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHh--------------hc------------------------cCC
Confidence 25999999973 44567898886422100 00 001
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCc
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDV 307 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~ 307 (555)
......++.++++.+|+.....++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.
T Consensus 124 ~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~ 203 (268)
T PRK10419 124 KAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGT 203 (268)
T ss_pred HHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCc
Confidence 1122345778888999965567889999999999999999999999999999999999999999888887642 488
Q ss_pred eEEEEecCHHHHHhhcceeEEecCCeEeeccCCh
Q 008750 308 PMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 308 tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y 341 (555)
|+|+||||++++..+||+|++|++|++. ..|..
T Consensus 204 tiiivsH~~~~i~~~~d~i~~l~~G~i~-~~g~~ 236 (268)
T PRK10419 204 ACLFITHDLRLVERFCQRVMVMDNGQIV-ETQPV 236 (268)
T ss_pred EEEEEECCHHHHHHhCCEEEEEECCEEe-eeCCh
Confidence 9999999999999999999999999874 44543
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=332.46 Aligned_cols=196 Identities=26% Similarity=0.371 Sum_probs=166.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
++++||++.|+. ++.|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 ~~~~~l~~~~~~--~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (213)
T TIGR01277 1 LALDKVRYEYEH--LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPYQRPVSMLFQE 78 (213)
T ss_pred CeEEeeeEEeCC--cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCChhccceEEEecc
Confidence 478999999974 5789999999999999999999999999999999999999999998854 249999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...+.... ......+.++.++++.+|+.
T Consensus 79 ~~~~~~~t~~en~~~~~~~~~---------------------------------------~~~~~~~~~~~~~l~~~~l~ 119 (213)
T TIGR01277 79 NNLFAHLTVRQNIGLGLHPGL---------------------------------------KLNAEQQEKVVDAAQQVGIA 119 (213)
T ss_pred CccCCCCcHHHHHHhHhhccC---------------------------------------CccHHHHHHHHHHHHHcCcH
Confidence 988788899999853211000 00001234567788889996
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|+||||++++..+||+
T Consensus 120 -~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~ 198 (213)
T TIGR01277 120 -DYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQ 198 (213)
T ss_pred -HHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCe
Confidence 456889999999999999999999999999999999999999999988887743 478999999999999999999
Q ss_pred eEEecCCeEe
Q 008750 326 IVETEMGVSR 335 (555)
Q Consensus 326 i~~l~~G~~~ 335 (555)
+++|++|++.
T Consensus 199 v~~l~~g~i~ 208 (213)
T TIGR01277 199 IAVVSQGKIK 208 (213)
T ss_pred EEEEECCeEE
Confidence 9999999874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=346.06 Aligned_cols=208 Identities=22% Similarity=0.325 Sum_probs=173.2
Q ss_pred ccEEEEeEEEEeCC------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------
Q 008750 96 SGVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------- 161 (555)
++|+++||+++|++ +++|+||||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 82 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWD 82 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHH
Confidence 56999999999963 4699999999999999999999999999999999999999999999987432
Q ss_pred ---eEEEEeccccc-CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ---KIAFLSQEFEV-SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ---~ig~v~Q~~~~-~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.+||++|++.. ++..||.+|+...... ..+.......
T Consensus 83 ~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~---------------------------------------~~~~~~~~~~ 123 (280)
T PRK13633 83 IRNKAGMVFQNPDNQIVATIVEEDVAFGPEN---------------------------------------LGIPPEEIRE 123 (280)
T ss_pred HhhheEEEecChhhhhccccHHHHHHhhHhh---------------------------------------cCCCHHHHHH
Confidence 48999999742 3456888887432100 0011122345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEe
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIIS 313 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiS 313 (555)
++.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..|.+.|++ .|.|||+||
T Consensus 124 ~~~~~l~~~gL~-~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvt 202 (280)
T PRK13633 124 RVDESLKKVGMY-EYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILIT 202 (280)
T ss_pred HHHHHHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 678889999996 567899999999999999999999999999999999999999999999988753 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++.. ||++++|++|++. +.|+..++.
T Consensus 203 H~~~~~~~-~d~v~~l~~G~i~-~~g~~~~~~ 232 (280)
T PRK13633 203 HYMEEAVE-ADRIIVMDSGKVV-MEGTPKEIF 232 (280)
T ss_pred cChHHHhc-CCEEEEEECCEEE-EecCHHHHh
Confidence 99999976 9999999999864 567766654
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=356.32 Aligned_cols=197 Identities=26% Similarity=0.396 Sum_probs=168.2
Q ss_pred eEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEe
Q 008750 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLS 167 (555)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~ 167 (555)
||+++|++..+ |+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++
T Consensus 4 ~l~~~~~~~~~--~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~ 81 (354)
T TIGR02142 4 RFSKRLGDFSL--DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVF 81 (354)
T ss_pred EEEEEECCEEE--EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEe
Confidence 89999987654 9999999999999999999999999999999999999999998742 2489999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++.+||.+|+...... ....+...++.++++.+|
T Consensus 82 q~~~l~~~~tv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~g 120 (354)
T TIGR02142 82 QEARLFPHLSVRGNLRYGMKR-----------------------------------------ARPSERRISFERVIELLG 120 (354)
T ss_pred cCCccCCCCcHHHHHHHHhhc-----------------------------------------cChhHHHHHHHHHHHHcC
Confidence 999888889999998532110 001122345778889999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~ 323 (555)
+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+.|+|+||||++++..+|
T Consensus 121 L~-~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~ 199 (354)
T TIGR02142 121 IG-HLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLA 199 (354)
T ss_pred Ch-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhC
Confidence 96 467899999999999999999999999999999999999999999988887753 4899999999999999999
Q ss_pred ceeEEecCCeEeeccCChHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~ 343 (555)
|+|++|++|++. ..|...+
T Consensus 200 d~i~~l~~G~i~-~~g~~~~ 218 (354)
T TIGR02142 200 DRVVVLEDGRVA-AAGPIAE 218 (354)
T ss_pred CEEEEEeCCEEE-EECCHHH
Confidence 999999999974 4565544
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=343.14 Aligned_cols=210 Identities=19% Similarity=0.302 Sum_probs=172.3
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc------
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------ 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------ 161 (555)
...++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 35 ~~~~~l~i~~l~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 35 SGETVIEARDLNVFYGDEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred CCCceEEEEEEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 34678999999999988889999999999999999999999999999999999987 6899999987432
Q ss_pred ------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 162 ------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
.++|++|++.+++ .||.+|+...... . ... ...
T Consensus 115 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~------------------------~~~-~~~ 153 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFP-KSIYDNVAYGLKI---------------Q------------------------GYD-GDI 153 (285)
T ss_pred hHhhhccEEEEecCCccCc-CCHHHHHHHHHHH---------------c------------------------CCc-HHH
Confidence 4899999987755 4999987532100 0 000 012
Q ss_pred HHHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEE
Q 008750 236 DAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMV 310 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvI 310 (555)
..++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++++.++|++. +.|||
T Consensus 154 ~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tii 233 (285)
T PRK14254 154 DERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVV 233 (285)
T ss_pred HHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEE
Confidence 345667777788742 3457889999999999999999999999999999999999999999999888642 57999
Q ss_pred EEecCHHHHHhhcceeE-EecCCeEeeccCChHHH
Q 008750 311 IISHDRAFLDQLCTKIV-ETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~-~l~~G~~~~~~G~y~~~ 344 (555)
+||||++++..+|||++ +|++|++. ..|+..++
T Consensus 234 i~tH~~~~i~~~~dri~v~l~~G~i~-~~g~~~~~ 267 (285)
T PRK14254 234 IVTHNMQQAARISDKTAVFLTGGELV-EFDDTDKI 267 (285)
T ss_pred EEeCCHHHHHhhcCEEEEEeeCCEEE-EeCCHHHH
Confidence 99999999999999975 67999975 45665544
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=338.82 Aligned_cols=206 Identities=20% Similarity=0.290 Sum_probs=170.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCCC--------ceEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~g~~--------~~ig 164 (555)
.|+++||+++| ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..++
T Consensus 4 ~l~~~~l~~~~-~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~i~ 82 (254)
T PRK10418 4 QIELRNIALQA-AQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPCALRGRKIA 82 (254)
T ss_pred EEEEeCeEEEe-ccceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeeccccccccceEE
Confidence 58999999999 66899999999999999999999999999999999999999 99999998854 2599
Q ss_pred EEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 165 FLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 165 ~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|++|++. +.+..|+.+++..... .......+.++.++
T Consensus 83 ~v~q~~~~~~~~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~ 121 (254)
T PRK10418 83 TIMQNPRSAFNPLHTMHTHARETCL-----------------------------------------ALGKPADDATLTAA 121 (254)
T ss_pred EEecCCccccCccccHHHHHHHHHH-----------------------------------------HcCCChHHHHHHHH
Confidence 9999974 3344577666532100 00001112456778
Q ss_pred hhhcCCCcc--ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH
Q 008750 243 MPELGFTAD--DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (555)
Q Consensus 243 l~~lgl~~~--~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~ 316 (555)
++.+|+... ..++++.+|||||+|||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+||||+
T Consensus 122 l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~ 201 (254)
T PRK10418 122 LEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM 201 (254)
T ss_pred HHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH
Confidence 888998642 45788999999999999999999999999999999999999999988887753 478999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+++..+||+|++|++|++ ...|+..++.
T Consensus 202 ~~~~~~~d~v~~l~~G~i-~~~~~~~~~~ 229 (254)
T PRK10418 202 GVVARLADDVAVMSHGRI-VEQGDVETLF 229 (254)
T ss_pred HHHHHhCCEEEEEECCEE-EEecCHHHHh
Confidence 999999999999999987 4567766554
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=338.01 Aligned_cols=209 Identities=22% Similarity=0.285 Sum_probs=170.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~---------- 160 (555)
++|+++||++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred ceEEEEeeEEEeCCceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 368999999999888899999999999999999999999999999999999874 89999998742
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.++. .|+++|+...... ... ......+..
T Consensus 82 ~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~---------------~~~-----------------------~~~~~~~~~ 122 (250)
T PRK14262 82 YRKKVGMVFQKPTPFP-MSIYDNVAFGPRI---------------HGV-----------------------KSKHKLDRI 122 (250)
T ss_pred hhhhEEEEecCCccCc-ccHHHHHHHHHHH---------------cCC-----------------------CcHHHHHHH
Confidence 25999999988765 8999998532110 000 000012234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|+|+||
T Consensus 123 ~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~s 202 (250)
T PRK14262 123 VEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVT 202 (250)
T ss_pred HHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 555666677642 235788899999999999999999999999999999999999999999998754 368999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. ..|..+++
T Consensus 203 H~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 232 (250)
T PRK14262 203 HNIGQAIRIADYIAFMYRGELI-EYGPTREI 232 (250)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EecCHHHH
Confidence 9999999999999999999975 45665544
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=342.58 Aligned_cols=211 Identities=23% Similarity=0.329 Sum_probs=172.8
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
.++|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 19 ~~~l~i~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 19 APAMAAVNLTLGFAGKTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred CcEEEEeeEEEEECCEEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 4679999999999988999999999999999999999999999999999999985 79999998743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++ .|+.+|+....... . .....+....
T Consensus 99 ~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~---------------~-----------------------~~~~~~~~~~ 139 (276)
T PRK14271 99 FRRRVGMLFQRPNPFP-MSIMDNVLAGVRAH---------------K-----------------------LVPRKEFRGV 139 (276)
T ss_pred HhhheEEeccCCccCC-ccHHHHHHHHHHhc---------------c-----------------------CCCHHHHHHH
Confidence 24899999988765 89999885321100 0 0001112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|||+||
T Consensus 140 ~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivs 219 (276)
T PRK14271 140 AQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVT 219 (276)
T ss_pred HHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 556677777753 235678899999999999999999999999999999999999999999988754 258999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++..+||+|++|++|++. ..|..+++.
T Consensus 220 H~~~~~~~~~dri~~l~~G~i~-~~g~~~~~~ 250 (276)
T PRK14271 220 HNLAQAARISDRAALFFDGRLV-EEGPTEQLF 250 (276)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 9999999999999999999874 456655543
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=335.85 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=174.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q~ 169 (555)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|+
T Consensus 1 i~i~~l~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~~~~~i~~~~q~ 80 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHARDRKIGFVFQH 80 (237)
T ss_pred CEEEEEEEEECCeeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChhhcCEEEEecC
Confidence 478999999998899999999999999999999999999999999999999999999998743 258999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+...... . ........+.+.++++.+++.
T Consensus 81 ~~~~~~~t~~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~ 121 (237)
T TIGR00968 81 YALFKHLTVRDNIAFGLEI---------------R------------------------KHPKAKIKARVEELLELVQLE 121 (237)
T ss_pred hhhccCCcHHHHHHhHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCCH
Confidence 9887788999987532100 0 000111234566788888886
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dr 325 (555)
...++.+.+|||||+||++|||||+.+|+++||||||++||+.+++++.++|.+ .+.|||++||+++++..+||+
T Consensus 122 -~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~ 200 (237)
T TIGR00968 122 -GLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADR 200 (237)
T ss_pred -hHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCE
Confidence 567888999999999999999999999999999999999999999999998854 378999999999999999999
Q ss_pred eEEecCCeEeeccCChHHH
Q 008750 326 IVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~ 344 (555)
|++|++|++. ..|..+++
T Consensus 201 i~~l~~g~i~-~~~~~~~~ 218 (237)
T TIGR00968 201 IVVMSNGKIE-QIGSPDEV 218 (237)
T ss_pred EEEEECCEEE-EecCHHHH
Confidence 9999999975 45555544
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=338.29 Aligned_cols=205 Identities=22% Similarity=0.322 Sum_probs=165.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~--------- 160 (555)
.++|+++||+++|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++ | ++|+|.++|.+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (252)
T PRK14255 3 KKIITSSDVHLFYGKFEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVV 82 (252)
T ss_pred cceEEEEeEEEEECCeeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHH
Confidence 356999999999988889999999999999999999999999999999999975 5 58999998753
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++ .|+.+|+...... .. .. .....+.
T Consensus 83 ~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~---------------~~-~~----------------------~~~~~~~ 123 (252)
T PRK14255 83 QLRKQVGMVFQQPNPFP-FSIYENVIYGLRL---------------AG-VK----------------------DKAVLDE 123 (252)
T ss_pred HhcCeEEEEECCCccCC-CcHHHHHHHHHHH---------------cC-CC----------------------CHHHHHH
Confidence 25999999988766 7999997532100 00 00 0000122
Q ss_pred HHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.+.++.+++. ....++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|
T Consensus 124 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~v 203 (252)
T PRK14255 124 AVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILV 203 (252)
T ss_pred HHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEE
Confidence 334445555542 1245778899999999999999999999999999999999999999999988754 25899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeecc
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYE 338 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~ 338 (555)
|||++++.++||+|++|++|++..+.
T Consensus 204 sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 204 THSMHQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999986543
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=342.34 Aligned_cols=212 Identities=20% Similarity=0.296 Sum_probs=169.1
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM------- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~------- 161 (555)
..++|+++||++.|+++++|+|+||+|.+||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 21 ~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 21 KKVVFDTQNLNLWYGEDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred CceEEEEeeeEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 3567999999999988889999999999999999999999999999999999987 6999999987432
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++.+++ .|+.+|+...... .. ..+ ....+
T Consensus 101 ~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~---------------~~-~~~----------------------~~~~~ 141 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFP-KSIYDNVTYGPKI---------------HG-IKD----------------------KKTLD 141 (271)
T ss_pred HHHhhhEEEEecCCcccc-ccHHHHHHHHHHh---------------cC-CCc----------------------HHHHH
Confidence 4999999988755 5999998542110 00 000 00011
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
..+.++++.+++. ....++++.+||||||||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+
T Consensus 142 ~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii 221 (271)
T PRK14238 142 EIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIII 221 (271)
T ss_pred HHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEE
Confidence 2233344444321 1234678899999999999999999999999999999999999999999988754 3689999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++..+||+|++|++|++. ..|...++.
T Consensus 222 vsH~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~ 254 (271)
T PRK14238 222 VTHNMQQAARISDKTAFFLNGYVN-EYDDTDKIF 254 (271)
T ss_pred EEcCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999974 456666543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=345.20 Aligned_cols=208 Identities=23% Similarity=0.372 Sum_probs=174.6
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc---eEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---GNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---G~I~~~g~~~--------- 161 (555)
.+|+++|+++.|++ +++|+||||+|.+||++||+|+||||||||+++|+|+++|++ |+|.++|.+.
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 46999999999964 469999999999999999999999999999999999999998 8999988532
Q ss_pred -eEEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 -KIAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 -~ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.|||++|++. .++..||.+|+...... ......+..+++
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~---------------------------------------~~~~~~~~~~~~ 124 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLEN---------------------------------------RAVPRPEMIKIV 124 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHh---------------------------------------CCCCHHHHHHHH
Confidence 5899999984 55778999998532100 001112234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.++++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 125 ~~~l~~~~L~-~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~ 203 (282)
T PRK13640 125 RDVLADVGML-DYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD 203 (282)
T ss_pred HHHHHHCCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 7889999996 467899999999999999999999999999999999999999999999888753 48899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++++. .||+|++|++|++. ..|+..++.
T Consensus 204 ~~~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 231 (282)
T PRK13640 204 IDEAN-MADQVLVLDDGKLL-AQGSPVEIF 231 (282)
T ss_pred HHHHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 99995 79999999999975 556665543
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=357.46 Aligned_cols=204 Identities=24% Similarity=0.332 Sum_probs=174.2
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----C--------------ce
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----N--------------MK 162 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~----~--------------~~ 162 (555)
.++.++|+...+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. + ..
T Consensus 28 ~~~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~ 107 (382)
T TIGR03415 28 EEILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHR 107 (382)
T ss_pred HHHHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCC
Confidence 45677888888999999999999999999999999999999999999999999999873 1 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+|++|++.+++..||.+|+..+... ..+.......++.++
T Consensus 108 i~~vfQ~~~l~p~~Tv~eNi~~~~~~---------------------------------------~g~~~~~~~~~a~e~ 148 (382)
T TIGR03415 108 VSMVFQKFALMPWLTVEENVAFGLEM---------------------------------------QGMPEAERRKRVDEQ 148 (382)
T ss_pred EEEEECCCcCCCCCcHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998889999998643100 001112234567888
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~ 318 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|. +.++||||||||+++
T Consensus 149 le~vgL~-~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e 227 (382)
T TIGR03415 149 LELVGLA-QWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDE 227 (382)
T ss_pred HHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 9999996 56789999999999999999999999999999999999999999999988764 248999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+.++||||++|++|++. ..|+.+++.
T Consensus 228 ~~~l~DrI~vl~~G~iv-~~g~~~ei~ 253 (382)
T TIGR03415 228 ALKIGNRIAIMEGGRII-QHGTPEEIV 253 (382)
T ss_pred HHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 99999999999999974 457665554
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=386.01 Aligned_cols=214 Identities=23% Similarity=0.395 Sum_probs=168.8
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
...|+++||+|+|++ +++|+|+||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 475 ~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~ 554 (710)
T TIGR03796 475 SGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANS 554 (710)
T ss_pred CCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhh
Confidence 346999999999974 5799999999999999999999999999999999999999999999998653 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+||+|++.+ |+.|++||+...-.. .. .+++.+.++. ..+.+.+..+
T Consensus 555 i~~v~Q~~~l-f~gTi~eNi~l~~~~-~~----~~~i~~al~~---------------------------~~l~~~i~~l 601 (710)
T TIGR03796 555 VAMVDQDIFL-FEGTVRDNLTLWDPT-IP----DADLVRACKD---------------------------AAIHDVITSR 601 (710)
T ss_pred eeEEecCChh-hhccHHHHhhCCCCC-CC----HHHHHHHHHH---------------------------hCCHHHHHhC
Confidence 9999999987 678999999643110 00 0000011100 0111111111
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhh
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~ 322 (555)
- .|++....+ ...+||||||||++|||||+.+|++||||||||+||+.+++.+.+.|++.++|+|+|||+++.+..
T Consensus 602 p--~gl~t~i~e-~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~~~~T~IiitHrl~~i~~- 677 (710)
T TIGR03796 602 P--GGYDAELAE-GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRRGCTCIIVAHRLSTIRD- 677 (710)
T ss_pred c--Ccccceecc-CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHhcCCEEEEEecCHHHHHh-
Confidence 1 144332222 246899999999999999999999999999999999999999999998889999999999999975
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+|++|++|+++ ..|++++..+
T Consensus 678 ~D~Iivl~~G~i~-~~G~~~~Ll~ 700 (710)
T TIGR03796 678 CDEIIVLERGKVV-QRGTHEELWA 700 (710)
T ss_pred CCEEEEEeCCEEE-EecCHHHHHH
Confidence 9999999999974 5788887654
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=383.68 Aligned_cols=255 Identities=23% Similarity=0.348 Sum_probs=186.2
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC--CceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~ 125 (555)
.+......+.+++.+....+++.+....+.+... .... .......|+++||+|+|+ ++++|+|+||+|++||+
T Consensus 407 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~--~~~~---~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~ 481 (686)
T TIGR03797 407 AVTQLSNTLISILAVIPLWERAKPILEALPEVDE--AKTD---PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEF 481 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc--CcCC---CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCE
Confidence 4444555555666666666666554332221110 0000 011234599999999995 35799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+|+|+|+++|++|+|.++|.+. .||||+|++.+ |+.|++||+..+.. ..
T Consensus 482 vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~~~~~--~~---- 554 (686)
T TIGR03797 482 VAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRL-MSGSIFENIAGGAP--LT---- 554 (686)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCcc-CcccHHHHHhcCCC--CC----
Confidence 999999999999999999999999999999998653 59999999988 67899999975311 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++...++. ..+...+..+-. |++.... ....+||||||||++|||||+
T Consensus 555 ~e~i~~al~~---------------------------a~l~~~i~~lp~--G~dt~ig-e~G~~LSGGQrQRialARAll 604 (686)
T TIGR03797 555 LDEAWEAARM---------------------------AGLAEDIRAMPM--GMHTVIS-EGGGTLSGGQRQRLLIARALV 604 (686)
T ss_pred HHHHHHHHHH---------------------------cCcHHHHHhccc--ccccccc-CCCCCCCHHHHHHHHHHHHHh
Confidence 0001111110 111112222111 3332222 223589999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++||||||||+||+.+++.+.+.|++.++|+|+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 605 ~~p~iLiLDEpTS~LD~~te~~i~~~L~~~~~T~IiItHr~~~i~~-~D~Iivl~~G~iv-~~G~~~~Ll~ 673 (686)
T TIGR03797 605 RKPRILLFDEATSALDNRTQAIVSESLERLKVTRIVIAHRLSTIRN-ADRIYVLDAGRVV-QQGTYDELMA 673 (686)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhCCeEEEEecChHHHHc-CCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999999999999999999999998888999999999999965 9999999999974 6788887654
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=343.00 Aligned_cols=208 Identities=24% Similarity=0.408 Sum_probs=172.8
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
.++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 5 ~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (269)
T PRK13648 5 NSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKH 84 (269)
T ss_pred CceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhh
Confidence 456999999999975 3599999999999999999999999999999999999999999999998542 4
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|++|++. .++..|+.+|+...... . .........++.+
T Consensus 85 i~~v~q~~~~~~~~~~v~~~~~~~~~~-----------------~----------------------~~~~~~~~~~~~~ 125 (269)
T PRK13648 85 IGIVFQNPDNQFVGSIVKYDVAFGLEN-----------------H----------------------AVPYDEMHRRVSE 125 (269)
T ss_pred eeEEEeChHHhcccccHHHHHHhhHHh-----------------c----------------------CCCHHHHHHHHHH
Confidence 899999985 55667888887432100 0 0011122345677
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++ .+.|||+||||++
T Consensus 126 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~ 204 (269)
T PRK13648 126 ALKQVDML-ERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLS 204 (269)
T ss_pred HHHHcCCc-hhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCch
Confidence 88889986 466888999999999999999999999999999999999999999999888753 4789999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++.. ||+|++|++|++. +.|..+++
T Consensus 205 ~~~~-~d~i~~l~~G~i~-~~g~~~~~ 229 (269)
T PRK13648 205 EAME-ADHVIVMNKGTVY-KEGTPTEI 229 (269)
T ss_pred HHhc-CCEEEEEECCEEE-EecCHHHH
Confidence 9985 9999999999974 45666554
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=337.12 Aligned_cols=209 Identities=19% Similarity=0.278 Sum_probs=168.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~---------- 160 (555)
+.|+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 3 ~~l~~~~l~~~~~~~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 3 PKIKIRGVNFFYHKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred ceEEEEEEEEEECCeeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 4699999999998888999999999999999999999999999999999999997 6999988742
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++ .|+.+|+...... ... ......+..
T Consensus 83 ~~~~i~~v~q~~~~~~-~tv~enl~~~~~~---------------~~~-----------------------~~~~~~~~~ 123 (251)
T PRK14249 83 LRKRVGMVFQQPNPFP-KSIFDNVAFGPRM---------------LGT-----------------------TAQSRLDEV 123 (251)
T ss_pred hhceEEEEecCCccCc-CcHHHHHhhHHHh---------------cCC-----------------------ChhhHHHHH
Confidence 24999999988765 5999998532100 000 000011223
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+..+++.+|+.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+||
T Consensus 124 ~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivs 203 (251)
T PRK14249 124 VEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVT 203 (251)
T ss_pred HHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 444455555431 245788899999999999999999999999999999999999999999888754 478999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||++++..+||+|++|++|++. +.|...+.
T Consensus 204 h~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 233 (251)
T PRK14249 204 HNMQQAARASDWTGFLLTGDLV-EYGRTGEI 233 (251)
T ss_pred CCHHHHHhhCCEEEEEeCCeEE-EeCCHHHH
Confidence 9999999999999999999874 44555443
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=336.84 Aligned_cols=213 Identities=22% Similarity=0.291 Sum_probs=170.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC-----------ceE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~-----------~~i 163 (555)
+|+++||++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred CeEEEEEEEEeCCeeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 478999999998888999999999999999999999999999999999995 6999999999853 249
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++..++.+++...... + ... .....+.......++.+++
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~----------~----~~~------------------~~~~~~~~~~~~~~~~~~l 128 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNA----------V----RSY------------------RGQEPLDRFDFQDLMEEKI 128 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhh----------h----hcc------------------cccccchHHHHHHHHHHHH
Confidence 9999998776655654443211100 0 000 0000011123345677788
Q ss_pred hhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l 319 (555)
+.++++....++.+. +|||||||||+|||||+.+|++|||||||++||+.+++++.+.++ +.+.|||+||||++++
T Consensus 129 ~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~ 208 (248)
T PRK09580 129 ALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRIL 208 (248)
T ss_pred HHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 889997556677775 799999999999999999999999999999999999999988664 4578999999999999
Q ss_pred Hhh-cceeEEecCCeEeeccCChH
Q 008750 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 320 ~~~-~dri~~l~~G~~~~~~G~y~ 342 (555)
..+ ||+|++|++|++ .+.|+++
T Consensus 209 ~~~~~d~i~~l~~g~i-~~~g~~~ 231 (248)
T PRK09580 209 DYIKPDYVHVLYQGRI-VKSGDFT 231 (248)
T ss_pred HhhhCCEEEEEECCeE-EEeCCHH
Confidence 887 899999999987 4567776
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=341.95 Aligned_cols=210 Identities=23% Similarity=0.296 Sum_probs=173.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC--------ceEEEEcCCCc-------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--------SGNVIKAKSNM------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--------~G~I~~~g~~~------- 161 (555)
+|+++|++++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|+ +|+|.++|.+.
T Consensus 1 ml~~~nl~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred CeEEEEEEEEECCEeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 489999999999889999999999999999999999999999999999999998 99999988532
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.++|++|++..++..|+.+|+......... . . ..........
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~-------------~-~---------------------~~~~~~~~~~ 125 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHAR-------------R-A---------------------GALTHRDGEI 125 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhccccccc-------------c-c---------------------ccCCHHHHHH
Confidence 379999998766778999998542100000 0 0 0000112345
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc---------cCCCEEEEcCCCCCCCHHHHHHHHHHHcC----C
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----Q 305 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~---------~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~ 305 (555)
+.++++.+|+.. ..++++.+|||||+|||+|||||+ .+|++|||||||++||+.+++++.++|++ .
T Consensus 126 ~~~~l~~~~l~~-~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~ 204 (272)
T PRK13547 126 AWQALALAGATA-LVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW 204 (272)
T ss_pred HHHHHHHcCcHh-hhcCCcccCCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc
Confidence 677888899863 568899999999999999999999 59999999999999999999999988753 3
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
+.|||+||||++++..+||+|++|++|++. +.|+..+
T Consensus 205 ~~tviiisH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~ 241 (272)
T PRK13547 205 NLGVLAIVHDPNLAARHADRIAMLADGAIV-AHGAPAD 241 (272)
T ss_pred CCEEEEEECCHHHHHHhCCEEEEEECCeEE-EecCHHH
Confidence 899999999999999999999999999874 4565444
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=343.16 Aligned_cols=208 Identities=24% Similarity=0.336 Sum_probs=173.7
Q ss_pred ccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
++|+++||+++|++ .++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 82 (277)
T PRK13642 3 KILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRK 82 (277)
T ss_pred ceEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcc
Confidence 36899999999974 3599999999999999999999999999999999999999999999987532 4
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
++|++|++. .++..||.+|+...... . ........+++..
T Consensus 83 i~~v~q~~~~~~~~~tv~eni~~~~~~----------------~-----------------------~~~~~~~~~~~~~ 123 (277)
T PRK13642 83 IGMVFQNPDNQFVGATVEDDVAFGMEN----------------Q-----------------------GIPREEMIKRVDE 123 (277)
T ss_pred eEEEEECHHHhhccCCHHHHHHhhHHH----------------c-----------------------CCCHHHHHHHHHH
Confidence 899999974 55678999998532100 0 0011122345677
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.+.|. +.|.|||+||||++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~ 202 (277)
T PRK13642 124 ALLAVNML-DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLD 202 (277)
T ss_pred HHHHCCCH-hHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 88888985 46788999999999999999999999999999999999999999999988874 24899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++. .||+|++|++|+++ ..|+.+++.
T Consensus 203 ~~~-~~d~i~~l~~G~i~-~~g~~~~~~ 228 (277)
T PRK13642 203 EAA-SSDRILVMKAGEII-KEAAPSELF 228 (277)
T ss_pred HHH-hCCEEEEEECCEEE-EeCCHHHHh
Confidence 997 59999999999974 567766654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=375.33 Aligned_cols=258 Identities=24% Similarity=0.343 Sum_probs=187.0
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEe-CCceeeeeeeEEEECCCE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~ 125 (555)
.++......+...+.+..+.+++.+....+..... ....... ......|+++||+|.| +++++|+|+||+|++|++
T Consensus 302 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~-~~~~~~~--~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~ 378 (588)
T PRK11174 302 QPLRDLGTFYHAKAQAVGAAESLVTFLETPLAHPQ-QGEKELA--SNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQR 378 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccC-CCccccC--CCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCE
Confidence 34555555556677777777777665433221100 0000000 0112359999999766 567899999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+++|+|++ |++|+|.++|.+. .|+||+|++.+ |+.|++||+..+-.+ ..
T Consensus 379 vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~L-F~~TI~eNI~~g~~~-~~---- 451 (588)
T PRK11174 379 IALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQL-PHGTLRDNVLLGNPD-AS---- 451 (588)
T ss_pred EEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcC-CCcCHHHHhhcCCCC-CC----
Confidence 9999999999999999999999 9999999998653 59999999987 778999999754210 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
.+++.+.++. .. +.+.+..+ |++....++ ...||||||||++||||
T Consensus 452 ~eei~~al~~---------------------------a~----l~~~i~~lp~G~dT~vge~-G~~LSGGQrQRialARA 499 (588)
T PRK11174 452 DEQLQQALEN---------------------------AW----VSEFLPLLPQGLDTPIGDQ-AAGLSVGQAQRLALARA 499 (588)
T ss_pred HHHHHHHHHH---------------------------hC----HHHHHHhcccccccccccC-CCCCCHHHHHHHHHHHH
Confidence 0000011100 01 11222222 444332222 45799999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~ 348 (555)
|+.+|+|||||||||+||.++.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|++++....+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i-~e~G~~~eL~~~~ 574 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQI-VQQGDYAELSQAG 574 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeE-eecCCHHHHHhcc
Confidence 9999999999999999999999999988764 4799999999999996 4999999999987 4678888876543
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=328.73 Aligned_cols=186 Identities=25% Similarity=0.412 Sum_probs=163.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~Q 168 (555)
|+++||++.|+++.+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4789999999988999999999999999999999999999999999999999999999987542 5899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+++|+..... ...++++.++++.+|+
T Consensus 81 ~~~~~~~~tv~e~l~~~~~---------------------------------------------~~~~~~~~~~l~~~~l 115 (201)
T cd03231 81 APGIKTTLSVLENLRFWHA---------------------------------------------DHSDEQVEEALARVGL 115 (201)
T ss_pred ccccCCCcCHHHHHHhhcc---------------------------------------------cccHHHHHHHHHHcCC
Confidence 9888788999999753210 0013456677888888
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.+.|++ .+.|+|+||||...+..+|++
T Consensus 116 ~-~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~ 194 (201)
T cd03231 116 N-GFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGAR 194 (201)
T ss_pred h-hhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccce
Confidence 6 346888999999999999999999999999999999999999999999998853 489999999999999999999
Q ss_pred eEEe
Q 008750 326 IVET 329 (555)
Q Consensus 326 i~~l 329 (555)
++++
T Consensus 195 ~~~~ 198 (201)
T cd03231 195 ELDL 198 (201)
T ss_pred eEec
Confidence 9887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-41 Score=378.81 Aligned_cols=212 Identities=21% Similarity=0.346 Sum_probs=178.1
Q ss_pred CccEEEEeEEEEeCC-----------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---
Q 008750 95 SSGVKLENISKSYKG-----------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-----------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--- 160 (555)
.++|+++||++.|+. ..+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 367999999999961 469999999999999999999999999999999999999999999998742
Q ss_pred ----------ceEEEEeccc--ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 008750 161 ----------MKIAFLSQEF--EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (555)
Q Consensus 161 ----------~~ig~v~Q~~--~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (555)
..|+||+|++ .+++.+||.+++...+.. ..
T Consensus 391 ~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~---------------~~----------------------- 432 (623)
T PRK10261 391 LSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRV---------------HG----------------------- 432 (623)
T ss_pred CCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHH---------------cC-----------------------
Confidence 2599999997 466788999998532100 00
Q ss_pred hcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----C
Q 008750 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (555)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~ 304 (555)
.........++.++|+.+||+....++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +
T Consensus 433 ~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~ 512 (623)
T PRK10261 433 LLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRD 512 (623)
T ss_pred CCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHh
Confidence 000112345678899999996556789999999999999999999999999999999999999999999998873 3
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|.|||+||||++++..+||+|++|++|+++ ..|...++.
T Consensus 513 ~g~tvi~isHdl~~v~~~~dri~vl~~G~iv-~~g~~~~i~ 552 (623)
T PRK10261 513 FGIAYLFISHDMAVVERISHRVAVMYLGQIV-EIGPRRAVF 552 (623)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EecCHHHHh
Confidence 5899999999999999999999999999974 567665543
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=336.47 Aligned_cols=208 Identities=19% Similarity=0.305 Sum_probs=169.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~---------- 161 (555)
+|+++|+++.|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~ 82 (249)
T PRK14253 3 KFNIENLDLFYGENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLR 82 (249)
T ss_pred eEEEeccEEEECCeeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHH
Confidence 58999999999988899999999999999999999999999999999999986 599999987432
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.++|++|++.+++ .||.+|+...... .. .. .....++++.
T Consensus 83 ~~i~~~~q~~~~~~-~tv~~~l~~~~~~---------------~~-~~----------------------~~~~~~~~~~ 123 (249)
T PRK14253 83 IKVGMVFQKPNPFP-MSIYENVAYGLRA---------------QG-IK----------------------DKKVLDEVVE 123 (249)
T ss_pred hheeEEecCCCcCc-ccHHHHHHhHHHh---------------cC-CC----------------------chHHHHHHHH
Confidence 4899999988765 8999998532100 00 00 0011223445
Q ss_pred HHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecC
Q 008750 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd 315 (555)
++++.+|+.. ...++++.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|++ .+.|||+|||+
T Consensus 124 ~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~ 203 (249)
T PRK14253 124 RSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHS 203 (249)
T ss_pred HHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 5566666532 345778899999999999999999999999999999999999999999988764 36899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||+|++|++|++. ..|..+++
T Consensus 204 ~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 231 (249)
T PRK14253 204 MQQARRISDRTAFFLMGELV-EHDDTQVI 231 (249)
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999975 45655443
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=336.05 Aligned_cols=191 Identities=28% Similarity=0.446 Sum_probs=159.6
Q ss_pred EEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEe-cccccCc
Q 008750 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS-QEFEVSM 174 (555)
Q Consensus 105 ~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~-Q~~~~~~ 174 (555)
+.|+.+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++ |++.+++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccchhhcccEEEEcCCccccCC
Confidence 55666789999999999999999999999999999999999999999999998753 2589997 5566767
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..|+.+|+..... +. .....+...++..+++.+|+. ...+
T Consensus 109 ~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~~gl~-~~~~ 148 (236)
T cd03267 109 DLPVIDSFYLLAA---------------IY------------------------DLPPARFKKRLDELSELLDLE-ELLD 148 (236)
T ss_pred CCcHHHHHHHHHH---------------Hc------------------------CCCHHHHHHHHHHHHHHcCCh-hHhc
Confidence 8899998742110 00 001112234566778888886 4568
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+||||||||++||+||+.+|++|||||||++||+.+++++.++|++ .+.|||+||||++++..+||+|++|+
T Consensus 149 ~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 228 (236)
T cd03267 149 TPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVID 228 (236)
T ss_pred CChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 88999999999999999999999999999999999999999999998753 37899999999999999999999999
Q ss_pred CCeEe
Q 008750 331 MGVSR 335 (555)
Q Consensus 331 ~G~~~ 335 (555)
+|++.
T Consensus 229 ~G~i~ 233 (236)
T cd03267 229 KGRLL 233 (236)
T ss_pred CCEEE
Confidence 99864
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=314.19 Aligned_cols=197 Identities=25% Similarity=0.368 Sum_probs=172.3
Q ss_pred ccEEEEeEEEEeCCce--eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEec
Q 008750 96 SGVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQ 168 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q 168 (555)
+++.+++++.+|++++ +|+|||++|.+||.++++|||||||||||++++|+.+|+.|+|.++|..+ .-|.|+|
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPgaergvVFQ 81 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGAERGVVFQ 81 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCccceeEec
Confidence 4578899999998876 99999999999999999999999999999999999999999999987643 4699999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
+..+.+.+++.+|+..+++- ..++.....+.+.+++..+|+
T Consensus 82 ~~~LlPWl~~~dNvafgL~l---------------------------------------~Gi~k~~R~~~a~q~l~~VgL 122 (259)
T COG4525 82 NEALLPWLNVIDNVAFGLQL---------------------------------------RGIEKAQRREIAHQMLALVGL 122 (259)
T ss_pred cCccchhhHHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHhCc
Confidence 99999999999998654310 112233345567888999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~d 324 (555)
.. ..++++.+|||||||||.|||||+.+|++|+||||+.+||.-+++.+.++| +..|+.+++||||++++.-+++
T Consensus 123 ~~-~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflat 201 (259)
T COG4525 123 EG-AEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLAT 201 (259)
T ss_pred cc-ccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhh
Confidence 74 458999999999999999999999999999999999999999888877765 5679999999999999999999
Q ss_pred eeEEecCC
Q 008750 325 KIVETEMG 332 (555)
Q Consensus 325 ri~~l~~G 332 (555)
++++|..|
T Consensus 202 rLvvlsp~ 209 (259)
T COG4525 202 RLVVLSPG 209 (259)
T ss_pred eeEEecCC
Confidence 99999854
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=330.77 Aligned_cols=197 Identities=26% Similarity=0.411 Sum_probs=167.3
Q ss_pred EEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 98 i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
|+++||++.|++ +.+|+|+||++++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 789999999964 679999999999999999999999999999999999999999999998753
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..++|++|++.+++..|+.+|+...... .. .....+...++.
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~---------------~~-----------------------~~~~~~~~~~~~ 123 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALEL---------------QP-----------------------NLSYQEARERAR 123 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHh---------------cc-----------------------CCCHHHHHHHHH
Confidence 2599999999887778999987532100 00 001122345677
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~ 316 (555)
++++.+|+. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||+
T Consensus 124 ~~l~~~~l~-~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~ 202 (220)
T TIGR02982 124 AMLEAVGLG-DHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN 202 (220)
T ss_pred HHHHHcCCh-hhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 889999995 566888999999999999999999999999999999999999999888887743 489999999999
Q ss_pred HHHHhhcceeEEecCCeE
Q 008750 317 AFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~ 334 (555)
+.. .+||+|++|++|++
T Consensus 203 ~~~-~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 203 RIL-DVADRIVHMEDGKL 219 (220)
T ss_pred HHH-hhCCEEEEEECCEE
Confidence 965 69999999999874
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=337.16 Aligned_cols=209 Identities=18% Similarity=0.264 Sum_probs=169.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc---------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM--------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~--------- 161 (555)
+.|+++||+++|++.++|+|+||+|.+||+++|+|+||||||||+|+|+|+++| ++|+|.++|.+.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 85 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININR 85 (259)
T ss_pred ceEEEEEEEEEECCeEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHh
Confidence 359999999999888899999999999999999999999999999999999985 489999987431
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.|+|++|++.+++ .|+.+|+...... .. ..........
T Consensus 86 ~~~~i~~v~q~~~l~~-~tv~enl~~~~~~---------------~~-----------------------~~~~~~~~~~ 126 (259)
T PRK14260 86 LRRQIGMVFQRPNPFP-MSIYENVAYGVRI---------------SA-----------------------KLPQADLDEI 126 (259)
T ss_pred hhhheEEEecccccCC-ccHHHHHHHHHHH---------------hc-----------------------CCCHHHHHHH
Confidence 5999999988765 8999998543110 00 0001112234
Q ss_pred HHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 239 VSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+.++++.+|+. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.+..++.++|++ .+.|||+||
T Consensus 127 ~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~t 206 (259)
T PRK14260 127 VESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVT 206 (259)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 55566666663 1345788899999999999999999999999999999999999999999988753 368999999
Q ss_pred cCHHHHHhhcceeEEec-----CCeEeeccCChHHH
Q 008750 314 HDRAFLDQLCTKIVETE-----MGVSRTYEGNYSQY 344 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~-----~G~~~~~~G~y~~~ 344 (555)
||++++..+||++++|+ +|+++ ..|+..++
T Consensus 207 H~~~~i~~~~d~i~~l~~~~~~~G~i~-~~~~~~~~ 241 (259)
T PRK14260 207 HNMQQATRVSDFTAFFSTDESRIGQMV-EFGVTTQI 241 (259)
T ss_pred CCHHHHHHhcCeEEEEeccCCCCceEE-EeCCHHHH
Confidence 99999999999999997 48764 55666554
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=335.89 Aligned_cols=215 Identities=20% Similarity=0.287 Sum_probs=172.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~----------- 161 (555)
+++|+++||++.|+++.+|+||||+|++||++||+|+||||||||+++|+|+ ++|++|+|.++|.+.
T Consensus 5 ~~~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 84 (252)
T CHL00131 5 KPILEIKNLHASVNENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHL 84 (252)
T ss_pred CceEEEEeEEEEeCCEEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhhee
Confidence 3469999999999888899999999999999999999999999999999998 589999999987431
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..|+.+++...+..... ... .. .........++.+
T Consensus 85 ~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~-----------~~~-~~--------------------~~~~~~~~~~~~~ 132 (252)
T CHL00131 85 GIFLAFQYPIEIPGVSNADFLRLAYNSKRK-----------FQG-LP--------------------ELDPLEFLEIINE 132 (252)
T ss_pred eEEEEeccccccccccHHHHHHHhhhhhhc-----------ccc-cc--------------------cccHHHHHHHHHH
Confidence 378999998887778888886432110000 000 00 0001122345677
Q ss_pred HhhhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
+++.+|+.....++.+. .|||||+|||+|||||+.+|+||||||||++||+.+++++.+.|++ .+.|||+||||++
T Consensus 133 ~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~ 212 (252)
T CHL00131 133 KLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212 (252)
T ss_pred HHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHH
Confidence 88999996445677776 5999999999999999999999999999999999999999988753 4899999999999
Q ss_pred HHHhh-cceeEEecCCeEeeccCChH
Q 008750 318 FLDQL-CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 318 ~l~~~-~dri~~l~~G~~~~~~G~y~ 342 (555)
++..+ ||+|++|++|++. +.|+.+
T Consensus 213 ~~~~~~~d~i~~l~~G~i~-~~~~~~ 237 (252)
T CHL00131 213 LLDYIKPDYVHVMQNGKII-KTGDAE 237 (252)
T ss_pred HHHhhhCCEEEEEeCCEEE-EecChh
Confidence 99887 8999999999874 556544
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=336.70 Aligned_cols=213 Identities=17% Similarity=0.290 Sum_probs=174.0
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC------CC-------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SN------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g------~~------- 160 (555)
..++|.++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++| .+
T Consensus 7 ~~~~i~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 7 AEDVFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred hhhheeeeeEEEecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 45679999999999999999999999999999999999999999999999999999997766554 22
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++..|+.+|+...... .. .....+...
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~---------------~~-----------------------~~~~~~~~~ 128 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKS---------------HG-----------------------IKEKREIKK 128 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHh---------------cC-----------------------CCCHHHHHH
Confidence 2589999999887788999998532100 00 000112234
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+.. ...++.+..||||||||++|||||+.+|++|||||||++||+.++.++.+.|.+ .+.|||+|
T Consensus 129 ~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilv 208 (257)
T PRK14246 129 IVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIV 208 (257)
T ss_pred HHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEE
Confidence 5667777788742 345778899999999999999999999999999999999999999999998854 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||++++|++|++.. .|..+++.
T Consensus 209 sh~~~~~~~~~d~v~~l~~g~i~~-~g~~~~~~ 240 (257)
T PRK14246 209 SHNPQQVARVADYVAFLYNGELVE-WGSSNEIF 240 (257)
T ss_pred ECCHHHHHHhCCEEEEEECCEEEE-ECCHHHHH
Confidence 999999999999999999998754 45544443
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-41 Score=335.33 Aligned_cols=208 Identities=19% Similarity=0.304 Sum_probs=169.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-----------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM----------- 161 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~----------- 161 (555)
-+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 6 ~~~~~l~~~~~~~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 85 (251)
T PRK14244 6 ASVKNLNLWYGSKQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLR 85 (251)
T ss_pred EEeeeEEEEECCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHh
Confidence 478999999988889999999999999999999999999999999999986 4799999987431
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.++|++|++.+++ .|+.+|+..... ..... .........+.
T Consensus 86 ~~i~~v~q~~~~~~-~tv~~ni~~~~~---------------~~~~~----------------------~~~~~~~~~~~ 127 (251)
T PRK14244 86 AKVGMVFQKPNPFP-KSIYDNVAYGPK---------------LHGLA----------------------KNKKKLDEIVE 127 (251)
T ss_pred hhEEEEecCccccc-CCHHHHHHHHHH---------------hcCCC----------------------CCHHHHHHHHH
Confidence 4899999987765 499998753210 00000 00011233466
Q ss_pred HHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecC
Q 008750 241 KLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd 315 (555)
++++.+|+.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||+||||
T Consensus 128 ~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~ 207 (251)
T PRK14244 128 KSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHS 207 (251)
T ss_pred HHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 7788888853 235678899999999999999999999999999999999999999999888753 37899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++.++||+|++|++|++. +.|..+++
T Consensus 208 ~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 235 (251)
T PRK14244 208 MKQAKKVSDRVAFFQSGRIV-EYNTTQEI 235 (251)
T ss_pred HHHHHhhcCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999874 45665544
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=330.87 Aligned_cols=191 Identities=29% Similarity=0.490 Sum_probs=154.7
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGY 82 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEE
Confidence 899999999975 579999999999999999999999999999999999999999999998853 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++ .|+.+|+....... ....+.++++.
T Consensus 83 ~~q~~~~~~-~tv~e~l~~~~~~~---------------------------------------------~~~~~~~~l~~ 116 (220)
T cd03245 83 VPQDVTLFY-GTLRDNITLGAPLA---------------------------------------------DDERILRAAEL 116 (220)
T ss_pred eCCCCcccc-chHHHHhhcCCCCC---------------------------------------------CHHHHHHHHHH
Confidence 999987754 69999875321000 00011112222
Q ss_pred cCCCc----------cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEe
Q 008750 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIIS 313 (555)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiS 313 (555)
+++.. ......+.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|++. +.|||+||
T Consensus 117 ~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~s 196 (220)
T cd03245 117 AGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIIT 196 (220)
T ss_pred cCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 22211 0123446799999999999999999999999999999999999999999988642 47999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
||++++ .+||+|++|++|++.
T Consensus 197 H~~~~~-~~~d~v~~l~~g~i~ 217 (220)
T cd03245 197 HRPSLL-DLVDRIIVMDSGRIV 217 (220)
T ss_pred CCHHHH-HhCCEEEEEeCCeEe
Confidence 999987 699999999999874
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=337.52 Aligned_cols=211 Identities=20% Similarity=0.291 Sum_probs=171.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~--------- 160 (555)
.++|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 23 ~~~l~~~nl~~~~~~~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~ 102 (272)
T PRK14236 23 QTALEVRNLNLFYGDKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVA 102 (272)
T ss_pred CcEEEEEEEEEEECCeeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHH
Confidence 457999999999988889999999999999999999999999999999999987 489999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++. |+.+|+...... .. . ........
T Consensus 103 ~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~ 143 (272)
T PRK14236 103 ELRRRVGMVFQRPNPFPK-SIYENVVYGLRL---------------QG-I----------------------NNRRVLDE 143 (272)
T ss_pred HHhccEEEEecCCccCcc-cHHHHHHHHHHh---------------cC-C----------------------CcHHHHHH
Confidence 258999999877654 999998532100 00 0 00001123
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+++.. ...++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.++|.+ .+.|+|+|
T Consensus 144 ~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiiv 223 (272)
T PRK14236 144 AVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIV 223 (272)
T ss_pred HHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEE
Confidence 4555666667642 245778899999999999999999999999999999999999999999988753 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||+|++|++|++. ..|..+++.
T Consensus 224 tH~~~~~~~~~d~i~~l~~G~i~-~~g~~~~~~ 255 (272)
T PRK14236 224 THNMQQAARVSDYTAFMYMGKLV-EYGDTDTLF 255 (272)
T ss_pred eCCHHHHHhhCCEEEEEECCEEE-ecCCHHHHh
Confidence 99999999999999999999974 557666554
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=372.73 Aligned_cols=255 Identities=22% Similarity=0.285 Sum_probs=185.7
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
++......+..++.+..+.+++++....+..... .. . .......|+++||+|+|++ .++|+|+||+|++||++
T Consensus 297 pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~--~~-~---~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~i 370 (592)
T PRK10790 297 PLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG--ND-D---RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFV 370 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC--CC-c---cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEE
Confidence 4444444455666777777776665433211100 00 0 0112345999999999964 57999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
||||+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ |+.|+++|+...-. .. .
T Consensus 371 aIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~l-F~~Ti~~NI~~~~~--~~----d 443 (592)
T PRK10790 371 ALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVV-LADTFLANVTLGRD--IS----E 443 (592)
T ss_pred EEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCcc-ccchHHHHHHhCCC--CC----H
Confidence 99999999999999999999999999999998643 59999999988 66799999965310 00 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++.+.++ ...+.+.+.++-+ |++... ......||||||||++|||||+.
T Consensus 444 ~~i~~a~~---------------------------~~gl~~~i~~lp~--Gldt~i-~e~g~~LSGGqrQRialARaLl~ 493 (592)
T PRK10790 444 EQVWQALE---------------------------TVQLAELARSLPD--GLYTPL-GEQGNNLSVGQKQLLALARVLVQ 493 (592)
T ss_pred HHHHHHHH---------------------------HcCcHHHHHhccc--cccccc-cCCCCCCCHHHHHHHHHHHHHHh
Confidence 00000000 0011122222211 333222 22345799999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+|+||||||||++||+++.+.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++.++.
T Consensus 494 ~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~-~~G~~~~L~~~ 564 (592)
T PRK10790 494 TPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAV-EQGTHQQLLAA 564 (592)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EEcCHHHHHhC
Confidence 9999999999999999999999988864 4799999999999987 59999999999974 57888887654
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=333.98 Aligned_cols=210 Identities=22% Similarity=0.284 Sum_probs=169.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--C---CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--P---DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p---~~G~I~~~g~~--------- 160 (555)
.++|+++||++.|+++.+|+|+||+|.+||+++|+|+||||||||+++|+|+.+ | ++|+|.++|.+
T Consensus 4 ~~~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 83 (253)
T PRK14261 4 EIILSTKNLNLWYGEKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83 (253)
T ss_pred cceEEEeeeEEEECCeeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchh
Confidence 457999999999998889999999999999999999999999999999999975 3 48999998743
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++ .||.+|+...... .. .......+.
T Consensus 84 ~~~~~i~~~~q~~~~~~-~tv~eni~~~~~~---------------~~-----------------------~~~~~~~~~ 124 (253)
T PRK14261 84 ALRRKIGMVFQRPNPFP-KSIYENVAYGPRI---------------HG-----------------------EKNKKTLDT 124 (253)
T ss_pred hhhceEEEEecCCccCc-ccHHHHHHhhHHh---------------cC-----------------------CCCHHHHHH
Confidence 24899999988765 5999998532100 00 000011233
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
.+.++++.+++.. ...++.+.+||||||||++|||||+.+|++|||||||++||+.+++++.++|.+ .+.|||++
T Consensus 125 ~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~ 204 (253)
T PRK14261 125 IVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIV 204 (253)
T ss_pred HHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEE
Confidence 4555666666532 235788899999999999999999999999999999999999999999888753 36899999
Q ss_pred ecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 313 SHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||++++..+||+|++|++|++. ..|...++
T Consensus 205 sh~~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 235 (253)
T PRK14261 205 THNMQQAARVSDYTGFMYLGKLI-EFDKTTQI 235 (253)
T ss_pred EcCHHHHHhhCCEEEEEECCEEE-EcCCHHHH
Confidence 99999999999999999999974 45665544
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-41 Score=353.98 Aligned_cols=262 Identities=25% Similarity=0.342 Sum_probs=191.5
Q ss_pred hhhhhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEEC
Q 008750 44 RITCQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKK 122 (555)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~ 122 (555)
...-++-..-..|+..+.+.+..+.++...+.+............ ....+..++++|+++.|++ +++++|+||++++
T Consensus 269 Eff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~--~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~ 346 (559)
T COG4988 269 EFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEV--ANEPPIEISLENLSFRYPDGKPALSDLNLTIKA 346 (559)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCcccccc--ccCCCceeeecceEEecCCCCcccCCceeEecC
Confidence 334456666677777888888888877776655432211111000 1112233556699999965 4899999999999
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (555)
|+++||||+||||||||+++|+|+.+|++|+|.++|.+. +++||+|+|.+ +..|++||+..+-...
T Consensus 347 g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~l-f~gTireNi~l~~~~~--- 422 (559)
T COG4988 347 GQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDA--- 422 (559)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCcc-ccccHHHHhhccCCcC---
Confidence 999999999999999999999999999999999998652 59999999988 7789999996542100
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh-cCCCccccCCCCCCCChHHHHHHHHH
Q 008750 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE-LGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
..+++.+.++. ..+.+.++. -|++... ...-..|||||+|||+||
T Consensus 423 --s~e~i~~al~~-------------------------------a~l~~~v~~p~GLdt~i-ge~G~~LSgGQ~QRlaLA 468 (559)
T COG4988 423 --SDEEIIAALDQ-------------------------------AGLLEFVPKPDGLDTVI-GEGGAGLSGGQAQRLALA 468 (559)
T ss_pred --CHHHHHHHHHH-------------------------------hcHHHhhcCCCcccchh-ccCCCCCCHHHHHHHHHH
Confidence 00001011100 011111221 2443222 223357999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+.+++++||||||+|||.++++.+.+.|.+ .++|+|+||||++.+.. ||+|++|++|++ ...|++++..+.
T Consensus 469 RAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~-~D~I~vld~G~l-~~~g~~~~L~~~ 544 (559)
T COG4988 469 RALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAAD-ADRIVVLDNGRL-VEQGTHEELSEK 544 (559)
T ss_pred HHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhc-CCEEEEecCCce-eccCCHHHHhhc
Confidence 999999999999999999999999999998754 57999999999999976 999999999997 567888776554
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=335.92 Aligned_cols=209 Identities=18% Similarity=0.272 Sum_probs=166.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~-------- 161 (555)
.++|+++||+++|++.++|+|+||+|++||+++|+|+||||||||+++|+|++. |++|+|.++|.+.
T Consensus 8 ~~~l~i~~v~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 87 (264)
T PRK14243 8 ETVLRTENLNVYYGSFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPV 87 (264)
T ss_pred ceEEEEeeeEEEECCEEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChH
Confidence 357999999999988889999999999999999999999999999999999986 4899999987432
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.++|++|++.+++ .|+.+|+....... . . .....+
T Consensus 88 ~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~---------------~------------------------~-~~~~~~ 126 (264)
T PRK14243 88 EVRRRIGMVFQKPNPFP-KSIYDNIAYGARIN---------------G------------------------Y-KGDMDE 126 (264)
T ss_pred HHhhhEEEEccCCcccc-ccHHHHHHhhhhhc---------------C------------------------c-chHHHH
Confidence 4999999987755 59999985421100 0 0 000112
Q ss_pred HHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++..+++.+++.. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|.+ .+.|||+|
T Consensus 127 ~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~v 206 (264)
T PRK14243 127 LVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIV 206 (264)
T ss_pred HHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEE
Confidence 2333344444421 234678899999999999999999999999999999999999999999998753 35899999
Q ss_pred ecCHHHHHhhcceeEEec---------CCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~---------~G~~~~~~G~y~~~~ 345 (555)
|||++++.++||+|++|+ +|+++ ..|...++.
T Consensus 207 tH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~-~~~~~~~~~ 247 (264)
T PRK14243 207 THNMQQAARVSDMTAFFNVELTEGGGRYGYLV-EFDRTEKIF 247 (264)
T ss_pred ecCHHHHHHhCCEEEEEecccccccccCceEE-EeCCHHHHH
Confidence 999999999999999998 68764 556655543
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=334.04 Aligned_cols=210 Identities=20% Similarity=0.262 Sum_probs=171.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-----ceEEEEcCCC----------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-----SGNVIKAKSN---------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-----~G~I~~~g~~---------- 160 (555)
+.|+++||+++|++..+|+|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.+
T Consensus 6 ~~l~~~nl~~~~~~~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~ 85 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNR 85 (261)
T ss_pred ceEEEeeEEEEeCCeeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHH
Confidence 3599999999998878999999999999999999999999999999999999985 8999988743
Q ss_pred --ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 161 --MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 161 --~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
..++|++|++.+++ .|+.||+...... .. . ....+..++
T Consensus 86 ~~~~i~~~~q~~~l~~-~tv~enl~~~~~~---------------~~-~----------------------~~~~~~~~~ 126 (261)
T PRK14258 86 LRRQVSMVHPKPNLFP-MSVYDNVAYGVKI---------------VG-W----------------------RPKLEIDDI 126 (261)
T ss_pred hhccEEEEecCCccCc-ccHHHHHHHHHHh---------------cC-C----------------------CcHHHHHHH
Confidence 14999999987765 8999987532100 00 0 000112234
Q ss_pred HHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEE
Q 008750 239 VSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVI 311 (555)
Q Consensus 239 ~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIi 311 (555)
+.++++.+|+.. ...++++.+|||||+||++|||+|+.+|++|||||||++||+.++..+.++|++ .+.|||+
T Consensus 127 ~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiii 206 (261)
T PRK14258 127 VESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVI 206 (261)
T ss_pred HHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 566777777632 245788899999999999999999999999999999999999999999888753 4899999
Q ss_pred EecCHHHHHhhcceeEEecC-----CeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~-----G~~~~~~G~y~~~~ 345 (555)
||||++++..+||+|++|++ |++ ++.|...++.
T Consensus 207 vsH~~~~i~~~~d~i~~l~~~~~~~G~i-~~~~~~~~~~ 244 (261)
T PRK14258 207 VSHNLHQVSRLSDFTAFFKGNENRIGQL-VEFGLTKKIF 244 (261)
T ss_pred EECCHHHHHHhcCEEEEEccCCCcCceE-EEeCCHHHHH
Confidence 99999999999999999999 886 4557666543
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=338.68 Aligned_cols=374 Identities=26% Similarity=0.356 Sum_probs=235.7
Q ss_pred eEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc-HH
Q 008750 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT-VR 179 (555)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t-v~ 179 (555)
++..+|+.. ..|-.+- ..++|.++||+|+||-||||-+|+|+|.+.|.=|.-. +.+.. ++..-.|..| ++
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~--~pp~w-----deVi~~FrGtELq 150 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE--DPPSW-----DEVIKRFRGTELQ 150 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC--CCCCH-----HHHHHHhhhhHHH
Confidence 467788632 1222221 3568999999999999999999999999999876431 11000 0000011111 11
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHH----HHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD----EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
++|...+...... ....+.+..+.. ....+... .+-.-..+++.+.++|. ...+|
T Consensus 151 ~YF~~l~~g~~r~--------------v~K~QYVd~iPk~~KG~v~elLk~------~de~g~~devve~l~L~-nvl~r 209 (591)
T COG1245 151 NYFKKLYEGELRA--------------VHKPQYVDLIPKVVKGKVGELLKK------VDERGKFDEVVERLGLE-NVLDR 209 (591)
T ss_pred HHHHHHHcCCcce--------------ecchHHHHHHHHHhcchHHHHHHh------hhhcCcHHHHHHHhcch-hhhhh
Confidence 1221111111000 000111110000 00001110 01112567788889996 56799
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEec--
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETE-- 330 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~-- 330 (555)
.+++|||||.||++||.++++++|++++|||||.||...+-...+.++ +.+++||+|.||+..++.++|-|.++-
T Consensus 210 ~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~YG~ 289 (591)
T COG1245 210 DVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILYGE 289 (591)
T ss_pred hhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEecC
Confidence 999999999999999999999999999999999999977655554443 338999999999999999999888773
Q ss_pred CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccc
Q 008750 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQM 410 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 410 (555)
.|..-++.-+|+- ...|+.+-.+. +.++... +...++
T Consensus 290 pg~YGvvs~p~sv--------------------------r~gIN~yL~Gy--------------l~~EN~R---~R~~~I 326 (591)
T COG1245 290 PGVYGVVSKPKSV--------------------------RVGINEYLKGY--------------LPEENVR---FRPEEI 326 (591)
T ss_pred CccceEeccchHH--------------------------HHHHHHHHhcc--------------Cchhccc---ccccce
Confidence 3321112222211 11111111110 0011100 111223
Q ss_pred eeeccCCC-CCC-CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 411 KIRFPERG-RSG-RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 411 ~~~~~~~~-~~~-~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
.|...++. ... +.+++..++++.|++- -|.--.=+|+.||+|+++||||.||||++++|+|.++|++|. ..++
T Consensus 327 ~F~~~~~~~~~~~~~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~ 401 (591)
T COG1245 327 EFEEKPPRDDKARDTLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDL 401 (591)
T ss_pred eeeccCcccccccceeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cccc
Confidence 34333222 223 6788889999998852 344344578889999999999999999999999999999997 3467
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhccc-CcHH-HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAED-WRID-DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~-~~~~-~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++.|-||-.. -+.+-||.+.+...... +... --.+++..+.+. +.+++++..|||||.|||++|
T Consensus 402 ~vSyKPQyI~--~~~~gtV~~~l~~~~~~~~~~s~~~~ei~~pl~l~-~i~e~~v~~LSGGELQRvaIa 467 (591)
T COG1245 402 KVSYKPQYIS--PDYDGTVEDLLRSAIRSAFGSSYFKTEIVKPLNLE-DLLERPVDELSGGELQRVAIA 467 (591)
T ss_pred eEeecceeec--CCCCCcHHHHHHHhhhhhcccchhHHhhcCccchH-HHHhcccccCCchhHHHHHHH
Confidence 8889998753 44677999999877553 2222 234567778884 689999999999999999986
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=353.00 Aligned_cols=245 Identities=25% Similarity=0.373 Sum_probs=181.2
Q ss_pred HHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCc
Q 008750 57 KSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGA 134 (555)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGs 134 (555)
.+......+..|+-+.+.++++.... +.+ .+.... .++++||+|+|++. ++|+|+||++++||++||+|++||
T Consensus 301 ~~lgq~~~Sa~Rl~~i~~q~~e~~~~-~~~---~~~~~~-~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGs 375 (573)
T COG4987 301 QHLGQVIASARRLNDILDQKPEVTFP-DEQ---TATTGQ-ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGS 375 (573)
T ss_pred HHhhHHHHHHHHHhhhccCCcccCCC-ccc---cCCccc-eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCC
Confidence 44555556666666666555433221 110 111112 69999999999765 599999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH--HHHHHHHHHHHHHH
Q 008750 135 GKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE--EMEIAGKLERVQKA 202 (555)
Q Consensus 135 GKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~--~~~~~~~~~~~~~~ 202 (555)
|||||+++|+|.++|++|+|.++|.+. .|++++|.+.+ |..|+++|+..+-.+ ..+.. +.
T Consensus 376 GKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hl-F~~Tlr~NL~lA~~~AsDEel~-------~a 447 (573)
T COG4987 376 GKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHL-FSGTLRDNLRLANPDASDEELW-------AA 447 (573)
T ss_pred CHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHH-HHHHHHHHHhhcCCCCCHHHHH-------HH
Confidence 999999999999999999999998542 58999999888 788999999754321 11111 11
Q ss_pred HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 008750 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLl 282 (555)
++... +.. + ....++..+..+++ .-..|||||+||++|||+|+++.+++|
T Consensus 448 L~qvg-----L~~-------l--------~~~~p~gl~t~lge----------~G~~LSGGE~rRLAlAR~LL~dapl~l 497 (573)
T COG4987 448 LQQVG-----LEK-------L--------LESAPDGLNTWLGE----------GGRRLSGGERRRLALARALLHDAPLWL 497 (573)
T ss_pred HHHcC-----HHH-------H--------HHhChhhhhchhcc----------CCCcCCchHHHHHHHHHHHHcCCCeEE
Confidence 11000 000 0 00011122222222 235799999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 283 LDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 283 LDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
|||||.|||+.+.+.+.+.+.+ .|+|+|+|||++..++ .||||++|++|++ +.+|+|.+...
T Consensus 498 LDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gki-ie~G~~~~Ll~ 561 (573)
T COG4987 498 LDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKI-IEEGTHAELLA 561 (573)
T ss_pred ecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCee-eecCCHHhhhc
Confidence 9999999999999999998754 5999999999999997 4999999999997 56899988765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=378.95 Aligned_cols=257 Identities=21% Similarity=0.331 Sum_probs=186.3
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
.+......+.+.+.+..+.+++++..+.+...... .... .....+.|+++||+|+|++ +++|+|+||+|++||
T Consensus 433 ~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~-~~~~---~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge 508 (711)
T TIGR00958 433 AVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLT-GTLA---PLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGE 508 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC-CCCC---CCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCC
Confidence 44455555566777888888877664333211110 0000 0122346999999999964 469999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
+++|||+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+..+.....
T Consensus 509 ~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-F~gTIreNI~~g~~~~~---- 583 (711)
T TIGR00958 509 VVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVL-FSGSVRENIAYGLTDTP---- 583 (711)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccc-cccCHHHHHhcCCCCCC----
Confidence 9999999999999999999999999999999998653 59999999987 67899999975421000
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
.+++.+.++ .. .+...+.++-+ |++... .....+||||||||++|||||
T Consensus 584 -~e~i~~al~------------------------~a---~l~~~i~~lp~--GldT~i-ge~G~~LSGGQkQRlalARAL 632 (711)
T TIGR00958 584 -DEEIMAAAK------------------------AA---NAHDFIMEFPN--GYDTEV-GEKGSQLSGGQKQRIAIARAL 632 (711)
T ss_pred -HHHHHHHHH------------------------Hc---CCHHHHHhCCC--ccCCcc-cCCCCcCCHHHHHHHHHHHHH
Confidence 000001111 00 11111111111 343222 223458999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++|+|||||||||+||+++.+.+.+.....++|+|+|||+++.+. .||+|++|++|++ ...|++++.++
T Consensus 633 l~~p~ILILDEpTSaLD~~te~~i~~~~~~~~~TvIiItHrl~~i~-~aD~IivL~~G~i-ve~Gt~~eL~~ 702 (711)
T TIGR00958 633 VRKPRVLILDEATSALDAECEQLLQESRSRASRTVLLIAHRLSTVE-RADQILVLKKGSV-VEMGTHKQLME 702 (711)
T ss_pred hcCCCEEEEEccccccCHHHHHHHHHhhccCCCeEEEEeccHHHHH-hCCEEEEEECCEE-EEeeCHHHHHh
Confidence 9999999999999999999999998844446899999999999986 5999999999987 45688877654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=335.99 Aligned_cols=210 Identities=19% Similarity=0.252 Sum_probs=167.3
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC--------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN-------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~-------- 160 (555)
.+++|+++||+++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 17 ~~~~l~~~nl~~~~~~~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 17 DHSVFEVEGVKVFYGGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred CCceEEEeeEEEEeCCeEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 34579999999999888899999999999999999999999999999999999863 68999998743
Q ss_pred ----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 ----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..|+|++|++.++. .|+.+|+...... .. . ....+
T Consensus 97 ~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~---------------~~-~------------------------~~~~~ 135 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFP-KSIYENIAFAPRA---------------NG-Y------------------------KGNLD 135 (274)
T ss_pred HHHhhcEEEEccCCcccc-ccHHHHHHhHHHh---------------cC-c------------------------hHHHH
Confidence 25899999987754 5999988532100 00 0 00001
Q ss_pred HHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 237 AKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 237 ~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
..+..+++.+++. ....++++.+|||||+|||+|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||+
T Consensus 136 ~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii 215 (274)
T PRK14265 136 ELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIM 215 (274)
T ss_pred HHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEE
Confidence 1223334444442 1245678899999999999999999999999999999999999999999998864 3689999
Q ss_pred EecCHHHHHhhcceeEEec---------CCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETE---------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~---------~G~~~~~~G~y~~~~ 345 (555)
||||++++..+||++++|+ +|++ +..|...++.
T Consensus 216 ~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~-~~~g~~~~~~ 257 (274)
T PRK14265 216 VTHNMQQASRVADWTAFFNTEIDEYGKRRGKL-VEFSPTEQMF 257 (274)
T ss_pred EeCCHHHHHHhCCEEEEEecccccccccCceE-EEeCCHHHHH
Confidence 9999999999999999997 7876 4557665543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=315.84 Aligned_cols=160 Identities=36% Similarity=0.579 Sum_probs=146.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|++++|++.++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEPEEVKRRIGYLPE 80 (173)
T ss_pred CEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccchHhhhccEEEEec
Confidence 478999999988889999999999999999999999999999999999999999999998753 25899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+
T Consensus 81 ~~~~~~~~tv~~~~------------------------------------------------------------------ 94 (173)
T cd03230 81 EPSLYENLTVRENL------------------------------------------------------------------ 94 (173)
T ss_pred CCccccCCcHHHHh------------------------------------------------------------------
Confidence 98877777886653
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
.|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .|.|+|++|||++++..+||+
T Consensus 95 ----------~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~ 164 (173)
T cd03230 95 ----------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDR 164 (173)
T ss_pred ----------hcCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCE
Confidence 0999999999999999999999999999999999999999988753 478999999999999999999
Q ss_pred eEEecCCe
Q 008750 326 IVETEMGV 333 (555)
Q Consensus 326 i~~l~~G~ 333 (555)
+++|++|+
T Consensus 165 i~~l~~g~ 172 (173)
T cd03230 165 VAILNNGR 172 (173)
T ss_pred EEEEeCCC
Confidence 99999885
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=330.07 Aligned_cols=209 Identities=26% Similarity=0.396 Sum_probs=163.7
Q ss_pred cEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
.|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 3899999999975 579999999999999999999999999999999999999999999998743 24999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++. .|+.+|+........ ...+...++ ...+..+++.
T Consensus 82 ~~q~~~~~~-~tv~~~~~~~~~~~~-----~~~~~~~~~-------------------------------~~~l~~~~~~ 124 (229)
T cd03254 82 VLQDTFLFS-GTIMENIRLGRPNAT-----DEEVIEAAK-------------------------------EAGAHDFIMK 124 (229)
T ss_pred ecCCchhhh-hHHHHHHhccCCCCC-----HHHHHHHHH-------------------------------HhChHHHHHh
Confidence 999987654 499998754211000 000000000 0011222333
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ |+.. ..++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+|||+++++.
T Consensus 125 ~~~~~~~-~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~- 202 (229)
T cd03254 125 LPNGYDT-VLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK- 202 (229)
T ss_pred CcccccC-HhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-
Confidence 3 4432 34667889999999999999999999999999999999999999999888754 4789999999999996
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+++++.
T Consensus 203 ~~d~i~~l~~g~~~-~~~~~~~~~ 225 (229)
T cd03254 203 NADKILVLDDGKII-EEGTHDELL 225 (229)
T ss_pred hCCEEEEEeCCeEE-EeCCHHHHH
Confidence 59999999999974 567766554
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-41 Score=337.51 Aligned_cols=210 Identities=22% Similarity=0.353 Sum_probs=168.3
Q ss_pred cEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEec
Q 008750 97 GVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~Q 168 (555)
.|+++||+++|+ ++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~i~~v~q 85 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAYVPQ 85 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHhhccceEEEecc
Confidence 489999999995 5789999999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccC--cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 169 EFEVS--MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 169 ~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
++.+. +..++.+++........ .. . .........++.++++.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~~~~~--------------~~------~---------------~~~~~~~~~~~~~~l~~~ 130 (272)
T PRK15056 86 SEEVDWSFPVLVEDVVMMGRYGHM--------------GW------L---------------RRAKKRDRQIVTAALARV 130 (272)
T ss_pred ccccccCCCcchhhheeccccccc--------------cc------c---------------cCCCHHHHHHHHHHHHHc
Confidence 97653 23456666532100000 00 0 000011234566778889
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
|+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++++.++|++ .|.|||+||||++++..+|
T Consensus 131 gl~-~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~ 209 (272)
T PRK15056 131 DMV-EFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFC 209 (272)
T ss_pred CCh-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 986 456889999999999999999999999999999999999999999999988753 4889999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~ 344 (555)
|+++++ +|++. +.|..++.
T Consensus 210 d~v~~~-~G~i~-~~g~~~~~ 228 (272)
T PRK15056 210 DYTVMV-KGTVL-ASGPTETT 228 (272)
T ss_pred CEEEEE-CCEEE-eecCHHhc
Confidence 999887 78863 55665543
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=369.40 Aligned_cols=254 Identities=26% Similarity=0.405 Sum_probs=193.5
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~ 125 (555)
..+......+...+.+..+.+++++..++++........ .......|+++||+|+|+ ++++|+|+||+|++||+
T Consensus 283 ~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-----~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~ 357 (567)
T COG1132 283 TPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP-----LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEK 357 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC-----CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCE
Confidence 345555555666778888888888877664321111110 112334599999999998 57899999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH----HHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (555)
+||||+||||||||+++|+|+++|++|+|.+||.+. .|+||+|++.+ |+.||++|+..+..+ ++.
T Consensus 358 vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~L-F~~TI~~NI~~g~~~at~eei~ 436 (567)
T COG1132 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLL-FSGTIRENIALGRPDATDEEIE 436 (567)
T ss_pred EEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEccccee-ecccHHHHHhcCCCCCCHHHHH
Confidence 999999999999999999999999999999988653 59999999988 569999999765321 111
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH
Q 008750 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
.+.+.. .+...+..+.+ |++.... .....||||||||++||
T Consensus 437 ~a~k~a------------------------------------~~~d~I~~lp~--g~dt~vg-e~G~~LSgGQrQrlaiA 477 (567)
T COG1132 437 EALKLA------------------------------------NAHEFIANLPD--GYDTIVG-ERGVNLSGGQRQRLAIA 477 (567)
T ss_pred HHHHHh------------------------------------ChHHHHHhCcc--cccceec-CCCccCCHHHHHHHHHH
Confidence 111100 11112222211 4443332 23358999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+.+|++||||||||+||..++..+.+.+.+ .++|+|+|+|+++.+.. ||+|++|++|++ ...|++++.+..
T Consensus 478 Rall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i-~e~G~h~eLl~~ 553 (567)
T COG1132 478 RALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRI-VERGTHEELLAK 553 (567)
T ss_pred HHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEE-EEecCHHHHHHc
Confidence 999999999999999999999999999988752 56799999999999987 999999999995 667898887764
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=378.76 Aligned_cols=259 Identities=22% Similarity=0.337 Sum_probs=184.2
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~ 126 (555)
++......+.+.+.+..+++++.+....+.+......... .....+.|+++||+|+|+ ++++|+|+||+|++|+++
T Consensus 427 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~~~~~~---~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~v 503 (708)
T TIGR01193 427 PLENIINLQPKLQAARVANNRLNEVYLVDSEFINKKKRTE---LNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKT 503 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccccC---CCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEE
Confidence 4444444455566666666665544322211110000000 112234599999999996 467999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
||||+||||||||+++|+|+++|++|+|.++|.+. .||||+|++.+ |+.|++||+..+...... .
T Consensus 504 aIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~l-f~gTI~eNi~l~~~~~~~----~ 578 (708)
T TIGR01193 504 TIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYI-FSGSILENLLLGAKENVS----Q 578 (708)
T ss_pred EEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCcee-hhHHHHHHHhccCCCCCC----H
Confidence 99999999999999999999999999999998653 69999999987 678999999753100000 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++.+.+.. ..+.+.+..+- .|++... ......||||||||++|||||+.
T Consensus 579 ~~i~~a~~~---------------------------a~l~~~i~~lp--~gldt~i-~e~G~~LSgGQrQRialARall~ 628 (708)
T TIGR01193 579 DEIWAACEI---------------------------AEIKDDIENMP--LGYQTEL-SEEGSSISGGQKQRIALARALLT 628 (708)
T ss_pred HHHHHHHHH---------------------------hCCHHHHHhcc--cccCcEe-cCCCCCCCHHHHHHHHHHHHHhh
Confidence 000000100 01111122111 1333222 22346899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC-CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~-~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|++|||||||++||+.+++.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|++++.+.
T Consensus 629 ~p~iliLDE~Ts~LD~~te~~i~~~L~~~~~~T~IiitHr~~~~~-~~D~i~~l~~G~i-~~~G~~~~L~~ 697 (708)
T TIGR01193 629 DSKVLILDESTSNLDTITEKKIVNNLLNLQDKTIIFVAHRLSVAK-QSDKIIVLDHGKI-IEQGSHDELLD 697 (708)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCEEEEEecchHHHH-cCCEEEEEECCEE-EEECCHHHHHh
Confidence 9999999999999999999999988865 4789999999999985 6999999999997 46788877654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=330.20 Aligned_cols=208 Identities=27% Similarity=0.437 Sum_probs=165.1
Q ss_pred EEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|++++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999765 79999999999999999999999999999999999999999999998843 24999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..|+.||+....... . . ..+.... ....+.++++.
T Consensus 81 ~~q~~~~~-~~tv~enl~~~~~~~-~-~---~~~~~~~-------------------------------~~~~~~~~~~~ 123 (234)
T cd03251 81 VSQDVFLF-NDTVAENIAYGRPGA-T-R---EEVEEAA-------------------------------RAANAHEFIME 123 (234)
T ss_pred eCCCCeec-cccHHHHhhccCCCC-C-H---HHHHHHH-------------------------------HHcCcHHHHHh
Confidence 99998775 479999985431100 0 0 0000000 00012333444
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ |+. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|||++|||++++..
T Consensus 124 l~~~l~-~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 202 (234)
T cd03251 124 LPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN 202 (234)
T ss_pred cccCcc-eeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh
Confidence 4 454 345677899999999999999999999999999999999999999999988854 48899999999999976
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. ..|+..++.
T Consensus 203 -~d~v~~l~~G~i~-~~~~~~~~~ 224 (234)
T cd03251 203 -ADRIVVLEDGKIV-ERGTHEELL 224 (234)
T ss_pred -CCEEEEecCCeEe-eeCCHHHHH
Confidence 9999999999874 567665543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=366.16 Aligned_cols=209 Identities=31% Similarity=0.446 Sum_probs=174.8
Q ss_pred CccEEEEeEEEEeC-----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-CC---------
Q 008750 95 SSGVKLENISKSYK-----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-KS--------- 159 (555)
Q Consensus 95 ~~~i~l~nls~~y~-----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-g~--------- 159 (555)
.++|+++||+++|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++ |.
T Consensus 277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~ 356 (520)
T TIGR03269 277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPG 356 (520)
T ss_pred CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccc
Confidence 45799999999994 2579999999999999999999999999999999999999999999995 42
Q ss_pred -------CceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 160 -------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 160 -------~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
..+|+|++|++.+++..||.+|+...+. + ....
T Consensus 357 ~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~-------------------------~~~~ 396 (520)
T TIGR03269 357 PDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIG---------------L-------------------------ELPD 396 (520)
T ss_pred hhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHH---------------c-------------------------CCCH
Confidence 1248999999888788899999853210 0 0000
Q ss_pred ccHHHHHHHHhhhcCCCc----cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----C
Q 008750 233 DTLDAKVSKLMPELGFTA----DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----K 304 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~----~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~ 304 (555)
.....++.++++.+|+.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.++|+ +
T Consensus 397 ~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~ 476 (520)
T TIGR03269 397 ELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREE 476 (520)
T ss_pred HHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHH
Confidence 112345677889999964 25689999999999999999999999999999999999999999999998874 3
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
.|.|||+||||++++..+||+|++|++|++. +.|...+.
T Consensus 477 ~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~g~~~~~ 515 (520)
T TIGR03269 477 MEQTFIIVSHDMDFVLDVCDRAALMRDGKIV-KIGDPEEI 515 (520)
T ss_pred cCcEEEEEeCCHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 5899999999999999999999999999874 45665443
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.55 Aligned_cols=258 Identities=21% Similarity=0.358 Sum_probs=182.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+.+.+.+..+.+++.+....+.+... ..... ......|+++||+|+|++ +++|+|+||+|++|++
T Consensus 297 pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~--~~~~~---~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 371 (582)
T PRK11176 297 PLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE--GKRVI---ERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKT 371 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC--CCcCC---CCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCE
Confidence 3344444445566666666665554332211110 00000 012235999999999964 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ |+.|+++|+..+..+...
T Consensus 372 ~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~~~---- 446 (582)
T PRK11176 372 VALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHL-FNDTIANNIAYARTEQYS---- 446 (582)
T ss_pred EEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCcee-ecchHHHHHhcCCCCCCC----
Confidence 999999999999999999999999999999998652 59999999887 678999999753110000
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
-+++...++. ..+.+.+..+- -|++....+ .-.+||||||||++|||||+
T Consensus 447 ~~~i~~al~~---------------------------~~l~~~i~~lp--~Gldt~ig~-~g~~LSGGqrQRi~LARall 496 (582)
T PRK11176 447 REQIEEAARM---------------------------AYAMDFINKMD--NGLDTVIGE-NGVLLSGGQRQRIAIARALL 496 (582)
T ss_pred HHHHHHHHHH---------------------------hCcHHHHHhcc--cccCceeCC-CCCcCCHHHHHHHHHHHHHH
Confidence 0000000000 01111122211 134332222 23579999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
.+|++||||||||+||+.+...+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++. ..|++++..+.
T Consensus 497 ~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~-~~D~Ii~l~~g~i~-e~g~~~~l~~~ 568 (582)
T PRK11176 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-KADEILVVEDGEIV-ERGTHAELLAQ 568 (582)
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-EeCCHHHHHhC
Confidence 99999999999999999999999988864 4799999999999986 59999999999874 56888777654
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=330.04 Aligned_cols=208 Identities=25% Similarity=0.423 Sum_probs=163.8
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++||+++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999963 579999999999999999999999999999999999999999999999853 24999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..||.+|+...... .. ...+...+ . ...+.+++..
T Consensus 81 ~~q~~~~~-~~tv~~nl~~~~~~-~~----~~~~~~~~------------------------~-------~~~~~~~l~~ 123 (237)
T cd03252 81 VLQENVLF-NRSIRDNIALADPG-MS----MERVIEAA------------------------K-------LAGAHDFISE 123 (237)
T ss_pred EcCCchhc-cchHHHHhhccCCC-CC----HHHHHHHH------------------------H-------HcCcHHHHHh
Confidence 99998764 57999998542110 00 00000000 0 0012233444
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ ++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 l~~~~~-~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~- 201 (237)
T cd03252 124 LPEGYD-TIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK- 201 (237)
T ss_pred Cccccc-chhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-
Confidence 4 443 235678899999999999999999999999999999999999999999988753 4789999999999996
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+..++.
T Consensus 202 ~~d~v~~l~~G~i~-~~~~~~~~~ 224 (237)
T cd03252 202 NADRIIVMEKGRIV-EQGSHDELL 224 (237)
T ss_pred hCCEEEEEECCEEE-EEcCHHHHH
Confidence 59999999999874 557666554
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=345.23 Aligned_cols=253 Identities=24% Similarity=0.353 Sum_probs=185.8
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCce-eeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-VLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~~-vL~~vsl~i~~Ge~~ 126 (555)
++...-..+....++..+..+++.........+.. .++. ......|+++||+|+|+.++ +|++|||+|++||++
T Consensus 307 ~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i---~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekV 381 (591)
T KOG0057|consen 307 PLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPI---ELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKV 381 (591)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCc---ccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEE
Confidence 33344445566777777777777664433222221 0111 12334599999999998665 999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
||||+|||||||++|+|.+++. ++|+|.++|.++ .||||||+..+ |+.||..|+..+-... ..
T Consensus 382 aIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~L-FndTIl~NI~YGn~sa-----s~ 454 (591)
T KOG0057|consen 382 AIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVL-FNDTILYNIKYGNPSA-----SD 454 (591)
T ss_pred EEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccc-cchhHHHHhhcCCCCc-----CH
Confidence 9999999999999999999999 999999999764 49999999877 8899999997542110 00
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
+++.+.+ ...+ +.+....+ |......+| ...|||||||||+||||+
T Consensus 455 eeV~e~~------------------------k~a~-------~hd~i~~l~~GY~T~VGer-G~~LSGGekQrvslaRa~ 502 (591)
T KOG0057|consen 455 EEVVEAC------------------------KRAG-------LHDVISRLPDGYQTLVGER-GLMLSGGEKQRVSLARAF 502 (591)
T ss_pred HHHHHHH------------------------HHcC-------cHHHHHhccccchhhHhhc-ccccccchHHHHHHHHHH
Confidence 0000111 1111 11111222 222212222 247999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+.+|+|++||||||+||.+++..+.+++.+ .++|+|+|-||+..+.+ ||+|+++++|++.. .|+.++++.
T Consensus 503 lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~-~DkI~~l~nG~v~e-~gth~ell~ 574 (591)
T KOG0057|consen 503 LKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKD-FDKIIVLDNGTVKE-YGTHSELLA 574 (591)
T ss_pred hcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhc-CCEEEEEECCeeEE-eccHHHHhh
Confidence 999999999999999999999999998865 58999999999999986 99999999999755 477777665
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=376.66 Aligned_cols=258 Identities=24% Similarity=0.375 Sum_probs=184.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++.....-+.+++.+..+++++.+....+.+....... .......+.|+++||+|+|++ +++|+|+||+|++||+
T Consensus 417 p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~~~~~~---~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~ 493 (694)
T TIGR03375 417 PLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRF---LHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEK 493 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCC---CCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCE
Confidence 44445555556666666666665544332211110000 000122345999999999964 4699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+...-.+ ..
T Consensus 494 iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~l-f~~TI~eNi~~~~~~-~~---- 567 (694)
T TIGR03375 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRL-FYGTLRDNIALGAPY-AD---- 567 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhh-hhhhHHHHHhCCCCC-CC----
Confidence 999999999999999999999999999999998642 69999999987 678999999643110 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++.+.+. ...+...+..+. .|++.... .....||||||||++|||||+
T Consensus 568 ~~~i~~a~~---------------------------~~~l~~~i~~lp--~gl~T~i~-e~G~~LSgGQrQRlalARall 617 (694)
T TIGR03375 568 DEEILRAAE---------------------------LAGVTEFVRRHP--DGLDMQIG-ERGRSLSGGQRQAVALARALL 617 (694)
T ss_pred HHHHHHHHH---------------------------HcChHHHHHhCc--ccccceec-CCCCCCCHHHHHHHHHHHHHh
Confidence 000001110 001111122211 14433322 234589999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++||||||||+||+.+++.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|+++ ..|+++++..
T Consensus 618 ~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~-~~D~iivl~~G~i~-e~G~~~eLl~ 688 (694)
T TIGR03375 618 RDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD-LVDRIIVMDNGRIV-ADGPKDQVLE 688 (694)
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 99999999999999999999999998864 4799999999999985 69999999999974 5688776653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=368.16 Aligned_cols=250 Identities=25% Similarity=0.370 Sum_probs=180.2
Q ss_pred hHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCC
Q 008750 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVN 132 (555)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~N 132 (555)
.+...+.+..+.+++.+....+++........ .....+.|+++||+|+|++ +++|+|+||+|++|+++||||+|
T Consensus 300 ~~~~~~~~~~s~~ri~~ll~~~~~~~~~~~~~----~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~s 375 (574)
T PRK11160 300 AFQHLGQVIASARRINEITEQKPEVTFPTTST----AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRT 375 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCCCcccC----CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCC
Confidence 34455666666666665543322111000000 0112346999999999964 46999999999999999999999
Q ss_pred CccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHH
Q 008750 133 GAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA 202 (555)
Q Consensus 133 GsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~ 202 (555)
|||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+..+..+. ..+++...
T Consensus 376 GsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~ti~~Ni~~~~~~~-----~~~~i~~a 449 (574)
T PRK11160 376 GCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL-FSATLRDNLLLAAPNA-----SDEALIEV 449 (574)
T ss_pred CCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchh-hcccHHHHhhcCCCcc-----CHHHHHHH
Confidence 99999999999999999999999998653 49999999987 5689999986432100 00000001
Q ss_pred HhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEE
Q 008750 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLL 282 (555)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLl 282 (555)
++ .. .+...+.. .-|++... ......||||||||++|||||+.+|++||
T Consensus 450 l~------------------------~~---~l~~~i~~---p~GldT~v-ge~g~~LSgGqrqRialARall~~~~ili 498 (574)
T PRK11160 450 LQ------------------------QV---GLEKLLED---DKGLNAWL-GEGGRQLSGGEQRRLGIARALLHDAPLLL 498 (574)
T ss_pred HH------------------------Hc---CCHHHHcC---ccccCchh-cCCCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 10 00 01111111 11333222 22356899999999999999999999999
Q ss_pred EcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 283 LDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 283 LDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||++||+.+++.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++. ..|++++.+..
T Consensus 499 lDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~-~d~i~~l~~G~i~-~~g~~~~l~~~ 563 (574)
T PRK11160 499 LDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQ-FDRICVMDNGQII-EQGTHQELLAQ 563 (574)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHh-CCEEEEEeCCeEE-EeCCHHHHHhc
Confidence 9999999999999999998864 48999999999999965 9999999999974 56888776543
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-41 Score=329.98 Aligned_cols=189 Identities=29% Similarity=0.405 Sum_probs=158.3
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEecccccCcCccHHHHHHHhhH
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMSAFK 187 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q~~~~~~~~tv~e~~~~~~~ 187 (555)
|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+. ..+|++|++.+++..||.+|+.....
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~~l~~~~tv~e~l~~~~~ 80 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVFQNYSLLPWLTVRENIALAVD 80 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhheEEecCcccCCCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999999999999987542 35899999988788899999854210
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHH
Q 008750 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (555)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (555)
.. .. .........++.++++.+|+. ...++++.+||||||||
T Consensus 81 ~~-------------~~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qr 122 (230)
T TIGR01184 81 RV-------------LP------------------------DLSKSERRAIVEEHIALVGLT-EAADKRPGQLSGGMKQR 122 (230)
T ss_pred hc-------------cc------------------------CCCHHHHHHHHHHHHHHcCCH-HHHcCChhhCCHHHHHH
Confidence 00 00 001112234567788899996 46688899999999999
Q ss_pred HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCC
Q 008750 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGN 340 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~ 340 (555)
++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||++++..+||+|++|++|++. ..|+
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~-~~~~ 198 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAA-NIGQ 198 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEe-cccC
Confidence 9999999999999999999999999999999988753 4889999999999999999999999999875 3443
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=315.40 Aligned_cols=162 Identities=39% Similarity=0.585 Sum_probs=146.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC------------ceEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------~~ig~ 165 (555)
|+++|++++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGM 80 (178)
T ss_pred CEEEEEEEEECCeEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEE
Confidence 478999999988889999999999999999999999999999999999999999999998742 25899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..|+.+|+.
T Consensus 81 ~~q~~~~~~~~t~~~~l~-------------------------------------------------------------- 98 (178)
T cd03229 81 VFQDFALFPHLTVLENIA-------------------------------------------------------------- 98 (178)
T ss_pred EecCCccCCCCCHHHhee--------------------------------------------------------------
Confidence 999988777778877641
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~ 321 (555)
+ .|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ . +.|+|+||||++++..
T Consensus 99 --~----------~lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 99 --L----------GLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred --e----------cCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 0 0999999999999999999999999999999999999999988753 3 7899999999999999
Q ss_pred hcceeEEecCCe
Q 008750 322 LCTKIVETEMGV 333 (555)
Q Consensus 322 ~~dri~~l~~G~ 333 (555)
+||+|++|++|+
T Consensus 167 ~~d~i~~l~~g~ 178 (178)
T cd03229 167 LADRVVVLRDGK 178 (178)
T ss_pred hcCEEEEEeCCC
Confidence 999999998873
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=331.68 Aligned_cols=210 Identities=22% Similarity=0.335 Sum_probs=168.1
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCC---------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSN--------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~--------- 160 (555)
.+.|+++||+++|+++++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+
T Consensus 14 ~~~l~~~~l~~~~~~~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~ 93 (265)
T PRK14252 14 QQKSEVNKLNFYYGGYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVD 93 (265)
T ss_pred CceEEEEEEEEEECCeeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccC
Confidence 4569999999999888899999999999999999999999999999999999875 79999997632
Q ss_pred -----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
..++|++|++.+++. |+.+|+...... .. .. .....
T Consensus 94 ~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~---------------~~-~~----------------------~~~~~ 134 (265)
T PRK14252 94 PIEVRMRISMVFQKPNPFPK-SIFENVAYGLRI---------------RG-VK----------------------RRSIL 134 (265)
T ss_pred HHHHhccEEEEccCCcCCcc-hHHHHHHhHHHH---------------cC-CC----------------------hHHHH
Confidence 248999999887664 999998532110 00 00 00011
Q ss_pred HHHHHHHhhhcCCC---ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEE
Q 008750 236 DAKVSKLMPELGFT---ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (555)
Q Consensus 236 ~~~~~~~l~~lgl~---~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvI 310 (555)
++++..+++.+++. ....++.+.+|||||+|||+|||||+.+|++|||||||++||+.++.++.+.|++ .+.|||
T Consensus 135 ~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tii 214 (265)
T PRK14252 135 EERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTIL 214 (265)
T ss_pred HHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEE
Confidence 23344445555542 1244677899999999999999999999999999999999999999999988753 368999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+||||++++..+||+|++|++|++.. .|+..++
T Consensus 215 ivth~~~~~~~~~d~i~~l~~G~i~~-~g~~~~~ 247 (265)
T PRK14252 215 IVTHNMQQAARVSDYTAYMYMGELIE-FGATDTI 247 (265)
T ss_pred EEecCHHHHHHhCCEEEEEECCEEEE-eCCHHHH
Confidence 99999999999999999999999854 4555443
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=322.96 Aligned_cols=189 Identities=21% Similarity=0.318 Sum_probs=162.6
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEEEEecc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIAFLSQE 169 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig~v~Q~ 169 (555)
+|+++||++.|+++.+|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 58999999999888899999999999999999999999999999999999999999999988542 48999998
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++..|+.+|+..... . .+ ..+.++.++++.+|+.
T Consensus 82 ~~~~~~~tv~~~l~~~~~---------------~--------------------------~~--~~~~~~~~~l~~~~l~ 118 (207)
T PRK13539 82 NAMKPALTVAENLEFWAA---------------F--------------------------LG--GEELDIAAALEAVGLA 118 (207)
T ss_pred CcCCCCCcHHHHHHHHHH---------------h--------------------------cC--CcHHHHHHHHHHcCCH
Confidence 877778899998742110 0 00 0123467788889986
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
. ..++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+||||++++.. |++
T Consensus 119 ~-~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~ 195 (207)
T PRK13539 119 P-LAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARE 195 (207)
T ss_pred H-HHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcE
Confidence 4 56888999999999999999999999999999999999999999999888753 48999999999999986 999
Q ss_pred EEecC
Q 008750 327 VETEM 331 (555)
Q Consensus 327 ~~l~~ 331 (555)
+.++.
T Consensus 196 ~~~~~ 200 (207)
T PRK13539 196 LDLGP 200 (207)
T ss_pred EeecC
Confidence 88754
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=327.20 Aligned_cols=196 Identities=29% Similarity=0.388 Sum_probs=162.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
+.++|+++.|+++++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++.+...+++..|
T Consensus 23 l~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~--~~~~~~~~~~~~~t 100 (224)
T cd03220 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVS--SLLGLGGGFNPELT 100 (224)
T ss_pred hhhhhhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEc--hhhcccccCCCCCc
Confidence 7889999999999999999999999999999999999999999999999999999999997542 22222344556789
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
|.+|+...... . .........++.++++.+|+. ...++++
T Consensus 101 v~enl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 140 (224)
T cd03220 101 GRENIYLNGRL---------------L------------------------GLSRKEIDEKIDEIIEFSELG-DFIDLPV 140 (224)
T ss_pred HHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCCh-hhhhCCh
Confidence 99987532100 0 000111233566777888885 4568889
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|.+ .+.|||+||||++++..+||+|++|++|++
T Consensus 141 ~~LSgG~~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 220 (224)
T cd03220 141 KTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKI 220 (224)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999888887643 478999999999999999999999999986
Q ss_pred e
Q 008750 335 R 335 (555)
Q Consensus 335 ~ 335 (555)
.
T Consensus 221 ~ 221 (224)
T cd03220 221 R 221 (224)
T ss_pred E
Confidence 4
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=340.21 Aligned_cols=212 Identities=21% Similarity=0.322 Sum_probs=169.3
Q ss_pred CCccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc-----
Q 008750 94 ISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM----- 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~----- 161 (555)
....|+++|++++|. ..++|+||||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 77 ~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~ 156 (329)
T PRK14257 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI 156 (329)
T ss_pred cCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence 446799999999995 3579999999999999999999999999999999999986 5799999988642
Q ss_pred -------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 162 -------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 162 -------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.++|+||++.++ ..|+++|+...... .. ..+ ...
T Consensus 157 ~~~~lr~~i~~v~q~~~~~-~~ti~eNi~~~~~~---------------~~-~~~----------------------~~~ 197 (329)
T PRK14257 157 SSLELRTRIGMVFQKPTPF-EMSIFDNVAYGPRN---------------NG-IND----------------------RKI 197 (329)
T ss_pred chHhhhccEEEEecCCccC-CCcHHHHHHhHHHh---------------cC-CCh----------------------HHH
Confidence 599999998874 68999998632100 00 000 000
Q ss_pred HHHHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceE
Q 008750 235 LDAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM 309 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tv 309 (555)
.++.+..+++.+++.. ...++++.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|++ .+.|+
T Consensus 198 ~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Ti 277 (329)
T PRK14257 198 LEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSI 277 (329)
T ss_pred HHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEE
Confidence 1222344455555421 234677889999999999999999999999999999999999999999888753 36899
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+|||+++++.++||||++|++|++. ..|.+.+..
T Consensus 278 i~iTH~l~~i~~~~Driivl~~G~i~-e~g~~~~l~ 312 (329)
T PRK14257 278 IIVTHSMAQAQRISDETVFFYQGWIE-EAGETKTIF 312 (329)
T ss_pred EEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 99999999999999999999999975 457766643
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=326.45 Aligned_cols=201 Identities=22% Similarity=0.433 Sum_probs=162.0
Q ss_pred CCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 94 ISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
..++|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~ 87 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLH 87 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHH
Confidence 3466999999999974 369999999999999999999999999999999999999999999999854
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..++|++|++.++ ..||.+|+....... .. .+ +... .....+.
T Consensus 88 ~~i~~~~q~~~l~-~~tv~~nl~~~~~~~-------------------~~-------~~---~~~~-------~~~~~~~ 130 (226)
T cd03248 88 SKVSLVGQEPVLF-ARSLQDNIAYGLQSC-------------------SF-------EC---VKEA-------AQKAHAH 130 (226)
T ss_pred hhEEEEecccHHH-hhhHHHHhccccCCC-------------------CH-------HH---HHHH-------HHHcCcH
Confidence 2599999998764 469999875322100 00 00 0000 0011234
Q ss_pred HHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCH
Q 008750 241 KLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~ 316 (555)
++++.+ |+.. ..++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+||||+
T Consensus 131 ~~l~~l~~gl~~-~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~ 209 (226)
T cd03248 131 SFISELASGYDT-EVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRL 209 (226)
T ss_pred HHHHhccccccc-hhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCH
Confidence 456666 6653 45778999999999999999999999999999999999999999999988753 368999999999
Q ss_pred HHHHhhcceeEEecCCe
Q 008750 317 AFLDQLCTKIVETEMGV 333 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~ 333 (555)
+++.. ||+|++|++|+
T Consensus 210 ~~~~~-~d~i~~l~~g~ 225 (226)
T cd03248 210 STVER-ADQILVLDGGR 225 (226)
T ss_pred HHHHh-CCEEEEecCCc
Confidence 99964 99999999885
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=310.22 Aligned_cols=163 Identities=26% Similarity=0.443 Sum_probs=147.0
Q ss_pred EEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 98 i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
|+++|++++|+ ++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++. ..++|++|++.+ +..
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-~~i~~~~q~~~~-~~~ 78 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-EDLLFLPQRPYL-PLG 78 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-ceEEEECCCCcc-ccc
Confidence 47899999996 467999999999999999999999999999999999999999999999864 579999999875 467
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
|+.+|+.. + .
T Consensus 79 tv~~nl~~--------------------------------------------------------------~--------~ 88 (166)
T cd03223 79 TLREQLIY--------------------------------------------------------------P--------W 88 (166)
T ss_pred cHHHHhhc--------------------------------------------------------------c--------C
Confidence 88887621 0 2
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
+.+||||||||++|||||+.+|++|||||||++||+.+.+++.+.+++.+.|+|++|||++++ .+||+|++|+++.
T Consensus 89 ~~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 89 DDVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHhCCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 468999999999999999999999999999999999999999999988889999999999876 5899999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=367.46 Aligned_cols=258 Identities=21% Similarity=0.342 Sum_probs=182.3
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
++......+...+.+...++++.+....+.+......... .....+.|+++||+|+|++ .++|+|+||+|++|+++
T Consensus 288 ~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~---~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v 364 (588)
T PRK13657 288 RLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPGAID---LGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTV 364 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCCCCC---cCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEE
Confidence 3334444445566666777766665433211100000000 0112345999999999975 57999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|+||++.+ |+.|++||+..+-.+. . -
T Consensus 365 ~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~-~----d 438 (588)
T PRK13657 365 AIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGL-FNRSIEDNIRVGRPDA-T----D 438 (588)
T ss_pred EEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCccc-ccccHHHHHhcCCCCC-C----H
Confidence 9999999999999999999999999999999854 269999999987 6789999997531100 0 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++...+.. ..+...+..+- .|++... ......||||||||++|||||+.
T Consensus 439 ~~i~~al~~---------------------------~~l~~~i~~lp--~gldt~i-~~~g~~LSgGq~QRialARall~ 488 (588)
T PRK13657 439 EEMRAAAER---------------------------AQAHDFIERKP--DGYDTVV-GERGRQLSGGERQRLAIARALLK 488 (588)
T ss_pred HHHHHHHHH---------------------------hCHHHHHHhCc--ccccchh-cCCCCCCCHHHHHHHHHHHHHhc
Confidence 000000000 01111111111 1333222 22345799999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|++|||||||++||+.+.+.+.+.|.+ .++|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 489 ~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~-~~D~ii~l~~G~i~-~~g~~~~l~~ 558 (588)
T PRK13657 489 DPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR-NADRILVFDNGRVV-ESGSFDELVA 558 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHH-hCCEEEEEECCEEE-EeCCHHHHHH
Confidence 9999999999999999999999988764 4799999999999985 59999999999975 4677776654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=320.78 Aligned_cols=185 Identities=21% Similarity=0.331 Sum_probs=159.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+|+++||+++|++.++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+. .++|++
T Consensus 1 ml~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~ 80 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVG 80 (200)
T ss_pred CEEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEec
Confidence 37899999999888899999999999999999999999999999999999999999999998542 589999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++..||.+|+..... .. ..+.++.++++.++
T Consensus 81 q~~~~~~~~tv~~~~~~~~~------------------------------------------~~--~~~~~~~~~l~~~~ 116 (200)
T PRK13540 81 HRSGINPYLTLRENCLYDIH------------------------------------------FS--PGAVGITELCRLFS 116 (200)
T ss_pred cccccCcCCCHHHHHHHHHh------------------------------------------cC--cchHHHHHHHHHcC
Confidence 99888788999998753210 00 01234667788888
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|+|+|||+.+++.. ||
T Consensus 117 l~-~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~-~d 194 (200)
T PRK13540 117 LE-HLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK-AD 194 (200)
T ss_pred Cc-hhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc-cc
Confidence 86 355788899999999999999999999999999999999999999999998863 58899999999999975 88
Q ss_pred eeE
Q 008750 325 KIV 327 (555)
Q Consensus 325 ri~ 327 (555)
.-+
T Consensus 195 ~~~ 197 (200)
T PRK13540 195 YEE 197 (200)
T ss_pred hhh
Confidence 654
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-40 Score=336.63 Aligned_cols=224 Identities=20% Similarity=0.300 Sum_probs=174.0
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCC-------
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSN------- 160 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~------- 160 (555)
..+++|.++||+++|+++++|+++||+|.+||+++|+|+||||||||+++|+|+++ |++|+|.++|.+
T Consensus 41 ~~~~~l~i~nl~~~~~~~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 41 DGDAKLSVEDLDVYYGDDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred CCCceEEEEEEEEEeCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 34567999999999988889999999999999999999999999999999999986 689999998742
Q ss_pred -----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC-ccc
Q 008750 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LDT 234 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 234 (555)
..++|++|++.++. .||.+|+......... ... ...... .... ...
T Consensus 121 ~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~-----------~~~-----~~~~~~-----------~~~~~~~~ 172 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFP-KSIRENISYGPRKHGD-----------INT-----GLLARL-----------LGRDDKDA 172 (305)
T ss_pred HHHHhhceEEEccCCcccc-ccHHHHHHhHHhhccc-----------ccc-----cccccc-----------cccCchHH
Confidence 25899999987654 5999998643210000 000 000000 0000 011
Q ss_pred HHHHHHHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceE
Q 008750 235 LDAKVSKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPM 309 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tv 309 (555)
....+.++++.+++.. ...++++.+|||||+|||+|||||+.+|+||||||||++||+.++..+.++|++. +.||
T Consensus 173 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~ti 252 (305)
T PRK14264 173 EDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTV 252 (305)
T ss_pred HHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEE
Confidence 2345677777787742 3457888999999999999999999999999999999999999999999988642 5899
Q ss_pred EEEecCHHHHHhhccee-EEecCCeEeeccCChHHHH
Q 008750 310 VIISHDRAFLDQLCTKI-VETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri-~~l~~G~~~~~~G~y~~~~ 345 (555)
||||||++++..+||++ ++|++|++. ..|+.+++.
T Consensus 253 iivtH~~~~i~~~~d~i~~~l~~G~i~-~~g~~~~~~ 288 (305)
T PRK14264 253 VVVTHNMQQAARISDQTAVFLTGGELV-EYDDTDKIF 288 (305)
T ss_pred EEEEcCHHHHHHhcCEEEEEecCCEEE-EeCCHHHHH
Confidence 99999999999999997 577999874 457766543
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=327.96 Aligned_cols=209 Identities=19% Similarity=0.330 Sum_probs=170.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-----CCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-----PDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-----p~~G~I~~~g~~~---------- 161 (555)
.|+++||++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+.. |++|+|.++|.+.
T Consensus 3 ~l~~~~v~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~ 82 (250)
T PRK14266 3 RIEVENLNTYFDDAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVEL 82 (250)
T ss_pred EEEEEeEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHH
Confidence 4899999999988889999999999999999999999999999999999864 4899999988432
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++|++|++.++. .|+.+|+...+... . .......+.++
T Consensus 83 ~~~i~~~~q~~~~~~-~t~~~nl~~~~~~~---------------~-----------------------~~~~~~~~~~~ 123 (250)
T PRK14266 83 RKKVGMVFQKPNPFP-KSIFDNVAYGLRIH---------------G-----------------------EDDEDFIEERV 123 (250)
T ss_pred hhheEEEecCCccCc-chHHHHHHhHHhhc---------------C-----------------------CCCHHHHHHHH
Confidence 4999999987765 59999885331100 0 00001123445
Q ss_pred HHHhhhcCCCc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEec
Q 008750 240 SKLMPELGFTA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSH 314 (555)
.++++.+|+.. ...++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+|||
T Consensus 124 ~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh 203 (250)
T PRK14266 124 EESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTH 203 (250)
T ss_pred HHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEC
Confidence 56666666632 234778899999999999999999999999999999999999999999988753 4789999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|++++..+||+|++|++|++. +.|+.+++.
T Consensus 204 ~~~~~~~~~~~i~~l~~G~i~-~~g~~~~~~ 233 (250)
T PRK14266 204 NMQQATRVSKYTSFFLNGEII-ESGLTDQIF 233 (250)
T ss_pred CHHHHHhhcCEEEEEECCeEE-EeCCHHHHH
Confidence 999999999999999999874 567766553
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=320.35 Aligned_cols=185 Identities=25% Similarity=0.364 Sum_probs=157.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEec
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLSQ 168 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~Q 168 (555)
|+++|+++.|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 478999999998899999999999999999999999999999999999999999999998854 35899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+..... . .. .. +..+.++++.+|+
T Consensus 81 ~~~~~~~~tv~~~l~~~~~---------------~--------------------------~~-~~-~~~~~~~l~~~~l 117 (198)
T TIGR01189 81 LPGLKPELSALENLHFWAA---------------I--------------------------HG-GA-QRTIEDALAAVGL 117 (198)
T ss_pred CcccccCCcHHHHHHHHHH---------------H--------------------------cC-Cc-HHHHHHHHHHcCC
Confidence 9888777899998743110 0 00 01 2346677888888
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcce
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dr 325 (555)
. ...++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.+.|.+ .|.|+|+||||...+ .|++
T Consensus 118 ~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~ 194 (198)
T TIGR01189 118 T-GFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEAR 194 (198)
T ss_pred H-HHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceE
Confidence 6 456888999999999999999999999999999999999999999999988753 488999999998666 4687
Q ss_pred eEE
Q 008750 326 IVE 328 (555)
Q Consensus 326 i~~ 328 (555)
++.
T Consensus 195 ~~~ 197 (198)
T TIGR01189 195 ELR 197 (198)
T ss_pred Eee
Confidence 765
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=327.59 Aligned_cols=208 Identities=24% Similarity=0.400 Sum_probs=161.9
Q ss_pred EEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEE
Q 008750 98 VKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIA 164 (555)
Q Consensus 98 i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig 164 (555)
|+++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 478999999964 469999999999999999999999999999999999999999999998843 2499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.++ ..||.+|+........ ...+.... ... .+.+++.
T Consensus 81 ~~~q~~~~~-~~tv~e~l~~~~~~~~-----~~~~~~~~---------------------------~~~----~~~~~~~ 123 (238)
T cd03249 81 LVSQEPVLF-DGTIAENIRYGKPDAT-----DEEVEEAA---------------------------KKA----NIHDFIM 123 (238)
T ss_pred EECCchhhh-hhhHHHHhhccCCCCC-----HHHHHHHH---------------------------HHc----ChHHHHH
Confidence 999998765 4699999854211000 00000000 000 0112222
Q ss_pred hc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
.+ |+. ...++.+.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||++|||++++.
T Consensus 124 ~l~~~~~-~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~ 202 (238)
T cd03249 124 SLPDGYD-TLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202 (238)
T ss_pred hhccccc-eeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh
Confidence 22 332 234677899999999999999999999999999999999999999999998753 5789999999999997
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++ .+.|+..++.
T Consensus 203 -~~d~v~~l~~G~i-~~~~~~~~~~ 225 (238)
T cd03249 203 -NADLIAVLQNGQV-VEQGTHDELM 225 (238)
T ss_pred -hCCEEEEEECCEE-EEeCCHHHHh
Confidence 8999999999987 4556655443
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=325.05 Aligned_cols=202 Identities=28% Similarity=0.347 Sum_probs=166.2
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCC-------ce
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSN-------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~-------~~ 162 (555)
.+.++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+ ..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~ 82 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC 82 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence 3679999999964 579999999999999999999999999999999999999 999999998853 25
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH-
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK- 241 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 241 (555)
++|++|++.+++..||.+|+....... ... .........++..
T Consensus 83 i~~~~q~~~~~~~~tv~enl~~~~~~~-------------~~~-----------------------~~~~~~~~~~~~~~ 126 (226)
T cd03234 83 VAYVRQDDILLPGLTVRETLTYTAILR-------------LPR-----------------------KSSDAIRKKRVEDV 126 (226)
T ss_pred EEEeCCCCccCcCCcHHHHHHHHHHhh-------------ccc-----------------------ccchHHHHHHHHHH
Confidence 999999998888889999985321100 000 0000001122334
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCH-H
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDR-A 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~-~ 317 (555)
+++.+++. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.++..+.+++++ .+.|+|++||++ .
T Consensus 127 ~l~~~~l~-~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~ 205 (226)
T cd03234 127 LLRDLALT-RIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRS 205 (226)
T ss_pred HHHhhcch-hhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCH
Confidence 67778875 455788999999999999999999999999999999999999999999888753 478999999998 6
Q ss_pred HHHhhcceeEEecCCeEe
Q 008750 318 FLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~ 335 (555)
.+..+||+|++|++|++.
T Consensus 206 ~~~~~~d~i~~l~~G~i~ 223 (226)
T cd03234 206 DLFRLFDRILLLSSGEIV 223 (226)
T ss_pred HHHHhCCEEEEEeCCEEE
Confidence 888999999999999874
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=324.78 Aligned_cols=180 Identities=26% Similarity=0.442 Sum_probs=157.0
Q ss_pred ccEEEEeEEEEeCC---------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEE
Q 008750 96 SGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFL 166 (555)
Q Consensus 96 ~~i~l~nls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v 166 (555)
++++++|+++.|+- ..+++||||+|++||++||||+||||||||.|+|+|+++|++|+|.++|.+..
T Consensus 3 ~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~---- 78 (268)
T COG4608 3 PLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDIT---- 78 (268)
T ss_pred ceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchh----
Confidence 56899999999942 36999999999999999999999999999999999999999999999986521
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
.++ ..+..+++.++|+.+
T Consensus 79 --------~~~------------------------------------------------------~~~~~~~v~elL~~V 96 (268)
T COG4608 79 --------KLS------------------------------------------------------KEERRERVLELLEKV 96 (268)
T ss_pred --------hcc------------------------------------------------------hhHHHHHHHHHHHHh
Confidence 000 012245678889999
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
|++.+.++|+|++|||||+||++|||||+.+|+++++|||||+||+..+..+.++|. +.|.|++|||||++.+..+
T Consensus 97 gl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~i 176 (268)
T COG4608 97 GLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYI 176 (268)
T ss_pred CCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhh
Confidence 999999999999999999999999999999999999999999999988888877764 4699999999999999999
Q ss_pred cceeEEecCCeEeeccCChH
Q 008750 323 CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~ 342 (555)
||||++|..|+++.. |+-+
T Consensus 177 sdri~VMy~G~iVE~-g~~~ 195 (268)
T COG4608 177 SDRIAVMYLGKIVEI-GPTE 195 (268)
T ss_pred cccEEEEecCceeEe-cCHH
Confidence 999999999998654 4433
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=318.86 Aligned_cols=193 Identities=27% Similarity=0.380 Sum_probs=152.1
Q ss_pred EEEEeEEEEeCCc-----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 98 VKLENISKSYKGV-----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 98 i~l~nls~~y~~~-----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
|+++||+++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g---~i~~~~q~~~l 77 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG---SIAYVSQEPWI 77 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC---EEEEEecCchh
Confidence 4789999999753 699999999999999999999999999999999999999999999987 79999999987
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTA 250 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~ 250 (555)
+ ..|+.+|+........ .... .... .. .+ ...+..+ |+.
T Consensus 78 ~-~~t~~enl~~~~~~~~---~~~~---~~~~------------------------~~---~l----~~~~~~~~~~~~- 118 (204)
T cd03250 78 Q-NGTIRENILFGKPFDE---ERYE---KVIK------------------------AC---AL----EPDLEILPDGDL- 118 (204)
T ss_pred c-cCcHHHHhccCCCcCH---HHHH---HHHH------------------------Hc---Cc----HHHHHhccCccc-
Confidence 5 6799999864311000 0000 0000 00 00 0111111 232
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH-HHc---CCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLG---KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~-~l~---~~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++.+.+||||||||++|||||+.+|++|||||||++||+.+.+++.+ +++ +.+.|||++||+++++.. ||+|
T Consensus 119 ~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i 197 (204)
T cd03250 119 TEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQI 197 (204)
T ss_pred ceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEE
Confidence 23456688999999999999999999999999999999999999888876 343 347899999999999987 9999
Q ss_pred EEecCCe
Q 008750 327 VETEMGV 333 (555)
Q Consensus 327 ~~l~~G~ 333 (555)
++|++|+
T Consensus 198 ~~l~~G~ 204 (204)
T cd03250 198 VVLDNGR 204 (204)
T ss_pred EEEeCCC
Confidence 9999874
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=373.46 Aligned_cols=245 Identities=24% Similarity=0.398 Sum_probs=190.2
Q ss_pred HHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCCc---eeeeeeeEEEECCCEEEEEcCCCcc
Q 008750 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAG 135 (555)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsG 135 (555)
+.+|..+...+|..-+.+++...... .........+.|+++||+|+|+.+ ++|+|+||+|++|+.+|||||+|||
T Consensus 951 ~~ka~~Aa~~iF~i~dr~~~i~~~~~--~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsG 1028 (1228)
T KOG0055|consen 951 ISKAKIAAGSIFEILDRKPTIDPDST--SGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSG 1028 (1228)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCC--CCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCC
Confidence 56666666766666554432221110 000012345669999999999754 5999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHHHHHHHHHHH
Q 008750 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKLERVQK 201 (555)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~~~~~~ 201 (555)
|||.+.+|-..|.|++|.|.+||.++ +||.|.|+|.+ |+.|++||+..+. .+++..+++..+++.
T Consensus 1029 KSTvI~LLeRfYdp~~G~V~IDg~dik~lnl~~LR~~i~lVsQEP~L-F~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~ 1107 (1228)
T KOG0055|consen 1029 KSTVISLLERFYDPDAGKVKIDGVDIKDLNLKWLRKQIGLVSQEPVL-FNGTIRENIAYGSEEVSEEEIIEAAKLANAHN 1107 (1228)
T ss_pred HHHHHHHHHHhcCCCCCeEEECCcccccCCHHHHHHhcceeccCchh-hcccHHHHHhccCCCCCHHHHHHHHHHhhhHH
Confidence 99999999999999999999999764 59999999988 8899999998762 223333333333333
Q ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEE
Q 008750 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (555)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lL 281 (555)
++.+. -+ |++....+|. .+||||||||+|||||+++||+||
T Consensus 1108 FI~sL------------------------------------P~--GyDT~vGerG-~QLSGGQKQRIAIARAilRnPkIL 1148 (1228)
T KOG0055|consen 1108 FISSL------------------------------------PQ--GYDTRVGERG-VQLSGGQKQRIAIARAILRNPKIL 1148 (1228)
T ss_pred HHhcC------------------------------------cC--cccCccCccc-CcCCchHHHHHHHHHHHHcCCCee
Confidence 33221 11 4444444443 489999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 282 lLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
||||.||+||.++++.+.+.|.+ .|+|.|+|+|+++.+. .||.|+|+++|++ .-.|+.++.+..
T Consensus 1149 LLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~V-vE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1149 LLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ-NADVIAVLKNGKV-VEQGTHDELLAK 1214 (1228)
T ss_pred eeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh-cCCEEEEEECCEE-EecccHHHHHhC
Confidence 99999999999999999999965 6999999999999996 5999999999997 457888877653
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=332.42 Aligned_cols=199 Identities=22% Similarity=0.375 Sum_probs=159.9
Q ss_pred cEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.|+++||+++|+ +.++|+||||+|++||+++|+|+||||||||+++|+|+++ ++|+|.++|.+. .|+
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~ 80 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFG 80 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEE
Confidence 389999999994 4679999999999999999999999999999999999997 789999998542 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|+||++.++. .|+++|+..... . ...++.++++
T Consensus 81 ~v~q~~~lf~-~tv~~nl~~~~~--~--------------------------------------------~~~~~~~~l~ 113 (275)
T cd03289 81 VIPQKVFIFS-GTFRKNLDPYGK--W--------------------------------------------SDEEIWKVAE 113 (275)
T ss_pred EECCCcccch-hhHHHHhhhccC--C--------------------------------------------CHHHHHHHHH
Confidence 9999998854 699999742100 0 0011222233
Q ss_pred hcCCCccccCCCC-----------CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 245 ELGFTADDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 245 ~lgl~~~~~~~~~-----------~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
.+|+. ...++.+ ..||||||||++|||||+.+|+||||||||++||+.+...+.+.|++ .++|||+
T Consensus 114 ~~gL~-~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~ 192 (275)
T cd03289 114 EVGLK-SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVIL 192 (275)
T ss_pred HcCCH-HHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 33332 1223333 45999999999999999999999999999999999999999998864 4789999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||||++++.. ||||++|++|++. +.|...+...
T Consensus 193 isH~~~~i~~-~dri~vl~~G~i~-~~g~~~~l~~ 225 (275)
T cd03289 193 SEHRIEAMLE-CQRFLVIEENKVR-QYDSIQKLLN 225 (275)
T ss_pred EECCHHHHHh-CCEEEEecCCeEe-ecCCHHHHhh
Confidence 9999999975 9999999999985 4566666554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=327.37 Aligned_cols=209 Identities=19% Similarity=0.238 Sum_probs=170.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-----CceEEEEcCCCc--------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-----DSGNVIKAKSNM-------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-----~~G~I~~~g~~~-------- 161 (555)
++.+.+++++++|++.++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|.+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 85 (261)
T PRK14263 6 PIVMDCKLDKIFYGNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPV 85 (261)
T ss_pred CceEEEEeEEEEeCCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchH
Confidence 4568999999999988999999999999999999999999999999999999986 799999987532
Q ss_pred ----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 162 ----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 162 ----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
.++|++|++.++ ..|+.+|+...... . .. ......
T Consensus 86 ~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~---------------~------------------------~~-~~~~~~ 124 (261)
T PRK14263 86 VVRRYIGMVFQQPNPF-SMSIFDNVAFGLRL---------------N------------------------RY-KGDLGD 124 (261)
T ss_pred hhhhceEEEecCCccc-cccHHHHHHHHHhh---------------c------------------------Cc-hHHHHH
Confidence 489999998775 68999998532100 0 00 001123
Q ss_pred HHHHHhhhcCCCcc---ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEE
Q 008750 238 KVSKLMPELGFTAD---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVII 312 (555)
Q Consensus 238 ~~~~~l~~lgl~~~---~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIii 312 (555)
++.++++.+|+... ..++++.+|||||+||++|||||+.+|++|||||||++||+.++.++.++|++ .+.|+|+|
T Consensus 125 ~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~i 204 (261)
T PRK14263 125 RVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204 (261)
T ss_pred HHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEE
Confidence 45566667776421 33567889999999999999999999999999999999999999999998864 36899999
Q ss_pred ecCHHHHHhhcceeEEec--------CCeEeeccCChHHHH
Q 008750 313 SHDRAFLDQLCTKIVETE--------MGVSRTYEGNYSQYV 345 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~--------~G~~~~~~G~y~~~~ 345 (555)
|||++++..+||+|++|+ +|+++ ..|..+++.
T Consensus 205 sH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~-~~g~~~~~~ 244 (261)
T PRK14263 205 THNMQQAIRVADTTAFFSVDISQGTRTGYLV-EMGPTAQIF 244 (261)
T ss_pred eCCHHHHHHhCCEEEEEecccccccCCceEE-EeCCHHHHH
Confidence 999999999999999996 78764 456666554
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=363.78 Aligned_cols=212 Identities=22% Similarity=0.392 Sum_probs=175.4
Q ss_pred CccEEEEeEEEEeC-----------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---
Q 008750 95 SSGVKLENISKSYK-----------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~-----------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--- 160 (555)
.++|+++||++.|+ ++++|+||||+|++||++||+|+||||||||+|+|+|++ |++|+|.++|.+
T Consensus 273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~ 351 (529)
T PRK15134 273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHN 351 (529)
T ss_pred CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccc
Confidence 45799999999995 357999999999999999999999999999999999999 589999998742
Q ss_pred ----------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH
Q 008750 161 ----------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ 228 (555)
Q Consensus 161 ----------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (555)
..++|++|++. +++..||.+|+...... .. .
T Consensus 352 ~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~---------------~~----------------------~ 394 (529)
T PRK15134 352 LNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRV---------------HQ----------------------P 394 (529)
T ss_pred cchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHh---------------cc----------------------c
Confidence 24899999973 66678999998532100 00 0
Q ss_pred hcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----
Q 008750 229 AVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---- 304 (555)
Q Consensus 229 ~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---- 304 (555)
.........++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++
T Consensus 395 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~ 474 (529)
T PRK15134 395 TLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQK 474 (529)
T ss_pred cCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHh
Confidence 0011122456778899999964457899999999999999999999999999999999999999999999988752
Q ss_pred CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 305 QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 305 ~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.|.|||+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 475 ~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~-~~~~~~~~~ 514 (529)
T PRK15134 475 HQLAYLFISHDLHVVRALCHQVIVLRQGEVV-EQGDCERVF 514 (529)
T ss_pred hCCEEEEEeCCHHHHHHhcCeEEEEECCEEE-EEcCHHHHh
Confidence 4899999999999999999999999999874 566665543
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-40 Score=368.33 Aligned_cols=208 Identities=25% Similarity=0.440 Sum_probs=174.8
Q ss_pred CccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
.++|+++||++.|++ .++|+|+||+|.+|++++|+|+||||||||+|+|+|+++|++|+|.+++ ..+|||++|++.
T Consensus 506 ~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-~~~igyv~Q~~~-- 582 (718)
T PLN03073 506 PPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-KVRMAVFSQHHV-- 582 (718)
T ss_pred CceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-ceeEEEEecccc--
Confidence 467999999999964 5699999999999999999999999999999999999999999999875 457999999863
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
...++.++....+. . ... ...+.++..+|..+|+.....
T Consensus 583 ~~l~~~~~~~~~~~-------------------------------------~---~~~-~~~~~~i~~~L~~~gl~~~~~ 621 (718)
T PLN03073 583 DGLDLSSNPLLYMM-------------------------------------R---CFP-GVPEQKLRAHLGSFGVTGNLA 621 (718)
T ss_pred ccCCcchhHHHHHH-------------------------------------H---hcC-CCCHHHHHHHHHHCCCChHHh
Confidence 22344333211000 0 000 011345778899999975567
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
++++.+|||||||||+|||+|+.+|++|||||||||||+.+++++.+.|.+++.|||+||||+.++..+||+|++|++|+
T Consensus 622 ~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~~gtvIivSHd~~~i~~~~drv~~l~~G~ 701 (718)
T PLN03073 622 LQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLFQGGVLMVSHDEHLISGSVDELWVVSEGK 701 (718)
T ss_pred cCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 88999999999999999999999999999999999999999999999998766799999999999999999999999999
Q ss_pred EeeccCChHHHHH
Q 008750 334 SRTYEGNYSQYVL 346 (555)
Q Consensus 334 ~~~~~G~y~~~~~ 346 (555)
+..+.|+|++|..
T Consensus 702 i~~~~g~~~~~~~ 714 (718)
T PLN03073 702 VTPFHGTFHDYKK 714 (718)
T ss_pred EEEeCCCHHHHHH
Confidence 8778999988753
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=317.02 Aligned_cols=185 Identities=25% Similarity=0.372 Sum_probs=155.3
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceE
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~i 163 (555)
..|+++|++++|++ .++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 84 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSL 84 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhE
Confidence 45899999999975 479999999999999999999999999999999999999999999998853 259
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.++ ..|+.+|+..... . ....+.+.+
T Consensus 85 ~~v~q~~~~~-~~tv~~~l~~~~~-------------------~---------------------------~~~~~~~~l 117 (207)
T cd03369 85 TIIPQDPTLF-SGTIRSNLDPFDE-------------------Y---------------------------SDEEIYGAL 117 (207)
T ss_pred EEEecCCccc-CccHHHHhcccCC-------------------C---------------------------CHHHHHHHh
Confidence 9999998765 4699998732100 0 001111222
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ .++++.+|||||+||++|||||+.+|++|||||||++||+.++..+.++|++ .+.|+|++|||++++..
T Consensus 118 ~--------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 118 R--------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred h--------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh
Confidence 2 2456789999999999999999999999999999999999999999998864 37899999999999976
Q ss_pred hcceeEEecCCeEee
Q 008750 322 LCTKIVETEMGVSRT 336 (555)
Q Consensus 322 ~~dri~~l~~G~~~~ 336 (555)
||++++|++|++..
T Consensus 190 -~d~v~~l~~g~i~~ 203 (207)
T cd03369 190 -YDKILVMDAGEVKE 203 (207)
T ss_pred -CCEEEEEECCEEEe
Confidence 99999999998753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=321.54 Aligned_cols=201 Identities=25% Similarity=0.373 Sum_probs=157.3
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|++++|++ +++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISI 82 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEE
Confidence 799999999964 479999999999999999999999999999999999999999999998743 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..|+.+|+..... .. ...+...+ ... .+...+..+ .
T Consensus 83 ~~q~~~l~-~~tv~enl~~~~~--~~----~~~~~~~~------------------------~~~---~l~~~~~~l--~ 126 (221)
T cd03244 83 IPQDPVLF-SGTIRSNLDPFGE--YS----DEELWQAL------------------------ERV---GLKEFVESL--P 126 (221)
T ss_pred ECCCCccc-cchHHHHhCcCCC--CC----HHHHHHHH------------------------HHh---CcHHHHHhc--c
Confidence 99998864 5699998742100 00 00000000 000 011111111 1
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhc
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~ 323 (555)
.|+.. ..++.+..|||||+||++|||||+.+|++|||||||++||+.+++++.++|++ .+.|||++|||++++.. |
T Consensus 127 ~~l~~-~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 204 (221)
T cd03244 127 GGLDT-VVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-S 204 (221)
T ss_pred ccccc-ccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-C
Confidence 23432 24567889999999999999999999999999999999999999999998864 46899999999999975 9
Q ss_pred ceeEEecCCeEee
Q 008750 324 TKIVETEMGVSRT 336 (555)
Q Consensus 324 dri~~l~~G~~~~ 336 (555)
|+|++|++|++..
T Consensus 205 d~i~~l~~g~~~~ 217 (221)
T cd03244 205 DRILVLDKGRVVE 217 (221)
T ss_pred CEEEEEECCeEEe
Confidence 9999999998743
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=362.31 Aligned_cols=214 Identities=19% Similarity=0.279 Sum_probs=174.4
Q ss_pred CccEEEEeEEEEeC---CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCCC----------
Q 008750 95 SSGVKLENISKSYK---GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSN---------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~---~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~g~~---------- 160 (555)
.++|+++||++.|+ ++++|+||||+|++||++||+|+||||||||+|+|+|+++ |++|+|.++|.+
T Consensus 257 ~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~ 336 (506)
T PRK13549 257 EVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336 (506)
T ss_pred CceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHH
Confidence 35799999999994 4579999999999999999999999999999999999998 599999998743
Q ss_pred -ceEEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 -MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 -~~ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
..++|++|++ .+++..||.+|+....... +... ...+.....
T Consensus 337 ~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~~---------------------~~~~~~~~~ 382 (506)
T PRK13549 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDR-------------FTGG---------------------SRIDDAAEL 382 (506)
T ss_pred HCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhh-------------hccC---------------------cccChHHHH
Confidence 2489999996 3566789999985321000 0000 000011123
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|. +.|.|||+||
T Consensus 383 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~s 462 (506)
T PRK13549 383 KTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVIS 462 (506)
T ss_pred HHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEEC
Confidence 4678889999996446789999999999999999999999999999999999999999999888764 4689999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
||++++.++||++++|++|++. +.|..++
T Consensus 463 Hd~~~~~~~~d~v~~l~~G~i~-~~~~~~~ 491 (506)
T PRK13549 463 SELPEVLGLSDRVLVMHEGKLK-GDLINHN 491 (506)
T ss_pred CCHHHHHHhCCEEEEEECCEEE-EEecccc
Confidence 9999999999999999999974 5555544
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-40 Score=323.46 Aligned_cols=208 Identities=25% Similarity=0.405 Sum_probs=161.9
Q ss_pred EEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 98 VKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
|+++|++++|+ ++.+|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999996 56799999999999999999999999999999999999999999999988532 48999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.++ ..|+.+|+......... ..+...+ .. ..+.+.+..+
T Consensus 81 ~q~~~~~-~~tv~~nl~~~~~~~~~-----~~~~~~~------------------------~~-------~~l~~~~~~l 123 (236)
T cd03253 81 PQDTVLF-NDTIGYNIRYGRPDATD-----EEVIEAA------------------------KA-------AQIHDKIMRF 123 (236)
T ss_pred CCCChhh-cchHHHHHhhcCCCCCH-----HHHHHHH------------------------HH-------cCcHHHHHhc
Confidence 9998775 57999998543110000 0000000 00 0111222222
Q ss_pred --CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhh
Q 008750 247 --GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 --gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~ 322 (555)
|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|.+ .+.|||+|||+++++..
T Consensus 124 ~~~~~-~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~- 201 (236)
T cd03253 124 PDGYD-TIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN- 201 (236)
T ss_pred ccccc-chhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-
Confidence 333 234667889999999999999999999999999999999999999999888753 28899999999999975
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++++|++|++. +.|...++.
T Consensus 202 ~d~~~~l~~g~i~-~~~~~~~~~ 223 (236)
T cd03253 202 ADKIIVLKDGRIV-ERGTHEELL 223 (236)
T ss_pred CCEEEEEECCEEE-eeCCHHHHh
Confidence 9999999999874 556655543
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-40 Score=312.46 Aligned_cols=162 Identities=26% Similarity=0.428 Sum_probs=145.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig 164 (555)
++|+++|++++| +|+++||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++
T Consensus 3 ~~l~~~~l~~~~----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 3 PVLEVRGLSVKG----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred cEEEEeccEEEe----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 469999999999 9999999999999999999999999999999999999999999998743 2599
Q ss_pred EEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 165 FLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 165 ~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
|++|++ .+++..|+.||+...
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~-------------------------------------------------------- 102 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALS-------------------------------------------------------- 102 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHH--------------------------------------------------------
Confidence 999985 456778998886310
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
. .||||||||++|||||+.+|++|||||||++||+.+++.+.+.+.+ .+.|+|++|||+++
T Consensus 103 ----------~------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 166 (182)
T cd03215 103 ----------S------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDE 166 (182)
T ss_pred ----------h------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 0 0999999999999999999999999999999999999999988753 47899999999999
Q ss_pred HHhhcceeEEecCCe
Q 008750 319 LDQLCTKIVETEMGV 333 (555)
Q Consensus 319 l~~~~dri~~l~~G~ 333 (555)
+..+||+|++|++|+
T Consensus 167 ~~~~~d~v~~l~~G~ 181 (182)
T cd03215 167 LLGLCDRILVMYEGR 181 (182)
T ss_pred HHHhCCEEEEecCCc
Confidence 999999999999886
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=310.53 Aligned_cols=162 Identities=33% Similarity=0.478 Sum_probs=144.6
Q ss_pred EEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEE
Q 008750 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v 166 (555)
|+++|++++|++. ++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|+
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~ 80 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLEKALSSLISVL 80 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHHHHHHHhhEEEE
Confidence 4789999999764 79999999999999999999999999999999999999999999999853 248999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
+|++.++ ..|+++|+
T Consensus 81 ~q~~~~~-~~tv~~~i---------------------------------------------------------------- 95 (178)
T cd03247 81 NQRPYLF-DTTLRNNL---------------------------------------------------------------- 95 (178)
T ss_pred ccCCeee-cccHHHhh----------------------------------------------------------------
Confidence 9988664 35665542
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcc
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~d 324 (555)
+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|.+ .+.|+|++|||++++. .||
T Consensus 96 ----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d 164 (178)
T cd03247 96 ----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMD 164 (178)
T ss_pred ----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCC
Confidence 357999999999999999999999999999999999999999888753 4789999999999996 699
Q ss_pred eeEEecCCeEe
Q 008750 325 KIVETEMGVSR 335 (555)
Q Consensus 325 ri~~l~~G~~~ 335 (555)
++++|++|++.
T Consensus 165 ~~~~l~~g~i~ 175 (178)
T cd03247 165 KILFLENGKII 175 (178)
T ss_pred EEEEEECCEEE
Confidence 99999999874
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=306.23 Aligned_cols=209 Identities=25% Similarity=0.344 Sum_probs=173.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||+++..++.+|++|||++++||++|||||||||||||||.|+|.+.|++|++.++|.+. .-+.+
T Consensus 1 mi~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred CeeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 48999999999999999999999999999999999999999999999999999999999998753 46999
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc--cHHHHHHHHhh
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD--TLDAKVSKLMP 244 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~ 244 (555)
||+..+.|..||+|.+..+.... ..+.. +..+.++++|.
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~---------------------------------------~~g~~~~e~~~i~~~ala 121 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPH---------------------------------------RSGREPEEDERIAAQALA 121 (259)
T ss_pred ccCcccccceEHHHHHHhccccc---------------------------------------ccCCCchhhHHHHHHHHH
Confidence 99999999999999875432100 00011 12233566677
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhcc------CCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecC
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD 315 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~------~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd 315 (555)
..++. .+..|...+|||||||||.|||+|++ ++.+|+||||||+||........+.. .+.|..|+.|=||
T Consensus 122 ~~d~~-~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHD 200 (259)
T COG4559 122 ATDLS-GLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHD 200 (259)
T ss_pred HcChh-hhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 77775 45678888999999999999999987 44589999999999998877766654 3568999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++.+..+||||++|.+|++ +..|...+.+.
T Consensus 201 LNLAA~YaDrivll~~Grv-~a~g~p~~vlt 230 (259)
T COG4559 201 LNLAAQYADRIVLLHQGRV-IASGSPQDVLT 230 (259)
T ss_pred chHHHHhhheeeeeeCCeE-eecCCHHHhcC
Confidence 9999999999999999997 56777665543
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=313.54 Aligned_cols=170 Identities=29% Similarity=0.387 Sum_probs=151.3
Q ss_pred cEEEEeEEEEeCC------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC-------c
Q 008750 97 GVKLENISKSYKG------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN-------M 161 (555)
Q Consensus 97 ~i~l~nls~~y~~------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~-------~ 161 (555)
.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|++ +|++|+|.++|.+ .
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~ 82 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKRSFRK 82 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchHhhhh
Confidence 4899999999975 67999999999999999999999999999999999999 9999999998854 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.++|++|++.+++..|+.+|+.... .
T Consensus 83 ~i~~~~q~~~~~~~~t~~~~i~~~~---------------------------------------------------~--- 108 (194)
T cd03213 83 IIGYVPQDDILHPTLTVRETLMFAA---------------------------------------------------K--- 108 (194)
T ss_pred eEEEccCcccCCCCCcHHHHHHHHH---------------------------------------------------H---
Confidence 5899999998877889998863110 0
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA- 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~- 317 (555)
..+|||||+||++|||||+.+|++|||||||++||+.+++.+.+.|++ .+.|+|+||||++
T Consensus 109 ---------------~~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 173 (194)
T cd03213 109 ---------------LRGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSS 173 (194)
T ss_pred ---------------hccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchH
Confidence 007999999999999999999999999999999999999999888753 4889999999996
Q ss_pred HHHhhcceeEEecCCeEe
Q 008750 318 FLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~ 335 (555)
++..+||+|++|++|++.
T Consensus 174 ~~~~~~d~v~~l~~G~i~ 191 (194)
T cd03213 174 EIFELFDKLLLLSQGRVI 191 (194)
T ss_pred HHHHhcCEEEEEeCCEEE
Confidence 788899999999999874
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=361.37 Aligned_cols=210 Identities=15% Similarity=0.266 Sum_probs=169.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.++|+++|+++.|+ .+|+|+||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+ ..|
T Consensus 263 ~~~l~~~~l~~~~~--~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 263 ETVFEVRNVTSRDR--KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred CcEEEEeCccccCC--CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 45799999999874 48999999999999999999999999999999999999999999998742 248
Q ss_pred EEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++ .+++..||.+|+......... ..... . ..........++.
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~------~--------------~~~~~~~~~~~~~ 390 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDG----------GYKGA------M--------------GLFHEVDEQRTAE 390 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccc----------ccccc------c--------------cccChHHHHHHHH
Confidence 9999984 466788999997532100000 00000 0 0000011124567
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~ 317 (555)
++++.+|+..+..++++.+|||||||||+|||||+.+|+||||||||++||+.+.+.+.++|+ +.|.|||+||||++
T Consensus 391 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~ 470 (510)
T PRK09700 391 NQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP 470 (510)
T ss_pred HHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 889999996456799999999999999999999999999999999999999999999998875 35899999999999
Q ss_pred HHHhhcceeEEecCCeEee
Q 008750 318 FLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~ 336 (555)
++..+||+|++|++|++..
T Consensus 471 ~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 471 EIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred HHHhhCCEEEEEECCEEEE
Confidence 9999999999999999753
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=309.04 Aligned_cols=157 Identities=30% Similarity=0.541 Sum_probs=139.8
Q ss_pred EEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 478999999975 469999999999999999999999999999999999999999999998743 25899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++ .|+.+| +
T Consensus 81 ~~q~~~~~~-~tv~~~-------------------------------------------------------------l-- 96 (173)
T cd03246 81 LPQDDELFS-GSIAEN-------------------------------------------------------------I-- 96 (173)
T ss_pred ECCCCcccc-CcHHHH-------------------------------------------------------------C--
Confidence 999986543 365432 0
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
|||||+||++|||||+.+|++|||||||++||+.++.++.+.|++ .+.|+|++|||++++. +
T Consensus 97 --------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~-~ 161 (173)
T cd03246 97 --------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA-S 161 (173)
T ss_pred --------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-h
Confidence 999999999999999999999999999999999999999888743 5789999999999995 7
Q ss_pred cceeEEecCCe
Q 008750 323 CTKIVETEMGV 333 (555)
Q Consensus 323 ~dri~~l~~G~ 333 (555)
||+|++|++|+
T Consensus 162 ~d~v~~l~~G~ 172 (173)
T cd03246 162 ADRILVLEDGR 172 (173)
T ss_pred CCEEEEEECCC
Confidence 99999999885
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=343.72 Aligned_cols=208 Identities=22% Similarity=0.283 Sum_probs=169.1
Q ss_pred CccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc
Q 008750 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~ 171 (555)
.++++++||++.|++ +++|+|+||+|.+|+++||+|+||||||||+++|+|+++|++|+|.++|... ++.+.+.
T Consensus 19 ~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~---~i~~~~~ 95 (549)
T PRK13545 19 KPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA---LIAISSG 95 (549)
T ss_pred cceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---eEEeccc
Confidence 457999999999976 4699999999999999999999999999999999999999999999987543 3333444
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
+.+..|+.+|+..... .. .........++..+++.+|+. .
T Consensus 96 l~~~lTV~EnL~l~~~---------------~~------------------------~~~~~e~~e~i~elLe~lgL~-~ 135 (549)
T PRK13545 96 LNGQLTGIENIELKGL---------------MM------------------------GLTKEKIKEIIPEIIEFADIG-K 135 (549)
T ss_pred cCCCCcHHHHHHhhhh---------------hc------------------------CCCHHHHHHHHHHHHHHcCCh-h
Confidence 5566799998743110 00 001112234466778888885 4
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++++.+||||||||++|||||+.+|++|||||||++||+.++..+.+.|. +.|.|||+||||++++..+||+|++
T Consensus 136 ~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIiv 215 (549)
T PRK13545 136 FIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALW 215 (549)
T ss_pred HhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEE
Confidence 5688899999999999999999999999999999999999999999888874 3589999999999999999999999
Q ss_pred ecCCeEeeccCChHHHHH
Q 008750 329 TEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 329 l~~G~~~~~~G~y~~~~~ 346 (555)
|++|++. +.|..+++..
T Consensus 216 L~~GkIv-~~G~~~el~~ 232 (549)
T PRK13545 216 LHYGQVK-EYGDIKEVVD 232 (549)
T ss_pred EECCEEE-EECCHHHHHh
Confidence 9999874 4566655544
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=359.85 Aligned_cols=207 Identities=19% Similarity=0.266 Sum_probs=170.7
Q ss_pred CccEEEEeEEEEe---CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCC----------
Q 008750 95 SSGVKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN---------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y---~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~---------- 160 (555)
..+|+++|++++| +++.+|+|+||+|.+||++||+|+||||||||+|+|+|+++| ++|+|.++|.+
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~ 334 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAI 334 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHH
Confidence 3479999999999 345799999999999999999999999999999999999985 89999998743
Q ss_pred -ceEEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 161 -MKIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 161 -~~ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.+++|++|++ .+++..||.+|+........ ... .........
T Consensus 335 ~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~-------------~~~---------------------~~~~~~~~~ 380 (500)
T TIGR02633 335 RAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSF-------------CFK---------------------MRIDAAAEL 380 (500)
T ss_pred hCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhh-------------ccC---------------------CcCCHHHHH
Confidence 2489999996 46678899999853210000 000 000011123
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
.++.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+++. +.|.|||+||
T Consensus 381 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivs 460 (500)
T TIGR02633 381 QIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVS 460 (500)
T ss_pred HHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEEC
Confidence 5677889999996445789999999999999999999999999999999999999999998887653 4689999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
||++++.++||+|++|++|++.
T Consensus 461 Hd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 461 SELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred CCHHHHHHhCCEEEEEECCEEE
Confidence 9999999999999999999874
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=360.47 Aligned_cols=259 Identities=20% Similarity=0.325 Sum_probs=185.8
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
.+......+...+.+...++++.+....+.........+. .......|+++||+|+|++ +++|+|+||+|++|+++
T Consensus 288 ~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~ 364 (585)
T TIGR01192 288 RLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPADAPE---LPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTV 364 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCccCCC---CCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEE
Confidence 4444444455667777777777765543321111000000 0112345999999999975 57999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.+ ++.|++||+..+.... . .
T Consensus 365 ~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~Ni~~~~~~~-~----~ 438 (585)
T TIGR01192 365 AIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGL-FNRSIRENIRLGREGA-T----D 438 (585)
T ss_pred EEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCcc-CcccHHHHHhcCCCCC-C----H
Confidence 99999999999999999999999999999998642 59999999987 5689999996531100 0 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+++...++ .......+.++.. |++. ........||||||||++|||||+.
T Consensus 439 ~~~~~a~~---------------------------~~~~~~~i~~l~~--g~~t-~~~~~~~~LSgGq~qrl~lARall~ 488 (585)
T TIGR01192 439 EEVYEAAK---------------------------AAAAHDFILKRSN--GYDT-LVGERGNRLSGGERQRLAIARAILK 488 (585)
T ss_pred HHHHHHHH---------------------------HhCcHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHhc
Confidence 00000000 0001111111111 3332 2334567899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+|++|||||||++||+.+++.+.+.|.+ .+.|+|+|||+++.+. .||+|++|++|++. ..|+++++.+.
T Consensus 489 ~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~~ 559 (585)
T TIGR01192 489 NAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLI-EKGSFQELIQK 559 (585)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEE-EECCHHHHHHC
Confidence 9999999999999999999999988754 4899999999999996 59999999999874 57887776543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=362.98 Aligned_cols=256 Identities=23% Similarity=0.387 Sum_probs=184.8
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGE 124 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge 124 (555)
.++......+.+.+.++...+++.+....+.+.... ..+. ......|+++||+|+|++ +++|+|+||+|++||
T Consensus 285 ~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~----~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~ 359 (571)
T TIGR02203 285 RPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG-TRAI----ERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGE 359 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CCCC----CCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCC
Confidence 355555555666777777777766654332211110 0000 012345999999999964 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ |+.|++||+.........
T Consensus 360 ~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l-f~~Ti~~Ni~~~~~~~~~--- 435 (571)
T TIGR02203 360 TVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVL-FNDTIANNIAYGRTEQAD--- 435 (571)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCccc-ccccHHHHHhcCCCCCCC---
Confidence 9999999999999999999999999999999998542 59999999987 788999998643110000
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
.+++.+.+. . . .+.+.+.++ |++....+ .-..||||||||++|||
T Consensus 436 -~~~i~~~l~------------------------~---~----~l~~~i~~lp~gldt~i~~-~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 436 -RAEIERALA------------------------A---A----YAQDFVDKLPLGLDTPIGE-NGVLLSGGQRQRLAIAR 482 (571)
T ss_pred -HHHHHHHHH------------------------H---c----ChHHHHHhCcCcccceecC-CCCcCCHHHHHHHHHHH
Confidence 000000000 0 0 111222222 33322222 23579999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+.+|+||||||||++||..+.+.+.+.|.+ .++|+|+||||...+. .||+|++|++|++. ..|++++.+.
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~-~~D~ii~l~~g~i~-~~g~~~~l~~ 556 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIE-KADRIVVMDDGRIV-ERGTHNELLA 556 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHH-hCCEEEEEeCCEEE-eeCCHHHHHH
Confidence 99999999999999999999999999988865 4799999999999885 69999999999874 5677777654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=312.78 Aligned_cols=173 Identities=32% Similarity=0.521 Sum_probs=143.0
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccH
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv 178 (555)
+++||+++|+++++|+|+||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+.. + ... ...
T Consensus 1 ~~~~l~~~~~~~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~-----~---~~~-~~~ 71 (180)
T cd03214 1 EVENLSVGYGGRTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLA-----S---LSP-KEL 71 (180)
T ss_pred CeeEEEEEECCeeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECC-----c---CCH-HHH
Confidence 4789999998888999999999999999999999999999999999999999999999864320 0 000 000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
+..+. .+.++++.+|+. ...++.+.
T Consensus 72 ~~~i~------------------------------------------------------~~~q~l~~~gl~-~~~~~~~~ 96 (180)
T cd03214 72 ARKIA------------------------------------------------------YVPQALELLGLA-HLADRPFN 96 (180)
T ss_pred HHHHh------------------------------------------------------HHHHHHHHcCCH-hHhcCCcc
Confidence 00000 000155667775 34577889
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
+|||||+||++|||||+.+|++|||||||++||+.+++++.+.+++ . +.|+|++|||++++..+||++++|++|++
T Consensus 97 ~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 176 (180)
T cd03214 97 ELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRI 176 (180)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999988753 2 78999999999999999999999999986
Q ss_pred e
Q 008750 335 R 335 (555)
Q Consensus 335 ~ 335 (555)
.
T Consensus 177 ~ 177 (180)
T cd03214 177 V 177 (180)
T ss_pred E
Confidence 4
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=321.37 Aligned_cols=194 Identities=21% Similarity=0.310 Sum_probs=159.3
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCCC--------ceEEEEecccc--cCcCcc
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN--------MKIAFLSQEFE--VSMSRT 177 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~g~~--------~~ig~v~Q~~~--~~~~~t 177 (555)
+|+|+||+|++|++++|+|+||||||||+++|+|+++| ++|+|.++|.+ ..++|++|++. +....|
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~t 80 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFT 80 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecCchhhcCcccC
Confidence 58999999999999999999999999999999999999 89999999853 26999999985 334578
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc--cccCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA--DDGDR 255 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~--~~~~~ 255 (555)
+.+++...... .. ........++.++++.+|+.. ...++
T Consensus 81 ~~~~~~~~~~~---------------~~------------------------~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 121 (230)
T TIGR02770 81 MGNHAIETLRS---------------LG------------------------KLSKQARALILEALEAVGLPDPEEVLKK 121 (230)
T ss_pred HHHHHHHHHHH---------------cC------------------------ccHHHHHHHHHHHHHHcCCCchHHHHhC
Confidence 88876432100 00 000112345777888999863 45688
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecC
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .+.|||++|||++++..+||+|++|++
T Consensus 122 ~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 201 (230)
T TIGR02770 122 YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDD 201 (230)
T ss_pred ChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 8999999999999999999999999999999999999999998887753 478999999999999999999999999
Q ss_pred CeEeeccCChHHHH
Q 008750 332 GVSRTYEGNYSQYV 345 (555)
Q Consensus 332 G~~~~~~G~y~~~~ 345 (555)
|++. ..|..+++.
T Consensus 202 G~i~-~~~~~~~~~ 214 (230)
T TIGR02770 202 GRIV-ERGTVKEIF 214 (230)
T ss_pred CEEE-EeCCHHHHH
Confidence 9974 456655543
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=321.80 Aligned_cols=206 Identities=23% Similarity=0.328 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeCC--------------------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q 008750 97 GVKLENISKSYKG--------------------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (555)
Q Consensus 97 ~i~l~nls~~y~~--------------------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (555)
.|+++||+++|.. +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 3777888877721 24999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 157 AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 157 ~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
+|. +++++|++.+.+..|+.+|+..... .. ........
T Consensus 84 ~g~---~~~~~~~~~~~~~~tv~enl~~~~~---------------~~------------------------~~~~~~~~ 121 (264)
T PRK13546 84 NGE---VSVIAISAGLSGQLTGIENIEFKML---------------CM------------------------GFKRKEIK 121 (264)
T ss_pred CCE---EeEEecccCCCCCCcHHHHHHHHHH---------------Hc------------------------CCCHHHHH
Confidence 873 6788888777677899998743210 00 00011122
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
..+..+++.+++. ...++++.+|||||+|||+||+||+.+|++|||||||++||+.+.+.+.+.|. +.+.|||+||
T Consensus 122 ~~~~~~l~~~~l~-~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiis 200 (264)
T PRK13546 122 AMTPKIIEFSELG-EFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVS 200 (264)
T ss_pred HHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3345566677775 45688899999999999999999999999999999999999999988888764 3589999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++..+||+|++|++|++. ..|.++++..
T Consensus 201 H~~~~i~~~~d~i~~l~~G~i~-~~g~~~~~~~ 232 (264)
T PRK13546 201 HNLGQVRQFCTKIAWIEGGKLK-DYGELDDVLP 232 (264)
T ss_pred CCHHHHHHHcCEEEEEECCEEE-EeCCHHHHHH
Confidence 9999999999999999999974 5577776654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=311.11 Aligned_cols=170 Identities=24% Similarity=0.332 Sum_probs=150.0
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCceEEEEcCCC------ceEE
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDSGNVIKAKSN------MKIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~G~I~~~g~~------~~ig 164 (555)
.|+++|+++.|++ +++|+|+||+|++|++++|+|+||||||||+++|+|++ +|++|+|.++|.+ ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~~~~~~i~ 82 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDKNFQRSTG 82 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHHHhhhceE
Confidence 5899999999964 67999999999999999999999999999999999986 4899999998854 2699
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..|+++|+.... .+
T Consensus 83 ~~~q~~~~~~~~tv~~~l~~~~-------------------------------------------------------~~- 106 (192)
T cd03232 83 YVEQQDVHSPNLTVREALRFSA-------------------------------------------------------LL- 106 (192)
T ss_pred EecccCccccCCcHHHHHHHHH-------------------------------------------------------HH-
Confidence 9999988878889999874210 00
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-HHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~-~l~ 320 (555)
.+|||||+||++|||||+.+|++|||||||++||+.++.++.+.+++ .+.|+|+||||++ .+.
T Consensus 107 -------------~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~ 173 (192)
T cd03232 107 -------------RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIF 173 (192)
T ss_pred -------------hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHH
Confidence 07999999999999999999999999999999999999999988753 4899999999998 477
Q ss_pred hhcceeEEecC-CeEe
Q 008750 321 QLCTKIVETEM-GVSR 335 (555)
Q Consensus 321 ~~~dri~~l~~-G~~~ 335 (555)
.+||+|++|++ |++.
T Consensus 174 ~~~d~i~~l~~~g~i~ 189 (192)
T cd03232 174 EKFDRLLLLKRGGKTV 189 (192)
T ss_pred hhCCEEEEEcCCCeEE
Confidence 89999999998 8864
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-39 Score=355.57 Aligned_cols=252 Identities=24% Similarity=0.353 Sum_probs=184.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+...+.+..+.+++.+....+.+... .... ......|+++|++|+|++ +++|+|+||+|++|++
T Consensus 273 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~---~~~~---~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~ 346 (544)
T TIGR01842 273 PIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP---AMPL---PEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEA 346 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC---CCCC---CCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCE
Confidence 4455555556677777777777665433221110 0000 112345999999999964 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.++ +.|++||+.....+ ..
T Consensus 347 ~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf-~~ti~~Ni~~~~~~-~~---- 420 (544)
T TIGR01842 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELF-PGTVAENIARFGEN-AD---- 420 (544)
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccc-cccHHHHHhccCCC-CC----
Confidence 999999999999999999999999999999998642 599999999874 56999998632100 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
.+++...++ ...+.+.++.+ |++. .......+||||||||++||||
T Consensus 421 ~~~~~~~~~-------------------------------~~~~~~~i~~l~~gl~t-~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 421 PEKIIEAAK-------------------------------LAGVHELILRLPDGYDT-VIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHHHHHHHH-------------------------------HhChHHHHHhCcccccc-ccCCCcCCCCHHHHHHHHHHHH
Confidence 000000000 00112233333 4432 2344567899999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+.+|++|||||||++||+.+++.+.+.|.+ .++|+|+|||+++.+. .||+|++|++|++ ...|+++++.
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~-~~d~i~~l~~G~i-~~~g~~~~l~ 541 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLG-CVDKILVLQDGRI-ARFGERDEVL 541 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH-hCCEEEEEECCEE-EeeCCHHHHh
Confidence 9999999999999999999999999988754 4789999999999875 6999999999987 4568776553
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=313.97 Aligned_cols=170 Identities=27% Similarity=0.388 Sum_probs=147.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------eEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~-----------~ig 164 (555)
|+++|++++|+++++|+|+||+|.+||+++|+|+||||||||+++|+|+ ++|++|+|.++|.+. .++
T Consensus 1 l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIF 80 (200)
T ss_pred CeEEEEEEEeCCEEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEE
Confidence 4789999999888899999999999999999999999999999999999 579999999987431 399
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++..++.+++
T Consensus 81 ~v~q~~~~~~~~~~~~~l-------------------------------------------------------------- 98 (200)
T cd03217 81 LAFQYPPEIPGVKNADFL-------------------------------------------------------------- 98 (200)
T ss_pred EeecChhhccCccHHHHH--------------------------------------------------------------
Confidence 999998776655654432
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~ 321 (555)
+....+|||||+||++|||||+.+|++|||||||++||+.+...+.+.|.+ .+.|||++||+++++..
T Consensus 99 ---------~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 99 ---------RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred ---------hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 011247999999999999999999999999999999999999999888753 47899999999999988
Q ss_pred -hcceeEEecCCeEeeccC
Q 008750 322 -LCTKIVETEMGVSRTYEG 339 (555)
Q Consensus 322 -~~dri~~l~~G~~~~~~G 339 (555)
+||+|++|++|++. ..|
T Consensus 170 ~~~d~i~~l~~G~i~-~~~ 187 (200)
T cd03217 170 IKPDRVHVLYDGRIV-KSG 187 (200)
T ss_pred hhCCEEEEEECCEEE-EEc
Confidence 79999999999874 344
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=324.38 Aligned_cols=199 Identities=29% Similarity=0.376 Sum_probs=165.2
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEec
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQ 168 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q 168 (555)
+++||++. .+|+|+||+|++|++++|+|+||||||||+++|+|+++ .+|+|.++|.+. .++|++|
T Consensus 2 ~~~~l~~~----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~q 76 (248)
T PRK03695 2 QLNDVAVS----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLSQ 76 (248)
T ss_pred cccccchh----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEecc
Confidence 57888875 38999999999999999999999999999999999985 599999988532 4899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++..|+.+|+...... .........++.++++.+|+
T Consensus 77 ~~~~~~~~tv~~nl~~~~~~----------------------------------------~~~~~~~~~~~~~~l~~~~l 116 (248)
T PRK03695 77 QQTPPFAMPVFQYLTLHQPD----------------------------------------KTRTEAVASALNEVAEALGL 116 (248)
T ss_pred cCccCCCccHHHHHHhcCcc----------------------------------------CCCcHHHHHHHHHHHHHcCC
Confidence 98777888999987532100 00011123456778888998
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhcc-------CCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~-------~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
. ...++++..||||||||++|||||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||+++
T Consensus 117 ~-~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~ 195 (248)
T PRK03695 117 D-DKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNH 195 (248)
T ss_pred H-hHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHH
Confidence 6 45688899999999999999999998 6799999999999999999999988753 47899999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+..+||+|++|++|++. ..|..+++
T Consensus 196 ~~~~~d~i~~l~~G~i~-~~g~~~~~ 220 (248)
T PRK03695 196 TLRHADRVWLLKQGKLL-ASGRRDEV 220 (248)
T ss_pred HHHhCCEEEEEECCEEE-EECCHHHH
Confidence 99999999999999974 56665543
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=291.62 Aligned_cols=209 Identities=26% Similarity=0.415 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------------- 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------------- 160 (555)
.|+++|+++.||...+|-||+|+.+.||.+.++||+|+|||||+|.+.=+.-|.+|+..+.+..
T Consensus 2 sirv~~in~~yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr 81 (242)
T COG4161 2 SIQLNGINCFYGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLR 81 (242)
T ss_pred ceEEcccccccccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999876532
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..+|+|+|...+++.+||.+|+..+... ...+...+...++.
T Consensus 82 ~~vgmvfqqy~lwphltv~enlieap~k--------------------------------------v~gl~~~qa~~~a~ 123 (242)
T COG4161 82 RNVGMVFQQYNLWPHLTVQENLIEAPCR--------------------------------------VLGLSKDQALARAE 123 (242)
T ss_pred HhhhhhhhhhccCchhHHHHHHHhhhHH--------------------------------------HhCCCHHHHHHHHH
Confidence 2599999999999999999998653211 01223344566788
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~ 317 (555)
++|+.+.+. ..+||.|-.|||||+|||+|||||+++|++||+||||++|||+....+.++++ ..|.|-+||||..+
T Consensus 124 ellkrlrl~-~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~ 202 (242)
T COG4161 124 KLLKRLRLK-PYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVE 202 (242)
T ss_pred HHHHHhccc-cccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehh
Confidence 889999885 67899999999999999999999999999999999999999998888777765 46999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+|.+|++|++|+++. .|+-+-|.
T Consensus 203 va~k~as~vvyme~g~ive-~g~a~~ft 229 (242)
T COG4161 203 VARKTASRVVYMENGHIVE-QGDASCFT 229 (242)
T ss_pred HHHhhhhheEeeecCeeEe-ecchhhcc
Confidence 9999999999999999754 45555443
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=321.47 Aligned_cols=213 Identities=21% Similarity=0.294 Sum_probs=167.0
Q ss_pred CCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------
Q 008750 93 SISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------- 160 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------- 160 (555)
...+.|+++|++++|++ ..+|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 15 ~~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 94 (257)
T cd03288 15 GLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLR 94 (257)
T ss_pred cCCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHh
Confidence 44567999999999976 579999999999999999999999999999999999999999999998743
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..|+|++|++.++ ..|+.+|+...... . ...+...+. ...+.
T Consensus 95 ~~i~~v~q~~~l~-~~tv~~nl~~~~~~--~----~~~~~~~l~-------------------------------~~~l~ 136 (257)
T cd03288 95 SRLSIILQDPILF-SGSIRFNLDPECKC--T----DDRLWEALE-------------------------------IAQLK 136 (257)
T ss_pred hhEEEECCCCccc-ccHHHHhcCcCCCC--C----HHHHHHHHH-------------------------------HhCcH
Confidence 2589999998765 46998886321000 0 000000000 00122
Q ss_pred HHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCH
Q 008750 241 KLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~ 316 (555)
++++.+ |++. ..++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++.+ .+.|+|++||++
T Consensus 137 ~~~~~~~~~l~~-~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~ 215 (257)
T cd03288 137 NMVKSLPGGLDA-VVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRV 215 (257)
T ss_pred HHHhhcccccCc-EeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecCh
Confidence 233333 4542 34567789999999999999999999999999999999999999999988754 489999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+.+.. ||+|++|++|++. ..|+.+++..
T Consensus 216 ~~~~~-~dri~~l~~G~i~-~~g~~~~~~~ 243 (257)
T cd03288 216 STILD-ADLVLVLSRGILV-ECDTPENLLA 243 (257)
T ss_pred HHHHh-CCEEEEEECCEEE-EeCCHHHHHh
Confidence 99986 9999999999974 5677666543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=315.45 Aligned_cols=196 Identities=21% Similarity=0.351 Sum_probs=150.2
Q ss_pred EEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceE
Q 008750 99 KLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKI 163 (555)
Q Consensus 99 ~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~i 163 (555)
.+.|+.|+|+ +.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 5789999996 5679999999999999999999999999999999999999999999998742 258
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.++ ..|+.+|+........ .... ..+ ..+ .+...+. .+
T Consensus 82 ~~~~q~~~~~-~~t~~~nl~~~~~~~~---~~~~---~~~------------------------~~~---~l~~~~~-~~ 126 (218)
T cd03290 82 AYAAQKPWLL-NATVEENITFGSPFNK---QRYK---AVT------------------------DAC---SLQPDID-LL 126 (218)
T ss_pred EEEcCCCccc-cccHHHHHhhcCcCCH---HHHH---HHH------------------------HHh---CcHHHHH-hC
Confidence 9999998775 6799999854211000 0000 000 000 0000010 00
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH-----HHcCCCceEEEEecCHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG-----YLGKQDVPMVIISHDRAF 318 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~-----~l~~~~~tvIiiSHd~~~ 318 (555)
..|+. ...++++..|||||+|||+|||||+.+|++|||||||++||+.+++.+.+ .+++.+.|+|++|||+++
T Consensus 127 -~~~~~-~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~ 204 (218)
T cd03290 127 -PFGDQ-TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQY 204 (218)
T ss_pred -cCccc-cCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHH
Confidence 01221 22356788999999999999999999999999999999999999887766 344568999999999999
Q ss_pred HHhhcceeEEecCC
Q 008750 319 LDQLCTKIVETEMG 332 (555)
Q Consensus 319 l~~~~dri~~l~~G 332 (555)
+. .||++++|++|
T Consensus 205 ~~-~~d~i~~l~~G 217 (218)
T cd03290 205 LP-HADWIIAMKDG 217 (218)
T ss_pred Hh-hCCEEEEecCC
Confidence 96 69999999887
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=365.92 Aligned_cols=256 Identities=21% Similarity=0.363 Sum_probs=185.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++......+.+++.+..+.+++.+....+.+.... ..... ......|+++||+|+|++ +++|+|+||+|++|++
T Consensus 410 pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~~~-~~~~~---~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~ 485 (694)
T TIGR01846 410 PVLRLAQLWQDFQQTGIALERLGDILNSPTEPRSA-GLAAL---PELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEF 485 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccCC-CCCCC---CCCCCeEEEEEEEEEcCCCCccccccceEEECCCCE
Confidence 44444444555666666666665544322211110 00000 112345999999999953 4699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ ++.|++||+...... ..
T Consensus 486 vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~l-f~~ti~eNi~~~~~~-~~---- 559 (694)
T TIGR01846 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVL-FSRSIRDNIALCNPG-AP---- 559 (694)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCee-hhhhHHHHHhcCCCC-CC----
Confidence 999999999999999999999999999999998653 48999999887 678999999643110 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
.+.+...++ ... +.+.+..+ |++... .....+||||||||++||||
T Consensus 560 ~~~i~~a~~---------------------------~~~----l~~~i~~lp~gl~t~i-~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 560 FEHVIHAAK---------------------------LAG----AHDFISELPQGYNTEV-GEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HHHHHHHHH---------------------------HcC----hHHHHHhCcCccCcEe-cCCCCCCCHHHHHHHHHHHH
Confidence 000000000 001 11222222 444332 33456899999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|+.+|++|||||||++||+.+++.+.+.|.+ .++|+|+|||+++.+.. ||+|++|++|++ ...|++++....
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-~d~ii~l~~G~i-~~~g~~~~l~~~ 681 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRA-CDRIIVLEKGQI-AESGRHEELLAL 681 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHh-CCEEEEEeCCEE-EEeCCHHHHHHc
Confidence 9999999999999999999999999998865 47999999999999965 999999999997 467888776553
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=356.67 Aligned_cols=256 Identities=18% Similarity=0.245 Sum_probs=183.4
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++......+..++.+..+.+++.+....+.+.... .... ....+.|+++|++|+|++ .++|+|+||+|++|++
T Consensus 269 pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~---~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~ 343 (569)
T PRK10789 269 PMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPV---PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPGQM 343 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCC---CCCCCcEEEEEEEEECCCCCCccccCeeEEECCCCE
Confidence 34444444556677777777766654332211100 0000 112345999999999964 5699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.+ +..|++||+..+..+. .
T Consensus 344 ~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~Ni~~~~~~~-~---- 417 (569)
T PRK10789 344 LGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFL-FSDTVANNIALGRPDA-T---- 417 (569)
T ss_pred EEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCee-ccccHHHHHhcCCCCC-C----
Confidence 999999999999999999999999999999998642 59999999987 4679999986431100 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+.+...++ .. .....+..+- .|++.. .+.....||||||||++|||||+
T Consensus 418 ~~~~~~~~~------------------------~~---~l~~~i~~lp--~gl~t~-~~~~g~~LSgGq~qRi~lARall 467 (569)
T PRK10789 418 QQEIEHVAR------------------------LA---SVHDDILRLP--QGYDTE-VGERGVMLSGGQKQRISIARALL 467 (569)
T ss_pred HHHHHHHHH------------------------Hc---CCHHHHHhCc--Ccccce-ecCCCCcCCHHHHHHHHHHHHHh
Confidence 000000000 00 0111111111 133322 23345689999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++...
T Consensus 468 ~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 538 (569)
T PRK10789 468 LNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALT-EASEILVMQHGHIA-QRGNHDQLAQ 538 (569)
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHH-cCCEEEEEeCCEEE-EecCHHHHHH
Confidence 99999999999999999999999988864 5899999999999986 59999999999874 6688776654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-39 Score=357.54 Aligned_cols=257 Identities=21% Similarity=0.342 Sum_probs=184.1
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
.+......+.+++.+..+.+++.+....+.+.......... ..+....|+++||+|+|++ +++|+|+||+|++||
T Consensus 290 pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge 367 (576)
T TIGR02204 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTL--PVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGE 367 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCCCCCCccC--CcCCCceEEEEEEEEECCCCCCCccccceeEEecCCC
Confidence 44445555566777777777776654332211100000000 0112345999999999964 569999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
+++|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|+||++.+ ++.|++||+..+..+. .
T Consensus 368 ~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~l-f~~Ti~~Ni~~~~~~~-~--- 442 (576)
T TIGR02204 368 TVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVL-FAASVMENIRYGRPDA-T--- 442 (576)
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCcc-ccccHHHHHhcCCCCC-C---
Confidence 9999999999999999999999999999999998542 59999999887 7889999996532100 0
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
.+.+...++ .. . +.+.++.+ |++... ......||||||||++|||
T Consensus 443 -~~~~~~~l~------------------------~~---~----l~~~i~~l~~gl~t~i-~~~g~~LSgGq~Qrl~laR 489 (576)
T TIGR02204 443 -DEEVEAAAR------------------------AA---H----AHEFISALPEGYDTYL-GERGVTLSGGQRQRIAIAR 489 (576)
T ss_pred -HHHHHHHHH------------------------Hc---C----cHHHHHhCCCCCCcee-CCCCCcCCHHHHHHHHHHH
Confidence 000000000 00 0 11122222 443222 2334689999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
|++.+|++||||||||+||+.+++.+.+.|++ .++|+|+|||+++.+. .||+|++|++|++. ..|++++...
T Consensus 490 al~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~-~~d~vi~l~~g~~~-~~g~~~~l~~ 563 (576)
T TIGR02204 490 AILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVL-KADRIVVMDQGRIV-AQGTHAELIA 563 (576)
T ss_pred HHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEE-eeecHHHHHH
Confidence 99999999999999999999999998887764 4799999999999986 59999999999974 4677776543
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=386.35 Aligned_cols=257 Identities=20% Similarity=0.303 Sum_probs=184.3
Q ss_pred hHhHHHHHHHhhhHHHHhccCcchhhhhhcc-cccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEE
Q 008750 53 TVEKKSIAKAQSDVESLFSSSADEFENKKYS-NKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGL 128 (555)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~l 128 (555)
...+..++.+..+.+++++....+++..... ............+.|+++||+|+|++ .++|+|+||+|++|+++||
T Consensus 1120 ~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAI 1199 (1466)
T PTZ00265 1120 MSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAI 1199 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEE
Confidence 3344556777777777666554322110000 00000000112345999999999963 4799999999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCC------------------------------------------------------CceEE
Q 008750 129 VGVNGAGKTTQLRIIAGQEEP------------------------------------------------------DSGNV 154 (555)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p------------------------------------------------------~~G~I 154 (555)
||+||||||||+++|+|+|+| ++|+|
T Consensus 1200 VG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I 1279 (1466)
T PTZ00265 1200 VGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKI 1279 (1466)
T ss_pred ECCCCCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeE
Confidence 999999999999999999998 69999
Q ss_pred EEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHH
Q 008750 155 IKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224 (555)
Q Consensus 155 ~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (555)
.++|.++ .||||+|++.+ |+.|++||+..+..+. ..+++..+++.
T Consensus 1280 ~idG~di~~~~~~~lR~~i~~V~Qep~L-F~gTIreNI~~g~~~a-----t~eeI~~A~k~------------------- 1334 (1466)
T PTZ00265 1280 LLDGVDICDYNLKDLRNLFSIVSQEPML-FNMSIYENIKFGKEDA-----TREDVKRACKF------------------- 1334 (1466)
T ss_pred EECCEEHHhCCHHHHHhhccEeCCCCcc-ccccHHHHHhcCCCCC-----CHHHHHHHHHH-------------------
Confidence 9999753 59999999988 7899999997642100 00001111100
Q ss_pred HHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC
Q 008750 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK 304 (555)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~ 304 (555)
..+.+.+..+-+ |++.... .....||||||||++|||||+.+|+|||||||||+||.++.+.+.+.|.+
T Consensus 1335 --------A~l~~fI~~LP~--GydT~VG-e~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265 1335 --------AAIDEFIESLPN--KYDTNVG-PYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVD 1403 (1466)
T ss_pred --------cCCHHHHHhCcc--ccCCccC-CCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence 011112222211 3332222 23457999999999999999999999999999999999999999888754
Q ss_pred ----CCceEEEEecCHHHHHhhcceeEEecC----CeEeeccCChHHHHH
Q 008750 305 ----QDVPMVIISHDRAFLDQLCTKIVETEM----GVSRTYEGNYSQYVL 346 (555)
Q Consensus 305 ----~~~tvIiiSHd~~~l~~~~dri~~l~~----G~~~~~~G~y~~~~~ 346 (555)
.++|+|+|||+++.+. .||+|++|++ |+++...|++++.+.
T Consensus 1404 ~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1404 IKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred HhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 3899999999999996 5999999999 886667899888764
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=310.24 Aligned_cols=183 Identities=20% Similarity=0.270 Sum_probs=155.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------eEEEEeccc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------KIAFLSQEF 170 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------~ig~v~Q~~ 170 (555)
+|+++|++++|+++.+++ +||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++
T Consensus 1 ~l~~~~l~~~~~~~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNL 79 (195)
T ss_pred CeEEEEeeEEECCcEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhhhhhEEeccCCc
Confidence 378999999998766666 9999999999999999999999999999999999999999998643 489999998
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++..||.+|+...... .....++.++++.+|+.
T Consensus 80 ~~~~~~tv~~~l~~~~~~--------------------------------------------~~~~~~~~~~l~~~~l~- 114 (195)
T PRK13541 80 GLKLEMTVFENLKFWSEI--------------------------------------------YNSAETLYAAIHYFKLH- 114 (195)
T ss_pred CCCccCCHHHHHHHHHHh--------------------------------------------cccHHHHHHHHHHcCCH-
Confidence 777889999998532100 00123455667778885
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhccee
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri 326 (555)
...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++++.++++ +.+.|+|+||||++++.. ||.|
T Consensus 115 ~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 115 DLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred hhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 45688899999999999999999999999999999999999999999998874 468999999999999975 6654
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=303.67 Aligned_cols=157 Identities=33% Similarity=0.573 Sum_probs=138.6
Q ss_pred EEEEeEEEEeCCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 98 VKLENISKSYKGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 98 i~l~nls~~y~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
|+++|++++|++. ++|+|+||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999875 799999999999999999999999999999999999999999999988532 4889
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++ ..|+.|| +
T Consensus 81 ~~~~~~~~-~~t~~e~-------------------------------------------------------------l-- 96 (171)
T cd03228 81 VPQDPFLF-SGTIREN-------------------------------------------------------------I-- 96 (171)
T ss_pred EcCCchhc-cchHHHH-------------------------------------------------------------h--
Confidence 99887543 2344322 0
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhc
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~ 323 (555)
|||||+||++|||||+.+|++|||||||++||+.++..+.+++++ .+.|+|++|||++++.. |
T Consensus 97 --------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~ 161 (171)
T cd03228 97 --------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-A 161 (171)
T ss_pred --------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-C
Confidence 999999999999999999999999999999999999999888753 36899999999999987 9
Q ss_pred ceeEEecCCe
Q 008750 324 TKIVETEMGV 333 (555)
Q Consensus 324 dri~~l~~G~ 333 (555)
|++++|++|+
T Consensus 162 d~~~~l~~g~ 171 (171)
T cd03228 162 DRIIVLDDGR 171 (171)
T ss_pred CEEEEEcCCC
Confidence 9999998874
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=352.62 Aligned_cols=239 Identities=21% Similarity=0.255 Sum_probs=175.9
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~ 126 (555)
++......+.+.+.+..+.+++.+....+.+.. ...... .+....|+++||+|+|++ .++|+|+||+|++|+++
T Consensus 278 pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~-~~~~~~----~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~ 352 (547)
T PRK10522 278 PLLSAVGALPTLLSAQVAFNKLNKLALAPYKAE-FPRPQA----FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELL 352 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccccccc-cccccc----cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEE
Confidence 344444455567777777877766532211100 000000 011235999999999965 56999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .|+|++|++.+ ++.|+++|-. ..
T Consensus 353 aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l-f~~ti~~n~~-~~---------- 420 (547)
T PRK10522 353 FLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHL-FDQLLGPEGK-PA---------- 420 (547)
T ss_pred EEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhH-HHHhhccccC-ch----------
Confidence 99999999999999999999999999999998642 59999999876 5667766510 00
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc--cCC--CCCCCChHHHHHHHHHH
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD--GDR--LVASFSSGWQMRMSLGK 272 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~--~~~--~~~~LSGGqrqRv~lAr 272 (555)
.++.+.++++.+|+.... .+. ...+||||||||++|||
T Consensus 421 --------------------------------------~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lAR 462 (547)
T PRK10522 421 --------------------------------------NPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLL 462 (547)
T ss_pred --------------------------------------HHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHH
Confidence 011122333334433211 011 12489999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
||+.+|++|||||||++||+.+++.+.+.+. ..++|+|+|||+++.+. .||+|++|++|++..+.|+-.
T Consensus 463 al~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~e~~~~~~ 535 (547)
T PRK10522 463 ALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFI-HADRLLEMRNGQLSELTGEER 535 (547)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHH-hCCEEEEEECCEEEEecCCch
Confidence 9999999999999999999999998877663 24899999999998875 699999999999988877643
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=309.19 Aligned_cols=176 Identities=24% Similarity=0.276 Sum_probs=150.9
Q ss_pred cEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCCc--------
Q 008750 97 GVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM-------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~~-------- 161 (555)
.+.++||+|.|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~~ 82 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKYP 82 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhhc
Confidence 478999999995 4579999999999999999999999999999999999999 8999999988532
Q ss_pred -eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 -KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 -~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
.++|++|++.+++..||.+|+..... .
T Consensus 83 ~~i~~~~q~~~~~~~~tv~~~l~~~~~---------------------------------------------------~- 110 (202)
T cd03233 83 GEIIYVSEEDVHFPTLTVRETLDFALR---------------------------------------------------C- 110 (202)
T ss_pred ceEEEEecccccCCCCcHHHHHhhhhh---------------------------------------------------h-
Confidence 48999999888788899998742100 0
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE-ecC
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII-SHD 315 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii-SHd 315 (555)
. .++.+..|||||+||++|||||+.+|++|||||||++||+.+++.+.+.+++ .+.|+|++ +|+
T Consensus 111 ------~-----~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~ 179 (202)
T cd03233 111 ------K-----GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQA 179 (202)
T ss_pred ------c-----cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 0 2456789999999999999999999999999999999999999999888753 25666655 566
Q ss_pred HHHHHhhcceeEEecCCeEe
Q 008750 316 RAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~ 335 (555)
.+.+..+||+|++|++|++.
T Consensus 180 ~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 180 SDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred HHHHHHhCCeEEEEECCEEE
Confidence 78998999999999999874
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=299.47 Aligned_cols=158 Identities=28% Similarity=0.465 Sum_probs=133.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
|+++|++++|+++++|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+.. ..+
T Consensus 1 l~~~~l~~~~~~~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~------------~~~ 68 (163)
T cd03216 1 LELRGITKRFGGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVS------------FAS 68 (163)
T ss_pred CEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECC------------cCC
Confidence 47899999998889999999999999999999999999999999999999999999999864221 001
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
..+.. -..+++ +
T Consensus 69 ~~~~~------------------------------------------------------------~~~i~~--------~ 80 (163)
T cd03216 69 PRDAR------------------------------------------------------------RAGIAM--------V 80 (163)
T ss_pred HHHHH------------------------------------------------------------hcCeEE--------E
Confidence 10000 000111 1
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++++ .+.|+|++|||++++..+||++++|++|++
T Consensus 81 ~qLS~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i 160 (163)
T cd03216 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRV 160 (163)
T ss_pred EecCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 23999999999999999999999999999999999999999988753 488999999999999999999999999986
Q ss_pred e
Q 008750 335 R 335 (555)
Q Consensus 335 ~ 335 (555)
.
T Consensus 161 ~ 161 (163)
T cd03216 161 V 161 (163)
T ss_pred E
Confidence 4
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=320.48 Aligned_cols=183 Identities=26% Similarity=0.395 Sum_probs=151.0
Q ss_pred EEeCC-ceeeeeeeEEEE-----CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccH
Q 008750 105 KSYKG-VTVLKDVTWEVK-----KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 105 ~~y~~-~~vL~~vsl~i~-----~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv 178 (555)
|+|++ ...++|++|++. +||+++|+|+||||||||+++|+|+++|++|+|.++|. .|+|++|++...+..||
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~--~i~~~~q~~~~~~~~tv 78 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD--TVSYKPQYIKADYEGTV 78 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc--eEEEecccccCCCCCCH
Confidence 34532 346777777776 79999999999999999999999999999999999875 79999999887778899
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
.+++...... .. .....+.++++.+|+. ...++++.
T Consensus 79 ~e~l~~~~~~-----------------------------------------~~--~~~~~~~~~l~~l~l~-~~~~~~~~ 114 (246)
T cd03237 79 RDLLSSITKD-----------------------------------------FY--THPYFKTEIAKPLQIE-QILDREVP 114 (246)
T ss_pred HHHHHHHhhh-----------------------------------------cc--ccHHHHHHHHHHcCCH-HHhhCChh
Confidence 9987421100 00 0011245567778886 45688899
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
+|||||||||+||+||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||+|++|+++.
T Consensus 115 ~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 115 ELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999999999999999999998887754 48999999999999999999999997653
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-38 Score=319.13 Aligned_cols=208 Identities=25% Similarity=0.352 Sum_probs=158.2
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
+..+.|+++|+++. ++++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++| .|+|++|++.+
T Consensus 35 ~~~~~l~i~nls~~--~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g---~i~yv~q~~~l 109 (282)
T cd03291 35 SDDNNLFFSNLCLV--GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG---RISFSSQFSWI 109 (282)
T ss_pred CCCCeEEEEEEEEe--cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC---EEEEEeCcccc
Confidence 34566999999985 46799999999999999999999999999999999999999999999986 59999999877
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-cc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-AD 251 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~ 251 (555)
+. .||.+|+....... . .... ..+. .. .+ ...+..+... ..
T Consensus 110 ~~-~tv~enl~~~~~~~-~--~~~~---~~l~------------------------~~---~l----~~~l~~~~~~~~~ 151 (282)
T cd03291 110 MP-GTIKENIIFGVSYD-E--YRYK---SVVK------------------------AC---QL----EEDITKFPEKDNT 151 (282)
T ss_pred cc-cCHHHHhhcccccC-H--HHHH---HHHH------------------------Hh---CC----HHHHHhccccccc
Confidence 54 59999986421100 0 0000 0000 00 00 1111111110 01
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-Hc--CCCceEEEEecCHHHHHhhcceeEE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LG--KQDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l~--~~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
..++.+.+||||||||++|||||+.+|++|||||||++||+.++..+.+. +. ..+.|||+||||++++. .||+|++
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~-~~d~i~~ 230 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILI 230 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHH-hCCEEEE
Confidence 23455679999999999999999999999999999999999999988764 32 24789999999999985 7999999
Q ss_pred ecCCeEeeccCChHHHH
Q 008750 329 TEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 329 l~~G~~~~~~G~y~~~~ 345 (555)
|++|++. +.|...++.
T Consensus 231 l~~G~i~-~~g~~~~~~ 246 (282)
T cd03291 231 LHEGSSY-FYGTFSELQ 246 (282)
T ss_pred EECCEEE-EECCHHHHH
Confidence 9999974 567766654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=354.61 Aligned_cols=191 Identities=26% Similarity=0.380 Sum_probs=166.1
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
..++|+++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.++ ..++|++|++.+.
T Consensus 337 ~~~~l~~~~ls~~~~~~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~---~~i~y~~Q~~~~~ 412 (590)
T PRK13409 337 RETLVEYPDLTKKLGDF-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE---LKISYKPQYIKPD 412 (590)
T ss_pred CceEEEEcceEEEECCE-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe---eeEEEecccccCC
Confidence 34679999999999775 5999999999999999999999999999999999999999999986 5799999998877
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..||.+++..... ... ....+.++++.+|+. ...
T Consensus 413 ~~~tv~e~l~~~~~-----------------------------------------~~~---~~~~~~~~L~~l~l~-~~~ 447 (590)
T PRK13409 413 YDGTVEDLLRSITD-----------------------------------------DLG---SSYYKSEIIKPLQLE-RLL 447 (590)
T ss_pred CCCcHHHHHHHHhh-----------------------------------------hcC---hHHHHHHHHHHCCCH-HHH
Confidence 88999998753210 000 012346678889996 567
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEe
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .+.|||+||||++++..+||||++|
T Consensus 448 ~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl 527 (590)
T PRK13409 448 DKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVF 527 (590)
T ss_pred hCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 4899999999999999999999999
Q ss_pred cCCeE
Q 008750 330 EMGVS 334 (555)
Q Consensus 330 ~~G~~ 334 (555)
++ +.
T Consensus 528 ~~-~~ 531 (590)
T PRK13409 528 EG-EP 531 (590)
T ss_pred cC-cc
Confidence 75 44
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-39 Score=352.18 Aligned_cols=206 Identities=19% Similarity=0.324 Sum_probs=167.2
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~i 163 (555)
+++|+++|+++.| +++|+||||+|++||++||+|+||||||||+++|+|+.+|++|+|.++|.+. .+
T Consensus 248 ~~~i~~~~l~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 325 (491)
T PRK10982 248 EVILEVRNLTSLR--QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGF 325 (491)
T ss_pred CcEEEEeCccccc--CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCC
Confidence 4579999999974 4699999999999999999999999999999999999999999999987432 28
Q ss_pred EEEecccc---cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++. ++...|+.+|..... +.. .... .........+..+.
T Consensus 326 ~~~~q~~~~~~~~~~~~~~~~~~~~~---~~~---------~~~~---------------------~~~~~~~~~~~~~~ 372 (491)
T PRK10982 326 ALVTEERRSTGIYAYLDIGFNSLISN---IRN---------YKNK---------------------VGLLDNSRMKSDTQ 372 (491)
T ss_pred EEcCCchhhCCcccCCcHHHheehhh---hhh---------hccc---------------------ccccCcHHHHHHHH
Confidence 99999853 556678777632100 000 0000 00001112345677
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~ 317 (555)
++++.+++.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.+++ .+.|.|||+||||++
T Consensus 373 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~ 452 (491)
T PRK10982 373 WVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMP 452 (491)
T ss_pred HHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChH
Confidence 88899998644579999999999999999999999999999999999999999999998877 456999999999999
Q ss_pred HHHhhcceeEEecCCeEe
Q 008750 318 FLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~ 335 (555)
++..+||++++|++|++.
T Consensus 453 ~~~~~~d~v~~l~~g~i~ 470 (491)
T PRK10982 453 ELLGITDRILVMSNGLVA 470 (491)
T ss_pred HHHhhCCEEEEEECCEEE
Confidence 999999999999999975
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-39 Score=309.25 Aligned_cols=172 Identities=26% Similarity=0.412 Sum_probs=142.3
Q ss_pred eCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eEEEEecccc-cC
Q 008750 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KIAFLSQEFE-VS 173 (555)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ig~v~Q~~~-~~ 173 (555)
|+++.+|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++. ..
T Consensus 2 ~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 81 (190)
T TIGR01166 2 PGGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQL 81 (190)
T ss_pred CCccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhcc
Confidence 3566799999999999999999999999999999999999999999999987431 4899999974 33
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~ 253 (555)
+..|+.+|+...... . ........+++.++++.+|+. ...
T Consensus 82 ~~~tv~~nl~~~~~~---------------~------------------------~~~~~~~~~~~~~~l~~~~l~-~~~ 121 (190)
T TIGR01166 82 FAADVDQDVAFGPLN---------------L------------------------GLSEAEVERRVREALTAVGAS-GLR 121 (190)
T ss_pred ccccHHHHHHHHHHH---------------c------------------------CCCHHHHHHHHHHHHHHcCch-hhh
Confidence 567999987532100 0 001112234567788889986 457
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
++++.+||||||||++|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||+++
T Consensus 122 ~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 122 ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred hCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 889999999999999999999999999999999999999999999988753 48899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=352.97 Aligned_cols=213 Identities=20% Similarity=0.311 Sum_probs=171.7
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.+.++++|+++. .+|+|+||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..+
T Consensus 255 ~~~l~~~~~~~~----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 330 (501)
T PRK11288 255 EVRLRLDGLKGP----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGI 330 (501)
T ss_pred CcEEEEeccccC----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCC
Confidence 346899999842 58999999999999999999999999999999999999999999998742 258
Q ss_pred EEEecccc---cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEFE---VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~~---~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++. +++..|+.+|+........ .... . ..........+.
T Consensus 331 ~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~-------------~~~~----~----------------~~~~~~~~~~~~ 377 (501)
T PRK11288 331 MLCPEDRKAEGIIPVHSVADNINISARRHH-------------LRAG----C----------------LINNRWEAENAD 377 (501)
T ss_pred EEcCcCHhhCCCcCCCCHHHHhccccchhh-------------cccc----c----------------ccChHHHHHHHH
Confidence 99999974 6677899999753210000 0000 0 000011134567
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~ 317 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||+|||+.+++.+.++| .+.|.|||+||||++
T Consensus 378 ~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~ 457 (501)
T PRK11288 378 RFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLP 457 (501)
T ss_pred HHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 88999999545679999999999999999999999999999999999999999999998876 456899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+||++++|++|++ .+.|..+++.
T Consensus 458 ~~~~~~d~i~~l~~g~i-~~~~~~~~~~ 484 (501)
T PRK11288 458 EVLGVADRIVVMREGRI-AGELAREQAT 484 (501)
T ss_pred HHHhhCCEEEEEECCEE-EEEEccccCC
Confidence 99999999999999986 4566555443
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=350.28 Aligned_cols=239 Identities=28% Similarity=0.396 Sum_probs=170.6
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~ 126 (555)
+......+...+.+..+.+++++....+..... ..... ....+.|+++||+|+|++ +++|+|+||+|++|+++
T Consensus 277 l~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~---~~~~~--~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~ 351 (529)
T TIGR02857 277 LRQLGADYHARADGVAAAEALFAVLDAPRPLAG---KAPVT--AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERV 351 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC---CcCCC--CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEE
Confidence 344444455677777777777665432211110 00000 011235999999999975 46999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
+|+|+||||||||+++|+|+++|++|+|.++|.+. .|+||+|++.+ |+.|++||+..+.... . .
T Consensus 352 ~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~l-f~~ti~~Ni~~~~~~~-~----~ 425 (529)
T TIGR02857 352 ALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFL-FAGTIAENIRLARPDA-S----D 425 (529)
T ss_pred EEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcc-cCcCHHHHHhccCCCC-C----H
Confidence 99999999999999999999999999999998653 59999999987 5689999986532100 0 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
+.+...++ . ..+...+.++-+ |++.. ......+||||||||++|||||+.
T Consensus 426 ~~i~~a~~------------------------~---~~l~~~i~~lp~--Gldt~-v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 426 AEIRRALE------------------------R---AGLDEFVAALPQ--GLDTL-IGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred HHHHHHHH------------------------H---cCcHHHHHhCcc--cccch-hccccccCCHHHHHHHHHHHHHhc
Confidence 00000000 0 011111111111 23221 223346899999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
+|++|||||||++||+.+.+.+.+.+.+ .++|+|+||||++.+. .||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAE-RADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHH-hCCEEEeC
Confidence 9999999999999999999999988865 5799999999999985 69999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=383.35 Aligned_cols=257 Identities=21% Similarity=0.295 Sum_probs=185.3
Q ss_pred hhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-C-ceeeeeeeEEEECCCEEEEE
Q 008750 52 ATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-G-VTVLKDVTWEVKKGEKVGLV 129 (555)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~-~~vL~~vsl~i~~Ge~~~lv 129 (555)
....+.+.+.+..+++|+++....+.+..........+...+..+.|+++||+|+|+ + .++|+||||+|++||++|||
T Consensus 1189 l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIV 1268 (1495)
T PLN03232 1189 VLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVV 1268 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEE
Confidence 334445567777888887766543322111000000000012235699999999994 3 47999999999999999999
Q ss_pred cCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 130 GVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 130 G~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
|+||||||||+++|.|+++|++|+|.+||.+. +|+||||++.+ |+.|+++|+...- + .. .+++
T Consensus 1269 G~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~L-F~gTIr~NL~~~~-~-~s----deei 1341 (1495)
T PLN03232 1269 GRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVL-FSGTVRFNIDPFS-E-HN----DADL 1341 (1495)
T ss_pred CCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCee-eCccHHHHcCCCC-C-CC----HHHH
Confidence 99999999999999999999999999999753 59999999988 5679999985321 0 00 0011
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
.+.++. . .+...+..+- .|++... .....+||||||||++|||||+++|+
T Consensus 1342 ~~al~~------------------------a---~l~~~I~~lp--~GLdt~v-~e~G~~LSgGQrQrlaLARALLr~~~ 1391 (1495)
T PLN03232 1342 WEALER------------------------A---HIKDVIDRNP--FGLDAEV-SEGGENFSVGQRQLLSLARALLRRSK 1391 (1495)
T ss_pred HHHHHH------------------------c---CCHHHHHhCc--CCCCcee-cCCCCCCCHHHHHHHHHHHHHHhCCC
Confidence 111110 0 1111122111 1444322 33346899999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|+++. .|++++.+..
T Consensus 1392 ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE-~Gt~~eLl~~ 1459 (1495)
T PLN03232 1392 ILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLE-YDSPQELLSR 1459 (1495)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHhC
Confidence 9999999999999999999998865 48999999999999986 99999999999865 5788776643
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=350.51 Aligned_cols=230 Identities=26% Similarity=0.359 Sum_probs=160.0
Q ss_pred hhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEE
Q 008750 50 SAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGL 128 (555)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~l 128 (555)
.....-+...+.+..+.+++.+....+.+.... ..+...........|+++||+|+|++ +++|+|+||+|++|+++||
T Consensus 288 ~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~-~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaI 366 (529)
T TIGR02868 288 APLPAAAQALTRVRAAAERIEEVTGAKGPRPEG-VVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAI 366 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCCC-CCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEE
Confidence 333334455666777777766654333211110 00000000112345999999999975 5699999999999999999
Q ss_pred EcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 129 VGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 129 vG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
||+||||||||+++|+|+++|++|+|.++|.+. .|+||||++.+ |+.|++||+..+..+.. .+++
T Consensus 367 vG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~~~~lr~~i~~V~Q~~~l-F~~TI~eNI~~g~~~~~-----~e~i 440 (529)
T TIGR02868 367 LGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSLQDELRRRISVFAQDAHL-FDTTVRDNLRLGRPDAT-----DEEL 440 (529)
T ss_pred ECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhHHHHHHhheEEEccCccc-ccccHHHHHhccCCCCC-----HHHH
Confidence 999999999999999999999999999998653 59999999988 78899999975421000 0001
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
.+.++. . .+.+.+..+-+ |++....+ .-..||||||||++|||||+.+|+
T Consensus 441 ~~al~~------------------------a---~l~~~i~~lp~--GldT~ige-~G~~LSGGQrQRiaiARall~~~~ 490 (529)
T TIGR02868 441 WAALER------------------------V---GLADWLRSLPD--GLDTVLGE-GGARLSGGERQRLALARALLADAP 490 (529)
T ss_pred HHHHHH------------------------c---CCHHHHHhCcc--cccchhcc-ccCcCCHHHHHHHHHHHHHhcCCC
Confidence 111110 0 11111111111 33322222 235799999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDR 316 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~ 316 (555)
|||||||||+||+++++.+.+.+.+ .++|+|+|||++
T Consensus 491 iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 491 ILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999998865 479999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=382.36 Aligned_cols=251 Identities=22% Similarity=0.303 Sum_probs=181.4
Q ss_pred HHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCcc
Q 008750 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAG 135 (555)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsG 135 (555)
.+..++.+++|+.+....+.+.............-+..+.|+++||+|+|.+ .++|+||||+|++||++||||++|||
T Consensus 1198 ~~e~~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSG 1277 (1622)
T PLN03130 1198 LAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAG 1277 (1622)
T ss_pred HHHHHHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCC
Confidence 4566777777776543322211100000000000123456999999999953 36999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhh
Q 008750 136 KTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205 (555)
Q Consensus 136 KSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (555)
||||+++|.|+++|++|+|.+||.++ +|++|||++.+ |+.||++|+.... + . .-+++.+.++.
T Consensus 1278 KSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~L-F~GTIreNLd~~~-~-~----tdeei~~Al~~ 1350 (1622)
T PLN03130 1278 KSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVL-FSGTVRFNLDPFN-E-H----NDADLWESLER 1350 (1622)
T ss_pred HHHHHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCcc-ccccHHHHhCcCC-C-C----CHHHHHHHHHH
Confidence 99999999999999999999999753 59999999988 5779999985321 0 0 00011111110
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcC
Q 008750 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDE 285 (555)
Q Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDE 285 (555)
..+...+..+- .|++... .....+||||||||++|||||+++|+||||||
T Consensus 1351 ---------------------------a~l~~~I~~lp--~GLdt~V-ge~G~nLSgGQrQrlaLARALLr~p~ILILDE 1400 (1622)
T PLN03130 1351 ---------------------------AHLKDVIRRNS--LGLDAEV-SEAGENFSVGQRQLLSLARALLRRSKILVLDE 1400 (1622)
T ss_pred ---------------------------cCcHHHHHhCc--cccCccc-cCCCCCCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 01111122211 2444332 23345899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 286 PTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 286 PTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||+||.++.+.+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|++.. .|++.+.+..
T Consensus 1401 ATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE-~Gt~~eLl~~ 1462 (1622)
T PLN03130 1401 ATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVE-FDTPENLLSN 1462 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEE-eCCHHHHHhC
Confidence 9999999999999998865 48999999999999976 99999999999854 4777776643
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=349.67 Aligned_cols=209 Identities=20% Similarity=0.334 Sum_probs=169.8
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
.+.|+++|+++ ++|+|+||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|.+ ..|
T Consensus 255 ~~~l~~~~l~~-----~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i 329 (501)
T PRK10762 255 EVRLKVDNLSG-----PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGI 329 (501)
T ss_pred CcEEEEeCccc-----CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCC
Confidence 35799999985 37999999999999999999999999999999999999999999998743 248
Q ss_pred EEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
||++|++ .+++..||.+|+....... .... . ..........++.
T Consensus 330 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~-------------~~~~------~--------------~~~~~~~~~~~~~ 376 (501)
T PRK10762 330 VYISEDRKRDGLVLGMSVKENMSLTALRY-------------FSRA------G--------------GSLKHADEQQAVS 376 (501)
T ss_pred EEecCccccCCCcCCCcHHHHhhhhhhhh-------------hccc------c--------------cccCHHHHHHHHH
Confidence 9999996 4667789999985321000 0000 0 0000112234577
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 377 ~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~ 456 (501)
T PRK10762 377 DFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMP 456 (501)
T ss_pred HHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHH
Confidence 8899999954467899999999999999999999999999999999999999999999888753 5889999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
++..+||+|++|++|++. +.|...
T Consensus 457 ~~~~~~d~v~~l~~G~i~-~~~~~~ 480 (501)
T PRK10762 457 EVLGMSDRILVMHEGRIS-GEFTRE 480 (501)
T ss_pred HHHhhCCEEEEEECCEEE-EEeccc
Confidence 999999999999999874 444433
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=289.77 Aligned_cols=144 Identities=51% Similarity=0.847 Sum_probs=133.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
|+++|+++.|++.++|+++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|. ..++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-~~i~~~~~--------- 70 (144)
T cd03221 1 IELENLSKTYGGKLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-VKIGYFEQ--------- 70 (144)
T ss_pred CEEEEEEEEECCceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-EEEEEEcc---------
Confidence 47899999998878999999999999999999999999999999999999999999999863 23444331
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
T Consensus 71 -------------------------------------------------------------------------------- 70 (144)
T cd03221 71 -------------------------------------------------------------------------------- 70 (144)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
||+||+||++|||||+.+|+++||||||++||+.++..+.+.+++.+.|+|++||+++++..+||++++|++|+
T Consensus 71 --lS~G~~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 71 --LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 89999999999999999999999999999999999999999998878899999999999999999999999884
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=348.90 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=166.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCC-----------ce
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-----------MK 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~-----------~~ 162 (555)
.++|+++|+++.|+++.+|+|+||+|++||++||+|+||||||||+|+|+|+.+| ++|+|.++|.+ ..
T Consensus 258 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 258 EPRIVLNNGVVSYNDRPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred CceEEEeceEEEECCeeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 4679999999999888899999999999999999999999999999999998876 79999998742 24
Q ss_pred EEEEecccccCcC--ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 163 IAFLSQEFEVSMS--RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 163 ig~v~Q~~~~~~~--~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
|+|++|++.+++. .++.+++...+... . ... .........++.
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-------------~-~~~---------------------~~~~~~~~~~~~ 382 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDS-------------I-GIY---------------------QAVSDRQQKLAQ 382 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccc-------------c-ccc---------------------cCCCHHHHHHHH
Confidence 8999998765432 45655543211000 0 000 000011234677
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CC-ceEEEEecCH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD-VPMVIISHDR 316 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~-~tvIiiSHd~ 316 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .+ .|||+||||+
T Consensus 383 ~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~ 462 (490)
T PRK10938 383 QWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA 462 (490)
T ss_pred HHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch
Confidence 8899999975367899999999999999999999999999999999999999999999988753 34 5799999999
Q ss_pred HHHHh-hcceeEEecCCeEeec
Q 008750 317 AFLDQ-LCTKIVETEMGVSRTY 337 (555)
Q Consensus 317 ~~l~~-~~dri~~l~~G~~~~~ 337 (555)
+++.. +||++++|++|+++.+
T Consensus 463 ~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 463 EDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred hhhhhhhheeEEEecCCceEEe
Confidence 99987 5999999999997654
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-40 Score=300.85 Aligned_cols=211 Identities=28% Similarity=0.375 Sum_probs=177.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+|+++||+++|+++.+++++|++|++|.+++|||||||||||||.+++.++++++|+|.++|.+. +++.+
T Consensus 1 MI~i~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred CeeehhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999998653 47888
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
-|+......+||++-+.++-.+. + +.-...+-...++++++.+
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPY---------------S----------------------qGRlt~eD~~~I~~aieyl 123 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPY---------------S----------------------QGRLTKEDRRIINEAIEYL 123 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcc---------------c----------------------CCCCchHHHHHHHHHHHHh
Confidence 88888878889998775431100 0 0001122244577788888
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhh
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~ 322 (555)
+|. +..+|+..+||||||||..||.+|+++.+.++||||.|+||......+.+.|+ +.|+|+|+|-||++|+..+
T Consensus 124 ~L~-~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~Y 202 (252)
T COG4604 124 HLE-DLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCY 202 (252)
T ss_pred ccc-chHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhh
Confidence 886 56799999999999999999999999999999999999999987666666554 5799999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|+|+-|++|++ +..|..++...
T Consensus 203 sD~IVAlK~G~v-v~~G~~~eii~ 225 (252)
T COG4604 203 SDHIVALKNGKV-VKQGSPDEIIQ 225 (252)
T ss_pred hhheeeecCCEE-EecCCHHHhcC
Confidence 999999999996 67888776654
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-38 Score=349.65 Aligned_cols=206 Identities=18% Similarity=0.308 Sum_probs=168.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~i 163 (555)
+++|+++|+++ .+|+||||+|++|+++||+|+||||||||+|+|+|+++|++|+|.++|.+ ..|
T Consensus 266 ~~~l~~~~l~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i 340 (510)
T PRK15439 266 APVLTVEDLTG-----EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGL 340 (510)
T ss_pred CceEEEeCCCC-----CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCc
Confidence 45799999984 26999999999999999999999999999999999999999999998742 258
Q ss_pred EEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 164 AFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
+|++|++ .+++..|+.+|+........ .. ..........+.
T Consensus 341 ~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~-------------~~-----------------------~~~~~~~~~~~~ 384 (510)
T PRK15439 341 VYLPEDRQSSGLYLDAPLAWNVCALTHNRR-------------GF-----------------------WIKPARENAVLE 384 (510)
T ss_pred EECCCChhhCCccCCCcHHHHHHhhhhhhh-------------cc-----------------------ccChHHHHHHHH
Confidence 9999985 36667899888742100000 00 000011234577
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+.....++++.+|||||||||+|||||+.+|+||||||||++||+.+++.+.+.|++ .|.|||+||||++
T Consensus 385 ~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~ 464 (510)
T PRK15439 385 RYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLE 464 (510)
T ss_pred HHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHH
Confidence 8899999963467899999999999999999999999999999999999999999999988753 5899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
++.++||+|++|++|++. +.|..+
T Consensus 465 ~i~~~~d~i~~l~~G~i~-~~~~~~ 488 (510)
T PRK15439 465 EIEQMADRVLVMHQGEIS-GALTGA 488 (510)
T ss_pred HHHHhCCEEEEEECCEEE-EEEccc
Confidence 999999999999999874 445443
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-39 Score=306.94 Aligned_cols=208 Identities=31% Similarity=0.426 Sum_probs=171.0
Q ss_pred CCCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------c
Q 008750 93 SISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------M 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~ 161 (555)
..++.|+++||++.|+++++|+||||+|++||.|+|+|+|||||||||++++|.++|++|.+.+.|.. .
T Consensus 27 ~~~~li~l~~v~v~r~gk~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk 106 (257)
T COG1119 27 INEPLIELKNVSVRRNGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRK 106 (257)
T ss_pred CCcceEEecceEEEECCEeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHH
Confidence 34577999999999999999999999999999999999999999999999999999999999877642 2
Q ss_pred eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 ~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
+||||+-... +..+.+|+|.+..++.....++ +..-......++
T Consensus 107 ~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y----------------------------------~~~~~~~~~~~a 152 (257)
T COG1119 107 RIGLVSSELHERFRVRETVRDVVLSGFFASIGIY----------------------------------QEDLTAEDLAAA 152 (257)
T ss_pred HhCccCHHHHhhcccccccceeeeeccccccccc----------------------------------ccCCCHHHHHHH
Confidence 5899885532 3345677777665542111000 000011234567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-----CCceEEEEec
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-----~~~tvIiiSH 314 (555)
..+++.+|+.+ ..++++.+||-||||||.|||||+.+|.+|||||||++||...++.|.+.|.+ .+.++|+|||
T Consensus 153 ~~lle~~g~~~-la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtH 231 (257)
T COG1119 153 QWLLELLGAKH-LADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTH 231 (257)
T ss_pred HHHHHHcchhh-hccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEc
Confidence 88899999974 78999999999999999999999999999999999999999999888887753 3678999999
Q ss_pred CHHHHHhhcceeEEecCCeEe
Q 008750 315 DRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~ 335 (555)
..+++....++++.+.+|+++
T Consensus 232 h~eEi~~~~th~lll~~g~v~ 252 (257)
T COG1119 232 HAEEIPPCFTHRLLLKEGEVV 252 (257)
T ss_pred chhhcccccceEEEeeCCcee
Confidence 999999999999999999863
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=291.43 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=169.5
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEe
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLS 167 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~ 167 (555)
++++++.+.-++.++|+++||++.+||+++|+||+|||||||+|+++.+++|++|++.|.|.+. .|+|+.
T Consensus 4 le~kq~~y~a~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~ 83 (223)
T COG4619 4 LELKQVGYLAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83 (223)
T ss_pred hHHHHHHhhcCCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHH
Confidence 5667776666788999999999999999999999999999999999999999999999999764 589999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|.|.+ |..||.+|+..+..- .+ ..--...+..+|..++
T Consensus 84 Q~paL-fg~tVeDNlifP~~~---------------r~--------------------------rr~dr~aa~~llar~~ 121 (223)
T COG4619 84 QTPAL-FGDTVEDNLIFPWQI---------------RN--------------------------RRPDRAAALDLLARFA 121 (223)
T ss_pred cCccc-cccchhhccccchHH---------------hc--------------------------cCCChHHHHHHHHHcC
Confidence 99988 678999998654310 00 1112345677889999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~ 323 (555)
+++..+++.+.+|||||+||++|+|-|..-|+|||||||||+||+.+.+.+.+++ +.....++.||||....-+.+
T Consensus 122 l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha 201 (223)
T COG4619 122 LPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHA 201 (223)
T ss_pred CchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhh
Confidence 9999999999999999999999999999999999999999999999988887766 456899999999999988899
Q ss_pred ceeEEecCCeE
Q 008750 324 TKIVETEMGVS 334 (555)
Q Consensus 324 dri~~l~~G~~ 334 (555)
|++|-+..|+.
T Consensus 202 ~k~itl~~G~~ 212 (223)
T COG4619 202 DKVITLQPGHA 212 (223)
T ss_pred heEEEeccCcc
Confidence 99999999875
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=346.34 Aligned_cols=239 Identities=19% Similarity=0.265 Sum_probs=172.8
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccC---cchhhhhhcccccCC--CCCCCCCccEEEEeEEEEeCCc-----eeeeee
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSS---ADEFENKKYSNKQSN--TGASSISSGVKLENISKSYKGV-----TVLKDV 116 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~--~~~~~~~~~i~l~nls~~y~~~-----~vL~~v 116 (555)
.++......+...+.+..+.+++.+.. .++............ .........|+++||+|+|++. ++|+|+
T Consensus 282 ~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~v 361 (555)
T TIGR01194 282 GPLEMLVSALPILAQAQIACQRLADFGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPI 361 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccc
Confidence 355556666667788888888877763 221110000000000 0000123459999999999752 599999
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF 186 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~ 186 (555)
||+|++|++++|+|+||||||||+++|+|+++|++|+|.++|.+. .++||+|++.+ |+.|+++|.....
T Consensus 362 s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~l-f~~ti~~n~~~~~ 440 (555)
T TIGR01194 362 DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHL-FDDLIGPDEGEHA 440 (555)
T ss_pred eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhh-hhhhhhcccccch
Confidence 999999999999999999999999999999999999999998643 48999999876 5667777631000
Q ss_pred HHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc-----cCCCCCCCC
Q 008750 187 KEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-----GDRLVASFS 261 (555)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-----~~~~~~~LS 261 (555)
.++++.++++.+++.... .......||
T Consensus 441 ------------------------------------------------~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS 472 (555)
T TIGR01194 441 ------------------------------------------------SLDNAQQYLQRLEIADKVKIEDGGFSTTTALS 472 (555)
T ss_pred ------------------------------------------------hHHHHHHHHHHcCCchhhcccccccCCcccCC
Confidence 011122233333332110 011136899
Q ss_pred hHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 262 GGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
||||||++|||||+.+|++|||||||++||+.+++.+.+.+ +..++|+|+|||+++.+. .||+|++|++|++.
T Consensus 473 gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~-~~d~i~~l~~G~i~ 549 (555)
T TIGR01194 473 TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFE-LADQIIKLAAGCIV 549 (555)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999887643 245899999999999875 79999999999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=376.87 Aligned_cols=208 Identities=26% Similarity=0.411 Sum_probs=178.9
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eE
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~i 163 (555)
..+|+++||+|.|++ +.+|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~~~~r~~I 2014 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQNM 2014 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchHHHHhhhE
Confidence 456999999999975 5799999999999999999999999999999999999999999999998542 49
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||+||++.+++.+|++|++..... +. .+...+.++.+.+++
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~---------------l~------------------------g~~~~~~~~~v~~lL 2055 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYAR---------------LR------------------------GVPAEEIEKVANWSI 2055 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHH---------------hc------------------------CCCHHHHHHHHHHHH
Confidence 999999988888999998753110 00 011122345677889
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+||. ...++++.+|||||||||+||+||+.+|+||||||||+|||+.+++.+++.|+ +.|+|||++||+++++.
T Consensus 2056 e~lgL~-~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e 2134 (2272)
T TIGR01257 2056 QSLGLS-LYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECE 2134 (2272)
T ss_pred HHcCCH-HHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 999996 46799999999999999999999999999999999999999999999999874 35899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
.+||||++|++|++. +.|+..+
T Consensus 2135 ~lcDrV~IL~~G~i~-~~Gs~q~ 2156 (2272)
T TIGR01257 2135 ALCTRLAIMVKGAFQ-CLGTIQH 2156 (2272)
T ss_pred HhCCEEEEEECCEEE-EECCHHH
Confidence 999999999999874 5676543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-38 Score=377.86 Aligned_cols=260 Identities=23% Similarity=0.275 Sum_probs=187.2
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+.....++.+++|+.+....+.+..........+..-+..+.|+++||+|+|+. .++|+||||+|++||+
T Consensus 1235 ~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~Gek 1314 (1522)
T TIGR00957 1235 YLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEK 1314 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCE
Confidence 34444455566777888888877765433221100000000000123456999999999964 4699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||++|||||||+++|.|+++|++|+|.+||.++ +|+||||++.+ |+.|+++|+.. +.+ ..
T Consensus 1315 iaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~L-F~gTIr~NLdp-~~~-~s---- 1387 (1522)
T TIGR00957 1315 VGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVL-FSGSLRMNLDP-FSQ-YS---- 1387 (1522)
T ss_pred EEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcc-cCccHHHHcCc-ccC-CC----
Confidence 999999999999999999999999999999999753 59999999988 56799999841 100 00
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
-+++...++ .. .+...+..+- -|++... .....+||||||||++|||||+
T Consensus 1388 deei~~al~------------------------~a---~l~~~I~~lp--~GLdt~v-~e~G~~LSgGQrQrl~LARALL 1437 (1522)
T TIGR00957 1388 DEEVWWALE------------------------LA---HLKTFVSALP--DKLDHEC-AEGGENLSVGQRQLVCLARALL 1437 (1522)
T ss_pred HHHHHHHHH------------------------Hc---CcHHHHhhCc--cCCCcee-cCCCCcCCHHHHHHHHHHHHHH
Confidence 000111111 00 1111122211 1444332 2234579999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++|+|||||||||+||.++...+.+.|++ .++|+|+|+|+++.+.. ||+|++|++|+++. .|++.+.+.
T Consensus 1438 r~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~-~DrIlVld~G~IvE-~G~~~eLl~ 1508 (1522)
T TIGR00957 1438 RKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMD-YTRVIVLDKGEVAE-FGAPSNLLQ 1508 (1522)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHh-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 99999999999999999999999999865 48999999999999975 89999999999865 477766654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=350.30 Aligned_cols=244 Identities=16% Similarity=0.275 Sum_probs=180.1
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhc----ccccC-------------C--CC-CCCCCccEEEEeEEEE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKY----SNKQS-------------N--TG-ASSISSGVKLENISKS 106 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------~--~~-~~~~~~~i~l~nls~~ 106 (555)
..+......+..++++.+..+|+++..+.+.+.... ...+. . .. .......|+++||++.
T Consensus 381 ~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~ 460 (659)
T TIGR00954 381 DALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLV 460 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEE
Confidence 344555556677888888888887776443221100 00000 0 00 0012356999999999
Q ss_pred eC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHh
Q 008750 107 YK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 107 y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
|+ ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.+++ ...++|++|++.++.. |++||+..+
T Consensus 461 ~~~~~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-~~~i~~v~Q~~~l~~~-tv~eni~~~ 538 (659)
T TIGR00954 461 TPNGDVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-KGKLFYVPQRPYMTLG-TLRDQIIYP 538 (659)
T ss_pred CCCCCeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-CCcEEEECCCCCCCCc-CHHHHHhcC
Confidence 95 56799999999999999999999999999999999999999999999875 3479999999987554 999998643
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC---------C
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR---------L 256 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~---------~ 256 (555)
.... . .. .....++++.++++.+|+.. ..++ .
T Consensus 539 ~~~~-~-----------~~--------------------------~~~~~~~~i~~~l~~~~l~~-~~~~~~g~~~~~~~ 579 (659)
T TIGR00954 539 DSSE-D-----------MK--------------------------RRGLSDKDLEQILDNVQLTH-ILEREGGWSAVQDW 579 (659)
T ss_pred CChh-h-----------hh--------------------------ccCCCHHHHHHHHHHcCCHH-HHhhcCCccccccc
Confidence 2100 0 00 00001123344444455432 1122 2
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
..+||||||||++|||||+.+|++|||||||++||+.+++++.+.+++.+.|+|+||||++++ ..||+|++|+.+
T Consensus 580 ~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~~~tvI~isH~~~~~-~~~d~il~l~~~ 654 (659)
T TIGR00954 580 MDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGITLFSVSHRKSLW-KYHEYLLYMDGR 654 (659)
T ss_pred ccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHcCCEEEEEeCchHHH-HhCCEEEEEeCC
Confidence 478999999999999999999999999999999999999999999988899999999999998 579999999743
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=320.67 Aligned_cols=243 Identities=24% Similarity=0.371 Sum_probs=175.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
++-.+...|++...++.+-.|+-+.-.+.+.... . ...+.....+.++++++.=++ ++++++|||++.+||.
T Consensus 291 Pid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~-----~-m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~ 364 (580)
T COG4618 291 PIDLAIANWKQFVAARQSYKRLNELLAELPAAAE-----R-MPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEA 364 (580)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC-----C-CCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCce
Confidence 4444555555655555555444333222221111 1 111133456999999986654 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEEecccccCcCccHHHHHHHhhHH----HHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEFMSAFKE----EME 191 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~----~~~ 191 (555)
+|||||||||||||.|+|.|..+|.+|.|.+||.+ ..|||+||+..+ |..||.||+.-.-++ ..-
T Consensus 365 lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL-F~GTIaeNIaRf~~~~d~~kIi 443 (580)
T COG4618 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL-FDGTIAENIARFGEEADPEKVI 443 (580)
T ss_pred EEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee-cCCcHHHHHHhccccCCHHHHH
Confidence 99999999999999999999999999999999854 369999999988 778999999643211 000
Q ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH
Q 008750 192 IAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271 (555)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA 271 (555)
.++++.. ..+-+..+- .|++....+ .-..||||||||++||
T Consensus 444 eAA~lAg------------------------------------vHelIl~lP--~GYdT~iG~-~G~~LSgGQRQRIaLA 484 (580)
T COG4618 444 EAARLAG------------------------------------VHELILRLP--QGYDTRIGE-GGATLSGGQRQRIALA 484 (580)
T ss_pred HHHHHcC------------------------------------hHHHHHhCc--CCccCccCC-CCCCCCchHHHHHHHH
Confidence 0111111 111111111 133332222 2358999999999999
Q ss_pred HHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHhhcceeEEecCCeEeec
Q 008750 272 KILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~ 337 (555)
|||..+|.+++||||-++||.+.+..|.+.+ ++.|+|+|+|||+++.+. .+|+|++|++|.+..|
T Consensus 485 RAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~-~~Dkilvl~~G~~~~F 552 (580)
T COG4618 485 RALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALA-SVDKILVLQDGRIAAF 552 (580)
T ss_pred HHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHh-hcceeeeecCChHHhc
Confidence 9999999999999999999999999999876 568999999999999996 6999999999987544
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-38 Score=322.86 Aligned_cols=247 Identities=23% Similarity=0.355 Sum_probs=194.3
Q ss_pred hHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCC
Q 008750 55 EKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNG 133 (555)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NG 133 (555)
-++.+|...-+.|.+|+...++++..+.+..++.. ...+.|+++||+|.| +++++|+||||++.+|+++|||||+|
T Consensus 498 ~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~pl~---~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SG 574 (790)
T KOG0056|consen 498 YYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPPLK---VTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSG 574 (790)
T ss_pred HHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCCcc---ccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCC
Confidence 34678999999999999999888777655554432 345679999999999 57899999999999999999999999
Q ss_pred ccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHHHHHHHHH
Q 008750 134 AGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKLERV 199 (555)
Q Consensus 134 sGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~~~~ 199 (555)
+||||++|+|..+++.++|.|.+||+++ .||.||||..+ |+.|+..|+..+- .++...+++.+.+
T Consensus 575 aGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvL-FNdTI~yNIryak~~AsneevyaAAkAA~I 653 (790)
T KOG0056|consen 575 AGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVL-FNDTILYNIRYAKPSASNEEVYAAAKAAQI 653 (790)
T ss_pred CchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCccee-ecceeeeheeecCCCCChHHHHHHHHHhhH
Confidence 9999999999999999999999999875 59999999877 7889988885431 2222222222222
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
+..+-. .++.++....+=|+ .|||||||||||||+++..|.
T Consensus 654 HdrIl~-----------------------------fPegY~t~VGERGL----------kLSGGEKQRVAiARtiLK~P~ 694 (790)
T KOG0056|consen 654 HDRILQ-----------------------------FPEGYNTRVGERGL----------KLSGGEKQRVAIARTILKAPS 694 (790)
T ss_pred HHHHhc-----------------------------Cchhhhhhhhhccc----------ccCCcchhhHHHHHHHhcCCc
Confidence 221110 01112222222222 699999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+++|||.||+||..+++.+...|.+ .+.|-|+|.|+++.+-. ||.|+++++|.+. ..|+..+...
T Consensus 695 iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivn-AD~ILvi~~G~Iv-ErG~HeeLl~ 761 (790)
T KOG0056|consen 695 IILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVN-ADLILVISNGRIV-ERGRHEELLK 761 (790)
T ss_pred EEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheec-ccEEEEEeCCeEe-ecCcHHHHHh
Confidence 9999999999999999999988875 58899999999999975 9999999999874 4676665554
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=304.13 Aligned_cols=191 Identities=31% Similarity=0.399 Sum_probs=154.2
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEecccccC--cCccHHHHHHHhhHHHH
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEFEVS--MSRTVREEFMSAFKEEM 190 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~~~~--~~~tv~e~~~~~~~~~~ 190 (555)
|+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..++|++|++.++ +..|+.+|+........
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~ 80 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRHIGYVPQRHEFAWDFPISVAHTVMSGRTGHI 80 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchHhhCcEEEecccccccCCCCccHHHHHHhcccccc
Confidence 5789999999999999999999999999999999999999864 3599999998663 34789988753210000
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~l 270 (555)
. .. .........++.++++.+|+. ...++++.+||||||||++|
T Consensus 81 ~----------~~-------------------------~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~l 124 (223)
T TIGR03771 81 G----------WL-------------------------RRPCVADFAAVRDALRRVGLT-ELADRPVGELSGGQRQRVLV 124 (223)
T ss_pred c----------cc-------------------------cCCcHHHHHHHHHHHHHhCCc-hhhcCChhhCCHHHHHHHHH
Confidence 0 00 000011234567788889986 45688899999999999999
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||||+.+|++|||||||++||+.+++.+.++|++ .+.|||+||||++++..+||+|+++ +|++. +.|+.+++..
T Consensus 125 aral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~-~~~~~~~~~~ 201 (223)
T TIGR03771 125 ARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVI-ADGTPQQLQD 201 (223)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEE-eecCHHHhcC
Confidence 9999999999999999999999999999988753 5889999999999999999999999 78764 6677766543
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-37 Score=371.65 Aligned_cols=212 Identities=24% Similarity=0.339 Sum_probs=164.9
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
+.|+++||+|+|++ .++|+||||+|++||++||||++|||||||+++|.|+++|++|+|.++|.++ .|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I 1386 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQF 1386 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcc
Confidence 46999999999954 3599999999999999999999999999999999999999999999999753 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+||||++.+ |+.||++|+.. +.+ .. -+++..+++. . .+...+..+-
T Consensus 1387 ~iVpQdp~L-F~gTIreNIdp-~~~-~s----deeI~~Al~~------------------------a---~l~~~I~~lp 1432 (1560)
T PTZ00243 1387 SMIPQDPVL-FDGTVRQNVDP-FLE-AS----SAEVWAALEL------------------------V---GLRERVASES 1432 (1560)
T ss_pred eEECCCCcc-ccccHHHHhCc-ccC-CC----HHHHHHHHHH------------------------C---CChHHHhhCc
Confidence 999999987 67799999842 110 00 0111111111 0 1111122111
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccC-CCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~-p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
-|++... ...-.+||||||||++|||||+.+ |+|||||||||+||.++.+.+.+.|++ .++|+|+|+|+++.+.
T Consensus 1433 --~Gldt~v-ge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~ 1509 (1560)
T PTZ00243 1433 --EGIDSRV-LEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA 1509 (1560)
T ss_pred --ccccccc-cCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH
Confidence 1333222 223358999999999999999995 899999999999999999999998864 4799999999999997
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
. ||+|++|++|++.. .|++++.+.
T Consensus 1510 ~-~DrIlVLd~G~VvE-~Gt~~eLl~ 1533 (1560)
T PTZ00243 1510 Q-YDKIIVMDHGAVAE-MGSPRELVM 1533 (1560)
T ss_pred h-CCEEEEEECCEEEE-ECCHHHHHh
Confidence 5 99999999999754 577777654
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=347.64 Aligned_cols=209 Identities=25% Similarity=0.365 Sum_probs=172.1
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC--ceEEEEcCCC------ceEEEEeccc
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD--SGNVIKAKSN------MKIAFLSQEF 170 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~--~G~I~~~g~~------~~ig~v~Q~~ 170 (555)
.++|++++|+++.+|+||||+|++||++||+|+||||||||+++|+|..+|+ +|+|.++|.+ ..+|||+|++
T Consensus 70 ~~~~l~~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~~~~~~i~yv~Q~~ 149 (659)
T PLN03211 70 KISDETRQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILKRTGFVTQDD 149 (659)
T ss_pred ccccccccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECchhhccceEEECccc
Confidence 4678899998889999999999999999999999999999999999999885 8999999854 2599999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||+|++..... +. ... .....+..++++++++.+|+.+
T Consensus 150 ~l~~~lTV~E~l~~~a~---------------~~-~~~--------------------~~~~~~~~~~v~~~l~~lgL~~ 193 (659)
T PLN03211 150 ILYPHLTVRETLVFCSL---------------LR-LPK--------------------SLTKQEKILVAESVISELGLTK 193 (659)
T ss_pred ccCCcCCHHHHHHHHHH---------------hC-CCC--------------------CCCHHHHHHHHHHHHHHcCChh
Confidence 88888999999853210 00 000 0011123456788899999964
Q ss_pred cc----cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-HHHhh
Q 008750 251 DD----GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQL 322 (555)
Q Consensus 251 ~~----~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~-~l~~~ 322 (555)
.. .++.+..|||||||||+||++|+.+|+||||||||+|||..+...+.+.|++ .|+|||++||+++ .+.++
T Consensus 194 ~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~ 273 (659)
T PLN03211 194 CENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQM 273 (659)
T ss_pred hcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHh
Confidence 21 2456788999999999999999999999999999999999999999988753 6899999999998 58889
Q ss_pred cceeEEecCCeEeeccCChHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~ 344 (555)
||+|++|++|++ .|.|+.++.
T Consensus 274 ~D~iilL~~G~i-v~~G~~~~~ 294 (659)
T PLN03211 274 FDSVLVLSEGRC-LFFGKGSDA 294 (659)
T ss_pred hceEEEecCCcE-EEECCHHHH
Confidence 999999999986 567776544
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-37 Score=298.28 Aligned_cols=187 Identities=18% Similarity=0.195 Sum_probs=145.7
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-EcCCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
.+|+||||+|++|++++|+|+||||||||+++|+|+++|++|+|. +++.... +.+.+.+++.+|+.+|+......
T Consensus 1 ~vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~---~~~~~~l~~~ltv~enl~~~~~~- 76 (213)
T PRK15177 1 VVLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP---LGANSFILPGLTGEENARMMASL- 76 (213)
T ss_pred CeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec---cccccccCCcCcHHHHHHHHHHH-
Confidence 379999999999999999999999999999999999999999997 7764332 33456676788999998532100
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
.. ....+. ...+...++++ ...++++..||||||||++
T Consensus 77 --------------~~------------------------~~~~~~---~~~~~~~~~l~-~~~~~~~~~lS~G~~qrv~ 114 (213)
T PRK15177 77 --------------YG------------------------LDGDEF---SHFCYQLTQLE-QCYTDRVSEYSVTMKTHLA 114 (213)
T ss_pred --------------cC------------------------CCHHHH---HHHHHHHhChh-HHhhchHhhcCHHHHHHHH
Confidence 00 000000 11112234554 3457888999999999999
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|||||+.+|+++||||||++||+.+...+.+.+.+ .+.|+|++|||+.++..+||+|++|++|++. +.|+..+.
T Consensus 115 la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~-~~~~~~~~ 190 (213)
T PRK15177 115 FAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKIT-MCEDLAQA 190 (213)
T ss_pred HHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEE-EeCCHHHH
Confidence 99999999999999999999999998888886632 3578999999999999999999999999974 56665443
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=286.05 Aligned_cols=216 Identities=29% Similarity=0.435 Sum_probs=182.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC-CC-----------ceE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK-SN-----------MKI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g-~~-----------~~i 163 (555)
+.++++||+++|++..+|+|+||+|.+||.-+||||||+||||++.+|+|..+|+.|+|.++| .+ ..|
T Consensus 4 ~iL~~~~vsVsF~GF~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 4 IILYLDGVSVSFGGFKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred ceEEEeceEEEEcceeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 568999999999999999999999999999999999999999999999999999999999998 32 258
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|--+|.|..+.+.||+||+..+....-.+.+. +.. . -..+-+.+++++|
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~---------------------------L~~---r-~~~~e~~ride~L 132 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNRDKSVFAS---------------------------LFA---R-LRAEERRRIDELL 132 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcCCcchHHH---------------------------hhh---h-cChhHHHHHHHHH
Confidence 99999999999999999986543211111100 000 0 1123356899999
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
...||. +..++....||-||||++.|+..|+++|++||||||++|+-.+......++|++ .+.+|++|.||+.|+..
T Consensus 133 a~igL~-~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~ 211 (249)
T COG4674 133 ATIGLG-DERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVRE 211 (249)
T ss_pred HHcccc-hhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHH
Confidence 999996 567888999999999999999999999999999999999998887777777764 46799999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+|++|.+|+.|.+ ...|+.++.
T Consensus 212 ~A~~VTVlh~G~V-L~EGsld~v 233 (249)
T COG4674 212 IADKVTVLHEGSV-LAEGSLDEV 233 (249)
T ss_pred hhheeEEEeccce-eecccHHHh
Confidence 9999999999975 678887754
|
|
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=302.07 Aligned_cols=190 Identities=27% Similarity=0.438 Sum_probs=160.4
Q ss_pred EEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ceEEEEec
Q 008750 103 ISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MKIAFLSQ 168 (555)
Q Consensus 103 ls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ig~v~Q 168 (555)
+.+++|+. +| +++|+++.-.++||.|+||||||||+++|+|+.+|+.|.|.++|.. .+||||||
T Consensus 6 ~~~~lG~~-~l-~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQ 83 (352)
T COG4148 6 FRQRLGNF-AL-DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQ 83 (352)
T ss_pred hhhhcCce-EE-EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEee
Confidence 34444443 34 6899998867999999999999999999999999999999998742 26999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
|..+|+++||+-|+..+... .....++++.+.+|+
T Consensus 84 DARLFpH~tVrgNL~YG~~~---------------------------------------------~~~~~fd~iv~lLGI 118 (352)
T COG4148 84 DARLFPHYTVRGNLRYGMWK---------------------------------------------SMRAQFDQLVALLGI 118 (352)
T ss_pred ccccccceEEecchhhhhcc---------------------------------------------cchHhHHHHHHHhCc
Confidence 99999999999998643210 012345667788898
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. .+++|+|.+|||||||||+|+|||+..|++||||||.++||..-+..+.-+|. +.+..|+.|||-++++.++||
T Consensus 119 ~-hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd 197 (352)
T COG4148 119 E-HLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLAD 197 (352)
T ss_pred H-HHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhh
Confidence 6 57799999999999999999999999999999999999999998888877764 468999999999999999999
Q ss_pred eeEEecCCeEeeccCCh
Q 008750 325 KIVETEMGVSRTYEGNY 341 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y 341 (555)
+|++|++|++.. .|..
T Consensus 198 ~vV~le~GkV~A-~g~~ 213 (352)
T COG4148 198 RVVVLENGKVKA-SGPL 213 (352)
T ss_pred eEEEecCCeEEe-cCcH
Confidence 999999999754 4443
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-37 Score=305.33 Aligned_cols=184 Identities=25% Similarity=0.352 Sum_probs=150.0
Q ss_pred EeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE-----------EcCCCc-------
Q 008750 101 ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-----------KAKSNM------- 161 (555)
Q Consensus 101 ~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~-----------~~g~~~------- 161 (555)
.||+|+|++. .+|+|+|+ |.+|++++|+|+||||||||+++|+|+++|++|+|. ++|.+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 4789999765 59999995 999999999999999999999999999999999995 555321
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|++|++..++ .++.+++.... .....+
T Consensus 83 ~~~~~~i~~~~~~~~~~~-~~~~~~i~~~l--------------------------------------------~~~~~~ 117 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIP-KAVKGKVGELL--------------------------------------------KKKDER 117 (255)
T ss_pred hhcccceeeecchhccCc-hHHHHHHHHHh--------------------------------------------chhHHH
Confidence 3677888766544 35555443210 001123
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
..+.++++.+|+.. ..++.+.+||||||||++|||||+.+|+++||||||++||+.++..+.+.++ +.+.|||+||
T Consensus 118 ~~~~~~l~~~gl~~-~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiS 196 (255)
T cd03236 118 GKLDELVDQLELRH-VLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVE 196 (255)
T ss_pred HHHHHHHHHcCCch-hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEE
Confidence 45677888889863 4678899999999999999999999999999999999999999988887765 3589999999
Q ss_pred cCHHHHHhhcceeEEecC
Q 008750 314 HDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~ 331 (555)
||++++..+||+|++|++
T Consensus 197 Hd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 197 HDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred CCHHHHHHhCCEEEEECC
Confidence 999999999999999964
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=363.37 Aligned_cols=212 Identities=22% Similarity=0.360 Sum_probs=163.8
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
.+.|+++||+++|+. .++|+||||+|++||++||||+||||||||+++|+|+++ ++|+|.++|.++ +
T Consensus 1215 ~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~ 1293 (1490)
T TIGR01271 1215 GGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKA 1293 (1490)
T ss_pred CCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhc
Confidence 356999999999953 679999999999999999999999999999999999997 799999999653 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+||||+|.+ |..||++|+.. +.. . .-+.+...++. . .+...+..+
T Consensus 1294 is~IpQdp~L-F~GTIR~NLdp-~~~-~----tdeei~~aL~~------------------------~---~L~~~i~~l 1339 (1490)
T TIGR01271 1294 FGVIPQKVFI-FSGTFRKNLDP-YEQ-W----SDEEIWKVAEE------------------------V---GLKSVIEQF 1339 (1490)
T ss_pred eEEEeCCCcc-CccCHHHHhCc-ccC-C----CHHHHHHHHHH------------------------C---CCHHHHHhC
Confidence 9999999988 56799999832 110 0 00011111110 0 111111111
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
-+ |++... ...-..||||||||++|||||+.+|+||||||||++||..+...+.+.|++ .++|||+|||+++.+.
T Consensus 1340 p~--GLdt~v-~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~ 1416 (1490)
T TIGR01271 1340 PD--KLDFVL-VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL 1416 (1490)
T ss_pred cc--cccccc-ccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 11 332222 122347999999999999999999999999999999999999999998865 4799999999999997
Q ss_pred hhcceeEEecCCeEeeccCChHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
. ||+|++|++|++..+ |++.+.+.
T Consensus 1417 ~-~DrIlvL~~G~ivE~-g~p~~Ll~ 1440 (1490)
T TIGR01271 1417 E-CQQFLVIEGSSVKQY-DSIQKLLN 1440 (1490)
T ss_pred h-CCEEEEEECCEEEEe-CCHHHHHc
Confidence 5 999999999998654 67766653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=286.31 Aligned_cols=142 Identities=30% Similarity=0.408 Sum_probs=128.4
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHH
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e 180 (555)
.||+++|+++.+++++ |+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. .++|++|++
T Consensus 4 ~~l~~~~~~~~~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~i~~~~q~~---------- 70 (177)
T cd03222 4 PDCVKRYGVFFLLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI--TPVYKPQYI---------- 70 (177)
T ss_pred CCeEEEECCEEEEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE--EEEEEcccC----------
Confidence 5899999998999985 999999999999999999999999999999999999999864 467776531
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
.|
T Consensus 71 ------------------------------------------------------------------------------~L 72 (177)
T cd03222 71 ------------------------------------------------------------------------------DL 72 (177)
T ss_pred ------------------------------------------------------------------------------CC
Confidence 19
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+.+ . +.|||+||||++++..+||+|++|+++.
T Consensus 73 SgGq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~ 149 (177)
T cd03222 73 SGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEP 149 (177)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999999999999999999988887743 3 4899999999999999999999998764
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-36 Score=336.28 Aligned_cols=205 Identities=24% Similarity=0.379 Sum_probs=173.0
Q ss_pred ccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------
Q 008750 96 SGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------- 160 (555)
++|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 46999999999953 469999999999999999999999999999999999999999999999853
Q ss_pred ---ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH
Q 008750 161 ---MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA 237 (555)
Q Consensus 161 ---~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (555)
..++|++|++.+++..|+.||+..... .. .....+.++
T Consensus 83 ~~~~~i~~v~q~~~l~~~~tv~enl~~~~~---------------~~------------------------~~~~~~~~~ 123 (648)
T PRK10535 83 LRREHFGFIFQRYHLLSHLTAAQNVEVPAV---------------YA------------------------GLERKQRLL 123 (648)
T ss_pred HHhccEEEEeCCcccCCCCCHHHHHHHHHH---------------Hc------------------------CCCHHHHHH
Confidence 248999999988888899998753110 00 001112345
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEec
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSH 314 (555)
++.++++.+|+. ...++.+.+|||||+||++|||||+.+|++|||||||++||+.+++.+.+++++ .+.|+|+|||
T Consensus 124 ~~~~~l~~lgl~-~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH 202 (648)
T PRK10535 124 RAQELLQRLGLE-DRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTH 202 (648)
T ss_pred HHHHHHHHCCCh-hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECC
Confidence 677888999997 457889999999999999999999999999999999999999999999888753 5899999999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
+++++. .||++++|++|++. ..|..+
T Consensus 203 ~~~~~~-~~d~i~~l~~G~i~-~~g~~~ 228 (648)
T PRK10535 203 DPQVAA-QAERVIEIRDGEIV-RNPPAQ 228 (648)
T ss_pred CHHHHH-hCCEEEEEECCEEE-eecCcc
Confidence 999886 69999999999975 444433
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=314.03 Aligned_cols=177 Identities=27% Similarity=0.400 Sum_probs=148.8
Q ss_pred EEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 128 LVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 128 lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
|+|+||||||||+++|+|+++|++|+|.++|.+. .++|++|++.+++.+||.+|+......
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~----------- 69 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKM----------- 69 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhh-----------
Confidence 6899999999999999999999999999988532 599999999888889999998643110
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~ 279 (555)
......+...++.++++.+|+. ...++++.+|||||||||+|||||+.+|+
T Consensus 70 ----------------------------~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qRvalaraL~~~p~ 120 (325)
T TIGR01187 70 ----------------------------RKVPRAEIKPRVLEALRLVQLE-EFADRKPHQLSGGQQQRVALARALVFKPK 120 (325)
T ss_pred ----------------------------cCCCHHHHHHHHHHHHHHcCCc-chhcCChhhCCHHHHHHHHHHHHHHhCCC
Confidence 0001112345677889999996 46789999999999999999999999999
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|||||||++||+.++..+.+.|++ .|.|+|+||||++++..+||+|++|++|++. ..|+.+++.
T Consensus 121 lllLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~-~~g~~~~~~ 189 (325)
T TIGR01187 121 ILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIA-QIGTPEEIY 189 (325)
T ss_pred EEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 9999999999999999999887743 4899999999999999999999999999974 557666543
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=293.03 Aligned_cols=195 Identities=25% Similarity=0.423 Sum_probs=153.3
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe-cccccCcCccHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS-QEFEVSMSRTVRE 180 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~-Q~~~~~~~~tv~e 180 (555)
++++||||+|++|+++|+||+|||||||++|+|+|++.|++|.|.++|... ++++|. |...+.....+.+
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdlp~~d 117 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDLPALD 117 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeeeechhhh
Confidence 589999999999999999999999999999999999999999999986421 111111 1111111111111
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
-+ .+......++.+...++.+.+.+-++++ ...+.+++.|
T Consensus 118 s~---------------------------------------~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~-~~lk~~vr~L 157 (325)
T COG4586 118 SL---------------------------------------EVLKLIYEIPDDEFAERLDFLTEILDLE-GFLKWPVRKL 157 (325)
T ss_pred hH---------------------------------------HHHHHHHhCCHHHHHHHHHHHHHHhcch-hhhhhhhhhc
Confidence 00 0111122345555667777788888886 4567889999
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEecCCeEee
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
|-|||+|+.||.+|+++|+||+|||||-+||+.++..+.++|++ ++.||+++||+++.+..+||||++|+.|++ +
T Consensus 158 SlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gql-v 236 (325)
T COG4586 158 SLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQL-V 236 (325)
T ss_pred cchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcE-e
Confidence 99999999999999999999999999999999999999888864 689999999999999999999999999996 7
Q ss_pred ccCChHHHHH
Q 008750 337 YEGNYSQYVL 346 (555)
Q Consensus 337 ~~G~y~~~~~ 346 (555)
|+|+..++.+
T Consensus 237 ~dg~l~~l~~ 246 (325)
T COG4586 237 FDGTLAQLQE 246 (325)
T ss_pred ecccHHHHHH
Confidence 9998877654
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=271.27 Aligned_cols=212 Identities=20% Similarity=0.404 Sum_probs=172.3
Q ss_pred CccEEEEeEEEEeCC---------ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----
Q 008750 95 SSGVKLENISKSYKG---------VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---------~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----- 160 (555)
++.++++|+++.|.. ..+++.|||++++|+.+||||.||||||||.|+|+|+++|++|+|.++|..
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence 356899999999842 248999999999999999999999999999999999999999999999864
Q ss_pred -----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 161 -----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
..|-+++|+|+-.++. +.++ +.+++.+..+. -.+.....
T Consensus 82 y~~R~k~IRMiFQDpnts~NP--Rl~i-------------------------------GqiLd~PL~l~---T~~~~~~R 125 (267)
T COG4167 82 YSFRSKRIRMIFQDPNTSLNP--RLRI-------------------------------GQILDFPLRLN---TDLEPEQR 125 (267)
T ss_pred hHhhhhheeeeecCCccccCh--hhhh-------------------------------hhHhcchhhhc---ccCChHHH
Confidence 3589999998654332 2222 11111111111 12233445
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEE
Q 008750 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVI 311 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIi 311 (555)
.+++-+.|..+|+-++..+-++..||-||||||+|||||+.+|+|+|.||..++||...+..+.++. .+.|.+.|.
T Consensus 126 ~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiY 205 (267)
T COG4167 126 RKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIY 205 (267)
T ss_pred HHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEE
Confidence 6678888999999999999999999999999999999999999999999999999999888877753 457999999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
|+.++..+..++|.|+||+.|+++.| |...+
T Consensus 206 V~QhlG~iKHi~D~viVM~EG~vvE~-G~t~~ 236 (267)
T COG4167 206 VTQHIGMIKHISDQVLVMHEGEVVER-GSTAD 236 (267)
T ss_pred EechhhHhhhhcccEEEEecCceeec-CChhh
Confidence 99999999999999999999998665 44333
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=300.97 Aligned_cols=251 Identities=21% Similarity=0.330 Sum_probs=194.1
Q ss_pred hhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEc
Q 008750 52 ATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVG 130 (555)
Q Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG 130 (555)
.-..|+.++.+..+.+++++....+++.....+.+.... -....+.+.||+|.|. .+++|+++||++++|+++|+||
T Consensus 219 lg~~Yrei~q~ltdme~mfdLl~~~~~v~d~pda~~L~~--~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg 296 (497)
T COG5265 219 LGFSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWP--VRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVG 296 (497)
T ss_pred hHHHHHHHHHhhhhHHHHHHhhccchhhccCCCCccccc--cccceEEEEEEEeeccccchhhcCccccccCccEEEEEe
Confidence 444567788999999999999888877666555444432 2345689999999995 5789999999999999999999
Q ss_pred CCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhh----HHHHHHHHHH
Q 008750 131 VNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAF----KEEMEIAGKL 196 (555)
Q Consensus 131 ~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~----~~~~~~~~~~ 196 (555)
++|+||||++++|..++++++|.|.++|.++ .||+|||+..+ |+.|+..|+..+- .++...+.+.
T Consensus 297 ~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvL-FNDti~yni~ygr~~at~eev~aaa~~ 375 (497)
T COG5265 297 ESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVL-FNDTIAYNIKYGRPDATAEEVGAAAEA 375 (497)
T ss_pred CCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccccee-hhhhHHHHHhccCccccHHHHHHHHHH
Confidence 9999999999999999999999999999764 49999999877 7889998885432 1111111111
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~ 276 (555)
.+++.. +..+.+. ++.....|.. .|||||||||+|||+++.
T Consensus 376 aqi~~f------------------------------------i~~lP~g--y~t~Vgergl-klSggekqrvaiar~ilk 416 (497)
T COG5265 376 AQIHDF------------------------------------IQSLPEG--YDTGVGERGL-KLSGGEKQRVAIARTILK 416 (497)
T ss_pred hhhhHH------------------------------------HHhCchh--hhcccchhee-eccCchHHHHHHHHHHhc
Confidence 111111 1111111 1111222332 699999999999999999
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+|+||+|||.||+||..+++.+...|++ .|.|-++|.|+++.+.. ||.|++|++|+++ ..|+..+.+.
T Consensus 417 ~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~-adeiivl~~g~i~-erg~h~~ll~ 486 (497)
T COG5265 417 NPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIID-ADEIIVLDNGRIV-ERGTHEELLA 486 (497)
T ss_pred CCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccC-CceEEEeeCCEEE-ecCcHHHHHH
Confidence 9999999999999999999999998864 68999999999999975 9999999999974 4676665544
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=311.35 Aligned_cols=209 Identities=28% Similarity=0.465 Sum_probs=182.3
Q ss_pred CCccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc-
Q 008750 94 ISSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE- 171 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~- 171 (555)
.+|.|.+.||+|.|.+. .++++++|-|..++++++|||||+|||||||+|+|.+.|..|.|... ....+++..|+..
T Consensus 386 p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~-~H~~~~~y~Qh~~e 464 (614)
T KOG0927|consen 386 PPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRH-SHNKLPRYNQHLAE 464 (614)
T ss_pred CCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccc-ccccchhhhhhhHh
Confidence 46789999999999766 59999999999999999999999999999999999999999999865 3446777777753
Q ss_pred -cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 172 -VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 172 -~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
+....++.++++..+. .....+.+..++.++||..
T Consensus 465 ~ldl~~s~le~~~~~~~--------------------------------------------~~~~~e~~r~ilgrfgLtg 500 (614)
T KOG0927|consen 465 QLDLDKSSLEFMMPKFP--------------------------------------------DEKELEEMRSILGRFGLTG 500 (614)
T ss_pred hcCcchhHHHHHHHhcc--------------------------------------------ccchHHHHHHHHHHhCCCc
Confidence 2334455555443221 1123456788999999998
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+..+.++++||+|||.||++|++++..|.+|||||||||||..++..+.++|.++.++||+||||+.++.+++++|++.+
T Consensus 501 d~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~Ggvv~vSHDfrlI~qVaeEi~~c~ 580 (614)
T KOG0927|consen 501 DAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFPGGVVLVSHDFRLISQVAEEIWVCE 580 (614)
T ss_pred cccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccCCceeeeechhhHHHHHHHHhHhhc
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeccCChHHHHHH
Q 008750 331 MGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~ 347 (555)
++.+..++|.|..|...
T Consensus 581 ~~~~~~~~G~i~~yk~~ 597 (614)
T KOG0927|consen 581 NGTVTKWDGDIEIYKEH 597 (614)
T ss_pred cCceeecCccHHHHHHH
Confidence 99999999999988764
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=277.81 Aligned_cols=194 Identities=30% Similarity=0.398 Sum_probs=153.5
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEec-ccccCcCccHHHHHHHhhHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQ-EFEVSMSRTVREEFMSAFKE 188 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q-~~~~~~~~tv~e~~~~~~~~ 188 (555)
.++|+||||+|++||++||||+||||||||+|+|+|.++|++|+|.++|. |+++.. ...+.+.+|.+||+....
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~---v~~li~lg~Gf~pelTGreNi~l~~-- 114 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK---VAPLIELGAGFDPELTGRENIYLRG-- 114 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce---EehhhhcccCCCcccchHHHHHHHH--
Confidence 36999999999999999999999999999999999999999999999873 443332 234557889999985310
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (555)
....+...+++.+++++.+.-.|. ++.+.|+.++|-||+-|+
T Consensus 115 -------------------------------------~~~G~~~~ei~~~~~eIieFaELG-~fi~~PvktYSSGM~aRL 156 (249)
T COG1134 115 -------------------------------------LILGLTRKEIDEKVDEIIEFAELG-DFIDQPVKTYSSGMYARL 156 (249)
T ss_pred -------------------------------------HHhCccHHHHHHHHHHHHHHHHHH-HHhhCchhhccHHHHHHH
Confidence 001122334455555555544442 678999999999999999
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++|-|...+|+|||+||-.+..|..-.+.-.+.+. +.+.|+|+||||+..+.++||++++|++|.+ .+.|..++..
T Consensus 157 aFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i-~~~G~~~~vi 235 (249)
T COG1134 157 AFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQI-RMEGSPEEVI 235 (249)
T ss_pred HHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEE-EEcCCHHHHH
Confidence 99999999999999999999999976655444432 3469999999999999999999999999987 4567776655
Q ss_pred HH
Q 008750 346 LE 347 (555)
Q Consensus 346 ~~ 347 (555)
..
T Consensus 236 ~~ 237 (249)
T COG1134 236 PA 237 (249)
T ss_pred HH
Confidence 43
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=264.10 Aligned_cols=204 Identities=27% Similarity=0.438 Sum_probs=167.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------- 160 (555)
.|.+++.++++.|++..-.+||||++.|||+.||||++|||||||+++|++-+.|++|+|.+...+
T Consensus 4 ~PLL~V~~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeR 83 (258)
T COG4107 4 KPLLSVSGLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83 (258)
T ss_pred CcceeehhhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHH
Confidence 467999999999999999999999999999999999999999999999999999999999876421
Q ss_pred -----ceEEEEecccccCcCccHHH--HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 161 -----MKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 161 -----~~ig~v~Q~~~~~~~~tv~e--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
..-|+|.|+|.--..++|-. |+-.-. + .++ .-..-
T Consensus 84 R~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERl---m---------------------a~G--------------~RHYG 125 (258)
T COG4107 84 RRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERL---M---------------------AIG--------------ARHYG 125 (258)
T ss_pred HHHhhhccceeecCccccceeeeccCCccchhH---H---------------------hhh--------------hhhhh
Confidence 13689999986444443321 221000 0 000 00112
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPM 309 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tv 309 (555)
.+.+.+..+|+++.++....|..|.++|||++||+.|||-|+..|.++++||||-+||+.....|.++++ +.+.++
T Consensus 126 ~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~ 205 (258)
T COG4107 126 NIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAV 205 (258)
T ss_pred hHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceE
Confidence 4556677889999998888888899999999999999999999999999999999999999888888764 579999
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEee
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
||||||+..+.-+++|.++|++|.++.
T Consensus 206 viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 206 VIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred EEEechhHHHHHhhhcceeecCCCEec
Confidence 999999999999999999999998643
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=270.67 Aligned_cols=209 Identities=25% Similarity=0.336 Sum_probs=176.1
Q ss_pred ccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------
Q 008750 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~----------- 161 (555)
.+++++||+.+-.++ .+|++|||+|++||+++|.||||||||||.++|+|. |++++|+|.++|.++
T Consensus 2 ~~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~ 81 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARA 81 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhc
Confidence 468999999999885 999999999999999999999999999999999998 478999999999764
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|..-+|.|.-.+..++.+++..+..... .. . .+ ..+...++.+
T Consensus 82 GifLafQ~P~ei~GV~~~~fLr~a~n~~~--------------~~-~--------------------~~-~~~~~~~~~e 125 (251)
T COG0396 82 GIFLAFQYPVEIPGVTNSDFLRAAMNARR--------------GA-R--------------------GI-LPEFIKELKE 125 (251)
T ss_pred CCEEeecCCccCCCeeHHHHHHHHHHhhh--------------cc-c--------------------cc-cHHHHHHHHH
Confidence 58888999988888899887754331100 00 0 00 1133556778
Q ss_pred HhhhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH---HcCCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~---l~~~~~tvIiiSHd~~ 317 (555)
.++.+++++.+++|++. .||||||+|..|+.+++.+|++.|||||-||||..+.+.+.+. +++.+.++++|||...
T Consensus 126 ~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~r 205 (251)
T COG0396 126 KAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQR 205 (251)
T ss_pred HHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHH
Confidence 89999999889999986 7999999999999999999999999999999999998887765 4567999999999999
Q ss_pred HHHhhc-ceeEEecCCeEeeccCCh
Q 008750 318 FLDQLC-TKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 318 ~l~~~~-dri~~l~~G~~~~~~G~y 341 (555)
.++.+- |++.+|-+|++ +..|+.
T Consensus 206 ll~~i~pD~vhvl~~GrI-v~sG~~ 229 (251)
T COG0396 206 LLDYIKPDKVHVLYDGRI-VKSGDP 229 (251)
T ss_pred HHhhcCCCEEEEEECCEE-EecCCH
Confidence 998753 99999999997 456665
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=269.01 Aligned_cols=153 Identities=37% Similarity=0.602 Sum_probs=128.5
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHH
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~ 179 (555)
++|+++.|++.++|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.+.. +. ...
T Consensus 2 ~~~~~~~~~~~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~-----~~-------~~~ 69 (157)
T cd00267 2 IENLSFRYGGRTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIA-----KL-------PLE 69 (157)
T ss_pred eEEEEEEeCCeeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcc-----cC-------CHH
Confidence 689999998888999999999999999999999999999999999999999999999864220 00 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (555)
.+ ...+++ +.+
T Consensus 70 -~~------------------------------------------------------------~~~i~~--------~~q 80 (157)
T cd00267 70 -EL------------------------------------------------------------RRRIGY--------VPQ 80 (157)
T ss_pred -HH------------------------------------------------------------HhceEE--------Eee
Confidence 00 000111 112
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
|||||+||++||++|+.+|+++||||||++||+.++.++.+.+.+ .+.|+|++||+++++..+||+++++++|+
T Consensus 81 lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999988753 36899999999999999999999998863
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=260.96 Aligned_cols=191 Identities=25% Similarity=0.384 Sum_probs=164.0
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc--------eEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM--------KIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~--------~ig~ 165 (555)
++.++||+.+.++..+|.+|||+|.+||++-|.||+|||||||+..+.|.+.++ +|++.+++++. ++|+
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~Gi 81 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGI 81 (213)
T ss_pred ceeeeeeeecCCCceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheee
Confidence 578999999999999999999999999999999999999999999999999874 79999988643 6999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..+|.+|+..+....+ ........+...|++
T Consensus 82 LFQD~lLFphlsVg~Nl~fAlp~~~----------------------------------------KG~aRr~~a~aAL~~ 121 (213)
T COG4136 82 LFQDALLFPHLSVGQNLLFALPATL----------------------------------------KGNARRNAANAALER 121 (213)
T ss_pred eecccccccccccccceEEecCccc----------------------------------------ccHHHHhhHHHHHHH
Confidence 9999999999999999876543211 111223446677888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHH----HHHHHHHHcCCCceEEEEecCHHHHHh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~----~~~l~~~l~~~~~tvIiiSHd~~~l~~ 321 (555)
.|++ ...++.|.+||||||-||+|-|+|+..|++|+||||+|.||..- ++|+...++..|...|+||||.+.+.
T Consensus 122 ~gL~-g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp- 199 (213)
T COG4136 122 SGLD-GAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP- 199 (213)
T ss_pred hccc-hhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-
Confidence 8996 56789999999999999999999999999999999999999854 56666667788999999999999997
Q ss_pred hcceeEEe
Q 008750 322 LCTKIVET 329 (555)
Q Consensus 322 ~~dri~~l 329 (555)
...||+++
T Consensus 200 agsrVie~ 207 (213)
T COG4136 200 AGSRVIEM 207 (213)
T ss_pred CCCeeeee
Confidence 57788876
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=264.39 Aligned_cols=196 Identities=27% Similarity=0.400 Sum_probs=167.1
Q ss_pred cEEEEeEEEEe-----CCc--eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------
Q 008750 97 GVKLENISKSY-----KGV--TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------- 160 (555)
Q Consensus 97 ~i~l~nls~~y-----~~~--~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------- 160 (555)
.|.++|++|+| ++. ++|+|+||+++.||+++|=|++|+|||||||+|.|.|.|++|+|.+....
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 48999999999 343 69999999999999999999999999999999999999999999875321
Q ss_pred ---------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ---------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ---------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..||||+|.....+..+..+.++.+.- ...++
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll---------------------------------------~~gv~ 124 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL---------------------------------------ARGVP 124 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHH---------------------------------------HcCCC
Confidence 258888887666666555555443210 01344
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~t 308 (555)
.+....++..+|.++.++..++.-.|.++||||+|||.|||.++.+-+||||||||+.||...++-+.+++. ..|..
T Consensus 125 ~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaA 204 (235)
T COG4778 125 REVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAA 204 (235)
T ss_pred HHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCce
Confidence 556678899999999999999999999999999999999999999999999999999999999999999885 46999
Q ss_pred EEEEecCHHHHHhhcceeEEecC
Q 008750 309 MVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~ 331 (555)
+|=|-||.+.=+.+|||++.+..
T Consensus 205 lvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 205 LVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred EEEeeccHHHHHHHhhheeeccc
Confidence 99999999999999999998754
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=271.95 Aligned_cols=149 Identities=22% Similarity=0.288 Sum_probs=124.4
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEecccccCcCccHHHHHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFEVSMSRTVREEFMS 184 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q~~~~~~~~tv~e~~~~ 184 (555)
+++|+|+||+|++|++++|+|||||||||||++|. +++|+|.+++... .++|++|
T Consensus 8 ~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~~~~~~~~~~~~q---------------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLPKFSRNKLIFIDQ---------------- 67 (176)
T ss_pred eeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcccccccccEEEEhH----------------
Confidence 57999999999999999999999999999999996 3789998875411 2333333
Q ss_pred hhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHH
Q 008750 185 AFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264 (555)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq 264 (555)
.++++.+|+.....++++.+|||||
T Consensus 68 -------------------------------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq 92 (176)
T cd03238 68 -------------------------------------------------------LQFLIDVGLGYLTLGQKLSTLSGGE 92 (176)
T ss_pred -------------------------------------------------------HHHHHHcCCCccccCCCcCcCCHHH
Confidence 1124455665334678889999999
Q ss_pred HHHHHHHHHhccC--CCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 265 QMRMSLGKILLQD--PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 265 rqRv~lAraL~~~--p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
|||++|||||+.+ |++|||||||++||+.+++.+.+.+++ .|.|||+|||+++++. .||+|++|++|..
T Consensus 93 ~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~-~~d~i~~l~~g~~ 166 (176)
T cd03238 93 LQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS-SADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hCCEEEEECCCCC
Confidence 9999999999999 999999999999999999999888754 5899999999999984 7999999988753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=342.63 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=169.5
Q ss_pred ccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC---CCceEEEEcCCCc------e
Q 008750 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE---PDSGNVIKAKSNM------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~---p~~G~I~~~g~~~------~ 162 (555)
..++++||++.|+ ++.+|+|||++|++||++||+|+|||||||||++|+|+.+ |++|+|.++|.+. .
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~ 837 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS 837 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence 3589999999995 3579999999999999999999999999999999999997 7899999998643 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
+|||+|++.+.+..||+|++..... +.. . ......+..++++++
T Consensus 838 i~yv~Q~~~~~~~~Tv~E~L~~~a~---------------l~~-~--------------------~~~~~~~~~~~v~~~ 881 (1394)
T TIGR00956 838 IGYVQQQDLHLPTSTVRESLRFSAY---------------LRQ-P--------------------KSVSKSEKMEYVEEV 881 (1394)
T ss_pred eeeecccccCCCCCCHHHHHHHHHH---------------hCC-C--------------------CCCCHHHHHHHHHHH
Confidence 8999999877788999999853210 000 0 001112234567888
Q ss_pred hhhcCCCccccCCCCC----CCChHHHHHHHHHHHhccCCC-EEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEec
Q 008750 243 MPELGFTADDGDRLVA----SFSSGWQMRMSLGKILLQDPD-LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISH 314 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~----~LSGGqrqRv~lAraL~~~p~-lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSH 314 (555)
++.+|+. +..++.+. .|||||||||+||++|+.+|+ ||||||||++||..+...+.+.|++ .|.|||+++|
T Consensus 882 l~~l~L~-~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H 960 (1394)
T TIGR00956 882 IKLLEME-SYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIH 960 (1394)
T ss_pred HHHcCCh-hhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 9999996 45677776 799999999999999999997 9999999999999999999888753 5899999999
Q ss_pred CHHH-HHhhcceeEEecCC-eEeeccCC
Q 008750 315 DRAF-LDQLCTKIVETEMG-VSRTYEGN 340 (555)
Q Consensus 315 d~~~-l~~~~dri~~l~~G-~~~~~~G~ 340 (555)
+++. +.+.||+|++|++| ++ .|.|+
T Consensus 961 ~~~~~~~~~~D~vl~L~~GG~i-v~~G~ 987 (1394)
T TIGR00956 961 QPSAILFEEFDRLLLLQKGGQT-VYFGD 987 (1394)
T ss_pred CCCHHHHHhcCEEEEEcCCCEE-EEECC
Confidence 9986 45679999999997 65 44443
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-34 Score=321.60 Aligned_cols=199 Identities=28% Similarity=0.335 Sum_probs=164.4
Q ss_pred CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCCc-------eEEEEecccccCcCccH
Q 008750 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSNM-------KIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~~-------~ig~v~Q~~~~~~~~tv 178 (555)
++++|+|||++|++||.++|+|+|||||||||++|+|..+|. +|+|.++|.+. .+||++|++.+++.+||
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~lTV 116 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTV 116 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeeccccccCccCcH
Confidence 467999999999999999999999999999999999999885 79999998653 58999999988889999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
+||+..... +. .. ..+..++..++++++++.+|+.+ ..+..+.
T Consensus 117 ~e~l~f~~~---------------~~-~~--------------------~~~~~~~~~~~v~~~l~~lgL~~-~~~t~vg 159 (617)
T TIGR00955 117 REHLMFQAH---------------LR-MP--------------------RRVTKKEKRERVDEVLQALGLRK-CANTRIG 159 (617)
T ss_pred HHHHHHHHh---------------cC-CC--------------------CCCCHHHHHHHHHHHHHHcCchh-cCcCccC
Confidence 999854210 00 00 00111233456888999999964 3466665
Q ss_pred ------CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH-HHHhhcceeEE
Q 008750 259 ------SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA-FLDQLCTKIVE 328 (555)
Q Consensus 259 ------~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~-~l~~~~dri~~ 328 (555)
.|||||||||+||++|+.+|++|+|||||++||..+...+.+.|++ .|.|+|+++|+++ .+.++||+|++
T Consensus 160 ~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~l 239 (617)
T TIGR00955 160 VPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIIL 239 (617)
T ss_pred CCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEE
Confidence 5999999999999999999999999999999999999998887753 5899999999995 77889999999
Q ss_pred ecCCeEeeccCChHHHH
Q 008750 329 TEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 329 l~~G~~~~~~G~y~~~~ 345 (555)
|++|++ +|.|++++..
T Consensus 240 l~~G~~-v~~G~~~~~~ 255 (617)
T TIGR00955 240 MAEGRV-AYLGSPDQAV 255 (617)
T ss_pred eeCCeE-EEECCHHHHH
Confidence 999986 5778876653
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=269.71 Aligned_cols=207 Identities=25% Similarity=0.353 Sum_probs=161.4
Q ss_pred cEEEEeEEEEeC-C----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 97 GVKLENISKSYK-G----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~-~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+|.+.|+++.|. + +++|+++||+|.+|+++.|||.||||||||+++|+|-+.|++|+|.++|.+.
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~ 80 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRAN 80 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhh
Confidence 366788888773 2 4699999999999999999999999999999999999999999999998754
Q ss_pred eEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 KIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 ~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.++-|+|+|. ..+.+||.||+..+... .+.+.+...+ .......+
T Consensus 81 ~larVfQdp~~gt~~~lTieENl~la~~R-----g~~rgl~~~l----------------------------n~~~~~~f 127 (263)
T COG1101 81 LLARVFQDPLAGTAPELTIEENLALAESR-----GKKRGLSSAL----------------------------NERRRSSF 127 (263)
T ss_pred HHHHHhcchhhCCcccccHHHHHHHHHhc-----Ccccccchhh----------------------------hHHHHHHH
Confidence 3788999984 45789999998754210 0000000000 00111222
Q ss_pred HHHhhhcCCC-ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHH----HHcCCCceEEEEec
Q 008750 240 SKLMPELGFT-ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEG----YLGKQDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~-~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~----~l~~~~~tvIiiSH 314 (555)
.+.+..+|+. ...++.++.-|||||||-++|+.|-+..|+||+|||-|++|||.+.+.+.+ ++.+.+.|.+||||
T Consensus 128 ~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTH 207 (263)
T COG1101 128 RERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207 (263)
T ss_pred HHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEec
Confidence 3333443332 234567788999999999999999999999999999999999998887765 45678999999999
Q ss_pred CHHHHHhhcceeEEecCCeEee
Q 008750 315 DRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~ 336 (555)
.++.+-.+.+|.|+|+.|+++.
T Consensus 208 nm~~Al~yG~RlImLh~G~Ivl 229 (263)
T COG1101 208 NMEDALDYGNRLIMLHSGKIVL 229 (263)
T ss_pred cHHHHHhhCCeEEEEeCCeEEE
Confidence 9999999999999999999754
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=331.89 Aligned_cols=195 Identities=23% Similarity=0.289 Sum_probs=137.2
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc---cCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCc
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL---QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDV 307 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~---~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~ 307 (555)
.+..++ ++|+.+|+.....++++.+|||||+|||+||++|+ .+|++|||||||++||+..++.|.++|. +.|.
T Consensus 785 ~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~ 863 (1809)
T PRK00635 785 SIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGH 863 (1809)
T ss_pred HHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 344556 47888999643368999999999999999999997 6999999999999999999999988774 4589
Q ss_pred eEEEEecCHHHHHhhcceeEEec------CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc
Q 008750 308 PMVIISHDRAFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGAN 381 (555)
Q Consensus 308 tvIiiSHd~~~l~~~~dri~~l~------~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (555)
|||+||||++++ .+||+|++|. +|++ ++.|+.+++..... .... .+....
T Consensus 864 TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~i-v~~Gtpeel~~~~s-~t~~-------------~l~~~l-------- 919 (1809)
T PRK00635 864 TVVIIEHNMHVV-KVADYVLELGPEGGNLGGYL-LASCSPEELIHLHT-PTAK-------------ALRPYL-------- 919 (1809)
T ss_pred EEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEE-EEeCCHHHHHhccC-chHH-------------HHHHHh--------
Confidence 999999999999 7999999996 4554 56787665542100 0000 000000
Q ss_pred hhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCC
Q 008750 382 SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (555)
Q Consensus 382 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGs 461 (555)
.... ..+ . +. +. . ... +...++.+.+.....|+++||+|++|++++|+|+|||
T Consensus 920 -----------~~~~-----~~~----~--~~-~~-~--~~~-l~~~~i~i~~~~~~~lk~isl~i~~gei~~itG~nGs 972 (1809)
T PRK00635 920 -----------SSPQ-----ELP----Y--LP-DP-S--PKP-PVPADITIKNAYQHNLKHIDLSLPRNALTAVTGPSAS 972 (1809)
T ss_pred -----------hccc-----ccc----c--cc-cc-c--ccc-cccceEEEeccccccccceeEEecCCcEEEEECCCCC
Confidence 0000 000 0 00 00 0 011 3445566665544579999999999999999999999
Q ss_pred cHHHHHHHHhCCCCCCceEEEEC
Q 008750 462 GKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 462 GKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
|||||+..+ ++. .|.+.+.
T Consensus 973 GKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 973 GKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred ChhHHHHHH--HHh--hccEeee
Confidence 999987766 222 7777665
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=323.07 Aligned_cols=246 Identities=23% Similarity=0.355 Sum_probs=183.9
Q ss_pred HHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccH
Q 008750 59 IAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGK 136 (555)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGK 136 (555)
+-..+.++||+.+....+.+.-.......++..=+..+.|+++|++.+|.. ..||+||||+|++||++||||+.||||
T Consensus 1100 lEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGK 1179 (1381)
T KOG0054|consen 1100 LENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGK 1179 (1381)
T ss_pred HHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCH
Confidence 445567888888766543320000000101112255678999999999943 469999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhc
Q 008750 137 TTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206 (555)
Q Consensus 137 STLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (555)
|||+.+|-++.+|.+|+|.+||.++ +++.+||+|.+ |+.|||.|+- ++.+..+ +++.++++
T Consensus 1180 SSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvL-FsGTvR~NLD-Pf~e~sD-----~~IW~ALe-- 1250 (1381)
T KOG0054|consen 1180 SSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVL-FSGTVRFNLD-PFDEYSD-----DEIWEALE-- 1250 (1381)
T ss_pred HHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCce-ecCccccccC-cccccCH-----HHHHHHHH--
Confidence 9999999999999999999999764 69999999988 8899999972 2211100 11111111
Q ss_pred cccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCC
Q 008750 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP 286 (555)
Q Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEP 286 (555)
...+...+.+.-. ||+.. ....-.+||-||||.++|||||+++++||+|||+
T Consensus 1251 -------------------------~~~Lk~~v~~~p~--~Ld~~-v~egG~N~SvGQRQLlCLARALLr~skILvLDEA 1302 (1381)
T KOG0054|consen 1251 -------------------------RCQLKDVVSSLPG--GLDSE-VSEGGENFSVGQRQLLCLARALLRKSKILVLDEA 1302 (1381)
T ss_pred -------------------------HhChHHHHhhCCc--CCCce-ecCCCccCChHHHHHHHHHHHHhccCCEEEEecc
Confidence 1112222222111 23322 2233468999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChH
Q 008750 287 TNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 287 Ts~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
|+++|+++-..+.+.+++ .++|||.|.|++..+.+ ||||+||++|++.+|+-++.
T Consensus 1303 TAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~EfdsP~~ 1359 (1381)
T KOG0054|consen 1303 TASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDSPAE 1359 (1381)
T ss_pred cccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCChHH
Confidence 999999999999999986 48999999999999986 99999999999998876653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-33 Score=332.83 Aligned_cols=206 Identities=21% Similarity=0.292 Sum_probs=167.2
Q ss_pred cEEEEeEEEEeC-------------CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCCc
Q 008750 97 GVKLENISKSYK-------------GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNM 161 (555)
Q Consensus 97 ~i~l~nls~~y~-------------~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~~ 161 (555)
.+.++||++.++ ++.+|+|||++|++|+++||+|+|||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 589999999873 23699999999999999999999999999999999999763 789999998542
Q ss_pred -------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 162 -------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 162 -------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
.+||++|++.+++..||+|++..... +. ... .....+
T Consensus 947 ~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~---------------lr-~~~--------------------~~~~~~ 990 (1470)
T PLN03140 947 KQETFARISGYCEQNDIHSPQVTVRESLIYSAF---------------LR-LPK--------------------EVSKEE 990 (1470)
T ss_pred ChHHhhhheEEEccccccCCCCcHHHHHHHHHH---------------hC-CCC--------------------CCCHHH
Confidence 48999999888889999999853210 00 000 001112
Q ss_pred HHHHHHHHhhhcCCCccccCCCC-----CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CC
Q 008750 235 LDAKVSKLMPELGFTADDGDRLV-----ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QD 306 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~-----~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~ 306 (555)
..++++++++.+|+.+ ..++.+ ..|||||||||+||++|+.+|+||||||||+|||..+...+.+.|++ .|
T Consensus 991 ~~~~v~~vl~~lgL~~-~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g 1069 (1470)
T PLN03140 991 KMMFVDEVMELVELDN-LKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTG 1069 (1470)
T ss_pred HHHHHHHHHHHCCChh-HhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCC
Confidence 3456788899999863 456654 58999999999999999999999999999999999999999888754 58
Q ss_pred ceEEEEecCHH-HHHhhcceeEEecC-CeEeeccCC
Q 008750 307 VPMVIISHDRA-FLDQLCTKIVETEM-GVSRTYEGN 340 (555)
Q Consensus 307 ~tvIiiSHd~~-~l~~~~dri~~l~~-G~~~~~~G~ 340 (555)
.|||+++|+++ .+.++||++++|++ |++ .|.|+
T Consensus 1070 ~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~-v~~G~ 1104 (1470)
T PLN03140 1070 RTVVCTIHQPSIDIFEAFDELLLMKRGGQV-IYSGP 1104 (1470)
T ss_pred CEEEEEeCCCCHHHHHhCCEEEEEcCCCEE-EEECC
Confidence 99999999998 46789999999997 665 46565
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-33 Score=257.41 Aligned_cols=181 Identities=26% Similarity=0.385 Sum_probs=151.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~v~ 167 (555)
+++.+|++..-+.+++|.++||++.+||.+-|.|+||||||||||+|+|+.+|++|+|.+++.+. .+-|+-
T Consensus 2 ~L~a~~L~~~R~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~~~~~~l~yLG 81 (209)
T COG4133 2 MLEAENLSCERGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQALLYLG 81 (209)
T ss_pred cchhhhhhhccCcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchhhHHHHHHHhh
Confidence 46788999988999999999999999999999999999999999999999999999999987543 234555
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
-.+.+-..+|++||+.+.-. + ....-...+.+++..+|
T Consensus 82 H~~giK~eLTa~ENL~F~~~---------------~---------------------------~~~~~~~~i~~Al~~vg 119 (209)
T COG4133 82 HQPGIKTELTALENLHFWQR---------------F---------------------------HGSGNAATIWEALAQVG 119 (209)
T ss_pred ccccccchhhHHHHHHHHHH---------------H---------------------------hCCCchhhHHHHHHHcC
Confidence 55566677899999753210 0 01112345677788899
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
|. +..|.++.+||-|||+||+|||.++..+++.||||||++||.+.+..|..++. ..|+.||.+||..-.+.
T Consensus 120 L~-g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 120 LA-GLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred cc-cccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 95 57799999999999999999999999999999999999999999999998875 36889999999976664
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-32 Score=264.69 Aligned_cols=95 Identities=18% Similarity=0.225 Sum_probs=84.3
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEec
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSH 314 (555)
.++++.+|+.....++++.+|||||+|||+|||||+.+| ++|||||||++||+.++..+.+.|+ +.|.|+|+|||
T Consensus 118 ~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 118 LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 457888999754578999999999999999999999998 5999999999999999999888774 35899999999
Q ss_pred CHHHHHhhcceeEEe------cCCeEe
Q 008750 315 DRAFLDQLCTKIVET------EMGVSR 335 (555)
Q Consensus 315 d~~~l~~~~dri~~l------~~G~~~ 335 (555)
|++++. +||+|++| ++|+++
T Consensus 198 ~~~~~~-~~d~i~~l~~~~~~~~G~iv 223 (226)
T cd03270 198 DEDTIR-AADHVIDIGPGAGVHGGEIV 223 (226)
T ss_pred CHHHHH-hCCEEEEeCCCccccCCEEE
Confidence 999985 89999999 777764
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=276.77 Aligned_cols=210 Identities=24% Similarity=0.418 Sum_probs=180.4
Q ss_pred CCCccEEEEeEEEEeC-Cc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc
Q 008750 93 SISSGVKLENISKSYK-GV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~-~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~ 170 (555)
..+|.+++.+|+|.|. +. ..+.++++.+.--+++++||+||+||||++|++.|...|..|.+.+.+ ..+|+|.+|+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-r~ri~~f~Qhh 436 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-RLRIKYFAQHH 436 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-cceecchhHhh
Confidence 4568899999999995 44 599999999999999999999999999999999999999999998874 57899999985
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.-++...|...- ... ..-.-..++.++..|..+|++.
T Consensus 437 vd~l~~~v~~vd---------------------------------------~~~----~~~pG~~~ee~r~hl~~~Gl~g 473 (582)
T KOG0062|consen 437 VDFLDKNVNAVD---------------------------------------FME----KSFPGKTEEEIRRHLGSFGLSG 473 (582)
T ss_pred hhHHHHHhHHHH---------------------------------------HHH----HhCCCCCHHHHHHHHHhcCCCc
Confidence 433322221110 000 0011225678899999999999
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+...+++.+||||||-||+||.+...+|.+|+|||||||||.++...|...|+.+++.||+||||.+|+..+|+.+|+.+
T Consensus 474 ~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~GGVv~VSHd~~fi~~~c~E~Wvve 553 (582)
T KOG0062|consen 474 ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFNGGVVLVSHDEEFISSLCKELWVVE 553 (582)
T ss_pred hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcCCcEEEEECcHHHHhhcCceeEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEeeccCChHHHHH
Q 008750 331 MGVSRTYEGNYSQYVL 346 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~ 346 (555)
+|++..+.|..++|..
T Consensus 554 ~g~vt~ieg~~~~yKk 569 (582)
T KOG0062|consen 554 DGKVTPIEGGIDKYKK 569 (582)
T ss_pred CCcEEeeeccHHHHHH
Confidence 9999999998877654
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=268.91 Aligned_cols=206 Identities=22% Similarity=0.427 Sum_probs=174.6
Q ss_pred CCccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 94 ISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 94 ~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
.+|.+-+.||+|.|+ .+++|.+++|-|.-..++|||||||.||||||++|.|.+.|+.|+..-+ ...+||++.|+..-
T Consensus 583 ~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn-hrL~iG~FdQh~~E 661 (807)
T KOG0066|consen 583 NPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN-HRLRIGWFDQHANE 661 (807)
T ss_pred CCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-ceeeeechhhhhHH
Confidence 467889999999995 5689999999999999999999999999999999999999999998765 45789999998643
Q ss_pred --CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 173 --SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 173 --~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
....|..|+++..|. -....++..|..+||..
T Consensus 662 ~L~~Eetp~EyLqr~FN----------------------------------------------lpyq~ARK~LG~fGL~s 695 (807)
T KOG0066|consen 662 ALNGEETPVEYLQRKFN----------------------------------------------LPYQEARKQLGTFGLAS 695 (807)
T ss_pred hhccccCHHHHHHHhcC----------------------------------------------CChHHHHHHhhhhhhhh
Confidence 233455555543220 01234566788888875
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
..-.-.+..|||||+-||+||-.-+..|+|||||||||+||.+++..|.+.+.++.+.|||||||-.++.+.--.+||++
T Consensus 696 HAHTikikdLSGGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~GgVi~VsHDeRLi~eT~C~LwVvE 775 (807)
T KOG0066|consen 696 HAHTIKIKDLSGGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYNGGVIMVSHDERLIVETDCNLWVVE 775 (807)
T ss_pred ccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhccCcEEEEecccceeeecCceEEEEc
Confidence 55555678999999999999999999999999999999999999999999999999999999999999988777889999
Q ss_pred CCeEeeccCChHHHHH
Q 008750 331 MGVSRTYEGNYSQYVL 346 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~ 346 (555)
+-.+...+|.|++|..
T Consensus 776 ~Q~i~eIdGdFeDYkk 791 (807)
T KOG0066|consen 776 NQGIDEIDGDFEDYKK 791 (807)
T ss_pred cCChhhccccHHHHHH
Confidence 8888888999999864
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-30 Score=300.91 Aligned_cols=205 Identities=28% Similarity=0.470 Sum_probs=178.8
Q ss_pred ccEEEEeEEEEeCCce-eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eE
Q 008750 96 SGVKLENISKSYKGVT-VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~-vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~i 163 (555)
..+.++|+++.|+... +++++||.|++||+.|+.|+|||||||++++|+|..+|++|++.+.|.+. .+
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4589999999998766 99999999999999999999999999999999999999999999977543 39
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||+||+..+...+|.+|.+... .+...+...++.+.++.++
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~---------------------------------------arlrG~~~~di~~~v~~ll 683 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFY---------------------------------------ARLRGLPRSDIGSAIEKLL 683 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHH---------------------------------------HHHcCCChhHHHHHHHHHH
Confidence 9999999888889999876421 1112344556777789999
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~ 320 (555)
+.+|+. ..+++++..+|||+|+|+.+|.||+.+|++++|||||+|+||.+++.+++++. +.|+.+|++||-+++++
T Consensus 684 ~~~~L~-~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~E 762 (885)
T KOG0059|consen 684 RLVGLG-PYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAE 762 (885)
T ss_pred HHcCCh-hhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH
Confidence 999996 56788899999999999999999999999999999999999999999999875 34559999999999999
Q ss_pred hhcceeEEecCCeEeeccCCh
Q 008750 321 QLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y 341 (555)
.+|||+.+|.+|++.. -|+.
T Consensus 763 aLCtR~aImv~G~l~c-iGs~ 782 (885)
T KOG0059|consen 763 ALCTRTAIMVIGQLRC-IGSP 782 (885)
T ss_pred HHhhhhheeecCeeEE-ecCh
Confidence 9999999999999754 3553
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.2e-30 Score=292.60 Aligned_cols=180 Identities=19% Similarity=0.288 Sum_probs=134.5
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceE
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPM 309 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tv 309 (555)
+..++. +|+.+||.....++++.+|||||+|||+||++|+.+| ++|||||||++||+...+.|.+.|+ +.|.||
T Consensus 466 i~~rl~-~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TV 544 (943)
T PRK00349 466 IRERLK-FLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTL 544 (943)
T ss_pred HHHHHH-HhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 445554 7899999643479999999999999999999999997 9999999999999999999988864 468999
Q ss_pred EEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh
Q 008750 310 VIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSG 383 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (555)
|+|+||++++. .||+|++| ++|++ ++.|++.++....... ...+..+
T Consensus 545 IvVeH~~~~i~-~aD~vi~LgpgaG~~~G~i-v~~g~~~e~~~~~~~l---------------------~~~~l~~---- 597 (943)
T PRK00349 545 IVVEHDEDTIR-AADYIVDIGPGAGVHGGEV-VASGTPEEIMKNPNSL---------------------TGQYLSG---- 597 (943)
T ss_pred EEEeCCHHHHH-hCCEEEEeccccCCCCCEE-eeccCHHHHhcChhhe---------------------eehhhcc----
Confidence 99999999996 69999999 77775 6788877654311000 0000000
Q ss_pred hHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcH
Q 008750 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGK 463 (555)
Q Consensus 384 ~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGK 463 (555)
+. ....+. . . .......|++++++. ..|+++||+|+.||+++|+|+|||||
T Consensus 598 ~~--------------~~~~~~--~-------~-~~~~~~~L~v~~l~~-----~~L~~isl~Ip~GeivgVtGvsGSGK 648 (943)
T PRK00349 598 KK--------------KIEVPK--E-------R-RKGNGKFLKLKGARE-----NNLKNVDVEIPLGKFTCVTGVSGSGK 648 (943)
T ss_pred cc--------------cccccc--c-------c-cCCCcceEEecCCcc-----CCcCceEEEEeCCCEEEEEcCCCCCH
Confidence 00 000000 0 0 001234788999862 25999999999999999999999999
Q ss_pred HHHHHHHh
Q 008750 464 STLLKLIM 471 (555)
Q Consensus 464 STLlk~L~ 471 (555)
|||++.+.
T Consensus 649 STLl~~~l 656 (943)
T PRK00349 649 STLINETL 656 (943)
T ss_pred HHHHHHHH
Confidence 99998763
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=282.24 Aligned_cols=209 Identities=27% Similarity=0.365 Sum_probs=173.8
Q ss_pred ccEEEEeEEEEeCC-----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCCC-------
Q 008750 96 SGVKLENISKSYKG-----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~-----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~g~~------- 160 (555)
..+.++|++....+ +.+|+|||.++++||+.||+||+||||||||++|+|.... .+|+|.+||..
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~ 103 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFR 103 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhh
Confidence 34788899888843 5799999999999999999999999999999999999975 78999999932
Q ss_pred ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 161 ~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
..+|||.|+..+.+.+||+|.+..... +. .. ..+...+.+.+++
T Consensus 104 ~~s~yV~QdD~l~~~LTV~EtL~f~A~---------------lr-lp--------------------~~~~~~~k~~~V~ 147 (613)
T KOG0061|consen 104 KISGYVQQDDVLLPTLTVRETLRFSAL---------------LR-LP--------------------SSLSKEEKRERVE 147 (613)
T ss_pred heeEEEcccccccccccHHHHHHHHHH---------------hc-CC--------------------CCCCHHHHHHHHH
Confidence 358999999999999999998854210 00 00 0123356678899
Q ss_pred HHhhhcCCCccccCCCCC-----CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEE
Q 008750 241 KLMPELGFTADDGDRLVA-----SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVII 312 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~-----~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIii 312 (555)
+++.++|+. .-.|..+. .+|||||+||+||.-|+.+|.||+|||||+|||..+...+.+.|+ +.|+|||++
T Consensus 148 ~vi~~LgL~-~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~t 226 (613)
T KOG0061|consen 148 EVISELGLE-KCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICT 226 (613)
T ss_pred HHHHHcCCh-hhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEE
Confidence 999999997 45566665 599999999999999999999999999999999999888888775 359999999
Q ss_pred ecCH-HHHHhhcceeEEecCCeEeeccCChH
Q 008750 313 SHDR-AFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 313 SHd~-~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
=|.+ ..+-++.|++++|..|+. +|.|..+
T Consensus 227 IHQPss~lf~lFD~l~lLs~G~~-vy~G~~~ 256 (613)
T KOG0061|consen 227 IHQPSSELFELFDKLLLLSEGEV-VYSGSPR 256 (613)
T ss_pred EeCCcHHHHHHHhHhhhhcCCcE-EEecCHH
Confidence 9998 567788999999999964 6777554
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-29 Score=287.00 Aligned_cols=171 Identities=22% Similarity=0.312 Sum_probs=127.5
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.|..+||....+++++.+|||||+|||+||++|+.+| .+|||||||++||+.....|.++|+ +.|.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4778888643368999999999999999999999986 8999999999999999999988774 4689999999999
Q ss_pred HHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH
Q 008750 317 AFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (555)
Q Consensus 317 ~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (555)
+++. .||+|++| ++|++ ++.|++.++...... . ...+.. ++
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~I-v~~g~~~el~~~~~~---------------l------t~~~l~----~~------ 596 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEV-VASGTPEEILANPDS---------------L------TGQYLS----GK------ 596 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEE-eeccCHHHHhcCchh---------------e------eeeccc----cc------
Confidence 9996 89999999 77765 667776554221000 0 000000 00
Q ss_pred HHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008750 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (555)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk 468 (555)
.....+ .. .....+.+|++++++. ..|+++||+|+.|++++|+|+||||||||++
T Consensus 597 --------~~~~~~--~~--------~~~~~~~~l~l~~~~~-----~~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~ 651 (924)
T TIGR00630 597 --------KKIEVP--KE--------RRPGNGKFLTLKGARE-----NNLKNITVSIPLGLFTCITGVSGSGKSTLIN 651 (924)
T ss_pred --------cccccc--cc--------ccCCCcceEEEEeCcc-----CCcCceEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 000000 00 0011234789999873 2599999999999999999999999999998
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.2e-29 Score=295.82 Aligned_cols=170 Identities=22% Similarity=0.347 Sum_probs=126.6
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.|..+||.....++.+.+|||||+|||+||+||+.+| ++|||||||++||+...+.|.++|+ +.|.|||+||||+
T Consensus 459 ~L~~vGL~~L~ldR~~~tLSGGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd~ 538 (1809)
T PRK00635 459 ILIDLGLPYLTPERALATLSGGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHDE 538 (1809)
T ss_pred HHHhccccCCCCCCchhhCCHHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcH
Confidence 3557888644468999999999999999999999999 8999999999999999999888775 4689999999999
Q ss_pred HHHHhhcceeEEec------CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHH
Q 008750 317 AFLDQLCTKIVETE------MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390 (555)
Q Consensus 317 ~~l~~~~dri~~l~------~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 390 (555)
+++ ++||+|++|. +|++ ++.|+++++...... ....+.....
T Consensus 539 ~vi-~~aDrVi~L~pGag~~gG~I-v~~G~~~eil~~~~~---------------------l~~~~l~~~~--------- 586 (1809)
T PRK00635 539 QMI-SLADRIIDIGPGAGIFGGEV-LFNGSPREFLAKSDS---------------------LTAKYLRQEL--------- 586 (1809)
T ss_pred HHH-HhCCEEEEEcCCcccCCCEE-EEecCHHHHhhChHH---------------------HHHHHhcCcc---------
Confidence 955 7899999997 4454 577887765431110 0000000000
Q ss_pred HHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHH
Q 008750 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLK 468 (555)
Q Consensus 391 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk 468 (555)
....+ .........|++++++. ..|+++||+|+.||+|+|+|+||||||||++
T Consensus 587 ---------~~~~~-----------~~~~~~~~~L~l~~~~~-----~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 587 ---------TIPIP-----------EKRTNSLGTLTLSKATK-----HNLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred ---------cccCc-----------ccccCCCCeEEEecccc-----CCccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 00000 00001124688998873 2699999999999999999999999999999
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.5e-30 Score=231.38 Aligned_cols=124 Identities=38% Similarity=0.629 Sum_probs=102.2
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEEEecccccCcCccHHHHH
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAFLSQEFEVSMSRTVREEF 182 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~v~Q~~~~~~~~tv~e~~ 182 (555)
|+||||+|++|++++|+|+||||||||+++|+|.++|++|+|.+++.+ ..++|++|++.++...||.++.
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~~ 80 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVRENE 80 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHHH
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 789999999999999999999999999999999999999999998753 2599999998888888998872
Q ss_pred HHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC---ccccCCCCCC
Q 008750 183 MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT---ADDGDRLVAS 259 (555)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~---~~~~~~~~~~ 259 (555)
.. .++.++++.+++. ....++.+..
T Consensus 81 ~~----------------------------------------------------~~~~~~l~~l~~~~~~~~~~~~~~~~ 108 (137)
T PF00005_consen 81 SD----------------------------------------------------ERIEEVLKKLGLEDLLDRKIGQRASS 108 (137)
T ss_dssp HH----------------------------------------------------HHHHHHHHHTTHGGGTGSBGTSCGGG
T ss_pred cc----------------------------------------------------ccccccccccccccccccccccccch
Confidence 11 1122233333332 2334555599
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCC
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN 288 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs 288 (555)
|||||||||+||+||+.+|++||||||||
T Consensus 109 LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 109 LSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp SCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred hhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 99999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-29 Score=243.23 Aligned_cols=155 Identities=19% Similarity=0.285 Sum_probs=122.5
Q ss_pred eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc---------eEEEEcCCC-------ceEEEEecccccCcCcc
Q 008750 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS---------GNVIKAKSN-------MKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~---------G~I~~~g~~-------~~ig~v~Q~~~~~~~~t 177 (555)
++++|++.+| +++|+|+||||||||+++|+|++.|.. |.+.+.|.+ ..|+|++|++..++...
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~~ 92 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSII 92 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeEE
Confidence 6789999999 999999999999999999999987653 356555543 36999999987652100
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
. ..++.++++. ....++++
T Consensus 93 ~---------------------------------------------------------~~~~~~~l~~----~~~~~~~~ 111 (197)
T cd03278 93 S---------------------------------------------------------QGDVSEIIEA----PGKKVQRL 111 (197)
T ss_pred e---------------------------------------------------------hhhHHHHHhC----CCccccch
Confidence 0 0122233333 13456788
Q ss_pred CCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecC
Q 008750 258 ASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
.+||||||||++||++|+ .+|+++||||||++||+.....+.+.+++ .+.|||+||||++++. +||+++.+..
T Consensus 112 ~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~-~~d~v~~~~~ 190 (197)
T cd03278 112 SLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTME-AADRLYGVTM 190 (197)
T ss_pred hhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHh-hcceEEEEEe
Confidence 999999999999999986 46799999999999999999999998864 3689999999999884 7999998853
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-29 Score=234.36 Aligned_cols=129 Identities=33% Similarity=0.465 Sum_probs=115.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y 492 (555)
.|+++|+++.|++..+|+++||+|.+||+++|+||+|||||||||+|.++++|++|.|.++|.++ ++|+
T Consensus 2 mi~i~~l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGm 81 (240)
T COG1126 2 MIEIKNLSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGM 81 (240)
T ss_pred eEEEEeeeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCe
Confidence 58999999999999999999999999999999999999999999999999999999999998543 3689
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc-------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE-------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|+. .|+|.+||.||+..+.. ....+.+..+|.+.|+. +..+..|..|||||||||+||
T Consensus 82 VFQ~f--nLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~-~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 82 VFQQF--NLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLA-DKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred ecccc--cccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCch-hhhhhCccccCcHHHHHHHHH
Confidence 99984 68899999999987742 12234678899999995 678999999999999999986
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.5e-28 Score=240.09 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=137.6
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH--------cC--CCCCceEEEEcCCC-ceEEEEecccccC-cCccH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA--------GQ--EEPDSGNVIKAKSN-MKIAFLSQEFEVS-MSRTV 178 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~--------G~--~~p~~G~I~~~g~~-~~ig~v~Q~~~~~-~~~tv 178 (555)
.-|+|||++|+.|..++|.|.+|||||||++.+. +. ..|..++...+... ..+-+|.|.|--- +.-++
T Consensus 9 ~nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~ 88 (261)
T cd03271 9 NNLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNP 88 (261)
T ss_pred hcCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcH
Confidence 4699999999999999999999999999999662 11 12444443322211 2467788876321 11122
Q ss_pred ------HHHHHHhhHH---HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 179 ------REEFMSAFKE---EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 179 ------~e~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
.+++...|.+ ...+.. +.+.-... .....+.+.-...+...+... + .. ..++.++|+.+||.
T Consensus 89 ~ty~~~~~~ir~~fC~~C~G~r~~~--~~l~~~~~-g~~i~~v~~ltv~e~~~~~~~---~--~~-~~~~~~~L~~vgL~ 159 (261)
T cd03271 89 ATYTGVFDEIRELFCEVCKGKRYNR--ETLEVRYK-GKSIADVLDMTVEEALEFFEN---I--PK-IARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHHhcCccccccccCH--HHHhcCcC-CCCHHHHhcCCHHHHHHHHHh---h--hh-HHHHHHHHHHcCCc
Confidence 2221111000 000000 00000000 000000010011111111111 1 11 24567789999997
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccC---CCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~---p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
....++++.+|||||+||++||++|+.+ |+++||||||++||+..+..+.+.+++ .|.|||+||||++++. .|
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~a 238 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CA 238 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC
Confidence 5457899999999999999999999996 799999999999999999999887753 5899999999999996 69
Q ss_pred ceeEEe------cCCeEeeccC
Q 008750 324 TKIVET------EMGVSRTYEG 339 (555)
Q Consensus 324 dri~~l------~~G~~~~~~G 339 (555)
|+|++| ++|++ ++.|
T Consensus 239 D~ii~Lgp~~g~~~G~i-v~~G 259 (261)
T cd03271 239 DWIIDLGPEGGDGGGQV-VASG 259 (261)
T ss_pred CEEEEecCCcCCCCCEE-EEeC
Confidence 999999 67775 3444
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.8e-28 Score=239.72 Aligned_cols=182 Identities=20% Similarity=0.284 Sum_probs=126.2
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH----------------cCCCCCce--------E
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----------------GQEEPDSG--------N 153 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~----------------G~~~p~~G--------~ 153 (555)
|+++|. ++|++..++++++ |++++|+||||||||||+++|+ +++.+.+| +
T Consensus 4 i~~~nf-ksy~~~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~v~ 77 (243)
T cd03272 4 VIIQGF-KSYKDQTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAYVE 77 (243)
T ss_pred EEEeCc-cCcccCcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEEEE
Confidence 778887 6788888898887 7899999999999999999998 44555555 5
Q ss_pred EEEcCCC-------------ceEEEEecccccCcC-ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHH
Q 008750 154 VIKAKSN-------------MKIAFLSQEFEVSMS-RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219 (555)
Q Consensus 154 I~~~g~~-------------~~ig~v~Q~~~~~~~-~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (555)
|.+++.+ ..++|++|++.++.. .|..+.. ..+ ...
T Consensus 78 i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~-~~l-----------------~~~------------- 126 (243)
T cd03272 78 IIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVM-NLL-----------------ESA------------- 126 (243)
T ss_pred EEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHH-HHH-----------------HHc-------------
Confidence 5554321 126777777655442 3443321 110 000
Q ss_pred HHHHHHHHHhcCccc-----HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc----CCCEEEEcCCCCCC
Q 008750 220 FDLLQRKAQAVNLDT-----LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHL 290 (555)
Q Consensus 220 ~~~~~~~~~~~~~~~-----~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~----~p~lLlLDEPTs~L 290 (555)
.+.... ...++.++ +++. ...+.++.+||||||||++|||||+. +|++|||||||++|
T Consensus 127 ---------gl~~~~~~~~~~qg~i~~l---~~l~-~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~l 193 (243)
T cd03272 127 ---------GFSRSNPYYIVPQGKINSL---TNMK-QDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAAL 193 (243)
T ss_pred ---------CCCCCCCcEEEEcCchHHh---hhcc-ccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCC
Confidence 000000 01112222 2232 23467789999999999999999963 68999999999999
Q ss_pred CHHHHHHHHHHHcCC--CceEEEEecCHHHHHhhcceeEEec
Q 008750 291 DLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 291 D~~~~~~l~~~l~~~--~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
|+.+.+.+.+.|++. +.|+|++||+.+. ..+||+|++|.
T Consensus 194 d~~~~~~~~~~l~~~~~~~~ii~~~h~~~~-~~~~d~i~~l~ 234 (243)
T cd03272 194 DAQYRTAVANMIKELSDGAQFITTTFRPEL-LEVADKFYGVK 234 (243)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEEecCHHH-HhhCCEEEEEE
Confidence 999999998887653 6788888888764 57999999985
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.3e-28 Score=234.15 Aligned_cols=182 Identities=19% Similarity=0.200 Sum_probs=127.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEE-CCCEEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEc---------CCCceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKA---------KSNMKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~---------g~~~~ig~ 165 (555)
.|+++|+. +|.+. ++|+|... +|++++|+|+||||||||+++|++ ++-+..+....+ .....|++
T Consensus 5 ~i~l~nf~-~y~~~---~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~~~~~~~~~~~~~~v~~ 80 (213)
T cd03279 5 KLELKNFG-PFREE---QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGEDTAEVSF 80 (213)
T ss_pred EEEEECCc-CcCCc---eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchhHHHHhcCCCccEEEEE
Confidence 38899997 77554 55667654 589999999999999999999995 444443433321 01235888
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|+....+ ++..+. ... .....+.+ .+..
T Consensus 81 ~f~~~~~~~--~~~r~~--gl~--------------------------------------------~~~~~~~~--~l~~ 110 (213)
T cd03279 81 TFQLGGKKY--RVERSR--GLD--------------------------------------------YDQFTRIV--LLPQ 110 (213)
T ss_pred EEEECCeEE--EEEEec--CCC--------------------------------------------HHHHHHhh--hhhh
Confidence 888764321 111110 000 00000000 0111
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhcc----------CCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEE
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVII 312 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~----------~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIii 312 (555)
.++. ...++++.+|||||+||++||+||+. +|++|||||||++||+.+...+.+++++ .+.|+|+|
T Consensus 111 g~l~-~~l~~~~~~lS~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~i 189 (213)
T cd03279 111 GEFD-RFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVI 189 (213)
T ss_pred cchH-HHhcCCccccCHHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1221 34467889999999999999999985 6799999999999999999998887643 48899999
Q ss_pred ecCHHHHHhhcceeEEecCCe
Q 008750 313 SHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 313 SHd~~~l~~~~dri~~l~~G~ 333 (555)
|||++++..+||+|+++++|.
T Consensus 190 tH~~~~~~~~~~~i~~~~~~~ 210 (213)
T cd03279 190 SHVEELKERIPQRLEVIKTPG 210 (213)
T ss_pred ECchHHHHhhCcEEEEEecCC
Confidence 999999999999999999885
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.6e-27 Score=254.19 Aligned_cols=191 Identities=28% Similarity=0.417 Sum_probs=152.0
Q ss_pred CccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
...|+++||+..-++ ...+++.+|+|++||.+-|.|+||||||||+|+|+|+-|--+|+|.+. .+..+-|+||.|++
T Consensus 390 ~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P-~~~~~lflpQ~PY~- 467 (604)
T COG4178 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP-ADSALLFLPQRPYL- 467 (604)
T ss_pred cceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC-CCCceEEecCCCCC-
Confidence 577999999999864 679999999999999999999999999999999999999999999887 44568999999988
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc--
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD-- 251 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-- 251 (555)
+..|.+|-++.+.... . --++.+.++|.++||.+.
T Consensus 468 p~GtLre~l~YP~~~~----------------~---------------------------~~d~~l~~vL~~vgL~~L~~ 504 (604)
T COG4178 468 PQGTLREALCYPNAAP----------------D---------------------------FSDAELVAVLHKVGLGDLAE 504 (604)
T ss_pred CCccHHHHHhCCCCCC----------------C---------------------------CChHHHHHHHHHcCcHHHHH
Confidence 5669999887543110 0 001122223333333210
Q ss_pred ---ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhccee
Q 008750 252 ---DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 252 ---~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri 326 (555)
..++=-..||+|||||+++||.|+++|++++|||.|++||+++...+.+++++ .+.|||-|+|+..... +.++.
T Consensus 505 rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~-~h~~~ 583 (604)
T COG4178 505 RLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWN-FHSRQ 583 (604)
T ss_pred HHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHH-HHhhh
Confidence 00111137999999999999999999999999999999999999999999998 7999999999987774 67777
Q ss_pred EEecC
Q 008750 327 VETEM 331 (555)
Q Consensus 327 ~~l~~ 331 (555)
+.+.+
T Consensus 584 l~l~~ 588 (604)
T COG4178 584 LELLD 588 (604)
T ss_pred eeecc
Confidence 77654
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-28 Score=233.67 Aligned_cols=130 Identities=38% Similarity=0.507 Sum_probs=115.8
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecCC
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQ 497 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~~ 497 (555)
..++++++++.|+...+|+++||+|.+||+|+|+||+|||||||||+|+|+.+|++|+|.++|..+ ..+|++|++
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~vFQ~~ 81 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGYVFQED 81 (248)
T ss_pred ceEEEEeeEEEeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEEEeccC
Confidence 358999999999988899999999999999999999999999999999999999999999998765 468999985
Q ss_pred ccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 498 AEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.|.|.+||.+|+...... ...+.+..+|+.+|+. +..+++|++|||||||||+||
T Consensus 82 --~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~-~~~~~~P~qLSGGMrQRVaiA 142 (248)
T COG1116 82 --ALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLA-GFEDKYPHQLSGGMRQRVAIA 142 (248)
T ss_pred --cccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCc-chhhcCccccChHHHHHHHHH
Confidence 588999999999865431 1234689999999996 588999999999999999986
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.9e-27 Score=250.37 Aligned_cols=205 Identities=22% Similarity=0.369 Sum_probs=170.8
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------e
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------K 162 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ 162 (555)
..+.++++|++.. ..++|+||++++||++||.|--|||+|-|+++|.|..++.+|+|.++|.+. .
T Consensus 260 ~~~~l~v~~l~~~----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~G 335 (500)
T COG1129 260 GEPVLEVRNLSGG----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAG 335 (500)
T ss_pred CCcEEEEecCCCC----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcC
Confidence 4567889998743 269999999999999999999999999999999999999999999999642 5
Q ss_pred EEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 163 IAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 163 ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
|+|||.|- .++..++|.+|+..+.. ... .... .++.....+.+
T Consensus 336 i~~v~EDRk~~Gl~l~~sI~~Ni~l~~l---------~~~------------------------~~~~-~i~~~~e~~~~ 381 (500)
T COG1129 336 IAYVPEDRKSEGLVLDMSIAENITLASL---------RRF------------------------SRRG-LIDRRKERALA 381 (500)
T ss_pred CEeCCcccccCcCcCCCcHHHheehHhh---------hhh------------------------cccc-ccChHHHHHHH
Confidence 99999874 46678899999854310 000 0000 12233344567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.++...+++.....+.++.+||||-+|||.|||.|+.+|+||||||||-|.|+-++..+.++++ +.|++||+||-++
T Consensus 382 ~~~~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSEl 461 (500)
T COG1129 382 ERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSEL 461 (500)
T ss_pred HHHHHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 7888899998878889999999999999999999999999999999999999999998888765 5799999999999
Q ss_pred HHHHhhcceeEEecCCeEee
Q 008750 317 AFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~ 336 (555)
.++..+||||+||.+|++.-
T Consensus 462 pEll~~~DRIlVm~~Gri~~ 481 (500)
T COG1129 462 PELLGLSDRILVMREGRIVG 481 (500)
T ss_pred HHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=242.19 Aligned_cols=186 Identities=25% Similarity=0.427 Sum_probs=145.0
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
..++..++++.|++. .|+-=.=+|..||+++++||||-||||+.++|+|.++|++|. ..+.+|+|=||-....+.
T Consensus 341 ~lv~y~~~~k~~g~F-~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~~~vSyKPQyI~~~~~ 415 (591)
T COG1245 341 TLVEYPDLKKTYGDF-KLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EEDLKVSYKPQYISPDYD 415 (591)
T ss_pred eeeecchheeecCce-EEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----CccceEeecceeecCCCC
Confidence 345556666666532 233334456777999999999999999999999999999998 356789999998877788
Q ss_pred ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCC
Q 008750 176 RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255 (555)
Q Consensus 176 ~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~ 255 (555)
.||.+.+....... +. -.....+++.-|.|. ...++
T Consensus 416 gtV~~~l~~~~~~~-------------~~------------------------------~s~~~~ei~~pl~l~-~i~e~ 451 (591)
T COG1245 416 GTVEDLLRSAIRSA-------------FG------------------------------SSYFKTEIVKPLNLE-DLLER 451 (591)
T ss_pred CcHHHHHHHhhhhh-------------cc------------------------------cchhHHhhcCccchH-HHHhc
Confidence 99998875432110 00 001123345556664 46789
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
++.+|||||.|||+||.+|..++|++|||||+++||++.+-.....+ .+.++|.++|.||+.+++.++||+++.+
T Consensus 452 ~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 452 PVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999999999999999999999999999998766555544 4578999999999999999999999886
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.6e-27 Score=226.76 Aligned_cols=133 Identities=32% Similarity=0.507 Sum_probs=120.0
Q ss_pred ceEEEEeeeEEcCCcc----ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 423 SVVTIKNLEFGYEDRL----LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~----ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
+.|+++|+++.|+... ++++|||+|.+||+++|+|++|||||||+++|+|+.+|++|+|.++|..+
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~ 81 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFY 81 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhc
Confidence 4689999999998776 99999999999999999999999999999999999999999999998533
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+++|||...++|..||.+.+.+... +..+.++..+|..+|++++.++|.|+.|||||+||++||
T Consensus 82 ~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 82 RPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred cceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHH
Confidence 2458999999999999999999988753 123455899999999999999999999999999999986
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.2e-27 Score=230.15 Aligned_cols=132 Identities=34% Similarity=0.533 Sum_probs=114.6
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-------eeeEEEec
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------VLPNYFEQ 495 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~-------~~~~y~~Q 495 (555)
+.|+++|+++.|++.++|+++||+|++|+.++|+||||+|||||+|+|+|+++|.+|+|.+.+.+ .++||+||
T Consensus 3 ~~i~v~nl~v~y~~~~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ 82 (254)
T COG1121 3 PMIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQ 82 (254)
T ss_pred cEEEEeeeEEEECCEeeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCc
Confidence 46899999999986579999999999999999999999999999999999999999999987653 46899999
Q ss_pred CCccCCCCCCCHHHHHHhhccc----------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
......++..||.|.+...... ...+.+...|.+.|+. +..++++..|||||+|||.||
T Consensus 83 ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~-~~~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 83 KSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGME-DLRDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred ccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCch-hhhCCcccccCcHHHHHHHHH
Confidence 7544566788999999865221 1135789999999996 789999999999999999886
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=236.93 Aligned_cols=188 Identities=17% Similarity=0.235 Sum_probs=135.9
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCC-------------CceE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKS-------------NMKI 163 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~-------------~~~i 163 (555)
|.++|. ++|.+..++.+++ ..+++|||+||||||||+++|++++.|+ .|++.+.+. ...|
T Consensus 6 ~~~~~f-~~~~~~~~~~~~~-----~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v 79 (251)
T cd03273 6 IILDGF-KSYATRTVISGFD-----PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASV 79 (251)
T ss_pred EEEeCc-cccCcCEeeccCC-----CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEE
Confidence 677777 6776554443332 4599999999999999999999999876 456665432 1268
Q ss_pred EEEecccc---------cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC-cc
Q 008750 164 AFLSQEFE---------VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN-LD 233 (555)
Q Consensus 164 g~v~Q~~~---------~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 233 (555)
++++|++. +.+..||.+++....... ..++ ..
T Consensus 80 ~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~--------------------------------------~~in~~~ 121 (251)
T cd03273 80 TIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNK--------------------------------------YLINGHR 121 (251)
T ss_pred EEEEEcCCcccCcccccCCceEEEEEEEEcCCceE--------------------------------------EEECCEE
Confidence 99999852 233556665542110000 0001 11
Q ss_pred cHHHHHHHHhhhcCCCc-------------------cccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCC
Q 008750 234 TLDAKVSKLMPELGFTA-------------------DDGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHL 290 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~-------------------~~~~~~~~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~L 290 (555)
...+++.++|+.+|+.. ...++++.+||||||||++||+||+ .+|++|||||||++|
T Consensus 122 ~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~l 201 (251)
T cd03273 122 AQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAAL 201 (251)
T ss_pred eeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCC
Confidence 22355666777777641 2346788999999999999999998 578999999999999
Q ss_pred CHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEec
Q 008750 291 DLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 291 D~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
|+...+++.+.|++ .|.|+|+|||+.+.+. .||+|+-+.
T Consensus 202 d~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~-~~d~v~~~~ 242 (251)
T cd03273 202 DLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFN-NANVLFRTR 242 (251)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEE
Confidence 99999999998864 4789999999977775 699998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.9e-26 Score=231.58 Aligned_cols=351 Identities=23% Similarity=0.365 Sum_probs=202.8
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--eEEEEecc-cccCcCccHHHHHHHhhHHHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--KIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--~ig~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (555)
++|++.|+||.||.||||-+++++|-++|.-|.-... .+. -++|..-. ..-+|..-+.+++-.....+. +.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~p-p~w~~il~~frgselq~yftk~le~~lk~~~kpQy-----vd 171 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDNP-PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQY-----VD 171 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCCC-cchHHHhhhhhhHHHhhhhhhhccccccCcCChHH-----HH
Confidence 5899999999999999999999999999987753211 100 11221100 000011111111111100000 00
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 008750 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (555)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~ 277 (555)
.+-+.... .++..++.. .-.....+++..+.|. ...+|.+..|||||-||.+||.+.+++
T Consensus 172 ~ipr~~k~------~v~~~l~~~-------------~~r~~~~~~~~~~~L~-~~~~re~~~lsggelqrfaia~~~vq~ 231 (592)
T KOG0063|consen 172 QIPRAVKG------TVGSLLDRK-------------DERDNKEEVCDQLDLN-NLLDREVEQLSGGELQRFAIAMVCVQK 231 (592)
T ss_pred HHHHHHHH------HHHHHHHHH-------------hhcccHHHHHHHHHHh-hHHHhhhhhcccchhhhhhhhhhhhhh
Confidence 00000000 011111110 0111334455555554 356788899999999999999999999
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecC-----CeEeeccCChHHHHHHHH
Q 008750 278 PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEM-----GVSRTYEGNYSQYVLEKA 349 (555)
Q Consensus 278 p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~-----G~~~~~~G~y~~~~~~~~ 349 (555)
.++.++|||.+.||+..+......++ .-+.-||+|.||++.++.+.|-|..+-. |.+. -+|+-
T Consensus 232 advyMFDEpSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLYGvp~aYGVVT---~Pfsv------ 302 (592)
T KOG0063|consen 232 ADVYMFDEPSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLYGVPSAYGVVT---MPFSV------ 302 (592)
T ss_pred cceeEecCCcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEecCCccceEEE---eccch------
Confidence 99999999999999987655444433 4567899999999999999999988742 1111 11110
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEe
Q 008750 350 AWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429 (555)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 429 (555)
.+.++-+-.+-.. . +. ..+......|.+.+... + +=+-
T Consensus 303 --------------------r~giniFl~g~ip--t------------en---~rfR~~~l~f~~~~~~~--~---ek~~ 340 (592)
T KOG0063|consen 303 --------------------REGINIFLDGLIP--T------------EN---LRFRPECLVFLASDLSS--E---DRRT 340 (592)
T ss_pred --------------------hhhhhhhhhccCC--c------------cc---ccccchhheeeeccccc--h---hhhh
Confidence 0000000000000 0 00 00001111222211110 0 0011
Q ss_pred eeEEcCC-ccceeceEEEEecCC-----EEEEECCCCCcHHHHHHHHhCCCCCCceE-EEECCceeeeEEEecCCccCCC
Q 008750 430 LEFGYED-RLLFNRANLTIERGE-----KTAIIGPNGCGKSTLLKLIMGLEKPRGGE-VLLGEHNVLPNYFEQNQAEALD 502 (555)
Q Consensus 430 l~~~y~~-~~ll~~vsl~i~~Ge-----~iaI~G~NGsGKSTLlk~L~G~~~p~~G~-v~~~~~~~~~~y~~Q~~~~~l~ 502 (555)
-.+.|++ +..+-++.|.|..|| ++..+|.||.|||||+++++|.++|+.|. | +.+.+.|-+|... --
T Consensus 341 ~~y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~----p~lnVSykpqkis--pK 414 (592)
T KOG0063|consen 341 GRYSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEI----PVLNVSYKPQKIS--PK 414 (592)
T ss_pred heeccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCcc----cccceeccccccC--cc
Confidence 1234654 346777889999884 78999999999999999999999999873 3 2346778898642 22
Q ss_pred CCCCHHHHHHhhcccC--cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 503 LDKTVLETVAEAAEDW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 503 ~~~tv~e~l~~~~~~~--~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
..-||.+.+...-.+. ..+-+......+.+ ....++.+..|||||+|||+||
T Consensus 415 ~~~tvR~ll~~kIr~ay~~pqF~~dvmkpL~i-e~i~dqevq~lSggelQRval~ 468 (592)
T KOG0063|consen 415 REGTVRQLLHTKIRDAYMHPQFVNDVMKPLQI-ENIIDQEVQGLSGGELQRVALA 468 (592)
T ss_pred ccchHHHHHHHHhHhhhcCHHHHHhhhhhhhH-HHHHhHHhhcCCchhhHHHHHH
Confidence 4457777776543221 11234445555555 3567899999999999999985
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.7e-28 Score=217.35 Aligned_cols=194 Identities=30% Similarity=0.358 Sum_probs=155.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFL 166 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v 166 (555)
+++++||... +=|-.+|.++..||++-+|||||||||||+-.++|++ |-+|+|.++|.+. .-+|+
T Consensus 3 l~qln~v~~~----tRL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 3 LMQLNDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeecccccc----ccccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 4678888653 2366789999999999999999999999999999997 6799999999763 35888
Q ss_pred ecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc
Q 008750 167 SQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL 246 (555)
Q Consensus 167 ~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 246 (555)
.|+..-.|.+.|+.++.... +.......+..+...+
T Consensus 78 sQqq~p~f~mpV~~YL~L~q--------------------------------------------P~~~~a~~i~~i~~~L 113 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQ--------------------------------------------PDKTRTELLNDVAGAL 113 (248)
T ss_pred hhccCCcchhhhhhhhhhcC--------------------------------------------chHHHHHHHHHHHhhh
Confidence 88877777788887764211 0112233456677778
Q ss_pred CCCccccCCCCCCCChHHHHHHHHHHHhcc-----CC--CEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCH
Q 008750 247 GFTADDGDRLVASFSSGWQMRMSLGKILLQ-----DP--DLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (555)
Q Consensus 247 gl~~~~~~~~~~~LSGGqrqRv~lAraL~~-----~p--~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~ 316 (555)
+++ +.+.|.++.|||||-|||-||...++ || ++||||||.|+||+.....|..+| ...|.+|||.+||+
T Consensus 114 ~l~-DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDL 192 (248)
T COG4138 114 ALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDL 192 (248)
T ss_pred ccc-chhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccch
Confidence 886 56789999999999999999998876 33 699999999999998777666655 45799999999999
Q ss_pred HHHHhhcceeEEecCCeEeeccCCh
Q 008750 317 AFLDQLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 317 ~~l~~~~dri~~l~~G~~~~~~G~y 341 (555)
+--.+-||++|.+..|++. ..|.-
T Consensus 193 NhTLrhA~~~wLL~rG~l~-~~G~~ 216 (248)
T COG4138 193 NHTLRHAHRAWLLKRGKLL-ASGRR 216 (248)
T ss_pred hhHHHHHHHHHHHhcCeEE-eecch
Confidence 9888899999999999874 34543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.8e-27 Score=240.01 Aligned_cols=131 Identities=31% Similarity=0.505 Sum_probs=116.8
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
...++++|+++.|++..+++++||+|++||.++|+||||||||||||+|+|++.|++|+|.++|.++ .++++
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~kR~ig~V 82 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEKRPIGMV 82 (352)
T ss_pred CceEEEEeeeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhhccccee
Confidence 3579999999999988999999999999999999999999999999999999999999999999876 25899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc-c--Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE-D--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~--~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|+. .|+|.+||.+|++.... . .. ...+..+|..+++. +..+|+|+.|||||||||+||
T Consensus 83 FQ~Y--ALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~-~~~~R~p~qLSGGQqQRVALA 148 (352)
T COG3842 83 FQSY--ALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLE-GFADRKPHQLSGGQQQRVALA 148 (352)
T ss_pred ecCc--ccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCch-hhhhhChhhhChHHHHHHHHH
Confidence 9984 69999999999987654 1 11 23678899999996 488999999999999999987
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=225.32 Aligned_cols=200 Identities=24% Similarity=0.338 Sum_probs=147.7
Q ss_pred ccEEEEeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 96 SGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 96 ~~i~l~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
..|+++||.|.|... .=+..||++|++||++-|||.||||||||+++++|+++|++|+|.+||.+..
T Consensus 321 ~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~------------ 388 (546)
T COG4615 321 KTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVS------------ 388 (546)
T ss_pred cceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCC------------
Confidence 459999999999765 5688999999999999999999999999999999999999999999987531
Q ss_pred CccHHHH--HHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc-
Q 008750 175 SRTVREE--FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD- 251 (555)
Q Consensus 175 ~~tv~e~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~- 251 (555)
..+..++ +.++. ..|..+...+ -..+....++.+..+|+.+.+.+.
T Consensus 389 ~e~ledYR~LfSav--------------------FsDyhLF~~l-----------l~~e~~as~q~i~~~LqrLel~~kt 437 (546)
T COG4615 389 AEQLEDYRKLFSAV--------------------FSDYHLFDQL-----------LGPEGKASPQLIEKWLQRLELAHKT 437 (546)
T ss_pred CCCHHHHHHHHHHH--------------------hhhHhhhHhh-----------hCCccCCChHHHHHHHHHHHHhhhh
Confidence 1111111 00000 0000000000 001111234455666666555321
Q ss_pred -ccCC--CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH----HcCCCceEEEEecCHHHHHhhcc
Q 008750 252 -DGDR--LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 252 -~~~~--~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~----l~~~~~tvIiiSHd~~~l~~~~d 324 (555)
..+. .+-.||.|||+|+++--||+-+-+|++|||=-+.-||.-++++... |++.|+||+.||||-..-. .||
T Consensus 438 sl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~-~AD 516 (546)
T COG4615 438 SLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFI-HAD 516 (546)
T ss_pred cccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhh-hHH
Confidence 2222 2347999999999999999999999999999999999999998874 5789999999999966553 699
Q ss_pred eeEEecCCeEeeccC
Q 008750 325 KIVETEMGVSRTYEG 339 (555)
Q Consensus 325 ri~~l~~G~~~~~~G 339 (555)
|++.+++|++....|
T Consensus 517 rll~~~~G~~~e~tg 531 (546)
T COG4615 517 RLLEMRNGQLSELTG 531 (546)
T ss_pred HHHHHhcCceeeccc
Confidence 999999999877665
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=231.98 Aligned_cols=191 Identities=17% Similarity=0.204 Sum_probs=132.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
|+++|+. .|++..++++++| ++++|+||||||||||+++|+-..-.+...+ ...++++++|+...++..+
T Consensus 6 l~l~nfk-~~~~~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G~~~~~~----~~~~i~~~~~~~~~~~~~~ 75 (212)
T cd03274 6 LVLENFK-SYAGEQVIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFGFRASKM----RQKKLSDLIHNSAGHPNLD 75 (212)
T ss_pred EEEECcc-cCCCCeeeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhccCHHHh----hhhhHHHHhcCCCCCCCCc
Confidence 7889985 8999999999998 8999999999999999999983211110000 1135788888877766667
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHH--HHHHHhhhcCCCccccCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDA--KVSKLMPELGFTADDGDR 255 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~lgl~~~~~~~ 255 (555)
+.++....-.. ...+.+ . ...+....... ...++++.++++ +..++
T Consensus 76 ~~~~~~~~~~~-------------------~~~~~l-----------~-~~g~~~~~~~~~v~~~~~~~~~~L~-~~~~~ 123 (212)
T cd03274 76 SCSVEVHFQEI-------------------IDKPLL-----------K-SKGIDLDHNRFLILQGEVEQIAQMP-KKSWK 123 (212)
T ss_pred eEEEEEEEEeC-------------------CCHHHH-----------H-HCCcCCCCCceEEcCCcEEEeeccc-ccccc
Confidence 66643211000 000000 0 00000000000 114455667775 44577
Q ss_pred CCCCCChHHHHHHHHHHHhcc----CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 256 LVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~----~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
++..||+|||||++||+|++. +|+++||||||++||+.++.++.+.+++ .+.|+|+|||+.+ +..+||+|++|
T Consensus 124 ~~~~lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~-~~~~~d~v~~~ 202 (212)
T cd03274 124 NISNLSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNN-MFELADRLVGI 202 (212)
T ss_pred chhhcCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHH-HHHhCCEEEEE
Confidence 789999999999999999974 5899999999999999999999998864 3679999999965 55789999998
Q ss_pred cC
Q 008750 330 EM 331 (555)
Q Consensus 330 ~~ 331 (555)
..
T Consensus 203 ~~ 204 (212)
T cd03274 203 YK 204 (212)
T ss_pred Ee
Confidence 53
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=227.52 Aligned_cols=129 Identities=35% Similarity=0.552 Sum_probs=112.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.++++|++++|+++++++++||+|++||+++|+||||||||||||+|+|+++|.+|+|.++|+++ .++|+
T Consensus 2 ~L~~~~ls~~y~~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~v 81 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYV 81 (258)
T ss_pred eeEEEEEEEEECCeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEe
Confidence 47999999999999999999999999999999999999999999999999999999999999866 36899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc-------cCcH---HHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE-------DWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-------~~~~---~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|.+ ......||.|.+..... .++. +.+...|..+++. +..+|++.+|||||||||.||
T Consensus 82 pQ~~--~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~-~la~r~~~~LSGGerQrv~iA 150 (258)
T COG1120 82 PQSP--SAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLE-HLADRPVDELSGGERQRVLIA 150 (258)
T ss_pred ccCC--CCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcH-HHhcCcccccChhHHHHHHHH
Confidence 9985 46677899999976521 1222 2477789999995 688999999999999999886
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=234.36 Aligned_cols=129 Identities=34% Similarity=0.494 Sum_probs=114.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|..||.++|+||||||||||||+|+|+++|++|+|.++|.++ .+++++|
T Consensus 3 ~i~l~~v~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~R~iamVFQ 82 (338)
T COG3839 3 ELELKNVRKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEKRGIAMVFQ 82 (338)
T ss_pred EEEEeeeEEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhHCCEEEEeC
Confidence 47999999999875489999999999999999999999999999999999999999999999876 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+. .|.|..||.+|+..... ......++...+.+++. ..++|+|..|||||||||+||
T Consensus 83 ~y--ALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~-~lL~r~P~~LSGGQrQRVAla 145 (338)
T COG3839 83 NY--ALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLE-HLLNRKPLQLSGGQRQRVALA 145 (338)
T ss_pred Cc--cccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCCh-hHHhcCcccCChhhHHHHHHH
Confidence 84 68899999999987643 12245688889999995 589999999999999999986
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-26 Score=221.37 Aligned_cols=168 Identities=23% Similarity=0.336 Sum_probs=123.7
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH----cCCCCCceEEEEc-------CCCceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA----GQEEPDSGNVIKA-------KSNMKIAFL 166 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~----G~~~p~~G~I~~~-------g~~~~ig~v 166 (555)
|+++|+. +| .+..++++.+| +++|+|+||||||||+++|. |...|+.|.+..+ .....|+++
T Consensus 4 l~l~nfr-~~-----~~~~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~~~~~~~v~~~ 76 (204)
T cd03240 4 LSIRNIR-SF-----HERSEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLA 76 (204)
T ss_pred EEEECcc-cc-----cCceEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhCCCCcEEEEEE
Confidence 5666663 22 12234566677 99999999999999999995 9999988865411 122368999
Q ss_pred ecccc-----cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 167 SQEFE-----VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 167 ~Q~~~-----~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+|++. +....|+.+++.... +..+.+
T Consensus 77 f~~~~~~~~~v~r~~~~~~~~~~~~-------------------------------------------------~~~~~~ 107 (204)
T cd03240 77 FENANGKKYTITRSLAILENVIFCH-------------------------------------------------QGESNW 107 (204)
T ss_pred EEeCCCCEEEEEEEhhHhhceeeec-------------------------------------------------hHHHHH
Confidence 99872 222336666553210 001111
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHH------HHHHHHhccCCCEEEEcCCCCCCCHHHHH-HHHHHHcC---C-CceEE
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMR------MSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGK---Q-DVPMV 310 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqR------v~lAraL~~~p~lLlLDEPTs~LD~~~~~-~l~~~l~~---~-~~tvI 310 (555)
. .++++.+||+||+|| ++||+||+.+|+++||||||++||+.... ++.+++.+ . +.|||
T Consensus 108 ~----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~ii 177 (204)
T cd03240 108 P----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLI 177 (204)
T ss_pred H----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEE
Confidence 1 156678999999996 78999999999999999999999999999 88888743 2 78999
Q ss_pred EEecCHHHHHhhcceeEEecCC
Q 008750 311 IISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G 332 (555)
+|||+++++. .||+|++|++.
T Consensus 178 iitH~~~~~~-~~d~i~~l~~~ 198 (204)
T cd03240 178 VITHDEELVD-AADHIYRVEKD 198 (204)
T ss_pred EEEecHHHHh-hCCEEEEEeeC
Confidence 9999999885 69999999754
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-25 Score=216.27 Aligned_cols=129 Identities=37% Similarity=0.487 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
++++|+++.|.. ..+|+++||+|++||.++|+||+||||||||++|.|+.+|++|.|.++|.++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 578999998864 2689999999999999999999999999999999999999999999998655
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc----c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE----D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+||++|+. .|-+..||.||+..... . .....+..++..+|+.....+++|..|||||||||+||
T Consensus 82 ~~~iGfvFQ~~--nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA 154 (226)
T COG1136 82 RKKIGFVFQNF--NLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA 154 (226)
T ss_pred HHhEEEECccC--CCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence 378999984 57799999999985321 1 12345778899999975555588999999999999986
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.4e-26 Score=216.87 Aligned_cols=129 Identities=31% Similarity=0.485 Sum_probs=115.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEEe
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYFE 494 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~~ 494 (555)
|+++|+++.|+++.+++++||+|..||.+.++||+||||||+||+|.++.+|++|+|.++|.++ ++||+-
T Consensus 2 I~~~nvsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYvi 81 (309)
T COG1125 2 IEFENVSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVI 81 (309)
T ss_pred ceeeeeehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhh
Confidence 6899999999999999999999999999999999999999999999999999999999999866 378999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCcH----HHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWRI----DDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~~----~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
|.. .|+|..||.+|++.... .|.. ..+.++|..+|+.+ +..+|.|++|||||+|||.+|
T Consensus 82 Qqi--gLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 82 QQI--GLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhc--ccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHH
Confidence 974 69999999999986543 4443 45788999999986 689999999999999999754
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=242.97 Aligned_cols=203 Identities=25% Similarity=0.334 Sum_probs=151.3
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC---CceEEEEcCCC-------ceEEEEecccccCcCccHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP---DSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p---~~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~ 179 (555)
..+|+|+|.-+++|+.+.++|+.|||||||++.++|.+.- ..|+|.++|.+ ..++|.+|+..-.+.+||+
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~DvH~p~lTVr 207 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQDVHFPELTVR 207 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEeccccccccceeEEe
Confidence 3699999999999999999999999999999999998753 35699999864 3589999998777999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc----ccCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD----DGDR 255 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~----~~~~ 255 (555)
|-+-.+.+ +..... +.++..+ .+......+.+++.+|+++. ..|.
T Consensus 208 eTldFa~r---------------ck~~~~----------r~~~~~R------~e~~~~~~d~~lkilGL~~~~dT~VGnd 256 (1391)
T KOG0065|consen 208 ETLDFAAR---------------CKGPGS----------RYDEVSR------REKLAAMTDYLLKILGLDHCADTLVGND 256 (1391)
T ss_pred ehhhHHHh---------------ccCCcc----------ccccccH------HHHHHHHHHHHHHHhCchhhccceeccc
Confidence 97643211 000000 0000000 00111245677888898642 3466
Q ss_pred CCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCH-HHHHhhcceeEEec
Q 008750 256 LVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDR-AFLDQLCTKIVETE 330 (555)
Q Consensus 256 ~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~-~~l~~~~dri~~l~ 330 (555)
.++..|||||+||.+|-+++.+|.++.+||+|.|||..+.-.+.+.|+. .+.|+++.=|.. ..+-.+-|.|++|.
T Consensus 257 ~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~ 336 (1391)
T KOG0065|consen 257 MVRGVSGGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLS 336 (1391)
T ss_pred ccccccCcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeee
Confidence 6778999999999999999999999999999999999887777776653 467777766654 55667889999999
Q ss_pred CCeEeeccCChHHH
Q 008750 331 MGVSRTYEGNYSQY 344 (555)
Q Consensus 331 ~G~~~~~~G~y~~~ 344 (555)
+|.. +|.|++++.
T Consensus 337 eG~~-iy~Gp~d~~ 349 (1391)
T KOG0065|consen 337 EGYQ-IYQGPRDEV 349 (1391)
T ss_pred ccce-EEeccHHHH
Confidence 9986 566766543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.5e-25 Score=210.51 Aligned_cols=132 Identities=30% Similarity=0.434 Sum_probs=117.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
.++|++++++++|+++.+++++||+|++||+++|+||+|||||||||+|.|+++|++|+|++.|.++
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred cceEEEeeeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999998876
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc---cCcHH----HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWRID----DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~~~----~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+.|+++|+ ..|+.+.||.||++.... ..... -+..-|+..|++++..++.|++||||++.|++||
T Consensus 86 r~GvlFQ~--gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLA 157 (263)
T COG1127 86 RMGVLFQQ--GALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALA 157 (263)
T ss_pred heeEEeec--cccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHH
Confidence 26899997 479999999999986432 23333 3555689999999889999999999999999987
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-24 Score=224.44 Aligned_cols=211 Identities=25% Similarity=0.418 Sum_probs=177.4
Q ss_pred CCCccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 93 SISSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
+..+.++++|++..-. +.+.+++|||+|++||++||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|.+.
T Consensus 253 pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r 332 (501)
T COG3845 253 PGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERR 332 (501)
T ss_pred CCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHH
Confidence 4578899999998764 35789999999999999999999999999999999999999999999999763
Q ss_pred --eEEEEeccc---ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 --KIAFLSQEF---EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 --~ig~v~Q~~---~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.++|||.|- .+.+.+|+.||+....... + .+... ..++...+.
T Consensus 333 ~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~-------------------~------------~~~~~-g~l~~~~i~ 380 (501)
T COG3845 333 RLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDK-------------------K------------PFSRG-GFLDRRAIR 380 (501)
T ss_pred hcCCccCChhhccCccccCccHHHHhhhhhccc-------------------c------------ccccc-cccCHHHHH
Confidence 589999985 4557889999975421100 0 00000 023445567
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEe
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIIS 313 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiS 313 (555)
..+.++++++++.......++.+||||.+||+-+||-|..+|++||+.+||-|||..+.+.+.+.| ++.|+.|++||
T Consensus 381 ~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS 460 (501)
T COG3845 381 KFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLIS 460 (501)
T ss_pred HHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 788889999999766677888999999999999999999999999999999999999999998876 45799999999
Q ss_pred cCHHHHHhhcceeEEecCCeEe
Q 008750 314 HDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~ 335 (555)
-|++++..+||||.+|.+|++.
T Consensus 461 ~dLDEil~lsDrIaVi~~Gri~ 482 (501)
T COG3845 461 EDLDEILELSDRIAVIYEGRIV 482 (501)
T ss_pred hhHHHHHHhhheeeeeeCCcee
Confidence 9999999999999999999874
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.8e-25 Score=216.29 Aligned_cols=131 Identities=37% Similarity=0.551 Sum_probs=113.4
Q ss_pred ceEEEEeeeEEcCCc-cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------e
Q 008750 423 SVVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------P 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~-~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-----------~ 490 (555)
..+++++++|.|++. .+++++||+|.+||+++|+|+||||||||+++|.|+++|++|.|.++|.++. +
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~v 81 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKV 81 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcce
Confidence 468899999999875 8999999999999999999999999999999999999999999999886533 7
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhccc--CcH----HHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAED--WRI----DDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~~----~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
||++|+|.+++ ...||.++++..... ... ..+...|..+++. +..+++|+.|||||||||+||
T Consensus 82 G~VfQnpd~q~-~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~-~~~~r~p~~LSGGqkqRvaIA 150 (235)
T COG1122 82 GLVFQNPDDQL-FGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLE-ELLDRPPFNLSGGQKQRVAIA 150 (235)
T ss_pred EEEEECccccc-ccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCch-hhccCCccccCCcceeeHHhh
Confidence 99999986544 777999999876432 222 3477889999996 468999999999999999997
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.7e-24 Score=243.19 Aligned_cols=107 Identities=21% Similarity=0.280 Sum_probs=92.5
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC---CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p---~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi 311 (555)
+..++|..+||.....++++.+|||||+||+.||++|+.+| +++||||||++||+..+..|.+.|+ +.|.|||+
T Consensus 809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34678999999754578899999999999999999999999 9999999999999999999888775 35899999
Q ss_pred EecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~ 346 (555)
|||+++++. .||+|++| ++|++ ++.|..+++..
T Consensus 889 itH~~~~i~-~aD~ii~Lgp~~G~~~G~I-v~~Gt~~el~~ 927 (943)
T PRK00349 889 IEHNLDVIK-TADWIIDLGPEGGDGGGEI-VATGTPEEVAK 927 (943)
T ss_pred EecCHHHHH-hCCEEEEecCCcCCCCCEE-EEeCCHHHHHh
Confidence 999999995 69999999 56765 57788776654
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=7e-25 Score=204.09 Aligned_cols=206 Identities=22% Similarity=0.319 Sum_probs=153.2
Q ss_pred ccEEEEeEEEEeC----CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC----CceEEEEcCCC-------
Q 008750 96 SGVKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP----DSGNVIKAKSN------- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~----~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p----~~G~I~~~g~~------- 160 (555)
+.+.+.|++..+. -..++++||+++.+||+-||||++|||||-..|.|+|..+- +.-...+++.+
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 4578899999883 34699999999999999999999999999999999998753 22333343322
Q ss_pred -------ceEEEEecccc--cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 -------MKIAFLSQEFE--VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 -------~~ig~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..|++++|+|. +.++.+|-.-+.... ....+-+ ++.+..+
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~I---------------------P~wTfkg----------rWWq~F~ 130 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNI---------------------PAWTYKG----------RWWQRFG 130 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhC---------------------ccccccc----------hHhhhhc
Confidence 24788888874 333333322211100 0000000 0111111
Q ss_pred cccHHHHHHHHhhhcCCCc--cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CC
Q 008750 232 LDTLDAKVSKLMPELGFTA--DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQ 305 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~--~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~ 305 (555)
....++.++|.++|+.+ +....+|.+|--||-|+|.||.|++.+|.+||.|||||++|+.+...+.++|. ..
T Consensus 131 --WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~ 208 (330)
T COG4170 131 --WRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNS 208 (330)
T ss_pred --hhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccC
Confidence 12457788999999973 34567899999999999999999999999999999999999999988888774 46
Q ss_pred CceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 306 DVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 306 ~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
+.||+++|||+..+.++||+|-||--|..
T Consensus 209 ~TtILL~s~Dl~~is~W~d~i~VlYCGQ~ 237 (330)
T COG4170 209 NTTILLISHDLQMISQWADKINVLYCGQT 237 (330)
T ss_pred CceEEEEcccHHHHHHHhhheEEEEeccc
Confidence 89999999999999999999999977753
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.5e-25 Score=218.48 Aligned_cols=77 Identities=18% Similarity=0.284 Sum_probs=68.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhccC----CCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQD----PDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~----p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
++++.+||||||||++||++++.+ |+++||||||++||+....++.+.+.+ .|.|+|+||||.+++ .+||++
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~-~~~d~i 228 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFF-SKADAL 228 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHH-hhCCeE
Confidence 455689999999999999999864 999999999999999999998887754 378999999998887 579999
Q ss_pred EEecC
Q 008750 327 VETEM 331 (555)
Q Consensus 327 ~~l~~ 331 (555)
++|..
T Consensus 229 ~~~~~ 233 (247)
T cd03275 229 VGVYR 233 (247)
T ss_pred EEEEe
Confidence 99864
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-24 Score=215.99 Aligned_cols=132 Identities=30% Similarity=0.433 Sum_probs=113.3
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEec
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q 495 (555)
.++.|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++|++|
T Consensus 9 ~~~~l~i~~l~~~~~~~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~i~~v~q 88 (257)
T PRK11247 9 QGTPLLLNAVSKRYGERTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAEAREDTRLMFQ 88 (257)
T ss_pred CCCcEEEEEEEEEECCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHHhhCceEEEec
Confidence 35679999999999888899999999999999999999999999999999999999999999987543 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..||.+++...........+..+|..+++. +..++++..|||||||||+||
T Consensus 89 ~~--~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqrl~la 145 (257)
T PRK11247 89 DA--RLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLA-DRANEWPAALSGGQKQRVALA 145 (257)
T ss_pred Cc--cCCCCCcHHHHHHhcccchHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 85 3656789999997543222235678899999995 467899999999999999986
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-23 Score=220.79 Aligned_cols=209 Identities=19% Similarity=0.329 Sum_probs=154.4
Q ss_pred CCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--ceEEEEec
Q 008750 93 SISSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--MKIAFLSQ 168 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--~~ig~v~Q 168 (555)
+.+..|++++|++.-+. ..+++|+||+|..|+.+.|.||||||||+|+|+|+|+-+..+|++...... ..+-||||
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~~~lfflPQ 508 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGPKDLFFLPQ 508 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCCCceEEecC
Confidence 44578999999998865 457889999999999999999999999999999999999999999865433 56899999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc-C
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-G 247 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-g 247 (555)
.|++ ...|+++-+..+...... ......| +.+.++++.. +...+++.. |
T Consensus 509 rPYm-t~GTLRdQvIYP~~~~~~-----------~~~~~~d-~~i~r~Le~v-----------------~L~hl~~r~gg 558 (659)
T KOG0060|consen 509 RPYM-TLGTLRDQVIYPLKAEDM-----------DSKSASD-EDILRILENV-----------------QLGHLLEREGG 558 (659)
T ss_pred CCCc-cccchhheeeccCccccc-----------cccCCCH-HHHHHHHHHh-----------------hhhhHHHHhCC
Confidence 9987 455999876544221100 0011111 1111111110 111112221 2
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeE
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
++......=...||+||+||+++||.+..+|++-||||.||++|.+.+..+.+.+++.|.|.|-|+|+.++.. +-|.++
T Consensus 559 ld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~giT~iSVgHRkSL~k-fHd~~L 637 (659)
T KOG0060|consen 559 LDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREMGITFISVGHRKSLWK-FHDYVL 637 (659)
T ss_pred CCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHcCCeEEEeccHHHHHh-hhhEEE
Confidence 2110001112479999999999999999999999999999999999999999999999999999999999885 678888
Q ss_pred EecCC
Q 008750 328 ETEMG 332 (555)
Q Consensus 328 ~l~~G 332 (555)
.|+.+
T Consensus 638 ~~~g~ 642 (659)
T KOG0060|consen 638 RMDGR 642 (659)
T ss_pred EecCC
Confidence 88764
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-24 Score=206.82 Aligned_cols=130 Identities=32% Similarity=0.412 Sum_probs=112.4
Q ss_pred ceEEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 423 SVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
..|+++|+++.| +++.++++|||+|.+||+|+|+|++|||||||||+|.|+..|++|+|.+++..+
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~ 81 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHH
Confidence 468999999999 567899999999999999999999999999999999999999999999998544
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc--------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
.+||++|++ .|-+..||++|+....- ......+...|.++|+. +.+.++...|||||+|||+|
T Consensus 82 ~iGmIfQ~~--nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~-~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 82 DIGMIFQQF--NLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGIL-DKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred hceeEeccC--CcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcH-HHHHHHhccCCcchhHHHHH
Confidence 368999985 57799999999975421 11223577889999995 67899999999999999998
Q ss_pred C
Q 008750 555 V 555 (555)
Q Consensus 555 a 555 (555)
|
T Consensus 159 A 159 (258)
T COG3638 159 A 159 (258)
T ss_pred H
Confidence 6
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-25 Score=216.05 Aligned_cols=128 Identities=30% Similarity=0.449 Sum_probs=112.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee--------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV--------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~---~~--------~~~y~ 493 (555)
|+++++++.|+...+++++||+|+.||.+|+.||||||||||||+|+|++.|++|.|.+++. +. ++||+
T Consensus 3 i~i~~~~~~~~~~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfv 82 (345)
T COG1118 3 IRINNVKKRFGAFGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFV 82 (345)
T ss_pred eeehhhhhhcccccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEE
Confidence 67889999999888999999999999999999999999999999999999999999999987 33 47999
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc------c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE------D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~------~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|+. .+++..||.+|++...+ . .....+.++|..+.+. ...+++|..|||||||||+||
T Consensus 83 FQ~Y--ALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~-~la~ryP~QLSGGQrQRVALA 149 (345)
T COG1118 83 FQHY--ALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLE-GLADRYPAQLSGGQRQRVALA 149 (345)
T ss_pred Eech--hhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhccc-chhhcCchhcChHHHHHHHHH
Confidence 9985 48899999999987652 1 1224577789999985 478999999999999999986
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-25 Score=201.69 Aligned_cols=128 Identities=31% Similarity=0.430 Sum_probs=111.6
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
|+++||++.|++ +++|+++||+|.+||.+-|+||+|+|||||||+|++.++|++|.|++++.++ .+
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 789999999975 4599999999999999999999999999999999999999999999998876 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+++|+. -|-+++||+||++.+.. .. ....+...|...|+. +....-|..|||||||||+||
T Consensus 82 GvVFQD~--rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~-~k~~~lP~~LSGGEQQRvaIA 149 (223)
T COG2884 82 GVVFQDF--RLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLK-HKARALPSQLSGGEQQRVAIA 149 (223)
T ss_pred eeEeeec--cccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccc-hhhhcCccccCchHHHHHHHH
Confidence 8999985 46689999999987643 12 234577899999996 467888999999999999987
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.2e-24 Score=209.61 Aligned_cols=128 Identities=26% Similarity=0.415 Sum_probs=108.7
Q ss_pred EEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------e
Q 008750 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------L 489 (555)
Q Consensus 425 l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~ 489 (555)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 789999999964 4699999999999999999999999999999999999999999999988644 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .+.+..||.+++..... . .....+..++..+++. +..++++..|||||||||+||
T Consensus 82 i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 150 (216)
T TIGR00960 82 IGMVFQDH--RLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLE-GKAHALPMQLSGGEQQRVAIA 150 (216)
T ss_pred ceEEecCc--cccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 68999985 46677899999975421 1 1234578899999995 567899999999999999986
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-24 Score=209.81 Aligned_cols=128 Identities=34% Similarity=0.497 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 80 (213)
T cd03259 1 LELKGLSKTYGSVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPERRNIGMVFQD 80 (213)
T ss_pred CeeeeeEEEeCCeeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCchhhccEEEEcCc
Confidence 4689999999888899999999999999999999999999999999999999999999987654 36899998
Q ss_pred CccCCCCCCCHHHHHHhhccc--C----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAED--W----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~--~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..|+.+++...... . ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la 142 (213)
T cd03259 81 Y--ALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLE-GLLNRYPHELSGGQQQRVALA 142 (213)
T ss_pred h--hhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHH
Confidence 5 366778999999754221 1 123577899999996 567899999999999999986
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.5e-24 Score=211.27 Aligned_cols=128 Identities=34% Similarity=0.460 Sum_probs=108.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------eeE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LPN 491 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~~ 491 (555)
|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~ 80 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMG 80 (235)
T ss_pred CeEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceE
Confidence 4789999999887899999999999999999999999999999999999999999999987543 267
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc---cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+.+..||.+++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 81 ~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~ia 148 (235)
T cd03261 81 MLFQSG--ALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLR-GAEDLYPAELSGGMKKRVALA 148 (235)
T ss_pred EEccCc--ccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 999985 46677899999975421 111 23467789999995 467899999999999999986
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-24 Score=210.01 Aligned_cols=128 Identities=28% Similarity=0.396 Sum_probs=109.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVRRRIGIVFQ 80 (220)
T ss_pred CEEEEEEEEECCEEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcChHHHhhcEEEecC
Confidence 4789999999888899999999999999999999999999999999999999999999987543 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..||.+++..... .. ....+..+|..+++. +..++++..|||||||||+||
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la 143 (220)
T cd03265 81 DL--SVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLL-EAADRLVKTYSGGMRRRLEIA 143 (220)
T ss_pred Cc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhCCHHHHHHHHHH
Confidence 85 36677899999965321 11 123578899999995 567899999999999999986
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-24 Score=223.69 Aligned_cols=129 Identities=28% Similarity=0.431 Sum_probs=112.9
Q ss_pred eEEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEe
Q 008750 424 VVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFE 494 (555)
Q Consensus 424 ~l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~ 494 (555)
.|+++|+++.| ++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~ 82 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPADRDIAMVF 82 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEe
Confidence 48899999999 677899999999999999999999999999999999999999999999998755 378999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ .+++..||.+|+..... ... ...+..+|..+++. +.++++|..|||||||||+||
T Consensus 83 Q~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~QRvalA 146 (356)
T PRK11650 83 QNY--ALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELE-PLLDRKPRELSGGQRQRVAMG 146 (356)
T ss_pred CCc--cccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHH
Confidence 985 57889999999986532 111 24577899999995 578999999999999999986
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-24 Score=222.17 Aligned_cols=129 Identities=26% Similarity=0.422 Sum_probs=113.5
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 4 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~r~ig~v~Q 83 (353)
T TIGR03265 4 YLSIDNIRKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQKRDYGIVFQ 83 (353)
T ss_pred EEEEEEEEEEeCCeEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEEeC
Confidence 58999999999987899999999999999999999999999999999999999999999998655 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+...... .....+..++..+++. +.+++++..|||||||||+||
T Consensus 84 ~~--~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~-~~~~~~~~~LSgGq~QRvaLA 146 (353)
T TIGR03265 84 SY--ALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLP-GSERKYPGQLSGGQQQRVALA 146 (353)
T ss_pred Cc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhCChhhCCHHHHHHHHHH
Confidence 85 577899999999865321 1234678899999996 578999999999999999986
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.1e-24 Score=222.19 Aligned_cols=131 Identities=30% Similarity=0.489 Sum_probs=114.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
...|+++|+++.|++..+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 4 ~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 83 (351)
T PRK11432 4 KNFVVLKNITKRFGSNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQQRDICMV 83 (351)
T ss_pred CcEEEEEeEEEEECCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 3479999999999888899999999999999999999999999999999999999999999998654 36899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.+|+..... . .....+..++..+++. +..++++..|||||||||+||
T Consensus 84 fQ~~--~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~-~~~~r~~~~LSgGq~QRVaLA 148 (351)
T PRK11432 84 FQSY--ALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLA-GFEDRYVDQISGGQQQRVALA 148 (351)
T ss_pred eCCc--ccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 9985 57889999999986532 1 1134678899999996 477999999999999999986
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-24 Score=212.43 Aligned_cols=128 Identities=31% Similarity=0.417 Sum_probs=112.1
Q ss_pred EEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
|+++++++.|.. ..+++++||+|++||+.+|+|.+|+|||||+|+|-++.+|++|.|.++|.++
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 789999999975 3689999999999999999999999999999999999999999999999665
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|+++|+. .|..++||.+|++...+ .+ ....+..+|...|++ |..++.|.+|||||||||+||
T Consensus 82 R~~IGMIFQhF--nLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~-dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 82 RQKIGMIFQHF--NLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLS-DKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred HhhccEEeccc--cccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCCh-hhhccCchhcCcchhhHHHHH
Confidence 378999985 46678999999987543 12 234578899999997 789999999999999999986
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-24 Score=207.68 Aligned_cols=128 Identities=27% Similarity=0.433 Sum_probs=108.2
Q ss_pred EEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeEEEecCC
Q 008750 426 TIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQ 497 (555)
Q Consensus 426 ~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~y~~Q~~ 497 (555)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~i~~~~q~~ 80 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKAKERRKSIGYVMQDV 80 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhhHHhhcceEEEecCh
Confidence 36799999987 7899999999999999999999999999999999999999999999998664 478999985
Q ss_pred ccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 498 AEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 498 ~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
...+ ...|+.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 138 (205)
T cd03226 81 DYQL-FTDSVREELLLGLKELDAGNEQAETVLKDLDLY-ALKERHPLSLSGGQKQRLAIA 138 (205)
T ss_pred hhhh-hhccHHHHHhhhhhhcCccHHHHHHHHHHcCCc-hhcCCCchhCCHHHHHHHHHH
Confidence 3223 35699999975432 12235688899999996 467899999999999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.1e-24 Score=205.92 Aligned_cols=128 Identities=26% Similarity=0.389 Sum_probs=110.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 80 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEALRRIGALIEA 80 (208)
T ss_pred CEEEEEEEEECCeEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccchHHHHhhEEEecCC
Confidence 4789999999888899999999999999999999999999999999999999999999998754 36799998
Q ss_pred CccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..||.+++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 81 ~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 138 (208)
T cd03268 81 P--GFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLK-DSAKKKVKGFSLGMKQRLGIA 138 (208)
T ss_pred C--ccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCH-HHHhhhHhhCCHHHHHHHHHH
Confidence 5 46678899999875432 22345678889999995 467899999999999999885
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=206.91 Aligned_cols=128 Identities=23% Similarity=0.455 Sum_probs=109.3
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------eeEEEecCCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQA 498 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------~~~y~~Q~~~ 498 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 1 l~~~~l~~~~~~~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~i~~~~q~~- 79 (210)
T cd03269 1 LEVENVTKRFGRVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEER- 79 (210)
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhHHHHccEEEeccCC-
Confidence 4789999999887899999999999999999999999999999999999999999999998654 378999985
Q ss_pred cCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 499 EALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 499 ~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 80 -~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 140 (210)
T cd03269 80 -GLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELS-EYANKRVEELSKGNQQKVQFI 140 (210)
T ss_pred -cCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCh-HHHhCcHhhCCHHHHHHHHHH
Confidence 46677899999875421 11 134577889999996 567899999999999999885
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-24 Score=207.68 Aligned_cols=128 Identities=34% Similarity=0.494 Sum_probs=109.0
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEec
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q 495 (555)
|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~i~~v~q 80 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPGPDRGYVFQ 80 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccccCcEEEEec
Confidence 468999999987 6799999999999999999999999999999999999999999999988654 4689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrl~la 143 (220)
T cd03293 81 QD--ALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLS-GFENAYPHQLSGGMRQRVALA 143 (220)
T ss_pred cc--ccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCCcccCCHHHHHHHHHH
Confidence 85 36667899999875421 11 124578899999995 567899999999999999986
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.7e-24 Score=207.56 Aligned_cols=128 Identities=34% Similarity=0.490 Sum_probs=108.0
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 468999999976 6799999999999999999999999999999999999999999999987532
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 81 ~~~i~~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 152 (218)
T cd03255 81 RRHIGFVFQSF--NLLPDLTALENVELPLLLAGVPKKERRERAEELLERVGLG-DRLNHYPSELSGGQQQRVAIA 152 (218)
T ss_pred hhcEEEEeecc--ccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhcChhhcCHHHHHHHHHH
Confidence 368999985 36677899999876422 11 123577899999996 467899999999999999986
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-23 Score=234.24 Aligned_cols=104 Identities=24% Similarity=0.319 Sum_probs=88.8
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhcc---CCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ---DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~---~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi 311 (555)
+..++|..+||.....++++.+|||||+||+.||++|+. +|+++||||||++||+..+..|.++|+ +.|.|||+
T Consensus 807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 445788899996445688999999999999999999997 599999999999999999999888775 35899999
Q ss_pred EecCHHHHHhhcceeEEe------cCCeEeeccCChHH
Q 008750 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQ 343 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~ 343 (555)
|||+++++. .||+|++| ++|++ ++.|..++
T Consensus 887 i~H~~~~i~-~aD~ii~Lgp~~G~~gG~i-v~~G~~~~ 922 (924)
T TIGR00630 887 IEHNLDVIK-TADYIIDLGPEGGDGGGTI-VASGTPEE 922 (924)
T ss_pred EeCCHHHHH-hCCEEEEecCCccCCCCEE-EEeCCHHH
Confidence 999999995 69999999 57776 46676543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-24 Score=208.40 Aligned_cols=129 Identities=29% Similarity=0.457 Sum_probs=107.3
Q ss_pred EEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecCCccC
Q 008750 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAEA 500 (555)
Q Consensus 426 ~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~~~~~ 500 (555)
+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++...
T Consensus 1 ~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~i~~v~q~~~~~ 80 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLEKERKRIGYVPQRRSID 80 (213)
T ss_pred CcccceeEECCEEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHHHHHhheEEeccccccc
Confidence 367899999877899999999999999999999999999999999999999999999998643 478999986321
Q ss_pred CCCCCCHHHHHHhhccc----------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 501 LDLDKTVLETVAEAAED----------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 501 l~~~~tv~e~l~~~~~~----------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.....||.+++...... .....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 144 (213)
T cd03235 81 RDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLS-ELADRQIGELSGGQQQRVLLA 144 (213)
T ss_pred cCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCH-HHHhCCcccCCHHHHHHHHHH
Confidence 22447999999754321 1124578899999995 578899999999999999986
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.1e-24 Score=206.24 Aligned_cols=128 Identities=30% Similarity=0.486 Sum_probs=108.7
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 i~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~~~~i~~~~q~ 80 (213)
T cd03301 1 VELENVTKRFGNVTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPKDRDIAMVFQN 80 (213)
T ss_pred CEEEeeEEEECCeeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcccceEEEEecC
Confidence 4789999999888899999999999999999999999999999999999999999999987654 36899998
Q ss_pred CccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qr~~la 142 (213)
T cd03301 81 Y--ALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-HLLDRKPKQLSGGQRQRVALG 142 (213)
T ss_pred h--hhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-HHHhCChhhCCHHHHHHHHHH
Confidence 5 36677899999975421 11 123567889999995 567999999999999999886
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=220.79 Aligned_cols=131 Identities=28% Similarity=0.491 Sum_probs=114.4
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
.+.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 12 ~~~L~l~~l~~~~~~~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v 91 (375)
T PRK09452 12 SPLVELRGISKSFDGKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAENRHVNTV 91 (375)
T ss_pred CceEEEEEEEEEECCeEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 4579999999999887899999999999999999999999999999999999999999999998765 27899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.+|+..... ... ...+..++..+++. +..+++|..|||||||||+||
T Consensus 92 fQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~p~~LSgGq~QRVaLA 156 (375)
T PRK09452 92 FQSY--ALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLE-EFAQRKPHQLSGGQQQRVAIA 156 (375)
T ss_pred ecCc--ccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 9985 58899999999986532 111 23577889999996 578999999999999999986
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-23 Score=207.77 Aligned_cols=130 Identities=28% Similarity=0.402 Sum_probs=109.7
Q ss_pred ceEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
+.++++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 83 (233)
T PRK11629 4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83 (233)
T ss_pred ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHH
Confidence 46899999999974 4699999999999999999999999999999999999999999999988543
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++..... . .....+..++..+++. +..++++..|||||||||+||
T Consensus 84 ~~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgG~~qrl~la 157 (233)
T PRK11629 84 LRNQKLGFIYQFH--HLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLE-HRANHRPSELSGGERQRVAIA 157 (233)
T ss_pred HHhccEEEEecCc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 46677899999875321 1 1123577899999996 567899999999999999986
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-24 Score=211.49 Aligned_cols=128 Identities=29% Similarity=0.429 Sum_probs=109.6
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecCCcc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQAE 499 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~~~~ 499 (555)
|+++|+++.|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|++
T Consensus 2 l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~v~q~~-- 79 (255)
T PRK11248 2 LQISHLYADYGGKPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAERGVVFQNE-- 79 (255)
T ss_pred EEEEEEEEEeCCeeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCCcEEEEeCCC--
Confidence 6899999999887899999999999999999999999999999999999999999999987654 368999985
Q ss_pred CCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 500 ALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 500 ~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+..||.+++..... .. ....+..+|..+++. +..++++..|||||||||+||
T Consensus 80 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrl~la 140 (255)
T PRK11248 80 GLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLE-GAEKRYIWQLSGGQRQRVGIA 140 (255)
T ss_pred ccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhhCChhhCCHHHHHHHHHH
Confidence 46677899999975321 11 123578899999996 467899999999999999986
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-24 Score=205.86 Aligned_cols=128 Identities=29% Similarity=0.380 Sum_probs=108.6
Q ss_pred EEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 68999999994 56799999999999999999999999999999999999999999999987543 25
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..|+.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 149 (214)
T TIGR02673 82 GVVFQDF--RLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLE-HKADAFPEQLSGGEQQRVAIA 149 (214)
T ss_pred EEEecCh--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 7999985 36677899999876421 11234578899999996 467899999999999999986
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=202.89 Aligned_cols=128 Identities=29% Similarity=0.465 Sum_probs=110.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.+++.++ .++|++|
T Consensus 1 l~i~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (201)
T cd03231 1 LEADELTCERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYLGH 80 (201)
T ss_pred CEEEEEEEEeCCceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccccHHhhhheEEecc
Confidence 4789999999888899999999999999999999999999999999999999999999987654 3678998
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++...........+..++..+++. +..++++..||||||||++||
T Consensus 81 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 137 (201)
T cd03231 81 AP--GIKTTLSVLENLRFWHADHSDEQVEEALARVGLN-GFEDRPVAQLSAGQQRRVALA 137 (201)
T ss_pred cc--ccCCCcCHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCchhhCCHHHHHHHHHH
Confidence 75 4667789999997654333455678899999996 457889999999999999986
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.9e-24 Score=218.62 Aligned_cols=134 Identities=22% Similarity=0.381 Sum_probs=114.4
Q ss_pred CceEEEEeeeEEcCC-------------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 422 RSVVTIKNLEFGYED-------------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~-------------~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
+++|+++|+++.|+. ..+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i 85 (331)
T PRK15079 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDL 85 (331)
T ss_pred CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEEC
Confidence 578999999999962 3589999999999999999999999999999999999999999999988654
Q ss_pred -------------eeEEEecCCccCCCCCCCHHHHHHhhcc----cCc----HHHHHHHHhhCCCChhhhccccCCCChh
Q 008750 489 -------------LPNYFEQNQAEALDLDKTVLETVAEAAE----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (555)
Q Consensus 489 -------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGG 547 (555)
.++|++|++...+++..||.+++..... ... ...+..+|..+++..+.++++++.||||
T Consensus 86 ~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG 165 (331)
T PRK15079 86 LGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGG 165 (331)
T ss_pred CcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHH
Confidence 3689999975568888999999875321 122 2346788999999766789999999999
Q ss_pred HHhchhcC
Q 008750 548 EKVNQTLV 555 (555)
Q Consensus 548 ek~Rv~La 555 (555)
|+|||+||
T Consensus 166 ~~QRv~iA 173 (331)
T PRK15079 166 QCQRIGIA 173 (331)
T ss_pred HHHHHHHH
Confidence 99999986
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=211.71 Aligned_cols=131 Identities=31% Similarity=0.446 Sum_probs=110.7
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
..+|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 5 ANLVDMRGVSFTRGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred cceEEEeCeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 3579999999999888899999999999999999999999999999999999999999999987543
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc---cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE---DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+.+..||.+++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 85 ~i~~v~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGq~qrv~la 155 (269)
T PRK11831 85 RMSMLFQSG--ALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLR-GAAKLMPSELSGGMARRAALA 155 (269)
T ss_pred cEEEEeccc--ccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 267999985 46677899999875321 111 13466789999996 567899999999999999986
|
|
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=203.93 Aligned_cols=133 Identities=22% Similarity=0.342 Sum_probs=112.8
Q ss_pred CCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------eEE
Q 008750 420 SGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------PNY 492 (555)
Q Consensus 420 ~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-------~~y 492 (555)
.++++++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++. ++|
T Consensus 7 ~~~~~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~~~~~~i~~ 86 (214)
T PRK13543 7 TAPPLLAAHALAFSRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMAY 86 (214)
T ss_pred CCcceEEEeeEEEecCCceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccchhhhhceEE
Confidence 3557899999999998878999999999999999999999999999999999999999999999986542 679
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cC-cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~-~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 87 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 149 (214)
T PRK13543 87 LGHLP--GLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLA-GYEDTLVRQLSAGQKKRLALA 149 (214)
T ss_pred eecCc--ccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHcCCh-hhccCChhhCCHHHHHHHHHH
Confidence 99874 46667799999865422 11 234567889999996 467999999999999999985
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=202.98 Aligned_cols=128 Identities=27% Similarity=0.437 Sum_probs=110.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~~~~~~~~~~~~~ 81 (204)
T PRK13538 2 LEARNLACERDERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQDLLYLGH 81 (204)
T ss_pred eEEEEEEEEECCEEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccchHHhhhheEEeCC
Confidence 7899999999888899999999999999999999999999999999999999999999988654 2578888
Q ss_pred CCccCCCCCCCHHHHHHhhccc---CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++...... .....+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la 141 (204)
T PRK13538 82 QP--GIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA-GFEDVPVRQLSAGQQRRVALA 141 (204)
T ss_pred cc--ccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHH
Confidence 74 466778999999754321 2345678899999995 467899999999999999986
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=205.08 Aligned_cols=128 Identities=25% Similarity=0.402 Sum_probs=109.4
Q ss_pred EEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeE
Q 008750 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPN 491 (555)
Q Consensus 425 l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~ 491 (555)
++++|+++.|++. .+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~ 81 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARRRLG 81 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCHHHHHhhEE
Confidence 6899999999875 799999999999999999999999999999999999999999999987654 367
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 82 ~~~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 82 FVSDST--GLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGME-ELLDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EecCCc--ccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhhhhhhcCHHHHHHHHHH
Confidence 999986 46677899999865321 11 124577899999995 578999999999999999986
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=205.74 Aligned_cols=129 Identities=31% Similarity=0.470 Sum_probs=108.3
Q ss_pred eEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 424 VVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
+|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 4789999999964 4699999999999999999999999999999999999999999999987543
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~i~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 153 (221)
T TIGR02211 81 RNKKLGFIYQFH--HLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLE-HRINHRPSELSGGERQRVAIA 153 (221)
T ss_pred HHhcEEEEeccc--ccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 46667899999875321 11 123577899999996 467899999999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=208.05 Aligned_cols=129 Identities=31% Similarity=0.490 Sum_probs=109.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~l~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~i~~v~q 81 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQERNVGFVFQ 81 (239)
T ss_pred EEEEEeEEEEECCEEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCccccceEEEec
Confidence 37899999999888899999999999999999999999999999999999999999999987543 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----c----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----R----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..||.+++..... .. . ...+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 148 (239)
T cd03296 82 HY--ALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLD-WLADRYPAQLSGGQRQRVALA 148 (239)
T ss_pred CC--cccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCCh-hhhhcChhhCCHHHHHHHHHH
Confidence 85 36667899999975421 10 1 23467889999995 567899999999999999986
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=220.41 Aligned_cols=129 Identities=31% Similarity=0.489 Sum_probs=111.8
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|+++.+|+++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~i~~l~~~~~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~i~~v~Q 82 (369)
T PRK11000 3 SVTLRNVTKAYGDVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPAERGVGMVFQ 82 (369)
T ss_pred EEEEEEEEEEeCCeEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHhHCCEEEEeC
Confidence 48899999999888899999999999999999999999999999999999999999999988654 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 83 ~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~-~~~~~~~~~LSgGq~QRvaLA 145 (369)
T PRK11000 83 SY--ALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIG 145 (369)
T ss_pred Cc--ccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 85 47788999999975432 111 23577899999995 578999999999999999986
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=205.72 Aligned_cols=132 Identities=25% Similarity=0.432 Sum_probs=108.0
Q ss_pred eEEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
+|+++|+++.|+++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIR 80 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHh
Confidence 37899999999765 799999999999999999999999999999999999999999999987543
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc----cCcH---HH-HHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE----DWRI---DD-IKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~---~~-~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..||.+++..... .... .. +..++..+++.....++++..|||||||||+||
T Consensus 81 ~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 157 (228)
T cd03257 81 RKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIA 157 (228)
T ss_pred hccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHH
Confidence 3679999863346677899999864321 1111 12 247889999865578899999999999999986
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=213.99 Aligned_cols=131 Identities=30% Similarity=0.434 Sum_probs=110.7
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y 492 (555)
+..|+++|+++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~~~i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~i~~ 81 (303)
T TIGR01288 2 NVAIDLVGVSKSYGDKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRARLARVAIGV 81 (303)
T ss_pred CcEEEEEeEEEEeCCeEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccHHHHhhcEEE
Confidence 3568999999999888899999999999999999999999999999999999999999999987643 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+.+..||.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 82 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~-~~~~~~~~~LSgG~~qrv~la 147 (303)
T TIGR01288 82 VPQFD--NLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADVRVALLSGGMKRRLTLA 147 (303)
T ss_pred Eeccc--cCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hHhcCchhhCCHHHHHHHHHH
Confidence 99985 46678899999974321 111 12456788999985 567899999999999999986
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-23 Score=207.66 Aligned_cols=128 Identities=29% Similarity=0.431 Sum_probs=108.3
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~ 493 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v 80 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRT 80 (236)
T ss_pred CeeeeeEEEECCEEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEE
Confidence 4689999999887899999999999999999999999999999999999999999999987543 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcccC----------------cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAEDW----------------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~~----------------~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.+++....... ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 81 FQIP--RLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLA-DLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred eccc--ccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCcc-chhhCChhhCCHHHHHHHHHH
Confidence 9985 4667789999987542110 123467889999996 467899999999999999986
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-23 Score=198.91 Aligned_cols=162 Identities=18% Similarity=0.132 Sum_probs=114.8
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc-----eE----EEEcC-CCceEEEEecccccCcCccHHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-----GN----VIKAK-SNMKIAFLSQEFEVSMSRTVREE 181 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-----G~----I~~~g-~~~~ig~v~Q~~~~~~~~tv~e~ 181 (555)
.++++++++.+| +.+|+|+||||||||+..|.-...... |. +...| ....|.+.+++..+.. |
T Consensus 11 ~~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~ 83 (198)
T cd03276 11 CHRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKASDTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N 83 (198)
T ss_pred ceeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcccccccccHHHHhhCCCCeEEEEEEEEcCCccC------C
Confidence 356778888887 889999999999999999985433221 21 01111 1235677777654432 1
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCC
Q 008750 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261 (555)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LS 261 (555)
- .. ......+.++++. ....++++.+||
T Consensus 84 ~--~~----------------------------------------------~~~~~~~~~~l~~----~~~~~~~~~~lS 111 (198)
T cd03276 84 P--LC----------------------------------------------VLSQDMARSFLTS----NKAAVRDVKTLS 111 (198)
T ss_pred c--CC----------------------------------------------HHHHHHHHHHhcc----ccccCCcccccC
Confidence 0 00 0001223334444 234578899999
Q ss_pred hHHHHHHHHHHHh----ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC------CCceEEEEecCHHHHHhhcceeEEecC
Q 008750 262 SGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 262 GGqrqRv~lAraL----~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~------~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
+|||||++||+|| +.+|+++||||||++||+.....+.++|.+ .+.|||++||+++.+..+ |+|.++..
T Consensus 112 ~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~ 190 (198)
T cd03276 112 GGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRM 190 (198)
T ss_pred hhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEe
Confidence 9999999999999 699999999999999999998888887643 135899999999999875 99999986
Q ss_pred Ce
Q 008750 332 GV 333 (555)
Q Consensus 332 G~ 333 (555)
++
T Consensus 191 ~~ 192 (198)
T cd03276 191 KD 192 (198)
T ss_pred cC
Confidence 54
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-23 Score=206.43 Aligned_cols=128 Identities=30% Similarity=0.480 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~~~~i~~~~q 81 (236)
T TIGR03864 2 LEVAGLSFAYGARRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAALARLGVVFQ 81 (236)
T ss_pred EEEEeeEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhhhhhEEEeCC
Confidence 7899999999888899999999999999999999999999999999999999999999987654 3679999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+.+..|+.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 82 ~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrl~la 144 (236)
T TIGR03864 82 QP--TLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARLGLA-ERADDKVRELNGGHRRRVEIA 144 (236)
T ss_pred CC--CCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 85 35577899999875421 11 123577889999996 567899999999999999986
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=216.54 Aligned_cols=134 Identities=25% Similarity=0.440 Sum_probs=114.8
Q ss_pred CceEEEEeeeEEcCC----------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008750 422 RSVVTIKNLEFGYED----------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~----------~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--- 488 (555)
+++|+++|+++.|+. ..++++|||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 457999999999962 3689999999999999999999999999999999999999999999998654
Q ss_pred ----------eeEEEecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhc
Q 008750 489 ----------LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVN 551 (555)
Q Consensus 489 ----------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~R 551 (555)
.++|++|++...+++..++.+++..... .. ....+..+|..+++..+.++++++.||||||||
T Consensus 83 ~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 83 DPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred CHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHH
Confidence 3689999986678899999998864321 11 124578899999997667899999999999999
Q ss_pred hhcC
Q 008750 552 QTLV 555 (555)
Q Consensus 552 v~La 555 (555)
|+||
T Consensus 163 v~iA 166 (327)
T PRK11308 163 IAIA 166 (327)
T ss_pred HHHH
Confidence 9986
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=219.50 Aligned_cols=131 Identities=30% Similarity=0.512 Sum_probs=114.5
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYF 493 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~ 493 (555)
...|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|+
T Consensus 17 ~~~l~l~~v~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v 96 (377)
T PRK11607 17 TPLLEIRNLTKSFDGQHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPPYQRPINMM 96 (377)
T ss_pred CceEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHCCEEEE
Confidence 5679999999999887899999999999999999999999999999999999999999999998755 37899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.||+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 97 fQ~~--~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~-~~~~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 97 FQSY--ALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQ-EFAKRKPHQLSGGQRQRVALA 161 (377)
T ss_pred eCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 9985 48899999999986532 111 23577889999995 578999999999999999986
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-23 Score=199.93 Aligned_cols=131 Identities=28% Similarity=0.446 Sum_probs=110.9
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------eE
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PN 491 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-----------~~ 491 (555)
+.++++|++..|+...++++|||++.+||+++|+|+||+|||||||+|+|+.+|.+|+|.|+|.++. ++
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred CceeEEeEeecccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4689999999999989999999999999999999999999999999999999999999999998773 57
Q ss_pred EEecCCccCCCCCCCHHHHHHhhccc-----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~-----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+||-. .++++.||.||+...... ....++...+..|---.+..+++...|||||||.|++|
T Consensus 82 ~VPegR--~iF~~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAia 148 (237)
T COG0410 82 YVPEGR--RIFPRLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIA 148 (237)
T ss_pred eCcccc--cchhhCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHH
Confidence 999973 588999999999865321 11112445666665446788999999999999999875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=218.33 Aligned_cols=129 Identities=29% Similarity=0.439 Sum_probs=112.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~L~i~~l~~~~~~~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~~~r~i~~v~Q 81 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHARDRKVGFVFQ 81 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHCCEEEEec
Confidence 37899999999888899999999999999999999999999999999999999999999998755 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc------cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE------DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~------~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 82 ~~--~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalA 148 (353)
T PRK10851 82 HY--ALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLA-HLADRYPAQLSGGQKQRVALA 148 (353)
T ss_pred Cc--ccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 85 57788999999986532 111 23577899999995 578999999999999999986
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=200.78 Aligned_cols=128 Identities=27% Similarity=0.419 Sum_probs=108.8
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 80 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGH 80 (198)
T ss_pred CEEEEEEEEECCEEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccchHHhhhheEEecc
Confidence 4789999999888899999999999999999999999999999999999999999999988653 3578898
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+. .+++..|+.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 139 (198)
T TIGR01189 81 LP--GLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLT-GFEDLPAAQLSAGQQRRLALA 139 (198)
T ss_pred Cc--ccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCH-HHhcCChhhcCHHHHHHHHHH
Confidence 74 46677899999875432 11234578889999996 467899999999999999986
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=207.54 Aligned_cols=128 Identities=29% Similarity=0.421 Sum_probs=108.0
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999986 7899999999999999999999999999999999999999999999987543 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.+++..... ....+.+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 81 GMIFQQF--NLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLL-DKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred EEEcccC--cccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCCh-hhhCCCcccCCHHHHHHHHHH
Confidence 7999985 46677899999964321 11234577889999995 567899999999999999986
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=204.85 Aligned_cols=130 Identities=30% Similarity=0.407 Sum_probs=109.6
Q ss_pred ceEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 423 SVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
+.|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 5 ~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 84 (228)
T PRK10584 5 NIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84 (228)
T ss_pred ceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHH
Confidence 57899999999975 2589999999999999999999999999999999999999999999987543
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhc--cc----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAA--ED----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~--~~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+.+..|+.+++.... .. .....+..+|..+++. +..++++..|||||||||+||
T Consensus 85 ~~~~~i~~~~q~~--~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 85 LRAKHVGFVFQSF--MLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLG-KRLDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHhheEEEEEccc--ccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhCChhhCCHHHHHHHHHH
Confidence 368999985 4667789999987532 11 1134678899999996 567899999999999999986
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.7e-23 Score=204.47 Aligned_cols=131 Identities=27% Similarity=0.437 Sum_probs=110.1
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~ 491 (555)
+++|+++|+++.|+++.+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred CceEEEeccEEeeCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 4579999999999888899999999999999999999999999999999999999999999998643 367
Q ss_pred EEecCCccCCCCCCCHHHHHHhhc---c-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAA---E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~---~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++ .|+.+++.... . ......+..+|..+++.....++++..|||||+|||+||
T Consensus 85 ~~~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 149 (225)
T PRK10247 85 YCAQTP--TLFG-DTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLI 149 (225)
T ss_pred EEeccc--cccc-ccHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHH
Confidence 999985 2444 59999986421 1 112345678999999965567899999999999999986
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-23 Score=203.75 Aligned_cols=128 Identities=31% Similarity=0.428 Sum_probs=108.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~y 492 (555)
++++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 l~~~~l~~~~~~~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 80 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGM 80 (213)
T ss_pred CEEEEEEEEECCeEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceE
Confidence 4689999999887899999999999999999999999999999999999999999999988654 2579
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+.+..|+.+++..... .. ....+..++..+++. ..+++++..|||||||||+||
T Consensus 81 ~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 81 VFQQF--NLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLA-DKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCH-hHhhhCccccCHHHHHHHHHH
Confidence 99985 36677899999875321 11 123567889999996 467999999999999999986
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-23 Score=208.14 Aligned_cols=128 Identities=31% Similarity=0.416 Sum_probs=108.4
Q ss_pred EEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|+ ++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 68999999998 67799999999999999999999999999999999999999999999987553 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+.+..||.+++..... ......+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~v~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 82 GMIFQHY--NLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA-DKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred EEEcCCC--cccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 8999985 36677899999964211 11123577889999995 567899999999999999986
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.4e-23 Score=216.15 Aligned_cols=128 Identities=27% Similarity=0.376 Sum_probs=109.6
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|++ ..+|+++||+|.+||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999952 3699999999999999999999999999999999999999999999998654
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+.+..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 82 ~~Ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~-~~~~~~~~~LSgGqkQRV~IA 152 (343)
T TIGR02314 82 RQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLG-DKHDSYPSNLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEECCc--cccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 46678899999976432 122 23467889999995 578999999999999999986
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=212.38 Aligned_cols=131 Identities=31% Similarity=0.454 Sum_probs=112.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNY 492 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y 492 (555)
...++++|+++.|++..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 5 ~~~i~i~~l~k~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~~~~~~~ig~ 84 (306)
T PRK13537 5 VAPIDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRARHARQRVGV 84 (306)
T ss_pred CceEEEEeEEEEECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccchHHHHhcEEE
Confidence 3478999999999988899999999999999999999999999999999999999999999988654 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..||.|++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 85 v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 150 (306)
T PRK13537 85 VPQFD--NLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLE-NKADAKVGELSGGMKRRLTLA 150 (306)
T ss_pred EeccC--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCchhhCCHHHHHHHHHH
Confidence 99985 47778999999975332 111 23466788999995 567899999999999999986
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=212.86 Aligned_cols=131 Identities=21% Similarity=0.243 Sum_probs=108.6
Q ss_pred eEEEEeeeEEcCCc-----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYEDR-----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~-----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.|+++|+++.|++. .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 47899999999753 599999999999999999999999999999999999999999999975321
Q ss_pred ------------------------eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhc
Q 008750 489 ------------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLD 538 (555)
Q Consensus 489 ------------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~ 538 (555)
.++|++|++...++ ..||.+++..... ... ...+..++..+++..+..+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~-~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~ 160 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLF-EQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQ 160 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccc-cccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhh
Confidence 25899998643443 4699999975321 111 2457889999999766789
Q ss_pred cccCCCChhHHhchhcC
Q 008750 539 RKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 539 ~~~~~LSGGek~Rv~La 555 (555)
+++..|||||||||+||
T Consensus 161 ~~~~~LSgGqkqrvalA 177 (305)
T PRK13651 161 RSPFELSGGQKRRVALA 177 (305)
T ss_pred CChhhCCHHHHHHHHHH
Confidence 99999999999999986
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.4e-24 Score=240.93 Aligned_cols=208 Identities=24% Similarity=0.309 Sum_probs=162.3
Q ss_pred EEEEeEEEEe----CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCCCc-------eEE
Q 008750 98 VKLENISKSY----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNM-------KIA 164 (555)
Q Consensus 98 i~l~nls~~y----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~g~~~-------~ig 164 (555)
....|+.+.- +.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. -.+|.|.++|.+. .+|
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q~tF~R~~G 867 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQETFARVSG 867 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCchhhhccccc
Confidence 3445555444 23579999999999999999999999999999999999854 2578999998653 489
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||.|+..-.+..||+|-+.... .+ +....++..+..+.++++++
T Consensus 868 YvqQ~DiH~~~~TVrESL~fSA---------------~L---------------------Rlp~~v~~~ek~~yVe~Vi~ 911 (1391)
T KOG0065|consen 868 YVEQQDIHSPELTVRESLRFSA---------------AL---------------------RLPKEVSDEEKYEYVEEVIE 911 (1391)
T ss_pred eeecccccCcccchHHHHHHHH---------------HH---------------------cCCCcCCHHHHHHHHHHHHH
Confidence 9999876668899999764210 01 11112344445567888888
Q ss_pred hcCCCccccCCCCCC----CChHHHHHHHHHHHhccCC-CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCH
Q 008750 245 ELGFTADDGDRLVAS----FSSGWQMRMSLGKILLQDP-DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDR 316 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~----LSGGqrqRv~lAraL~~~p-~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~ 316 (555)
.++|+ ...+.-+.. ||..||+|+.||--|+.+| .||+|||||||||.++...+.+.++ +.|.|||.+=|.+
T Consensus 912 lleL~-~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQP 990 (1391)
T KOG0065|consen 912 LLELK-EYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQP 990 (1391)
T ss_pred HhCch-hhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 88886 344555555 9999999999999999999 8999999999999999888877765 4799999999998
Q ss_pred H-HHHhhcceeEEecCCeEeeccCChH
Q 008750 317 A-FLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 317 ~-~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
+ .+-+--|+++.|+.|.-.+|.|+..
T Consensus 991 S~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 991 SIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred cHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 5 3455689999999888778877543
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-23 Score=204.39 Aligned_cols=128 Identities=27% Similarity=0.394 Sum_probs=108.3
Q ss_pred EEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEE
Q 008750 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~ 493 (555)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~v 80 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDRKAARQSLGYC 80 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccchHHHhhhEEEe
Confidence 478999999986 6899999999999999999999999999999999999999999999988654 26899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..|+.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 145 (220)
T cd03263 81 PQFD--ALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-DKANKRARTLSGGMKRKLSLA 145 (220)
T ss_pred cCcC--CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHHhChhhhCCHHHHHHHHHH
Confidence 9985 46677899999875421 111 23567889999995 567899999999999999986
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=207.29 Aligned_cols=133 Identities=20% Similarity=0.282 Sum_probs=111.3
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~-----~--------- 488 (555)
.+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 5 ~~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 5 PLLSVRGLTKLYGPRKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred ceEEEeeeEEEcCCceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 46899999999988889999999999999999999999999999999999999999999998865 2
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhc---c--c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..|+.+++.... . . .....+..++..+++..+.+++++..|||||||||+||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~la 163 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIA 163 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHH
Confidence 268999987545667778888875421 1 1 11235677899999965568899999999999999986
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.1e-23 Score=190.27 Aligned_cols=193 Identities=24% Similarity=0.282 Sum_probs=148.7
Q ss_pred CccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 95 SSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
...|++.|+.|+|.. .|++-|+|++++.|.+..+||.||||||||||+|+|-.-.-.|.|.+.|... ..
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 345999999999964 5899999999999999999999999999999999998877779998877532 12
Q ss_pred EEEecc----------cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 164 AFLSQE----------FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 164 g~v~Q~----------~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
.|+--+ ..++...++..-+ ..++..
T Consensus 91 ~YLGgeW~~~~~~agevplq~D~sae~mi---------------------------------------------fgV~g~ 125 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVPLQGDISAEHMI---------------------------------------------FGVGGD 125 (291)
T ss_pred eEecccccccccccccccccccccHHHHH---------------------------------------------hhccCC
Confidence 333221 1111111111111 012222
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPM 309 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tv 309 (555)
.. .+-+.+++-++++-. =.++.+|-|||+||.||.-|+..=++|||||-|-.||+-++..|.+++++ .|.||
T Consensus 126 dp-~Rre~LI~iLDIdl~---WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatI 201 (291)
T KOG2355|consen 126 DP-ERREKLIDILDIDLR---WRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATI 201 (291)
T ss_pred Ch-hHhhhhhhheeccce---EEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEE
Confidence 22 444556666666422 23568999999999999999999999999999999999999999999863 69999
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEee
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~ 336 (555)
|..||-.+=++.+.++++.+..|++..
T Consensus 202 VYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 202 VYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred EEEeeeccchhhcchhEEEecCCeeee
Confidence 999999999999999999999999743
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=209.04 Aligned_cols=132 Identities=30% Similarity=0.417 Sum_probs=112.0
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
.++.|+++|+++.|+++.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 8 ~~~~l~i~~l~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 8 SDTTFALRNVSFRVPGRTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred CCceEEEeeEEEEECCEEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 45679999999999887899999999999999999999999999999999999999999999988654 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc----------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE----------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~----------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+.+..|+.+++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 88 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 88 AYLPQQL--PAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLK-PLAHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred EEeccCC--CCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCH-HHhcCCcccCCHHHHHHHHHH
Confidence 8999975 35567899999975321 01123577899999995 578999999999999999986
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-23 Score=203.63 Aligned_cols=128 Identities=27% Similarity=0.420 Sum_probs=108.1
Q ss_pred EEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
|+++|+++.| +++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 6899999999 567799999999999999999999999999999999999999999999987643 25
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+.+..|+.+++..... ... ...+..+|..+++. +.+++++..|||||||||+||
T Consensus 82 ~~~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 82 GMIFQDH--HLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLL-DKAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred EEEecCc--cccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCCchhCCHHHHHHHHHH
Confidence 7999985 35577899999975421 111 23467889999996 467899999999999999986
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-23 Score=212.41 Aligned_cols=130 Identities=27% Similarity=0.384 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
++++|+++.|++ ..+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 789999999974 4699999999999999999999999999999999999999999999998654
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++ ..||.+++..... ... ...+..+|..+++..+..++++..|||||||||+||
T Consensus 83 ~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lA 157 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIA 157 (290)
T ss_pred HHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHH
Confidence 26899998643454 4699999975422 111 235678899999975667899999999999999986
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-23 Score=198.94 Aligned_cols=128 Identities=27% Similarity=0.430 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~i~~~~q 81 (200)
T PRK13540 2 LDVIELDFDYHDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQLCFVGH 81 (200)
T ss_pred EEEEEEEEEeCCeeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccCHHHHHhheEEecc
Confidence 6899999999888899999999999999999999999999999999999999999999998654 2578898
Q ss_pred CCccCCCCCCCHHHHHHhhcc-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+++..... ......+..++..+++. +..++++..|||||+|||+||
T Consensus 82 ~~--~~~~~~tv~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~la 139 (200)
T PRK13540 82 RS--GINPYLTLRENCLYDIHFSPGAVGITELCRLFSLE-HLIDYPCGLLSSGQKRQVALL 139 (200)
T ss_pred cc--ccCcCCCHHHHHHHHHhcCcchHHHHHHHHHcCCc-hhhhCChhhcCHHHHHHHHHH
Confidence 74 46678899999875421 11234578899999985 467889999999999999986
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-23 Score=202.39 Aligned_cols=128 Identities=29% Similarity=0.360 Sum_probs=107.7
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------ee
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------------LP 490 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------------~~ 490 (555)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 468999999964 5799999999999999999999999999999999999999999999987643 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~~v~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 148 (214)
T cd03292 81 GVVFQDF--RLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLS-HKHRALPAELSGGEQQRVAIA 148 (214)
T ss_pred EEEecCc--hhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-HHhhCChhhcCHHHHHHHHHH
Confidence 7999985 46677899999976431 11 123567889999995 467899999999999999986
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.7e-23 Score=206.64 Aligned_cols=129 Identities=29% Similarity=0.460 Sum_probs=109.2
Q ss_pred EEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 425 VTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
++++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 468999999987 7799999999999999999999999999999999999999999999987643 25799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..|+.+++..... .. ....+..++..+++.. +..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~la 147 (242)
T cd03295 81 IQQI--GLFPHMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVA 147 (242)
T ss_pred ccCc--cccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHH
Confidence 9985 46677899999975421 11 1235778899999974 467899999999999999986
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-23 Score=206.19 Aligned_cols=129 Identities=26% Similarity=0.351 Sum_probs=109.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------------
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------- 488 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELR 81 (242)
T ss_pred EEEEEeeEEEECCeeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHH
Confidence 37899999999888899999999999999999999999999999999999999999999987643
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhc---ccC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAA---EDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++.... ... ....+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~i~~~~q~~--~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 153 (242)
T PRK11124 82 RNVGMVFQQY--NLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLK-PYADRFPLHLSGGQQQRVAIA 153 (242)
T ss_pred hheEEEecCc--cccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 267999985 4667789999986421 111 123577889999995 568999999999999999986
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-23 Score=202.17 Aligned_cols=128 Identities=37% Similarity=0.512 Sum_probs=106.2
Q ss_pred EEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 426 ~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.+++.++ .++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 36899999987 7799999999999999999999999999999999999999999999987644 25799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++. ...+..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~~-~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~qrv~la 146 (211)
T cd03225 81 FQNPD-DQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLE-GLRDRSPFTLSGGQKQRVAIA 146 (211)
T ss_pred ecChh-hhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcH-hhhcCCcccCCHHHHHHHHHH
Confidence 99852 22346799999875422 11 123577899999996 567899999999999999986
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-23 Score=215.95 Aligned_cols=128 Identities=28% Similarity=0.418 Sum_probs=111.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc--eEEEECCcee--------eeEEEe
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG--GEVLLGEHNV--------LPNYFE 494 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~--G~v~~~~~~~--------~~~y~~ 494 (555)
|+++|+++.|++..+++++||+|.+||+++|+|||||||||||++|+|+++|++ |+|.++|.++ .++|++
T Consensus 6 l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~~~r~ig~vf 85 (362)
T TIGR03258 6 IRIDHLRVAYGANTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPHKRGLALLF 85 (362)
T ss_pred EEEEEEEEEECCeEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCHHHCCEEEEE
Confidence 789999999988789999999999999999999999999999999999999999 9999998654 368999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ .+++..||.+|+..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 86 Q~~--~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~~~~LSgGq~QRvaLA 149 (362)
T TIGR03258 86 QNY--ALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLG-DAAAHLPAQLSGGMQQRIAIA 149 (362)
T ss_pred CCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCC-chhhCChhhCCHHHHHHHHHH
Confidence 985 47789999999986532 111 23577889999996 578999999999999999986
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=204.07 Aligned_cols=128 Identities=31% Similarity=0.433 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|+++ .+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999876 799999999999999999999999999999999999999999999987653
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~i~~~~q~~--~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 152 (233)
T cd03258 82 RRIGMIFQHF--NLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELVGLE-DKADAYPAQLSGGQKQRVGIA 152 (233)
T ss_pred hheEEEccCc--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCh-hhhhcChhhCCHHHHHHHHHH
Confidence 267999985 46677899999875321 11 123577899999995 567899999999999999986
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.2e-23 Score=206.56 Aligned_cols=129 Identities=32% Similarity=0.442 Sum_probs=109.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.|+++|+++.|+++.+|+++||+|.+|++++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 ~l~~~~l~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVL 81 (258)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEE
Confidence 47899999999888899999999999999999999999999999999999999999999988643 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..||.+++...... .....+..+|..+++. +..++++..|||||||||+||
T Consensus 82 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGe~qrv~la 146 (258)
T PRK13548 82 PQHS--SLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLA-HLAGRDYPQLSGGEQQRVQLA 146 (258)
T ss_pred ccCC--cCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCH-hHhcCCcccCCHHHHHHHHHH
Confidence 9985 355678999998764221 1123577889999995 567999999999999999986
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.6e-23 Score=204.29 Aligned_cols=128 Identities=30% Similarity=0.502 Sum_probs=108.3
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~ 493 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYL 80 (232)
T ss_pred CeEEEEEEEeCCEEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEe
Confidence 4789999999888899999999999999999999999999999999999999999999987542 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..|+.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrl~la 145 (232)
T cd03218 81 PQEA--SIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFHIT-HLRKSKASSLSGGERRRVEIA 145 (232)
T ss_pred cCCc--cccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 9985 46677899999975421 111 23467889999996 567899999999999999986
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=212.04 Aligned_cols=136 Identities=24% Similarity=0.282 Sum_probs=111.4
Q ss_pred CCCCceEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----
Q 008750 419 RSGRSVVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----- 488 (555)
Q Consensus 419 ~~~~~~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----- 488 (555)
.+++++|+++|+++.|++ ..+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 16 ~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~ 95 (320)
T PRK13631 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKN 95 (320)
T ss_pred CCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccc
Confidence 345678999999999974 3599999999999999999999999999999999999999999999986332
Q ss_pred ---------------------eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhcccc
Q 008750 489 ---------------------LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKV 541 (555)
Q Consensus 489 ---------------------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~ 541 (555)
.++|++|++...+.. .||.+++..... ... ...+..++..+++..+..++++
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~ 174 (320)
T PRK13631 96 NHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSP 174 (320)
T ss_pred cccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 257999986434544 599999965421 111 2346778999999655789999
Q ss_pred CCCChhHHhchhcC
Q 008750 542 SLLSGGEKVNQTLV 555 (555)
Q Consensus 542 ~~LSGGek~Rv~La 555 (555)
..|||||||||+||
T Consensus 175 ~~LSgGqkqRvaiA 188 (320)
T PRK13631 175 FGLSGGQKRRVAIA 188 (320)
T ss_pred ccCCHHHHHHHHHH
Confidence 99999999999986
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.7e-23 Score=213.55 Aligned_cols=132 Identities=30% Similarity=0.417 Sum_probs=112.7
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeE
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPN 491 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~ 491 (555)
+.++|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 38 ~~~~i~i~nl~k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~~~~~~~ig 117 (340)
T PRK13536 38 STVAIDLAGVSKSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARARLARARIG 117 (340)
T ss_pred CceeEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcchHHHhccEE
Confidence 45689999999999988899999999999999999999999999999999999999999999998654 378
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 118 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~-~~~~~~~~~LS~G~kqrv~lA 184 (340)
T PRK13536 118 VVPQFD--NLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLE-SKADARVSDLSGGMKRRLTLA 184 (340)
T ss_pred EEeCCc--cCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhCCChhhCCHHHHHHHHHH
Confidence 999985 46678899999975321 111 12456789999996 568999999999999999986
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=204.96 Aligned_cols=129 Identities=25% Similarity=0.358 Sum_probs=109.3
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+.+|++|+|.++|.++ .++|+
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~ 82 (241)
T PRK14250 3 EIEFKEVSYSSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMV 82 (241)
T ss_pred eEEEEeEEEEeCCeeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEE
Confidence 37899999999887899999999999999999999999999999999999999999999988653 36799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++. +.. .|+.+++..... ......+..++..+++..+..++++..|||||||||+||
T Consensus 83 ~q~~~--~~~-~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la 143 (241)
T PRK14250 83 FQQPH--LFE-GTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIA 143 (241)
T ss_pred ecCch--hch-hhHHHHHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHH
Confidence 99852 433 599999875321 222346788999999965577899999999999999986
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.4e-23 Score=210.97 Aligned_cols=131 Identities=24% Similarity=0.336 Sum_probs=108.9
Q ss_pred eEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.++++|+++.|++ +.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 3789999999963 3599999999999999999999999999999999999999999999998654
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++. .||.+++..... ... ...+..+|..+|+..+..++++..|||||||||+||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~la 157 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIV 157 (286)
T ss_pred HHHhheEEEecChHhccch-hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHH
Confidence 258999986434543 599999975421 111 235678899999965677899999999999999986
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.5e-23 Score=209.52 Aligned_cols=131 Identities=26% Similarity=0.405 Sum_probs=108.5
Q ss_pred eEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.|+++|+++.|++ +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI 81 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHH
Confidence 3789999999974 3699999999999999999999999999999999999999999999988554
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+ ...||.+++..... ... ...+..+|..+++.. +..++++..|||||||||+||
T Consensus 82 ~~~ig~v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iA 156 (287)
T PRK13637 82 RKKVGLVFQYPEYQL-FEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIA 156 (287)
T ss_pred hhceEEEecCchhcc-ccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHH
Confidence 2589999863333 35699999975321 111 235678999999962 468899999999999999986
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-23 Score=210.45 Aligned_cols=130 Identities=25% Similarity=0.363 Sum_probs=108.4
Q ss_pred EEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
|+++|+++.|+. +.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 789999999973 2489999999999999999999999999999999999999999999998654
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhccc--Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+. ..||.+++...... .. ...+..+|..+++..+..++++..|||||||||+||
T Consensus 82 ~~~~ig~v~q~~~~~l~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA 156 (288)
T PRK13643 82 VRKKVGVVFQFPESQLF-EETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIA 156 (288)
T ss_pred HHhhEEEEecCcchhcc-cchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHH
Confidence 25899998643454 35999999754321 11 234678899999965577899999999999999986
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-23 Score=203.13 Aligned_cols=128 Identities=28% Similarity=0.430 Sum_probs=106.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~ 493 (555)
|+++|+++.|+++.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 1 l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~ 80 (222)
T cd03224 1 LEVENLNAGYGKSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYV 80 (222)
T ss_pred CEEeeEEeecCCeeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEe
Confidence 4789999999887899999999999999999999999999999999999999999999987543 26799
Q ss_pred ecCCccCCCCCCCHHHHHHhhcccC----cHHHHHHHHhhC-CCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRC-NFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~-~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..|+.+++....... ....+..++..+ ++ .+..++++..|||||||||+||
T Consensus 81 ~q~~--~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l-~~~~~~~~~~LS~G~~qrv~la 144 (222)
T cd03224 81 PEGR--RIFPELTVEENLLLGAYARRRAKRKARLERVYELFPRL-KERRKQLAGTLSGGEQQMLAIA 144 (222)
T ss_pred cccc--ccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHHhh-hhhhhCchhhCCHHHHHHHHHH
Confidence 9985 4667789999997643211 123456677777 45 4567899999999999999986
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-23 Score=199.14 Aligned_cols=129 Identities=29% Similarity=0.405 Sum_probs=109.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeEEEecC
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQN 496 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~y~~Q~ 496 (555)
.|+++|+++.|+++.+++++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ ..+|++|+
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 81 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEACHYLGHR 81 (207)
T ss_pred EEEEEeEEEEECCeEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcchhhHhhcEEecCC
Confidence 47899999999887899999999999999999999999999999999999999999999988653 25788876
Q ss_pred CccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..|+.+++..... ......+..++..+++.. ..++++..|||||||||+||
T Consensus 82 ~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~G~~qrl~la 139 (207)
T PRK13539 82 N--AMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHLPFGYLSAGQKRRVALA 139 (207)
T ss_pred C--cCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH-HHcCChhhcCHHHHHHHHHH
Confidence 4 35677899999865321 223456888999999964 67899999999999999885
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-23 Score=204.52 Aligned_cols=128 Identities=27% Similarity=0.366 Sum_probs=108.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeEE
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPNY 492 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~y 492 (555)
++++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 l~~~~l~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~ 81 (240)
T PRK09493 2 IEFKNVSKHFGPTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGM 81 (240)
T ss_pred EEEEeEEEEECCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEE
Confidence 6899999999887899999999999999999999999999999999999999999999988653 2579
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+.+..||.+++..... .. ....+..++..+++. +.+++++..|||||||||+||
T Consensus 82 ~~q~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 82 VFQQF--YLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLA-ERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred Eeccc--ccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCh-HHHhcChhhcCHHHHHHHHHH
Confidence 99985 46677899999965321 11 123567899999995 567999999999999999986
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-23 Score=202.96 Aligned_cols=127 Identities=29% Similarity=0.457 Sum_probs=105.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEECCcee-----------
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~-----~p~~G~v~~~~~~~----------- 488 (555)
|+++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|++ +|++|+|.++|.++
T Consensus 1 i~~~~l~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (227)
T cd03260 1 IELRDLNVYYGDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELR 80 (227)
T ss_pred CEEEEEEEEcCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHH
Confidence 47899999998888999999999999999999999999999999999999 99999999988643
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cC-----cHHHHHHHHhhCCCChhhhccc--cCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DW-----RIDDIKGLLGRCNFKADMLDRK--VSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~-----~~~~~~~~L~~~~~~~~~~~~~--~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+. ..||.+++..... .. ....+..++..+++.. ..+++ +..|||||||||+||
T Consensus 81 ~~i~~~~q~~--~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~~LSgG~~qrv~la 153 (227)
T cd03260 81 RRVGMVFQKP--NPF-PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWD-EVKDRLHALGLSGGQQQRLCLA 153 (227)
T ss_pred hhEEEEecCc--hhc-cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCCh-HHhccCCcccCCHHHHHHHHHH
Confidence 267999985 344 6899999975321 11 1245778899999964 45556 599999999999986
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=207.53 Aligned_cols=133 Identities=25% Similarity=0.385 Sum_probs=110.0
Q ss_pred ceEEEEeeeEEcCC---------ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----
Q 008750 423 SVVTIKNLEFGYED---------RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~---------~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----- 488 (555)
+.|+++|+++.|+. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 82 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDY 82 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCch
Confidence 46899999999962 4699999999999999999999999999999999999999999999987543
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcc---cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAE---DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..|+.+++..... .. ..+.+..+|..+++..+..++++..|||||||||+||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 83 SYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHH
Confidence 2679999864345677799888764211 11 1235778999999965677889999999999999986
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.4e-23 Score=205.27 Aligned_cols=133 Identities=19% Similarity=0.246 Sum_probs=110.1
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce-----e---------
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-----V--------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~-----~--------- 488 (555)
+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred ceEEEeeeEEEeCCceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 46899999999987779999999999999999999999999999999999999999999998754 2
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhc---c--c--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAA---E--D--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~--~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...+.+..|+.+++.... . . .....+..++..+++..+.+++++..|||||||||+||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~la 160 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIA 160 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHH
Confidence 268999986434556678888875321 1 1 11346778999999965578999999999999999986
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=205.76 Aligned_cols=131 Identities=25% Similarity=0.392 Sum_probs=110.3
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------ee
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~ 490 (555)
+.+++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 82 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGV 82 (255)
T ss_pred CceEEEeeEEEEECCEEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCe
Confidence 3479999999999888899999999999999999999999999999999999999999999988643 25
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc------------------cC---cHHHHHHHHhhCCCChhhhccccCCCChhHH
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE------------------DW---RIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~------------------~~---~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek 549 (555)
+|++|++ .+++..||.+++..... .. ....+..++..+++. +..++++..||||||
T Consensus 83 ~~~~q~~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 83 VRTFQHV--RLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLL-EHANRQAGNLAYGQQ 159 (255)
T ss_pred EEeccCc--ccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChh-hhhhCChhhCCHHHH
Confidence 6889985 46678899999875311 00 113467788999985 578999999999999
Q ss_pred hchhcC
Q 008750 550 VNQTLV 555 (555)
Q Consensus 550 ~Rv~La 555 (555)
|||+||
T Consensus 160 qrv~la 165 (255)
T PRK11300 160 RRLEIA 165 (255)
T ss_pred HHHHHH
Confidence 999986
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-23 Score=210.14 Aligned_cols=129 Identities=33% Similarity=0.486 Sum_probs=113.4
Q ss_pred eEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEE
Q 008750 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~ 493 (555)
.++++|+++.|+ ++.++++|||+|++||++||+||||||||||+|+|+|+.+|++|+|.+.|.+. .+||+
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~~~~~igy~ 83 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAKVRRRIGYV 83 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHHHHhheEEE
Confidence 578899999999 68999999999999999999999999999999999999999999999998544 36999
Q ss_pred ecCCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..||.|++...+.- ...+.+..+|..+++.. ..++++..||+||||||.||
T Consensus 84 ~~~~--~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~-~~~~~~~~lS~G~kqrl~ia 148 (293)
T COG1131 84 PQEP--SLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLED-KANKKVRTLSGGMKQRLSIA 148 (293)
T ss_pred ccCC--CCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCch-hhCcchhhcCHHHHHHHHHH
Confidence 9986 388999999999876432 12457889999999986 34888999999999999886
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.9e-23 Score=213.67 Aligned_cols=128 Identities=30% Similarity=0.408 Sum_probs=109.2
Q ss_pred EEEEeeeEEcC----CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYE----DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~----~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997 35799999999999999999999999999999999999999999999987643
Q ss_pred -eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.+++..... ... ...+..++..+++. +..++++..|||||||||+||
T Consensus 82 ~~ig~v~q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lA 152 (343)
T PRK11153 82 RQIGMIFQHF--NLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELVGLS-DKADRYPAQLSGGQKQRVAIA 152 (343)
T ss_pred cCEEEEeCCC--ccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 368999985 36678899999975421 111 23567889999996 567899999999999999986
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-23 Score=209.01 Aligned_cols=131 Identities=21% Similarity=0.363 Sum_probs=108.5
Q ss_pred eEEEEeeeEEcCC-----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------
Q 008750 424 VVTIKNLEFGYED-----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~-----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------- 488 (555)
.|+++|+++.|++ +.+++++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 4789999999973 4699999999999999999999999999999999999999999999998643
Q ss_pred ----eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++ ..||.+++..... ... ...+..+|..+++..+..++++..|||||||||+||
T Consensus 82 ~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred HHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHH
Confidence 25899998633343 4699999974321 111 234678899999965578999999999999999986
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.1e-23 Score=204.02 Aligned_cols=129 Identities=29% Similarity=0.405 Sum_probs=110.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y 492 (555)
+|+++|+++.|+++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 ~i~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGR 81 (242)
T ss_pred eEEEEeeEEEcCCeEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeE
Confidence 57899999999887899999999999999999999999999999999999999999999988643 2679
Q ss_pred EecCCccCCCCCCCHHHHHHhhccc--------------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAED--------------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~--------------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..|+.+++...... .....+..++..+++. +..++++..|||||+|||+||
T Consensus 82 ~~q~~--~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~Ge~qrv~la 155 (242)
T TIGR03411 82 KFQKP--TVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLA-DEADRLAGLLSHGQKQWLEIG 155 (242)
T ss_pred ecccc--ccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHH
Confidence 99985 466778999998754210 0123577889999996 567899999999999999986
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-23 Score=199.39 Aligned_cols=126 Identities=36% Similarity=0.466 Sum_probs=106.7
Q ss_pred EEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------eeEE
Q 008750 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------LPNY 492 (555)
Q Consensus 427 ~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------~~~y 492 (555)
++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 i~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 80 (206)
T TIGR03608 1 LKNISKKFGDKIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGY 80 (206)
T ss_pred CcceEEEECCEEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeE
Confidence 46899999888899999999999999999999999999999999999999999999988652 3678
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+++..|+.+++..... . .....+..++..+++. +..++++..||||||||++||
T Consensus 81 ~~q~~--~~~~~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lS~G~~qr~~la 146 (206)
T TIGR03608 81 LFQNF--ALIENETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLN-LKLKQKIYELSGGEQQRVALA 146 (206)
T ss_pred Eecch--hhccCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCch-hhhcCChhhCCHHHHHHHHHH
Confidence 99985 46677899999875321 1 1234577899999994 567899999999999999986
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-23 Score=204.78 Aligned_cols=129 Identities=29% Similarity=0.447 Sum_probs=108.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------------
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------- 488 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~l~~~~l~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 82 (250)
T PRK11264 3 AIEVKNLVKKFHGQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQ 82 (250)
T ss_pred cEEEeceEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHH
Confidence 58999999999887899999999999999999999999999999999999999999999887532
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhc---ccCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..|+.+++.... .... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 83 ~~~~i~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 83 LRQHVGFVFQNF--NLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLA-GKETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred hhhhEEEEecCc--ccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-chhhCChhhCChHHHHHHHHH
Confidence 257999985 4667789999996431 1111 23467889999996 457899999999999999986
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-23 Score=194.54 Aligned_cols=128 Identities=33% Similarity=0.458 Sum_probs=110.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------eEEEe
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNYFE 494 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------~~y~~ 494 (555)
|+++|++++..++.+++++||++++||++||+||||+|||||||+|+|.+.|++|++.+++.++. .+.++
T Consensus 2 i~a~nls~~~~Gr~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlp 81 (259)
T COG4559 2 IRAENLSYSLAGRRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLP 81 (259)
T ss_pred eeeeeeEEEeecceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcc
Confidence 78999999998899999999999999999999999999999999999999999999999987663 35789
Q ss_pred cCCccCCCCCCCHHHHHHhhcccC------cHHH--HHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAEDW------RIDD--IKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~~~------~~~~--~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|+. .+.+..||.|.+......+ .+++ ++..|++.++.. ...|....|||||||||.||
T Consensus 82 Q~s--~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~-la~R~y~~LSGGEqQRVqlA 147 (259)
T COG4559 82 QNS--SLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG-LAGRDYRTLSGGEQQRVQLA 147 (259)
T ss_pred cCc--ccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh-hhccchhhcCchHHHHHHHH
Confidence 973 5777889999998653211 1333 788999999864 77899999999999999986
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.6e-23 Score=209.48 Aligned_cols=129 Identities=23% Similarity=0.376 Sum_probs=111.3
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEe
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFE 494 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~ 494 (555)
.++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++
T Consensus 2 ~l~~~~l~~~~~~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~~~~~~~ig~~~ 81 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQRNIGYLP 81 (301)
T ss_pred EEEEEEEEEEECCEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccChHHHHhceEEec
Confidence 47899999999888899999999999999999999999999999999999999999999988654 368999
Q ss_pred cCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 495 QNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 495 Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++ .+++..|+.|++..... ... ...+..+|..|++. +..++++..|||||||||+||
T Consensus 82 q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LS~G~~qrv~la 145 (301)
T TIGR03522 82 EHN--PLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLR-PEQHKKIGQLSKGYRQRVGLA 145 (301)
T ss_pred CCC--CCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCchhhCCHHHHHHHHHH
Confidence 985 47778899999975332 111 34578899999996 457899999999999999886
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.89 E-value=6e-23 Score=206.96 Aligned_cols=132 Identities=27% Similarity=0.465 Sum_probs=110.0
Q ss_pred eEEEEeeeEEcC---------CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------
Q 008750 424 VVTIKNLEFGYE---------DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------ 488 (555)
Q Consensus 424 ~l~~~~l~~~y~---------~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------ 488 (555)
+|+++|+++.|+ ++.+|+++||+|.+||+++|+|+||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 478999999995 35799999999999999999999999999999999999999999999987543
Q ss_pred -------eeEEEecCCccCCCCCCCHHHHHHhhcc---c----CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 489 -------LPNYFEQNQAEALDLDKTVLETVAEAAE---D----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 489 -------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~---~----~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
.++|++|++...+.+..||.+++..... . .....+..++..+++.....++++..|||||||||+|
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~l 161 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINI 161 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHH
Confidence 2689999863346677899999854211 1 1124577899999996556789999999999999998
Q ss_pred C
Q 008750 555 V 555 (555)
Q Consensus 555 a 555 (555)
|
T Consensus 162 a 162 (265)
T TIGR02769 162 A 162 (265)
T ss_pred H
Confidence 6
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.89 E-value=8e-23 Score=200.72 Aligned_cols=128 Identities=25% Similarity=0.362 Sum_probs=109.8
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------eeEEEecCCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------LPNYFEQNQA 498 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------~~~y~~Q~~~ 498 (555)
++++|+++.|+++.+|+++||+|.+||+++|+||||||||||+++|+|+++|++|.|.+++.++ .++|++|++
T Consensus 1 l~l~~v~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~~~~~~~~~q~~- 79 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKDLHKIGSLIESP- 79 (223)
T ss_pred CEEEeEEEEECCEEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccccccEEEEcCCC-
Confidence 4689999999888899999999999999999999999999999999999999999999987643 467999975
Q ss_pred cCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 499 EALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 499 ~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+.+..|+.+++..... ......+..++..+++. +..++++..|||||+|||+||
T Consensus 80 -~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~~rv~la 136 (223)
T TIGR03740 80 -PLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLT-NTGKKKAKQFSLGMKQRLGIA 136 (223)
T ss_pred -CccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCc-HHHhhhHhhCCHHHHHHHHHH
Confidence 45677899999864321 23355788899999996 467899999999999999885
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.8e-23 Score=199.93 Aligned_cols=127 Identities=25% Similarity=0.401 Sum_probs=107.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
|+++|+++.|+++.+++++||+|.+| +++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 i~~~~~~~~~~~~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~i~~~~q 79 (211)
T cd03264 1 LQLENLTKRYGKKRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQPQKLRRRIGYLPQ 79 (211)
T ss_pred CEEEEEEEEECCEEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccchHHHHhheEEecC
Confidence 47899999998878999999999999 9999999999999999999999999999999988643 2679999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+++..... .. ....+..++..+++. +..++++..|||||||||+||
T Consensus 80 ~~--~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LS~G~~qrv~la 142 (211)
T cd03264 80 EF--GVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG-DRAKKKIGSLSGGMRRRVGIA 142 (211)
T ss_pred CC--cccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH-HHHhCchhhCCHHHHHHHHHH
Confidence 86 36677899999875321 11 134577889999996 467899999999999999986
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 555 | ||||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 7e-22 | ||
| 2iwh_A | 986 | Structure Of Yeast Elongation Factor 3 In Complex W | 5e-07 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 6e-21 | ||
| 2iw3_A | 986 | Elongation Factor 3 In Complex With Adp Length = 98 | 1e-05 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 6e-21 | ||
| 2ix8_A | 976 | Model For Eef3 Bound To An 80s Ribosome Length = 97 | 1e-05 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 6e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-08 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 3e-08 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 3e-08 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 4e-08 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-08 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 3e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 3e-07 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 3e-07 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-07 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-07 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-07 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-07 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-07 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-07 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-06 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-06 | ||
| 1g29_1 | 372 | Malk Length = 372 | 2e-06 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-06 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-06 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 7e-06 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-06 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 7e-06 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 8e-06 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 9e-06 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 1e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-05 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-05 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-05 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 4e-05 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 4e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 4e-05 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 5e-05 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-05 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 7e-05 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 1e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 4e-04 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-04 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 5e-04 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-04 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 5e-04 |
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With Adpnp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp Length = 986 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome Length = 976 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 555 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-83 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-48 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 9e-20 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-64 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-32 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-48 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 1e-28 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 2e-42 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-27 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 8e-41 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 4e-28 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 6e-14 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-28 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 3e-21 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 6e-28 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 5e-13 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 9e-28 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 4e-11 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-23 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-20 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-17 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 2e-19 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 3e-19 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 3e-16 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 1e-15 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 3e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 1e-09 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 4e-16 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 2e-15 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 2e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 3e-15 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 6e-09 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 6e-15 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 4e-11 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 9e-15 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 2e-12 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-14 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 9e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 2e-13 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 6e-13 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-13 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-12 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 5e-13 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 1e-09 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 8e-13 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 2e-12 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 8e-13 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 4e-12 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 1e-12 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 2e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-12 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-10 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 4e-12 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 5e-12 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 5e-12 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 8e-12 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 5e-12 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 2e-10 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 3e-09 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 1e-08 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 8e-12 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 2e-10 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 8e-12 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 6e-07 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-11 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 2e-06 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 4e-11 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 5e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 6e-11 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 7e-09 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-10 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-08 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 1e-10 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-04 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 2e-10 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 3e-07 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 3e-10 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 2e-09 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 3e-10 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 9e-08 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 6e-10 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 4e-08 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-10 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 6e-07 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 9e-10 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 2e-08 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-09 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 6e-08 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-09 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 1e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-08 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 4e-07 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 2e-08 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 1e-06 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 6e-08 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 2e-07 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 3e-07 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 3e-06 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 279 bits (714), Expect = 1e-83
Identities = 95/459 (20%), Positives = 171/459 (37%), Gaps = 97/459 (21%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ S +Y +L +K+ + G+ G NG GK+T +R IA +
Sbjct: 433 GEDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQVDG---- 488
Query: 155 IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMG 214
+ + ++ + + + + L+ V ++
Sbjct: 489 FPTQEECRTVYVEHDID-------------GTHSDTSV---LDFVFESGVGT-------- 524
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274
+ + E GFT + +++ S GW+M+++L + +
Sbjct: 525 ---------------------KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAV 563
Query: 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334
L++ D+LLLDEPTNHLD + WL YL + + ISHD FLD +C I+ E
Sbjct: 564 LRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYEGLKL 623
Query: 335 RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER 394
R Y+GN++++V + + E +L
Sbjct: 624 RKYKGNFTEFVKKCP------------AAKAYE-----------------------ELSN 648
Query: 395 LQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEK 452
E + +P + +K + +++V + N+EF Y + N +
Sbjct: 649 TDLEFKFPEPGYLEGVKTK-------QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSR 701
Query: 453 TAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD--LDKTVLET 510
A+IGPNG GKSTL+ ++ G P GEV N Y +Q+ ++ LDKT E
Sbjct: 702 IAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAFAHIESHLDKTPSEY 760
Query: 511 VAEAAEDWR-IDDIKGLLGRCNFKADMLDRKVSLLSGGE 548
+ + + + + N K+ + G
Sbjct: 761 IQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTP 799
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 179 bits (454), Expect = 4e-48
Identities = 67/359 (18%), Positives = 130/359 (36%), Gaps = 76/359 (21%)
Query: 54 VEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVT-- 111
V+K AKA S + E K + + VK+ N+ Y G +
Sbjct: 634 VKKCPAAKAY------EELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKP 687
Query: 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQE-- 169
+ D+ ++ ++ ++G NGAGK+T + ++ G+ P SG V N +IA++ Q
Sbjct: 688 QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTH-ENCRIAYIKQHAF 746
Query: 170 --FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL----------- 216
E + +T E F+ + ++ E+ + M+ + ++
Sbjct: 747 AHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIH 806
Query: 217 --------------------------------------LDEFDLLQRKAQAVN-LDTLDA 237
+ +L++ ++ V +D +A
Sbjct: 807 SRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEA 866
Query: 238 KVSKLMPE------------LGFTADDG-DRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
S LG + + S G ++++ L Q P L++LD
Sbjct: 867 LASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLD 926
Query: 285 EPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQ 343
EPTN+LD D++ L L + + ++II+H F L ++ + G N+
Sbjct: 927 EPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 92.4 bits (229), Expect = 9e-20
Identities = 41/166 (24%), Positives = 68/166 (40%), Gaps = 7/166 (4%)
Query: 384 RASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRA 443
+K + +E ++ + F + G + Y ++L N+
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDL-CNCEFSLAYGAKILLNKT 454
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
L ++R + I GPNGCGKSTL++ I + G E + Y E +
Sbjct: 455 QLRLKRARRYGICGPNGCGKSTLMRAIANGQV--DGFPTQEECRTV--YVEH-DIDGTHS 509
Query: 504 DKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
D +VL+ V E+ + + IK L F +M+ +S LSGG K
Sbjct: 510 DTSVLDFVFESGVGTK-EAIKDKLIEFGFTDEMIAMPISALSGGWK 554
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 220 bits (563), Expect = 2e-64
Identities = 102/464 (21%), Positives = 174/464 (37%), Gaps = 96/464 (20%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
E+ Y + VK G VG+VG NG GKTT ++I+AGQ P+ + N
Sbjct: 95 EDCVHRYGVNAFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDN 154
Query: 161 MKIAFLSQEFEVSMSRTVREEFMSAFKEEM------EIAGKLERVQKALESAVDDMDLMG 214
+ AF E + R E K + + GK+ + K +D +G
Sbjct: 155 VIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK-------VDEVG 207
Query: 215 RLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGKI 273
+ + L+ + + LD ++ +L SG ++ R+++
Sbjct: 208 KFEEVVKELELE------NVLDRELHQL-------------------SGGELQRVAIAAA 242
Query: 274 LLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330
LL+ DEP+++LD+ + + L + ++++ HD A LD L I
Sbjct: 243 LLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIH--- 299
Query: 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEK 390
V G Y + K T++ IN G
Sbjct: 300 --VVYGEPGVYGIFSKPKG-------------------TRNGINEFLQG----------- 327
Query: 391 KLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERG 450
L++E +P++ + K+ ++V L Y L I +G
Sbjct: 328 ---YLKDENVRFRPYEIRFTKLS-ERVDVERETLVEYPRLVKDYGSFKL-EVEPGEIRKG 382
Query: 451 EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLET 510
E I+GPNG GK+T +K++ G+E+P G+V + Q + + TV E
Sbjct: 383 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDLTVAY-----KPQYIKAEYEGTVYEL 437
Query: 511 VAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+++ + ++ LG D+ DR V LSGGE
Sbjct: 438 LSKIDSSKLNSNFYKTELLKPLGI----IDLYDRNVEDLSGGEL 477
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 4e-32
Identities = 55/256 (21%), Positives = 97/256 (37%), Gaps = 57/256 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V+ + K Y G L+ E++KGE +G+VG NG GKTT ++++AG EEP G V
Sbjct: 358 VEYPRLVKDY-GSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW- 415
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ +A+ Q + TV E ++ + K L +
Sbjct: 416 --DLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPLG------------I 461
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ DR V S G R+++ LL+D
Sbjct: 462 IDLY--------------------------------DRNVEDLSGGELQRVAIAATLLRD 489
Query: 278 PDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV-----E 328
D+ LLDEP+ +LD++ + + K + +++ HD +D + +++
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEP 549
Query: 329 TEMGVSRTYEGNYSQY 344
G + G
Sbjct: 550 GRHGRALPPMGMREGM 565
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 2e-48
Identities = 84/458 (18%), Positives = 163/458 (35%), Gaps = 78/458 (17%)
Query: 101 ENISKSYKGVTVLKDVTWEV-KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159
+ Y V K K +G++G NG GKTT L+I+AG+ P+ G+
Sbjct: 3 GEVIHRY-KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 160 NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
++ + E+ +E S + + +E K L+ V +L +
Sbjct: 62 KDEVLKRFRGKEIYN---YFKELYSNELKIVHKIQYVEYASKFLKGTV------NEILTK 112
Query: 220 FDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD 279
D +K + L + L ++ S G R+ + LL++ D
Sbjct: 113 IDERGKKDEVKELLNMT----NLW----------NKDANILSGGGLQRLLVAASLLREAD 158
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLG--KQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTY 337
+ + D+P+++LD+ + + ++ ++++ HD LD L I S
Sbjct: 159 VYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESS--V 216
Query: 338 EGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQE 397
G S+ + + + K + R + L+ + +
Sbjct: 217 YGRVSKSYAARVG--INNF------------LKGYLPAENMKI---RPDEIKFMLKEVSD 259
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIG 457
+ + + + + D L N + GE I+G
Sbjct: 260 LDLSKDLKTKMK-----------------WTKIIKKLGDFQLVVD-NGEAKEGEIIGILG 301
Query: 458 PNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED 517
PNG GK+T ++++G G V + + +Y Q + D TV + + A++D
Sbjct: 302 PNGIGKTTFARILVGEITADEGSVTPEKQIL--SYKPQR--IFPNYDGTVQQYLENASKD 357
Query: 518 ------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
W +++ L +L+ V+ LSGGE
Sbjct: 358 ALSTSSWFFEEVTKRLNL----HRLLESNVNDLSGGEL 391
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-28
Identities = 47/233 (20%), Positives = 89/233 (38%), Gaps = 50/233 (21%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158
K I K L E K+GE +G++G NG GKTT RI+ G+ D G+V K
Sbjct: 271 KWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK 329
Query: 159 SNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLD 218
+++ Q + TV++ +A K+ + +
Sbjct: 330 --QILSYKPQRIFPNYDGTVQQYLENASKDALS----------------TSSWFFEEVTK 371
Query: 219 EFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP 278
+L +L+ + V S G ++ + L ++
Sbjct: 372 RLNL-----------------HRLL----------ESNVNDLSGGELQKLYIAATLAKEA 404
Query: 279 DLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
DL +LD+P+++LD++ + ++ ++ II HD + D + +I+
Sbjct: 405 DLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRII 457
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-42
Identities = 93/475 (19%), Positives = 167/475 (35%), Gaps = 95/475 (20%)
Query: 90 GASSISSGVKLE-NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
G S +LE + Y + VK+G VG+VG NG GK+T ++I+AGQ
Sbjct: 13 GLVPRSHMEQLEEDCVHRYGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72
Query: 149 PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA-FKEEM-----EIAGKLERVQKA 202
P+ + + AF E + + ++ + K + + +
Sbjct: 73 PNLCGDNDSWDGVIRAFRGNELQ-NYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVI--EL 129
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
L+ D+ + ++ +L +R + S
Sbjct: 130 LK-KADETGKLEEVVKALELENVL---------------------------EREIQHLSG 161
Query: 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE---WLEGYLGKQDVPMVIISHDRAFL 319
G R+++ LL++ DEP+++LD+ L ++ ++++ HD A L
Sbjct: 162 GELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVL 221
Query: 320 DQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAG 379
D L I G Y + K T++ IN
Sbjct: 222 DYLSDIIHVVYGE-----PGVYGIFSQPKG-------------------TRNGINEF--- 254
Query: 380 ANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLL 439
L ++E + + ++VT L Y L
Sbjct: 255 ------------LRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRL 302
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAE 499
I++GE I+GPNG GK+T +K++ G+E+P G++ + Q
Sbjct: 303 -EVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAY-----KPQYI 356
Query: 500 ALDLDKTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
D + TV E +++ + ++ LG D+ DR+V+ LSGGE
Sbjct: 357 KADYEGTVYELLSKIDASKLNSNFYKTELLKPLGI----IDLYDREVNELSGGEL 407
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 1e-27
Identities = 53/234 (22%), Positives = 93/234 (39%), Gaps = 52/234 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
V + K Y G L+ E+KKGE +G+VG NG GKTT ++++AG EEP G +
Sbjct: 288 VTYPRLVKDY-GSFRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW- 345
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ +A+ Q + TV E ++ + K L +
Sbjct: 346 --DLTVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLG------------I 391
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ DR V S G R+++ LL+D
Sbjct: 392 IDLY--------------------------------DREVNELSGGELQRVAIAATLLRD 419
Query: 278 PDLLLLDEPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
D+ LLDEP+ +LD++ + + K + +++ HD +D + +++
Sbjct: 420 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLM 473
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 155 bits (393), Expect = 8e-41
Identities = 80/470 (17%), Positives = 157/470 (33%), Gaps = 98/470 (20%)
Query: 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160
+++ Y + + G+ +GLVG NG GK+T L+I+AG+++P+ G
Sbjct: 81 AHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEW 140
Query: 161 MKIA--FLSQEFEVSMSRTVREEFMSAFKEEM----------EIAGKLERVQKALESAVD 208
+I F E + ++ + ++ + K + + E ++ +E + +
Sbjct: 141 QEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPE 200
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
D+ R + L ++ R + S G R
Sbjct: 201 DVK---RYIKILQL-----------------ENVL----------KRDIEKLSGGELQRF 230
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
++G +Q+ D+ + DEP+++LD+ L ++ + HD + LD L
Sbjct: 231 AIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290
Query: 326 IVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQ-TKDLINRLGAGANSGR 384
+ ++ + + I I R
Sbjct: 291 VC-----------------IIYGVPSVYGVVTLPASVREGINIFLDGHIPAENLRF---R 330
Query: 385 ASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
+ + ++ E+ Q + + +G +V
Sbjct: 331 TEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVE------------------E 372
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504
E ++G NG GK+TL+KL+ G KP G+ + N + Q A
Sbjct: 373 GEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKL-----NVSMKPQKIAPKFP 427
Query: 505 KTVLETVAEAAED-----WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
TV + + D+ L D++D++V LSGGE
Sbjct: 428 GTVRQLFFKKIRGQFLNPQFQTDVVKPLRI----DDIIDQEVQHLSGGEL 473
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 4e-28
Identities = 46/227 (20%), Positives = 80/227 (35%), Gaps = 51/227 (22%)
Query: 105 KSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIA 164
K +G VL E E + ++G NG GKTT ++++AG +PD G I + ++
Sbjct: 360 KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIP---KLNVS 416
Query: 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQ 224
Q+ TVR+ F + + V K L +D+
Sbjct: 417 MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR------------IDDI---- 460
Query: 225 RKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLD 284
D+ V S G R+++ L D+ L+D
Sbjct: 461 ----------------------------IDQEVQHLSGGELQRVAIVLALGIPADIYLID 492
Query: 285 EPTNHLDLD----TIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIV 327
EP+ +LD + + + ++ I+ HD L K++
Sbjct: 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVI 539
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 6e-14
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 29/154 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ Y T G+ ++G NG GKST LK++ G +KP G
Sbjct: 76 PTNLEAHVTHRYSANSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 483 LGEHNVL---------------------------PNYFEQNQAEALDLDKTVLETVAEAA 515
P Y + + V E +
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM 195
Query: 516 EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
E +D+K + + ++L R + LSGGE
Sbjct: 196 EK-SPEDVKRYIKILQLE-NVLKRDIEKLSGGEL 227
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-28
Identities = 53/249 (21%), Positives = 94/249 (37%), Gaps = 55/249 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+ I + +G T+LK ++W++ KG+K L G+NGAGKTT L I+ E SG V
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLF 81
Query: 156 -----KAKSNM-----KIAFLSQEFEVSMSR--TVREEFMSAFKEEMEIAGKLERVQKAL 203
K + I F+S V + +S + G + +
Sbjct: 82 GKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGA---FKSIGVYQDIDDE- 137
Query: 204 ESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263
+ +LL + + + + S+G
Sbjct: 138 -----IRNEAHQLLKLVGMSAKA---------------------------QQYIGYLSTG 165
Query: 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDVPMVIISHDRAF 318
+ R+ + + L+ P +L+LDEP LD E L L + M+ ++H
Sbjct: 166 EKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEE 225
Query: 319 LDQLCTKIV 327
+ +KI+
Sbjct: 226 ITANFSKIL 234
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 93.0 bits (232), Expect = 3e-21
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 23/148 (15%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV-L 482
++ + + + + + + + I +G+K + G NG GK+TLL ++ E G V L
Sbjct: 21 LIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 483 LGE--HNVLPNYFE---------QNQAEALDLDKTVLETVAEAAED----WRI---DDI- 523
G+ V + + E + V++ V A ++ +
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN 140
Query: 524 --KGLLGRCNFKADMLDRKVSLLSGGEK 549
LL + + + LS GEK
Sbjct: 141 EAHQLLKLVGM-SAKAQQYIGYLSTGEK 167
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 6e-28
Identities = 50/230 (21%), Positives = 90/230 (39%), Gaps = 56/230 (24%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-- 152
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G
Sbjct: 8 GSKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 153 -----NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ K K KI FL +E V +S ++ ++ L V K ++ +
Sbjct: 67 IYNGVPITKVKG--KIFFLPEEIIV-------PRKISV-EDYLKAVASLYGV-KVNKNEI 115
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
D L+ ++L K + + S G R
Sbjct: 116 MD------ALESVEVLDLK----------------------------KKLGELSQGTIRR 141
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISH 314
+ L LL + ++ +LD+P +D D+ + + K+ ++I S
Sbjct: 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSR 191
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 5e-13
Identities = 37/140 (26%), Positives = 57/140 (40%), Gaps = 22/140 (15%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY+ +L R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 9 SKLEIRDLSVGYDKPVL-ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 483 LGEHNV---------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD----IKGLLGR 529
+ LP + + +V + + A + + I L
Sbjct: 68 YNGVPITKVKGKIFFLP------EEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 121
Query: 530 CNFKADMLDRKVSLLSGGEK 549
L +K+ LS G
Sbjct: 122 VEVLD--LKKKLGELSQGTI 139
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 9e-28
Identities = 50/249 (20%), Positives = 100/249 (40%), Gaps = 66/249 (26%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--- 154
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 16 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 75
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKA-LES 205
+ + I++L +E + E + + +E
Sbjct: 76 GKNVVEEPHEVRK--LISYLPEEAGAYRNMQGI--------EYLRFVAGFYASSSSEIEE 125
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
V+ + L ++ V+++S G
Sbjct: 126 MVER------ATEIAGLGEKI---------------------------KDRVSTYSKGMV 152
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVIISHDRAF 318
++ + + L+ +P L +LDEPT+ LD ++ ++ + +++ SH+
Sbjct: 153 RKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK----QASQEGLTILVSSHNMLE 208
Query: 319 LDQLCTKIV 327
++ LC +I
Sbjct: 209 VEFLCDRIA 217
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 14/138 (10%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V
Sbjct: 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 73
Query: 483 LGEHNVLPNYFE--QN-----QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGR 529
+ NV+ E + + + +E + A + ++
Sbjct: 74 VFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEI 133
Query: 530 CNFKADMLDRKVSLLSGG 547
+ + +VS S G
Sbjct: 134 AGLG-EKIKDRVSTYSKG 150
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-25
Identities = 46/228 (20%), Positives = 88/228 (38%), Gaps = 48/228 (21%)
Query: 95 SSGVKLENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ + +EN+ Y+ + + + +++ KG+ + ++G NG GK+T L ++ G P G
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 154 VIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ + I F+ Q F + +V D+ LM
Sbjct: 62 IEVYQ---SIGFVPQFFSSPFAYSVL-----------------------------DIVLM 89
Query: 214 GRL--LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG 271
GR ++ F + D + + L R S S G + + +
Sbjct: 90 GRSTHINTFAKPKSH------D--YQVAMQALDYLN-LTHLAKREFTSLSGGQRQLILIA 140
Query: 272 KILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
+ + + L+LLDEPT+ LDL + L Q++ +V +H
Sbjct: 141 RAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 99.2 bits (248), Expect = 1e-23
Identities = 35/142 (24%), Positives = 67/142 (47%), Gaps = 25/142 (17%)
Query: 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++++NL F Y+ + LF + N + +G+ A++G NGCGKSTLL L++G+ +P G++
Sbjct: 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 482 -LLGEHNVLPNYFEQNQAEALDLDKTVLETVA------------EAAEDWRI-DDIKGLL 527
+ +P Q + +VL+ V + D+++ L
Sbjct: 63 EVYQSIGFVP------QFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYL 116
Query: 528 GRCNFKADMLDRKVSLLSGGEK 549
+ R+ + LSGG++
Sbjct: 117 NLTHLA----KREFTSLSGGQR 134
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 90.1 bits (224), Expect = 2e-20
Identities = 47/242 (19%), Positives = 93/242 (38%), Gaps = 59/242 (24%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
++L+N+ + G L+++ EV GEKV ++G NG+GKTT LR I+G P SGN
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGL-LPYSGN 59
Query: 154 VIKAKSNMK--------IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ ++ L + +E+ + TV + EE++ + + + L+
Sbjct: 60 IFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIV--YLYEELKGLDR-DLFLEMLK- 113
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
+L +E R + S+G
Sbjct: 114 -------ALKLGEEI--------------------------------LRRKLYKLSAGQS 134
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTK 325
+ + L P+++ LDEP ++D + Y+ + ++++H+ L+
Sbjct: 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKEY 194
Query: 326 IV 327
Sbjct: 195 KA 196
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 81.6 bits (202), Expect = 2e-17
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 424 VVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
++ +KN+ + + NL + GEK I+GPNG GK+TLL+ I GL P G
Sbjct: 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG 58
Query: 480 EVLLGEHNV--LPNY----FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCN 531
+ + V + NY +A + + TV + V E D +L
Sbjct: 59 NIFINGMEVRKIRNYIRYSTNLPEAYEIGV--TVNDIVYLYEELKGLDRDLFLEMLKALK 116
Query: 532 FKADMLDRKVSLLSGGEK 549
++L RK+ LS G+
Sbjct: 117 LGEEILRRKLYKLSAGQS 134
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 86.8 bits (216), Expect = 2e-19
Identities = 54/230 (23%), Positives = 80/230 (34%), Gaps = 72/230 (31%)
Query: 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---KAKSNM---- 161
T L ++ EV+ GE + LVG NGAGK+T L +AG G++ +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAG-MTSGKGSIQFAGQPLEAWSATK 70
Query: 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL-- 216
A+LSQ+ + V + + +
Sbjct: 71 LALHRAYLSQQQTPPFATPVWH-------------------------YL----TLHQHDK 101
Query: 217 LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQ 276
+LL A A+ LD R S G R+ L ++LQ
Sbjct: 102 TRT-ELLNDVAGALALDDK-----------------LGRSTNQLSGGEWQRVRLAAVVLQ 143
Query: 277 D-------PDLLLLDEPTNHLDL----DTIEWLEGYLGKQDVPMVIISHD 315
LLLLDEP N LD+ + L L +Q + +V+ SHD
Sbjct: 144 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA-LSQQGLAIVMSSHD 192
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 86.5 bits (215), Expect = 3e-19
Identities = 26/131 (19%), Positives = 40/131 (30%), Gaps = 27/131 (20%)
Query: 436 DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN-------- 487
+ + + GE ++GPNG GKSTLL + G+ G +
Sbjct: 12 ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATK 70
Query: 488 ------VLPNYFEQNQAEALDLDKTVLETVA---EAAEDWRIDDIKGLLGRCNFKADMLD 538
L Q + V + + + + G D L
Sbjct: 71 LALHRAYLS------QQQTPPFATPVWHYLTLHQHDKTRTEL--LNDVAGALAL-DDKLG 121
Query: 539 RKVSLLSGGEK 549
R + LSGGE
Sbjct: 122 RSTNQLSGGEW 132
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 78.4 bits (194), Expect = 3e-16
Identities = 25/67 (37%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 424 VVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
++ ++ L + Y D L N+ I+RGE TAI+G NG GKSTL + G+ KP G +
Sbjct: 7 ILKVEELNYNYSDGTHALKG-INMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 482 LLGEHNV 488
L +
Sbjct: 66 LFDNKPI 72
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 76.4 bits (189), Expect = 1e-15
Identities = 51/259 (19%), Positives = 99/259 (38%), Gaps = 80/259 (30%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+K+E ++ +Y G LK + +K+GE ++G NG GK+T + G +P SG ++
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILF 67
Query: 156 ----KAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF--------KEEMEIA 193
S I L + + + S +V ++ +F ++E+
Sbjct: 68 DNKPIDYSRKGIMKLRE--SIGIVFQDPDNQLFSASVYQDV--SFGAVNMKLPEDEIR-- 121
Query: 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG 253
+RV AL+ ++ L
Sbjct: 122 ---KRVDNALK------------------------RTGIEHL-----------------K 137
Query: 254 DRLVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVP 308
D+ S G Q R+++ +L+ +P +L+LDEPT LD + ++ L + +
Sbjct: 138 DKPTHCLSFG-QKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGIT 196
Query: 309 MVIISHDRAFLDQLCTKIV 327
++I +HD + C +
Sbjct: 197 IIIATHDIDIVPLYCDNVF 215
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 77.9 bits (193), Expect = 3e-16
Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 61/253 (24%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---- 154
+ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 9 RTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFEN 68
Query: 155 --IKAKSNMKIAFL--------SQEFEVSMSRTVREEFMSAFKEEME--IAGKLERVQKA 202
I K ++ Q + M TV E + E + +
Sbjct: 69 KDITNKEPAELYHYGIVRTFQTPQPLK-EM--TVLENLLIGEICPGESPLNSLFYKKWIP 125
Query: 203 LESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262
E + + ++L+ L DR S
Sbjct: 126 KEEEMVEKAF--KILEFLKLSHLY---------------------------DRKAGELSG 156
Query: 263 GWQMRMSLGKILLQDPDLLLLDEP--------TNHLDLDTIEWLEGYLGKQDVPMVIISH 314
G + +G+ L+ +P ++++DEP + + + + L+ + + +II H
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDI-FNHVLELK----AKGITFLIIEH 211
Query: 315 DRAFLDQLCTKIV 327
+ +
Sbjct: 212 RLDIVLNYIDHLY 224
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ ++++ +G+ T IIGPNG GKSTL+ +I G K G V ++
Sbjct: 24 DGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDI 71
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 4e-16
Identities = 55/260 (21%), Positives = 100/260 (38%), Gaps = 83/260 (31%)
Query: 98 VKLENISKSYKGVT-----VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152
+++ N+S + T L++V+ + +GE + + G G+GK+T L+I+AG EP SG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 153 NVIKAKSNMKIAFLSQEFEVSM----------SRTVREEFMSAF-------KEEMEIAGK 195
+V+ K + + + + + V +E AF +
Sbjct: 63 DVLYDGERKKGYEIRR--NIGIAFQYPEDQFFAERVFDEV--AFAVKNFYPDRDPV---- 114
Query: 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDR 255
V+KA+E V LD K DR
Sbjct: 115 -PLVKKAME------------------------FVGLDFDSFK---------------DR 134
Query: 256 LVASFSSGWQM-RMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDV 307
+ S G + R+++ +++ +PD+L+LDEP LD L +E
Sbjct: 135 VPFFLSGG-EKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVE----KWKTLGK 189
Query: 308 PMVIISHDRAFLDQLCTKIV 327
+++ISHD + ++V
Sbjct: 190 TVILISHDIETVINHVDRVV 209
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-15
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 425 VTIKNLEFGYEDRLLFNRA-----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479
+ + N+ + + +L I GE + G G GKSTLL+++ GL +P G
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 480 EVLLG 484
+VL
Sbjct: 63 DVLYD 67
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 78.7 bits (193), Expect = 2e-15
Identities = 85/631 (13%), Positives = 178/631 (28%), Gaps = 173/631 (27%)
Query: 1 MDVTTTTTNLR-SSFFSTLQPRFTPFASAKSFTNSLNFTKKQRPRITCQVSAATVEKKSI 59
MD T + S + F K + + ++ E I
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------KSILS------KEEIDHI 54
Query: 60 AKAQSDVES---LF-------SSSADEF----ENKKYS----------NKQSNTGASSIS 95
++ V LF +F Y + S I
Sbjct: 55 IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIE 114
Query: 96 SGVKLENISKSY--------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147
+L N ++ + + L+ E++ + V + GV G+GKT + +
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-VALDVCLS 173
Query: 148 EP------------DSGNVIKAKSNMKI--AFLSQEFEVSMSRTVREEFMSAFKEEME-I 192
+ N ++ +++ L Q + + T R + S K + I
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSI 230
Query: 193 AGKLER--VQKALESA---VDDM-DLMGRLLDEFD------LLQRKAQAVNLDTLDAKVS 240
+L R K E+ + ++ + + + F+ L R Q D L A +
Sbjct: 231 QAELRRLLKSKPYENCLLVLLNVQN--AKAWNAFNLSCKILLTTRFKQVT--DFLSAATT 286
Query: 241 KLMP----ELGFTADDGDRLVASFSSGWQMRMSLGK----ILLQDPDLL-----LLDEPT 287
+ + T D+ L+ + + +L +P L + +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 288 NHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY-VL 346
D W ++ + +I + L+ L E R + + V
Sbjct: 342 ATWD----NWK--HVNCDKLTTII----ESSLNVL----EPAEY---RKM---FDRLSVF 381
Query: 347 EKAAWIESQYAA--WEKQQREIEQTKDLINRLGAGANSGRASSAEKKLER-------LQE 397
+A I + + W + ++N+L + S EK+ + +
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM--VVVNKL------HKYSLVEKQPKESTISIPSIYL 433
Query: 398 EEQIEKPFQRKQMKIRFPERGRSGRSVVT---IKNLEFGY---------------EDRLL 439
E +++ + + ++ + I Y E L
Sbjct: 434 ELKVKLE-NEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTL 492
Query: 440 FNRANLT---IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQN 496
F L +E+ K ++L + L+ + Y N
Sbjct: 493 FRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQLKFYK-------------PYICDN 537
Query: 497 QAEALDLDKTVLETVAEAAEDWRIDDIKGLL 527
+ L +L+ + + E+ LL
Sbjct: 538 DPKYERLVNAILDFLPKIEENLICSKYTDLL 568
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 76.6 bits (189), Expect = 3e-15
Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 61/216 (28%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 154 VIKAKSNM-------------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ + +I + Q F + SRTV +E+ K E
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALP----LELDNTPKDEV 140
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L + D+ S L
Sbjct: 141 KRRVTE-----------LLSLVGLGDKH---------DSYPSNL---------------- 164
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+++ + L +P +LL D+ T+ LD T
Sbjct: 165 --SGGQKQRVAIARALASNPKVLLCDQATSALDPAT 198
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 6e-09
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 418 GRSGRSVVTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473
+ ++ + N+ + +A +L + G+ +IG +G GKSTL++ + L
Sbjct: 18 DDDDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL 77
Query: 474 EKPRGGEVLLGEHNV 488
E+P G VL+ +
Sbjct: 78 ERPTEGSVLVDGQEL 92
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 6e-15
Identities = 25/72 (34%), Positives = 43/72 (59%), Gaps = 1/72 (1%)
Query: 85 KQSNTGASSISSGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII 143
+ + S ++ + K Y G ++ V++++++GE VGL+G +G+GKTT LR+I
Sbjct: 2 RGHHHHHHHGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLI 61
Query: 144 AGQEEPDSGNVI 155
AG E P G+V
Sbjct: 62 AGLERPTKGDVW 73
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 4e-11
Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 410 MKIRFPERGRSGRSVVTIKNLEFGYEDRLL-FNRANLTIERGEKTAIIGPNGCGKSTLLK 468
M+ ++ +E Y + I GE ++GP+G GK+T+L+
Sbjct: 1 MRGHHHHHHHGSMTI-EFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILR 59
Query: 469 LIMGLEKPRGGEVLLGEHNV 488
LI GLE+P G+V +G V
Sbjct: 60 LIAGLERPTKGDVWIGGKRV 79
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 74.9 bits (185), Expect = 9e-15
Identities = 23/60 (38%), Positives = 41/60 (68%)
Query: 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ + + ++SKS++ VL D++ + GE + ++G +G GKTT LR +AG E+PDSG +
Sbjct: 2 TAALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 22/66 (33%), Positives = 40/66 (60%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + I +L +++ + N +L+++ GE IIG +GCGK+TLL+ + G E+P GE+
Sbjct: 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 483 LGEHNV 488
L +
Sbjct: 63 LSGKTI 68
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 2e-14
Identities = 53/219 (24%), Positives = 95/219 (43%), Gaps = 71/219 (32%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 VI---KAKSNMKIAFLS-QEFEVSM---------SRTVREEFMSAF--------KEEMEI 192
+ + ++ + ++ ++ M + T E + AF KEE+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFEN-I-AFPLTNMKMSKEEIR- 118
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+RV++ + +LD +L + +
Sbjct: 119 ----KRVEEVAK-----------ILDIHHVLNHFPREL---------------------- 141
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S Q R++L + L++DP LLLLDEP ++LD
Sbjct: 142 --------SGAQQQRVALARALVKDPSLLLLDEPFSNLD 172
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 9e-13
Identities = 35/154 (22%), Positives = 59/154 (38%), Gaps = 44/154 (28%)
Query: 425 VTIKNLE--FGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE+
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 483 LGEHNV-------LP-----------NY-------FEQNQAEALDLDKT----VLETVAE 513
+ V +P + +N A L K + + V E
Sbjct: 64 FDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEE 123
Query: 514 AAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
A+ I +L+ LSG
Sbjct: 124 VAKILDIH-------------HVLNHFPRELSGA 144
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 20/58 (34%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+++E++S+ + L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKW-KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 69.1 bits (170), Expect = 6e-13
Identities = 40/147 (27%), Positives = 65/147 (44%), Gaps = 35/147 (23%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNV--LP-----------NY--F-----EQNQAEALDLDKT-VLETVAEAAEDWRIDD 522
+V L NY F ++N + + K + V + A D +I+
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+LDR LSGGE+
Sbjct: 119 ------------HLLDRNPLTLSGGEQ 133
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 43/147 (29%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ ++N+ + + N NL I+ GE A++GP+G GKSTLL I G+ KP G++
Sbjct: 4 IKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E +V LP N+ +N A L+L K + + V E A+ I
Sbjct: 64 EKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHI 123
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
D +L+R LSGG
Sbjct: 124 D-------------KLLNRYPWQLSGG 137
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 2e-12
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+KLENI K + T L ++ ++K GE + L+G +G+GK+T L IAG +P SG +
Sbjct: 2 VEIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKI 60
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 68.4 bits (168), Expect = 5e-13
Identities = 60/273 (21%), Positives = 105/273 (38%), Gaps = 82/273 (30%)
Query: 89 TGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148
S + + + + KS+ + VLK + +++GE V ++G +G+GK+T LR + E+
Sbjct: 16 PRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75
Query: 149 PDSGNVI--------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194
D G +I K + + + F Q F + TV A M++
Sbjct: 76 FDEGEIIIDGINLKAKDTNLNKVREEVGMVF--QRFNLFPHMTVLNNITLA---PMKVRK 130
Query: 195 --KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ + KA+E LL + V L D
Sbjct: 131 WPREKAEAKAME-----------------LLDK----VGL-----------------KDK 152
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQ 305
S S G R+++ + L +P ++L DEPT+ LD L ++ L +
Sbjct: 153 AHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK----QLANE 208
Query: 306 DVPMVIISH---------DR-AFLDQLCTKIVE 328
+ MV+++H DR F+D I+E
Sbjct: 209 GMTMVVVTHEMGFAREVGDRVLFMDG--GYIIE 239
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 58.0 bits (141), Expect = 1e-09
Identities = 21/83 (25%), Positives = 36/83 (43%)
Query: 406 QRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKST 465
RG ++ + L+ + + N+ I GE +IGP+G GKST
Sbjct: 6 HHHHHSSGLVPRGSHMLQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKST 65
Query: 466 LLKLIMGLEKPRGGEVLLGEHNV 488
L+ + LE GE+++ N+
Sbjct: 66 FLRCLNLLEDFDEGEIIIDGINL 88
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 67.5 bits (166), Expect = 8e-13
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 2e-12
Identities = 17/63 (26%), Positives = 32/63 (50%)
Query: 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485
+++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 486 HNV 488
++
Sbjct: 68 QDI 70
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 8e-13
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G + G
Sbjct: 12 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFG 71
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ +V LP +Y +N A L + K + + V AAE
Sbjct: 72 DRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAE---- 127
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ + ++L+R + LSGG
Sbjct: 128 --LLQI-------EELLNRYPAQLSGG 145
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 26/59 (44%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 10 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI 68
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 1e-12
Identities = 37/147 (25%), Positives = 62/147 (42%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+ + NL+ + + + ++ GE A++GP+GCGK+T L ++ G+ KP GE+
Sbjct: 4 IRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFD 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
+ V +P NY +N A L + V + V E A
Sbjct: 64 DVLVNDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIAR---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ ++LDRK + LSGG
Sbjct: 120 --KLLI-------DNLLDRKPTQLSGG 137
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+++ N+ K + V + V++EVK GE V L+G +G GKTT L ++AG +P SG +
Sbjct: 2 PSIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI 60
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 57/238 (23%), Positives = 93/238 (39%), Gaps = 61/238 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
++ ENI K +G +LK ++ VKKGE V ++G +G+GK+T L I+ + P G
Sbjct: 5 LRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLE 64
Query: 153 --NVIKAKS-------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLERVQK 201
V N K+ F+ Q + T E + M G K E ++
Sbjct: 65 GKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVP----MLKMGKPKKEAKER 120
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
LL E L + L K +L S
Sbjct: 121 GEY-----------LLSELGLGDK---------LSRKPYEL------------------S 142
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT---IEWLEGYLGKQDVPMVIISHDR 316
G Q R+++ + L +P LL DEPT +LD + + + + +V+++H+R
Sbjct: 143 GGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHER 200
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 58.7 bits (143), Expect = 5e-10
Identities = 20/66 (30%), Positives = 37/66 (56%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N++ + +L++++GE +IIG +G GKSTLL ++ L+ P G+V
Sbjct: 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVF 62
Query: 483 LGEHNV 488
L V
Sbjct: 63 LEGKEV 68
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 66.9 bits (164), Expect = 4e-12
Identities = 40/153 (26%), Positives = 67/153 (43%), Gaps = 43/153 (28%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++ +G
Sbjct: 4 VRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIG 63
Query: 485 EHNV--------LP-----------NY-------FEQNQAEALDLDKT----VLETVAEA 514
+ V +P +Y N A L L K + + V E
Sbjct: 64 DKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREV 123
Query: 515 AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
AE + GL ++L+RK LSGG
Sbjct: 124 AE------LLGL-------TELLNRKPRELSGG 143
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 5e-12
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 5e-12
Identities = 25/59 (42%), Positives = 41/59 (69%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
+ V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 2 ASVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 60
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 8e-12
Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 37/147 (25%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 4 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 63
Query: 485 EHNV--LP-----------NY-------FEQNQAEALDLDKT----VLETVAEAAEDWRI 520
E + P +Y +N + L L + + V + AE
Sbjct: 64 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAE---- 119
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGG 547
+ L A +LDRK LSGG
Sbjct: 120 --VLQL-------AHLLDRKPKALSGG 137
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 5e-12
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
+ KN+ F Y ++ + NL ++ G+ A++G +GCGKST ++L+ L P G V
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 482 LLGEHNV 488
+ ++
Sbjct: 448 SIDGQDI 454
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 18/67 (26%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V + F Y + +L +++G+ A++G +GCGKST+++L+ P G V
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090
Query: 482 LLGEHNV 488
L +
Sbjct: 1091 FLDGKEI 1097
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-09
Identities = 54/265 (20%), Positives = 98/265 (36%), Gaps = 85/265 (32%)
Query: 58 SIAKAQSDVESLFS-----SSADEFENKKYSNKQSNTGASSISSGVKLENISKSY---KG 109
AKA + D + + + + V+ + +Y
Sbjct: 993 DYAKATVSASHIIRIIEKTPEIDSYSTQGLKP-------NMLEGNVQFSGVVFNYPTRPS 1045
Query: 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNV------IKAKSN 160
+ VL+ ++ EVKKG+ + LVG +G GK+T ++ E +P +G+V IK + N
Sbjct: 1046 IPVLQGLSLEVKKGQTLALVGSSGCGKST---VVQLLERFYDPMAGSVFLDGKEIK-QLN 1101
Query: 161 MK-----IAFLSQE---FEVSMSRTVRE------EFMSAFKEEMEIAGKLERVQKALESA 206
++ + +SQE F ++ E EE+ A
Sbjct: 1102 VQWLRAQLGIVSQEPILF----DCSIAENIAYGDNSRVVSYEEIVRA------------- 1144
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
A+ N+ + L P+ + GD+ S G +
Sbjct: 1145 --------------------AKEANIHQF---IDSL-PD-KYNTRVGDKGT-QLSGGQKQ 1178
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLD 291
R+++ + L++ P +LLLDE T+ LD
Sbjct: 1179 RIAIARALVRQPHILLLDEATSALD 1203
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 65/259 (25%), Positives = 112/259 (43%), Gaps = 75/259 (28%)
Query: 58 SIAKAQSDVESLFSSSADEFENKKYSNKQSNTGA--SSISSGVKLENISKSY---KGVTV 112
+ A A+ +F +NK + S +G +I ++ +NI SY K V +
Sbjct: 350 AFANARGAAYEVFKI----IDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQI 405
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV------IKAKSNMK---- 162
LK + +VK G+ V LVG +G GK+T ++++ +P G V I+ N++
Sbjct: 406 LKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIR-TINVRYLRE 464
Query: 163 -IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LERVQKALESAVDDMDLM 213
I +SQE F + T+ E I G+ ++ ++KA++ A
Sbjct: 465 IIGVVSQEPVLF----ATTIAE----------NIRYGREDVTMDEIEKAVKEA------- 503
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM-RMSLGK 272
+F + KL P F G+R + SG Q R+++ +
Sbjct: 504 --NAYDF------------------IMKL-PH-QFDTLVGER--GAQLSGGQKQRIAIAR 539
Query: 273 ILLQDPDLLLLDEPTNHLD 291
L+++P +LLLDE T+ LD
Sbjct: 540 ALVRNPKILLLDEATSALD 558
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 8e-12
Identities = 57/246 (23%), Positives = 104/246 (42%), Gaps = 62/246 (25%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG----- 152
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G
Sbjct: 7 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 66
Query: 153 --NVIKAKSNMKIAFLSQEFEVSMSRT----VREEF-----MSAFKEEMEIAGKLERVQK 201
N+ + ++ + ++ + RT V + F M+ + ME ++ + K
Sbjct: 67 GQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSK 126
Query: 202 --ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
A E A+ L + V +D + P
Sbjct: 127 HDARERALK-------------YLAK----VGID---ERAQGKYP-------------VH 153
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPMVII 312
S G Q R+S+ + L +PD+LL DEPT+ LD L ++ L ++ MV++
Sbjct: 154 LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQ----QLAEEGKTMVVV 209
Query: 313 SHDRAF 318
+H+ F
Sbjct: 210 THEMGF 215
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 2e-10
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 21/92 (22%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503
+L G+ +IIG +G GKST L+ I LEKP G +++ N+ + Q + D
Sbjct: 26 SLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 85
Query: 504 D---------------------KTVLETVAEA 514
+ TVLE V EA
Sbjct: 86 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 8e-12
Identities = 32/120 (26%), Positives = 57/120 (47%), Gaps = 14/120 (11%)
Query: 373 INRLGAGAN---SGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKN 429
+N L N AS AE+ E L EE+ + P + ++R G + KN
Sbjct: 310 LNELSNQFNMIQMALAS-AERIFEILDLEEEKDDPDAVELREVR-------GE--IEFKN 359
Query: 430 LEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ F Y + + + I+ G+K A++GP G GK+T++ L+M G++L+ ++
Sbjct: 360 VWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDI 419
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 6e-07
Identities = 21/42 (50%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTT 138
++ +N+ SY K VLKD+T+ +K G+KV LVG G+GKTT
Sbjct: 355 IEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTT 396
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 40/209 (19%), Positives = 75/209 (35%), Gaps = 50/209 (23%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ +++++ Y G +L+++++ + G++VGL+G G+GK+T L G +
Sbjct: 20 MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEIQ 78
Query: 156 KAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
+ + Q+ S T R+ + + + + K +
Sbjct: 79 IDGVSWDSITLEQWRKAFGVIPQK-VFIFSGTFRKN-LDPNAAHSD-----QEIWKVADE 131
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
L + K LD + D G S G +
Sbjct: 132 V--------GLRSVIEQFPGK--------LDFVLV----------DGGC----VLSHGHK 161
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
M L + +L +LLLDEP+ HLD T
Sbjct: 162 QLMCLARSVLSKAKILLLDEPSAHLDPVT 190
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 415 PERGRSGRSVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472
P G+ +T+K+L Y + + +I G++ ++G G GKSTLL +
Sbjct: 15 PSGGQ-----MTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLR 69
Query: 473 LEKPRG 478
L G
Sbjct: 70 LLNTEG 75
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 6/87 (6%)
Query: 407 RKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTL 466
G +++IK+L ED+ + +L + GE AI+GPNG GKSTL
Sbjct: 3 SSHHHHHSSGLVPRGSHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTL 62
Query: 467 LKLIMGLEKPR----GGEVLLGEHNVL 489
+ G + GG V ++L
Sbjct: 63 SATLAG--REDYEVTGGTVEFKGKDLL 87
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 5e-11
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 6/71 (8%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR----G 478
S + I++L + + NL + +GE A++GPNG GKSTL K++ G P
Sbjct: 2 SQLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTVER 59
Query: 479 GEVLLGEHNVL 489
GE+LL N+L
Sbjct: 60 GEILLDGENIL 70
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 62.1 bits (152), Expect = 6e-11
Identities = 25/66 (37%), Positives = 41/66 (62%), Gaps = 2/66 (3%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y+ ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 483 LGEHNV 488
+ H++
Sbjct: 68 IDGHDL 73
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 55.6 bits (135), Expect = 7e-09
Identities = 43/214 (20%), Positives = 86/214 (40%), Gaps = 64/214 (29%)
Query: 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GK----LE 197
++ + Q+ +R++ + I+ +E
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLL----NRSIID----------NISLANPGMSVE 113
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
+V A + A +F +S+L E G+ G++
Sbjct: 114 KVIYAAKLAG---------AHDF------------------ISEL-RE-GYNTIVGEQGA 144
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
S G + R+++ + L+ +P +L+ DE T+ LD
Sbjct: 145 -GLSGGQRQRIAIARALVNNPKILIFDEATSALD 177
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 1e-10
Identities = 41/126 (32%), Positives = 57/126 (45%), Gaps = 24/126 (19%)
Query: 441 NRANLTIERG-EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--LPNY----- 492
R N+ E G + ++GP G GKS L+LI G+ KP GEV L ++ LP
Sbjct: 14 FRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIG 73
Query: 493 --FEQNQAEALDLDKTVLETVA-------EAAEDWRIDDIKGLLGRCNFKADMLDRKVSL 543
Q AL +V +A D R+ ++ LG A +LDRK +
Sbjct: 74 FVP---QDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGI----AHLLDRKPAR 126
Query: 544 LSGGEK 549
LSGGE+
Sbjct: 127 LSGGER 132
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 3/54 (5%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K + D + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRLNVDFE---MGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVR 56
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 1e-10
Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 11/108 (10%)
Query: 384 RAS-SAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
RAS SA++ LE L E+ IE+ + V+ +N+EF Y +
Sbjct: 308 RASASAKRVLEVLNEKPAIEEADN--------ALALPNVEGSVSFENVEFRYFENTDPVL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ N +++ G A++G G GKSTL+ LI L P G V + E +V
Sbjct: 360 SGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 42.5 bits (101), Expect = 3e-04
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 98 VKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V EN+ Y T VL V + VK G V ++G G+GK+T + +I +P+ G V
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV 400
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 59.8 bits (146), Expect = 3e-10
Identities = 15/66 (22%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 424 VVTIKNLEFGYEDR-LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LGEHNV 488
+ +
Sbjct: 61 IDGQPI 66
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 2e-09
Identities = 40/213 (18%), Positives = 82/213 (38%), Gaps = 56/213 (26%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-- 154
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 155 -------IKAKS-NMKIAFLSQEFEVSMSRTVRE-----EFMSAFKEEMEIAGKLERVQK 201
I ++ +I F+SQ+ M+ T+RE E++ L
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQD-SAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAF--- 117
Query: 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFS 261
F V + P+ + G+R V S
Sbjct: 118 ---------------ARSF------------------VENM-PD-QLNTEVGERGV-KIS 141
Query: 262 SGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
G + R+++ + L++P +L+LDE T LD ++
Sbjct: 142 GGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 30/125 (24%), Positives = 57/125 (45%), Gaps = 15/125 (12%)
Query: 366 IEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVV 425
+ + L +S ++ + + E+ I+ + ++ ++GR +
Sbjct: 294 LRRLVASFTTLTQSF-----ASMDRVFQLIDEDYDIKNGVGAQPIE---IKQGR-----I 340
Query: 426 TIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L+
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400
Query: 484 GEHNV 488
HN+
Sbjct: 401 DGHNI 405
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.7 bits (130), Expect = 9e-08
Identities = 54/217 (24%), Positives = 92/217 (42%), Gaps = 64/217 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 340 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----E 197
S +I + Q+ F S TV+E I G+ E
Sbjct: 400 IDGHNIKDFLTGSLRNQIGLVQQDNILF----SDTVKE----------NILLGRPTATDE 445
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257
V +A A+ N + L P+ G+ + G+R V
Sbjct: 446 EVVEA------------------------AKMANAHDF---IMNL-PQ-GYDTEVGERGV 476
Query: 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
S G + R+S+ +I L +P +L+LDE T+ LDL++
Sbjct: 477 -KLSGGQKQRLSIARIFLNNPPILILDEATSALDLES 512
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 6e-10
Identities = 19/108 (17%), Positives = 44/108 (40%), Gaps = 18/108 (16%)
Query: 386 SSAEKKLERLQEEEQIE---KPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLLF 440
++ + + E + + +R ++ K++ F Y+ ++
Sbjct: 313 AACQTLFGLMDLETERDNGKYEAERVNGEVDV-------------KDVTFTYQGKEKPAL 359
Query: 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
+ + +I +G+ A++G +G GKST+ L G + L H+V
Sbjct: 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDV 407
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 4e-08
Identities = 55/257 (21%), Positives = 109/257 (42%), Gaps = 59/257 (22%)
Query: 57 KSIAKAQSDVESLFSSSADEFE--NKKYSNKQSNTGASSISSGVKLENISKSYKG--VTV 112
K++ S+ + ++ F + + A ++ V +++++ +Y+G
Sbjct: 299 KALTSVTSEFQRGMAACQTLFGLMDLETERDNGKYEAERVNGEVDVKDVTFTYQGKEKPA 358
Query: 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKS-NMK 162
L V++ + +G+ V LVG +G+GK+T + + DSG++ K +
Sbjct: 359 LSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRH 418
Query: 163 IAFLSQE---FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDE 219
A +SQ F + T+ A+ E E E++++A A E
Sbjct: 419 FALVSQNVHLF----NDTIANNI--AYAAEGEYT--REQIEQAARQA---------HAME 461
Query: 220 F--DLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
F ++ Q LDT +G ++G L S G + R+++ + LL+D
Sbjct: 462 FIENMPQ------GLDT----------VIG---ENGTSL----SGGQRQRVAIARALLRD 498
Query: 278 PDLLLLDEPTNHLDLDT 294
+L+LDE T+ LD ++
Sbjct: 499 APVLILDEATSALDTES 515
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 59.5 bits (145), Expect = 6e-10
Identities = 25/124 (20%), Positives = 50/124 (40%), Gaps = 21/124 (16%)
Query: 373 INRLGAGANSGRAS--SAEKKLERLQEEEQIE-----KPFQRKQMKIRFPERGRSGRSVV 425
+ G E + L+EE +++ P + ++ +I F
Sbjct: 8 HHHSSGLVPRGSHMFIDMENMFDLLKEETEVKDLPGAGPLRFQKGRIEF----------- 56
Query: 426 TIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
+N+ F Y R + T+ G+ A++GP+G GKST+L+L+ G + +
Sbjct: 57 --ENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRID 114
Query: 485 EHNV 488
++
Sbjct: 115 GQDI 118
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 6e-07
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
++ EN+ SY G L+DV++ V G+ + LVG +GAGK+T LR++ + SG +
Sbjct: 54 IEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 60.3 bits (147), Expect = 9e-10
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 18/109 (16%)
Query: 385 ASSAEKKLERLQEEEQI---EKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYE--DRLL 439
++ + L E++ ++ R + F +N+ F Y +
Sbjct: 312 MAACQTLFAILDSEQEKDEGKRVIDRATGDLEF-------------RNVTFTYPGREVPA 358
Query: 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
NL I G+ A++G +G GKST+ LI G +L+ H++
Sbjct: 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDL 407
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 47/218 (21%), Positives = 90/218 (41%), Gaps = 65/218 (29%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G++
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 401
Query: 155 --------IKAKS-NMKIAFLSQE---FEVSMSRTVREEFMSAFKEEMEIA-GKL----- 196
S ++A +SQ F + TV IA +
Sbjct: 402 MDGHDLREYTLASLRNQVALVSQNVHLF----NDTVAN----------NIAYARTEEYSR 447
Query: 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256
E++++A A +F ++K+ G G+
Sbjct: 448 EQIEEAARMA---------YAMDF------------------INKM-DN-GLDTIIGENG 478
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT 294
V S G + R+++ + LL+D +L+LDE T+ LD ++
Sbjct: 479 V-LLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 58.3 bits (142), Expect = 1e-09
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 425 VTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y + + T+ G+ TA++GPNG GKST+ L+ L +P GG+V
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV 76
Query: 482 LLGEHNV 488
LL +
Sbjct: 77 LLDGEPL 83
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 6e-08
Identities = 47/219 (21%), Positives = 84/219 (38%), Gaps = 72/219 (32%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE---EPDS 151
VK +++S +Y V VL+ +T+ + G+ LVG NG+GK+T + A + +P
Sbjct: 17 VKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKST---VAALLQNLYQPTG 73
Query: 152 GNV------IKAKSNMK-----IAFLSQE---FEVSMSRTVRE-----EFMSAFKEEMEI 192
G V + + + +A + QE F R+ RE + EE+
Sbjct: 74 GKVLLDGEPLV-QYDHHYLHTQVAAVGQEPLLF----GRSFRENIAYGLTRTPTMEEITA 128
Query: 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252
+ A + +S P+ G+ +
Sbjct: 129 VAME------------------------------SGAHDF------ISGF-PQ-GYDTEV 150
Query: 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD 291
G+ S G + ++L + L++ P LL+LD T+ LD
Sbjct: 151 GETGN-QLSGGQRQAVALARALIRKPRLLILDNATSALD 188
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 1e-09
Identities = 21/45 (46%), Positives = 29/45 (64%)
Query: 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
NL I+ GE +I+GP+G GKST+L +I L+KP GEV +
Sbjct: 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKT 69
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 55.2 bits (134), Expect = 1e-08
Identities = 63/247 (25%), Positives = 105/247 (42%), Gaps = 70/247 (28%)
Query: 98 VKLENISKSYK----GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG- 152
VKL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 153 ------NVIKAKS-------NMKIAFLSQEFEVSMSRTVRE--EFMSAFKEEMEIAGKLE 197
KI F+ Q+F + T E E FK ++G+ E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGE-E 120
Query: 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDGDRL 256
R ++ALE L +L +R + P +L
Sbjct: 121 RRKRALE-----------CLKMAELEER-------------FANHKPNQL---------- 146
Query: 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD-------LDTIEWLEGYLGKQDVPM 309
S G Q R+++ + L +P ++L D+PT LD + ++ L GK +
Sbjct: 147 ----SGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKT---V 199
Query: 310 VIISHDR 316
V+++HD
Sbjct: 200 VVVTHDI 206
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.9 bits (133), Expect = 1e-08
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 7/91 (7%)
Query: 93 SISSG-VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149
S+++ V +EN++ + G VLKD+ +++++G+ + + G GAGKT+ L +I G+ EP
Sbjct: 1 SLTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEP 60
Query: 150 DSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180
G + K + +I+F SQ + M T++E
Sbjct: 61 SEGKI---KHSGRISFCSQFSWI-MPGTIKE 87
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 1e-08
Identities = 21/57 (36%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG 478
V ++N+ +E+ N IERG+ A+ G G GK++LL +IMG LE G
Sbjct: 7 VVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
Query: 425 VTIKNLEFGYE---DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI 470
+ ++ F Y + N I G A++G G GKST+ KL+
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 4e-07
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Query: 87 SNTGASSISSG-VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRI 142
S T ++ +++ SY LK + + + G LVG G+GK+T ++
Sbjct: 6 SLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKL 65
Query: 143 I 143
+
Sbjct: 66 L 66
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 425 VTIKNLEFGYEDRLLF--NRANLTIERGEKTAIIGPNGCGKSTLLKLIMG-LEKPRG 478
+T++N F + N +I G A++G GCGKS+LL ++ ++K G
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 98 VKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ + N + ++ L +T+ + +G V +VG G GK++ L + + + G+V
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV- 62
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREE--FMSAFKEEMEIAGKLERVQKA 202
+A++ Q+ + + ++RE F +E V +A
Sbjct: 63 --AIKGSVAYVPQQAWI-QNDSLRENILFGCQLEEP-----YYRSVIQA 103
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 6e-08
Identities = 32/123 (26%), Positives = 59/123 (47%), Gaps = 10/123 (8%)
Query: 62 AQSDVE----SLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVT 117
+ ++V + F +K +N S+ + N S VLKD+
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGT--PVLKDIN 58
Query: 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177
+++++G+ + + G GAGKT+ L +I G+ EP G + K + +I+F SQ + M T
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI---KHSGRISFCSQNSWI-MPGT 114
Query: 178 VRE 180
++E
Sbjct: 115 IKE 117
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 2e-07
Identities = 25/97 (25%), Positives = 42/97 (43%), Gaps = 3/97 (3%)
Query: 386 SSAEKKLERLQEE-EQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444
S+ E +E + E+ K + + +G ++ N L N
Sbjct: 1 STTEVVMENVTAFWEEGFGELFEKAKQNNNNRKTSNGDDSLSFSNFSLLGTPVL--KDIN 58
Query: 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
IERG+ A+ G G GK++LL +IMG +P G++
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKI 95
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 3e-07
Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 12/180 (6%)
Query: 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQR 225
+ + + T ++ +E+V+K A + + + +
Sbjct: 157 VREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSK--IGELASEIFA 214
Query: 226 KAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM------RMSLGKILLQDPD 279
+ + + + L + +R + S G ++ R+++ L +
Sbjct: 215 EFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEIS 274
Query: 280 LLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI-ISHDRAFLDQLCTKI-VETEMGVSR 335
LL+LDEPT +LD + L + + + +P VI +SHD D I + E G S+
Sbjct: 275 LLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLENGSSK 334
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 3e-06
Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 14/171 (8%)
Query: 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238
R + MS ++E E K + L +++ L +K D
Sbjct: 196 RLKEMSNLEKEKEKLTKFVEYLDKVRRIFGRNGFQAYLREKYVPLIQKYLNEAFSEFDLP 255
Query: 239 VSKL----MPELGFTADDGDRLVASFSSGWQMRMSLG-------KILLQDPDLLLLDEPT 287
S + E+ A +G + + S G Q+ ++L ++ + ++LDEPT
Sbjct: 256 YSFVELTKDFEVRVHAPNGVLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPT 315
Query: 288 NHLDLDTIEWLEGYLGK-QDVP-MVIISHDRAFLDQLCTKI-VETEMGVSR 335
+LD + L K + +P M+II+H R D I V+ + VS+
Sbjct: 316 VYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVKKDGNVSK 366
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 555 | |||
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.97 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.97 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.97 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.96 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.94 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.94 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.94 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.93 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.93 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.93 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.93 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.93 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.93 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.93 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.93 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.93 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.93 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.93 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.93 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.93 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.93 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.92 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.92 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.92 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.92 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.92 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.92 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.92 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.92 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.91 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.91 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.91 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.91 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.91 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.91 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.91 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.91 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.91 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.91 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.9 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.9 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.9 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.9 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.9 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.89 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.88 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.88 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.87 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.87 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.87 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.87 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.87 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.86 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.86 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.86 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.86 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.86 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.86 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.85 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.85 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.85 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.85 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.83 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.83 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.83 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.81 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.81 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.8 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.8 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.79 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.79 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.79 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.78 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.78 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.76 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.76 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.76 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.76 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.72 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.71 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.69 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.69 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.68 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.68 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.67 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.67 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.66 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.65 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.63 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.58 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.56 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.56 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.55 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.54 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.53 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.51 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.51 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.5 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.45 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.45 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.45 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.42 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.42 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.42 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.41 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.4 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.37 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.37 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.37 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.35 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.35 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.35 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.35 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.35 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.35 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.34 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.31 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.31 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.3 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.3 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.3 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.28 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.28 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.24 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.24 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.22 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.22 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.21 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.19 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.19 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.18 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.15 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.15 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.13 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.12 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.1 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.09 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.08 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.07 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.07 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.06 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.05 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.05 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.04 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.02 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.02 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.02 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.0 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.0 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.0 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.95 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.93 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.91 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.9 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.9 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.88 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 98.88 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.85 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.81 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.78 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.78 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.78 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.78 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.77 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.76 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.76 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.76 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.75 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.75 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.73 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.73 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 98.73 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.71 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.71 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.71 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.7 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.68 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 98.67 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.67 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.66 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 98.65 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.59 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.58 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.58 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.56 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.56 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.55 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.55 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.53 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.51 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.48 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.48 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.46 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.46 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.45 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.44 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.4 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.4 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.4 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.39 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.39 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.38 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.37 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.37 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.36 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.36 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.33 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.33 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.33 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.31 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.29 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.28 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.28 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.28 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.27 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.26 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.26 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 98.25 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.24 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.22 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.22 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 98.21 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.2 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.19 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.18 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.18 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.13 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.11 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.11 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.1 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.09 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.08 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.08 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.08 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.07 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.06 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.05 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.05 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.04 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.03 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.03 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.03 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.02 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.01 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.0 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.99 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 97.96 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.93 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.93 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.92 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.9 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.88 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.86 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 97.86 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.86 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.85 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.85 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.85 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.84 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.84 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.83 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.82 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.82 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.81 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.79 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.78 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.77 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.77 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.75 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.75 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.75 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.74 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.74 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 97.71 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.71 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.71 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.69 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.69 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.68 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.67 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.66 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.65 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.64 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.57 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.57 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.56 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.55 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 97.52 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.5 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.49 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.49 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.47 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.42 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.41 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.41 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.39 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.37 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.37 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.37 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 97.36 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.35 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.34 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.33 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.3 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.3 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.28 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 97.24 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.23 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.22 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.21 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.2 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.19 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.19 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.15 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.14 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.14 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.14 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.13 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.12 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.09 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.09 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.08 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.08 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.08 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.06 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.04 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.04 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.04 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 97.03 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.01 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.01 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.01 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.0 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.99 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.98 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.97 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.96 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.96 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.95 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.95 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.94 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.93 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 96.91 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.87 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.87 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.85 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 96.84 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.81 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.8 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 96.8 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.8 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.8 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.79 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.76 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 96.75 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.72 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.68 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 96.67 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.62 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 96.62 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.62 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.59 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.58 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.57 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.57 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 96.57 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.56 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.54 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 96.54 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.54 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.53 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.53 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.51 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.43 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.42 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.36 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.31 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.3 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.27 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.27 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.25 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.25 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 96.24 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 96.24 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.23 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.21 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.2 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.2 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.19 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.19 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.14 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.13 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.05 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.05 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.05 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 96.04 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.04 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.03 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.03 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.0 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.99 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.99 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.98 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.96 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.96 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.95 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.94 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.93 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.92 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.91 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.89 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.87 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.86 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.86 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.82 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.81 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.79 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.78 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.76 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.75 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.74 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.73 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.7 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.7 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.7 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.69 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.68 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.68 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.64 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.63 |
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-62 Score=557.62 Aligned_cols=299 Identities=30% Similarity=0.558 Sum_probs=240.6
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC----CCceEEEEeccc-
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK----SNMKIAFLSQEF- 170 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g----~~~~ig~v~Q~~- 170 (555)
..|...|++++|+++.+|+|+||+|.+|++++|+|+||||||||+|+|+| |+| .| ...+++|++|++
T Consensus 434 ~~L~~~~ls~~yg~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~~~~~~~v~q~~~ 505 (986)
T 2iw3_A 434 EDLCNCEFSLAYGAKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQEECRTVYVEHDID 505 (986)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTTTSCEEETTCCCC
T ss_pred ceeEEeeEEEEECCEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccccceeEEEEccccc
Confidence 34777799999999999999999999999999999999999999999995 222 11 123578999985
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||.+|+.... .+ . ..++.++|+.+||+.
T Consensus 506 ~~~~~ltv~e~l~~~~-------------------------------------------~~--~-~~~v~~~L~~lgL~~ 539 (986)
T 2iw3_A 506 GTHSDTSVLDFVFESG-------------------------------------------VG--T-KEAIKDKLIEFGFTD 539 (986)
T ss_dssp CCCTTSBHHHHHHTTC-------------------------------------------SS--C-HHHHHHHHHHTTCCH
T ss_pred ccccCCcHHHHHHHhh-------------------------------------------cC--H-HHHHHHHHHHcCCCh
Confidence 5567889998874200 00 1 456778899999965
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
...++++.+|||||||||+|||||+.+|+|||||||||+||+.++++|.++|++.|.|||+||||++++..+||+|++|+
T Consensus 540 ~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~~g~tvIivSHdl~~l~~~adrii~L~ 619 (986)
T 2iw3_A 540 EMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNTCGITSITISHDSVFLDNVCEYIINYE 619 (986)
T ss_dssp HHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHCSEEEEEE
T ss_pred hhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 66789999999999999999999999999999999999999999999999998788999999999999999999999999
Q ss_pred CCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccc
Q 008750 331 MGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQM 410 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~ 410 (555)
+|++..+.|+++++....... ..... +. . ...
T Consensus 620 ~G~iv~~~G~~~e~~~~~~~~----------------------~~~~~----------------l~-----~-----~~~ 651 (986)
T 2iw3_A 620 GLKLRKYKGNFTEFVKKCPAA----------------------KAYEE----------------LS-----N-----TDL 651 (986)
T ss_dssp TTEEEEEESCHHHHHHHCGGG----------------------GGSSS----------------TT-----T-----CCC
T ss_pred CCeeecCCCCHHHHHhhhHHH----------------------HHHHh----------------hh-----h-----hhh
Confidence 999877889998775421000 00000 00 0 000
Q ss_pred eeeccCC------CCCCCceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008750 411 KIRFPER------GRSGRSVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (555)
Q Consensus 411 ~~~~~~~------~~~~~~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~ 482 (555)
.+.++.+ ...++++|+++|+++.|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 652 ~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~ 731 (986)
T 2iw3_A 652 EFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731 (986)
T ss_dssp CCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEE
T ss_pred hccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEE
Confidence 1111111 1134678999999999975 5789999999999999999999999999999999999999999999
Q ss_pred ECCceeeeEEEecCC
Q 008750 483 LGEHNVLPNYFEQNQ 497 (555)
Q Consensus 483 ~~~~~~~~~y~~Q~~ 497 (555)
+++ +.+++|++|++
T Consensus 732 ~~~-~~~I~yv~Q~~ 745 (986)
T 2iw3_A 732 THE-NCRIAYIKQHA 745 (986)
T ss_dssp ECT-TCCEEEECHHH
T ss_pred EcC-ccceEeeccch
Confidence 975 45789999974
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-62 Score=534.48 Aligned_cols=358 Identities=24% Similarity=0.307 Sum_probs=266.1
Q ss_pred EEE-EeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EEcCCC------
Q 008750 98 VKL-ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAKSN------ 160 (555)
Q Consensus 98 i~l-~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~g~~------ 160 (555)
.++ +||+|+|++. .+|+||| +|++||++||||+||||||||+|+|+|+++|++|++ .++|..
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 466 6999999876 4999999 999999999999999999999999999999999995 234422
Q ss_pred ------ceEEEEecccccCcC---ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcC
Q 008750 161 ------MKIAFLSQEFEVSMS---RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVN 231 (555)
Q Consensus 161 ------~~ig~v~Q~~~~~~~---~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (555)
..+++++|+....+. .|+.+++..
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~----------------------------------------------- 132 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKK----------------------------------------------- 132 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHH-----------------------------------------------
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhh-----------------------------------------------
Confidence 347888887544322 366554410
Q ss_pred cccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 232 LDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 232 ~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.....++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|++ .|.|
T Consensus 133 -~~~~~~~~~~l~~lgl~-~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~t 210 (538)
T 1yqt_A 133 -ADETGKLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKS 210 (538)
T ss_dssp -HCSSSCHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCE
T ss_pred -hhHHHHHHHHHHHcCCC-hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCE
Confidence 00113466788999996 467999999999999999999999999999999999999999999988887743 5899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeE--eeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRAS 386 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~--~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (555)
||+||||++++..+||+|++|+++.. ..+...+..-. .+ ...........
T Consensus 211 vi~vsHd~~~~~~~~dri~vl~~~~~~~~~~~~~~~~~~-------------------~~---~~~~~~~~~~~------ 262 (538)
T 1yqt_A 211 VLVVEHDLAVLDYLSDIIHVVYGEPGVYGIFSQPKGTRN-------------------GI---NEFLRGYLKDE------ 262 (538)
T ss_dssp EEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH-------------------HH---HHHHHTEETTT------
T ss_pred EEEEeCCHHHHHHhCCEEEEEcCcccccccccchhhHHH-------------------HH---HHHhhhccchh------
Confidence 99999999999999999999986421 12233332100 00 00000000000
Q ss_pred HHHHHHHHHHHhhhhcCccccccceeeccCCC--CCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008750 387 SAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (555)
Q Consensus 387 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKS 464 (555)
. .... .....+.++... ..++++++++|+++.|++. .|+.+||+|++||+++|+||||||||
T Consensus 263 ------------~-~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKS 326 (538)
T 1yqt_A 263 ------------N-VRFR--PYEIKFTKTGERVEIERETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKT 326 (538)
T ss_dssp ------------T-EECS--SSCCCCCCSSGGGSSCCCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred ------------h-hccc--ccccccccCCcccccCCCeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHH
Confidence 0 0000 000111111111 1356789999999999764 68999999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhh-ccc-CcHHHHHHHHhhCCCChhhhccccC
Q 008750 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKADMLDRKVS 542 (555)
Q Consensus 465 TLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~~~~~~~~~~~~ 542 (555)
||+|+|+|+++|++|+|.+. ..++|++|++. ..+..||.+++... ... .....+..+|..+++. +..++++.
T Consensus 327 TLlk~l~Gl~~p~~G~i~~~---~~i~~v~Q~~~--~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~ 400 (538)
T 1yqt_A 327 TFVKMLAGVEEPTEGKIEWD---LTVAYKPQYIK--ADYEGTVYELLSKIDASKLNSNFYKTELLKPLGII-DLYDREVN 400 (538)
T ss_dssp HHHHHHHTSSCCSBCCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCG-GGTTSBGG
T ss_pred HHHHHHhCCCCCCCeEEEEC---ceEEEEecCCc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCh-hhhcCChh
Confidence 99999999999999999763 46899999863 34678998887643 111 1245678899999995 67899999
Q ss_pred CCChhHHhchhcC
Q 008750 543 LLSGGEKVNQTLV 555 (555)
Q Consensus 543 ~LSGGek~Rv~La 555 (555)
.|||||||||+||
T Consensus 401 ~LSGGe~qrv~lA 413 (538)
T 1yqt_A 401 ELSGGELQRVAIA 413 (538)
T ss_dssp GCCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH
Confidence 9999999999986
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-62 Score=538.70 Aligned_cols=359 Identities=24% Similarity=0.320 Sum_probs=268.6
Q ss_pred cEEE--------EeEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE---------EEcC
Q 008750 97 GVKL--------ENISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV---------IKAK 158 (555)
Q Consensus 97 ~i~l--------~nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I---------~~~g 158 (555)
.|++ +||+++|++. .+|+|+| +|++||++||+|+||||||||+|+|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 8999999876 4999999 999999999999999999999999999999999995 2344
Q ss_pred CC------------ceEEEEecccccCc---CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHH
Q 008750 159 SN------------MKIAFLSQEFEVSM---SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLL 223 (555)
Q Consensus 159 ~~------------~~ig~v~Q~~~~~~---~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (555)
.. ..+++++|.....+ ..||.+++...
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~-------------------------------------- 203 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV-------------------------------------- 203 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT--------------------------------------
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh--------------------------------------
Confidence 22 24778888754322 23777664210
Q ss_pred HHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 224 QRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
....++.++++.+||. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|+
T Consensus 204 ----------~~~~~~~~~L~~lgL~-~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~ 272 (607)
T 3bk7_A 204 ----------DEVGKFEEVVKELELE-NVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIR 272 (607)
T ss_dssp ----------CCSSCHHHHHHHTTCT-TGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHcCCC-chhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH
Confidence 0113456788899996 56799999999999999999999999999999999999999999988888775
Q ss_pred C---CCceEEEEecCHHHHHhhcceeEEecCCeE--eeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 008750 304 K---QDVPMVIISHDRAFLDQLCTKIVETEMGVS--RTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGA 378 (555)
Q Consensus 304 ~---~~~tvIiiSHd~~~l~~~~dri~~l~~G~~--~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (555)
+ .|.|||+||||++++..+||+|++|+++.. -.+...+.... . ..........
T Consensus 273 ~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~~~g~~~~~~~~~~-------------------~---i~~~~~~~~~ 330 (607)
T 3bk7_A 273 RLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRN-------------------G---INEFLQGYLK 330 (607)
T ss_dssp HHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTTTEEEECCCEEHHH-------------------H---HHHHHHTEET
T ss_pred HHHhcCCEEEEEecChHHHHhhCCEEEEECCCccccceeccchhHHH-------------------H---HHHHHhhcch
Confidence 3 489999999999999999999999986421 11222222100 0 0000000000
Q ss_pred CCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCC--CCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEE
Q 008750 379 GANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG--RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAII 456 (555)
Q Consensus 379 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~ 456 (555)
. +. .. .......+.+.... ..++++++++|+++.|++. .|+.+||+|++||+++|+
T Consensus 331 ~------------------~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~ 388 (607)
T 3bk7_A 331 D------------------EN-VR--FRPYEIRFTKLSERVDVERETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIV 388 (607)
T ss_dssp T------------------TT-EE--CCSSCCCCCCSTTSCCCCCCEEEEECCEEEECSSC-EEEECCEEEETTCEEEEE
T ss_pred h------------------hh-hh--ccccccccccCCCcccccCceEEEEeceEEEecce-EEEecccccCCCCEEEEE
Confidence 0 00 00 00001111111111 1346789999999999764 689999999999999999
Q ss_pred CCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhh-ccc-CcHHHHHHHHhhCCCCh
Q 008750 457 GPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA-AED-WRIDDIKGLLGRCNFKA 534 (555)
Q Consensus 457 G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~-~~~-~~~~~~~~~L~~~~~~~ 534 (555)
||||||||||+|+|+|+++|++|+|.+. ..++|++|++. +.+..||.+++... ... .....+..+|..+++.
T Consensus 389 G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~~l~- 462 (607)
T 3bk7_A 389 GPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIK--AEYEGTVYELLSKIDSSKLNSNFYKTELLKPLGII- 462 (607)
T ss_dssp CCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCC--CCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHHTCT-
T ss_pred CCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCcc--CCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCCc-
Confidence 9999999999999999999999999773 46899999853 45678998887653 111 1234578899999996
Q ss_pred hhhccccCCCChhHHhchhcC
Q 008750 535 DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 535 ~~~~~~~~~LSGGek~Rv~La 555 (555)
+..++++.+|||||||||+||
T Consensus 463 ~~~~~~~~~LSGGe~QRv~iA 483 (607)
T 3bk7_A 463 DLYDRNVEDLSGGELQRVAIA 483 (607)
T ss_dssp TTTTSBGGGCCHHHHHHHHHH
T ss_pred hHhcCChhhCCHHHHHHHHHH
Confidence 678999999999999999986
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-59 Score=558.71 Aligned_cols=258 Identities=24% Similarity=0.356 Sum_probs=188.9
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~ 125 (555)
+......+...+.+..+.+++++....+++......... ......+.|+++||+|+|++ .++|+||||+|++||+
T Consensus 341 ~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~--~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~ 418 (1284)
T 3g5u_A 341 VGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGH--KPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQT 418 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCSSCCSSCC--CCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCcccccCC--CCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCE
Confidence 334444556677888888888887654432211100000 01123456999999999964 3699999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||||+||||||||+++|+|+++|++|+|.++|.+. .||||+|++.++ ..||+||+..+.... .
T Consensus 419 ~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~g~~~~-----~ 492 (1284)
T 3g5u_A 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLF-ATTIAENIRYGREDV-----T 492 (1284)
T ss_dssp EEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCC-SSCHHHHHHHHCSSC-----C
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccC-CccHHHHHhcCCCCC-----C
Confidence 999999999999999999999999999999998653 499999999874 569999997542100 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+.+...+. .. .....+..+.. |++ ........+|||||||||+|||||+
T Consensus 493 ~~~~~~~~~------------------------~~---~~~~~i~~l~~--g~~-t~~~~~g~~LSgGq~QriaiARal~ 542 (1284)
T 3g5u_A 493 MDEIEKAVK------------------------EA---NAYDFIMKLPH--QFD-TLVGERGAQLSGGQKQRIAIARALV 542 (1284)
T ss_dssp HHHHHHHHH------------------------HT---TCHHHHHHSTT--GGG-CCCSSSSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------Hh---CcHHHHHhccc--ccc-ccccCCCCccCHHHHHHHHHHHHHh
Confidence 000000000 00 01111222111 222 1234556799999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|+|||||||||+||+.+..++.+.++. .|+|+|+||||++++.. ||+|++|++|++ ...|+++++..
T Consensus 543 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i-~~~g~~~~l~~ 613 (1284)
T 3g5u_A 543 RNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVI-VEQGNHDELMR 613 (1284)
T ss_dssp HCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCC-CCEECHHHHHH
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999999888753 58999999999999976 999999999986 56788877654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-57 Score=540.25 Aligned_cols=257 Identities=21% Similarity=0.316 Sum_probs=188.9
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCC
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGE 124 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge 124 (555)
.+......+..++.+..+.+++++..+.++......... .......+.|+++||+|+|++ .++|+||||+|++|+
T Consensus 368 ~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~--~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~ 445 (1321)
T 4f4c_A 368 ALGLAGPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAG--RKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQ 445 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCC--CCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccc--ccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCc
Confidence 445555556678888888888887765443222111111 111133456999999999963 579999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
++||||++|||||||+++|.|+++|++|+|.++|.+. +|+||+|++.+ |+.||+||+..+....
T Consensus 446 ~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~L-f~~TI~eNI~~g~~~~----- 519 (1321)
T 4f4c_A 446 TVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPAL-FNCTIEENISLGKEGI----- 519 (1321)
T ss_dssp EEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCC-CSEEHHHHHHTTCTTC-----
T ss_pred EEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCccee-eCCchhHHHhhhcccc-----
Confidence 9999999999999999999999999999999999653 59999999988 7899999997542110
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
..+++.+++.. ..+...+..+-+ |++....++ -.+||||||||++|||||
T Consensus 520 ~~~~v~~a~~~---------------------------a~l~~~i~~lp~--G~~T~vGe~-G~~LSGGQkQRiaiARAl 569 (1321)
T 4f4c_A 520 TREEMVAACKM---------------------------ANAEKFIKTLPN--GYNTLVGDR-GTQLSGGQKQRIAIARAL 569 (1321)
T ss_dssp CHHHHHHHHHH---------------------------TTCHHHHHHSTT--TTSSEESSS-SCCCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHH---------------------------ccchhHHHcCCC--CCccEecCC-CCCCCHHHHHHHHHHHHH
Confidence 00001111110 011111222111 333333333 358999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
+.+|+|||||||||+||+.++..+.+.|.+ .|+|+|+|||+++.+. .||+|++|++|+++ ..|++++.
T Consensus 570 ~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i~-~aD~Iivl~~G~iv-e~Gth~eL 639 (1321)
T 4f4c_A 570 VRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTIR-NADLIISCKNGQVV-EVGDHRAL 639 (1321)
T ss_dssp TTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTTT-TCSEEEEEETTEEE-EEECHHHH
T ss_pred ccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHHH-hCCEEEEeeCCeee-ccCCHHHH
Confidence 999999999999999999998888888764 5899999999999996 59999999999974 45665554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=490.86 Aligned_cols=356 Identities=23% Similarity=0.288 Sum_probs=252.4
Q ss_pred EeEEEEeCCceeeeeeeEEEE-CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE-----------EEcCCC--------
Q 008750 101 ENISKSYKGVTVLKDVTWEVK-KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV-----------IKAKSN-------- 160 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~-~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I-----------~~~g~~-------- 160 (555)
++++.+||.. -|+-..|.+. +||++|||||||||||||+|+|+|+++|++|+| .+.|..
T Consensus 3 ~~~~~~~~~~-~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 3 GEVIHRYKVN-GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CCEEEESSTT-SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCCceecCCC-ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 3567889643 2444455544 899999999999999999999999999999998 344432
Q ss_pred ----ceEEEEecccccC---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 161 ----MKIAFLSQEFEVS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 161 ----~~ig~v~Q~~~~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
..+....|..... +..++.+++.. .
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~------------------------------------------------~ 113 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTK------------------------------------------------I 113 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHH------------------------------------------------H
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhc------------------------------------------------c
Confidence 1234444433221 22344433210 0
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVI 311 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIi 311 (555)
....++.++++.+|+. ...++++.+|||||||||+|||||+.+|+|||||||||+||+.++.++.++|++ .|.|||+
T Consensus 114 ~~~~~~~~~l~~l~l~-~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~ 192 (538)
T 3ozx_A 114 DERGKKDEVKELLNMT-NLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIV 192 (538)
T ss_dssp CCSSCHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEE
T ss_pred hhHHHHHHHHHHcCCc-hhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0112456678888985 567999999999999999999999999999999999999999999998887753 3899999
Q ss_pred EecCHHHHHhhcceeEEecCCeEe--eccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSR--TYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAE 389 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~--~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (555)
||||++++..+||+|++|++|... .+...+..- . . ....+.........
T Consensus 193 vsHdl~~~~~~~d~i~vl~~~~~~~g~~~~~~~~~----~-----~-------------~~~~~~g~~~~~~~------- 243 (538)
T 3ozx_A 193 VDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAAR----V-----G-------------INNFLKGYLPAENM------- 243 (538)
T ss_dssp ECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH----H-----H-------------HHHHHHTEETTTTE-------
T ss_pred EEeChHHHHhhCCEEEEecCCcccccccchhhhHH----H-----H-------------HHHHHhhhchhhhh-------
Confidence 999999999999999999865321 112222110 0 0 00011110000000
Q ss_pred HHHHHHHHhhhhcCccccccceeeccCC-----CCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHH
Q 008750 390 KKLERLQEEEQIEKPFQRKQMKIRFPER-----GRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKS 464 (555)
Q Consensus 390 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKS 464 (555)
.. .+ ....+..... ...++++++++++++.|++. .|..+||+|++||+++|+||||||||
T Consensus 244 ----------~~-r~---~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKS 308 (538)
T 3ozx_A 244 ----------KI-RP---DEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKT 308 (538)
T ss_dssp ----------EC-SS---SCCCCSCC----------CCEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHH
T ss_pred ----------hc-cc---hhhhccccccccccccccccceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHH
Confidence 00 00 0000000000 11346789999999999874 57888999999999999999999999
Q ss_pred HHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhccc---CcHHHHHHHHhhCCCChhhhcccc
Q 008750 465 TLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAED---WRIDDIKGLLGRCNFKADMLDRKV 541 (555)
Q Consensus 465 TLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~~~~~~L~~~~~~~~~~~~~~ 541 (555)
||+++|+|+++|++|+|.+.+. .++|++|+.. .....||.+++...... .....+..+|..+++. +..++++
T Consensus 309 TLl~~l~Gl~~p~~G~i~~~~~--~i~~~~q~~~--~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~ 383 (538)
T 3ozx_A 309 TFARILVGEITADEGSVTPEKQ--ILSYKPQRIF--PNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH-RLLESNV 383 (538)
T ss_dssp HHHHHHTTSSCCSBCCEESSCC--CEEEECSSCC--CCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGG-GCTTSBG
T ss_pred HHHHHHhCCCCCCCcEEEECCe--eeEeechhcc--cccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCH-HHhcCCh
Confidence 9999999999999999988754 4689999753 34578999998764322 1224567889999995 5789999
Q ss_pred CCCChhHHhchhcC
Q 008750 542 SLLSGGEKVNQTLV 555 (555)
Q Consensus 542 ~~LSGGek~Rv~La 555 (555)
.+|||||||||+||
T Consensus 384 ~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 384 NDLSGGELQKLYIA 397 (538)
T ss_dssp GGCCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHH
Confidence 99999999999986
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-55 Score=482.63 Aligned_cols=380 Identities=21% Similarity=0.318 Sum_probs=243.2
Q ss_pred eEEEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-eEEEEecccccCcCccHH
Q 008750 102 NISKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 102 nls~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-~ig~v~Q~~~~~~~~tv~ 179 (555)
|++++|+.. ..|++++ .+++||++||+||||||||||+|+|+|+++|++|+|....... .++++ ....+.
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~-------~g~~~~ 153 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYF-------RGSELQ 153 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHT-------TTSTHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhhee-------cChhhh
Confidence 578999754 4677777 6999999999999999999999999999999999873111000 00000 000111
Q ss_pred HHHHHhhHHHHHH---HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 180 EEFMSAFKEEMEI---AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 180 e~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
..+.......... ......+.. ........+... .. ........++.++++.+|+. ...+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~v~~~-------l~----~~~~~~~~~~~~~l~~~gl~-~~~~~~ 218 (608)
T 3j16_B 154 NYFTKMLEDDIKAIIKPQYVDNIPR---AIKGPVQKVGEL-------LK----LRMEKSPEDVKRYIKILQLE-NVLKRD 218 (608)
T ss_dssp HHHHHHHHTSCCCEEECCCTTTHHH---HCSSSSSHHHHH-------HH----HHCCSCHHHHHHHHHHHTCT-GGGGSC
T ss_pred hhhhHHHHHhhhhhhchhhhhhhhh---hhcchhhHHHHH-------Hh----hhhhhHHHHHHHHHHHcCCc-chhCCC
Confidence 1000000000000 000000000 000000000000 00 01122346788899999996 567999
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
+.+|||||||||+|||||+.+|++|||||||++||+.++.++.++++ +.|.|||+||||++++..+||+|++|++|.
T Consensus 219 ~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~ 298 (608)
T 3j16_B 219 IEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVP 298 (608)
T ss_dssp TTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCT
T ss_pred hHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999999999999999999999999999999999998888764 458999999999999999999999998764
Q ss_pred Eee--ccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccce
Q 008750 334 SRT--YEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMK 411 (555)
Q Consensus 334 ~~~--~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~ 411 (555)
... +...++. ++ . ......+.... +. . .+......
T Consensus 299 ~~~~~~~~~~~~----~~-----~-------------~~~~~~~~~~~------------------~~-~--~~~~~~~~ 335 (608)
T 3j16_B 299 SVYGVVTLPASV----RE-----G-------------INIFLDGHIPA------------------EN-L--RFRTEALQ 335 (608)
T ss_dssp TTEEEECCCEEH----HH-----H-------------HHHHHHTEETT------------------TT-E--ECSSSCCC
T ss_pred cccceecCchhH----HH-----H-------------HHHhhccccch------------------hh-h--cccccccc
Confidence 210 1111110 00 0 00000000000 00 0 00000011
Q ss_pred eeccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecC-----CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 412 IRFPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERG-----EKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 412 ~~~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~G-----e~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
+... .......+...++.+.|++ ...+++++|++.+| |+++|+||||||||||+++|+|+++|++|+..
T Consensus 336 ~~~~--~~~~~~~~~~~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~--- 410 (608)
T 3j16_B 336 FRIA--DATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI--- 410 (608)
T ss_dssp CCCS--SSSCCCCCCSSSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---
T ss_pred cccc--ccccceeeeccceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---
Confidence 1110 0011112223567788876 35789999999999 88999999999999999999999999999742
Q ss_pred ceeeeEEEecCCccCCCCCCCHHHHHHhhccc--CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 486 HNVLPNYFEQNQAEALDLDKTVLETVAEAAED--WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 486 ~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~--~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
....++|++|+.. .....||.+++...... .....+..+|..+++. +..++++.+|||||||||+||
T Consensus 411 ~~~~i~~~~q~~~--~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~-~~~~~~~~~LSGGqkQRv~iA 479 (608)
T 3j16_B 411 PKLNVSMKPQKIA--PKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRID-DIIDQEVQHLSGGELQRVAIV 479 (608)
T ss_dssp CSCCEEEECSSCC--CCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTST-TTSSSBSSSCCHHHHHHHHHH
T ss_pred cCCcEEEeccccc--ccCCccHHHHHHHHhhcccccHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 2345789999853 33456999988653221 2344567889999996 578999999999999999986
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-52 Score=473.38 Aligned_cols=276 Identities=18% Similarity=0.274 Sum_probs=172.6
Q ss_pred CceeeeeeeEEEECCCEEEEEcCCCccHHHHH---------------------HHHHcCCCCCceE-------EEEcCCC
Q 008750 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQL---------------------RIIAGQEEPDSGN-------VIKAKSN 160 (555)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLl---------------------k~i~G~~~p~~G~-------I~~~g~~ 160 (555)
...+|+||||+|++||++|||||||||||||+ +++.|+..|+.|. |.+++..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCch
Confidence 45699999999999999999999999999998 9999999998554 4444432
Q ss_pred ------ceEEEEecccccC-------------------cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHH
Q 008750 161 ------MKIAFLSQEFEVS-------------------MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215 (555)
Q Consensus 161 ------~~ig~v~Q~~~~~-------------------~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (555)
..+++++|.+.+. +.+||.+|+...... .... .+
T Consensus 110 ~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~--~~~~-------------~~------ 168 (670)
T 3ux8_A 110 TSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGL--ELTE-------------KE------ 168 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred hhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhcc--ccch-------------hh------
Confidence 2345555543321 234555554321000 0000 00
Q ss_pred HHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHH
Q 008750 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLD 293 (555)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~ 293 (555)
.........++..+ ..+++.+||.....++++.+|||||||||+|||||+.+|+ +|||||||++||+.
T Consensus 169 ---------~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 169 ---------AQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -------------------CHHH-HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ---------hHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 00000000111122 2468889997656789999999999999999999999998 99999999999999
Q ss_pred HHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHH
Q 008750 294 TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQR 364 (555)
Q Consensus 294 ~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~ 364 (555)
.+.++.++|+ +.|.|||+||||++++. .||+|++| ++|++ ++.|++.++......
T Consensus 239 ~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~-~~d~ii~l~~g~~~~~G~i-~~~g~~~~~~~~~~~-------------- 302 (670)
T 3ux8_A 239 DNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEV-VAAGTPEEVMNDPNS-------------- 302 (670)
T ss_dssp GHHHHHHHHHHHHHTTCEEEEECCCHHHHH-HCSEEEEECSSSGGGCCSE-EEEECHHHHHTCTTC--------------
T ss_pred HHHHHHHHHHHHHHcCCEEEEEeCCHHHHh-hCCEEEEecccccccCCEE-EEecCHHHHhcCchh--------------
Confidence 9999988774 45899999999999886 59999999 77775 567776654321000
Q ss_pred HHHHHHHHHHHhccCCchhhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceE
Q 008750 365 EIEQTKDLINRLGAGANSGRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRAN 444 (555)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vs 444 (555)
. ...+ +.. . ...+... .........+++.+.. ..+++++|
T Consensus 303 ----~---~~~~------------------~~~-~-~~~~~~~--------~~~~~~~~~~~~~~~~-----~~~L~~vs 342 (670)
T 3ux8_A 303 ----L---TGQY------------------LSG-K-KFIPIPA--------ERRRPDGRWLEVVGAR-----EHNLKNVS 342 (670)
T ss_dssp ----H---HHHH------------------HTT-S-SCCCCCS--------SCCCCCSCEEEEEEEC-----STTCCSEE
T ss_pred ----H---HHHH------------------hcc-c-ccccccc--------ccccccccceeecCcc-----ccccccce
Confidence 0 0000 000 0 0000000 0011123445555543 35799999
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
|+|++||+++|+||||||||||+++|+
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence 999999999999999999999998754
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-49 Score=409.29 Aligned_cols=212 Identities=25% Similarity=0.427 Sum_probs=182.7
Q ss_pred CCCccEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------
Q 008750 93 SISSGVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------- 161 (555)
Q Consensus 93 ~~~~~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------- 161 (555)
..+++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 20 ~~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~ 99 (366)
T 3tui_C 20 DDKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESE 99 (366)
T ss_dssp ---CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHH
T ss_pred CCCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHH
Confidence 44568999999999953 4699999999999999999999999999999999999999999999998542
Q ss_pred ------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 162 ------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 162 ------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
.||||||++.+++.+||.+|+..+... ......+.
T Consensus 100 ~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~---------------------------------------~~~~~~~~ 140 (366)
T 3tui_C 100 LTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---------------------------------------DNTPKDEV 140 (366)
T ss_dssp HHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHH---------------------------------------SCCCHHHH
T ss_pred HHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHH
Confidence 599999999998999999998643210 01122344
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEE
Q 008750 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVI 311 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIi 311 (555)
.+++.++|+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++|+ +.|.|||+
T Consensus 141 ~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~ 219 (366)
T 3tui_C 141 KRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILL 219 (366)
T ss_dssp HHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 56788999999996 56799999999999999999999999999999999999999999999888775 35899999
Q ss_pred EecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 312 ISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||||++++.++||||++|++|++ +..|+..+..
T Consensus 220 vTHdl~~~~~~aDrv~vl~~G~i-v~~g~~~ev~ 252 (366)
T 3tui_C 220 ITHEMDVVKRICDCVAVISNGEL-IEQDTVSEVF 252 (366)
T ss_dssp EESCHHHHHHHCSEEEEEETTEE-EECCBHHHHH
T ss_pred EecCHHHHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999999999997 4678776654
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-49 Score=409.68 Aligned_cols=209 Identities=26% Similarity=0.385 Sum_probs=182.3
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------eE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~i 163 (555)
++|+++||+|+|++.++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 3 ~~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 3 AALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred cEEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 369999999999999999999999999999999999999999999999999999999999988532 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|||+|++.+++.+||+||+..+... ......+..+++.+++
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l 123 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGN---------------------------------------GKGRTAQERQRIEAML 123 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTT---------------------------------------SSCCSHHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHH---------------------------------------cCCChHHHHHHHHHHH
Confidence 9999999999999999998654210 0112233456788899
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l 319 (555)
+.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.+ ++.|.|+|+||||++++
T Consensus 124 ~~~gL~-~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea 202 (359)
T 3fvq_A 124 ELTGIS-ELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEA 202 (359)
T ss_dssp HHHTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH
T ss_pred HHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 999996 5789999999999999999999999999999999999999999988877643 45699999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||||++|++|++ ...|+..+.+
T Consensus 203 ~~~aDri~vl~~G~i-~~~g~~~el~ 227 (359)
T 3fvq_A 203 LQYADRIAVMKQGRI-LQTASPHELY 227 (359)
T ss_dssp HHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHCCEEEEEECCEE-EEEeCHHHHH
Confidence 999999999999997 4567766544
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-49 Score=395.39 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=180.3
Q ss_pred ccEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------e
Q 008750 96 SGVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ 162 (555)
++|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 85 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHS
T ss_pred cEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCc
Confidence 46999999999975 4699999999999999999999999999999999999999999999998643 5
Q ss_pred EEEEecccc-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 163 IAFLSQEFE-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 163 ig~v~Q~~~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
||||||++. .++..||.+|+..... . ......+..+++.+
T Consensus 86 ig~v~Q~~~~~~~~~tv~e~l~~~~~-----------------~----------------------~~~~~~~~~~~~~~ 126 (275)
T 3gfo_A 86 IGIVFQDPDNQLFSASVYQDVSFGAV-----------------N----------------------MKLPEDEIRKRVDN 126 (275)
T ss_dssp EEEECSSGGGTCCSSBHHHHHHHHHH-----------------T----------------------SCCCHHHHHHHHHH
T ss_pred EEEEEcCcccccccCcHHHHHHHHHH-----------------H----------------------cCCCHHHHHHHHHH
Confidence 999999974 4467899999864310 0 01122234567888
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
+++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++
T Consensus 127 ~l~~~~L~-~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~ 205 (275)
T 3gfo_A 127 ALKRTGIE-HLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDID 205 (275)
T ss_dssp HHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCS
T ss_pred HHHHcCCc-hhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHH
Confidence 99999995 57799999999999999999999999999999999999999999999888764 24899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++..+||+|++|++|++ ++.|+..++..
T Consensus 206 ~~~~~~drv~~l~~G~i-~~~g~~~~~~~ 233 (275)
T 3gfo_A 206 IVPLYCDNVFVMKEGRV-ILQGNPKEVFA 233 (275)
T ss_dssp SGGGGCSEEEEEETTEE-EEEECHHHHTH
T ss_pred HHHHhCCEEEEEECCEE-EEECCHHHHhc
Confidence 99999999999999997 46788777654
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=389.62 Aligned_cols=211 Identities=24% Similarity=0.407 Sum_probs=180.4
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------e
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------~ 162 (555)
.++|+++||+|+|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .
T Consensus 22 ~~~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~ 101 (263)
T 2olj_A 22 LQMIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREE 101 (263)
T ss_dssp CCSEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHH
T ss_pred hheEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCc
Confidence 3479999999999988899999999999999999999999999999999999999999999998532 4
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||||+|++.+++.+||.||+...... .. ........+++.++
T Consensus 102 i~~v~Q~~~l~~~~tv~e~l~~~~~~--------------~~------------------------~~~~~~~~~~~~~~ 143 (263)
T 2olj_A 102 VGMVFQRFNLFPHMTVLNNITLAPMK--------------VR------------------------KWPREKAEAKAMEL 143 (263)
T ss_dssp EEEECSSCCCCTTSCHHHHHHHHHHH--------------TS------------------------CCCHHHHHHHHHHH
T ss_pred EEEEeCCCcCCCCCCHHHHHHHHHHH--------------Hc------------------------CCCHHHHHHHHHHH
Confidence 99999999888888999998532100 00 00111234567888
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++
T Consensus 144 l~~~~L~-~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~ 222 (263)
T 2olj_A 144 LDKVGLK-DKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFA 222 (263)
T ss_dssp HHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred HHHCCCc-hHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH
Confidence 9999995 567899999999999999999999999999999999999999999999888743 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||+|++|++|++. +.|+..++.
T Consensus 223 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 247 (263)
T 2olj_A 223 REVGDRVLFMDGGYII-EEGKPEDLF 247 (263)
T ss_dssp HHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHhCCEEEEEECCEEE-EECCHHHHH
Confidence 9999999999999974 567766554
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-48 Score=408.17 Aligned_cols=208 Identities=26% Similarity=0.413 Sum_probs=182.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 5899999999999999999999999999999999999999999999999999999999999854 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.||+..+... ......+..+++.++++.+|+
T Consensus 83 ~~~l~p~ltV~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (381)
T 3rlf_A 83 SYALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQL 123 (381)
T ss_dssp TCCCCTTSCHHHHHTHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CCcCCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99999999999998643210 012233456778899999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aD 202 (381)
T 3rlf_A 124 A-HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLAD 202 (381)
T ss_dssp G-GGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCS
T ss_pred c-hhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCC
Confidence 6 57899999999999999999999999999999999999999999988887764 348999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++|++|++. ..|+..+++
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (381)
T 3rlf_A 203 KIVVLDAGRVA-QVGKPLELY 222 (381)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEeCHHHHH
Confidence 99999999974 556665543
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-48 Score=390.11 Aligned_cols=210 Identities=26% Similarity=0.449 Sum_probs=179.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------------
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------------- 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------------- 161 (555)
++|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 369999999999988999999999999999999999999999999999999999999999988432
Q ss_pred ---------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 162 ---------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 162 ---------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
.||||+|++.+++.+||.||+...... .. ....
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~--------------~~------------------------~~~~ 126 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ--------------VL------------------------GLSK 126 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH--------------TT------------------------CCCH
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHH--------------hc------------------------CCCH
Confidence 399999999888889999998532100 00 0011
Q ss_pred ccHHHHHHHHhhhcCCCccc-cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCce
Q 008750 233 DTLDAKVSKLMPELGFTADD-GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVP 308 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~t 308 (555)
.....++.++++.+|+. .. .++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|.|
T Consensus 127 ~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~t 205 (262)
T 1b0u_A 127 HDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKT 205 (262)
T ss_dssp HHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCE
Confidence 12345678889999996 45 7899999999999999999999999999999999999999999999888743 4899
Q ss_pred EEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 309 MVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+||||++++..+||+|++|++|+++ ..|+..++.
T Consensus 206 vi~vtHd~~~~~~~~d~v~~l~~G~i~-~~g~~~~~~ 241 (262)
T 1b0u_A 206 MVVVTHEMGFARHVSSHVIFLHQGKIE-EEGDPEQVF 241 (262)
T ss_dssp EEEECSCHHHHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred EEEEeCCHHHHHHhCCEEEEEECCEEE-EeCCHHHHH
Confidence 999999999999999999999999974 567776654
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=381.03 Aligned_cols=199 Identities=28% Similarity=0.397 Sum_probs=172.8
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------c
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~ 161 (555)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 3 ~~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 3 EILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred cEEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 46999999999988889999999999999999999999999999999999999999999998843 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|+|++|++.+++.+||.||+..+.. .. ........+++.+
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~---------------~~------------------------~~~~~~~~~~~~~ 123 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPML---------------KM------------------------GKPKKEAKERGEY 123 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHH---------------HT------------------------TCCHHHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHH---------------Hc------------------------CCCHHHHHHHHHH
Confidence 49999999988888999999853210 00 0011123456788
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAF 318 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~ 318 (555)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||+++
T Consensus 124 ~l~~~~l~-~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~ 202 (224)
T 2pcj_A 124 LLSELGLG-DKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHEREL 202 (224)
T ss_dssp HHHHTTCT-TCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHH
T ss_pred HHHHcCCc-hhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHH
Confidence 89999996 567899999999999999999999999999999999999999999999888743 48999999999999
Q ss_pred HHhhcceeEEecCCeEe
Q 008750 319 LDQLCTKIVETEMGVSR 335 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~ 335 (555)
+ .+||+|++|++|++.
T Consensus 203 ~-~~~d~v~~l~~G~i~ 218 (224)
T 2pcj_A 203 A-ELTHRTLEMKDGKVV 218 (224)
T ss_dssp H-TTSSEEEEEETTEEE
T ss_pred H-HhCCEEEEEECCEEE
Confidence 8 799999999999874
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-48 Score=384.42 Aligned_cols=203 Identities=27% Similarity=0.381 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
+|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 4899999999963 4699999999999999999999999999999999999999999999998532
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.||||+|++.+++.+||.||+..+.. .... ......+..++
T Consensus 81 ~~~~i~~v~Q~~~l~~~~tv~enl~~~~~---------------~~~~---------------------~~~~~~~~~~~ 124 (235)
T 3tif_A 81 RRDKIGFVFQQFNLIPLLTALENVELPLI---------------FKYR---------------------GAMSGEERRKR 124 (235)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHH---------------TCSS---------------------SCCCHHHHHHH
T ss_pred hhccEEEEecCCccCCCCcHHHHHHHHHH---------------hhhc---------------------cCCCHHHHHHH
Confidence 49999999999888999999864310 0000 00111223456
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSH 314 (555)
+.++++.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.+++++ .|.|||+|||
T Consensus 125 ~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtH 204 (235)
T 3tif_A 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (235)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECS
T ss_pred HHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcC
Confidence 788899999975456899999999999999999999999999999999999999999999888753 3899999999
Q ss_pred CHHHHHhhcceeEEecCCeEee
Q 008750 315 DRAFLDQLCTKIVETEMGVSRT 336 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~ 336 (555)
|++.+ .+||+|++|++|++..
T Consensus 205 d~~~~-~~~d~i~~l~~G~i~~ 225 (235)
T 3tif_A 205 DINVA-RFGERIIYLKDGEVER 225 (235)
T ss_dssp CHHHH-TTSSEEEEEETTEEEE
T ss_pred CHHHH-HhCCEEEEEECCEEEE
Confidence 99965 7999999999999743
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-48 Score=387.72 Aligned_cols=206 Identities=23% Similarity=0.310 Sum_probs=180.4
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
++|+++||++.|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .++|
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred ceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 579999999999999999999999999999999999999999999999999999999999998642 4999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..||.||+..... ........+++.++++.
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~-----------------------------------------~~~~~~~~~~~~~~l~~ 128 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRA-----------------------------------------PYGGSQDRQALQQVMAQ 128 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGT-----------------------------------------TSCSTTHHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhh-----------------------------------------hcCcHHHHHHHHHHHHH
Confidence 9999988888999999864320 00122345677888999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhcc------CCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ------DPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~------~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
+|+. ...++++.+|||||||||+|||||+. +|++|||||||++||+.++..+.++|++ .+.|||+||||
T Consensus 129 ~~l~-~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHd 207 (266)
T 4g1u_C 129 TDCL-ALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHD 207 (266)
T ss_dssp TTCS-TTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSC
T ss_pred cCCh-hHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcC
Confidence 9996 46789999999999999999999999 9999999999999999999999887753 35799999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||||++|++|++ .+.|+..++
T Consensus 208 l~~~~~~~d~v~vl~~G~i-~~~g~~~~~ 235 (266)
T 4g1u_C 208 LNLAALYADRIMLLAQGKL-VACGTPEEV 235 (266)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEECHHHH
T ss_pred HHHHHHhCCEEEEEECCEE-EEEcCHHHH
Confidence 9999999999999999997 456776554
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-48 Score=384.65 Aligned_cols=210 Identities=26% Similarity=0.383 Sum_probs=179.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------eEEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------KIAF 165 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------~ig~ 165 (555)
.++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .|||
T Consensus 13 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~ 92 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISY 92 (256)
T ss_dssp -CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEE
T ss_pred CCeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEE
Confidence 4669999999999988999999999999999999999999999999999999999999999998542 5999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++.+||.||+..... +. .....+...++.++++.
T Consensus 93 v~q~~~l~~~ltv~enl~~~~~---------------~~------------------------~~~~~~~~~~~~~~l~~ 133 (256)
T 1vpl_A 93 LPEEAGAYRNMQGIEYLRFVAG---------------FY------------------------ASSSSEIEEMVERATEI 133 (256)
T ss_dssp ECTTCCCCTTSBHHHHHHHHHH---------------HH------------------------CCCHHHHHHHHHHHHHH
T ss_pred EcCCCCCCCCCcHHHHHHHHHH---------------Hc------------------------CCChHHHHHHHHHHHHH
Confidence 9999988888899999853210 00 01111223567788999
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+
T Consensus 134 ~gL~-~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 212 (256)
T 1vpl_A 134 AGLG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFL 212 (256)
T ss_dssp HCCG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTT
T ss_pred CCCc-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHH
Confidence 9996 467899999999999999999999999999999999999999999999888753 589999999999999999
Q ss_pred cceeEEecCCeEeeccCChHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
||+|++|++|++. +.|+..++.
T Consensus 213 ~d~v~~l~~G~i~-~~g~~~~~~ 234 (256)
T 1vpl_A 213 CDRIALIHNGTIV-ETGTVEELK 234 (256)
T ss_dssp CSEEEEEETTEEE-EEEEHHHHH
T ss_pred CCEEEEEECCEEE-EecCHHHHH
Confidence 9999999999974 567766553
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-48 Score=381.51 Aligned_cols=208 Identities=22% Similarity=0.326 Sum_probs=177.1
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
++|+++||+++|+++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. .||
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred ceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999988899999999999999999999999999999999999999999999998532 399
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+++.+||.||+..... . ........+++.++++
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~-----------------~-----------------------~~~~~~~~~~~~~~l~ 124 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAY-----------------N-----------------------RKDKEGIKRDLEWIFS 124 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGT-----------------T-----------------------CCCSSHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhh-----------------c-----------------------CCCHHHHHHHHHHHHH
Confidence 99999988888899999864210 0 0011223345666777
Q ss_pred hcC-CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHH
Q 008750 245 ELG-FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lg-l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~ 320 (555)
.++ +. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++.
T Consensus 125 ~~~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~ 203 (240)
T 1ji0_A 125 LFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGAL 203 (240)
T ss_dssp HCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHH
T ss_pred HcccHh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 774 74 456889999999999999999999999999999999999999999999888753 5899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. +.|+..++.
T Consensus 204 ~~~d~v~~l~~G~i~-~~g~~~~~~ 227 (240)
T 1ji0_A 204 KVAHYGYVLETGQIV-LEGKASELL 227 (240)
T ss_dssp HHCSEEEEEETTEEE-EEEEHHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHHh
Confidence 999999999999974 567665543
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-48 Score=399.70 Aligned_cols=211 Identities=27% Similarity=0.441 Sum_probs=183.1
Q ss_pred CCccEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEE
Q 008750 94 ISSGVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIA 164 (555)
Q Consensus 94 ~~~~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig 164 (555)
.+++|+++||+++| +++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||
T Consensus 11 ~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig 90 (355)
T 1z47_A 11 GSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNVG 90 (355)
T ss_dssp CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSEE
T ss_pred CCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcEE
Confidence 45679999999999 88889999999999999999999999999999999999999999999999854 2599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||+|++.+++.+||+||+..+... ......+..+++.++++
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~~l~ 131 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLRE---------------------------------------KRVPKDEMDARVRELLR 131 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHH
Confidence 999999998999999998643210 00112234567888999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~ 320 (555)
.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++.
T Consensus 132 ~~gL~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~ 210 (355)
T 1z47_A 132 FMRLE-SYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEAL 210 (355)
T ss_dssp HTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHH
T ss_pred HcCCh-hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH
Confidence 99996 567999999999999999999999999999999999999999999998887643 4899999999999999
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.+||+|++|++|++. ..|+..+++
T Consensus 211 ~~adri~vl~~G~i~-~~g~~~~l~ 234 (355)
T 1z47_A 211 EVADRVLVLHEGNVE-QFGTPEEVY 234 (355)
T ss_dssp HHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999974 567766543
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-48 Score=388.32 Aligned_cols=218 Identities=20% Similarity=0.247 Sum_probs=179.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~i 163 (555)
+++|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 84 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGI 84 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTE
T ss_pred CcEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCE
Confidence 3469999999999988999999999999999999999999999999999999999999999998532 49
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHH---hcCcccHHHHHH
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQ---AVNLDTLDAKVS 240 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~ 240 (555)
||++|++.+++..||.||+..+.... . .. ... ..+. .........++.
T Consensus 85 ~~v~q~~~l~~~~tv~enl~~~~~~~----------------~-~~--~~~----------~~~~~~~~~~~~~~~~~~~ 135 (257)
T 1g6h_A 85 VRTFQTPQPLKEMTVLENLLIGEICP----------------G-ES--PLN----------SLFYKKWIPKEEEMVEKAF 135 (257)
T ss_dssp EECCCCCGGGGGSBHHHHHHGGGTST----------------T-SC--HHH----------HHHHCSSCCCCHHHHHHHH
T ss_pred EEEccCCccCCCCcHHHHHHHHHhhh----------------c-cC--ccc----------ccccccccCCHHHHHHHHH
Confidence 99999998888899999986431000 0 00 000 0000 001122345678
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 136 ~~l~~~~l~-~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~ 214 (257)
T 1g6h_A 136 KILEFLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLD 214 (257)
T ss_dssp HHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCS
T ss_pred HHHHHcCCc-hhhCCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHH
Confidence 899999996 567899999999999999999999999999999999999999999999888753 4899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~ 343 (555)
++..+||+|++|++|++. +.|+..+
T Consensus 215 ~~~~~~d~v~~l~~G~i~-~~g~~~~ 239 (257)
T 1g6h_A 215 IVLNYIDHLYVMFNGQII-AEGRGEE 239 (257)
T ss_dssp TTGGGCSEEEEEETTEEE-EEEESHH
T ss_pred HHHHhCCEEEEEECCEEE-EEeCHHH
Confidence 999999999999999974 4566655
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=398.14 Aligned_cols=208 Identities=26% Similarity=0.377 Sum_probs=181.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 5899999999988889999999999999999999999999999999999999999999999854 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||.||+..+... ......+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 123 (362)
T 2it1_A 83 NWALYPHMTVYKNIAFPLEL---------------------------------------RKAPREEIDKKVREVAKMLHI 123 (362)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998643210 001122345678889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 202 (362)
T 2it1_A 124 D-KLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMAD 202 (362)
T ss_dssp T-TCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999998887743 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~~~ 222 (362)
T 2it1_A 203 RIAVIREGEIL-QVGTPDEVY 222 (362)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EEcCHHHHH
Confidence 99999999974 557766543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-47 Score=398.47 Aligned_cols=208 Identities=25% Similarity=0.394 Sum_probs=180.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|+++++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 5899999999998889999999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++++||+||+..+... . .....+..+++.++++.+|+
T Consensus 83 ~~~l~~~ltv~eni~~~~~~---------------~------------------------~~~~~~~~~~v~~~l~~~~L 123 (359)
T 2yyz_A 83 NYALYPHMTVFENIAFPLRA---------------R------------------------RISKDEVEKRVVEIARKLLI 123 (359)
T ss_dssp SCCCCTTSCHHHHHHGGGSS---------------S------------------------CSHHHHTTHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------c------------------------CCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998653210 0 00011224567889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 124 ~-~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~ad 202 (359)
T 2yyz_A 124 D-NLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMAS 202 (359)
T ss_dssp G-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 6 567999999999999999999999999999999999999999999998887743 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..+.+
T Consensus 203 ri~vl~~G~i~-~~g~~~~l~ 222 (359)
T 2yyz_A 203 RIAVFNQGKLV-QYGTPDEVY 222 (359)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 567766543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=397.27 Aligned_cols=208 Identities=29% Similarity=0.449 Sum_probs=180.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ce
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ 162 (555)
+|+++||+++|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 5899999999998889999999999999999999999999999999999999999999998743 24
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||||+|++.+++++||.+|+..+... ......+..+++.++
T Consensus 83 ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~ 123 (372)
T 1g29_1 83 IAMVFQSYALYPHMTVYDNIAFPLKL---------------------------------------RKVPRQEIDQRVREV 123 (372)
T ss_dssp EEEECSCCCCCTTSCHHHHHHHHHHH---------------------------------------TTCCHHHHHHHHHHH
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHH
Confidence 99999999998999999998643210 001122345678889
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAF 318 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~ 318 (555)
++.+||. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||+++
T Consensus 124 l~~~~L~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~ 202 (372)
T 1g29_1 124 AELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVE 202 (372)
T ss_dssp HHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHH
T ss_pred HHHCCCc-hHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHH
Confidence 9999996 567999999999999999999999999999999999999999999988887643 48999999999999
Q ss_pred HHhhcceeEEecCCeEeeccCChHHHH
Q 008750 319 LDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 319 l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+..+||+|++|++|++. ..|+..+.+
T Consensus 203 a~~~adri~vl~~G~i~-~~g~~~~l~ 228 (372)
T 1g29_1 203 AMTMGDRIAVMNRGVLQ-QVGSPDEVY 228 (372)
T ss_dssp HHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHhCCEEEEEeCCEEE-EeCCHHHHH
Confidence 99999999999999974 567766554
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-47 Score=398.01 Aligned_cols=208 Identities=28% Similarity=0.403 Sum_probs=175.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++.++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ ..||||+|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 5999999999998889999999999999999999999999999999999999999999999853 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++++||+||+..+... ......+..+++.++++.+|+
T Consensus 91 ~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~L 131 (372)
T 1v43_A 91 SYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELLQI 131 (372)
T ss_dssp ------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHh---------------------------------------cCCCHHHHHHHHHHHHHHcCC
Confidence 99998999999998653210 001112335678889999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++++..+||
T Consensus 132 ~-~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~ad 210 (372)
T 1v43_A 132 E-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGD 210 (372)
T ss_dssp G-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCS
T ss_pred h-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCC
Confidence 6 577999999999999999999999999999999999999999999998887753 48999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. ..|+..+.+
T Consensus 211 ri~vl~~G~i~-~~g~~~~l~ 230 (372)
T 1v43_A 211 RIAVMNRGQLL-QIGSPTEVY 230 (372)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EeCCHHHHH
Confidence 99999999974 567766543
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-47 Score=397.08 Aligned_cols=208 Identities=25% Similarity=0.385 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCce--eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------c
Q 008750 97 GVKLENISKSYKGVT--VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------------M 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~--vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------------~ 161 (555)
+|+++||+++|++.+ +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+ .
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 589999999998887 9999999999999999999999999999999999999999999998743 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.||||+|++.+++.+||.||+..+... ......+..+++.+
T Consensus 83 ~ig~v~Q~~~l~~~ltv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~ 123 (353)
T 1oxx_K 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (353)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred CEEEEeCCCccCCCCCHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHH
Confidence 599999999998999999998653210 00111233567888
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~ 317 (555)
+++.+|+. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .|.|+|+||||++
T Consensus 124 ~l~~~~L~-~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~ 202 (353)
T 1oxx_K 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (353)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHHHcCCc-hHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHH
Confidence 99999996 567999999999999999999999999999999999999999999988887643 4899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+||+|++|++|++. ..|+..+.+
T Consensus 203 ~~~~~adri~vl~~G~i~-~~g~~~~l~ 229 (353)
T 1oxx_K 203 DIFAIADRVGVLVKGKLV-QVGKPEDLY 229 (353)
T ss_dssp HHHHHCSEEEEEETTEEE-EEECHHHHH
T ss_pred HHHHhCCEEEEEECCEEE-EEcCHHHHH
Confidence 999999999999999974 567766543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-47 Score=392.85 Aligned_cols=203 Identities=27% Similarity=0.409 Sum_probs=177.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q 168 (555)
+|+++||+++|+++ +|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.+. .||||+|
T Consensus 1 ml~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q 79 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEec
Confidence 48999999999888 99999999999999999999999999999999999999999999998543 5999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||+||+..+... .... .. +++.++++.+|+
T Consensus 80 ~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~--~~-~~v~~~l~~~~L 117 (348)
T 3d31_A 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------KKIK--DP-KRVLDTARDLKI 117 (348)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------HCCC--CH-HHHHHHHHHTTC
T ss_pred CcccCCCCCHHHHHHHHHHH---------------------------------------cCCC--HH-HHHHHHHHHcCC
Confidence 99998999999998643100 0011 11 567888999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+..+..+.+.|+ +.|.|+|+||||++++..+||
T Consensus 118 ~-~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~ad 196 (348)
T 3d31_A 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (348)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred c-hHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 56799999999999999999999999999999999999999999998888764 358999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~ 344 (555)
+|++|++|++. ..|+..++
T Consensus 197 ri~vl~~G~i~-~~g~~~~~ 215 (348)
T 3d31_A 197 RIAVVMDGKLI-QVGKPEEI 215 (348)
T ss_dssp EEEEESSSCEE-EEECHHHH
T ss_pred EEEEEECCEEE-EECCHHHH
Confidence 99999999974 55766554
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-47 Score=375.85 Aligned_cols=208 Identities=20% Similarity=0.298 Sum_probs=175.5
Q ss_pred ccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 96 SGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 96 ~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
++|+++||+++|+ ++++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.+. ..|+|++|++.+++
T Consensus 3 ~~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~---~~i~~v~q~~~~~~ 79 (253)
T 2nq2_C 3 KALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---QSIGFVPQFFSSPF 79 (253)
T ss_dssp EEEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC---SCEEEECSCCCCSS
T ss_pred ceEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe---ccEEEEcCCCccCC
Confidence 3699999999998 8889999999999999999999999999999999999999999999853 46999999998888
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.||+....... .... .........++.++++.+|+. +..+
T Consensus 80 ~~tv~enl~~~~~~~--------------~~~~---------------------~~~~~~~~~~~~~~l~~~~l~-~~~~ 123 (253)
T 2nq2_C 80 AYSVLDIVLMGRSTH--------------INTF---------------------AKPKSHDYQVAMQALDYLNLT-HLAK 123 (253)
T ss_dssp CCBHHHHHHGGGGGG--------------SCTT---------------------CCCCHHHHHHHHHHHHHTTCG-GGTT
T ss_pred CCCHHHHHHHhhhhh--------------cccc---------------------cCCCHHHHHHHHHHHHHcCCh-HHhc
Confidence 899999986431000 0000 000112235677889999996 5678
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---C-CceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---Q-DVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~-~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ . |.|||+||||++++..+||+|++|+
T Consensus 124 ~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 203 (253)
T 2nq2_C 124 REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203 (253)
T ss_dssp SBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 3 8999999999999999999999999
Q ss_pred CCeEeeccCChHHH
Q 008750 331 MGVSRTYEGNYSQY 344 (555)
Q Consensus 331 ~G~~~~~~G~y~~~ 344 (555)
+|+ .+.|+..++
T Consensus 204 ~G~--~~~g~~~~~ 215 (253)
T 2nq2_C 204 KQN--FKFGETRNI 215 (253)
T ss_dssp TTE--EEEEEHHHH
T ss_pred CCe--EecCCHHHH
Confidence 998 556776554
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-47 Score=386.43 Aligned_cols=215 Identities=22% Similarity=0.350 Sum_probs=169.4
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
.+.|+++||+|+|+ +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 45699999999995 57899999999999999999999999999999999999999999999998643 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
|||+|++.++ ..||+||+..+..... ...+...++ . ..+...+..+.
T Consensus 131 ~~v~Q~~~lf-~~Tv~eNi~~~~~~~~-----~~~~~~~~~------------------------~---~~l~~~i~~lp 177 (306)
T 3nh6_A 131 GVVPQDTVLF-NDTIADNIRYGRVTAG-----NDEVEAAAQ------------------------A---AGIHDAIMAFP 177 (306)
T ss_dssp EEECSSCCCC-SEEHHHHHHTTSTTCC-----HHHHHHHHH------------------------H---HTCHHHHHHST
T ss_pred EEEecCCccC-cccHHHHHHhhcccCC-----HHHHHHHHH------------------------H---hCcHHHHHhcc
Confidence 9999999874 6799999975421000 000000000 0 00111111111
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
. |+. ...++...+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+ .++|+|+||||++.+..
T Consensus 178 ~--gl~-t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~ 254 (306)
T 3nh6_A 178 E--GYR-TQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN 254 (306)
T ss_dssp T--GGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT
T ss_pred c--hhh-hHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc
Confidence 1 332 234566789999999999999999999999999999999999999999888754 47899999999999986
Q ss_pred hcceeEEecCCeEeeccCChHHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
||+|++|++|++ +..|++.++...
T Consensus 255 -aD~i~vl~~G~i-v~~G~~~el~~~ 278 (306)
T 3nh6_A 255 -ADQILVIKDGCI-VERGRHEALLSR 278 (306)
T ss_dssp -CSEEEEEETTEE-EEEECHHHHHHH
T ss_pred -CCEEEEEECCEE-EEECCHHHHHhc
Confidence 999999999997 467888877653
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-47 Score=384.79 Aligned_cols=214 Identities=25% Similarity=0.371 Sum_probs=177.4
Q ss_pred CCccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------
Q 008750 94 ISSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (555)
Q Consensus 94 ~~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------ 161 (555)
..++|+++||+++|+++++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 34579999999999988999999999999999999999999999999999999999999999998543
Q ss_pred eEEEEecccccCc--CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 KIAFLSQEFEVSM--SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 ~ig~v~Q~~~~~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
.|||++|++.+.+ .+||+||+..+....... . ........+++
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~-----------~------------------------~~~~~~~~~~~ 142 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGV-----------Y------------------------QDIDDEIRNEA 142 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC--------------------------------------------CCHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhcccc-----------c------------------------cCCcHHHHHHH
Confidence 3999999986544 459999986432100000 0 00011224567
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceE--EEEec
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPM--VIISH 314 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tv--IiiSH 314 (555)
.++++.+|+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|| |+|||
T Consensus 143 ~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtH 221 (279)
T 2ihy_A 143 HQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTH 221 (279)
T ss_dssp HHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred HHHHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEec
Confidence 7889999995 567899999999999999999999999999999999999999999999988753 38899 99999
Q ss_pred CHHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 315 DRAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
|++++..+||+|++|++|++. +.|+..++
T Consensus 222 d~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 250 (279)
T 2ihy_A 222 FIEEITANFSKILLLKDGQSI-QQGAVEDI 250 (279)
T ss_dssp CGGGCCTTCCEEEEEETTEEE-EEEEHHHH
T ss_pred CHHHHHHhCCEEEEEECCEEE-EECCHHHH
Confidence 999999999999999999974 56776554
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-47 Score=374.46 Aligned_cols=203 Identities=27% Similarity=0.358 Sum_probs=174.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
+|+++||+++|++ +|+||||+|++ |++||+||||||||||+|+|+|+++|++|+|.++|.+ ..|||++|
T Consensus 1 ml~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q 77 (240)
T 2onk_A 1 MFLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CCEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred CEEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcC
Confidence 3789999999976 59999999999 9999999999999999999999999999999999843 25999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++.+||+||+..+... .......+++.++++.+|+
T Consensus 78 ~~~l~~~ltv~enl~~~~~~-----------------------------------------~~~~~~~~~~~~~l~~~~l 116 (240)
T 2onk_A 78 DYALFPHLSVYRNIAYGLRN-----------------------------------------VERVERDRRVREMAEKLGI 116 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTT-----------------------------------------SCHHHHHHHHHHHHHTTTC
T ss_pred CCccCCCCcHHHHHHHHHHH-----------------------------------------cCCchHHHHHHHHHHHcCC
Confidence 99888889999998643200 0000013457788999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|++ .|.|||+||||++++..+||
T Consensus 117 ~-~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d 195 (240)
T 2onk_A 117 A-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp T-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred H-HHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 6 467899999999999999999999999999999999999999999999988753 38999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
+|++|++|++. +.|+..++.
T Consensus 196 ~i~~l~~G~i~-~~g~~~~~~ 215 (240)
T 2onk_A 196 EVAVMLNGRIV-EKGKLKELF 215 (240)
T ss_dssp EEEEEETTEEE-EEECHHHHH
T ss_pred EEEEEECCEEE-EECCHHHHH
Confidence 99999999974 567766553
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=377.93 Aligned_cols=208 Identities=26% Similarity=0.360 Sum_probs=176.9
Q ss_pred cEEEEeEEEEeC--C---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEE
Q 008750 97 GVKLENISKSYK--G---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~--~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig 164 (555)
+|+++||+++|+ + +++|+||||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+. .||
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 589999999997 4 5799999999999999999999999999999999999999999999998542 599
Q ss_pred EEeccc-ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 165 FLSQEF-EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 165 ~v~Q~~-~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
||+|++ ..++..||.||+...... ........+++.+++
T Consensus 82 ~v~q~~~~~~~~~tv~enl~~~~~~----------------------------------------~~~~~~~~~~~~~~l 121 (266)
T 2yz2_A 82 IAFQYPEDQFFAERVFDEVAFAVKN----------------------------------------FYPDRDPVPLVKKAM 121 (266)
T ss_dssp EECSSGGGGCCCSSHHHHHHHTTTT----------------------------------------TCTTSCSHHHHHHHH
T ss_pred EEeccchhhcCCCcHHHHHHHHHHh----------------------------------------cCCHHHHHHHHHHHH
Confidence 999996 455778999998542100 001123345678889
Q ss_pred hhcCCCc-cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHH
Q 008750 244 PELGFTA-DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~-~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l 319 (555)
+.+|+.. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++
T Consensus 122 ~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~ 201 (266)
T 2yz2_A 122 EFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETV 201 (266)
T ss_dssp HHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTT
T ss_pred HHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHH
Confidence 9999962 467899999999999999999999999999999999999999999999888743 489999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
..+||+|++|++|++. +.|+..+..
T Consensus 202 ~~~~d~v~~l~~G~i~-~~g~~~~~~ 226 (266)
T 2yz2_A 202 INHVDRVVVLEKGKKV-FDGTRMEFL 226 (266)
T ss_dssp GGGCSEEEEEETTEEE-EEEEHHHHH
T ss_pred HHhCCEEEEEECCEEE-EeCCHHHHh
Confidence 9999999999999874 567665543
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-46 Score=374.31 Aligned_cols=217 Identities=19% Similarity=0.262 Sum_probs=177.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~----------- 161 (555)
.++|+++||+|+|+++++|+||||+|++||+++|+|+||||||||+|+|+|+ ++|++|+|.++|.+.
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999888999999999999999999999999999999999999 578999999998532
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|+|++|++.+++.+||.+|+....... .. ... . ......+...++.+
T Consensus 98 ~i~~v~Q~~~l~~~~tv~e~~~~~~~~~----------~~-~~~-~--------------------~~~~~~~~~~~~~~ 145 (267)
T 2zu0_C 98 GIFMAFQYPVEIPGVSNQFFLQTALNAV----------RS-YRG-Q--------------------ETLDRFDFQDLMEE 145 (267)
T ss_dssp TEEEECSSCCCCTTCBHHHHHHHHHHHH----------HH-GGG-C--------------------CCCCHHHHHHHHHH
T ss_pred CEEEEccCccccccccHHHHHHHHHHhh----------hh-hhc-c--------------------ccCCHHHHHHHHHH
Confidence 3999999998888899999875321100 00 000 0 00011123456788
Q ss_pred HhhhcCCCccccCCCCC-CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVA-SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~-~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~ 317 (555)
+++.+|+.....++++. +|||||||||+|||||+.+|+||||||||++||+.+++.+.++|++ .|.|||+||||++
T Consensus 146 ~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~ 225 (267)
T 2zu0_C 146 KIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQR 225 (267)
T ss_dssp HHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGG
T ss_pred HHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHH
Confidence 89999996556788887 5999999999999999999999999999999999999999998754 4889999999999
Q ss_pred HHHhh-cceeEEecCCeEeeccCChHHH
Q 008750 318 FLDQL-CTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 318 ~l~~~-~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++..+ ||+|++|++|++. +.|+..+.
T Consensus 226 ~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 252 (267)
T 2zu0_C 226 ILDYIKPDYVHVLYQGRIV-KSGDFTLV 252 (267)
T ss_dssp GGGTSCCSEEEEEETTEEE-EEECTTHH
T ss_pred HHHhhcCCEEEEEECCEEE-EEcCHHHH
Confidence 99876 9999999999974 55665543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-46 Score=372.86 Aligned_cols=209 Identities=24% Similarity=0.304 Sum_probs=171.2
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC--CCCCceEEEEcCCCc-----------eE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ--EEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~--~~p~~G~I~~~g~~~-----------~i 163 (555)
+|+++||+|+|+++++|+||||+|++||+++|+|+||||||||+|+|+|+ ++|++|+|.++|.+. .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999988999999999999999999999999999999999999 889999999998532 38
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|++|++.+++.+||.+|+...... .... .....+...++.+++
T Consensus 83 ~~v~q~~~~~~~~tv~e~l~~~~~~--------------~~~~----------------------~~~~~~~~~~~~~~l 126 (250)
T 2d2e_A 83 FLAFQYPVEVPGVTIANFLRLALQA--------------KLGR----------------------EVGVAEFWTKVKKAL 126 (250)
T ss_dssp CCCCCCCC-CCSCBHHHHHHHHHHH--------------HHTS----------------------CCCHHHHHHHHHHHH
T ss_pred EEeccCCccccCCCHHHHHHHHHHh--------------hccc----------------------cCCHHHHHHHHHHHH
Confidence 9999999888889999998532100 0000 001112235677889
Q ss_pred hhcCCCccccCCCCCC-CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHH
Q 008750 244 PELGFTADDGDRLVAS-FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~-LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l 319 (555)
+.+|+.....++++.+ |||||||||+|||||+.+|++|||||||++||+.++..+.++|+ +.|.|||+||||++++
T Consensus 127 ~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~ 206 (250)
T 2d2e_A 127 ELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRIL 206 (250)
T ss_dssp HHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGG
T ss_pred HHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH
Confidence 9999965567899999 99999999999999999999999999999999999999988874 3589999999999999
Q ss_pred Hhh-cceeEEecCCeEeeccCChH
Q 008750 320 DQL-CTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 320 ~~~-~dri~~l~~G~~~~~~G~y~ 342 (555)
..+ ||+|++|++|++. +.|+..
T Consensus 207 ~~~~~d~v~~l~~G~i~-~~g~~~ 229 (250)
T 2d2e_A 207 NYIQPDKVHVMMDGRVV-ATGGPE 229 (250)
T ss_dssp GTSCCSEEEEEETTEEE-EEESHH
T ss_pred HHhcCCEEEEEECCEEE-EEeCHH
Confidence 888 5999999999974 456654
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-45 Score=370.38 Aligned_cols=213 Identities=22% Similarity=0.357 Sum_probs=171.4
Q ss_pred CccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 95 SSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
.++|+++||+|+|++ +++|+||||+|++||+++|+|+||||||||+|+|+|+++|++|+|.++|.+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 356999999999976 6899999999999999999999999999999999999999999999998542
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|+||+|++.++. .||+||+..+... ......+.. ......+.+
T Consensus 94 ~i~~v~Q~~~l~~-~tv~enl~~~~~~------------------~~~~~~~~~-----------------~~~~~~~~~ 137 (271)
T 2ixe_A 94 QVAAVGQEPLLFG-RSFRENIAYGLTR------------------TPTMEEITA-----------------VAMESGAHD 137 (271)
T ss_dssp HEEEECSSCCCCS-SBHHHHHHTTCSS------------------CCCHHHHHH-----------------HHHHHTCHH
T ss_pred cEEEEecCCcccc-ccHHHHHhhhccc------------------CChHHHHHH-----------------HHHHHhHHH
Confidence 4999999998755 6999998653210 000000000 000112344
Q ss_pred Hhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
+++.+ |+. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .|.|||+||||
T Consensus 138 ~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd 216 (271)
T 2ixe_A 138 FISGFPQGYD-TEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQ 216 (271)
T ss_dssp HHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSC
T ss_pred HHHhhhcchh-hhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCC
Confidence 55555 554 356788999999999999999999999999999999999999999999998753 38899999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++++.. ||+|++|++|++. ..|+..++..
T Consensus 217 ~~~~~~-~d~v~~l~~G~i~-~~g~~~~l~~ 245 (271)
T 2ixe_A 217 LSLAER-AHHILFLKEGSVC-EQGTHLQLME 245 (271)
T ss_dssp HHHHTT-CSEEEEEETTEEE-EEECHHHHHH
T ss_pred HHHHHh-CCEEEEEECCEEE-EECCHHHHHh
Confidence 999974 9999999999874 5677766543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=365.87 Aligned_cols=209 Identities=22% Similarity=0.401 Sum_probs=164.2
Q ss_pred cEEEEeEEEEe--CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEE
Q 008750 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig 164 (555)
.|+++||+|+| +++++|+||||+|++||++||+|+||||||||+|+|+|+++|++|+|.++|.+. .|+
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~ 86 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVG 86 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEE
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEE
Confidence 38999999999 357899999999999999999999999999999999999999999999998532 499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
||+|++.++. .||+||+....... . .+.+...++ .. .+.++++
T Consensus 87 ~v~Q~~~l~~-~tv~enl~~~~~~~-~----~~~~~~~l~------------------------~~-------~l~~~~~ 129 (247)
T 2ff7_A 87 VVLQDNVLLN-RSIIDNISLANPGM-S----VEKVIYAAK------------------------LA-------GAHDFIS 129 (247)
T ss_dssp EECSSCCCTT-SBHHHHHTTTCTTC-C----HHHHHHHHH------------------------HH-------TCHHHHH
T ss_pred EEeCCCcccc-ccHHHHHhccCCCC-C----HHHHHHHHH------------------------Hh-------ChHHHHH
Confidence 9999988754 69999985431000 0 000000000 00 0111222
Q ss_pred hc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 245 EL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 245 ~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
.+ |+. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.|++ .|.|||+||||++++.
T Consensus 130 ~~~~gl~-~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~ 208 (247)
T 2ff7_A 130 ELREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208 (247)
T ss_dssp TSTTGGG-CBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT
T ss_pred hCcchhh-hhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH
Confidence 22 332 234667889999999999999999999999999999999999999999988754 4899999999999986
Q ss_pred hhcceeEEecCCeEeeccCChHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
.||+|++|++|++. +.|+..++.
T Consensus 209 -~~d~v~~l~~G~i~-~~g~~~~l~ 231 (247)
T 2ff7_A 209 -NADRIIVMEKGKIV-EQGKHKELL 231 (247)
T ss_dssp -TSSEEEEEETTEEE-EEECHHHHH
T ss_pred -hCCEEEEEECCEEE-EECCHHHHH
Confidence 59999999999974 567766554
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=361.24 Aligned_cols=190 Identities=23% Similarity=0.310 Sum_probs=165.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----ceEEEEeccc
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----MKIAFLSQEF 170 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----~~ig~v~Q~~ 170 (555)
.+|+++||+++|++ ++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+ ..|+|++|++
T Consensus 9 ~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~~ 87 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI 87 (214)
T ss_dssp CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC
T ss_pred ceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCCC
Confidence 46999999999988 99999999999999999999999999999999999999999999999864 3699999999
Q ss_pred ccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc
Q 008750 171 EVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA 250 (555)
Q Consensus 171 ~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~ 250 (555)
.+++.+||.||+..... . ... ... ..++.++++.+|+..
T Consensus 88 ~~~~~~tv~enl~~~~~---------------~------------------------~~~-~~~-~~~~~~~l~~~gl~~ 126 (214)
T 1sgw_A 88 IVPRKISVEDYLKAVAS---------------L------------------------YGV-KVN-KNEIMDALESVEVLD 126 (214)
T ss_dssp CCCTTSBHHHHHHHHHH---------------H------------------------TTC-CCC-HHHHHHHHHHTTCCC
T ss_pred cCCCCCCHHHHHHHHHH---------------h------------------------cCC-chH-HHHHHHHHHHcCCCc
Confidence 88788899999853210 0 001 112 456788899999974
Q ss_pred cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcceeE
Q 008750 251 DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 251 ~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
. ++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|++ .|.|||+||||++++..+||+|+
T Consensus 127 -~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~ 204 (214)
T 1sgw_A 127 -L-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH 204 (214)
T ss_dssp -T-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG
T ss_pred -C-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE
Confidence 4 888999999999999999999999999999999999999999998888753 47899999999999999999987
Q ss_pred Ee
Q 008750 328 ET 329 (555)
Q Consensus 328 ~l 329 (555)
.+
T Consensus 205 ~~ 206 (214)
T 1sgw_A 205 KY 206 (214)
T ss_dssp GG
T ss_pred Ee
Confidence 54
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-45 Score=367.92 Aligned_cols=199 Identities=23% Similarity=0.302 Sum_probs=171.9
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------eEE-
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-------KIA- 164 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-------~ig- 164 (555)
+|+++||+++|++ +++|+|+||+|+ |++++|+|+||||||||+|+|+|++ |++|+|.++|.+. .|+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~ 78 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYST 78 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEE
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEE
Confidence 4899999999976 789999999999 9999999999999999999999999 9999999998532 599
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++.+ ..||.||+..... + . .....++.++++
T Consensus 79 ~v~Q~~~l--~~tv~enl~~~~~---------------~---------------------------~-~~~~~~~~~~l~ 113 (263)
T 2pjz_A 79 NLPEAYEI--GVTVNDIVYLYEE---------------L---------------------------K-GLDRDLFLEMLK 113 (263)
T ss_dssp CCGGGSCT--TSBHHHHHHHHHH---------------H---------------------------T-CCCHHHHHHHHH
T ss_pred EeCCCCcc--CCcHHHHHHHhhh---------------h---------------------------c-chHHHHHHHHHH
Confidence 99999876 8899999853210 0 0 112345778889
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcc
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~d 324 (555)
.+|+.....++++.+|||||||||+|||||+.+|++|||||||++||+.+++++.++|++...|||+||||++++..+||
T Consensus 114 ~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~tviivtHd~~~~~~~~d 193 (263)
T 2pjz_A 114 ALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGKEGILVTHELDMLNLYKE 193 (263)
T ss_dssp HTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCSEEEEEESCGGGGGGCTT
T ss_pred HcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcCcEEEEEcCHHHHHHhcC
Confidence 99996346789999999999999999999999999999999999999999999999997653399999999999999999
Q ss_pred -eeEEecCCeEeeccCChHH
Q 008750 325 -KIVETEMGVSRTYEGNYSQ 343 (555)
Q Consensus 325 -ri~~l~~G~~~~~~G~y~~ 343 (555)
+|++|++|++. +.|+..+
T Consensus 194 ~~i~~l~~G~i~-~~g~~~~ 212 (263)
T 2pjz_A 194 YKAYFLVGNRLQ-GPISVSE 212 (263)
T ss_dssp SEEEEEETTEEE-EEEEHHH
T ss_pred ceEEEEECCEEE-EecCHHH
Confidence 99999999874 5566544
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=363.99 Aligned_cols=198 Identities=28% Similarity=0.329 Sum_probs=171.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
.+|+++||+++ ++|+||||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.+. .|+|
T Consensus 3 ~~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 3 IVMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred cEEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 36899999986 6999999999999999999999999999999999999999 9999998542 4999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.+++..||+||+..... .... ..++.++++.
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~-~~~~~~~l~~ 113 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQH-------------------------------------------DKTR-TELLNDVAGA 113 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCS-------------------------------------------STTC-HHHHHHHHHH
T ss_pred ECCCCccCCCCcHHHHHHHhhc-------------------------------------------cCCc-HHHHHHHHHH
Confidence 9999988788899999853210 0001 4457778889
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhccCCC-------EEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecC
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD-------LLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHD 315 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~-------lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd 315 (555)
+|+. ...++++.+|||||||||+|||||+.+|+ +|||||||++||+.++..+.++|++ .|.|||+||||
T Consensus 114 ~~l~-~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd 192 (249)
T 2qi9_C 114 LALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHD 192 (249)
T ss_dssp TTCG-GGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSC
T ss_pred cCCh-hHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 9995 56788999999999999999999999999 9999999999999999999888753 48999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||+|++|++|++. +.|+..++
T Consensus 193 ~~~~~~~~d~v~~l~~G~i~-~~g~~~~~ 220 (249)
T 2qi9_C 193 LNHTLRHAHRAWLLKGGKML-ASGRREEV 220 (249)
T ss_dssp HHHHHHHCSEEEEEETTEEE-EEEEHHHH
T ss_pred HHHHHHhCCEEEEEECCEEE-EeCCHHHH
Confidence 99999999999999999874 55766554
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-44 Score=354.62 Aligned_cols=207 Identities=25% Similarity=0.388 Sum_probs=162.0
Q ss_pred ccEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 96 SGVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 96 ~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
.+|+++||+++|+ ++++|+||||+|++|++++|+||||||||||+|+|+|+++|++|+|.++| .|+|++|++.++
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~~~~ 81 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFSWIM 81 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSCCCC
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCCccc
Confidence 4699999999995 46899999999999999999999999999999999999999999999987 599999999876
Q ss_pred cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-ccc
Q 008750 174 MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADD 252 (555)
Q Consensus 174 ~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~ 252 (555)
+ .||+||+..+.... . .... ..++ .. . +.+.++.+... ...
T Consensus 82 ~-~tv~enl~~~~~~~-~--~~~~---~~~~------------------------~~---~----l~~~~~~~~~~~~~~ 123 (229)
T 2pze_A 82 P-GTIKENIIFGVSYD-E--YRYR---SVIK------------------------AC---Q----LEEDISKFAEKDNIV 123 (229)
T ss_dssp S-BCHHHHHHTTSCCC-H--HHHH---HHHH------------------------HT---T----CHHHHTTSTTGGGSC
T ss_pred C-CCHHHHhhccCCcC-h--HHHH---HHHH------------------------Hh---C----cHHHHHhCccccccc
Confidence 5 59999986532100 0 0000 0000 00 0 11122222210 112
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+. +.+ .+.|||+||||++++. .||+|++|
T Consensus 124 ~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l 202 (229)
T 2pze_A 124 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILIL 202 (229)
T ss_dssp BCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEE
T ss_pred ccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEE
Confidence 3456789999999999999999999999999999999999999999986 433 3789999999999986 59999999
Q ss_pred cCCeEeeccCChHHHH
Q 008750 330 EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 330 ~~G~~~~~~G~y~~~~ 345 (555)
++|++. +.|++.++.
T Consensus 203 ~~G~i~-~~g~~~~~~ 217 (229)
T 2pze_A 203 HEGSSY-FYGTFSELQ 217 (229)
T ss_dssp ETTEEE-EEECHHHHH
T ss_pred ECCEEE-EECCHHHHH
Confidence 999974 567776554
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=365.20 Aligned_cols=203 Identities=21% Similarity=0.346 Sum_probs=164.9
Q ss_pred cEEEEeEEEEe-CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 97 GVKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y-~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
+|+++||+|+| +++++|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.+ ..|+|
T Consensus 1 ml~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEE
Confidence 48999999999 56789999999999999999999999999999999999999999999998843 24899
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|++.++. .||+||+..+... .....++.++++.
T Consensus 81 v~q~~~l~~-~tv~enl~~~~~~--------------------------------------------~~~~~~~~~~l~~ 115 (243)
T 1mv5_A 81 VSQDSAIMA-GTIRENLTYGLEG--------------------------------------------DYTDEDLWQVLDL 115 (243)
T ss_dssp ECCSSCCCC-EEHHHHTTSCTTS--------------------------------------------CSCHHHHHHHHHH
T ss_pred EcCCCcccc-ccHHHHHhhhccC--------------------------------------------CCCHHHHHHHHHH
Confidence 999998754 6999998542100 0001123333444
Q ss_pred cCCCc----------cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEe
Q 008750 246 LGFTA----------DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIIS 313 (555)
Q Consensus 246 lgl~~----------~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiS 313 (555)
+|+.. ...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.+.|++ .|.|||+||
T Consensus 116 ~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vt 195 (243)
T 1mv5_A 116 AFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIA 195 (243)
T ss_dssp HTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEEC
T ss_pred hChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 44431 123456789999999999999999999999999999999999988888877643 489999999
Q ss_pred cCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 314 HDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++++. .||+|++|++|++ ...|++.++..
T Consensus 196 H~~~~~~-~~d~v~~l~~G~i-~~~g~~~~~~~ 226 (243)
T 1mv5_A 196 HRLSTIV-DADKIYFIEKGQI-TGSGKHNELVA 226 (243)
T ss_dssp CSHHHHH-HCSEEEEEETTEE-CCCSCHHHHHH
T ss_pred CChHHHH-hCCEEEEEECCEE-EEeCCHHHHHh
Confidence 9999986 5999999999987 46788776543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-45 Score=358.30 Aligned_cols=201 Identities=18% Similarity=0.345 Sum_probs=163.5
Q ss_pred cEEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 97 GVKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 97 ~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
+|+++||+++|+ ++++|+||||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++| .|+|++|++.+ +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~~-~ 78 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAWI-Q 78 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCCC-C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCcC-C
Confidence 589999999997 46899999999999999999999999999999999999999999999987 59999999865 6
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH---HHhhhcCCCc-
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS---KLMPELGFTA- 250 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~lgl~~- 250 (555)
..||+||+...... .. ....++. .+++.+++.+
T Consensus 79 ~~tv~enl~~~~~~-------------------~~------------------------~~~~~~~~~~~l~~~~~~~~~ 115 (237)
T 2cbz_A 79 NDSLRENILFGCQL-------------------EE------------------------PYYRSVIQACALLPDLEILPS 115 (237)
T ss_dssp SEEHHHHHHTTSCC-------------------CT------------------------THHHHHHHHTTCHHHHTTSTT
T ss_pred CcCHHHHhhCcccc-------------------CH------------------------HHHHHHHHHHhhHHHHHhccc
Confidence 88999998643100 00 0000000 1112222211
Q ss_pred ---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---C--CCceEEEEecCHHHHHhh
Q 008750 251 ---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---K--QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 251 ---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~--~~~tvIiiSHd~~~l~~~ 322 (555)
...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. + .+.|||+||||++++. .
T Consensus 116 ~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~ 194 (237)
T 2cbz_A 116 GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-Q 194 (237)
T ss_dssp GGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-G
T ss_pred cccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-h
Confidence 12467889999999999999999999999999999999999999999999883 2 4889999999999985 7
Q ss_pred cceeEEecCCeEeeccCChHHHHH
Q 008750 323 CTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 323 ~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+|++|++|++. ..|++.++..
T Consensus 195 ~d~v~~l~~G~i~-~~g~~~~~~~ 217 (237)
T 2cbz_A 195 VDVIIVMSGGKIS-EMGSYQELLA 217 (237)
T ss_dssp SSEEEEEETTEEE-EEECHHHHHH
T ss_pred CCEEEEEeCCEEE-EeCCHHHHhh
Confidence 9999999999974 5677776543
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-44 Score=357.88 Aligned_cols=202 Identities=19% Similarity=0.312 Sum_probs=162.6
Q ss_pred ccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 96 SGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 96 ~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
++|+++||+|+|++ +++|+||||+|++|++++|+||||||||||+|+|+|+++| +|+|.++|.+. .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 45999999999975 4699999999999999999999999999999999999987 89999998542 4
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+|++|++.++ ..||++|+..+.... . ..++.++
T Consensus 95 i~~v~Q~~~l~-~~tv~enl~~~~~~~-------------------~--------------------------~~~~~~~ 128 (260)
T 2ghi_A 95 IGIVPQDTILF-NETIKYNILYGKLDA-------------------T--------------------------DEEVIKA 128 (260)
T ss_dssp EEEECSSCCCC-SEEHHHHHHTTCTTC-------------------C--------------------------HHHHHHH
T ss_pred EEEEcCCCccc-ccCHHHHHhccCCCC-------------------C--------------------------HHHHHHH
Confidence 99999999875 569999986431000 0 0011111
Q ss_pred hhhcCC-------Cc---cccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEE
Q 008750 243 MPELGF-------TA---DDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMV 310 (555)
Q Consensus 243 l~~lgl-------~~---~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvI 310 (555)
++.+++ +. ...++++.+|||||||||+|||||+.+|+||||||||++||+.++..+.+.|++ .+.|||
T Consensus 129 l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tvi 208 (260)
T 2ghi_A 129 TKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLI 208 (260)
T ss_dssp HHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEE
T ss_pred HHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 222221 11 123567889999999999999999999999999999999999999999888753 378999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+||||++++. .||+|++|++|++. ..|++.++..
T Consensus 209 ivtH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 242 (260)
T 2ghi_A 209 IIAHRLSTIS-SAESIILLNKGKIV-EKGTHKDLLK 242 (260)
T ss_dssp EECSSGGGST-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred EEcCCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 9999999986 59999999999974 5677776643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=372.56 Aligned_cols=200 Identities=21% Similarity=0.354 Sum_probs=170.2
Q ss_pred CccEEEEeEEEEe--CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
.+.|+++||+|+| ++.++|+||||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|.+. .
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ 95 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKA 95 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHT
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCC
Confidence 3569999999999 56789999999999999999999999999999999999998 999999998642 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
||||||++.+++ +||++|+.... ....+++.++
T Consensus 96 ig~v~Q~~~lf~-~tv~enl~~~~----------------------------------------------~~~~~~v~~~ 128 (390)
T 3gd7_A 96 FGVIPQKVFIFS-GTFRKNLDPNA----------------------------------------------AHSDQEIWKV 128 (390)
T ss_dssp EEEESCCCCCCS-EEHHHHHCTTC----------------------------------------------CSCHHHHHHH
T ss_pred EEEEcCCcccCc-cCHHHHhhhcc----------------------------------------------ccCHHHHHHH
Confidence 999999998754 79999974110 0113345667
Q ss_pred hhhcCCCccccCCCCCC-----------CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceE
Q 008750 243 MPELGFTADDGDRLVAS-----------FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPM 309 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~-----------LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tv 309 (555)
++.+|+. ...++++.+ |||||||||+|||||+.+|++|||||||++||+..+..+.+.|++ .+.|+
T Consensus 129 l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tv 207 (390)
T 3gd7_A 129 ADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTV 207 (390)
T ss_dssp HHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCE
T ss_pred HHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEE
Confidence 7778875 456777777 999999999999999999999999999999999999999998865 47899
Q ss_pred EEEecCHHHHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 310 VIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 310 IiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
|+||||++.+. .||||++|++|++. ..|+..+++
T Consensus 208 i~vtHd~e~~~-~aDri~vl~~G~i~-~~g~~~el~ 241 (390)
T 3gd7_A 208 ILCEARIEAML-ECDQFLVIEENKVR-QYDSILELY 241 (390)
T ss_dssp EEECSSSGGGT-TCSEEEEEETTEEE-EESSHHHHH
T ss_pred EEEEcCHHHHH-hCCEEEEEECCEEE-EECCHHHHH
Confidence 99999998774 69999999999974 567766554
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-42 Score=383.30 Aligned_cols=256 Identities=21% Similarity=0.295 Sum_probs=187.6
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC--CceeeeeeeEEEECCCEE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK--GVTVLKDVTWEVKKGEKV 126 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~ 126 (555)
+......+...+.+..+.+++++....+++......... .....+.|+++||+|+|+ +.++|+|+||+|++||++
T Consensus 296 l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~ 372 (587)
T 3qf4_A 296 LMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALA---LPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLV 372 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCCCCTTCBC---CSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCccc---cCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEE
Confidence 333444445667777777777665433221111000000 012345699999999995 457999999999999999
Q ss_pred EEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHH
Q 008750 127 GLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKL 196 (555)
Q Consensus 127 ~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~ 196 (555)
|||||||||||||+++|+|+++|++|+|.++|.+. +|+||||++.++ +.||+||+..+..... .
T Consensus 373 ~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~~~-----~ 446 (587)
T 3qf4_A 373 AVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLF-SGTIKENLKWGREDAT-----D 446 (587)
T ss_dssp EEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCC-SEEHHHHHTTTCSSCC-----H
T ss_pred EEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCc-CccHHHHHhccCCCCC-----H
Confidence 99999999999999999999999999999999753 599999999875 6699999864321000 0
Q ss_pred HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHHHh
Q 008750 197 ERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGKIL 274 (555)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL 274 (555)
+.+.+.++ . .. +.+.+..+ |++ ...++.+.+||||||||++|||||
T Consensus 447 ~~~~~~~~------------------------~---~~----~~~~i~~l~~g~~-~~~~~~~~~LSgGqrQrv~lARal 494 (587)
T 3qf4_A 447 DEIVEAAK------------------------I---AQ----IHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIARAL 494 (587)
T ss_dssp HHHHHHHH------------------------H---TT----CHHHHHTSSSGGG-CEECSSSCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------H---hC----cHHHHHhcccchh-hHhcCCCCCcCHHHHHHHHHHHHH
Confidence 00000000 0 00 11112222 333 234667789999999999999999
Q ss_pred ccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 275 LQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
+.+|++|||||||++||+.+.+.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++ ...|++++....
T Consensus 495 ~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i-~~~g~~~el~~~ 567 (587)
T 3qf4_A 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKV-AGFGTHKELLEH 567 (587)
T ss_dssp HTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEE-EEEECHHHHHHH
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 999999999999999999999999988753 5899999999999996 7999999999997 567888887654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-42 Score=382.30 Aligned_cols=256 Identities=21% Similarity=0.355 Sum_probs=188.4
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCC
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGE 124 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge 124 (555)
..+......+...+.+..+.+++++....+.+... .... .......|+++||+|+|++ +++|+|+||+|++||
T Consensus 296 ~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~---~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~ 370 (582)
T 3b5x_A 296 RPLKALTSVTSEFQRGMAACQTLFGLMDLETERDN--GKYE---AERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGK 370 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCC--CCCC---CCCCCCeEEEEEEEEEcCCCCccccccceEEECCCC
Confidence 35555566666778888888887766543322110 0000 0112356999999999974 679999999999999
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
++||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++ ..||+||+..+......
T Consensus 371 ~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~~--- 446 (582)
T 3b5x_A 371 TVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLF-NDTIANNIAYAAEGEYT--- 446 (582)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccc-cccHHHHHhccCCCCCC---
Confidence 9999999999999999999999999999999998542 599999999875 46999998643200000
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc--CCCccccCCCCCCCChHHHHHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL--GFTADDGDRLVASFSSGWQMRMSLGK 272 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAr 272 (555)
.+++.+.++ .. .+ .+.++.+ |++. ..++...+||||||||++|||
T Consensus 447 -~~~~~~~~~------------------------~~---~l----~~~~~~~p~g~~t-~~~~~~~~LSgGq~qr~~iAr 493 (582)
T 3b5x_A 447 -REQIEQAAR------------------------QA---HA----MEFIENMPQGLDT-VIGENGTSLSGGQRQRVAIAR 493 (582)
T ss_pred -HHHHHHHHH------------------------HC---CC----HHHHHhCcccccc-hhcCCCCcCCHHHHHHHHHHH
Confidence 000000000 00 01 1111221 3332 234556799999999999999
Q ss_pred HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 273 ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 273 aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||+.+|++|||||||++||+.+++.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 494 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b5x_A 494 ALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEII-ERGRHADLLA 567 (582)
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEE-EECCHHHHHh
Confidence 99999999999999999999999999888754 3899999999999996 69999999999974 5788877654
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=386.65 Aligned_cols=259 Identities=22% Similarity=0.311 Sum_probs=188.5
Q ss_pred hhHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeC-CceeeeeeeEEEECCCE
Q 008750 47 CQVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYK-GVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~ 125 (555)
..+......+...+.+..+++++++....+.+... +.........+.|+++||+|+|+ +.++|+|+||+|++||+
T Consensus 308 ~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~----~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~ 383 (598)
T 3qf4_B 308 RPLNELSNQFNMIQMALASAERIFEILDLEEEKDD----PDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQK 383 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCC----SSCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC----CCCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCE
Confidence 35555566666777888888887776544332111 00001112345699999999996 46799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+|||||||||||||+++|+|+++|++|+|.++|.+. +|+||+|++.++ +.||+||+..+...
T Consensus 384 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf-~~tv~eni~~~~~~------- 455 (598)
T 3qf4_B 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILF-STTVKENLKYGNPG------- 455 (598)
T ss_dssp EEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCC-SSBHHHHHHSSSTT-------
T ss_pred EEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccc-cccHHHHHhcCCCC-------
Confidence 999999999999999999999999999999998653 599999999874 67999998643110
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
..+. .+. . ..........+..+.+ |++. .......+||||||||++|||||+
T Consensus 456 -----------~~~~-~~~----------~---~~~~~~~~~~~~~~~~--g~~t-~~~~~g~~LSgGq~Qrv~iAral~ 507 (598)
T 3qf4_B 456 -----------ATDE-EIK----------E---AAKLTHSDHFIKHLPE--GYET-VLTDNGEDLSQGQRQLLAITRAFL 507 (598)
T ss_dssp -----------CCTT-HHH----------H---HTTTTTCHHHHHTSTT--GGGC-BCHHHHTTSCHHHHHHHHHHHHHH
T ss_pred -----------CCHH-HHH----------H---HHHHhCCHHHHHhccc--cccc-hhcCCCCCCCHHHHHHHHHHHHHh
Confidence 0000 000 0 0000011111111111 2211 122334689999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
.+|++|||||||++||+.+...+.+.+++ .|+|+|+||||++.+.. ||+|++|++|++ ...|++++....
T Consensus 508 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i-~~~g~~~~l~~~ 579 (598)
T 3qf4_B 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEI-VEMGKHDELIQK 579 (598)
T ss_dssp TCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSE-EECSCHHHHHHT
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEE-EEECCHHHHHhC
Confidence 99999999999999999999999887754 58999999999999975 999999999997 567888877653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-42 Score=385.56 Aligned_cols=258 Identities=22% Similarity=0.375 Sum_probs=187.7
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+...+.+..+.+++++....+++........ ......+.|+++||+|+|++ .++|+|+||+|++||+
T Consensus 293 ~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~---~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~ 369 (578)
T 4a82_A 293 PLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQ---PIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGET 369 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSCCCTTCC---CCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCCcc---ccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCE
Confidence 455555556677788888888777654433211100000 00123456999999999964 5799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+|||||||||||||+++|+|+++|++|+|.++|.+. .||||+|++.++ +.||+||+..+.....
T Consensus 370 ~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~tv~eni~~~~~~~~----- 443 (578)
T 4a82_A 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILF-SDTVKENILLGRPTAT----- 443 (578)
T ss_dssp EEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCC-SSBHHHHHGGGCSSCC-----
T ss_pred EEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccC-cccHHHHHhcCCCCCC-----
Confidence 999999999999999999999999999999998643 599999999875 5599999865321000
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++.+.++ .. .....+..+.. |++ ...++...+||||||||++|||||+
T Consensus 444 ~~~~~~~~~------------------------~~---~~~~~~~~lp~--g~~-t~~~~~g~~LSgGq~Qrv~lAral~ 493 (578)
T 4a82_A 444 DEEVVEAAK------------------------MA---NAHDFIMNLPQ--GYD-TEVGERGVKLSGGQKQRLSIARIFL 493 (578)
T ss_dssp HHHHHHHHH------------------------HT---TCHHHHHTSTT--GGG-CBCCGGGTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH------------------------Hh---CcHHHHHhCcc--hhh-hhhccCCCcCCHHHHHHHHHHHHHH
Confidence 000000000 00 00111111111 222 2234556799999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++|||||||++||+.+...+.+.+++ .++|+|+||||++.+. .||+|++|++|++ ...|++++...
T Consensus 494 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i-~~~g~~~el~~ 564 (578)
T 4a82_A 494 NNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHI-VETGTHRELIA 564 (578)
T ss_dssp HCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEE-EEEECHHHHHH
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEE-EEECCHHHHHh
Confidence 99999999999999999999999888753 5789999999999996 4999999999997 46788877654
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=381.71 Aligned_cols=257 Identities=22% Similarity=0.356 Sum_probs=186.6
Q ss_pred hHhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC--ceeeeeeeEEEECCCE
Q 008750 48 QVSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG--VTVLKDVTWEVKKGEK 125 (555)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~ 125 (555)
.+......+...+.+..+.+++++....+.+... ..... ......|+++||+|+|++ +++|+|+||+|++||+
T Consensus 297 pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~--~~~~~---~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~ 371 (582)
T 3b60_A 297 PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDE--GKRVI---DRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKT 371 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCCC--CCBCC---SCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccC--CCCCC---CCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCE
Confidence 5555555666677777777777655432221110 00000 112356999999999973 6799999999999999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
+||+||||||||||+++|+|+++|++|+|.++|.+. .|+||||++.++. .||+||+..+......
T Consensus 372 ~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~tv~eni~~~~~~~~~---- 446 (582)
T 3b60_A 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFN-DTVANNIAYARTEEYS---- 446 (582)
T ss_dssp EEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCS-SBHHHHHHTTTTSCCC----
T ss_pred EEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCC-CCHHHHHhccCCCCCC----
Confidence 999999999999999999999999999999998542 5999999998854 6999998643200000
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
.+++.+.+ +.. .+...++.+.+ |++ ...++...+||||||||++|||||+
T Consensus 447 ~~~~~~~l------------------------~~~---~l~~~~~~~p~--g~~-~~~~~~~~~LSgGq~qrl~iAral~ 496 (582)
T 3b60_A 447 REQIEEAA------------------------RMA---YAMDFINKMDN--GLD-TIIGENGVLLSGGQRQRIAIARALL 496 (582)
T ss_dssp HHHHHHHH------------------------HTT---TCHHHHHHSTT--GGG-SBCCTTSCSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHH------------------------HHc---CCHHHHHhccc--ccc-ccccCCCCCCCHHHHHHHHHHHHHH
Confidence 00000000 000 11111111111 332 2334567899999999999999999
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.+|++|||||||++||+.+++.+.+.+++ .|+|+|+||||++.+. .||+|++|++|++. ..|++++...
T Consensus 497 ~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~-~~g~~~~l~~ 567 (582)
T 3b60_A 497 RDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIV-ERGTHSELLA 567 (582)
T ss_dssp HCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEE-EEECHHHHHH
T ss_pred hCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEE-EecCHHHHHH
Confidence 99999999999999999999999888754 4899999999999986 69999999999974 5688777654
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=345.10 Aligned_cols=205 Identities=25% Similarity=0.367 Sum_probs=147.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+.|+++||+|.+ +++|+||||+|++|++++|+|+||||||||+|+|+|+++|++|+|.++| .|+|++|++.+++
T Consensus 38 ~~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~l~~ 112 (290)
T 2bbs_A 38 DDSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNSWIMP 112 (290)
T ss_dssp ------------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSCCCCS
T ss_pred CceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCCccCc
Confidence 3469999999863 5799999999999999999999999999999999999999999999987 5999999988765
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-cccc
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-ADDG 253 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-~~~~ 253 (555)
.||+||+. ..... . .... ..++ .. .+ .+.+..+... ....
T Consensus 113 -~tv~enl~-~~~~~-~--~~~~---~~~~------------------------~~---~l----~~~l~~~~~~~~~~~ 153 (290)
T 2bbs_A 113 -GTIKENII-GVSYD-E--YRYR---SVIK------------------------AC---QL----EEDISKFAEKDNIVL 153 (290)
T ss_dssp -SBHHHHHH-TTCCC-H--HHHH---HHHH------------------------HT---TC----HHHHHTSTTGGGCBC
T ss_pred -ccHHHHhh-Ccccc-h--HHHH---HHHH------------------------Hh---Ch----HHHHHhccccccchh
Confidence 59999986 32100 0 0000 0000 00 00 1112222110 0123
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH-cC--CCceEEEEecCHHHHHhhcceeEEec
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL-GK--QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l-~~--~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
++.+.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+ .+ .+.|||+||||++++. .||+|++|+
T Consensus 154 ~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~ 232 (290)
T 2bbs_A 154 GEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILH 232 (290)
T ss_dssp ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEE
T ss_pred cCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEE
Confidence 4557899999999999999999999999999999999999999999864 33 4889999999999986 599999999
Q ss_pred CCeEeeccCChHHHH
Q 008750 331 MGVSRTYEGNYSQYV 345 (555)
Q Consensus 331 ~G~~~~~~G~y~~~~ 345 (555)
+|++. +.|++.++.
T Consensus 233 ~G~i~-~~g~~~~l~ 246 (290)
T 2bbs_A 233 EGSSY-FYGTFSELQ 246 (290)
T ss_dssp TTEEE-EEECHHHHH
T ss_pred CCeEE-EeCCHHHHh
Confidence 99974 567776654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=396.71 Aligned_cols=252 Identities=22% Similarity=0.340 Sum_probs=184.0
Q ss_pred HHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEeCC---ceeeeeeeEEEECCCEEEEEcCC
Q 008750 56 KKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKG---VTVLKDVTWEVKKGEKVGLVGVN 132 (555)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y~~---~~vL~~vsl~i~~Ge~~~lvG~N 132 (555)
+..+..+..+.+++++....+++.......+ ...+..+.|+++||+|+|++ .++|+||||+|++||++||||+|
T Consensus 1038 ~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~---~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~S 1114 (1321)
T 4f4c_A 1038 FPEYAKATFAGGIIFGMLRKISKIDSLSLAG---EKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPS 1114 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCSSCTTCCCS---BCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECST
T ss_pred HHHHHHHHHHHHHHHHHhhCcccCCCccCCC---CCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCC
Confidence 3455666666666665533222111111111 11133456999999999964 36999999999999999999999
Q ss_pred CccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEEEecccccCcCccHHHHHHHhhHH-HHHHHHHHHHHHH
Q 008750 133 GAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAFLSQEFEVSMSRTVREEFMSAFKE-EMEIAGKLERVQK 201 (555)
Q Consensus 133 GsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~v~Q~~~~~~~~tv~e~~~~~~~~-~~~~~~~~~~~~~ 201 (555)
|||||||+++|.|+++|++|+|.+||.++ +|+||||+|.+ |+.||++|+..+..+ ... .+++.+
T Consensus 1115 GsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~L-F~gTIreNI~~gld~~~~s----d~ei~~ 1189 (1321)
T 4f4c_A 1115 GCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTL-FDCSIAENIIYGLDPSSVT----MAQVEE 1189 (1321)
T ss_dssp TSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCC-CSEEHHHHHSSSSCTTTSC----HHHHHH
T ss_pred CChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEe-eCccHHHHHhccCCCCCCC----HHHHHH
Confidence 99999999999999999999999999753 59999999988 788999998643210 000 000111
Q ss_pred HHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEE
Q 008750 202 ALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLL 281 (555)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lL 281 (555)
+++ .. .+...+..+-+ |++....+ .-.+||||||||++|||||+++|+||
T Consensus 1190 Al~------------------------~a---~l~~~I~~Lp~--GldT~vge-~G~~LSgGQrQriaiARAllr~~~IL 1239 (1321)
T 4f4c_A 1190 AAR------------------------LA---NIHNFIAELPE--GFETRVGD-RGTQLSGGQKQRIAIARALVRNPKIL 1239 (1321)
T ss_dssp HHH------------------------HT---TCHHHHHTSTT--TTCSEETT-TSCSSCHHHHHHHHHHHHHHSCCSEE
T ss_pred HHH------------------------Hh---CChHHHHcCcC--CCCCEecC-CCcccCHHHHHHHHHHHHHHhCCCEE
Confidence 111 00 11112222211 44433322 23589999999999999999999999
Q ss_pred EEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 282 LLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 282 lLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
|||||||+||+++.+.+.+.|++ .++|+|+|+|+++.+. .||+|+||++|+++. .|++.+.++.
T Consensus 1240 iLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE-~Gth~eLl~~ 1305 (1321)
T 4f4c_A 1240 LLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIAVVSNGTIIE-KGTHTQLMSE 1305 (1321)
T ss_dssp EEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEEE-EECHHHHHHC
T ss_pred EEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEEE-ECCHHHHHhC
Confidence 99999999999999999999976 4899999999999996 499999999999854 5888887754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-39 Score=354.63 Aligned_cols=202 Identities=27% Similarity=0.376 Sum_probs=170.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+.++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+ ...|+|++|++...+
T Consensus 285 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~---~~~i~~v~Q~~~~~~ 360 (538)
T 1yqt_A 285 ETLVTYPRLVKDYGSF-RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW---DLTVAYKPQYIKADY 360 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---CCCEEEECSSCCCCC
T ss_pred CeEEEEeeEEEEECCE-EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---CceEEEEecCCcCCC
Confidence 4579999999999774 799999999999999999999999999999999999999999987 347999999987778
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+++...... .. .....+.++++.+|+. ...+
T Consensus 361 ~~tv~~~~~~~~~~----------------------------------------~~---~~~~~~~~~l~~~~l~-~~~~ 396 (538)
T 1yqt_A 361 EGTVYELLSKIDAS----------------------------------------KL---NSNFYKTELLKPLGII-DLYD 396 (538)
T ss_dssp SSBHHHHHHHHHHH----------------------------------------HH---TCHHHHHHTTTTTTCG-GGTT
T ss_pred CCcHHHHHHhhhcc----------------------------------------CC---CHHHHHHHHHHHcCCh-hhhc
Confidence 88997765321000 00 0124567789999996 5779
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||+|||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 397 ~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~ 476 (538)
T 1yqt_A 397 REVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFE 476 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999999888753 48999999999999999999999998
Q ss_pred C--CeEeeccCChHHHH
Q 008750 331 M--GVSRTYEGNYSQYV 345 (555)
Q Consensus 331 ~--G~~~~~~G~y~~~~ 345 (555)
+ |.+ ...|+..+..
T Consensus 477 ~~~~~~-~~~g~~~~~~ 492 (538)
T 1yqt_A 477 GEPGKY-GRALPPMGMR 492 (538)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-eecCCHHHHH
Confidence 5 443 3457665543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-39 Score=351.39 Aligned_cols=192 Identities=25% Similarity=0.328 Sum_probs=165.0
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+.++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+++. .++|++|+....+
T Consensus 267 ~~~l~~~~l~~~~~~~-~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~--~i~~~~q~~~~~~ 343 (538)
T 3ozx_A 267 KTKMKWTKIIKKLGDF-QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ--ILSYKPQRIFPNY 343 (538)
T ss_dssp CEEEEECCEEEEETTE-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC--CEEEECSSCCCCC
T ss_pred cceEEEcceEEEECCE-EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe--eeEeechhccccc
Confidence 4578999999999874 688889999999999999999999999999999999999999998754 6899999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+|+..... . ........+.++++.+|+. ...+
T Consensus 344 ~~tv~~~l~~~~~-----------------~-------------------------~~~~~~~~~~~~l~~~~l~-~~~~ 380 (538)
T 3ozx_A 344 DGTVQQYLENASK-----------------D-------------------------ALSTSSWFFEEVTKRLNLH-RLLE 380 (538)
T ss_dssp SSBHHHHHHHHCS-----------------S-------------------------TTCTTSHHHHHTTTTTTGG-GCTT
T ss_pred CCCHHHHHHHhhh-----------------h-------------------------ccchhHHHHHHHHHHcCCH-HHhc
Confidence 8899998743100 0 0001123467788999996 5679
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|+ +.|.|||+||||++++..+||||++|+
T Consensus 381 ~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~ 460 (538)
T 3ozx_A 381 SNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFK 460 (538)
T ss_dssp SBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 9999999999999999999999999999999999999999998888774 358999999999999999999999998
Q ss_pred CC
Q 008750 331 MG 332 (555)
Q Consensus 331 ~G 332 (555)
++
T Consensus 461 ~~ 462 (538)
T 3ozx_A 461 GE 462 (538)
T ss_dssp EE
T ss_pred CC
Confidence 63
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=355.97 Aligned_cols=202 Identities=27% Similarity=0.373 Sum_probs=170.3
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
..+++++|+++.|++. .|+++||+|++||++||+|+||||||||+|+|+|+++|++|+|.+. ..|+|+||++...+
T Consensus 355 ~~~l~~~~l~~~~~~~-~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~---~~i~~v~Q~~~~~~ 430 (607)
T 3bk7_A 355 ETLVEYPRLVKDYGSF-KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD---LTVAYKPQYIKAEY 430 (607)
T ss_dssp CEEEEECCEEEECSSC-EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC---CCEEEECSSCCCCC
T ss_pred ceEEEEeceEEEecce-EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe---eEEEEEecCccCCC
Confidence 4579999999999764 7999999999999999999999999999999999999999999873 47999999987778
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+++....... .....++.++++.+|+. ...+
T Consensus 431 ~~tv~e~~~~~~~~~-------------------------------------------~~~~~~~~~~l~~~~l~-~~~~ 466 (607)
T 3bk7_A 431 EGTVYELLSKIDSSK-------------------------------------------LNSNFYKTELLKPLGII-DLYD 466 (607)
T ss_dssp SSBHHHHHHHHHHHH-------------------------------------------HHCHHHHHHTHHHHTCT-TTTT
T ss_pred CCcHHHHHHhhhccC-------------------------------------------CCHHHHHHHHHHHcCCc-hHhc
Confidence 889987764210000 00123467788899996 5779
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 467 ~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~ 546 (607)
T 3bk7_A 467 RNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE 546 (607)
T ss_dssp SBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc
Confidence 99999999999999999999999999999999999999999998888753 58999999999999999999999998
Q ss_pred C--CeEeeccCChHHHH
Q 008750 331 M--GVSRTYEGNYSQYV 345 (555)
Q Consensus 331 ~--G~~~~~~G~y~~~~ 345 (555)
+ |.+ ...|...+..
T Consensus 547 ~~~g~~-~~~g~p~~~~ 562 (607)
T 3bk7_A 547 GEPGRH-GRALPPMGMR 562 (607)
T ss_dssp EETTTE-EEECCCEEHH
T ss_pred CCcceE-EecCCHHHHH
Confidence 5 443 3456665543
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-39 Score=367.11 Aligned_cols=245 Identities=23% Similarity=0.380 Sum_probs=176.1
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccccc
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
.++|+++||+|+|++ +++|+||||+|.+|+++||+|+||||||||+|+|+|+++|++|+|.+++ +..|+|++|++..
T Consensus 669 ~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~-~~~I~yv~Q~~~~ 747 (986)
T 2iw3_A 669 KAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHE-NCRIAYIKQHAFA 747 (986)
T ss_dssp SEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECT-TCCEEEECHHHHH
T ss_pred CceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcC-ccceEeeccchhh
Confidence 467999999999975 5799999999999999999999999999999999999999999999986 3579999998632
Q ss_pred ----CcCccHHHHHHHhhHHHHHHHHHHHHHHHHH---------------------------------------------
Q 008750 173 ----SMSRTVREEFMSAFKEEMEIAGKLERVQKAL--------------------------------------------- 203 (555)
Q Consensus 173 ----~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------------- 203 (555)
....|+.+++...+....+.. ........+
T Consensus 748 ~l~~~~~~t~~e~i~~~~q~g~d~~-~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~EN 826 (986)
T 2iw3_A 748 HIESHLDKTPSEYIQWRFQTGEDRE-TMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN 826 (986)
T ss_dssp HGGGCTTSCHHHHHHHHTTTSSCTT-TTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEES
T ss_pred hhhcccccCHHHHHHHHhhccchhh-hhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhhhhhhhhh
Confidence 234688887653221000000 000000000
Q ss_pred --------------hhccccHH-H---HHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc-cCCCCCCCChHH
Q 008750 204 --------------ESAVDDMD-L---MGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD-GDRLVASFSSGW 264 (555)
Q Consensus 204 --------------~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~-~~~~~~~LSGGq 264 (555)
++...+.. . ...+..+++................++.++|+.+||.... .++++.+|||||
T Consensus 827 i~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~~~LSGGQ 906 (986)
T 2iw3_A 827 IGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRIRGLSGGQ 906 (986)
T ss_dssp TTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCGGGCCHHH
T ss_pred hhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCccccCHHH
Confidence 00000000 0 0000001110000001111223356789999999997544 578899999999
Q ss_pred HHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEeeccCCh
Q 008750 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTYEGNY 341 (555)
Q Consensus 265 rqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~~~~G~y 341 (555)
||||+|||||+.+|+||||||||++||+.+...+.+.|++.+.|||+||||++++..+||+|++|++|++.....+|
T Consensus 907 kQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~g~tVIiISHD~e~v~~l~DrVivL~~G~Iv~~G~~~ 983 (986)
T 2iw3_A 907 KVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEFEGGVIIITHSAEFTKNLTEEVWAVKDGRMTPSGHNW 983 (986)
T ss_dssp HHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSCSSEEEEECSCHHHHTTTCCEEECCBTTBCCC-----
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCcc
Confidence 99999999999999999999999999999999999999988899999999999999999999999999875433333
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=384.53 Aligned_cols=215 Identities=23% Similarity=0.394 Sum_probs=166.4
Q ss_pred CccEEEEeEEEEeCCc---eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
.+.|+++||+|+|++. ++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~ 1107 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRA 1107 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTT
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHh
Confidence 4569999999999753 699999999999999999999999999999999999999999999998653
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+|+||||++.+ +..||+||+..+.... ..+.+.+.. ... ...+.+
T Consensus 1108 ~i~~v~Q~~~l-~~~ti~eNi~~~~~~~-----------------~~~~~~i~~----------~~~-------~~~~~~ 1152 (1284)
T 3g5u_A 1108 QLGIVSQEPIL-FDCSIAENIAYGDNSR-----------------VVSYEEIVR----------AAK-------EANIHQ 1152 (1284)
T ss_dssp SCEEEESSCCC-CSSBHHHHHTCCCSSC-----------------CCCHHHHHH----------HHH-------HHTCHH
T ss_pred ceEEECCCCcc-ccccHHHHHhccCCCC-----------------CCCHHHHHH----------HHH-------HhCcHH
Confidence 59999999976 6789999986431100 000000000 000 000111
Q ss_pred Hhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHH
Q 008750 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~ 317 (555)
.+..+ |++. .......+|||||||||+|||||+.+|+||||||||++||+.+.+.+.+.|++ .|+|+|+||||++
T Consensus 1153 ~i~~l~~gldt-~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~ 1231 (1284)
T 3g5u_A 1153 FIDSLPDKYNT-RVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLS 1231 (1284)
T ss_dssp HHSSTTTGGGC-BCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTT
T ss_pred HHHhCcccccc-ccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHH
Confidence 12221 2221 12334568999999999999999999999999999999999999999988853 5899999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
++. .||||++|++|++. ..|+++++...
T Consensus 1232 ~i~-~~dri~vl~~G~i~-~~g~~~~l~~~ 1259 (1284)
T 3g5u_A 1232 TIQ-NADLIVVIQNGKVK-EHGTHQQLLAQ 1259 (1284)
T ss_dssp GGG-SCSEEEEEETBEEE-EEECHHHHHHS
T ss_pred HHH-cCCEEEEEECCEEE-EECCHHHHHhC
Confidence 995 59999999999974 56888877654
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-37 Score=337.26 Aligned_cols=198 Identities=23% Similarity=0.298 Sum_probs=164.1
Q ss_pred EeEEEEeCC-ceeeeeeeEEEECC-----CEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc
Q 008750 101 ENISKSYKG-VTVLKDVTWEVKKG-----EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM 174 (555)
Q Consensus 101 ~nls~~y~~-~~vL~~vsl~i~~G-----e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~ 174 (555)
.+++++|++ ..+++++||++.+| |++||+|+||||||||+++|+|+++|++|+.. ....++|++|+....+
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~---~~~~i~~~~q~~~~~~ 426 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI---PKLNVSMKPQKIAPKF 426 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC---CSCCEEEECSSCCCCC
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc---cCCcEEEecccccccC
Confidence 678889976 46899999999999 88999999999999999999999999999842 2357999999987777
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
..||.+++..... ........+.++++.+|+. ...+
T Consensus 427 ~~tv~e~~~~~~~-------------------------------------------~~~~~~~~~~~~l~~l~l~-~~~~ 462 (608)
T 3j16_B 427 PGTVRQLFFKKIR-------------------------------------------GQFLNPQFQTDVVKPLRID-DIID 462 (608)
T ss_dssp CSBHHHHHHHHCS-------------------------------------------STTTSHHHHHHTHHHHTST-TTSS
T ss_pred CccHHHHHHHHhh-------------------------------------------cccccHHHHHHHHHHcCCh-hhhc
Confidence 7899887642110 0001123456678888986 5679
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecCHHHHHhhcceeEEec
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
+++.+|||||||||+|||||+.+|+||||||||++||+.++..+.++|++ .|.|||+||||++++..+||||++|+
T Consensus 463 ~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~ 542 (608)
T 3j16_B 463 QEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFE 542 (608)
T ss_dssp SBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECE
T ss_pred CChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEe
Confidence 99999999999999999999999999999999999999999888877643 58999999999999999999999998
Q ss_pred C--CeEeeccCChHHHHH
Q 008750 331 M--GVSRTYEGNYSQYVL 346 (555)
Q Consensus 331 ~--G~~~~~~G~y~~~~~ 346 (555)
+ |++ .+.|...+...
T Consensus 543 ~~~g~~-~~~g~p~~~~~ 559 (608)
T 3j16_B 543 GIPSKN-AHARAPESLLT 559 (608)
T ss_dssp EETTTE-EECCCCEEHHH
T ss_pred CCCCeE-EecCChHHHhh
Confidence 6 654 56677666554
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=340.47 Aligned_cols=181 Identities=19% Similarity=0.243 Sum_probs=139.6
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHH---cCCCce
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYL---GKQDVP 308 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l---~~~~~t 308 (555)
++..++. .|..+||.....++++.+|||||+|||+||++|+.+|+ +|||||||++||+...++|.+.| ++.|.|
T Consensus 355 ei~~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~T 433 (842)
T 2vf7_A 355 DLVKRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNS 433 (842)
T ss_dssp HHHHHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCE
Confidence 4566666 68899997555799999999999999999999999995 99999999999999999988865 567999
Q ss_pred EEEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 008750 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (555)
||+||||++++. .||+|++| ++|+ +++.|+|+++....+... ...+. .
T Consensus 434 VIvVeHdl~~l~-~aD~ii~lgpgaG~~~G~-iv~~g~~~~~~~~~~~~~-----------------~~~l~---~---- 487 (842)
T 2vf7_A 434 LFVVEHDLDVIR-RADWLVDVGPEAGEKGGE-ILYSGPPEGLKHVPESQT-----------------GQYLF---A---- 487 (842)
T ss_dssp EEEECCCHHHHT-TCSEEEEECSSSGGGCCS-EEEEECGGGGGGCTTCHH-----------------HHHHH---T----
T ss_pred EEEEcCCHHHHH-hCCEEEEeCCCcccCCCE-EEEecCHHHHHhchHHHH-----------------HHHhh---h----
Confidence 999999999885 79999999 4565 478899988754211000 00000 0
Q ss_pred hhHHHHHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCc
Q 008750 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCG 462 (555)
Q Consensus 383 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsG 462 (555)
. ...+ . .....++.+|+++++++ ..|+++||+|++||+++|+|+||||
T Consensus 488 ----------------~-~~~~--~--------~~~~~~~~~L~v~~l~~-----~~L~~vsl~i~~Geiv~I~G~nGSG 535 (842)
T 2vf7_A 488 ----------------D-RHTE--P--------HTPREPAGWLELNGVTR-----NNLDNLDVRFPLGVMTSVTGVSGSG 535 (842)
T ss_dssp ----------------C-CCCC--C--------CCCCCCSCEEEEEEEEE-----TTEEEEEEEEESSSEEEEECCTTSS
T ss_pred ----------------c-cccc--c--------cccCCCCceEEEEeeee-----cccccceEEEcCCCEEEEEcCCCcC
Confidence 0 0000 0 00113456899999986 2699999999999999999999999
Q ss_pred HHHHHHH-HhCC
Q 008750 463 KSTLLKL-IMGL 473 (555)
Q Consensus 463 KSTLlk~-L~G~ 473 (555)
||||+++ |+|.
T Consensus 536 KSTLl~~~L~g~ 547 (842)
T 2vf7_A 536 KSTLVSQALVDA 547 (842)
T ss_dssp HHHHCCCCCHHH
T ss_pred HHHHHHHHHHHH
Confidence 9999996 6644
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-35 Score=333.65 Aligned_cols=173 Identities=19% Similarity=0.306 Sum_probs=130.0
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEe
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIIS 313 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiS 313 (555)
..+.|..+||.....++++.+|||||+|||+|||||+.+|+ +|||||||++||+...++|.+.|+ +.|.|||+||
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivVt 523 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVVE 523 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 34578889997555789999999999999999999999887 999999999999999999988875 4589999999
Q ss_pred cCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 008750 314 HDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (555)
Q Consensus 314 Hd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (555)
||++++.. ||+|++| ++|++ ++.|+++++........ .....
T Consensus 524 Hd~~~~~~-aD~ii~lgpgag~~~G~i-v~~G~~~e~~~~~~~~~----------------~~~~l-------------- 571 (916)
T 3pih_A 524 HDEEVIRN-ADHIIDIGPGGGTNGGRV-VFQGTVDELLKNPDSSL----------------TGEYL-------------- 571 (916)
T ss_dssp CCHHHHHT-CSEEEEEESSSGGGCSEE-EEEECHHHHHHSCTTCH----------------HHHHH--------------
T ss_pred CCHHHHHh-CCEEEEEcCCcccCCCEE-EEeechhhhhcCchhcc----------------hhhhh--------------
Confidence 99999975 9999999 67765 68899887653210000 00000
Q ss_pred HHHHHHHHHHhhhhcCccccccceeeccCCCCCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHH
Q 008750 388 AEKKLERLQEEEQIEKPFQRKQMKIRFPERGRSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLL 467 (555)
Q Consensus 388 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLl 467 (555)
.. ... +..+...+.....+++++++ ...|+++||+|+.|++++|+|+||||||||+
T Consensus 572 --------~~----~~~-------~~~~~~~~~~~~~l~v~~~~-----~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 572 --------SG----KRK-------ITVNKTRRLPYASLKIKGVR-----HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp --------HS----SSC-------CCCCSSCCCCSSEEEEEEEC-----STTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred --------hc----ccc-------cccccccccccceEEEeeec-----cccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 00 000 00011111123346676664 2469999999999999999999999999997
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-36 Score=339.56 Aligned_cols=180 Identities=18% Similarity=0.262 Sum_probs=136.6
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc---CCCce
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVP 308 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~t 308 (555)
++..++ +.|..+||....+++++.+|||||+|||+||++|..+| ++|||||||++||+...++|.+.|+ +.|.|
T Consensus 480 ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~T 558 (972)
T 2r6f_A 480 EIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNT 558 (972)
T ss_dssp HHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCE
T ss_pred HHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCE
Confidence 345555 45899999755579999999999999999999999985 9999999999999999999988764 57999
Q ss_pred EEEEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch
Q 008750 309 MVIISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANS 382 (555)
Q Consensus 309 vIiiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (555)
||+|+||++++. .||+|++| ++|+ +++.|+++++....+. ..
T Consensus 559 VIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~-iv~~G~~~e~~~~~~s------------------------------lt 606 (972)
T 2r6f_A 559 LIVVEHDEDTML-AADYLIDIGPGAGIHGGE-VVAAGTPEEVMNDPNS------------------------------LT 606 (972)
T ss_dssp EEEECCCHHHHH-SCSEEEEECSSSGGGCCS-EEEEECTTTTTTCTTC------------------------------TT
T ss_pred EEEEecCHHHHH-hCCEEEEeCCCccCCCCE-EEEecCHHHHHhhhHH------------------------------HH
Confidence 999999999986 69999999 4565 4788998876531100 00
Q ss_pred hhHHHHHHHHHHHHHhhhhcCccccccceeeccCCC-CCCCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCC
Q 008750 383 GRASSAEKKLERLQEEEQIEKPFQRKQMKIRFPERG-RSGRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGC 461 (555)
Q Consensus 383 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGs 461 (555)
++ . +... ...+ .+... ...+++|++++++. ..|+++||+|+.||+++|+|+|||
T Consensus 607 ~~------~---l~g~--~~~~---------~~~~~~~~~~~~L~v~~l~~-----~~Lk~Vsl~I~~Geiv~I~G~nGS 661 (972)
T 2r6f_A 607 GQ------Y---LSGK--KFIP---------IPAERRRPDGRWLEVVGARE-----HNLKNVSVKIPLGTFVAVTGVSGS 661 (972)
T ss_dssp HH------H---HHTS--SCCC---------CCSSCCCCCSCEEEEEEECS-----SSCCSEEEEEESSSEEECCBCTTS
T ss_pred HH------H---hcCC--cccc---------CccccccccceEEEEecCcc-----cccccceEEEcCCCEEEEEcCCCC
Confidence 00 0 0000 0000 01111 12246899999873 369999999999999999999999
Q ss_pred cHHHHHHHHh
Q 008750 462 GKSTLLKLIM 471 (555)
Q Consensus 462 GKSTLlk~L~ 471 (555)
|||||+++|+
T Consensus 662 GKSTLl~~ll 671 (972)
T 2r6f_A 662 GKSTLVNEVL 671 (972)
T ss_dssp SHHHHHTTTH
T ss_pred CHHHHHHHHH
Confidence 9999999854
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-32 Score=306.00 Aligned_cols=107 Identities=21% Similarity=0.286 Sum_probs=91.9
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCC---EEEEcCCCCCCCHHHHHHHHHHHc---CCCceEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~---lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvI 310 (555)
.++.+.+..+|+.....++++.+|||||||||+|||||+.+|+ ||||||||++||+.+...+.++|+ +.|.|||
T Consensus 521 ~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi 600 (670)
T 3ux8_A 521 KRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVL 600 (670)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEE
Confidence 3456678889987556789999999999999999999999875 999999999999999998888764 3589999
Q ss_pred EEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~ 345 (555)
+||||++++. .||||++| ++|++ ++.|+..+..
T Consensus 601 ~vtHd~~~~~-~~d~i~~l~~~~g~~~G~i-~~~g~~~~~~ 639 (670)
T 3ux8_A 601 VIEHNLDVIK-TADYIIDLGPEGGDRGGQI-VAVGTPEEVA 639 (670)
T ss_dssp EECCCHHHHT-TCSEEEEEESSSGGGCCEE-EEEECHHHHH
T ss_pred EEeCCHHHHH-hCCEEEEecCCcCCCCCEE-EEecCHHHHH
Confidence 9999999984 69999999 78986 5678777654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-34 Score=317.56 Aligned_cols=323 Identities=12% Similarity=0.076 Sum_probs=188.8
Q ss_pred cEEEEeEEEEeCCceeeeeeeE-EEECCCEEEEEcCCCccHHHHHHH--HHcCCCCCceEEEEcCCCc---------eEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRI--IAGQEEPDSGNVIKAKSNM---------KIA 164 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLlk~--i~G~~~p~~G~I~~~g~~~---------~ig 164 (555)
.++.+++.+.+++.++|++||| .|++|++++|+|+||||||||+++ ++|+++|++|.|+++|.+. .+|
T Consensus 12 ~~~~~~~~~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~~~~~~~~~g 91 (525)
T 1tf7_A 12 NSEHQAIAKMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQDIIKNARSFG 91 (525)
T ss_dssp --CCSSCCEECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHHHHHHHGGGT
T ss_pred CccccccccccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcC
Confidence 3555666655567889999999 999999999999999999999999 7899999999999987541 233
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|++|++....+ +. .+.... .....++++
T Consensus 92 ~~~q~~~~~~~------l~---------------------------------------------~~~~~~-~~~~~~~l~ 119 (525)
T 1tf7_A 92 WDLAKLVDEGK------LF---------------------------------------------ILDASP-DPEGQEVVG 119 (525)
T ss_dssp CCHHHHHHTTS------EE---------------------------------------------EEECCC-CSSCCSCCS
T ss_pred CChHHhhccCc------EE---------------------------------------------EEecCc-ccchhhhhc
Confidence 44433221000 00 000000 000011222
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCC-----CCHHHHHHHHHHH---cCCCceEEEEecCH
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-----LDLDTIEWLEGYL---GKQDVPMVIISHDR 316 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~-----LD~~~~~~l~~~l---~~~~~tvIiiSHd~ 316 (555)
.+++. ...++.+..|||| +|++++|||||+. ||+..++.+.+++ ++.|.|||+||||+
T Consensus 120 ~~~l~-~~~~~~~~~LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~ 185 (525)
T 1tf7_A 120 GFDLS-ALIERINYAIQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERI 185 (525)
T ss_dssp SHHHH-HHHHHHHHHHHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECS
T ss_pred ccCHH-HHHHHHHHHHHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 23322 1233444455555 5889999999985 5888888877765 34699999999999
Q ss_pred HH---------HHhhcceeEEecCCeEeeccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchhhHHH
Q 008750 317 AF---------LDQLCTKIVETEMGVSRTYEGNYSQYVLEKAAWIESQYAAWEKQQREIEQTKDLINRLGAGANSGRASS 387 (555)
Q Consensus 317 ~~---------l~~~~dri~~l~~G~~~~~~G~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (555)
++ +..+||+|++|++|.. .|....++. +.++. +....
T Consensus 186 ~~~~~~~~~~i~~~laD~vi~L~~~~~---~G~~~r~l~--------------------------~~k~r-~~~~~---- 231 (525)
T 1tf7_A 186 EEYGPIARYGVEEFVSDNVVILRNVLE---GERRRRTLE--------------------------ILKLR-GTSHM---- 231 (525)
T ss_dssp SSSSCSSTTSCHHHHCSEEEEEEEECS---TTCCEEEEE--------------------------EEEET-TSCCC----
T ss_pred CCccccccccceeeeeeEEEEEEEEcc---CCceeEEEE--------------------------EEECC-CCCCC----
Confidence 88 4667999999998532 122110000 00000 00000
Q ss_pred HHHHHHHHHHhhhhcCccccccceee-ccCCCCCCCceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHH
Q 008750 388 AEKKLERLQEEEQIEKPFQRKQMKIR-FPERGRSGRSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKST 465 (555)
Q Consensus 388 ~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKST 465 (555)
....++......+. ++......++.++++++++.|++ ..+| +..|.+|++++|+|+|||||||
T Consensus 232 ------------~~~~~~~i~~~gi~v~p~~~~~~~~~~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKST 296 (525)
T 1tf7_A 232 ------------KGEYPFTITDHGINIFPLGAMRLTQRSSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTL 296 (525)
T ss_dssp ------------CSEEEEEEETTEEEECCTTTCCSCCCCCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHH
T ss_pred ------------CceEEEEEcCCCEEEEeccccccccccccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHH
Confidence 00000000000000 11111123345678888876643 1233 4589999999999999999999
Q ss_pred HHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCC
Q 008750 466 LLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLS 545 (555)
Q Consensus 466 Llk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LS 545 (555)
|++.|+|...|. |. .+ ..|.+|++.. .+..+.... .+...+ +..+++. ...++++..||
T Consensus 297 Ll~~l~g~~~~~-G~------~v-i~~~~ee~~~------~l~~~~~~~--g~~~~~----~~~~g~~-~~~~~~p~~LS 355 (525)
T 1tf7_A 297 LVSRFVENACAN-KE------RA-ILFAYEESRA------QLLRNAYSW--GMDFEE----MERQNLL-KIVCAYPESAG 355 (525)
T ss_dssp HHHHHHHHHHTT-TC------CE-EEEESSSCHH------HHHHHHHTT--SCCHHH----HHHTTSE-EECCCCGGGSC
T ss_pred HHHHHHHHHHhC-CC------CE-EEEEEeCCHH------HHHHHHHHc--CCCHHH----HHhCCCE-EEEEeccccCC
Confidence 999999998875 42 11 2234554311 223332211 222222 2233332 34567889999
Q ss_pred hhHHhchhcC
Q 008750 546 GGEKVNQTLV 555 (555)
Q Consensus 546 GGek~Rv~La 555 (555)
|||+||+++|
T Consensus 356 ~g~~q~~~~a 365 (525)
T 1tf7_A 356 LEDHLQIIKS 365 (525)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-31 Score=297.54 Aligned_cols=107 Identities=18% Similarity=0.238 Sum_probs=94.1
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccC---CCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD---PDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~---p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvI 310 (555)
.++.++|+.+||.....++++.+|||||||||+||++|+.+ |+||||||||+|||+..++.|.++|+ +.|.|||
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 46788999999975556899999999999999999999996 79999999999999999999888764 4699999
Q ss_pred EEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHH
Q 008750 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYV 345 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~ 345 (555)
+||||++++ .+||+|++| ++|++ ++.|++.++.
T Consensus 788 visHdl~~i-~~aDrii~L~p~~g~~~G~I-v~~g~~~el~ 826 (842)
T 2vf7_A 788 AVEHKMQVV-AASDWVLDIGPGAGEDGGRL-VAQGTPAEVA 826 (842)
T ss_dssp EECCCHHHH-TTCSEEEEECSSSGGGCCSE-EEEECHHHHT
T ss_pred EEcCCHHHH-HhCCEEEEECCCCCCCCCEE-EEEcCHHHHH
Confidence 999999999 789999999 57776 5678877654
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-34 Score=305.97 Aligned_cols=195 Identities=12% Similarity=0.069 Sum_probs=157.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce-E-EEEcCC-CceEEEEecccc
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-N-VIKAKS-NMKIAFLSQEFE 171 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~-I~~~g~-~~~ig~v~Q~~~ 171 (555)
.++++++||+|.|+ ++||+|++|++++|+|+||||||||+|+|+|++.|++| + |.+++. ...++|+||++.
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 46789999999985 79999999999999999999999999999999999999 9 999873 235899999985
Q ss_pred cC---cCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 172 VS---MSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 172 ~~---~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++ ...|+.+|+ .... . ........++..++..+|+
T Consensus 190 l~~~~~~~tv~eni-~~~~-----------------~------------------------~~~~~~~~~~~~ll~~~gl 227 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQS-----------------L------------------------TSGATLLHNKQPMVKNFGL 227 (460)
T ss_dssp EEECCSCCCTTCTT-CSCB-----------------C------------------------BSSCCSSCCBCCEECCCCS
T ss_pred hcccccccchhhhh-cccc-----------------c------------------------ccCcchHHHHHHHHHHhCC
Confidence 42 345777665 2110 0 0000011234557888898
Q ss_pred CccccCCCCCCCChHHHHHHHHHHH--hccCCCE----EEEcC-CCCCCCHHHHHHHHHHHcCCCceEEEEecCHH----
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKI--LLQDPDL----LLLDE-PTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA---- 317 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAra--L~~~p~l----LlLDE-PTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~---- 317 (555)
... .+ +.+|||||||||+|||| |+.+|++ ||||| ||++||+. .+.|.+++++.+.|+|+|+||..
T Consensus 228 ~~~-~~--~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~~~tviiVth~~~~~l~ 303 (460)
T 2npi_A 228 ERI-NE--NKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKLNVNIMLVLCSETDPLW 303 (460)
T ss_dssp SSG-GG--CHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHTTCCEEEEECCSSCTHH
T ss_pred Ccc-cc--hhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHhCCCEEEEEccCchhhh
Confidence 643 33 77999999999999999 9999999 99999 99999999 88888888888999999999987
Q ss_pred --HHHhhcce-----eEEec-CCeEeeccCChHH
Q 008750 318 --FLDQLCTK-----IVETE-MGVSRTYEGNYSQ 343 (555)
Q Consensus 318 --~l~~~~dr-----i~~l~-~G~~~~~~G~y~~ 343 (555)
++..+||+ |++|+ +|+++ .|+..+
T Consensus 304 ~~~~~~~~dr~~~~~vi~l~k~G~iv--~g~~~~ 335 (460)
T 2npi_A 304 EKVKKTFGPELGNNNIFFIPKLDGVS--AVDDVY 335 (460)
T ss_dssp HHHHHHHHHHHCGGGEEEECCCTTCC--CCCHHH
T ss_pred HHHHHHhcccccCCEEEEEeCCCcEE--ECCHHH
Confidence 88899999 99999 99875 676543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-29 Score=269.89 Aligned_cols=224 Identities=13% Similarity=0.124 Sum_probs=143.5
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC--------------------------------------CCce
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE--------------------------------------PDSG 152 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--------------------------------------p~~G 152 (555)
.+|++++|+|.+| +++|+|+||||||||+++|+++.. +..|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 5899999999999 999999999999999999977764 4478
Q ss_pred EEEEcCCCc-----------eEEEEecccccCcCc-cHHHHHHHhhHH-----HHHHHHHHHHHHHHHhhcccc------
Q 008750 153 NVIKAKSNM-----------KIAFLSQEFEVSMSR-TVREEFMSAFKE-----EMEIAGKLERVQKALESAVDD------ 209 (555)
Q Consensus 153 ~I~~~g~~~-----------~ig~v~Q~~~~~~~~-tv~e~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~------ 209 (555)
++.++|.+. .+++++|+..+.... ..+-.++..+.. ..........+..........
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 899988643 289999987654321 111122221110 000011111111111000000
Q ss_pred --------HHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcccc----------------------C-----
Q 008750 210 --------MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDG----------------------D----- 254 (555)
Q Consensus 210 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~----------------------~----- 254 (555)
.+.....+.+...............+...+.+.+..++++.... .
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 00000000000000000001112334556777788777653110 0
Q ss_pred --CCCCC-CChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeE
Q 008750 255 --RLVAS-FSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 255 --~~~~~-LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
+++.. |||||||||+||++|+.+| ++|||||||++||+.++.+|.++|++ .|.|||+||||++++ .+||+++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~~~d~i~ 366 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-ARAHHHY 366 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-hhcCeEE
Confidence 33333 6999999999999999999 99999999999999999999999875 379999999999887 5799999
Q ss_pred Ee----cCCeEee
Q 008750 328 ET----EMGVSRT 336 (555)
Q Consensus 328 ~l----~~G~~~~ 336 (555)
+| ++|++..
T Consensus 367 ~l~k~~~~G~~~~ 379 (415)
T 4aby_A 367 KVEKQVEDGRTVS 379 (415)
T ss_dssp EEEEEEETTEEEE
T ss_pred EEEEeccCCceEE
Confidence 99 8888644
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=286.43 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=92.7
Q ss_pred HHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC---CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE
Q 008750 238 KVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI 311 (555)
Q Consensus 238 ~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p---~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi 311 (555)
++.++|+.+||.....++++.+|||||||||+||++|+.+| +||||||||+|||+.++..|.++|+ +.|.|||+
T Consensus 824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 45678999999754678999999999999999999999875 9999999999999999999888774 46899999
Q ss_pred EecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHH
Q 008750 312 ISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 312 iSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~ 346 (555)
||||++++ ..||+|++| ++|++ ++.|+..++..
T Consensus 904 isHdl~~i-~~aDrIivL~p~gG~~~G~I-v~~g~~~el~~ 942 (972)
T 2r6f_A 904 IEHNLDVI-KTADYIIDLGPEGGDRGGQI-VAVGTPEEVAE 942 (972)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSTTSCCSE-EEEESHHHHHT
T ss_pred EcCCHHHH-HhCCEEEEEcCCCCCCCCEE-EEecCHHHHHh
Confidence 99999998 579999999 57776 56788776653
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-29 Score=286.32 Aligned_cols=108 Identities=19% Similarity=0.312 Sum_probs=93.8
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCC---CEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDP---DLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p---~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvI 310 (555)
.++.++|..+||.....++++.+|||||||||+|||+|+.+| +||||||||+|||+..++.|.+.|+ +.|.|||
T Consensus 783 ~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 783 KRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 466788999999765678899999999999999999999876 6999999999999999999988775 4699999
Q ss_pred EEecCHHHHHhhcceeEEe------cCCeEeeccCChHHHHH
Q 008750 311 IISHDRAFLDQLCTKIVET------EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l------~~G~~~~~~G~y~~~~~ 346 (555)
+||||++++.. ||+|++| ++|++ ++.|+..+...
T Consensus 863 vI~HdL~~i~~-ADrIivLgp~gg~~~G~I-v~~Gtpeel~~ 902 (916)
T 3pih_A 863 VIEHNLDVIKN-ADHIIDLGPEGGKEGGYI-VATGTPEEIAK 902 (916)
T ss_dssp EECCCHHHHTT-CSEEEEEESSSGGGCCEE-EEEESHHHHHS
T ss_pred EEeCCHHHHHh-CCEEEEecCCCCCCCCEE-EEEcCHHHHHh
Confidence 99999999964 9999999 77876 57788776543
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.5e-27 Score=247.99 Aligned_cols=81 Identities=23% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCCCCCCChHHHHHHHHHHHhc------cCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhcc
Q 008750 254 DRLVASFSSGWQMRMSLGKILL------QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~------~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~d 324 (555)
++++.+|||||||||+||+||+ .+|++|||||||++||+....++.++|++ .|.|||+||||++++ ..||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~-~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFS-EAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHH-TTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCC
Confidence 5788999999999999999999 79999999999999999999999888753 589999999999985 6799
Q ss_pred eeEEecCCeEe
Q 008750 325 KIVETEMGVSR 335 (555)
Q Consensus 325 ri~~l~~G~~~ 335 (555)
+|++|++|+++
T Consensus 353 ~~~~l~~G~i~ 363 (365)
T 3qf7_A 353 RKLRITGGVVV 363 (365)
T ss_dssp CEEEEETTEEC
T ss_pred EEEEEECCEEE
Confidence 99999999864
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=231.07 Aligned_cols=132 Identities=27% Similarity=0.429 Sum_probs=112.6
Q ss_pred CceEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 422 RSVVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
++.|+++|+++.|++ ..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 5 ~~~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 5 DYILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp CEEEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred CcEEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 357999999999975 4599999999999999999999999999999999999999999999998765
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++...++ ..||.+++..... ... .+.+..+|..+++. +..++++..|||||||||+||
T Consensus 85 ~ig~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~iA 155 (275)
T 3gfo_A 85 SIGIVFQDPDNQLF-SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIE-HLKDKPTHCLSFGQKKRVAIA 155 (275)
T ss_dssp SEEEECSSGGGTCC-SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccc-cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCCcccCCHHHHHHHHHH
Confidence 37899998743443 6899999986532 111 23578899999995 678999999999999999986
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-26 Score=224.99 Aligned_cols=129 Identities=29% Similarity=0.351 Sum_probs=111.7
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------~ 489 (555)
.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .
T Consensus 4 ~l~~~~l~~~y~~~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 83 (224)
T 2pcj_A 4 ILRAENIKKVIRGYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRK 83 (224)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHH
T ss_pred EEEEEeEEEEECCEeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCc
Confidence 68999999999888899999999999999999999999999999999999999999999988653 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .+++..||.|++..... .. ..+.+..+|..+++. +..++++..|||||||||+||
T Consensus 84 i~~v~q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~la 152 (224)
T 2pcj_A 84 LGFVFQFH--YLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLG-DKLSRKPYELSGGEQQRVAIA 152 (224)
T ss_dssp EEEECSSC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEecCc--ccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHH
Confidence 78999985 46678899999976421 11 124578899999995 568999999999999999986
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-26 Score=226.83 Aligned_cols=129 Identities=29% Similarity=0.371 Sum_probs=110.0
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------ 488 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------ 488 (555)
|+++|+++.|++ ..+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 789999999963 3589999999999999999999999999999999999999999999998654
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc-----cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.||+..... ... ...+..+|+.+++.....++++..|||||||||+||
T Consensus 82 ~~~i~~v~Q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iA 157 (235)
T 3tif_A 82 RDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (235)
T ss_dssp HHHEEEECTTC--CCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred hccEEEEecCC--ccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHH
Confidence 278999986 47788899999976421 111 245778999999975445899999999999999986
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-26 Score=239.08 Aligned_cols=129 Identities=28% Similarity=0.470 Sum_probs=114.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPN 491 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~ 491 (555)
.|+++|+++.|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++
T Consensus 4 ~l~i~~ls~~y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig 83 (359)
T 3fvq_A 4 ALHIGHLSKSFQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLG 83 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCE
T ss_pred EEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEE
Confidence 58999999999988899999999999999999999999999999999999999999999998765 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhccc------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAED------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.||+...... .....+..+|..+++. +..+++|..|||||||||+||
T Consensus 84 ~vfQ~~--~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 84 YLVQEG--VLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGIS-ELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp EECTTC--CCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEeCCC--cCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 999985 588999999999875321 1134578899999995 678999999999999999986
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-26 Score=220.01 Aligned_cols=129 Identities=26% Similarity=0.400 Sum_probs=111.8
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecC
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQN 496 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~ 496 (555)
...|+++|+++.|++ .+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 8 ~~~l~~~~ls~~y~~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~i~~v~q~ 86 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEE 86 (214)
T ss_dssp -CEEEEEEEEEESSS-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSS
T ss_pred CceEEEEEEEEEeCC-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhhhhcCcEEEEeCC
Confidence 357999999999988 899999999999999999999999999999999999999999999998654 47899998
Q ss_pred CccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..||.|++..... ......+..+|..+++.. . ++++..|||||||||+||
T Consensus 87 ~--~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~la 145 (214)
T 1sgw_A 87 I--IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLA 145 (214)
T ss_dssp C--CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHH
T ss_pred C--cCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHH
Confidence 6 35677899999976421 123456888999999964 4 899999999999999986
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.2e-26 Score=227.77 Aligned_cols=129 Identities=26% Similarity=0.390 Sum_probs=112.1
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee------------eeE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------LPN 491 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------~~~ 491 (555)
.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 24 ~l~i~~l~~~y~~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~ 103 (263)
T 2olj_A 24 MIDVHQLKKSFGSLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVG 103 (263)
T ss_dssp SEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEE
T ss_pred eEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEE
Confidence 69999999999888899999999999999999999999999999999999999999999998654 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhc---ccCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+++..||.|++.... .... .+.+..+|..+++. +..++++..|||||||||+||
T Consensus 104 ~v~Q~~--~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~LSgGqkQRv~lA 171 (263)
T 2olj_A 104 MVFQRF--NLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLK-DKAHAYPDSLSGGQAQRVAIA 171 (263)
T ss_dssp EECSSC--CCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEeCCC--cCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 999985 4667889999997632 1111 23577899999995 578999999999999999986
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-26 Score=227.74 Aligned_cols=130 Identities=26% Similarity=0.353 Sum_probs=112.2
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-------------
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL------------- 489 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~------------- 489 (555)
+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred ceEEEeeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 3689999999998888999999999999999999999999999999999999999999999886542
Q ss_pred ----------eEEEecCCccCCCCCCCHHHHHHhhc---ccCc----HHHHHHHHhhCCCChhh-hccccCCCChhHHhc
Q 008750 490 ----------PNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADM-LDRKVSLLSGGEKVN 551 (555)
Q Consensus 490 ----------~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~~~~~~-~~~~~~~LSGGek~R 551 (555)
++|++|++ .+++..||.+++.... .... ...+..+|..+++. +. .++++..||||||||
T Consensus 85 ~~~~~~~~~~i~~v~Q~~--~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~-~~~~~~~~~~LSgGq~qR 161 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID-ERAQGKYPVHLSGGQQQR 161 (262)
T ss_dssp HHHHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCC-HHHHTSCGGGSCHHHHHH
T ss_pred hhhHHHHhcceEEEecCc--ccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCC-chhhcCCcccCCHHHHHH
Confidence 68999985 4678889999997632 1111 23577899999996 45 799999999999999
Q ss_pred hhcC
Q 008750 552 QTLV 555 (555)
Q Consensus 552 v~La 555 (555)
|+||
T Consensus 162 v~lA 165 (262)
T 1b0u_A 162 VSIA 165 (262)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9986
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.5e-29 Score=240.91 Aligned_cols=153 Identities=20% Similarity=0.196 Sum_probs=98.3
Q ss_pred EeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-------CCCceEEEEecccccCcCccH
Q 008750 106 SYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------KSNMKIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-------g~~~~ig~v~Q~~~~~~~~tv 178 (555)
+|+++.+|+|| ++|++++|+||||||||||+++|+|+ +|++|+|... .....+||+||++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~-------- 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL-------- 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC----------
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH--------
Confidence 46667799996 89999999999999999999999999 9999998431 0123588888875
Q ss_pred HHHH-HHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 179 REEF-MSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 179 ~e~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
.+|+ ... .... ..+. .. ....++.++++. |+
T Consensus 76 ~enl~~~~-~~~~----------~~~~------------------------~~---~~~~~~~~~l~~-gl--------- 107 (208)
T 3b85_A 76 NEKIDPYL-RPLH----------DALR------------------------DM---VEPEVIPKLMEA-GI--------- 107 (208)
T ss_dssp ----CTTT-HHHH----------HHHT------------------------TT---SCTTHHHHHHHT-TS---------
T ss_pred HHHHHHHH-HHHH----------HHHH------------------------Hh---ccHHHHHHHHHh-CC---------
Confidence 3333 110 0000 0000 00 001234444444 32
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
||||||+|||||+.+|++|||||||++ ++..+.++|++ .|.||| ||||++++.. +..+++|.
T Consensus 108 -----Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~ 171 (208)
T 3b85_A 108 -----VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGL 171 (208)
T ss_dssp -----EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC----------------CC
T ss_pred -----chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcH
Confidence 999999999999999999999999999 77777777764 478999 9999987753 33445553
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=3e-26 Score=230.84 Aligned_cols=134 Identities=20% Similarity=0.298 Sum_probs=112.2
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------- 489 (555)
+...|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 18 ~~~~l~~~~l~~~y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred CCceEEEEeEEEEECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 355799999999998888999999999999999999999999999999999999999999999986542
Q ss_pred -eEEEecCCccCCCCCCCHHHHHHhhcc-------cCc---HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 -PNYFEQNQAEALDLDKTVLETVAEAAE-------DWR---IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 -~~y~~Q~~~~~l~~~~tv~e~l~~~~~-------~~~---~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++...++...||.|++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~~~~LSgGqkqRv~lA 173 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMS-AKAQQYIGYLSTGEKQRVMIA 173 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 689999853234455799999975321 011 23577899999994 578999999999999999986
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-26 Score=226.24 Aligned_cols=131 Identities=29% Similarity=0.450 Sum_probs=114.2
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeE
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~ 491 (555)
...|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 9 ~~~l~~~~l~~~~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~ 88 (266)
T 4g1u_C 9 VALLEASHLHYHVQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRA 88 (266)
T ss_dssp CCEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEE
T ss_pred cceEEEEeEEEEeCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEE
Confidence 3579999999999988999999999999999999999999999999999999999999999998765 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc----cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE----DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~----~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .+.+..||.+++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 89 ~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 89 VMRQYS--ELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCL-ALAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp EECSCC--CCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCS-TTTTSBGGGCCHHHHHHHHHH
T ss_pred EEecCC--ccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHH
Confidence 999985 35567899999986542 12245678899999995 578899999999999999986
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.93 E-value=5e-26 Score=237.33 Aligned_cols=129 Identities=29% Similarity=0.461 Sum_probs=114.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~~r~ig~VfQ 82 (381)
T 3rlf_A 3 SVQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQ 82 (381)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSCEEEECT
T ss_pred EEEEEeEEEEECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHHHCCEEEEec
Confidence 48999999999988899999999999999999999999999999999999999999999998765 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.||+..... ... ...+..+|..+++. +..+++|..|||||||||+||
T Consensus 83 ~~--~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~p~~LSGGqrQRVaiA 145 (381)
T 3rlf_A 83 SY--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIG 145 (381)
T ss_dssp TC--CCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred CC--cCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhcCChhHCCHHHHHHHHHH
Confidence 85 58899999999976532 111 24578899999995 578999999999999999986
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-26 Score=223.65 Aligned_cols=131 Identities=24% Similarity=0.365 Sum_probs=111.3
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------ee
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LP 490 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~ 490 (555)
.+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .+
T Consensus 4 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 83 (240)
T 1ji0_A 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred CceEEEEeEEEEECCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCE
Confidence 3469999999999888899999999999999999999999999999999999999999999998654 27
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhc-c--cCc--HHHHHHHHhhCC-CChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAA-E--DWR--IDDIKGLLGRCN-FKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~--~~~--~~~~~~~L~~~~-~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.|++.... . ... ...+..++..++ +. +..++++..|||||||||+||
T Consensus 84 ~~v~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~-~~~~~~~~~LSgGq~qrv~lA 151 (240)
T 1ji0_A 84 ALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLK-ERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHH-TTTTSBSSSSCHHHHHHHHHH
T ss_pred EEEecCC--ccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHh-hHhcCChhhCCHHHHHHHHHH
Confidence 8999985 4667889999998653 1 111 234677888884 73 567899999999999999986
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-26 Score=237.30 Aligned_cols=90 Identities=19% Similarity=0.262 Sum_probs=76.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcce
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dr 325 (555)
..++++..||||||||++||++|+ .+|++|||||||++||+...+.+.+++++ .+.|+|+|||+.+. ..+||+
T Consensus 212 ~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~-~~~~d~ 290 (322)
T 1e69_A 212 RRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIV-MEAADL 290 (322)
T ss_dssp SCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTG-GGGCSE
T ss_pred cccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHH-HhhCce
Confidence 356778899999999999999997 68999999999999999999999988754 37899999999764 468998
Q ss_pred e--EEecCCeEeeccCChH
Q 008750 326 I--VETEMGVSRTYEGNYS 342 (555)
Q Consensus 326 i--~~l~~G~~~~~~G~y~ 342 (555)
+ ++|.+|...+...+.+
T Consensus 291 ~~~v~~~~g~s~~~~~~~~ 309 (322)
T 1e69_A 291 LHGVTMVNGVSAIVPVEVE 309 (322)
T ss_dssp EEEEEESSSCEEEEECCC-
T ss_pred EEEEEEeCCEEEEEEEEcc
Confidence 7 8889998766555444
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=233.46 Aligned_cols=133 Identities=29% Similarity=0.404 Sum_probs=115.4
Q ss_pred CCCceEEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------ee
Q 008750 420 SGRSVVTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LP 490 (555)
Q Consensus 420 ~~~~~l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~ 490 (555)
.|...|+++|+++.| ++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .+
T Consensus 10 ~~~~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~i 89 (355)
T 1z47_A 10 HGSMTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPPQKRNV 89 (355)
T ss_dssp -CCEEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGGGSSE
T ss_pred CCCceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCChhhCcE
Confidence 456789999999999 777899999999999999999999999999999999999999999999998665 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.||+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 90 g~v~Q~~--~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 90 GLVFQNY--ALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLE-SYANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEECGGG--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEecCc--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCCcccCCHHHHHHHHHH
Confidence 8999985 47789999999976432 111 24578899999995 578999999999999999986
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.5e-26 Score=225.19 Aligned_cols=130 Identities=25% Similarity=0.331 Sum_probs=112.2
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeE
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPN 491 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~ 491 (555)
+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 6 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 6 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred cEEEEeeeEEEECCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 469999999999888899999999999999999999999999999999999999999999998654 268
Q ss_pred EEecCCccCCCCCCCHHHHHHhhccc---------------Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhch
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAED---------------WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQ 552 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~---------------~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv 552 (555)
|++|++ .+++..||.|++...... .. ...+..+|..+++. +..++++..|||||||||
T Consensus 86 ~v~q~~--~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkQrv 162 (257)
T 1g6h_A 86 RTFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLV 162 (257)
T ss_dssp ECCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHH
T ss_pred EEccCC--ccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCc-hhhCCCchhCCHHHHHHH
Confidence 999985 356778999999764211 11 23577899999995 578999999999999999
Q ss_pred hcC
Q 008750 553 TLV 555 (555)
Q Consensus 553 ~La 555 (555)
+||
T Consensus 163 ~iA 165 (257)
T 1g6h_A 163 EIG 165 (257)
T ss_dssp HHH
T ss_pred HHH
Confidence 986
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=224.08 Aligned_cols=130 Identities=25% Similarity=0.324 Sum_probs=112.3
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEE
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYF 493 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~ 493 (555)
..|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++|+
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~i~~v 93 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYL 93 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEE
T ss_pred CeEEEEEEEEEECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccHHHHhhcEEEE
Confidence 469999999999888899999999999999999999999999999999999999999999998654 37899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+.+..||.|++..... ... ...+..+|..+++. +..++++..|||||||||+||
T Consensus 94 ~q~~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 94 PEEA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp CTTC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHH
T ss_pred cCCC--CCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 9985 36678899999976421 111 23577889999995 578999999999999999986
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-25 Score=233.30 Aligned_cols=132 Identities=27% Similarity=0.370 Sum_probs=112.9
Q ss_pred CCceEEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------
Q 008750 421 GRSVVTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------- 488 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------- 488 (555)
.++.|+++|+++.|++ ..+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 4568999999999964 3589999999999999999999999999999999999999999999998755
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|..|||||||||+||
T Consensus 101 ~~~r~~Ig~v~Q~~--~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-~~~~~~~~~LSGGqkQRVaIA 175 (366)
T 3tui_C 101 TKARRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIA 175 (366)
T ss_dssp HHHHTTEEEECSSC--CCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-GGTTCCTTTSCHHHHHHHHHH
T ss_pred HHHhCcEEEEeCCC--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 378999986 47788999999986532 111 23577899999995 578999999999999999986
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=216.71 Aligned_cols=148 Identities=14% Similarity=0.100 Sum_probs=99.3
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCc-CccHHHHHHHhhHHHHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSM-SRTVREEFMSAFKEEMEIA 193 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~-~~tv~e~~~~~~~~~~~~~ 193 (555)
||||+|++||+++|+|+||||||||++++.+-.. .+.. +.-.|+++|++.... ..++.+++..
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~~-d~~~g~~~~~~~~~~~~~~~~~~~~~--------- 64 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VISS-DFCRGLMSDDENDQTVTGAAFDVLHY--------- 64 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEEH-HHHHHHHCSSTTCGGGHHHHHHHHHH---------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEcc-HHHHHHhcCcccchhhHHHHHHHHHH---------
Confidence 6899999999999999999999999998653221 1111 111255666543211 1111111100
Q ss_pred HHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHH
Q 008750 194 GKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
... .....|... ..+. ....|||||||++||||
T Consensus 65 --------------------------------------------~~~-~~~~~g~~~-~~~~-~~~~s~g~~qrv~iAra 97 (171)
T 4gp7_A 65 --------------------------------------------IVS-KRLQLGKLT-VVDA-TNVQESARKPLIEMAKD 97 (171)
T ss_dssp --------------------------------------------HHH-HHHHTTCCE-EEES-CCCSHHHHHHHHHHHHH
T ss_pred --------------------------------------------HHH-HHHhCCCeE-EEEC-CCCCHHHHHHHHHHHHH
Confidence 000 011123322 1222 34579999999999999
Q ss_pred hccCCCEEEEcCCCCCCCHH----------------HHHHHHHHHc---CCCceEEEEecCHHHHHhhccee
Q 008750 274 LLQDPDLLLLDEPTNHLDLD----------------TIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~----------------~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri 326 (555)
|+.+|++|+|||||++||+. ....+.+.++ +.|.|+|+||||++++.. ++++
T Consensus 98 l~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~-~~~~ 168 (171)
T 4gp7_A 98 YHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE-VVFE 168 (171)
T ss_dssp TTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH-EEEE
T ss_pred cCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh-hhhc
Confidence 99999999999999999998 5577777753 348999999999999976 4443
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-25 Score=231.57 Aligned_cols=129 Identities=28% Similarity=0.427 Sum_probs=113.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (359)
T 2yyz_A 3 SIRVVNLKKYFGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKYREVGMVFQ 82 (359)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECS
T ss_pred EEEEEEEEEEECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999888899999999999999999999999999999999999999999999998665 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhccc--Cc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAED--WR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~--~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+...... .. ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSgGq~QRvalA 145 (359)
T 2yyz_A 83 NY--ALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLID-NLLDRKPTQLSGGQQQRVALA 145 (359)
T ss_dssp SC--CCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 85 477889999999875321 11 23578899999995 578999999999999999986
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=232.42 Aligned_cols=129 Identities=29% Similarity=0.408 Sum_probs=112.9
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 82 (362)
T 2it1_A 3 EIKLENIVKKFGNFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKDRNVGLVFQ 82 (362)
T ss_dssp CEEEEEEEEESSSSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGTTEEEECT
T ss_pred EEEEEeEEEEECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHhHCcEEEEec
Confidence 48999999999887899999999999999999999999999999999999999999999998765 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 145 (362)
T 2it1_A 83 NW--ALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-KLLNRYPWQLSGGQQQRVAIA 145 (362)
T ss_dssp TC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-TCTTCCGGGSCHHHHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-hHhhCChhhCCHHHHHHHHHH
Confidence 85 47788999999986532 111 24578899999995 578999999999999999986
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-26 Score=215.92 Aligned_cols=135 Identities=13% Similarity=0.130 Sum_probs=102.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEc----CCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKA----KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~----g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
+++|+|+||||||||+++|+|++... .|...-. .....+||++|++. +.+++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~~------~~~~~----------------- 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTE------GKKKI----------------- 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETT------CCEEE-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecCc------HHHHH-----------------
Confidence 68999999999999999999998522 2322100 01235788888751 11111
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc-cccCCCCCCCChHHHHHHHHHHH-----
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA-DDGDRLVASFSSGWQMRMSLGKI----- 273 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~-~~~~~~~~~LSGGqrqRv~lAra----- 273 (555)
+..+++.. ...++++.+||||||||++||+|
T Consensus 59 -------------------------------------------~~~~~~~~~~~~~~~~~~lSgG~~qr~~la~aa~~~~ 95 (178)
T 1ye8_A 59 -------------------------------------------FSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREA 95 (178)
T ss_dssp -------------------------------------------EEETTCCCSSEETTEEECHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------HHhhcCCccccccccccCcCHHHHHHHHHHhhccccc
Confidence 01111111 24567788999999999999996
Q ss_pred hccCCCEEEEcC--CCCCCCHHHHHHHHHHHcCCCceEEEEe---cCHHHHHhhcce
Q 008750 274 LLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMVIIS---HDRAFLDQLCTK 325 (555)
Q Consensus 274 L~~~p~lLlLDE--PTs~LD~~~~~~l~~~l~~~~~tvIiiS---Hd~~~l~~~~dr 325 (555)
|+.+|++||||| ||++||+...+++.+++.+.+.|+|++| ||+.++..+|++
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTC
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcCCCeEEEEEccCCCchHHHHHHhc
Confidence 999999999999 9999999999999999988888888888 599999999998
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3e-25 Score=231.47 Aligned_cols=129 Identities=29% Similarity=0.475 Sum_probs=109.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|+++|+++.|++..+++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|
T Consensus 11 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~r~ig~v~Q 90 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQ 90 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC
T ss_pred eEEEEEEEEEECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChhhCcEEEEec
Confidence 48999999999888899999999999999999999999999999999999999999999998665 3789999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 91 ~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 153 (372)
T 1v43_A 91 SY--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVA 153 (372)
T ss_dssp --------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHH
T ss_pred Cc--ccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 85 47788999999987532 111 23578899999995 578999999999999999986
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.92 E-value=4.2e-25 Score=221.27 Aligned_cols=131 Identities=25% Similarity=0.358 Sum_probs=111.1
Q ss_pred eEEEEeeeEEcC--C---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeE
Q 008750 424 VVTIKNLEFGYE--D---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN 491 (555)
Q Consensus 424 ~l~~~~l~~~y~--~---~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~ 491 (555)
.|+++|+++.|+ + +.+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~~~~~~i~ 81 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYEIRRNIG 81 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHHHHGGGEE
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchHHhhhhEE
Confidence 478999999997 4 5699999999999999999999999999999999999999999999998654 378
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcc-----cCcHHHHHHHHhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAE-----DWRIDDIKGLLGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~~~~~~~~L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++...+ +..||.+++..... ......+..+|..+++.. +..++++..|||||||||+||
T Consensus 82 ~v~q~~~~~~-~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lA 150 (266)
T 2yz2_A 82 IAFQYPEDQF-FAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIA 150 (266)
T ss_dssp EECSSGGGGC-CCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHH
T ss_pred EEeccchhhc-CCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHH
Confidence 9999853233 56799999986421 122456888999999963 578999999999999999986
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-25 Score=229.97 Aligned_cols=127 Identities=27% Similarity=0.407 Sum_probs=111.7
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|+++ +++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~~r~ig~v~Q~ 80 (348)
T 3d31_A 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQN 80 (348)
T ss_dssp EEEEEEEEECSSC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECTT
T ss_pred EEEEEEEEEECCE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCchhhCcEEEEecC
Confidence 7899999999887 99999999999999999999999999999999999999999999998765 37899998
Q ss_pred CccCCCCCCCHHHHHHhhcc--c-CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--D-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~-~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..||.||+..... . .....+..+|..+++. +..+++|..|||||||||+||
T Consensus 81 ~--~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSgGq~QRvalA 139 (348)
T 3d31_A 81 Y--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALA 139 (348)
T ss_dssp C--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHH
T ss_pred c--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 5 57788999999976432 1 1125688899999995 578999999999999999986
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-25 Score=230.20 Aligned_cols=129 Identities=25% Similarity=0.398 Sum_probs=112.6
Q ss_pred eEEEEeeeEEcCCcc--ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 424 VVTIKNLEFGYEDRL--LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~--ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
.|+++|+++.|++.. +++++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|.++
T Consensus 3 ~l~i~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r 82 (353)
T 1oxx_K 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (353)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhC
Confidence 489999999998777 99999999999999999999999999999999999999999999998654
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.||+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ~ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~~~~~~LSGGq~QRvalA 152 (353)
T 1oxx_K 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALA 152 (353)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred CEEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hHhcCChhhCCHHHHHHHHHH
Confidence 268999985 47788999999987532 111 24578899999995 578999999999999999986
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.92 E-value=4.9e-25 Score=230.22 Aligned_cols=129 Identities=26% Similarity=0.410 Sum_probs=112.3
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------~ 489 (555)
.|+++|+++.|++..+++++||+|.+||+++|+||||||||||||+|+|+++|++|+|.++|.++ .
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~r~ 82 (372)
T 1g29_1 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (372)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred EEEEEeEEEEECCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhHCC
Confidence 48999999999888899999999999999999999999999999999999999999999998654 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .+++..||.+|+..... ... ...+..+|..+++. +..+++|.+|||||||||+||
T Consensus 83 ig~v~Q~~--~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-~~~~r~~~~LSGGq~QRvalA 151 (372)
T 1g29_1 83 IAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALG 151 (372)
T ss_dssp EEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred EEEEeCCC--ccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCc-hHhcCCcccCCHHHHHHHHHH
Confidence 68999985 47789999999986532 111 23578899999995 578999999999999999986
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-24 Score=215.59 Aligned_cols=130 Identities=25% Similarity=0.446 Sum_probs=105.2
Q ss_pred ceEEEEeeeEEc--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y--~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
.-++++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 348999999999 356799999999999999999999999999999999999999999999998654 27
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++. ++. .||.+|+.........+.+...+..+++.. +.+++++..|||||||||+||
T Consensus 86 ~~v~Q~~~--l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iA 157 (247)
T 2ff7_A 86 GVVLQDNV--LLN-RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 157 (247)
T ss_dssp EEECSSCC--CTT-SBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHH
T ss_pred EEEeCCCc--ccc-ccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHH
Confidence 89999863 444 599999976543334455666677766631 123455689999999999986
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.4e-24 Score=215.72 Aligned_cols=126 Identities=27% Similarity=0.495 Sum_probs=108.3
Q ss_pred eEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCC
Q 008750 424 VVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (555)
Q Consensus 424 ~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~ 502 (555)
.|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+. -.++|++|++ .+.
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~---~~i~~v~q~~--~~~ 78 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY---QSIGFVPQFF--SSP 78 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEEC---SCEEEECSCC--CCS
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEe---ccEEEEcCCC--ccC
Confidence 589999999998 7789999999999999999999999999999999999999999999854 2478999985 355
Q ss_pred CCCCHHHHHHhhcc---c-------CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 503 LDKTVLETVAEAAE---D-------WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 503 ~~~tv~e~l~~~~~---~-------~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+..||.|++..... . .....+..+|..+++. +..++++..|||||||||+||
T Consensus 79 ~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA 140 (253)
T 2nq2_C 79 FAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-HLAKREFTSLSGGQRQLILIA 140 (253)
T ss_dssp SCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-HHhcCChhhCCHHHHHHHHHH
Confidence 67899999986531 1 1124578899999995 578899999999999999986
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-25 Score=218.11 Aligned_cols=125 Identities=30% Similarity=0.436 Sum_probs=109.1
Q ss_pred EEEEeeeEEcCC----ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeE-E
Q 008750 425 VTIKNLEFGYED----RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPN-Y 492 (555)
Q Consensus 425 l~~~~l~~~y~~----~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~-y 492 (555)
|+++|+++.|++ +.+|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|.++ .++ |
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~~~~~~i~~~ 79 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKIRNYIRYSTN 79 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGCSCCTTEEEC
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcchHHhhheEEE
Confidence 789999999986 679999999999 9999999999999999999999999 9999999998654 478 9
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc--cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE--DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~--~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++. + ..||.+++..... ......+..+|..+++..+..++++..|||||||||+||
T Consensus 80 v~Q~~~--l--~~tv~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 80 LPEAYE--I--GVTVNDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp CGGGSC--T--TSBHHHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHH
T ss_pred eCCCCc--c--CCcHHHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHH
Confidence 999863 4 7899999976532 334567889999999963578999999999999999986
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.9e-25 Score=218.22 Aligned_cols=130 Identities=27% Similarity=0.347 Sum_probs=105.5
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCcee-----------ee
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNV-----------LP 490 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~--~~p~~G~v~~~~~~~-----------~~ 490 (555)
.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++ .+
T Consensus 3 ~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i 82 (250)
T 2d2e_A 3 QLEIRDLWASIDGETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGL 82 (250)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTB
T ss_pred eEEEEeEEEEECCEEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcE
Confidence 58999999999888899999999999999999999999999999999998 789999999998654 15
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc---c--Cc----HHHHHHHHhhCCCChhhhccccCC-CChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE---D--WR----IDDIKGLLGRCNFKADMLDRKVSL-LSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~---~--~~----~~~~~~~L~~~~~~~~~~~~~~~~-LSGGek~Rv~La 555 (555)
+|++|++ .+++..||.+++..... . .. ...+..+|..+++..+..++++.. |||||||||+||
T Consensus 83 ~~v~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 83 FLAFQYP--VEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp CCCCCCC--C-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHH
T ss_pred EEeccCC--ccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 6889986 35678899999865321 1 11 235778899999965678999999 999999999986
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=213.74 Aligned_cols=125 Identities=27% Similarity=0.407 Sum_probs=107.8
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++|+++.|++ +++++||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|.++ .++|++|+
T Consensus 2 l~~~~l~~~y~~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~i~~v~q~ 78 (240)
T 2onk_A 2 FLKVRAEKRLGN--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQD 78 (240)
T ss_dssp CEEEEEEEEETT--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCSS
T ss_pred EEEEEEEEEeCC--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCchhhCcEEEEcCC
Confidence 689999999975 49999999999 99999999999999999999999999999999998654 36899998
Q ss_pred CccCCCCCCCHHHHHHhhcccC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAEDW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+.+..||.|++....... ..+.+..+|..+++. +..++++..|||||||||+||
T Consensus 79 ~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGqkqRv~lA 138 (240)
T 2onk_A 79 Y--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALA 138 (240)
T ss_dssp C--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHH
T ss_pred C--ccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHcCCH-HHhcCChhhCCHHHHHHHHHH
Confidence 5 4667889999997653211 134578899999995 568999999999999999986
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.7e-24 Score=216.97 Aligned_cols=132 Identities=27% Similarity=0.324 Sum_probs=109.1
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--CCCCceEEEECCcee-----------
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--EKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~--~~p~~G~v~~~~~~~----------- 488 (555)
.+.|+++|+++.|+++.+|+++||+|++||+++|+||||||||||+|+|+|+ .+|++|+|.++|.++
T Consensus 18 ~~~l~~~~l~~~y~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~ 97 (267)
T 2zu0_C 18 SHMLSIKDLHVSVEDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGE 97 (267)
T ss_dssp --CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHH
T ss_pred CceEEEEeEEEEECCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhC
Confidence 4579999999999888899999999999999999999999999999999999 468999999998654
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhc-------c--cCc----HHHHHHHHhhCCCChhhhccccC-CCChhHHhchhc
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAA-------E--DWR----IDDIKGLLGRCNFKADMLDRKVS-LLSGGEKVNQTL 554 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~-------~--~~~----~~~~~~~L~~~~~~~~~~~~~~~-~LSGGek~Rv~L 554 (555)
.++|++|++ .+.+..||.+++.... . ... ...+..+|..+++..+..++++. .|||||||||+|
T Consensus 98 ~i~~v~Q~~--~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~i 175 (267)
T 2zu0_C 98 GIFMAFQYP--VEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDI 175 (267)
T ss_dssp TEEEECSSC--CCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHH
T ss_pred CEEEEccCc--cccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHH
Confidence 168999986 4567889999986421 0 011 23577899999996556788887 599999999998
Q ss_pred C
Q 008750 555 V 555 (555)
Q Consensus 555 a 555 (555)
|
T Consensus 176 A 176 (267)
T 2zu0_C 176 L 176 (267)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-29 Score=252.16 Aligned_cols=164 Identities=12% Similarity=0.131 Sum_probs=123.5
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcC
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMS 175 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~ 175 (555)
..|+++||+|.|+ .++|++|||+|++|++++|+||||||||||+++|+|++ +|+|. +|++|++.++ .
T Consensus 100 ~~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~~lf-~ 166 (305)
T 2v9p_A 100 TFFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKSHFW-L 166 (305)
T ss_dssp HHHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTSGGG-G
T ss_pred CeEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCccccc-c
Confidence 3589999999998 77999999999999999999999999999999999999 89884 5678887764 4
Q ss_pred ccHHH-HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccC
Q 008750 176 RTVRE-EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGD 254 (555)
Q Consensus 176 ~tv~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~ 254 (555)
.|+++ |+..... . ...+.+.++.+ ++. ..+
T Consensus 167 ~ti~~~ni~~~~~-------------------~----------------------------~~~~~~~i~~~-L~~-gld 197 (305)
T 2v9p_A 167 ASLADTRAALVDD-------------------A----------------------------THACWRYFDTY-LRN-ALD 197 (305)
T ss_dssp GGGTTCSCEEEEE-------------------E----------------------------CHHHHHHHHHT-TTG-GGG
T ss_pred ccHHHHhhccCcc-------------------c----------------------------cHHHHHHHHHH-hHc-cCC
Confidence 57776 5432100 0 00111122221 211 112
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeE
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~ 334 (555)
...|||||||| ||||+.+|+||| |++||+.+...+.. +||++..+ ..||+| +|++|++
T Consensus 198 --g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~-----------ltH~~~~~-~~aD~i-vl~~G~i 255 (305)
T 2v9p_A 198 --GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY-----------LHSRVQTF-RFEQPC-TDESGEQ 255 (305)
T ss_dssp --TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG-----------GTTTEEEE-ECCCCC-CCC---C
T ss_pred --ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH-----------HhCCHHHH-HhCCEE-EEeCCEE
Confidence 56899999999 999999999999 99999998877752 29998877 579999 9999986
Q ss_pred eeccCChHHH
Q 008750 335 RTYEGNYSQY 344 (555)
Q Consensus 335 ~~~~G~y~~~ 344 (555)
++.|+..++
T Consensus 256 -v~~g~~~el 264 (305)
T 2v9p_A 256 -PFNITDADW 264 (305)
T ss_dssp -CCCCCHHHH
T ss_pred -EEeCCHHHH
Confidence 567887765
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=216.44 Aligned_cols=129 Identities=25% Similarity=0.411 Sum_probs=105.3
Q ss_pred ceEEEEeeeEEcCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008750 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (555)
Q Consensus 423 ~~l~~~~l~~~y~~---~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~ 489 (555)
..|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999976 6799999999999999999999999999999999999999999999998654 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcccCcH-H---------HHHHHHhhC--CCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRI-D---------DIKGLLGRC--NFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~-~---------~~~~~L~~~--~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .++. .||.||+......... . .+..++..+ ++. +..++++..|||||||||+||
T Consensus 95 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~-~~~~~~~~~LSgGq~QRv~lA 168 (271)
T 2ixe_A 95 VAAVGQEP--LLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYD-TEVGETGNQLSGGQRQAVALA 168 (271)
T ss_dssp EEEECSSC--CCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGG-SBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEEecCC--cccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchh-hhhcCCcCCCCHHHHHHHHHH
Confidence 78999986 3444 5999999865322111 1 123456666 553 456889999999999999986
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.2e-24 Score=219.53 Aligned_cols=130 Identities=21% Similarity=0.377 Sum_probs=106.6
Q ss_pred ceEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeE
Q 008750 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPN 491 (555)
Q Consensus 423 ~~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~ 491 (555)
..|+++||+|.|+ +..+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++
T Consensus 52 ~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~ 131 (306)
T 3nh6_A 52 GRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIG 131 (306)
T ss_dssp CCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEE
T ss_pred CeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceE
Confidence 3589999999995 46799999999999999999999999999999999999999999999998765 378
Q ss_pred EEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 492 YFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 492 y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
|++|++ .++ ..||.+|+..........++...+..+++.. ..+.+++..|||||||||+||
T Consensus 132 ~v~Q~~--~lf-~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 132 VVPQDT--VLF-NDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp EECSSC--CCC-SEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred EEecCC--ccC-cccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHH
Confidence 999986 344 4599999987765445555655555555421 123456689999999999986
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-24 Score=214.35 Aligned_cols=128 Identities=19% Similarity=0.383 Sum_probs=104.3
Q ss_pred EEEEeeeEEc-CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 425 VTIKNLEFGY-EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 425 l~~~~l~~~y-~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
|+++|+++.| +++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|+
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 7899999999 567799999999999999999999999999999999999999999999998654 26899
Q ss_pred ecCCccCCCCCCCHHHHHHhh-cccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEA-AEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~-~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .++. .||.+|+... ........+...+..+++... .+++++..|||||||||+||
T Consensus 82 ~q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lA 151 (243)
T 1mv5_A 82 SQDS--AIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (243)
T ss_dssp CCSS--CCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred cCCC--cccc-ccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHH
Confidence 9986 3444 5999999764 233344556777777776421 12356789999999999986
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.90 E-value=7.1e-24 Score=210.04 Aligned_cols=124 Identities=24% Similarity=0.385 Sum_probs=107.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNYF 493 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y~ 493 (555)
.|+++|+++. .+|+++||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|.++ .++|+
T Consensus 4 ~l~~~~l~~~----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v 78 (249)
T 2qi9_C 4 VMQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYL 78 (249)
T ss_dssp EEEEEEEEET----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEE
T ss_pred EEEEEceEEE----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEE
Confidence 5899999986 5899999999999999999999999999999999999999 9999998654 27899
Q ss_pred ecCCccCCCCCCCHHHHHHhhcc-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 494 EQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 494 ~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++ .+++..||.|++..... ......+..+|..+++. +..++++..|||||||||+||
T Consensus 79 ~q~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgGq~qrv~lA 138 (249)
T 2qi9_C 79 SQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLA 138 (249)
T ss_dssp CSCC--CCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCG-GGTTSBGGGCCHHHHHHHHHH
T ss_pred CCCC--ccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 9986 35677899999986431 11355688899999995 578899999999999999986
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-27 Score=251.50 Aligned_cols=171 Identities=11% Similarity=0.110 Sum_probs=131.0
Q ss_pred ceeeeeeeEEEECCC--------------------EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-eEEEEec
Q 008750 110 VTVLKDVTWEVKKGE--------------------KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-KIAFLSQ 168 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge--------------------~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-~ig~v~Q 168 (555)
..+|++|||+|++|+ ++||+|+||||||||+|+|+|+++|++|+|.++|.+. +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 468999999999999 9999999999999999999999999999999887542 2378999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++ .++..|+.|+..... . ..++.++++.+++
T Consensus 116 ~~-~~~~ltv~D~~g~~~--------------------------------------------~----~~~~~~~L~~~~L 146 (413)
T 1tq4_A 116 HP-NIPNVVFWDLPGIGS--------------------------------------------T----NFPPDTYLEKMKF 146 (413)
T ss_dssp CS-SCTTEEEEECCCGGG--------------------------------------------S----SCCHHHHHHHTTG
T ss_pred cc-ccCCeeehHhhcccc--------------------------------------------h----HHHHHHHHHHcCC
Confidence 85 345677766532110 0 1124556677776
Q ss_pred CccccCCCCCCCChH--HHHHHHHHHHhcc----------CCCEEEEcCCCCCCCHHHHHHHHHHHcC--------C---
Q 008750 249 TADDGDRLVASFSSG--WQMRMSLGKILLQ----------DPDLLLLDEPTNHLDLDTIEWLEGYLGK--------Q--- 305 (555)
Q Consensus 249 ~~~~~~~~~~~LSGG--qrqRv~lAraL~~----------~p~lLlLDEPTs~LD~~~~~~l~~~l~~--------~--- 305 (555)
... +..+. |||| |+||++||++|+. +|++|+|||||++||+..+..+.+.+++ .
T Consensus 147 ~~~--~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~ 223 (413)
T 1tq4_A 147 YEY--DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIA 223 (413)
T ss_dssp GGC--SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCS
T ss_pred Ccc--CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 432 33343 9999 9999999999999 9999999999999999877766654422 1
Q ss_pred -CceEEEEecCHHH--HHhhcceeE-EecCC
Q 008750 306 -DVPMVIISHDRAF--LDQLCTKIV-ETEMG 332 (555)
Q Consensus 306 -~~tvIiiSHd~~~--l~~~~dri~-~l~~G 332 (555)
..+|+++||++.. ++.+||+|. .|..|
T Consensus 224 ~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 224 EPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp SCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 3568889999987 899999986 34444
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-23 Score=205.01 Aligned_cols=125 Identities=25% Similarity=0.405 Sum_probs=98.6
Q ss_pred eEEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCC
Q 008750 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (555)
Q Consensus 424 ~l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l 501 (555)
.|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .+
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~i~~v~q~~--~~ 80 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQFS--WI 80 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---CEEEECSSC--CC
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---EEEEEecCC--cc
Confidence 589999999995 46799999999999999999999999999999999999999999999987 488999986 34
Q ss_pred CCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
.+. ||.||+..... .........+..+++... .+++++..|||||||||+||
T Consensus 81 ~~~-tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lA 142 (229)
T 2pze_A 81 MPG-TIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 142 (229)
T ss_dssp CSB-CHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHH
T ss_pred cCC-CHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHH
Confidence 444 99999986532 122223334444443210 13345789999999999986
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=6.7e-24 Score=208.91 Aligned_cols=125 Identities=23% Similarity=0.381 Sum_probs=99.0
Q ss_pred eEEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCC
Q 008750 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEAL 501 (555)
Q Consensus 424 ~l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l 501 (555)
.|+++|+++.|+ ++.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++. +
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---~i~~v~Q~~~--~ 77 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---SVAYVPQQAW--I 77 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS---CEEEECSSCC--C
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC---EEEEEcCCCc--C
Confidence 489999999997 46799999999999999999999999999999999999999999999987 4899999862 4
Q ss_pred CCCCCHHHHHHhhcccCcHHHHHHHHhhCC------CCh----hhhccccCCCChhHHhchhcC
Q 008750 502 DLDKTVLETVAEAAEDWRIDDIKGLLGRCN------FKA----DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 502 ~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~------~~~----~~~~~~~~~LSGGek~Rv~La 555 (555)
+..||.+|+...... ........+..++ ..+ ..+++++..|||||||||+||
T Consensus 78 -~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 78 -QNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred -CCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 467999999865321 1111222222222 211 125688999999999999986
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=209.63 Aligned_cols=129 Identities=22% Similarity=0.327 Sum_probs=104.3
Q ss_pred ceEEEEeeeEEcCC---ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------e
Q 008750 423 SVVTIKNLEFGYED---RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------L 489 (555)
Q Consensus 423 ~~l~~~~l~~~y~~---~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~ 489 (555)
..|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++ .
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 35899999999975 3699999999999999999999999999999999999987 89999998654 2
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .++. .||.+|+..........++...+..+++... .+++++..|||||||||+||
T Consensus 95 i~~v~Q~~--~l~~-~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lA 167 (260)
T 2ghi_A 95 IGIVPQDT--ILFN-ETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIA 167 (260)
T ss_dssp EEEECSSC--CCCS-EEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHH
T ss_pred EEEEcCCC--cccc-cCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHH
Confidence 78999986 3443 5999999865333344556677777765321 12467899999999999986
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-25 Score=224.31 Aligned_cols=173 Identities=18% Similarity=0.247 Sum_probs=134.3
Q ss_pred eCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEeccc
Q 008750 107 YKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEF 170 (555)
Q Consensus 107 y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~ 170 (555)
|+....++.+||++++|++++|||+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++
T Consensus 84 l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~ 163 (302)
T 3b9q_A 84 LAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG 163 (302)
T ss_dssp HCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC-
T ss_pred hCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecC
Confidence 4333334678999999999999999999999999999999999999999987542 489999998
Q ss_pred c-cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 171 E-VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 171 ~-~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
. .++..++.+++..+.. . ..+ ..+++.+|+.
T Consensus 164 ~~~~~~~~v~e~l~~~~~----------------~--------------------------~~d------~~lldt~gl~ 195 (302)
T 3b9q_A 164 DKAKAATVLSKAVKRGKE----------------E--------------------------GYD------VVLCDTSGRL 195 (302)
T ss_dssp -CCCHHHHHHHHHHHHHH----------------T--------------------------TCS------EEEECCCCCS
T ss_pred CccCHHHHHHHHHHHHHH----------------c--------------------------CCc------chHHhcCCCC
Confidence 7 7777788887642100 0 000 1246677775
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec---------CHHH
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAF 318 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH---------d~~~ 318 (555)
+ ..++++.+|| +||++|||||+.+|+ +|+|| ||++||+... +.++-+..+.|+|++|| .++.
T Consensus 196 ~-~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~--~~~~~~~~g~t~iiiThlD~~~~~g~~l~~ 268 (302)
T 3b9q_A 196 H-TNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQ--AREFNEVVGITGLILTKLDGSARGGCVVSV 268 (302)
T ss_dssp S-CCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHH--HHHHHHHTCCCEEEEECCSSCSCTHHHHHH
T ss_pred c-chhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHH--HHHHHHhcCCCEEEEeCCCCCCccChheeh
Confidence 3 4567788899 999999999999999 99999 9999998754 33333456899999999 7778
Q ss_pred HHhhcceeEEecCCeE
Q 008750 319 LDQLCTKIVETEMGVS 334 (555)
Q Consensus 319 l~~~~dri~~l~~G~~ 334 (555)
+..++..|.++..|..
T Consensus 269 ~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 269 VEELGIPVKFIGVGEA 284 (302)
T ss_dssp HHHHCCCEEEEECSSS
T ss_pred HHHHCCCEEEEeCCCC
Confidence 8888899999998863
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=6e-23 Score=215.45 Aligned_cols=127 Identities=20% Similarity=0.292 Sum_probs=108.8
Q ss_pred ceEEEEeeeEEc--CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y--~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..|+++|+++.| ++..+|+++||+|++||+++|+||||||||||||+|+|+++ ++|+|.++|.++ .+
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~i 96 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAF 96 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTE
T ss_pred CeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCE
Confidence 458999999999 55679999999999999999999999999999999999998 899999998754 36
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCC-----------CChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSL-----------LSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~-----------LSGGek~Rv~La 555 (555)
+|++|++ .+++ .||.+|+.... .....++..+|..+++. +..+++|.. |||||||||+||
T Consensus 97 g~v~Q~~--~lf~-~tv~enl~~~~-~~~~~~v~~~l~~~~L~-~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalA 167 (390)
T 3gd7_A 97 GVIPQKV--FIFS-GTFRKNLDPNA-AHSDQEIWKVADEVGLR-SVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLA 167 (390)
T ss_dssp EEESCCC--CCCS-EEHHHHHCTTC-CSCHHHHHHHHHHTTCH-HHHTTSTTGGGCEECTTTTTSCHHHHHHHHHH
T ss_pred EEEcCCc--ccCc-cCHHHHhhhcc-ccCHHHHHHHHHHhCCH-HHHhhcccccccccccccccCCHHHHHHHHHH
Confidence 8999986 3544 59999996332 33456788899999995 578888888 999999999986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.88 E-value=6.9e-26 Score=218.30 Aligned_cols=173 Identities=10% Similarity=-0.019 Sum_probs=106.7
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC------CCceEEEEecccccCcCccHHHHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK------SNMKIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g------~~~~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.++++| .+|++|++++|+||||||||||+|+|+|+++...+.+.+.+ ....++|++|++..++.+|+.+++.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~ 86 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELL 86 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTTCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEE
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCce
Confidence 357888 79999999999999999999999999999863332221111 1124789999876655556555432
Q ss_pred HhhHHHHHHHHHHHHHHHHHhh-ccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH------hhhcCCCccccCCC
Q 008750 184 SAFKEEMEIAGKLERVQKALES-AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL------MPELGFTADDGDRL 256 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------l~~lgl~~~~~~~~ 256 (555)
..... ..+ .. . ........+++.+. ++.+|+. ...+++
T Consensus 87 ~~~~~--------------~~n~~~-----~---------------g~~~~~~~~~~~~~~~~~~~l~~~gl~-~~~~~~ 131 (207)
T 1znw_A 87 EWAEI--------------HGGLHR-----S---------------GTLAQPVRAAAATGVPVLIEVDLAGAR-AIKKTM 131 (207)
T ss_dssp EEEEE--------------GGGTEE-----E---------------EEEHHHHHHHHHHTCCEEEECCHHHHH-HHHHHC
T ss_pred eehhh--------------cCchhh-----c---------------CCcHHHHHHHHHcCCeEEEEeCHHHHH-HHHHhc
Confidence 11000 000 00 0 00001122233333 4444442 334566
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCC----CHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeEE
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHL----DLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~L----D~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
+..|| +|+.+|++++|||||++| |+..+..+.++++ +.+.|+|+||||++++..+||+|++
T Consensus 132 ~~~lS-----------~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~ 200 (207)
T 1znw_A 132 PEAVT-----------VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLV 200 (207)
T ss_dssp TTSEE-----------EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC
T ss_pred CCcEE-----------EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHH
Confidence 67787 999999999999999998 6777777776653 3589999999999999999999998
Q ss_pred ec
Q 008750 329 TE 330 (555)
Q Consensus 329 l~ 330 (555)
|.
T Consensus 201 l~ 202 (207)
T 1znw_A 201 GT 202 (207)
T ss_dssp --
T ss_pred hc
Confidence 84
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-24 Score=228.76 Aligned_cols=174 Identities=13% Similarity=0.158 Sum_probs=135.8
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------------
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN------------- 160 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~------------- 160 (555)
++.++++|+++.|+ +..+|+++ |+|.+|++++|+|+||||||||+++|+|+.+|+.|.|.+.|.+
T Consensus 129 ~~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 129 FNPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CCTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CCceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 35689999999997 67899999 9999999999999999999999999999999999999998862
Q ss_pred -----ceEEEEecc-cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCccc
Q 008750 161 -----MKIAFLSQE-FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDT 234 (555)
Q Consensus 161 -----~~ig~v~Q~-~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
..++|++|+ ...+++.++.+|+...... + .. ...
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~--------------~------------------------~~-~~~- 247 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIAED--------------F------------------------RD-RGQ- 247 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHH--------------H------------------------HT-TTC-
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHHHH--------------H------------------------Hh-CCC-
Confidence 258999995 4444566777765431100 0 00 000
Q ss_pred HHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCC-------Cc
Q 008750 235 LDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQ-------DV 307 (555)
Q Consensus 235 ~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~-------~~ 307 (555)
.++. ..+. +..||+|| |||+|| +.+|++ |++||+.....+.+++.+. |.
T Consensus 248 ------~v~~-------~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~Gs 303 (438)
T 2dpy_A 248 ------HVLL-------IMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGS 303 (438)
T ss_dssp ------EEEE-------EEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCE
T ss_pred ------CHHH-------HHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCc
Confidence 0000 1111 45799999 999999 888888 9999999999999988542 42
Q ss_pred -----eEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 308 -----PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 308 -----tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
||+++|||++ ..+||++++|.+|+++
T Consensus 304 iT~~~tVlv~tHdl~--~~iad~v~~l~dG~Iv 334 (438)
T 2dpy_A 304 ITAFYTVLTEGDDQQ--DPIADSARAILDGHIV 334 (438)
T ss_dssp EEEEEEEECSSSCSC--CHHHHHHHHHSSEEEE
T ss_pred ccceeEEEEeCCCcc--chhhceEEEEeCcEEE
Confidence 8999999999 5789999999999864
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-21 Score=202.76 Aligned_cols=78 Identities=23% Similarity=0.396 Sum_probs=68.3
Q ss_pred ccCCCCCCCChHHHH------HHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhh
Q 008750 252 DGDRLVASFSSGWQM------RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 252 ~~~~~~~~LSGGqrq------Rv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~ 322 (555)
..++++.+||||||| |+++|++|+.+|++|||||||++||+..+..+.++|.+ .+.|||+||||.++ ..+
T Consensus 241 ~~~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~-~~~ 319 (339)
T 3qkt_A 241 GKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEEL-KDA 319 (339)
T ss_dssp TEEECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGG-GGG
T ss_pred cCcCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHH-HHh
Confidence 346788999999999 67888999999999999999999999999998887753 46799999999765 578
Q ss_pred cceeEEec
Q 008750 323 CTKIVETE 330 (555)
Q Consensus 323 ~dri~~l~ 330 (555)
||+|++|+
T Consensus 320 ~d~~~~l~ 327 (339)
T 3qkt_A 320 ADHVIRIS 327 (339)
T ss_dssp CSEEEEEE
T ss_pred CCEEEEEE
Confidence 99999986
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.6e-22 Score=221.37 Aligned_cols=130 Identities=23% Similarity=0.384 Sum_probs=108.2
Q ss_pred ceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..++++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHF 419 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCe
Confidence 35899999999974 6799999999999999999999999999999999999999999999998665 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhc-ccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++. ++. .||.||+.... +....+++...+..+++... .+.++...|||||||||+||
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iA 492 (582)
T 3b5x_A 420 ALVSQNVH--LFN-DTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIA 492 (582)
T ss_pred EEEcCCCc--ccc-ccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHH
Confidence 89999863 444 49999998764 44556677888888877421 12345689999999999986
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.87 E-value=4.3e-22 Score=220.71 Aligned_cols=130 Identities=25% Similarity=0.381 Sum_probs=108.6
Q ss_pred ceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..++++|+++.|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i 419 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 419 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhC
Confidence 35899999999973 6799999999999999999999999999999999999999999999998765 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhc-ccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAA-EDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~-~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++. ++. .||.||+.... +....+++...+..+++.. ..+.+++..|||||||||+||
T Consensus 420 ~~v~Q~~~--l~~-~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iA 492 (582)
T 3b60_A 420 ALVSQNVH--LFN-DTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 492 (582)
T ss_dssp EEECSSCC--CCS-SBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred eEEccCCc--CCC-CCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 89999863 444 49999998764 4455677888888887742 112345689999999999986
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.87 E-value=9.3e-24 Score=219.25 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=132.6
Q ss_pred eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEecccc-cCcCc
Q 008750 114 KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFE-VSMSR 176 (555)
Q Consensus 114 ~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~~-~~~~~ 176 (555)
..+||++++|++++|||+||||||||+++|+|+++|++|+|.+.+.+. .|+|++|++. .++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 468999999999999999999999999999999999999999987542 4899999987 77777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++.+++..+.. . ..+ ..+++.+|+.+ ..++.
T Consensus 228 tv~e~l~~~~~----------------~------------------------~~d--------~~lldt~Gl~~-~~~~~ 258 (359)
T 2og2_A 228 VLSKAVKRGKE----------------E------------------------GYD--------VVLCDTSGRLH-TNYSL 258 (359)
T ss_dssp HHHHHHHHHHH----------------T------------------------TCS--------EEEEECCCCSS-CCHHH
T ss_pred hHHHHHHHHHh----------------C------------------------CCH--------HHHHHhcCCCh-hhhhH
Confidence 88887642110 0 000 12466777753 44677
Q ss_pred CCCCChHHHHHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec---------CHHHHHhhcce
Q 008750 257 VASFSSGWQMRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH---------DRAFLDQLCTK 325 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH---------d~~~l~~~~dr 325 (555)
+.+|| +||++|||+|+.+|+ +|+|| ||++||+.... ..+-+..+.|+|++|| .++.+...+..
T Consensus 259 ~~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~p 332 (359)
T 2og2_A 259 MEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIP 332 (359)
T ss_dssp HHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH--HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCC
T ss_pred HHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH--HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCC
Confidence 88899 999999999999999 99999 99999987543 3333456899999999 57788888899
Q ss_pred eEEecCCe
Q 008750 326 IVETEMGV 333 (555)
Q Consensus 326 i~~l~~G~ 333 (555)
|.++..|.
T Consensus 333 I~~ig~Ge 340 (359)
T 2og2_A 333 VKFIGVGE 340 (359)
T ss_dssp EEEEECSS
T ss_pred EEEEeCCC
Confidence 99998885
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.2e-21 Score=212.07 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=69.5
Q ss_pred CCCCCC-ChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEEe
Q 008750 255 RLVASF-SSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 255 ~~~~~L-SGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
+++..| ||||+|||+||++|+.+| ++|||||||++||+.+...+.++|++ .+.|||+||||++++. .||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 567788 999999999999999999 99999999999999999998887753 2899999999999886 69999999
Q ss_pred cCC
Q 008750 330 EMG 332 (555)
Q Consensus 330 ~~G 332 (555)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 655
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.3e-25 Score=227.90 Aligned_cols=180 Identities=8% Similarity=0.071 Sum_probs=129.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEE-----------------------EECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWE-----------------------VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~-----------------------i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
..|+++||++.|+ +++++++|. +++|+++||+|+||||||||+++|+|+++|+.|
T Consensus 42 ~~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G 119 (312)
T 3aez_A 42 EQIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDH 119 (312)
T ss_dssp CCCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred CeEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence 3589999999994 677777764 899999999999999999999999999999866
Q ss_pred EEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc
Q 008750 153 NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL 232 (555)
Q Consensus 153 ~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 (555)
. ..++||+|+..+++. |+.+|+..... . ....
T Consensus 120 ~-------~~v~~v~qd~~~~~~-t~~e~~~~~~~------------------~----------------------g~~~ 151 (312)
T 3aez_A 120 H-------PRVDLVTTDGFLYPN-AELQRRNLMHR------------------K----------------------GFPE 151 (312)
T ss_dssp C-------CCEEEEEGGGGBCCH-HHHHHTTCTTC------------------T----------------------TSGG
T ss_pred C-------CeEEEEecCccCCcc-cHHHHHHHHHh------------------c----------------------CCCh
Confidence 4 358999999887665 88887532100 0 0000
Q ss_pred ccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-CCceEEE
Q 008750 233 DTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVI 311 (555)
Q Consensus 233 ~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-~~~tvIi 311 (555)
......+.++++.++ . ...+.++..|||||+||+++|++++.+|+|||||||+..+|+.. ..+.+ .+ .+|+
T Consensus 152 ~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~D-~~I~ 223 (312)
T 3aez_A 152 SYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLFD-FSLY 223 (312)
T ss_dssp GBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGCS-EEEE
T ss_pred HHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhcC-cEEE
Confidence 111234455566665 2 23356677999999999999999999999999999999998521 11222 34 4577
Q ss_pred EecCHHHH-HhhcceeEEecCCe
Q 008750 312 ISHDRAFL-DQLCTKIVETEMGV 333 (555)
Q Consensus 312 iSHd~~~l-~~~~dri~~l~~G~ 333 (555)
|+|+.+.. ...++|.+.+.++.
T Consensus 224 V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 224 VDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEECHHHHHHHHHHHHHHHTTTG
T ss_pred EECCHHHHHHHHHHHHHHHHhcc
Confidence 88888664 34566666665543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.86 E-value=7.8e-22 Score=218.43 Aligned_cols=130 Identities=27% Similarity=0.403 Sum_probs=107.0
Q ss_pred ceEEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
.-++++|++|+|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 338 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i 417 (578)
T 4a82_A 338 GRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQI 417 (578)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTE
T ss_pred CeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 35899999999974 4799999999999999999999999999999999999999999999998765 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCCh----------hhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA----------DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~----------~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .++. .||.||+....+....+++...+...++.. .....+...|||||||||+||
T Consensus 418 ~~v~Q~~--~l~~-~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lA 489 (578)
T 4a82_A 418 GLVQQDN--ILFS-DTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 489 (578)
T ss_dssp EEECSSC--CCCS-SBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred EEEeCCC--ccCc-ccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHH
Confidence 8999986 3544 499999987765555666666666665521 123345579999999999986
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.8e-22 Score=199.98 Aligned_cols=123 Identities=24% Similarity=0.418 Sum_probs=84.9
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCC
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALD 502 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~ 502 (555)
..|+++|+++.+ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++|++|++ .++
T Consensus 39 ~~l~~~~l~~~~--~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l~ 111 (290)
T 2bbs_A 39 DSLSFSNFSLLG--TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG---RISFCSQNS--WIM 111 (290)
T ss_dssp -----------C--CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS---CEEEECSSC--CCC
T ss_pred ceEEEEEEEEcC--ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC---EEEEEeCCC--ccC
Confidence 358999999864 5689999999999999999999999999999999999999999999987 478999986 344
Q ss_pred CCCCHHHHHHhhcccCcHHHHHHHHhhCCCChh----------hhccccCCCChhHHhchhcC
Q 008750 503 LDKTVLETVAEAAEDWRIDDIKGLLGRCNFKAD----------MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 503 ~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~----------~~~~~~~~LSGGek~Rv~La 555 (555)
+ .||.+++. .. ......+...+..+++... .+.+++..|||||||||+||
T Consensus 112 ~-~tv~enl~-~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 112 P-GTIKENII-GV-SYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp S-SBHHHHHH-TT-CCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred c-ccHHHHhh-Cc-ccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 4 49999998 32 1222223344444444211 12345689999999999986
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.86 E-value=4.9e-25 Score=214.33 Aligned_cols=170 Identities=14% Similarity=0.090 Sum_probs=103.8
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-----------ceEEEEecccccCcCccHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-----------MKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-----------~~ig~v~Q~~~~~~~~tv~ 179 (555)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.+ ..++|++|++.++..++..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99988 432 2467888876543221100
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (555)
..+ ++... ..+ ...+ .....+.++++...+. ..+ .+
T Consensus 87 ~~~--------------------l~~~~----~~~-------------~~~g--~~~~~i~~~l~~~~~~--il~---~~ 122 (218)
T 1z6g_A 87 EDF--------------------LEYDN----YAN-------------NFYG--TLKSEYDKAKEQNKIC--LFE---MN 122 (218)
T ss_dssp TCE--------------------EEEEE----ETT-------------EEEE--EEHHHHHHHHHTTCEE--EEE---EC
T ss_pred cch--------------------hhhhh----ccc-------------ccCC--CcHHHHHHHHhCCCcE--EEE---ec
Confidence 000 00000 000 0000 0012334444443321 112 47
Q ss_pred CChHHHHHHHH-----HHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----------CCceEEEEecCHHHHHhhcc
Q 008750 260 FSSGWQMRMSL-----GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----------QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 260 LSGGqrqRv~l-----AraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----------~~~tvIiiSHd~~~l~~~~d 324 (555)
|||||+||++| |++|+.+|++++|||||+++|..+...+.+.+.+ ...+.|+++||++.+...++
T Consensus 123 lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~ 202 (218)
T 1z6g_A 123 INGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLK 202 (218)
T ss_dssp HHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHH
Confidence 89999999999 8999999999999999999998776666655431 34567777788777777777
Q ss_pred eeEE
Q 008750 325 KIVE 328 (555)
Q Consensus 325 ri~~ 328 (555)
+|+.
T Consensus 203 ~ii~ 206 (218)
T 1z6g_A 203 NYLL 206 (218)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.8e-22 Score=234.76 Aligned_cols=164 Identities=15% Similarity=0.132 Sum_probs=118.1
Q ss_pred CccEEEEe-----EEEEe-CCceeeeeeeEEEEC-------CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc
Q 008750 95 SSGVKLEN-----ISKSY-KGVTVLKDVTWEVKK-------GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM 161 (555)
Q Consensus 95 ~~~i~l~n-----ls~~y-~~~~vL~~vsl~i~~-------Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~ 161 (555)
.++|+++| |++.| ++..+++||+|++.+ |++++|+||||||||||||+| |++.+- .
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~----------a 816 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM----------A 816 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH----------H
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH----------h
Confidence 45799999 99999 667899999999987 999999999999999999999 998651 1
Q ss_pred eEE-EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHH
Q 008750 162 KIA-FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVS 240 (555)
Q Consensus 162 ~ig-~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (555)
++| ||||+.. ..+|.+++.
T Consensus 817 qiG~~Vpq~~~---~l~v~d~I~--------------------------------------------------------- 836 (1022)
T 2o8b_B 817 QMGCYVPAEVC---RLTPIDRVF--------------------------------------------------------- 836 (1022)
T ss_dssp TTTCCEESSEE---EECCCSBEE---------------------------------------------------------
T ss_pred heeEEeccCcC---CCCHHHHHH---------------------------------------------------------
Confidence 345 8999753 334433321
Q ss_pred HHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHH-HHHHH---HHHcC-CCceEEEEecC
Q 008750 241 KLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT-IEWLE---GYLGK-QDVPMVIISHD 315 (555)
Q Consensus 241 ~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~-~~~l~---~~l~~-~~~tvIiiSHd 315 (555)
..+|+. +...+..+++|+++++ +++|++++.+|+++||||||+|+|+.. ...++ +.|.+ .|.++|++||+
T Consensus 837 ---~rig~~-d~~~~~~stf~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~ 911 (1022)
T 2o8b_B 837 ---TRLGAS-DRIMSGESTFFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHY 911 (1022)
T ss_dssp ---EECC----------CHHHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCC
T ss_pred ---HHcCCH-HHHhhchhhhHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCC
Confidence 122322 1222344678888775 999999999999999999999999865 33333 34444 48999999999
Q ss_pred HHHHHhhcceeEEecCCeEe
Q 008750 316 RAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~ 335 (555)
.+++..+||++++++ |++.
T Consensus 912 ~el~~~~~d~~~v~~-g~~~ 930 (1022)
T 2o8b_B 912 HSLVEDYSQNVAVRL-GHMA 930 (1022)
T ss_dssp HHHHHHTSSCSSEEE-EEEE
T ss_pred HHHHHHhCCcceeec-CeEE
Confidence 999999999998874 6554
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.4e-21 Score=199.44 Aligned_cols=84 Identities=18% Similarity=0.067 Sum_probs=74.1
Q ss_pred CCCCC-CCChHHHHHHHHHHHhc---------cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhc
Q 008750 254 DRLVA-SFSSGWQMRMSLGKILL---------QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 254 ~~~~~-~LSGGqrqRv~lAraL~---------~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~ 323 (555)
++++. .||||||||++||++|+ .+|+||||||||++||+..+..|.+.+.+.+.|+|++||+ +. .|
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~qt~i~~th~-~~---~~ 334 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVPQAIVTGTEL-AP---GA 334 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSSEEEEEESSC-CT---TC
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcCcEEEEEEec-cc---cC
Confidence 56777 79999999999999999 8999999999999999999999999997766899999995 43 89
Q ss_pred ceeEEecCCeEeeccCChH
Q 008750 324 TKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~ 342 (555)
|++++|++|++. ..|+..
T Consensus 335 ~~i~~l~~G~i~-~~g~~~ 352 (359)
T 2o5v_A 335 ALTLRAQAGRFT-PVADEE 352 (359)
T ss_dssp SEEEEEETTEEE-ECCCTT
T ss_pred CEEEEEECCEEE-ecCCHH
Confidence 999999999974 456544
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=7.1e-22 Score=219.52 Aligned_cols=128 Identities=22% Similarity=0.353 Sum_probs=106.3
Q ss_pred eEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEE
Q 008750 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y 492 (555)
-|+++|++|.|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~ 433 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGI 433 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEE
T ss_pred eEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEE
Confidence 4899999999964 5799999999999999999999999999999999999999999999998766 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhcc-----------ccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDR-----------KVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~-----------~~~~LSGGek~Rv~La 555 (555)
++|++ .++ +.||.||+....+....+++...+...++. +..++ +...|||||||||+||
T Consensus 434 v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iA 503 (598)
T 3qf4_B 434 VLQDT--ILF-STTVKENLKYGNPGATDEEIKEAAKLTHSD-HFIKHLPEGYETVLTDNGEDLSQGQRQLLAIT 503 (598)
T ss_dssp ECTTC--CCC-SSBHHHHHHSSSTTCCTTHHHHHTTTTTCH-HHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHH
T ss_pred EeCCC--ccc-cccHHHHHhcCCCCCCHHHHHHHHHHhCCH-HHHHhccccccchhcCCCCCCCHHHHHHHHHH
Confidence 99986 343 459999998765544555677777777663 23333 3479999999999986
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-21 Score=217.22 Aligned_cols=130 Identities=28% Similarity=0.380 Sum_probs=106.4
Q ss_pred ceEEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 423 SVVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 423 ~~l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
..|+++|++|+|+ ++++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i 419 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHI 419 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHE
T ss_pred CcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhhe
Confidence 3589999999995 35799999999999999999999999999999999999999999999998766 37
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCC----------hhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~----------~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .++ +.||.||+....+....+++...+...++. .....+++..||||||||++||
T Consensus 420 ~~v~Q~~--~lf-~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lA 491 (587)
T 3qf4_A 420 SAVPQET--VLF-SGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491 (587)
T ss_dssp EEECSSC--CCC-SEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHH
T ss_pred EEECCCC--cCc-CccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHH
Confidence 8999986 344 349999998765555555555555544432 1234677899999999999986
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.2e-23 Score=215.11 Aligned_cols=141 Identities=12% Similarity=0.137 Sum_probs=106.6
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHH
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVR 179 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~ 179 (555)
+++++| | .++++++||.|++|++++|+|+||||||||+++|+|+++|++|.|.++|.+. ..+... +
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--------~~~~~~---~ 216 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--------IVFKHH---K 216 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--------CCCSSC---S
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--------cccccc---h
Confidence 444444 4 3489999999999999999999999999999999999999999999987531 000000 0
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCC
Q 008750 180 EEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259 (555)
Q Consensus 180 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~ 259 (555)
..+++ +..
T Consensus 217 ----------------------------------------------------------------~~i~~--------~~g 224 (330)
T 2pt7_A 217 ----------------------------------------------------------------NYTQL--------FFG 224 (330)
T ss_dssp ----------------------------------------------------------------SEEEE--------ECB
T ss_pred ----------------------------------------------------------------hEEEE--------EeC
Confidence 00000 001
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
|||+||++||+||..+|++|||||||+. +..+.| +.+...+.|+|+++|+.+ +...||||++|.+|.
T Consensus 225 --gg~~~r~~la~aL~~~p~ilildE~~~~---e~~~~l-~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 225 --GNITSADCLKSCLRMRPDRIILGELRSS---EAYDFY-NVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp --TTBCHHHHHHHHTTSCCSEEEECCCCST---HHHHHH-HHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred --CChhHHHHHHHHhhhCCCEEEEcCCChH---HHHHHH-HHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 8999999999999999999999999982 344433 333333458999999999 556899999998875
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-22 Score=209.60 Aligned_cols=175 Identities=15% Similarity=0.197 Sum_probs=125.2
Q ss_pred CccEEEEeEEEEeC-CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc------------
Q 008750 95 SSGVKLENISKSYK-GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------ 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~-~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------ 161 (555)
++.++++++++.|+ +..+++++ |+|.+|+++||+|+||||||||+++|+|+..|+.|.|.+.|.+.
T Consensus 43 ~~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 43 PDPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp SCSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 35689999999997 77899999 99999999999999999999999999999999999988776431
Q ss_pred -----eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 162 -----KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 162 -----~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
.+.+++|... +..+.+...+ ..+
T Consensus 122 ~~~~~~v~~~~~~~~-----~~~~r~~~~~--------------~~~--------------------------------- 149 (347)
T 2obl_A 122 STLSKCVLVVTTSDR-----PALERMKAAF--------------TAT--------------------------------- 149 (347)
T ss_dssp HHHTTEEEEEECTTS-----CHHHHHHHHH--------------HHH---------------------------------
T ss_pred hhhhceEEEEECCCC-----CHHHHHHHHH--------------HHH---------------------------------
Confidence 1344443211 1111110000 000
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-----CCc----
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-----QDV---- 307 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-----~~~---- 307 (555)
.+.+++...|-.....-..+..||+|| |||++| +.+|++ |+|||+.....+.+++.+ .|.
T Consensus 150 -~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~ 218 (347)
T 2obl_A 150 -TIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAI 218 (347)
T ss_dssp -HHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEE
T ss_pred -HHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeE
Confidence 000000111110001113467899999 899999 688887 999999999999998854 255
Q ss_pred -eEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 308 -PMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 308 -tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
||+++|||++ ..+||++++|.+|+++
T Consensus 219 ~tVl~~thdl~--~~i~d~v~~i~dG~Iv 245 (347)
T 2obl_A 219 YTVLLESDNVN--DPIGDEVRSILDGHIV 245 (347)
T ss_dssp EEEECCSSCCC--CHHHHHHHHHCSEEEE
T ss_pred EEEEEeCCCCC--ChhhhheEEeeCcEEE
Confidence 8999999999 6789999999999874
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=7.8e-23 Score=205.10 Aligned_cols=141 Identities=15% Similarity=0.173 Sum_probs=88.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLE 197 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~ 197 (555)
.++|||+||||||||+++|+|+..|++|+|.++|.+ ..++|++|++.+++.+||.|++..+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~---------- 73 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQ---------- 73 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CC----------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhh----------
Confidence 589999999999999999999999999999988753 369999999988888899887643210
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccC
Q 008750 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277 (555)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~ 277 (555)
... ....+.+..++. ....++.+.+|||||+||++||||++.
T Consensus 74 ---------~~~-----------------------~~~~~~i~~~~~-----~~~~~~~~~~LS~G~~qrv~iaRal~~- 115 (270)
T 3sop_A 74 ---------INN-----------------------ENCWEPIEKYIN-----EQYEKFLKEEVNIARKKRIPDTRVHCC- 115 (270)
T ss_dssp ---------SBC-----------------------TTCSHHHHHHHH-----HHHHHHHHHHSCTTCCSSCCCCSCCEE-
T ss_pred ---------ccc-----------------------HHHHHHHHHHHH-----HHHHhhhHHhcCcccchhhhhheeeee-
Confidence 000 000000111111 012233456899999999999999986
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHH
Q 008750 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (555)
Q Consensus 278 p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~ 317 (555)
+++|||||++||+...+.+.. |.+. .++|+|.|..+
T Consensus 116 --lllldep~~gL~~lD~~~l~~-L~~~-~~vI~Vi~K~D 151 (270)
T 3sop_A 116 --LYFISPTGHSLRPLDLEFMKH-LSKV-VNIIPVIAKAD 151 (270)
T ss_dssp --EEEECCCSSSCCHHHHHHHHH-HHTT-SEEEEEETTGG
T ss_pred --eEEEecCCCcCCHHHHHHHHH-HHhc-CcEEEEEeccc
Confidence 999999999999988665554 4444 88999888743
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-22 Score=215.49 Aligned_cols=168 Identities=11% Similarity=0.076 Sum_probs=121.1
Q ss_pred EEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCc
Q 008750 98 VKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 98 i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
++++++++.|++ ..+| +..|.+|++++|+|+||||||||+++|+|...|. |+ .-+.|++|++..
T Consensus 258 ~~~~~l~~g~~~ld~vL---~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-------~vi~~~~ee~~~---- 322 (525)
T 1tf7_A 258 SSNVRVSSGVVRLDEMC---GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-------RAILFAYEESRA---- 322 (525)
T ss_dssp CCCCEECCSCHHHHHHT---TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-------CEEEEESSSCHH----
T ss_pred cccceeecChHHHHHHh---CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-------CEEEEEEeCCHH----
Confidence 455666654433 1233 4489999999999999999999999999998875 43 113556665421
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
.+..+.. .++. ... + +...|+. ...+++
T Consensus 323 ~l~~~~~---------------------------------------------~~g~-~~~----~-~~~~g~~-~~~~~~ 350 (525)
T 1tf7_A 323 QLLRNAY---------------------------------------------SWGM-DFE----E-MERQNLL-KIVCAY 350 (525)
T ss_dssp HHHHHHH---------------------------------------------TTSC-CHH----H-HHHTTSE-EECCCC
T ss_pred HHHHHHH---------------------------------------------HcCC-CHH----H-HHhCCCE-EEEEec
Confidence 1111100 0000 111 1 1123332 345677
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHH-----HHHHHHHHH---cCCCceEEEEecCH----------HH
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLD-----TIEWLEGYL---GKQDVPMVIISHDR----------AF 318 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~-----~~~~l~~~l---~~~~~tvIiiSHd~----------~~ 318 (555)
+.+|||||+||+++|+++..+|++||+| ||++||.. .++.+.+++ ++.|.|+|+|||+. .+
T Consensus 351 p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~ 429 (525)
T 1tf7_A 351 PESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSH 429 (525)
T ss_dssp GGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSC
T ss_pred cccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcc
Confidence 8899999999999999999999999999 99999998 777766654 56799999999999 78
Q ss_pred HHhhcceeEEecCCe
Q 008750 319 LDQLCTKIVETEMGV 333 (555)
Q Consensus 319 l~~~~dri~~l~~G~ 333 (555)
+..+||+|++|+.|.
T Consensus 430 l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 430 ISTITDTIILLQYVE 444 (525)
T ss_dssp CTTTCSEEEEEEEEE
T ss_pred cceeeeEEEEEEEEE
Confidence 888999999999876
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=3.2e-21 Score=195.72 Aligned_cols=180 Identities=21% Similarity=0.150 Sum_probs=110.3
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce-EEEEcCCCceEEEEecccccCcCccHHHHHHHhhHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKE 188 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (555)
.++|+++++.|++|++++|+|+||||||||++.|+|.+.|++| .|.+ +..+. +..+...
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~---------~~~e~------~~~~~~~----- 81 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGL---------AMLEE------SVEETAE----- 81 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEE---------EESSS------CHHHHHH-----
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEE---------EeCcC------CHHHHHH-----
Confidence 3589999999999999999999999999999999999998877 5543 22211 1111000
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHH-HHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW-QMR 267 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq-rqR 267 (555)
++....... +......+ .. ..+...+....+..++...++. ....+..+|.+| +||
T Consensus 82 ---------r~~~~~~~~--~~~~~~~l-~~--------~~~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~ 138 (296)
T 1cr0_A 82 ---------DLIGLHNRV--RLRQSDSL-KR--------EIIENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAK 138 (296)
T ss_dssp ---------HHHHHHTTC--CGGGCHHH-HH--------HHHHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHH
T ss_pred ---------HHHHHHcCC--Chhhcccc-cc--------CCCCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHH
Confidence 000000000 00000000 00 0001112233444555443331 223345789999 666
Q ss_pred HHHHHHhccCCCEEEEcCCCC---C---CCH-HHHHHHHHHH----cCCCceEEEEecCH--H-----------------
Q 008750 268 MSLGKILLQDPDLLLLDEPTN---H---LDL-DTIEWLEGYL----GKQDVPMVIISHDR--A----------------- 317 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs---~---LD~-~~~~~l~~~l----~~~~~tvIiiSHd~--~----------------- 317 (555)
+. |+++..+|++||+||||+ + +|. .....+.+.| ++.+.|||++||+. +
T Consensus 139 ~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~ 217 (296)
T 1cr0_A 139 LA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLR 217 (296)
T ss_dssp HH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC
T ss_pred HH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhc
Confidence 66 999999999999999999 4 454 4445555554 34699999999994 5
Q ss_pred ---HHHhhcceeEEecCCe
Q 008750 318 ---FLDQLCTKIVETEMGV 333 (555)
Q Consensus 318 ---~l~~~~dri~~l~~G~ 333 (555)
.+.++||+|++|+.|+
T Consensus 218 ~s~~i~~~aD~vi~L~~~~ 236 (296)
T 1cr0_A 218 GSGALRQLSDTIIALERNQ 236 (296)
T ss_dssp ---CHHHHCSEEEEEEEC-
T ss_pred ccHHhHhhCcEEEEEecCc
Confidence 7888999999998875
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.2e-21 Score=214.72 Aligned_cols=185 Identities=17% Similarity=0.133 Sum_probs=129.2
Q ss_pred HhhhhHhHHHHHHHhhhHHHHhccCcchhhhhhcccccCCCCCCCCCccEEEEeEEEEe---CCceeeeeeeEEEECCCE
Q 008750 49 VSAATVEKKSIAKAQSDVESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSY---KGVTVLKDVTWEVKKGEK 125 (555)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~nls~~y---~~~~vL~~vsl~i~~Ge~ 125 (555)
+......++....+.+.++-+++....... ..-..|.. .+.|.+++...-+ ++..+++|+||+ |++
T Consensus 510 i~~~~~~l~~~~~~la~LD~l~s~a~~a~~--~~~~~P~~------~~~i~i~~~rHP~le~~~~~vl~disl~---g~i 578 (765)
T 1ewq_A 510 AKRQAEALREAARILAELDVYAALAEVAVR--YGYVRPRF------GDRLQIRAGRHPVVERRTEFVPNDLEMA---HEL 578 (765)
T ss_dssp HHTTHHHHHHHHHHHHHHHHHHHHHHHHHH--HTCBCCEE------SSSEEEEEECCTTGGGTSCCCCEEEEES---SCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--CCceeecc------CCcEEEEEeECceEccCCceEeeeccCC---CcE
Confidence 333444445566666667766665432211 11112221 3458888884333 346799999999 999
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHh
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~ 204 (555)
++|+||||||||||||+|+|+.. ++.|.+... ....+++++| ++...++.+++
T Consensus 579 ~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vpa-~~~~i~~v~~---i~~~~~~~d~l---------------------- 632 (765)
T 1ewq_A 579 VLITGPNMAGKSTFLRQTALIALLAQVGSFVPA-EEAHLPLFDG---IYTRIGASDDL---------------------- 632 (765)
T ss_dssp EEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSS-SEEEECCCSE---EEEECCC--------------------------
T ss_pred EEEECCCCCChHHHHHHHHhhhhhcccCceeeh-hccceeeHHH---hhccCCHHHHH----------------------
Confidence 99999999999999999999874 677875422 2235677766 22333444332
Q ss_pred hccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHh--ccCCCEEE
Q 008750 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLL 282 (555)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL--~~~p~lLl 282 (555)
...+|+|+++++.+|++| +.+|+++|
T Consensus 633 ----------------------------------------------------~~g~S~~~~e~~~la~il~~a~~p~LlL 660 (765)
T 1ewq_A 633 ----------------------------------------------------AGGKSTFMVEMEEVALILKEATENSLVL 660 (765)
T ss_dssp ------------------------------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEE
T ss_pred ----------------------------------------------------HhcccHHHHHHHHHHHHHHhccCCCEEE
Confidence 124799999999999999 99999999
Q ss_pred EcCC---CCCCCHHHH-HHHHHHHcCCCceEEEEecCHHHHHhhc
Q 008750 283 LDEP---TNHLDLDTI-EWLEGYLGKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 283 LDEP---Ts~LD~~~~-~~l~~~l~~~~~tvIiiSHd~~~l~~~~ 323 (555)
|||| |++||..+. ..+.+.|.+.|.|+|++|||.++.. +|
T Consensus 661 LDEpgrGTs~lD~~~~~~~i~~~L~~~g~~vl~~TH~~~l~~-~~ 704 (765)
T 1ewq_A 661 LDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA-LG 704 (765)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT-CC
T ss_pred EECCCCCCCCcCHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hh
Confidence 9999 999999886 4577777767899999999998874 44
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=8.3e-21 Score=187.56 Aligned_cols=169 Identities=11% Similarity=0.105 Sum_probs=101.9
Q ss_pred CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhH
Q 008750 108 KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (555)
Q Consensus 108 ~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~ 187 (555)
+++++|+||||++++|+++||+|+||||||||+++|+|++ |.+.++.....++|++|+. ++...|+.+++.....
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~-~~~~l~~~~~~~~~~~ 84 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR-FYKVLTAEQKAKALKG 84 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG-GBCCCCHHHHHHHHTT
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc-CccccCHhHhhhhhcc
Confidence 4567999999999999999999999999999999999976 4443332234689999995 5566788876532100
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHH
Q 008750 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (555)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (555)
. .. ..+. .... ...+.+.|+.+. ...++.+..||+||+||
T Consensus 85 ~---------------~~-~~~~--------------------~~~~-~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r 124 (245)
T 2jeo_A 85 Q---------------YN-FDHP--------------------DAFD-NDLMHRTLKNIV---EGKTVEVPTYDFVTHSR 124 (245)
T ss_dssp C---------------CC-TTSG--------------------GGBC-HHHHHHHHHHHH---TTCCEEECCEETTTTEE
T ss_pred C---------------CC-CCCc--------------------cccc-HHHHHHHHHHHH---CCCCeecccccccccCc
Confidence 0 00 0000 0000 112223333321 12356678999999999
Q ss_pred HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecC-HHHHHhhcceeEEecCC
Q 008750 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD-RAFLDQLCTKIVETEMG 332 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd-~~~l~~~~dri~~l~~G 332 (555)
+++ ++++.+|+++|||||...+|.. +.+ -.+.+|+++||+ ......+++++ ++|
T Consensus 125 ~~~-~~~~~~~~~lilDg~~~~~~~~----l~~---~~~~~i~v~th~~~~~~r~~~r~~---~~G 179 (245)
T 2jeo_A 125 LPE-TTVVYPADVVLFEGILVFYSQE----IRD---MFHLRLFVDTDSDVRLSRRVLRDV---RRG 179 (245)
T ss_dssp CSS-CEEECCCSEEEEECTTTTTSHH----HHT---TCSEEEEEECCHHHHHHHHHHHHT---C--
T ss_pred cCc-eEEecCCCEEEEeCccccccHH----HHH---hcCeEEEEECCHHHHHHHHHHHHH---HcC
Confidence 988 6889999999999999888764 222 248899999997 44445555555 555
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-21 Score=194.91 Aligned_cols=141 Identities=19% Similarity=0.239 Sum_probs=108.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCCCceEEEEecccccCcCc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMKIAFLSQEFEVSMSR 176 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~~~~ig~v~Q~~~~~~~~ 176 (555)
++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.+ ++|++|+...+.
T Consensus 6 ~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~--i~~~~~~~~~~v-- 75 (261)
T 2eyu_A 6 PEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP--IEYVFKHKKSIV-- 75 (261)
T ss_dssp CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS--CCSCCCCSSSEE--
T ss_pred CChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc--ceeecCCcceee--
Confidence 456677642 5899999 9999999999999999999999999999998 9999988754 345554321100
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
. . ..+|+..
T Consensus 76 ------------------------------------------------------~-q----------~~~gl~~------ 84 (261)
T 2eyu_A 76 ------------------------------------------------------N-Q----------REVGEDT------ 84 (261)
T ss_dssp ------------------------------------------------------E-E----------EEBTTTB------
T ss_pred ------------------------------------------------------e-H----------HHhCCCH------
Confidence 0 0 1234321
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecC
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEM 331 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~ 331 (555)
..| |++||++|..+|++||||||| |+.+...+.+.. ..|.+|++++|+.+ +..+|||+++|..
T Consensus 85 -~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~l~~~-~~g~~vl~t~H~~~-~~~~~dri~~l~~ 147 (261)
T 2eyu_A 85 -KSF------ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDIFP 147 (261)
T ss_dssp -SCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSS-HHHHHHHHHHTSC
T ss_pred -HHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHHHH-ccCCEEEEEeCcch-HHHHHHHHhhhcC
Confidence 123 899999999999999999999 998877666554 35899999999988 4568999887753
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-21 Score=182.84 Aligned_cols=150 Identities=17% Similarity=0.161 Sum_probs=104.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC--------CceEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS--------NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~--------~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
|++++|+|+||||||||+++|+|+++ ++| |.++|. ...+||++|+..- .. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~~g--~~---~~------------- 60 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTLSG--TR---GP------------- 60 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEETTS--CE---EE-------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEeccc--ce---eh-------------
Confidence 78999999999999999999999998 899 877653 2357888887511 00 00
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCc------cccCCCCCCCChHHHHHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTA------DDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~------~~~~~~~~~LSGGqrqRv 268 (555)
+..+++.. ....++...+|+|||+++
T Consensus 61 ------------------------------------------------l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 61 ------------------------------------------------LSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ------------------------------------------------EEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ------------------------------------------------hhcccccCCccccccccceEEEcchHHHHHHH
Confidence 11111111 122344557999999988
Q ss_pred -HHHH---HhccCCCEEEEcC--CCCCCCHHHHHHHHHHHcCCCceEE---EEecCH--HHHHhhcceeEEecCCeEeec
Q 008750 269 -SLGK---ILLQDPDLLLLDE--PTNHLDLDTIEWLEGYLGKQDVPMV---IISHDR--AFLDQLCTKIVETEMGVSRTY 337 (555)
Q Consensus 269 -~lAr---aL~~~p~lLlLDE--PTs~LD~~~~~~l~~~l~~~~~tvI---iiSHd~--~~l~~~~dri~~l~~G~~~~~ 337 (555)
+|++ |++.+|++||||| |++.+|....+.|.+++.....+|| .||||. .+++++ ..+++|+++..
T Consensus 93 ~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~~ilgti~vsh~~~~~~vd~i----~~~~~~~i~~~ 168 (189)
T 2i3b_A 93 PVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEI----RNRKDVKVFNV 168 (189)
T ss_dssp TTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSCCTTHHHH----HTTCCSEEEEC
T ss_pred HHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCcEEEEEeecCCCCchHHHHHH----eecCCcEEEEe
Confidence 4455 6899999999999 9999999999999999987644442 445997 555544 44456665443
Q ss_pred c-CChHHH
Q 008750 338 E-GNYSQY 344 (555)
Q Consensus 338 ~-G~y~~~ 344 (555)
. .|.+..
T Consensus 169 ~~~nr~~~ 176 (189)
T 2i3b_A 169 TKENRNHL 176 (189)
T ss_dssp CSSSGGGH
T ss_pred ChHhHHHH
Confidence 2 455443
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=5e-19 Score=189.09 Aligned_cols=76 Identities=18% Similarity=0.348 Sum_probs=67.0
Q ss_pred CCCCCCCChHHHHHHHHHHHhc----cCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhccee
Q 008750 254 DRLVASFSSGWQMRMSLGKILL----QDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~----~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~dri 326 (555)
.+++..||||||||++||++|+ .+|++|||||||++||+..+..|.+++++ .+.++|+|||+..++ ..||++
T Consensus 328 ~~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~-~~~d~~ 406 (430)
T 1w1w_A 328 FKDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMF-EKSDAL 406 (430)
T ss_dssp CCCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHH-TTCSEE
T ss_pred ccccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHH-HhCCEE
Confidence 3455679999999999999999 58999999999999999999999998864 367999999998776 579999
Q ss_pred EEec
Q 008750 327 VETE 330 (555)
Q Consensus 327 ~~l~ 330 (555)
+.+.
T Consensus 407 ~~~~ 410 (430)
T 1w1w_A 407 VGVY 410 (430)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9885
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-19 Score=207.57 Aligned_cols=154 Identities=17% Similarity=0.144 Sum_probs=108.6
Q ss_pred ccEEEEeEEEEe-----CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHH--------HcCCCCCceEEEEcCCCce
Q 008750 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRII--------AGQEEPDSGNVIKAKSNMK 162 (555)
Q Consensus 96 ~~i~l~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i--------~G~~~p~~G~I~~~g~~~~ 162 (555)
..|.+++...-+ ++..+++||+|++.+|++++|+||||||||||||+| .|.+-|..+..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 457777765444 134689999999999999999999999999999999 66665544321
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
++++. .+
T Consensus 702 ~~~~d-------------------------------------------------------------------------~i 708 (934)
T 3thx_A 702 VSIVD-------------------------------------------------------------------------CI 708 (934)
T ss_dssp EECCS-------------------------------------------------------------------------EE
T ss_pred chHHH-------------------------------------------------------------------------HH
Confidence 11110 01
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHh--ccCCCEEEEcCCCCCCCHHHHHHH----HHHHcC-CCceEEEEecC
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKIL--LQDPDLLLLDEPTNHLDLDTIEWL----EGYLGK-QDVPMVIISHD 315 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL--~~~p~lLlLDEPTs~LD~~~~~~l----~~~l~~-~~~tvIiiSHd 315 (555)
+..+|+. +.....+|+|+.+++.+|++| +.+|+++||||||+|||+.....+ .+.+.+ .|.|+|++||+
T Consensus 709 ~~~ig~~----d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~ 784 (934)
T 3thx_A 709 LARVGAG----DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHF 784 (934)
T ss_dssp EEECC-------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESC
T ss_pred HHhcCch----hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCc
Confidence 2222322 122346788888888888888 999999999999999999765444 344543 58999999999
Q ss_pred HHHHHhhcceeEEecCCeEe
Q 008750 316 RAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~ 335 (555)
.++. .+||++..+.+|++.
T Consensus 785 ~el~-~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 785 HELT-ALANQIPTVNNLHVT 803 (934)
T ss_dssp GGGG-GGGGTCTTEEEEEEE
T ss_pred HHHH-HHhcccceeEeeEEE
Confidence 7766 689999888887653
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.8e-19 Score=162.80 Aligned_cols=81 Identities=27% Similarity=0.407 Sum_probs=71.4
Q ss_pred cCCCCCCCChHHHHHHHHH------HHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC---CCceEEEEecCHHHHHhhc
Q 008750 253 GDRLVASFSSGWQMRMSLG------KILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK---QDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lA------raL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~---~~~tvIiiSHd~~~l~~~~ 323 (555)
.++++.+||||||||++|| |||+.+|++|||||||++||+.++.++.+.+.+ .|.|||+||||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 4688999999999999876 899999999999999999999999999988754 3789999999995 56799
Q ss_pred ceeEEe--cCCeE
Q 008750 324 TKIVET--EMGVS 334 (555)
Q Consensus 324 dri~~l--~~G~~ 334 (555)
|+|++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45643
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-20 Score=180.22 Aligned_cols=74 Identities=19% Similarity=0.239 Sum_probs=47.3
Q ss_pred CChHHH-HHHHHHHHhcc-------CCCEEEEcCCCCCCCHH----------------HHHHHHHHHcCCCceEEEEec-
Q 008750 260 FSSGWQ-MRMSLGKILLQ-------DPDLLLLDEPTNHLDLD----------------TIEWLEGYLGKQDVPMVIISH- 314 (555)
Q Consensus 260 LSGGqr-qRv~lAraL~~-------~p~lLlLDEPTs~LD~~----------------~~~~l~~~l~~~~~tvIiiSH- 314 (555)
++++++ +.+..+..++. +|++|+|||||+.||+. ....|.++.++.|.|||+|||
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~ 179 (231)
T 4a74_A 100 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 179 (231)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeec
Confidence 344443 33455555544 99999999999999983 122233334456999999999
Q ss_pred ---CHHHHHhhcceeEEecCCe
Q 008750 315 ---DRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 315 ---d~~~l~~~~dri~~l~~G~ 333 (555)
+-..+..+||++++|++|.
T Consensus 180 ~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 180 QANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp C---------CCSEEEEEEECT
T ss_pred ccCcchhhHhhceEEEEEEecC
Confidence 5556999999999998753
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-19 Score=206.42 Aligned_cols=152 Identities=13% Similarity=0.133 Sum_probs=99.9
Q ss_pred cEEEEeEEEEe-------CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCCceEEEEec
Q 008750 97 GVKLENISKSY-------KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y-------~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~~~ig~v~Q 168 (555)
.|.+++...-+ ++..+++||||++.+|++++|+||||||||||||+|+++.-. ..|.. +......++++.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~-vpa~~~~i~~~d- 717 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY-VPAEEATIGIVD- 717 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC-BSSSEEEEECCS-
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc-ccchhhhhhHHH-
Confidence 46777665433 245799999999999999999999999999999999864211 01100 000000111111
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
.++..+|+
T Consensus 718 ------------------------------------------------------------------------~i~~~ig~ 725 (918)
T 3thx_B 718 ------------------------------------------------------------------------GIFTRMGA 725 (918)
T ss_dssp ------------------------------------------------------------------------EEEEEC--
T ss_pred ------------------------------------------------------------------------HHHHhCCh
Confidence 01222222
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHH----HHH-cCCCceEEEEecCHHHHHhhc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLE----GYL-GKQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~----~~l-~~~~~tvIiiSHd~~~l~~~~ 323 (555)
. +...+.+++||+|++|++.|+++ +.+|++|||||||+|||+.....+. +.+ ++.|.|+|++|||++++ .+|
T Consensus 726 ~-d~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~ 802 (918)
T 3thx_B 726 A-DNIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELE 802 (918)
T ss_dssp ---------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHH
T ss_pred H-HHHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHH
Confidence 1 12234457899999999999999 8999999999999999997655543 333 34689999999998776 456
Q ss_pred ce
Q 008750 324 TK 325 (555)
Q Consensus 324 dr 325 (555)
|+
T Consensus 803 ~~ 804 (918)
T 3thx_B 803 KN 804 (918)
T ss_dssp HH
T ss_pred hh
Confidence 54
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.2e-21 Score=195.62 Aligned_cols=158 Identities=16% Similarity=0.155 Sum_probs=83.7
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC-CCCCceEEEEcCCC-------ceEEEEeccccc
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ-EEPDSGNVIKAKSN-------MKIAFLSQEFEV 172 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-~~p~~G~I~~~g~~-------~~ig~v~Q~~~~ 172 (555)
.||+++|+++.++++++|+| +|||+||+|||||+++|+|. ..|++| |.++|.+ ..+++++|....
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~~~ 74 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEERGV 74 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC---C
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCCCc
Confidence 58899999999999999999 99999999999999999998 889998 6554322 236888888766
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
...+|++|+...... .. . .+. ...+...+. ..
T Consensus 75 ~~~ltv~Dt~g~~~~--~~-------------~----~e~-------------------~~~l~~~l~----------~~ 106 (301)
T 2qnr_A 75 KLRLTVVDTPGYGDA--IN-------------C----RDC-------------------FKTIISYID----------EQ 106 (301)
T ss_dssp CEEEEEEEEC-------------------------------------------------CTTHHHHHH----------HH
T ss_pred ccCcchhhhhhhhhh--cC-------------c----HHH-------------------HHHHHHHHH----------HH
Confidence 666777665422100 00 0 000 000000000 11
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCC-CCHHHHHHHHHHHcCCCceEEEEecCHH
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH-LDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~-LD~~~~~~l~~~l~~~~~tvIiiSHd~~ 317 (555)
.++++.++|||||||+.+|||++ +|++||||++ ||+...+.+..+-.+.+.++|+.+||+.
T Consensus 107 ~~~~~~~~sgg~rqrv~~ara~~----ll~ldePt~~~Ld~~~~~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 107 FERYLHDESGLNRRHIIDNRVHC----CFYFISPFGHGLKPLDVAFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp HHHHHHHHTSSCCTTCCCCCCCE----EEEEECSSSSSCCHHHHHHHHHHTTTSCEEEEECCGGGS
T ss_pred HHHHHHHhCHHhhhhhhhhhhhh----eeeeecCcccCCCHHHHHHHHHHHhcCCEEEEEEeCCCC
Confidence 23445689999999999999986 9999999986 9998865544433335788999999974
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=8.3e-18 Score=176.21 Aligned_cols=75 Identities=27% Similarity=0.426 Sum_probs=66.7
Q ss_pred CCCCCCChHHHHHH------HHHHHhccC-CCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEecCHHHHHhhcce
Q 008750 255 RLVASFSSGWQMRM------SLGKILLQD-PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 255 ~~~~~LSGGqrqRv------~lAraL~~~-p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiSHd~~~l~~~~dr 325 (555)
+++..|||||+||+ ++|++|+.+ |++|||||||++||+.....+.+.|.+. +.+||+|||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56789999999988 567999999 9999999999999999999999988653 469999999987 5689999
Q ss_pred eEEec
Q 008750 326 IVETE 330 (555)
Q Consensus 326 i~~l~ 330 (555)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.1e-20 Score=181.92 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=104.0
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC--cCccHHHHHHHhhHHHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS--MSRTVREEFMSAFKEEMEIAGKLE 197 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~--~~~tv~e~~~~~~~~~~~~~~~~~ 197 (555)
.++|+++||+|+||||||||+++|+|++.| .++|++|++.+. ...++.++....+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~---------- 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYD---------- 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT----------
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCC----------
Confidence 578999999999999999999999998865 478999998664 34577665422110
Q ss_pred HHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHH----HHHHHHHHH
Q 008750 198 RVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW----QMRMSLGKI 273 (555)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGq----rqRv~lAra 273 (555)
. +......++.++++.+++.. ..++++..+|+|+ +||+++|++
T Consensus 61 ----------~----------------------~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~s~g~~~~~~~~~~~~~~ 107 (211)
T 3asz_A 61 ----------H----------------------PDAFDLALYLEHAQALLRGL-PVEMPVYDFRAYTRSPRRTPVRPAPV 107 (211)
T ss_dssp ----------S----------------------GGGBCHHHHHHHHHHHHTTC-CEEECCEETTTTEECSSCEEECCCSE
T ss_pred ----------C----------------------hhhhhHHHHHHHHHHHHcCC-CcCCCcccCcccCCCCCeEEeCCCcE
Confidence 0 00011223444455555542 3456778999996 478899999
Q ss_pred hccCCCEEEEcCCCCC-------CCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 274 LLQDPDLLLLDEPTNH-------LDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~-------LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
++.+|.++++||||++ ||+.....+.+.+. +.|.|+++++|+..
T Consensus 108 li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~~ 162 (211)
T 3asz_A 108 VILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYL 162 (211)
T ss_dssp EEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred EEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 9999999999999999 89887777766654 35899999999853
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-18 Score=163.41 Aligned_cols=169 Identities=14% Similarity=0.120 Sum_probs=105.3
Q ss_pred CceeeeeeeE-EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhH
Q 008750 109 GVTVLKDVTW-EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK 187 (555)
Q Consensus 109 ~~~vL~~vsl-~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~ 187 (555)
+.+.|+++.+ .|++|++++|+|+||||||||++.|++...+..|.|.+. ..+. +..+ +...
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~---------~~~~------~~~~-~~~~-- 69 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYV---------TTEE------SRDS-IIRQ-- 69 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEE---------ESSS------CHHH-HHHH--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE---------Eccc------CHHH-HHHH--
Confidence 3457888887 899999999999999999999999999887776666543 2211 1111 1000
Q ss_pred HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHH
Q 008750 188 EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267 (555)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqR 267 (555)
.. .+. . +.. ....... ..++.+...++ . .. .....|.++.++
T Consensus 70 --------~~----~~~--~-~~~-----------------~~~~~~~-~~~~~~~~~~~-~-~~---~~~~~~~~~~~~ 111 (235)
T 2w0m_A 70 --------AK----QFN--W-DFE-----------------EYIEKKL-IIIDALMKEKE-D-QW---SLVNLTPEELVN 111 (235)
T ss_dssp --------HH----HTT--C-CCG-----------------GGBTTTE-EEEECCC-----C-TT---BCSSCCHHHHHH
T ss_pred --------HH----Hhc--c-hHH-----------------HHhhCCE-EEEeccccccC-c-ee---eecCCCHHHHHH
Confidence 00 000 0 000 0000000 00000000001 0 00 112459999999
Q ss_pred HHHHHHhccCCC--EEEEcCCCCCC--CHHHHHHHHHHH----cCCCceEEEEecCH--------HHHHhhcceeEEecC
Q 008750 268 MSLGKILLQDPD--LLLLDEPTNHL--DLDTIEWLEGYL----GKQDVPMVIISHDR--------AFLDQLCTKIVETEM 331 (555)
Q Consensus 268 v~lAraL~~~p~--lLlLDEPTs~L--D~~~~~~l~~~l----~~~~~tvIiiSHd~--------~~l~~~~dri~~l~~ 331 (555)
...+.+...+|+ +||+||||+.+ |+.....+.+.| ++.+.|||++||+. ..+.++||+|++|+.
T Consensus 112 ~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~ 191 (235)
T 2w0m_A 112 KVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRR 191 (235)
T ss_dssp HHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEE
T ss_pred HHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEE
Confidence 888888888999 99999999888 986666555544 45699999999999 458899999999986
Q ss_pred Ce
Q 008750 332 GV 333 (555)
Q Consensus 332 G~ 333 (555)
..
T Consensus 192 ~~ 193 (235)
T 2w0m_A 192 MI 193 (235)
T ss_dssp EE
T ss_pred Ee
Confidence 53
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.9e-18 Score=173.62 Aligned_cols=141 Identities=16% Similarity=0.165 Sum_probs=100.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEecccccCcCccHHHHHHHh
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
+|++++|+|+||||||||+++|+|+++|++|+|.+.+.+. .++|++|++..++..++.+++..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999999999999999999987542 488999998877777787776421
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHH
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (555)
.. . ..+ ..+++..|..+ .....++..++
T Consensus 181 ~~----------------~------------------------~~d--------~~llDt~G~~~----~~~~~~~eLs~ 208 (304)
T 1rj9_A 181 KA----------------R------------------------GYD--------LLFVDTAGRLH----TKHNLMEELKK 208 (304)
T ss_dssp HH----------------H------------------------TCS--------EEEECCCCCCT----TCHHHHHHHHH
T ss_pred Hh----------------C------------------------CCC--------EEEecCCCCCC----chHHHHHHHHH
Confidence 00 0 000 01234445421 11223455568
Q ss_pred HHHHHHHHhccCCC--EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHH
Q 008750 266 MRMSLGKILLQDPD--LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRA 317 (555)
Q Consensus 266 qRv~lAraL~~~p~--lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~ 317 (555)
||++|||||+.+|+ +|.|| |+++.+. ...+..+.+..+.|+|++||+..
T Consensus 209 ~r~~iaRal~~~P~~~lLvLD-a~t~~~~--~~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 209 VKRAIAKADPEEPKEVWLVLD-AVTGQNG--LEQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHCTTCCSEEEEEEE-TTBCTHH--HHHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHhhcCCCCeEEEEEc-HHHHHHH--HHHHHHHHHHcCCcEEEEECCcc
Confidence 99999999999999 77778 6666543 33444444455899999999843
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-18 Score=192.26 Aligned_cols=160 Identities=13% Similarity=0.050 Sum_probs=101.5
Q ss_pred ccEEEEeEEEEe-----CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCCceEEEEecc
Q 008750 96 SGVKLENISKSY-----KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSNMKIAFLSQE 169 (555)
Q Consensus 96 ~~i~l~nls~~y-----~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~~~ig~v~Q~ 169 (555)
+.|.+++...-. ++..+++|++|+ .+|++++|+||||||||||||+|+|+..+ ..|... ......+++++|
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~~v-pa~~~~i~~~~~- 652 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGSYV-PAQKVEIGPIDR- 652 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCB-SSSEEEECCCCE-
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCccc-chhcccceeHHH-
Confidence 457777753222 345799999999 99999999999999999999999997432 233211 111123455444
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
++...++.+++.
T Consensus 653 --i~~~~~~~d~l~------------------------------------------------------------------ 664 (800)
T 1wb9_A 653 --IFTRVGAADDLA------------------------------------------------------------------ 664 (800)
T ss_dssp --EEEEEC------------------------------------------------------------------------
T ss_pred --HHhhCCHHHHHH------------------------------------------------------------------
Confidence 222333333321
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHH----HHHHHHcC-CCceEEEEecCHHHHHhhcc
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE----WLEGYLGK-QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~----~l~~~l~~-~~~tvIiiSHd~~~l~~~~d 324 (555)
...+++|+++++ ++.+..++.+|+++||||||+|+|+.... .+.+.+.+ .|.++|++|||.++. .+||
T Consensus 665 -----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d 737 (800)
T 1wb9_A 665 -----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPE 737 (800)
T ss_dssp ----------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHH
T ss_pred -----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhh
Confidence 112357777765 44445568999999999998888874332 34444544 589999999999876 4888
Q ss_pred eeEEecCCe
Q 008750 325 KIVETEMGV 333 (555)
Q Consensus 325 ri~~l~~G~ 333 (555)
++..+.++.
T Consensus 738 ~~~~v~n~~ 746 (800)
T 1wb9_A 738 KMEGVANVH 746 (800)
T ss_dssp HSTTEEEEE
T ss_pred hhhceEEEE
Confidence 765554443
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.68 E-value=3.9e-19 Score=197.51 Aligned_cols=152 Identities=20% Similarity=0.321 Sum_probs=91.7
Q ss_pred ccEEEEeEEEEeCC--ceeeeee----------eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEEcCCC--
Q 008750 96 SGVKLENISKSYKG--VTVLKDV----------TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIKAKSN-- 160 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~v----------sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~~g~~-- 160 (555)
+.+.++||++.|+. +++|+.+ +|+++. +||||+||||||||+++|+|++.| ++|.|.++|.+
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 35889999999965 3455555 366654 999999999999999999999988 79999887643
Q ss_pred -----------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh
Q 008750 161 -----------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA 229 (555)
Q Consensus 161 -----------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
..++|++|++.+++..||.+|+..+... +.
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~--------------~~------------------------- 126 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNA--------------IA------------------------- 126 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHH--------------HH-------------------------
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHH--------------hc-------------------------
Confidence 2589999999888888888887432100 00
Q ss_pred cCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCC------CCCCCHHHHHHHHHHHc
Q 008750 230 VNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEP------TNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 230 ~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEP------Ts~LD~~~~~~l~~~l~ 303 (555)
....++. ++++.++.+....|+++|+||| |++||+.....+.+++.
T Consensus 127 -------------~~~~~~s---------------~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~ 178 (608)
T 3szr_A 127 -------------GEGMGIS---------------HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIK 178 (608)
T ss_dssp -------------CSSSCCC---------------SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHH
T ss_pred -------------CCccccc---------------hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHH
Confidence 0001111 1223334444568999999999 99999988877776654
Q ss_pred C-----CCceEEEEecCHH
Q 008750 304 K-----QDVPMVIISHDRA 317 (555)
Q Consensus 304 ~-----~~~tvIiiSHd~~ 317 (555)
+ .+.++++++||++
T Consensus 179 ~~l~~~~~iil~vvt~~~d 197 (608)
T 3szr_A 179 KYIQRQETISLVVVPSNVD 197 (608)
T ss_dssp HHTTSSSCCEEEEEESSSC
T ss_pred HHHhcCCCCceEEEeccch
Confidence 3 3788999999965
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.6e-16 Score=148.25 Aligned_cols=94 Identities=16% Similarity=0.264 Sum_probs=79.0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhcc----CCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcce
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQ----DPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~----~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dr 325 (555)
...+.+..||||||||++||++|+. +|+++||||||++||+.+...+.++|++ .+.++|+|||+...+ ..||+
T Consensus 57 ~~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~-~~ad~ 135 (173)
T 3kta_B 57 KDVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMM-ANADK 135 (173)
T ss_dssp SSCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-TTCSE
T ss_pred ccccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHH-HhCCE
Confidence 3456788999999999999999974 4699999999999999999999998864 467999999998776 68999
Q ss_pred eEEe--cCCeEeeccCChHHHHH
Q 008750 326 IVET--EMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 326 i~~l--~~G~~~~~~G~y~~~~~ 346 (555)
|+.+ ++|...++..++.++..
T Consensus 136 i~~v~~~~g~s~~~~~~~~~~~~ 158 (173)
T 3kta_B 136 IIGVSMRDGVSKVVSLSLEKAMK 158 (173)
T ss_dssp EEEEEEETTEEEEEECCHHHHHH
T ss_pred EEEEEecCCEEEEEEEEcHHHHH
Confidence 9855 58887777777776554
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-17 Score=173.48 Aligned_cols=139 Identities=16% Similarity=0.161 Sum_probs=99.3
Q ss_pred EeEEEEeC--CceeeeeeeE-------EEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCCCce------EE
Q 008750 101 ENISKSYK--GVTVLKDVTW-------EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNMK------IA 164 (555)
Q Consensus 101 ~nls~~y~--~~~vL~~vsl-------~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~~~~------ig 164 (555)
.+++++|- ..+.|+++.+ .+.+|++++|+||||||||||+++|+|+++|+ .|.|...+.+.. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~ 171 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKC 171 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSS
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhcccc
Confidence 46666662 2346677766 67889999999999999999999999999987 566653322110 01
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
+++|..
T Consensus 172 ~v~q~~-------------------------------------------------------------------------- 177 (356)
T 3jvv_A 172 LVNQRE-------------------------------------------------------------------------- 177 (356)
T ss_dssp EEEEEE--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 111110
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcc
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~d 324 (555)
.+. ..++-.+ +||+||..+|++||+|||| |.++.+.+.+.. ..|.|||+++|+.+.+ ..||
T Consensus 178 -~~~---------~~~~~~~----~La~aL~~~PdvillDEp~---d~e~~~~~~~~~-~~G~~vl~t~H~~~~~-~~~d 238 (356)
T 3jvv_A 178 -VHR---------DTLGFSE----ALRSALREDPDIILVGEMR---DLETIRLALTAA-ETGHLVFGTLHTTSAA-KTID 238 (356)
T ss_dssp -BTT---------TBSCHHH----HHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEESCSSHH-HHHH
T ss_pred -ecc---------ccCCHHH----HHHHHhhhCcCEEecCCCC---CHHHHHHHHHHH-hcCCEEEEEEccChHH-HHHH
Confidence 000 1122222 9999999999999999999 888877766654 3589999999999998 6799
Q ss_pred eeEEecCC
Q 008750 325 KIVETEMG 332 (555)
Q Consensus 325 ri~~l~~G 332 (555)
|++.|..|
T Consensus 239 Rli~l~~~ 246 (356)
T 3jvv_A 239 RVVDVFPA 246 (356)
T ss_dssp HHHHTSCH
T ss_pred HHhhhcCc
Confidence 99887443
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.67 E-value=3.3e-18 Score=181.10 Aligned_cols=161 Identities=15% Similarity=0.135 Sum_probs=97.6
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEcCC-C---ceEEEEec
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKAKS-N---MKIAFLSQ 168 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~g~-~---~~ig~v~Q 168 (555)
.++|.++||+++|+++.+++++||+| +|||+||||||||+++|+|...|+.| .+.+... . ..+++++|
T Consensus 9 ~~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q 82 (418)
T 2qag_C 9 EGYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIK 82 (418)
T ss_dssp ------CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC--
T ss_pred cCcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEe
Confidence 35689999999999889999999998 99999999999999999999876544 2211111 1 24788888
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
+..+...+||+|++..... .. . . ..+ ..+...+.
T Consensus 83 ~~~~~~~Ltv~Dt~g~~~~--~~-------------~----~--------------------~~~---~~i~~~i~---- 116 (418)
T 2qag_C 83 EGGVQLLLTIVDTPGFGDA--VD-------------N----S--------------------NCW---QPVIDYID---- 116 (418)
T ss_dssp ----CEEEEEEECC--------------------------------------------------C---HHHHHHHH----
T ss_pred cCCcccceeeeechhhhhh--cc-------------c----h--------------------hhH---HHHHHHHH----
Confidence 8777667788776532110 00 0 0 000 00001111
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCC---EEEEcCCC-CCCCHHHHHHHHHHHcCCCceEEEEecCHHH
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPD---LLLLDEPT-NHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~---lLlLDEPT-s~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~ 318 (555)
..++.+++||++|||+++.+|+ +|++|||| ++||+....++.. |.. +.++|+|.|..+.
T Consensus 117 ---------~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~-L~~-~v~iIlVinK~Dl 179 (418)
T 2qag_C 117 ---------SKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKR-LHE-KVNIIPLIAKADT 179 (418)
T ss_dssp ---------HHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHH-HTT-TSEEEEEEESTTS
T ss_pred ---------HHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHH-Hhc-cCcEEEEEEcccC
Confidence 0244566778999999999999 99999999 6999988766654 443 7888888886543
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-18 Score=166.57 Aligned_cols=180 Identities=11% Similarity=0.096 Sum_probs=95.7
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCCC---ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSN---MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~g~~---~~ig~v~Q 168 (555)
+|+++|++|.|+ .+++++ |.+.+|.+++|+|+||||||||++.|+|.. .|+.|.+...+.- ..+-+ ..
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l-~D 78 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRL-VD 78 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEE-EE
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEE-EE
Confidence 489999999997 467887 889999999999999999999999999998 7888876532100 00111 11
Q ss_pred ccccCc-C--ccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 169 EFEVSM-S--RTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 169 ~~~~~~-~--~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
.+.... . ....+.+.. .+......... .+..-.+... .......+..+..++..
T Consensus 79 t~G~~~~~~~~~~~~~~~~----------~~~~~~~~~~~-~~~~~~v~d~------------~~~~~~~~~~~~~~~~~ 135 (210)
T 1pui_A 79 LPGYGYAEVPEEMKRKWQR----------ALGEYLEKRQS-LQGLVVLMDI------------RHPLKDLDQQMIEWAVD 135 (210)
T ss_dssp CCCCC------CCHHHHHH----------HHHHHHHHCTT-EEEEEEEEET------------TSCCCHHHHHHHHHHHH
T ss_pred CcCCcccccCHHHHHHHHH----------HHHHHHHhhhc-ccEEEEEEEC------------CCCCchhHHHHHHHHHH
Confidence 111100 0 000000000 00000000000 0000000000 00001122344555666
Q ss_pred cCCCccccCCCCCCCChHHHHH-HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 246 LGFTADDGDRLVASFSSGWQMR-MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqR-v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
.+++......++..+|+||+|| +.++++++.+|.++++|||||++|...+..+.+.|.
T Consensus 136 ~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~ 194 (210)
T 1pui_A 136 SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD 194 (210)
T ss_dssp TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence 7776444455677899999999 899999999999999999999999998888887764
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.65 E-value=2.1e-16 Score=158.83 Aligned_cols=146 Identities=17% Similarity=0.172 Sum_probs=91.0
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----CceEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~----~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
|++|++++|+|+||||||||++.|++.+. .|.+.+ |. ...+.|+..+.. .. .+.. +
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~-g~~~~~~~~v~~~~~e~~------~~-~~~~----------r 86 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLL-EVGELPTGPVIYLPAEDP------PT-AIHH----------R 86 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTT-CCCCCCCCCEEEEESSSC------HH-HHHH----------H
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcC-CCccCCCccEEEEECCCC------HH-HHHH----------H
Confidence 78999999999999999999999998654 455432 22 124666654421 11 1100 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
... +. ... .......+++.+++.. ..++++..||+||.+++ ++++
T Consensus 87 ~~~----~g-------------------------~~~--~~~~~~~~~~~l~l~~-~~~~~~~~ls~g~~~~i---~~l~ 131 (279)
T 1nlf_A 87 LHA----LG-------------------------AHL--SAEERQAVADGLLIQP-LIGSLPNIMAPEWFDGL---KRAA 131 (279)
T ss_dssp HHH----HH-------------------------TTS--CHHHHHHHHHHEEECC-CTTSCCCTTSHHHHHHH---HHHH
T ss_pred HHH----HH-------------------------hhc--ChhhhhhccCceEEee-cCCCCcccCCHHHHHHH---HHhc
Confidence 000 00 000 0112334455666543 34677889999997765 6788
Q ss_pred cCCCEEEEcCCCC--CCCHHH---HHHHHHH----HcCCCceEEEEecCHHHHH
Q 008750 276 QDPDLLLLDEPTN--HLDLDT---IEWLEGY----LGKQDVPMVIISHDRAFLD 320 (555)
Q Consensus 276 ~~p~lLlLDEPTs--~LD~~~---~~~l~~~----l~~~~~tvIiiSHd~~~l~ 320 (555)
.+|+++|+||||+ ++|... ...+.+. .++.|+|||+|+|+.....
T Consensus 132 ~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~~ 185 (279)
T 1nlf_A 132 EGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGAA 185 (279)
T ss_dssp TTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC-----
T ss_pred CCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCccc
Confidence 8999999999999 999732 2333333 3456999999999987664
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.63 E-value=1.1e-17 Score=173.78 Aligned_cols=152 Identities=16% Similarity=0.163 Sum_probs=90.6
Q ss_pred eeeeee-eEEEECCCEEEEEcCCCccHHHHHHHHHcCC--CCCc----eE-EEEcCCCc----eEEEEecccccCcCccH
Q 008750 111 TVLKDV-TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE--EPDS----GN-VIKAKSNM----KIAFLSQEFEVSMSRTV 178 (555)
Q Consensus 111 ~vL~~v-sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~--~p~~----G~-I~~~g~~~----~ig~v~Q~~~~~~~~tv 178 (555)
+.|+.+ ++.|++|++++|+|+||||||||++.|++.. +|++ |. |++++... ++++++|.+.++
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~----- 192 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLD----- 192 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCC-----
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCC-----
Confidence 456655 6899999999999999999999999999998 6776 56 55554321 111111111110
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCC
Q 008750 179 REEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258 (555)
Q Consensus 179 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~ 258 (555)
. ..+++.+-+. +.
T Consensus 193 --------------------------------------------------------~----~~v~~ni~~~-----~~-- 205 (349)
T 1pzn_A 193 --------------------------------------------------------P----DEVLKHIYVA-----RA-- 205 (349)
T ss_dssp --------------------------------------------------------H----HHHGGGEEEE-----EC--
T ss_pred --------------------------------------------------------H----HHHhhCEEEE-----ec--
Confidence 0 0111211110 00
Q ss_pred CCChHHHHHHHHHHHhc-------cCCCEEEEcCCCCCCCHHH------------HHHHHHHH----cCCCceEEEEecC
Q 008750 259 SFSSGWQMRMSLGKILL-------QDPDLLLLDEPTNHLDLDT------------IEWLEGYL----GKQDVPMVIISHD 315 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~-------~~p~lLlLDEPTs~LD~~~------------~~~l~~~l----~~~~~tvIiiSHd 315 (555)
.-|++++|++.++++++ .+|++||+||||++||+.. ...+...| ++.+.|||+++|+
T Consensus 206 ~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~ 285 (349)
T 1pzn_A 206 FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQV 285 (349)
T ss_dssp CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEccc
Confidence 12678888999998888 6899999999999999852 23333333 4579999999999
Q ss_pred HHHHHhhcceeEEecCCeE
Q 008750 316 RAFLDQLCTKIVETEMGVS 334 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~ 334 (555)
.......++.+.....|.+
T Consensus 286 ~~~~~~~~~~~~~~~~G~~ 304 (349)
T 1pzn_A 286 QARPDAFFGDPTRPIGGHI 304 (349)
T ss_dssp C---------------CCC
T ss_pred ccccccccCCccccCCcce
Confidence 8766544444455555554
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.5e-15 Score=144.55 Aligned_cols=74 Identities=18% Similarity=0.182 Sum_probs=56.6
Q ss_pred CCChHH--HHHHHHHHHhccC-CCEEEEcCCCCCCCHHH--------HHH----HHHHHcCCCceEEEEecCHH------
Q 008750 259 SFSSGW--QMRMSLGKILLQD-PDLLLLDEPTNHLDLDT--------IEW----LEGYLGKQDVPMVIISHDRA------ 317 (555)
Q Consensus 259 ~LSGGq--rqRv~lAraL~~~-p~lLlLDEPTs~LD~~~--------~~~----l~~~l~~~~~tvIiiSHd~~------ 317 (555)
.+|+++ +++++.+++++.+ |+++|+||||+.+|... ... |.++.++.+.|+|+++|...
T Consensus 84 ~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~ 163 (220)
T 2cvh_A 84 TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEM 163 (220)
T ss_dssp CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSS
T ss_pred ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCc
Confidence 445554 5688888999986 99999999999999732 122 33334456899999999875
Q ss_pred -------HHHhhcceeEEecCC
Q 008750 318 -------FLDQLCTKIVETEMG 332 (555)
Q Consensus 318 -------~l~~~~dri~~l~~G 332 (555)
.+.++||+|++|+..
T Consensus 164 ~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 164 TKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCSCCCHHHHHTSSEEEEEEEC
T ss_pred cccCCCcceeecCcEEEEEEEe
Confidence 678899999999754
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.7e-16 Score=162.82 Aligned_cols=124 Identities=22% Similarity=0.276 Sum_probs=92.5
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCC-ceEEEEcCCCc------eEEEEecccccCcCccHHHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPD-SGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~-~G~I~~~g~~~------~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.+|++++ +++|++++|+|+||||||||+++|+|+++|+ +|+|.+.+.+. .++|++|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q~-------------- 189 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQR-------------- 189 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEEE--------------
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEee--------------
Confidence 3567666 7899999999999999999999999999998 89997654322 11222221
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChH
Q 008750 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (555)
.+|+. +..|
T Consensus 190 -------------------------------------------------------------~~g~~-------~~~~--- 198 (372)
T 2ewv_A 190 -------------------------------------------------------------EVGED-------TKSF--- 198 (372)
T ss_dssp -------------------------------------------------------------EBTTT-------BSCS---
T ss_pred -------------------------------------------------------------ecCCC-------HHHH---
Confidence 12221 2345
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEe
Q 008750 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329 (555)
Q Consensus 264 qrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l 329 (555)
+.+|+++|..+|++||+|||+ |.+....+.+.. ..|.++|+++|+.+ +..+|||++.|
T Consensus 199 ---~~~l~~~L~~~pd~illdE~~---d~e~~~~~l~~~-~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 199 ---ADALRAALREDPDVIFVGEMR---DLETVETALRAA-ETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp ---HHHHHHHTTSCCSEEEESCCC---SHHHHHHHHHHH-TTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred ---HHHHHHHhhhCcCEEEECCCC---CHHHHHHHHHHH-hcCCEEEEEECcch-HHHHHHHHHHh
Confidence 469999999999999999999 887766555544 45889999999966 56778887655
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-16 Score=163.99 Aligned_cols=144 Identities=12% Similarity=0.122 Sum_probs=105.7
Q ss_pred EEEeEEEE---eCC--ceee---------eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---
Q 008750 99 KLENISKS---YKG--VTVL---------KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--- 161 (555)
Q Consensus 99 ~l~nls~~---y~~--~~vL---------~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--- 161 (555)
++++++|+ |+. .++| +++||.|++|++++|+|+||||||||+++|+|+++|++|.|.+++...
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 67888888 753 3455 999999999999999999999999999999999999999999986421
Q ss_pred -----eEEEEe-cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccH
Q 008750 162 -----KIAFLS-QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTL 235 (555)
Q Consensus 162 -----~ig~v~-Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (555)
.++|++ |+..
T Consensus 217 ~~~~~~v~~v~~q~~~---------------------------------------------------------------- 232 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAK---------------------------------------------------------------- 232 (361)
T ss_dssp TTCSSEEEEECC--------------------------------------------------------------------
T ss_pred cccCCEEEEeecCccc----------------------------------------------------------------
Confidence 233333 2110
Q ss_pred HHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecC
Q 008750 236 DAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD 315 (555)
Q Consensus 236 ~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd 315 (555)
..++++..++..|+.++..+|+.+++|||+.. ...+.+ +.+..-..|+|.++|+
T Consensus 233 ----------------------~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~---~~~~~l-~~l~~g~~~~l~t~H~ 286 (361)
T 2gza_A 233 ----------------------EEENAPVTAATLLRSCLRMKPTRILLAELRGG---EAYDFI-NVAASGHGGSITSCHA 286 (361)
T ss_dssp ----------------------------CCHHHHHHHHTTSCCSEEEESCCCST---HHHHHH-HHHHTTCCSCEEEEEC
T ss_pred ----------------------cccccccCHHHHHHHHHhcCCCEEEEcCchHH---HHHHHH-HHHhcCCCeEEEEECC
Confidence 01234456888999999999999999999962 444433 3333334578999999
Q ss_pred HHHHHhhcceeEEecCCe
Q 008750 316 RAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~ 333 (555)
.+ +...++|++.+..+.
T Consensus 287 ~~-~~~~~~Rl~~l~~~~ 303 (361)
T 2gza_A 287 GS-CELTFERLALMVLQN 303 (361)
T ss_dssp SS-HHHHHHHHHHHHTTS
T ss_pred CC-HHHHHHHHHHHHhcc
Confidence 76 667899999887663
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.5e-16 Score=151.04 Aligned_cols=134 Identities=12% Similarity=0.163 Sum_probs=87.2
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCC--CceEEEEcCCCc------eEEEEecccccCcCccHHHHHHHhhHH
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEP--DSGNVIKAKSNM------KIAFLSQEFEVSMSRTVREEFMSAFKE 188 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p--~~G~I~~~g~~~------~ig~v~Q~~~~~~~~tv~e~~~~~~~~ 188 (555)
.-..++|++++|+||||||||||+++|+|+++| ..|.|.+.+.+. .++|++|++..+..+++...|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f------ 83 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAF------ 83 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCE------
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHH------
Confidence 345789999999999999999999999999986 688888765432 367788765432211110000
Q ss_pred HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH
Q 008750 189 EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268 (555)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv 268 (555)
++.+.+. ..+.|-.++.
T Consensus 84 ------------------------------------------------------~E~~~~~--------~~~yg~~~~~- 100 (219)
T 1s96_A 84 ------------------------------------------------------LEHAEVF--------GNYYGTSREA- 100 (219)
T ss_dssp ------------------------------------------------------EEEEEET--------TEEEEEEHHH-
T ss_pred ------------------------------------------------------HHHHHHH--------hccCCCCHHH-
Confidence 0000000 0011111222
Q ss_pred HHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCC
Q 008750 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMG 332 (555)
Q Consensus 269 ~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G 332 (555)
+..++..++++||| ||+.+...+.+.+. .+.||+++||+++.+.+ |+ +..|
T Consensus 101 --v~~~l~~G~illLD-----LD~~~~~~i~~~l~-~~~tI~i~th~~~~l~~---Rl--~~rG 151 (219)
T 1s96_A 101 --IEQVLATGVDVFLD-----IDWQGAQQIRQKMP-HARSIFILPPSKIELDR---RL--RGRG 151 (219)
T ss_dssp --HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT-TCEEEEEECSSHHHHHH---HH--HTTS
T ss_pred --HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc-CCEEEEEECCCHHHHHH---HH--HHcC
Confidence 33445568999999 99999999999887 58999999999999875 43 5555
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.5e-18 Score=181.43 Aligned_cols=166 Identities=14% Similarity=0.100 Sum_probs=98.3
Q ss_pred eeeeeeEEEEC--CCEEEEEcCCCccHHHHHHHHHcCCCCCc----eEEEEcCCCceEEEEecccccCcCccHHHHHHHh
Q 008750 112 VLKDVTWEVKK--GEKVGLVGVNGAGKTTQLRIIAGQEEPDS----GNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185 (555)
Q Consensus 112 vL~~vsl~i~~--Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~----G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~ 185 (555)
+.+.|+++|.+ |++++|+|+||||||||+++|+|+++|++ |+|.+++... ..+..+ ..... .++...
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~-----~~~~~~-~~~~~-~~I~~~ 229 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLG-----GDEQAM-QYSDY-PQMALG 229 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSS-----SCTTSS-CTTTH-HHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcC-----CCcccC-ChhHH-HHHHHH
Confidence 35679999999 99999999999999999999999999998 7766531100 000100 11112 222211
Q ss_pred hHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHH
Q 008750 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265 (555)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqr 265 (555)
...... +. ..+.+-+..++. ...+..+..+|+|++
T Consensus 230 ~q~~~~-------------------------------~~------------~t~~~nl~~~~~--~~~~~~~~~~~~~~~ 264 (365)
T 1lw7_A 230 HQRYID-------------------------------YA------------VRHSHKIAFIDT--DFITTQAFCIQYEGK 264 (365)
T ss_dssp HHHHHH-------------------------------HH------------HHHCSSEEEESS--CHHHHHHHHHHHHSC
T ss_pred HHHHHH-------------------------------HH------------HhccCCEEEEeC--CchHHHHHHHHHcCC
Confidence 110000 00 000000000110 111122335667778
Q ss_pred HHHHHHHHhc-cCCCEEEEcC---CC------CCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 266 MRMSLGKILL-QDPDLLLLDE---PT------NHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 266 qRv~lAraL~-~~p~lLlLDE---PT------s~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
++..+++++. .+|+++|||| |+ .++|+..+..+.+.| ++.+.++|+++|. ....++|+++..++
T Consensus 265 ~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 265 AHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp CCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 8888888874 6999999999 65 589988777777766 3458899999986 45666777765553
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=7.3e-16 Score=162.66 Aligned_cols=178 Identities=15% Similarity=0.107 Sum_probs=106.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCE--EEEEcCCCccHHHHHHHHHcCCCCCceEEEEc---C-CCceEEEEecccc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA---K-SNMKIAFLSQEFE 171 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~---g-~~~~ig~v~Q~~~ 171 (555)
+++++ ++.|++.+ |++|||+|++|++ +||||+||||||||+++|+|+.- .|..... + ....++|++|++.
T Consensus 17 l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l--~g~~~~~~~~~~~~~~i~~v~Q~~~ 92 (427)
T 2qag_B 17 VPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF--EGEPATHTQPGVQLQSNTYDLQESN 92 (427)
T ss_dssp CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC---------CCSSCEEEEEEEEEEC--
T ss_pred EEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc--cCCcCCCCCccceEeeEEEEeecCc
Confidence 66777 88998888 9999999999999 99999999999999999999851 2211110 0 0125899999988
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhc-CCCc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPEL-GFTA 250 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-gl~~ 250 (555)
+++.+||.+++..+... .....+..+. ..+...+..+|... ++..
T Consensus 93 l~~~ltv~D~~~~g~~~--~~~~~~~~i~--------------------------------~~i~~q~~~~L~e~~~i~r 138 (427)
T 2qag_B 93 VRLKLTIVSTVGFGDQI--NKEDSYKPIV--------------------------------EFIDAQFEAYLQEELKIRR 138 (427)
T ss_dssp CEEEEEEEEEECCCC-C--CHHHHSHHHH--------------------------------HHHHHHHHHHHHHC--CCC
T ss_pred cccccchhhhhhhhhcc--ccchhhhHHH--------------------------------HHHHHHHHHHHHHHHhhhh
Confidence 77777887775332110 0000000000 01122233333332 2210
Q ss_pred ---cccCCCC-----------CCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH----HcCCCceEEEE
Q 008750 251 ---DDGDRLV-----------ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVII 312 (555)
Q Consensus 251 ---~~~~~~~-----------~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~----l~~~~~tvIii 312 (555)
...+..+ ..|+-.+ +.|+++|..+++|+++||||..|.+.....+.+. |...|.+|+.+
T Consensus 139 ~l~~~~d~rVh~~v~fI~d~~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~i 215 (427)
T 2qag_B 139 VLHTYHDSRIHVCLYFIAPTGHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQF 215 (427)
T ss_dssp CCCCSCC--CCEEEEEECCCC---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCC
T ss_pred hhcccccccccEEEEEEeCCCCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEec
Confidence 0011110 2456555 7999999999999999999999998776665544 55679999999
Q ss_pred ecCH
Q 008750 313 SHDR 316 (555)
Q Consensus 313 SHd~ 316 (555)
|.|-
T Consensus 216 s~~d 219 (427)
T 2qag_B 216 PTDD 219 (427)
T ss_dssp C---
T ss_pred CCCc
Confidence 9763
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-16 Score=147.15 Aligned_cols=83 Identities=22% Similarity=0.086 Sum_probs=71.3
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCce-----EEEEecccccC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMK-----IAFLSQEFEVS 173 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~-----ig~v~Q~~~~~ 173 (555)
..+|+++.|+++.++++|||+|++|++++|+|+||||||||+|+|+|++ |++|+|.++|.+.. ..+++|++.++
T Consensus 9 ~~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~~l~ 87 (158)
T 1htw_A 9 PDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHFDLY 87 (158)
T ss_dssp CSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEEECT
T ss_pred CCHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceeccccc
Confidence 3356778888778999999999999999999999999999999999999 99999998876541 12689998887
Q ss_pred cCccHHHHHH
Q 008750 174 MSRTVREEFM 183 (555)
Q Consensus 174 ~~~tv~e~~~ 183 (555)
.+|+.+|+.
T Consensus 88 -~ltv~e~l~ 96 (158)
T 1htw_A 88 -RLADPEELE 96 (158)
T ss_dssp -TCSCTTHHH
T ss_pred -cCCcHHHHH
Confidence 889988874
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-16 Score=150.12 Aligned_cols=154 Identities=15% Similarity=0.052 Sum_probs=91.3
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecccccCcCccHHHHHHHhhHHHH
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (555)
.|++|++++|+|+||||||||+++|+|. |+.|.|.+++.+. .++|++|+.. ...++.+++.....
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~~~~--- 77 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAADVAG--- 77 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHHHHH---
Confidence 4779999999999999999999999998 7889999886432 1345555432 23355554422100
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc-ccCCCCCCCChHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD-DGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~-~~~~~~~~LSGGqrqRv~ 269 (555)
. .... +... .++.++..+++... ..+.++..+|+|++|+++
T Consensus 78 --------~--~~~~-------------------------~~~~---~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~ 119 (191)
T 1zp6_A 78 --------R--YAKE-------------------------GYFV---ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEA 119 (191)
T ss_dssp --------H--HHHT-------------------------SCEE---EECSCCCTTTTHHHHTTCSCEEEEEEECCHHHH
T ss_pred --------H--Hhcc-------------------------CCeE---EEeccCcHHHHHHHHhcCCCeEEEEecCCHHHH
Confidence 0 0000 0000 00001111122100 003345679999999999
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCC--ceEEEEecCHHHHHhhccee
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQD--VPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~--~tvIiiSHd~~~l~~~~dri 326 (555)
++|++..+|+++ +|+...+.+.+.+.... ..+++.|++. .++.++++|
T Consensus 120 ~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~~~~i~t~~~-~~~~~~~~i 169 (191)
T 1zp6_A 120 IERCLDRGGDSL--------SDPLVVADLHSQFADLGAFEHHVLPVSGK-DTDQALQSA 169 (191)
T ss_dssp HHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGGGGEEECTTC-CTTTTTTTT
T ss_pred HHHHHhcCCCcc--------CCHHHHHHHHHHHhccCcccccEEECCCC-CHHHHHHHH
Confidence 999999999976 68888888888775431 1344445432 233445554
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.9e-17 Score=177.52 Aligned_cols=124 Identities=10% Similarity=0.044 Sum_probs=91.7
Q ss_pred CceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-E-EEECCce-eeeEEEecCCc
Q 008750 422 RSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-E-VLLGEHN-VLPNYFEQNQA 498 (555)
Q Consensus 422 ~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G-~-v~~~~~~-~~~~y~~Q~~~ 498 (555)
.+.++++|+++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| . |.+++.. -.++|++|+..
T Consensus 116 ~~mi~~~nl~~~y~------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~~~~~i~~vpq~~~ 189 (460)
T 2npi_A 116 HTMKYIYNLHFMLE------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLDPQQPIFTVPGCIS 189 (460)
T ss_dssp CTHHHHHHHHHHHH------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECCTTSCSSSCSSCCE
T ss_pred cchhhhhhhhehhh------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCCccCCeeeeccchh
Confidence 34578888888874 68999999999999999999999999999999999999 8 9887632 13578888752
Q ss_pred c-CCCCCCCHHHHHHhhcc---c-CcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 499 E-ALDLDKTVLETVAEAAE---D-WRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 499 ~-~l~~~~tv~e~l~~~~~---~-~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
. .+....|+.+++ .... . .....+..++..+|+.. ..+ +..|||||||||+||
T Consensus 190 l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~ll~~~gl~~-~~~--~~~LSgGq~qrlalA 247 (460)
T 2npi_A 190 ATPISDILDAQLPT-WGQSLTSGATLLHNKQPMVKNFGLER-INE--NKDLYLECISQLGQV 247 (460)
T ss_dssp EEECCSCCCTTCTT-CSCBCBSSCCSSCCBCCEECCCCSSS-GGG--CHHHHHHHHHHHHHH
T ss_pred hcccccccchhhhh-cccccccCcchHHHHHHHHHHhCCCc-ccc--hhhhhHHHHHHHHHH
Confidence 1 123445777776 2211 0 01123455788888853 233 889999999999985
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=133.08 Aligned_cols=31 Identities=23% Similarity=0.208 Sum_probs=28.2
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHc--CCCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEP 149 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p 149 (555)
-|++|++++|+|+||||||||++.|++ ..+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~ 52 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPI 52 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCG
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCch
Confidence 488999999999999999999999999 5555
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-16 Score=159.78 Aligned_cols=107 Identities=21% Similarity=0.208 Sum_probs=77.9
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCC
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDL 503 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~ 503 (555)
.|+++||+|.|+ ..+|+++||+|++|++++|+||||||||||+++|+|++ +|.|. .|++|++ .++.
T Consensus 101 ~i~~~~vs~~y~-~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~--------~~v~q~~--~lf~ 166 (305)
T 2v9p_A 101 FFNYQNIELITF-INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL--------SFANHKS--HFWL 166 (305)
T ss_dssp HHHHTTCCHHHH-HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE--------CGGGTTS--GGGG
T ss_pred eEEEEEEEEEcC-hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE--------EEecCcc--cccc
Confidence 378899999997 67999999999999999999999999999999999998 78874 2456764 2322
Q ss_pred CCCHHH-HHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhc
Q 008750 504 DKTVLE-TVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVN 551 (555)
Q Consensus 504 ~~tv~e-~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~R 551 (555)
.|+.+ ++... ++.. ..+...+..+ ++ +.++ +..||||||||
T Consensus 167 -~ti~~~ni~~~-~~~~-~~~~~~i~~~-L~-~gld--g~~LSgGqkQR 208 (305)
T 2v9p_A 167 -ASLADTRAALV-DDAT-HACWRYFDTY-LR-NALD--GYPVSIDRKHK 208 (305)
T ss_dssp -GGGTTCSCEEE-EEEC-HHHHHHHHHT-TT-GGGG--TCCEECCCSSC
T ss_pred -ccHHHHhhccC-cccc-HHHHHHHHHH-hH-ccCC--ccCcCHHHHHH
Confidence 35554 44332 1222 1344555554 32 2333 78999999999
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=5.1e-16 Score=158.59 Aligned_cols=118 Identities=11% Similarity=-0.019 Sum_probs=89.3
Q ss_pred eEEEEeeeEEcCCccceeceEEE-----------------------EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLT-----------------------IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~-----------------------i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~ 480 (555)
.|++++|++.|. ++++.++|. +.+|++|+|+||||||||||+++|+|+++|..|.
T Consensus 43 ~i~~~~v~~~y~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~ 120 (312)
T 3aez_A 43 QIDLLEVEEVYL--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH 120 (312)
T ss_dssp CCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC
T ss_pred eEEeeehhhhhh--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC
Confidence 478899999994 566666654 8999999999999999999999999999997663
Q ss_pred EEECCceeeeEEEecCCccCCCCCCCHHHHHHhhc----c-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 481 VLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA----E-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 481 v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~----~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
-.++|++|+. .+.+. |+.+++.... + ......+...|..++ . ...+.++..|||||+|||++|
T Consensus 121 -------~~v~~v~qd~--~~~~~-t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~-~-~~~~~~~~~lS~G~~qRv~~a 188 (312)
T 3aez_A 121 -------PRVDLVTTDG--FLYPN-AELQRRNLMHRKGFPESYNRRALMRFVTSVK-S-GSDYACAPVYSHLHYDIIPGA 188 (312)
T ss_dssp -------CCEEEEEGGG--GBCCH-HHHHHTTCTTCTTSGGGBCHHHHHHHHHHHH-T-TCSCEEEEEEETTTTEEEEEE
T ss_pred -------CeEEEEecCc--cCCcc-cHHHHHHHHHhcCCChHHHHHHHHHHHHHhC-C-CcccCCcccCChhhhhhhhhH
Confidence 2367999985 24455 8998875321 1 223345667777776 3 234577889999999999864
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.42 E-value=5.6e-14 Score=145.39 Aligned_cols=116 Identities=17% Similarity=0.151 Sum_probs=83.7
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEc-CC------CceEEEEecccccCcCccHHHHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKA-KS------NMKIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~-g~------~~~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
-++++++.+ +|++++|+|+||||||||+++|+|+.. |+.|+|.+. |. ...+++++|+..++...+++++.+
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~~l 283 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREFGL 283 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHHTCCC
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHhhh
Confidence 355666643 899999999999999999999999999 999999875 42 236899999987777777776311
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChH
Q 008750 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (555)
.. +...++...+.++++.+|+. ...++.+.+|| |
T Consensus 284 ~~--------------------------------------------l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G 317 (358)
T 2rcn_A 284 WH--------------------------------------------LEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-G 317 (358)
T ss_dssp CC--------------------------------------------CCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-T
T ss_pred cC--------------------------------------------CCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-H
Confidence 00 11112334566778888885 46788899999 9
Q ss_pred HHHHHHHHHHh
Q 008750 264 WQMRMSLGKIL 274 (555)
Q Consensus 264 qrqRv~lAraL 274 (555)
|+||++||+++
T Consensus 318 ~~~r~ala~gl 328 (358)
T 2rcn_A 318 CAIREAVENGA 328 (358)
T ss_dssp CHHHHHHHHTS
T ss_pred HHHHHHHHhcC
Confidence 99999999886
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.42 E-value=6.8e-17 Score=152.56 Aligned_cols=163 Identities=12% Similarity=0.049 Sum_probs=97.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLER 198 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~ 198 (555)
|++++|+|+||||||||+++|++ |..|.+.+++.. ..+++++|.....+..++.+++.....
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------- 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNITDLTV----------- 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTTCCTTCCCGGGCHHHHHHHHHHHHHHHH-----------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhhhccccccCccchhHHHHHHHHHHHHHH-----------
Confidence 67899999999999999999997 678988887532 124556654432233344444321100
Q ss_pred HHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC--ChHHHHHHHHHH----
Q 008750 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF--SSGWQMRMSLGK---- 272 (555)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L--SGGqrqRv~lAr---- 272 (555)
..... +. ..+++.+.. ... .+.+..+ |+|++|++.++.
T Consensus 68 --~~~~~-------------------------~~-------~~ild~~~~-~~~-~~~~~~~~~s~g~~~~~~~i~L~~~ 111 (189)
T 2bdt_A 68 --NFLLA-------------------------QN-------DVVLDYIAF-PDE-AEALAQTVQAKVDDVEIRFIILWTN 111 (189)
T ss_dssp --HHHHT-------------------------TC-------EEEEESCCC-HHH-HHHHHHHHHHHCSSEEEEEEEEECC
T ss_pred --HHHhc-------------------------CC-------cEEEeeccC-HHH-HHHHHHHHHhcccCCCeEEEEEeCC
Confidence 00000 00 001111110 000 0111234 888888887777
Q ss_pred --HhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecC-HHHHHhhcceeEEecCCeEeeccCChH
Q 008750 273 --ILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHD-RAFLDQLCTKIVETEMGVSRTYEGNYS 342 (555)
Q Consensus 273 --aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd-~~~l~~~~dri~~l~~G~~~~~~G~y~ 342 (555)
+|+.+|....+|+ +||+..+.. ++.+ ...+.++|.+||. ++.+.++||+|+ ++|++ .+.|+.+
T Consensus 112 ~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~-~~~~~~~ 180 (189)
T 2bdt_A 112 REELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRF-IFCMAGD 180 (189)
T ss_dssp HHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGG-SCC----
T ss_pred HHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcE-EEeecCC
Confidence 8888888888884 799877666 4444 3457899999999 999999999998 88876 4556543
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-14 Score=146.78 Aligned_cols=155 Identities=14% Similarity=0.198 Sum_probs=106.1
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------------eEEEEecccccCcCccHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------------KIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------------~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.++|++++|+|+||||||||+++|+|+++|+.|+|.+.+.+. .+.+++|...+.+..++++|+.
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~ 205 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQ 205 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHH
Confidence 478999999999999999999999999999999999876442 3668999888877888888874
Q ss_pred HhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChH
Q 008750 184 SAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSG 263 (555)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGG 263 (555)
.+.. . ..+. -+++..|... .....+.+||
T Consensus 206 ~~~~-----------------~-----------------------~~d~--------vliDtaG~~~-~~~~l~~eL~-- 234 (328)
T 3e70_C 206 HAKA-----------------R-----------------------GIDV--------VLIDTAGRSE-TNRNLMDEMK-- 234 (328)
T ss_dssp HHHH-----------------H-----------------------TCSE--------EEEEECCSCC-TTTCHHHHHH--
T ss_pred HHHh-----------------c-----------------------cchh--------hHHhhccchh-HHHHHHHHHH--
Confidence 3210 0 0000 0133344321 1122233343
Q ss_pred HHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCH---------HHHHhhcceeEEecCCe
Q 008750 264 WQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR---------AFLDQLCTKIVETEMGV 333 (555)
Q Consensus 264 qrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~---------~~l~~~~dri~~l~~G~ 333 (555)
.+++++..++.+++||.+|. . ...+.+..+-+..+.|+||+||.- +.+....-.|.++..|.
T Consensus 235 -----~i~ral~~de~llvLDa~t~-~--~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge 305 (328)
T 3e70_C 235 -----KIARVTKPNLVIFVGDALAG-N--AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQ 305 (328)
T ss_dssp -----HHHHHHCCSEEEEEEEGGGT-T--HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSS
T ss_pred -----HHHHHhcCCCCEEEEecHHH-H--HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCC
Confidence 48999999999999996665 3 334444444445789999999953 33444456788887775
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2.2e-15 Score=148.51 Aligned_cols=143 Identities=20% Similarity=0.179 Sum_probs=86.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHH---cCCCCCceEEEEcCCC------ceEEEEecccccCcCccHHHHHHHhhHHHHHH
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVIKAKSN------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEI 192 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~~~g~~------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~ 192 (555)
++++++|+|+||||||||+++|+ |+..|+.|+|.+++.+ ..+.+++|+..+.+..++.+++...+..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~---- 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSELEN---- 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT----
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh----
Confidence 47999999999999999999999 9999999998776421 1123344544444455555554321100
Q ss_pred HHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh--hhcCC-----------CccccCCCCCC
Q 008750 193 AGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM--PELGF-----------TADDGDRLVAS 259 (555)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~lgl-----------~~~~~~~~~~~ 259 (555)
. .-.....+ .... . ...+..+. ..+++ -....++.+..
T Consensus 102 ------~--~~~~~il~-------------------g~~~-~-~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~ 152 (246)
T 2bbw_A 102 ------R--RGQHWLLD-------------------GFPR-T-LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP 152 (246)
T ss_dssp ------C--TTSCEEEE-------------------SCCC-S-HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET
T ss_pred ------c--CCCeEEEE-------------------CCCC-C-HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC
Confidence 0 00000000 0000 0 01111111 11110 01223677789
Q ss_pred CChHHHHHHHHHHHh-ccCCCEEEEc----CCCCCCCHHHHHHHHHHHcC
Q 008750 260 FSSGWQMRMSLGKIL-LQDPDLLLLD----EPTNHLDLDTIEWLEGYLGK 304 (555)
Q Consensus 260 LSGGqrqRv~lAraL-~~~p~lLlLD----EPTs~LD~~~~~~l~~~l~~ 304 (555)
||| |+ ++| +.+|++++|| |||++||....+.+.+.++.
T Consensus 153 lSg----rv---~al~~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~ 195 (246)
T 2bbw_A 153 PSG----RV---YNLDFNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQ 195 (246)
T ss_dssp TTT----EE---EETTTSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHH
T ss_pred CCC----Cc---cccccCCCcccccccccccccccCCCCcHHHHHHHHHH
Confidence 999 65 778 9999999999 99999999888887777654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.7e-16 Score=162.48 Aligned_cols=78 Identities=15% Similarity=0.191 Sum_probs=67.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------ce
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------MK 162 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~~ 162 (555)
+|+++|+++.|++..+|+++||++.+|++++|+|+||||||||+++|+|++.|++|+|.+.+.+ .+
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HHeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 3677888999977789999999999999999999999999999999999999999999876532 24
Q ss_pred EEEEecccccCc
Q 008750 163 IAFLSQEFEVSM 174 (555)
Q Consensus 163 ig~v~Q~~~~~~ 174 (555)
++|++|++.++.
T Consensus 109 i~~v~q~~~~~~ 120 (337)
T 2qm8_A 109 MARLAIDRNAFI 120 (337)
T ss_dssp STTGGGCTTEEE
T ss_pred heeeccCccccc
Confidence 788999877654
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.8e-15 Score=134.96 Aligned_cols=83 Identities=14% Similarity=0.041 Sum_probs=68.9
Q ss_pred EEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeee-----EEEecCCccCC
Q 008750 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLP-----NYFEQNQAEAL 501 (555)
Q Consensus 427 ~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~-----~y~~Q~~~~~l 501 (555)
.+++++.|+++.+++++||+|++|++++|+||||||||||+|+|+|.+ |++|.|.+++.++.. .|++|+. .+
T Consensus 10 ~~~~~~~~g~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~~~~~~~~q~~--~l 86 (158)
T 1htw_A 10 DEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEYNIAGKMIYHF--DL 86 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEEEETTEEEEEE--EC
T ss_pred CHHHHHHHHHHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeeccCCCcceecc--cc
Confidence 356677787777899999999999999999999999999999999999 999999988766521 2578874 35
Q ss_pred CCCCCHHHHHHh
Q 008750 502 DLDKTVLETVAE 513 (555)
Q Consensus 502 ~~~~tv~e~l~~ 513 (555)
. ..|+.+++..
T Consensus 87 ~-~ltv~e~l~~ 97 (158)
T 1htw_A 87 Y-RLADPEELEF 97 (158)
T ss_dssp T-TCSCTTHHHH
T ss_pred c-cCCcHHHHHH
Confidence 4 7888888854
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.1e-13 Score=147.80 Aligned_cols=147 Identities=17% Similarity=0.192 Sum_probs=98.7
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------------ceEEEEecccccCcCc
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------------MKIAFLSQEFEVSMSR 176 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------------~~ig~v~Q~~~~~~~~ 176 (555)
-+++||++.+|++++|||+||||||||+++|+|+++|+.|+|.+.+.+ ..|+|++|+..+++..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 478999999999999999999999999999999999999999986432 1479999988776777
Q ss_pred cHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 177 TVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 177 tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
++++++..+.. . ..+ .-+++..|..... ...
T Consensus 363 tV~e~l~~a~~-----------------~-----------------------~~D--------vVLIDTaGrl~~~-~~l 393 (503)
T 2yhs_A 363 VIFDAIQAAKA-----------------R-----------------------NID--------VLIADTAGRLQNK-SHL 393 (503)
T ss_dssp HHHHHHHHHHH-----------------T-----------------------TCS--------EEEECCCCSCCCH-HHH
T ss_pred HHHHHHHHHHh-----------------c-----------------------CCC--------EEEEeCCCccchh-hhH
Confidence 88887643210 0 000 0012333432111 111
Q ss_pred CCCCChHHHHHHHHHHHhc-cCCC-EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEec
Q 008750 257 VASFSSGWQMRMSLGKILL-QDPD-LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~-~~p~-lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSH 314 (555)
+.+| ++++.+++++. ..|+ +||...||++.|.. ..+..+-...+.|.||+||
T Consensus 394 m~EL----~kiv~iar~l~~~~P~evLLvLDattGq~al--~~ak~f~~~~~itgvIlTK 447 (503)
T 2yhs_A 394 MEEL----KKIVRVMKKLDVEAPHEVMLTIDASTGQNAV--SQAKLFHEAVGLTGITLTK 447 (503)
T ss_dssp HHHH----HHHHHHHHTTCTTCSSEEEEEEEGGGTHHHH--HHHHHHHHHTCCSEEEEEC
T ss_pred HHHH----HHHHHHHHHhccCCCCeeEEEecCcccHHHH--HHHHHHHhhcCCCEEEEEc
Confidence 1123 47888898774 4564 55555588886543 3333333456899999999
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.3e-15 Score=141.81 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=45.5
Q ss_pred EcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC-------ceeeeEEEecCC
Q 008750 433 GYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE-------HNVLPNYFEQNQ 497 (555)
Q Consensus 433 ~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~-------~~~~~~y~~Q~~ 497 (555)
.|+++.+|+++ .+||+++|+||||||||||+++|+|+ +|++|+|.... ..-.++|++|++
T Consensus 9 ~~g~~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~~~~~~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 9 TLGQKHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSRIILTRPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp SHHHHHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSEEEEEECSCCTTCCCCSSCC--
T ss_pred CHhHHHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeeeEEecCCchhhhcceEEecCCH
Confidence 35556688875 89999999999999999999999999 99999874310 011356888875
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-14 Score=143.32 Aligned_cols=97 Identities=14% Similarity=0.125 Sum_probs=58.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------eeEEEecCCccCCCCCCCHHHHHHhhccc---CcHH
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAED---WRID 521 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~---~~~~ 521 (555)
.++|+||||||||||+++|+|+..|++|+|.++|.++ .++|++|+. .+.+..||.|++...... ....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~--~~~~~ltv~d~~~~g~~~~~~~~~~ 81 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEG--GVKMKLTVIDTPGFGDQINNENCWE 81 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC------CCEEEEECCCC--CCSBCTTCSH
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecC--CCcCCceEEechhhhhhcccHHHHH
Confidence 5899999999999999999999999999998877543 367889874 466777888887544321 1112
Q ss_pred HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 522 ~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+..++. ....+..+..|||||||||++|
T Consensus 82 ~i~~~~~-----~~~~~~~~~~LS~G~~qrv~ia 110 (270)
T 3sop_A 82 PIEKYIN-----EQYEKFLKEEVNIARKKRIPDT 110 (270)
T ss_dssp HHHHHHH-----HHHHHHHHHHSCTTCCSSCCCC
T ss_pred HHHHHHH-----HHHHhhhHHhcCcccchhhhhh
Confidence 3333332 3345677889999999999886
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.35 E-value=1.8e-14 Score=153.64 Aligned_cols=121 Identities=16% Similarity=0.096 Sum_probs=88.1
Q ss_pred ceEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---ee----------
Q 008750 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NV---------- 488 (555)
Q Consensus 423 ~~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~---~~---------- 488 (555)
..++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|. .+
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4578899999997 56799999 999999999999999999999999999999999999998876 22
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|+. ..+....++.+++..... ++...+-.-..+-..+..||||| |||+||
T Consensus 209 ~~l~r~i~~v~q~~-~~~~~~~~v~~~~~~~ae---------~~~~~~~~v~~~ld~l~~lS~g~-qrvslA 269 (438)
T 2dpy_A 209 DGRARSVVIAAPAD-VSPLLRMQGAAYATRIAE---------DFRDRGQHVLLIMDSLTRYAMAQ-REIALA 269 (438)
T ss_dssp HHHHTEEEEEECTT-SCHHHHHHHHHHHHHHHH---------HHHTTTCEEEEEEECHHHHHHHH-HHHHHH
T ss_pred cccCceEEEEECCC-CCHHHHHHHHHHHHHHHH---------HHHhCCCCHHHHHHhHHHHHHHH-HHHHHH
Confidence 257889853 223345566666644321 11111100011223477899999 999875
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.1e-13 Score=146.28 Aligned_cols=147 Identities=22% Similarity=0.255 Sum_probs=91.3
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC-----------CCCceEEEEcCCCceEEEEecccccCcCccHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE-----------EPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVRE 180 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----------~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e 180 (555)
--++|+|+++.|+.++|||+||||||||+++|+|.. .|+.|.|.+++. .. -.+.+.+.+.... .+
T Consensus 146 ~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~~-~~-~~l~DtpGli~~a--~~ 221 (416)
T 1udx_A 146 EKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSEE-ER-FTLADIPGIIEGA--SE 221 (416)
T ss_dssp CEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSSS-CE-EEEEECCCCCCCG--GG
T ss_pred eEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEecCc-ce-EEEEeccccccch--hh
Confidence 358999999999999999999999999999999984 333344443320 01 1222222221100 00
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 181 EFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
+. .+. . .+ .. ..++++.++..+++. +.++.+|
T Consensus 222 ~~--~L~----------------------~--------~f---l~---------~~era~~lL~vvDls----~~~~~~l 253 (416)
T 1udx_A 222 GK--GLG----------------------L--------EF---LR---------HIARTRVLLYVLDAA----DEPLKTL 253 (416)
T ss_dssp SC--CSC----------------------H--------HH---HH---------HHTSSSEEEEEEETT----SCHHHHH
T ss_pred hh--hhh----------------------H--------HH---HH---------HHHHHHhhhEEeCCc----cCCHHHH
Confidence 00 000 0 00 00 001123345555553 4567789
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHH---HHHHHHHcCCCceEEEEec
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTI---EWLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~---~~l~~~l~~~~~tvIiiSH 314 (555)
|+|++|++++|++|+..|.+|+| |.+|.... ..+.+.+++.+.++|+||.
T Consensus 254 s~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 254 ETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHHHHHHHHHHHTTTSCEEECCT
T ss_pred HHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHHHHHHHHHHHhcCCeEEEEEC
Confidence 99999999999999999999999 99998543 3334445556777777763
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-15 Score=156.24 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=41.0
Q ss_pred CCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhh
Q 008750 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 259 ~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~ 322 (555)
+||+||+||+..+++++.+|+++ ||| ....+.+.+ +. .+.||+++||+...++.+
T Consensus 141 ~ls~g~~Q~~~ad~ill~k~dl~--de~-----~~l~~~l~~-l~-~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 141 QFTIAQSQVGYADRILLTKTDVA--GEA-----EKLHERLAR-IN-ARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp HCHHHHHHHHTCSEEEEECTTTC--SCT-----HHHHHHHHH-HC-SSSCEEECCSSCCCGGGG
T ss_pred hchHHHHHHHhCCEEEEECcccC--CHH-----HHHHHHHHH-hC-CCCeEEEecccCCCHHHH
Confidence 79999999999999999999987 999 222233322 33 578999999985544433
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1.7e-13 Score=135.03 Aligned_cols=110 Identities=15% Similarity=0.012 Sum_probs=67.1
Q ss_pred CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhh
Q 008750 435 EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEA 514 (555)
Q Consensus 435 ~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (555)
+++.+|+++||++.+|++|||+||||||||||+++|+|.+ |.+.++...-.++|++|+. +....|+.+++...
T Consensus 10 ~~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~~~~~~i~~v~~d~---~~~~l~~~~~~~~~ 82 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVEQRQRKVVILSQDR---FYKVLTAEQKAKAL 82 (245)
T ss_dssp -------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSCGGGCSEEEEEGGG---GBCCCCHHHHHHHH
T ss_pred CCceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhcccccCCceEEEeCCc---CccccCHhHhhhhh
Confidence 4557899999999999999999999999999999999965 3332221112467899873 44567888887543
Q ss_pred cc--------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 515 AE--------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 515 ~~--------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
.. ......+...|..+. ....+++..||+||++|+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~L~~l~---~~~~~~~~~ls~g~~~r~~~ 127 (245)
T 2jeo_A 83 KGQYNFDHPDAFDNDLMHRTLKNIV---EGKTVEVPTYDFVTHSRLPE 127 (245)
T ss_dssp TTCCCTTSGGGBCHHHHHHHHHHHH---TTCCEEECCEETTTTEECSS
T ss_pred ccCCCCCCcccccHHHHHHHHHHHH---CCCCeecccccccccCccCc
Confidence 21 122334555665541 23567889999999999864
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.8e-14 Score=133.46 Aligned_cols=43 Identities=14% Similarity=0.123 Sum_probs=36.0
Q ss_pred ccCCCEEEEcCCCC-CCCHHHHHHHHHHHc---CCCceEEEEecCHH
Q 008750 275 LQDPDLLLLDEPTN-HLDLDTIEWLEGYLG---KQDVPMVIISHDRA 317 (555)
Q Consensus 275 ~~~p~lLlLDEPTs-~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~ 317 (555)
+.+|++||||||++ ++|+...+.+.+++. +.++++|++||...
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCS
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCCh
Confidence 34899999999995 899999888887764 36899999999863
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-13 Score=132.76 Aligned_cols=99 Identities=13% Similarity=0.157 Sum_probs=57.5
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------eeEEEecCCccCCCCCCCH
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----------LPNYFEQNQAEALDLDKTV 507 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----------~~~y~~Q~~~~~l~~~~tv 507 (555)
-|+++||+|.+|++++|+||||||||||+++|+|++ | |.|.+ +.++ .++|++|++. .
T Consensus 12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~--------~ 79 (218)
T 1z6g_A 12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKT--------I 79 (218)
T ss_dssp ----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHH--------H
T ss_pred cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHH--------H
Confidence 589999999999999999999999999999999998 6 88887 3322 1346777642 1
Q ss_pred HHHHHh-----------h-cccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 508 LETVAE-----------A-AEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 508 ~e~l~~-----------~-~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
...+.. . ........+..++...... .++ ..|||||+||++|
T Consensus 80 ~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~---~~lsggq~qR~~i 133 (218)
T 1z6g_A 80 FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFE---MNINGVKQLKKST 133 (218)
T ss_dssp HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEE---ECHHHHHHHTTCS
T ss_pred HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEE---ecHHHHHHHHHHh
Confidence 111110 0 0011233455666554321 112 5789999999987
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.1e-15 Score=158.47 Aligned_cols=62 Identities=13% Similarity=0.220 Sum_probs=52.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
.++++++++.|+...+|+++ +. .+|++++|+|||||||||||++|+|++.|++|+|.+.+.+
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ 204 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDP 204 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESS
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEeccc
Confidence 45677777777666688888 53 8999999999999999999999999999999999887643
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3e-14 Score=150.33 Aligned_cols=110 Identities=16% Similarity=0.230 Sum_probs=82.5
Q ss_pred ccceeceEEEEecCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-eeEEEec
Q 008750 437 RLLFNRANLTIERGE--------------------KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-LPNYFEQ 495 (555)
Q Consensus 437 ~~ll~~vsl~i~~Ge--------------------~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-~~~y~~Q 495 (555)
+.+++++||+|++|+ +++|+||||||||||+++|+|+.+|++|.|.+++.++ +.+|++|
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q 115 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYK 115 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEE
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEecc
Confidence 458999999999999 9999999999999999999999999999998887543 2368888
Q ss_pred CCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChh--HHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG--EKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGG--ek~Rv~La 555 (555)
++ ..+..|+.|++...... ..+..+|..+++.. .+..+. |||| |+||+.||
T Consensus 116 ~~---~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--~~~~~~-lS~G~~~kqrv~la 168 (413)
T 1tq4_A 116 HP---NIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--YDFFII-ISATRFKKNDIDIA 168 (413)
T ss_dssp CS---SCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--CSEEEE-EESSCCCHHHHHHH
T ss_pred cc---ccCCeeehHhhcccchH---HHHHHHHHHcCCCc--cCCeEE-eCCCCccHHHHHHH
Confidence 74 23455666665332211 23567888888753 234444 9999 99999875
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.7e-12 Score=132.64 Aligned_cols=34 Identities=26% Similarity=0.291 Sum_probs=28.9
Q ss_pred EEECCCEEEEEcCCCccHHHHHH--HHHcCCCCCce
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLR--IIAGQEEPDSG 152 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk--~i~G~~~p~~G 152 (555)
-|++|++++|+|+||||||||++ ++.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 58899999999999999999999 44677776544
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.30 E-value=2.7e-12 Score=135.88 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=33.7
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.+|++++|++.+| +++|+|+|||||||||++|.++..
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999 999999999999999999966653
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-12 Score=134.67 Aligned_cols=139 Identities=12% Similarity=0.144 Sum_probs=78.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc-CCCCCceEEEEcCCC--------ceEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG-QEEPDSGNVIKAKSN--------MKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G-~~~p~~G~I~~~g~~--------~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
.+.|+||||+|||||+++|++ ++.|+.|.|.++|.. ..+++++|...+....+-.. . .
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~--------- 104 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMG-N---N--------- 104 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC--------C---------
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhhcC-C---c---------
Confidence 499999999999999999999 789999999877532 24667776654322111000 0 0
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
........+..+....++.. .. .||| +.
T Consensus 105 -----------------------------------~~~~~~~~i~~~~~~~~~~~-----~~-~ls~-----------l~ 132 (354)
T 1sxj_E 105 -----------------------------------DRIVIQELLKEVAQMEQVDF-----QD-SKDG-----------LA 132 (354)
T ss_dssp -----------------------------------CHHHHHHHHHHHTTTTC----------------------------
T ss_pred -----------------------------------chHHHHHHHHHHHHhccccc-----cc-cccc-----------cC
Confidence 00001111222222223211 11 5676 78
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHH-HhhcceeEEe
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIVET 329 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l-~~~~dri~~l 329 (555)
.+|+++|+|||++ ||..+.+.|.+.+.+ .+.++|++||++..+ ..+.+|+..+
T Consensus 133 ~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~ 188 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCLLI 188 (354)
T ss_dssp -CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCHHHHTTSEEE
T ss_pred CCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHHHHHhhceEE
Confidence 8999999999999 999999999998865 368999999997533 3445565443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-14 Score=133.40 Aligned_cols=37 Identities=19% Similarity=0.191 Sum_probs=31.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCC---ceEEEEcCCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPD---SGNVIKAKSN 160 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~---~G~I~~~g~~ 160 (555)
++++|+|+||||||||+++|+|+++|+ .|.|.+++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999988654
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-14 Score=157.07 Aligned_cols=185 Identities=14% Similarity=0.037 Sum_probs=107.3
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC-------ceEEEEecccccCcCccHHHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN-------MKIAFLSQEFEVSMSRTVREEFM 183 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~-------~~ig~v~Q~~~~~~~~tv~e~~~ 183 (555)
.++++++|.|++|+.++|+|+||||||||+++|+|+++|++|.|.+.+.. ..++++.|........+..+.+.
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~ 327 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLR 327 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHH
Confidence 47889999999999999999999999999999999999999999988753 13556665433212345655543
Q ss_pred HhhHH--------HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh-hcCCCcccc-
Q 008750 184 SAFKE--------EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP-ELGFTADDG- 253 (555)
Q Consensus 184 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~lgl~~~~~- 253 (555)
..+.. ++........++....+. .. ...+........+..+.. .++++....
T Consensus 328 ~~LR~~PD~iivgEir~~E~~~~l~a~~tGh--~~----------------~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~ 389 (511)
T 2oap_1 328 AALRQRPDYIIVGEVRGREAQTLFQAMSTGH--AS----------------YSTLHAGDINQMVYRLESEPLKVPRSMLQ 389 (511)
T ss_dssp TTGGGCCSEEEESCCCSTHHHHHHHHHHTTC--EE----------------EEEEECSSHHHHHHHHHSTTTCCCGGGGG
T ss_pred HhhccCCCeEEeCCcCHHHHHHHHHhhcCCC--Cc----------------ccccccCCHHHHHHHHHhcccccHHHHHh
Confidence 32210 000000000000000000 00 000001112222222221 133332111
Q ss_pred --C---CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEE--EecCHHHHHhhc
Q 008750 254 --D---RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVI--ISHDRAFLDQLC 323 (555)
Q Consensus 254 --~---~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIi--iSHd~~~l~~~~ 323 (555)
+ .....+||||+||+++|. + | |++||+.....+.+.+. ..+.|+|+ +||+++.+...|
T Consensus 390 ~l~~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 390 FLDIALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp GCCEEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred hccEEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 1 223468999999887651 1 7 99999977665555443 34788885 899999998887
Q ss_pred ce
Q 008750 324 TK 325 (555)
Q Consensus 324 dr 325 (555)
+.
T Consensus 458 g~ 459 (511)
T 2oap_1 458 GV 459 (511)
T ss_dssp TS
T ss_pred CC
Confidence 53
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.4e-12 Score=134.85 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=57.8
Q ss_pred ceEEEEeeeEEcC-CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 423 SVVTIKNLEFGYE-DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 423 ~~l~~~~l~~~y~-~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
.+++++++++.|+ +..+++++ |+|.+|++++|+||||||||||+++|+|+.+|+.|.|.+.|.
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~ 107 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGE 107 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESC
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecc
Confidence 4688999999997 66789999 999999999999999999999999999999999998887664
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.6e-13 Score=135.55 Aligned_cols=120 Identities=18% Similarity=0.140 Sum_probs=82.8
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCCCc----------eEEEEecccccC-----cCccHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEVS-----MSRTVREE 181 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~g~~~----------~ig~v~Q~~~~~-----~~~tv~e~ 181 (555)
+..|++++|+|+||||||||+++|+ +..|++|+|.+ .|.+. .+||++|+|.+. +.+|+ ++
T Consensus 162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e~ 239 (302)
T 2yv5_A 162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-RE 239 (302)
T ss_dssp HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-GG
T ss_pred hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-HH
Confidence 4469999999999999999999999 99999999998 66432 369999998653 56788 77
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHhhhcCCCccccCCCCCCC
Q 008750 182 FMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQA-VNLDTLDAKVSKLMPELGFTADDGDRLVASF 260 (555)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~L 260 (555)
+...+.+.... ...+.. ....+...++.++++.+||.....++++..|
T Consensus 240 l~~~f~~~~~~-------------------------------~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~l 288 (302)
T 2yv5_A 240 VRNYFREFLRY-------------------------------QCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKII 288 (302)
T ss_dssp GGGGCGGGHHH-------------------------------HHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHc-------------------------------cCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHH
Confidence 64332110000 000000 1223344578889999999865678889999
Q ss_pred ChHHHHHHHHHH
Q 008750 261 SSGWQMRMSLGK 272 (555)
Q Consensus 261 SGGqrqRv~lAr 272 (555)
||.+++++.|||
T Consensus 289 s~~~~R~~~~~~ 300 (302)
T 2yv5_A 289 KVYLEEIKELCR 300 (302)
T ss_dssp TCCCTTHHHHSS
T ss_pred HHHHHHHHHHhc
Confidence 999999999986
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-12 Score=115.82 Aligned_cols=35 Identities=31% Similarity=0.452 Sum_probs=31.1
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
+|+++ +|+.++|+|+||||||||+++|++.+.+ +|
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g 64 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AG 64 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TT
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cC
Confidence 56666 8999999999999999999999999876 35
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=4.5e-14 Score=144.06 Aligned_cols=83 Identities=13% Similarity=0.216 Sum_probs=67.5
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEE-------------------ECCCEEEEEcCCCccHHHHHHHHHcCCC--CCceEEE
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEV-------------------KKGEKVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVI 155 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i-------------------~~Ge~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~ 155 (555)
.|+++||++.| .+++++|+|.+ .+|+++||+|+||||||||+++|+|++. |++|+|.
T Consensus 37 ~i~~~~v~~~y--~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIY--LPLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHH--HHHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 48999999999 47899999988 9999999999999999999999999988 9999999
Q ss_pred E---cCCCc------eEEEEecccccCcCccHHHHH
Q 008750 156 K---AKSNM------KIAFLSQEFEVSMSRTVREEF 182 (555)
Q Consensus 156 ~---~g~~~------~ig~v~Q~~~~~~~~tv~e~~ 182 (555)
+ +|... .++++ |...++...++.+++
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~ 149 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLV 149 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHH
Confidence 8 66432 24555 555554555666654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.21 E-value=8.4e-14 Score=133.63 Aligned_cols=148 Identities=15% Similarity=0.063 Sum_probs=82.2
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~ 199 (555)
.++|++++|+|+||||||||+++|+|+++|+ | ..+++|+++...+ ..+..+++.....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g--------~~~g~v~~d~~~~-~~~~~~~~~~~~~------------ 76 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G--------LPAEVVPMDGFHL-DNRLLEPRGLLPR------------ 76 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T--------CCEEEEESGGGBC-CHHHHGGGTCGGG------------
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C--------CceEEEecCCCcC-CHHHHHHhccccc------------
Confidence 4689999999999999999999999999875 3 1356666664332 1122111100000
Q ss_pred HHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHH-HHhccCC
Q 008750 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLG-KILLQDP 278 (555)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lA-raL~~~p 278 (555)
..... ..+. ......+..+...-.+.....++.. .+|+||+|++++| ++++.++
T Consensus 77 -~~~~~-~~~~----------------------~~~~~~l~~l~~~~~i~~p~~d~~~-~~~~g~~~~v~~~~~~~i~eg 131 (208)
T 3c8u_A 77 -KGAPE-TFDF----------------------EGFQRLCHALKHQERVIYPLFDRAR-DIAIAGAAEVGPECRVAIIEG 131 (208)
T ss_dssp -TTSGG-GBCH----------------------HHHHHHHHHHHHCSCEEEEEEETTT-TEEEEEEEEECTTCCEEEEEE
T ss_pred -CCCCc-hhhH----------------------HHHHHHHHHHhcCCceecccCCccc-cCCCCCceEEcCCCcEEEECC
Confidence 00000 0000 0000111111111001111223333 5799999999998 8899999
Q ss_pred CEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHH-HHhhcce
Q 008750 279 DLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF-LDQLCTK 325 (555)
Q Consensus 279 ~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~-l~~~~dr 325 (555)
.++++|||.. ..+...--.+|+++++.+. +.+++.|
T Consensus 132 ~~~l~de~~~-----------~~l~~~~d~~i~vd~~~~~~~~R~~~R 168 (208)
T 3c8u_A 132 NYLLFDAPGW-----------RDLTAIWDVSIRLEVPMADLEARLVQR 168 (208)
T ss_dssp SSTTBCSTTG-----------GGGGGTCSEEEEECCCHHHHHHHHHHH
T ss_pred ceeccCCchh-----------HHHHHhcCEEEEEeCCHHHHHHHHHHH
Confidence 9888999841 1122222467888888776 4555555
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.5e-13 Score=134.17 Aligned_cols=134 Identities=13% Similarity=0.004 Sum_probs=78.2
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (555)
.++.++||+|++|||||||+++|++++.+. |. + ...+.+|+|+..++ ..++++|+.......
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g~----~-~~~~~iv~~D~f~~-~~~~~~~l~~~~~~~----------- 90 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-YG----G-EKSIGYASIDDFYL-THEDQLKLNEQFKNN----------- 90 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-HG----G-GSCEEEEEGGGGBC-CHHHHHHHHHHTTTC-----------
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-CC----C-CceEEEeccccccC-ChHHHHHHhcccccc-----------
Confidence 357799999999999999999999998763 20 0 11245559997664 456666653210000
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC-------ccccCCCCCCCChHHHHHHHHHHH
Q 008750 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT-------ADDGDRLVASFSSGWQMRMSLGKI 273 (555)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~-------~~~~~~~~~~LSGGqrqRv~lAra 273 (555)
..+.....+ ...+ ...+.+.+..+.-. ......+-..+||||+||+.+|++
T Consensus 91 ~l~~~~g~p------------------~a~d----~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~ 148 (290)
T 1odf_A 91 KLLQGRGLP------------------GTHD----MKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQK 148 (290)
T ss_dssp GGGSSSCST------------------TSBC----HHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEE
T ss_pred chhhhccCc------------------chhH----HHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccc
Confidence 000000000 0000 11122222222110 111234446899999999999843
Q ss_pred hccCCCEEEEcCCCCCCCHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDT 294 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~ 294 (555)
...+|+|||+||||+++|+..
T Consensus 149 ~~~~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 149 IKLPVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp EESSCSEEEEEESSTTCCCCC
T ss_pred eEcCCCEEEEeCccccCCccc
Confidence 333999999999999999853
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-13 Score=144.48 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=107.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHc------------CCCCCceEEEEcCCCc--------------eEEEEeccccc
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG------------QEEPDSGNVIKAKSNM--------------KIAFLSQEFEV 172 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G------------~~~p~~G~I~~~g~~~--------------~ig~v~Q~~~~ 172 (555)
.+.+|.++||||+||+|||||+++|+| .+.|+.|.|.+.+... ...++.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 346899999999999999999999999 5679999999876211 13466777766
Q ss_pred CcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccc
Q 008750 173 SMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADD 252 (555)
Q Consensus 173 ~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~ 252 (555)
....+..+++...+. ..+. . ++.++.-++..
T Consensus 96 ~~~~s~~e~L~~~fl-------------~~ir------------------------~---------~d~il~Vvd~~--- 126 (392)
T 1ni3_A 96 TKGASTGVGLGNAFL-------------SHVR------------------------A---------VDAIYQVVRAF--- 126 (392)
T ss_dssp CCCCCSSSSSCHHHH-------------HHHT------------------------T---------CSEEEEEEECC---
T ss_pred ccCCcHHHHHHHHHH-------------HHHH------------------------H---------HHHHHHHHhcc---
Confidence 555444332210000 0000 0 01112222221
Q ss_pred cCCCCCCCChHHHHHHHHHHHhccCC--CEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhccee
Q 008750 253 GDRLVASFSSGWQMRMSLGKILLQDP--DLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 253 ~~~~~~~LSGGqrqRv~lAraL~~~p--~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri 326 (555)
.+..+..+||+. +| +++++|||++.+|+...+..++.+. ..|.|++ +|+...+..+|++|
T Consensus 127 ~d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i 192 (392)
T 1ni3_A 127 DDAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKV 192 (392)
T ss_dssp CTTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHH
T ss_pred ccceeeeecccc------------CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHH
Confidence 134444567653 89 9999999999999999877766653 3366653 99999999999999
Q ss_pred E-EecCC-eEeeccCChHH
Q 008750 327 V-ETEMG-VSRTYEGNYSQ 343 (555)
Q Consensus 327 ~-~l~~G-~~~~~~G~y~~ 343 (555)
. +|++| +. .+.|.+++
T Consensus 193 ~~~L~~G~~~-~~~~~~~~ 210 (392)
T 1ni3_A 193 YQYLTETKQP-IRKGDWSN 210 (392)
T ss_dssp HHHHHTTCSC-GGGSCCCH
T ss_pred HHHhccCCce-eecCCCCH
Confidence 9 89999 65 44566543
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.5e-13 Score=136.94 Aligned_cols=107 Identities=16% Similarity=0.090 Sum_probs=79.9
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCCC
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLD 504 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~~ 504 (555)
.++||++.+|++++|+||||||||||++.|+|.++|++|+|.+.+.++ .++|++|++. .+++.
T Consensus 91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~~~~ 169 (302)
T 3b9q_A 91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGD-KAKAA 169 (302)
T ss_dssp CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC---CCCHH
T ss_pred cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCC-ccCHH
Confidence 457889999999999999999999999999999999999999877543 2578998752 26677
Q ss_pred CCHHHHHHhhcccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 505 KTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++.+++..+...... ..++..+|+. ...++.+.+|| |||++||
T Consensus 170 ~~v~e~l~~~~~~~~d---~~lldt~gl~-~~~~~~~~eLS---kqr~~ia 213 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD---VVLCDTSGRL-HTNYSLMEELI---ACKKAVG 213 (302)
T ss_dssp HHHHHHHHHHHHTTCS---EEEECCCCCS-SCCHHHHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHcCCc---chHHhcCCCC-cchhHHHHHHH---HHHHHHH
Confidence 7899998754211000 1246667764 34567888999 7887653
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.3e-13 Score=144.08 Aligned_cols=125 Identities=16% Similarity=0.087 Sum_probs=87.0
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee--------------
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-------------- 489 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-------------- 489 (555)
+++++++.+.|+...+|+++ +. .+|+.++|+|||||||||||++|+|.+.|.+|.|.+.+.++.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~ 220 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPR 220 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGG
T ss_pred CCCHHHcCCCHHHHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccc
Confidence 46777888777665678887 53 899999999999999999999999999999998887665442
Q ss_pred eEE---------EecCCccCCCCC----CCHHHHHHhhcc---------cCcHHHHHHHHhhCCCChhhhccccCCCChh
Q 008750 490 PNY---------FEQNQAEALDLD----KTVLETVAEAAE---------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547 (555)
Q Consensus 490 ~~y---------~~Q~~~~~l~~~----~tv~e~l~~~~~---------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGG 547 (555)
.+| +.|++...+..+ .|+.+++..+.. ......+...|..+++... ..+..||||
T Consensus 221 ~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~---~~~~~LSgg 297 (418)
T 1p9r_A 221 VDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF---LISSSLLGV 297 (418)
T ss_dssp GTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH---HHHHHEEEE
T ss_pred cCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH---HHHHHHHHH
Confidence 112 225542211122 478887765421 1112344456778888642 378899999
Q ss_pred HHhchh
Q 008750 548 EKVNQT 553 (555)
Q Consensus 548 ek~Rv~ 553 (555)
++||++
T Consensus 298 ~~QRLa 303 (418)
T 1p9r_A 298 LAQRLV 303 (418)
T ss_dssp EEEEEE
T ss_pred HHHHhh
Confidence 999954
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=3e-12 Score=118.96 Aligned_cols=95 Identities=13% Similarity=0.161 Sum_probs=57.5
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHH
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (555)
++||+|++||+++|+||||||||||++++.+-.. .+. .+...++++|++.... ...++.+++...
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~------~~~-~d~~~g~~~~~~~~~~-~~~~~~~~~~~~------- 65 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTE------VIS-SDFCRGLMSDDENDQT-VTGAAFDVLHYI------- 65 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSCGGG------EEE-HHHHHHHHCSSTTCGG-GHHHHHHHHHHH-------
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHccCCe------EEc-cHHHHHHhcCcccchh-hHHHHHHHHHHH-------
Confidence 5899999999999999999999999999764221 122 1222356777653221 111222222111
Q ss_pred HHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 522 DIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 522 ~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
... ....+.. ........+||||||||+||
T Consensus 66 -~~~-~~~~g~~--~~~~~~~~~s~g~~qrv~iA 95 (171)
T 4gp7_A 66 -VSK-RLQLGKL--TVVDATNVQESARKPLIEMA 95 (171)
T ss_dssp -HHH-HHHTTCC--EEEESCCCSHHHHHHHHHHH
T ss_pred -HHH-HHhCCCe--EEEECCCCCHHHHHHHHHHH
Confidence 111 2233432 22345567799999999886
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=9.7e-14 Score=143.14 Aligned_cols=168 Identities=20% Similarity=0.258 Sum_probs=106.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECC-------CEEEEEcCCCccHHHHHHHHHcCC----CCCceEEEEcCC-------
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKG-------EKVGLVGVNGAGKTTQLRIIAGQE----EPDSGNVIKAKS------- 159 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~G-------e~~~lvG~NGsGKSTLlk~i~G~~----~p~~G~I~~~g~------- 159 (555)
++.++++..|++..+++++++.|.+| +.++|+||||+|||||+++|+|.+ .+++|.+...+.
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 45567777788888999999999887 899999999999999999999998 677777654321
Q ss_pred ---CceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHH
Q 008750 160 ---NMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLD 236 (555)
Q Consensus 160 ---~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
...|.+++|...+.. ++.+++.... +....+. + +......
T Consensus 99 ~~~~~~v~~iDE~~~l~~--~~~e~L~~~~-----------------~~~~~~i--~----------------~~~~~~~ 141 (334)
T 1in4_A 99 SLERGDVLFIDEIHRLNK--AVEELLYSAI-----------------EDFQIDI--M----------------IGKGPSA 141 (334)
T ss_dssp HCCTTCEEEEETGGGCCH--HHHHHHHHHH-----------------HTSCCCC--------------------------
T ss_pred HccCCCEEEEcchhhcCH--HHHHHHHHHH-----------------Hhcccce--e----------------eccCccc
Confidence 235889988765532 5655543211 0000000 0 0000112
Q ss_pred HHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEE
Q 008750 237 AKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVII 312 (555)
Q Consensus 237 ~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIii 312 (555)
..+...+..+++.. ....+..||+|++||+.++ .+||+...+.+.++|++ .+ +
T Consensus 142 ~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~ 198 (334)
T 1in4_A 142 KSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----V 198 (334)
T ss_dssp -------CCCEEEE--EESCGGGSCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----C
T ss_pred ccccccCCCeEEEE--ecCCcccCCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----C
Confidence 23444556666632 4566789999999998654 66777666666655532 33 4
Q ss_pred ecCHHHHHhhcce
Q 008750 313 SHDRAFLDQLCTK 325 (555)
Q Consensus 313 SHd~~~l~~~~dr 325 (555)
+|+.+.+..+|++
T Consensus 199 ~~~~~~~~~ia~~ 211 (334)
T 1in4_A 199 EIEDAAAEMIAKR 211 (334)
T ss_dssp CBCHHHHHHHHHT
T ss_pred CcCHHHHHHHHHh
Confidence 7999888888775
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.7e-11 Score=120.85 Aligned_cols=130 Identities=19% Similarity=0.128 Sum_probs=88.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
+.++++++.|+... ++++|+ +|++++|+|+||+||||+++.|++.+.+..|+|.+.+.+. |.+ ..
T Consensus 77 ~~~~~l~~~~~~~~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~------~~~-----~~ 141 (295)
T 1ls1_A 77 TVYEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT------QRP-----AA 141 (295)
T ss_dssp HHHHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS------SCH-----HH
T ss_pred HHHHHHHHHHCCCC--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc------ccH-----hH
Confidence 45677888886543 788998 9999999999999999999999999998888887654321 100 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCC
Q 008750 178 VREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLV 257 (555)
Q Consensus 178 v~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~ 257 (555)
+ +.+. .+.+..|++......
T Consensus 142 ~-~ql~---------------------------------------------------------~~~~~~~l~~~~~~~-- 161 (295)
T 1ls1_A 142 R-EQLR---------------------------------------------------------LLGEKVGVPVLEVMD-- 161 (295)
T ss_dssp H-HHHH---------------------------------------------------------HHHHHHTCCEEECCT--
T ss_pred H-HHHH---------------------------------------------------------HhcccCCeEEEEcCC--
Confidence 0 0000 001122332111000
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCC-CCCCCHHHHHHHHHHHc
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEP-TNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEP-Ts~LD~~~~~~l~~~l~ 303 (555)
.....+.+|.+|+.+...+++++|+||| +.++|......+.....
T Consensus 162 -~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 162 -GESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp -TCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 1233456789999998899999999999 99999988877766543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-12 Score=134.99 Aligned_cols=105 Identities=16% Similarity=0.134 Sum_probs=79.3
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCCCC
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLDK 505 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~~~ 505 (555)
.+||++.+|++++|+||||||||||++.|+|+++|++|+|.+.+.++ .++|++|++ ..+++..
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~-~~~~p~~ 227 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEG-DKAKAAT 227 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSS-SSCCHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecc-cccChhh
Confidence 46788999999999999999999999999999999999999877543 257899874 2166777
Q ss_pred CHHHHHHhhcc-cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 506 TVLETVAEAAE-DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 506 tv~e~l~~~~~-~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++.+++..+.. ... ..++..+|+. ...++.+..|| |||++||
T Consensus 228 tv~e~l~~~~~~~~d----~~lldt~Gl~-~~~~~~~~eLS---kqr~~ia 270 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD----VVLCDTSGRL-HTNYSLMEELI---ACKKAVG 270 (359)
T ss_dssp HHHHHHHHHHHTTCS----EEEEECCCCS-SCCHHHHHHHH---HHHHHHH
T ss_pred hHHHHHHHHHhCCCH----HHHHHhcCCC-hhhhhHHHHHH---HHHHHHH
Confidence 89999875431 111 1245666764 34567888999 7887653
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-12 Score=131.48 Aligned_cols=55 Identities=18% Similarity=0.189 Sum_probs=39.3
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCCCc----------eEEEEeccccc
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM----------KIAFLSQEFEV 172 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~g~~~----------~ig~v~Q~~~~ 172 (555)
|++..|++++|+|+||||||||+++|+|+..|++|+|.+ +|.+. .+|||+|.|.+
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~ 231 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 231 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCC
Confidence 345579999999999999999999999999999999998 55432 37999999854
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.2e-10 Score=115.91 Aligned_cols=136 Identities=14% Similarity=0.194 Sum_probs=88.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQ 200 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~ 200 (555)
.+|++++|+|+|||||||+++.|++.+.+++| .+|.++.+++. ..+..+.+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G--------~~V~lv~~D~~---r~~a~eqL~~---------------- 155 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH--------KKIAFITTDTY---RIAAVEQLKT---------------- 155 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC--------CCEEEEECCCS---STTHHHHHHH----------------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC--------CEEEEEecCcc---cchHHHHHHH----------------
Confidence 47999999999999999999999999988777 24567777652 2233332210
Q ss_pred HHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCE
Q 008750 201 KALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDL 280 (555)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~l 280 (555)
+.+.+|++... ..+ +...+.+|+++ .+|++
T Consensus 156 -----------------------------------------~~~~~gl~~~~------~~~-~~~l~~al~~~--~~~dl 185 (296)
T 2px0_A 156 -----------------------------------------YAELLQAPLEV------CYT-KEEFQQAKELF--SEYDH 185 (296)
T ss_dssp -----------------------------------------HHTTTTCCCCB------CSS-HHHHHHHHHHG--GGSSE
T ss_pred -----------------------------------------HHHhcCCCeEe------cCC-HHHHHHHHHHh--cCCCE
Confidence 11123433111 122 34456677754 99999
Q ss_pred EEEcCCCCCCCHHHHHHHH---HHHcC--CCceEEEE--ecCHHHHHhhcceeEEecCCeEe
Q 008750 281 LLLDEPTNHLDLDTIEWLE---GYLGK--QDVPMVII--SHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 281 LlLDEPTs~LD~~~~~~l~---~~l~~--~~~tvIii--SHd~~~l~~~~dri~~l~~G~~~ 335 (555)
+|+| |+++|+.....+. ..+.. ...+++++ +|+...+.++|+++..+..+.++
T Consensus 186 vIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 186 VFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp EEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred EEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 9999 8999986554443 34431 22345555 99999999999988766666543
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.07 E-value=1.5e-13 Score=131.08 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=39.8
Q ss_pred HHH-HhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 270 LGK-ILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 270 lAr-aL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
.|+ +++.+|++++|||||+++|..+.+.+.+.|.....- +.++|. . ..+|+|++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-~~~a~~--~--~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-MESSKE--P--GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-TTGGGS--T--TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HHHhhc--c--CCceEEEECC
Confidence 456 788999999999999999998877777665432111 244562 2 4689998875
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.1e-11 Score=122.65 Aligned_cols=108 Identities=14% Similarity=0.114 Sum_probs=77.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eeEEEecCCccC-CC--CCCCHHH
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAEA-LD--LDKTVLE 509 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~---~~~~~----------~~~y~~Q~~~~~-l~--~~~tv~e 509 (555)
.+..|++++|+||||||||||+++|+ ...|++|.|.+ .|+.+ ..+|++|+|.-. +. +..|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34469999999999999999999999 99999999988 55322 247999987321 22 46678 6
Q ss_pred HHHhhcc---------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 510 TVAEAAE---------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 510 ~l~~~~~---------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++....+ ......++.+|..+++.....++++..|||.+++++.||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~ 299 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELC 299 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 6632111 111235889999999986678999999999877778775
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.6e-14 Score=140.98 Aligned_cols=48 Identities=21% Similarity=0.219 Sum_probs=41.7
Q ss_pred CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 109 GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 109 ~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
...+|++++|.+++| ++|+||||||||||+++|+|...+ |.|.++|.+
T Consensus 32 ~~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~ 79 (274)
T 2x8a_A 32 NPDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPE 79 (274)
T ss_dssp SHHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTT
T ss_pred CHHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHH
Confidence 445889999999999 999999999999999999999876 677777643
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=3.5e-12 Score=129.60 Aligned_cols=113 Identities=17% Similarity=0.146 Sum_probs=49.0
Q ss_pred EeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC-CCCCceEEEECCcee-------eeEEEecCCcc
Q 008750 428 KNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-EKPRGGEVLLGEHNV-------LPNYFEQNQAE 499 (555)
Q Consensus 428 ~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~-~~p~~G~v~~~~~~~-------~~~y~~Q~~~~ 499 (555)
+||++.|+++.++++++|+| +|+|+||+|||||++.|+|. ..|++| +.+.+.++ ..+|+.|..
T Consensus 2 ~~l~~~~~~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t~~~~~~~~~~q~~-- 72 (301)
T 2qnr_A 2 SNLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERTVQIEASTVEIEER-- 72 (301)
T ss_dssp ----------------CEEE------EEEEETTSSHHHHHHHHHC-------------------------CEEEEC----
T ss_pred CCCcceECCEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCcceEeeEEEEecCC--
Confidence 47888998888999999998 99999999999999999998 888888 55433222 235666652
Q ss_pred CCCCCCCHHHHHHhhcccCcH---HHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 500 ALDLDKTVLETVAEAAEDWRI---DDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 500 ~l~~~~tv~e~l~~~~~~~~~---~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+....++.|++......... ..+...+ .+..++.+..+|||+|||+.+|
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l------~~~~~~~~~~~sgg~rqrv~~a 125 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYI------DEQFERYLHDESGLNRRHIIDN 125 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHH------HHHHHHHHHHHTSSCCTTCCCC
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHH------HHHHHHHHHHhCHHhhhhhhhh
Confidence 233344555443321100000 0111111 1334678899999999998764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.05 E-value=7.5e-12 Score=117.30 Aligned_cols=81 Identities=19% Similarity=0.127 Sum_probs=50.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEEC----CceeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHHHHH
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLG----EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL 526 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~----~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~ 526 (555)
+++|+||||||||||+++|+|++... .|...-. ...-.++|++|+. ++.++ +
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~~~~~~~~~ig~~~~~~--------~~~~~---------------~ 58 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITT--------EGKKK---------------I 58 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEET--------TCCEE---------------E
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhhccccccceeEEEeecC--------cHHHH---------------H
Confidence 68999999999999999999987522 2321100 0011356777753 11111 1
Q ss_pred HhhCCCCh-hhhccccCCCChhHHhchhcC
Q 008750 527 LGRCNFKA-DMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 527 L~~~~~~~-~~~~~~~~~LSGGek~Rv~La 555 (555)
++.+++.. +..++++..||||||||++||
T Consensus 59 ~~~~~~~~~~~~~~~~~~lSgG~~qr~~la 88 (178)
T 1ye8_A 59 FSSKFFTSKKLVGSYGVNVQYFEELAIPIL 88 (178)
T ss_dssp EEETTCCCSSEETTEEECHHHHHHHHHHHH
T ss_pred HHhhcCCccccccccccCcCHHHHHHHHHH
Confidence 23333322 256788999999999999875
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.04 E-value=1.8e-11 Score=126.58 Aligned_cols=108 Identities=16% Similarity=0.097 Sum_probs=70.7
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEEC-Cc------eeeeEEEecCCccCCCCCCCHHHHH
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLG-EH------NVLPNYFEQNQAEALDLDKTVLETV 511 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~-p~~G~v~~~-~~------~~~~~y~~Q~~~~~l~~~~tv~e~l 511 (555)
++++++. .+|++++|+||||||||||+++|+|... |.+|.|.+. |. ....+|++|+. .+....++.++.
T Consensus 206 l~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~--~l~dtpgv~e~~ 282 (358)
T 2rcn_A 206 LKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGG--DVIDSPGVREFG 282 (358)
T ss_dssp HHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSC--EEEECHHHHTCC
T ss_pred HHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCC--EecCcccHHHhh
Confidence 3444443 3799999999999999999999999999 999998775 32 22457888874 233444555531
Q ss_pred HhhcccCcHHH----HHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 512 AEAAEDWRIDD----IKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 512 ~~~~~~~~~~~----~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.......+ +..++..+++. +..+.++..|| ||++|++||
T Consensus 283 ---l~~l~~~e~~~~~~e~l~~~gl~-~f~~~~~~~lS-G~~~r~ala 325 (358)
T 2rcn_A 283 ---LWHLEPEQITQGFVEFHDYLGHC-KYRDCKHDADP-GCAIREAVE 325 (358)
T ss_dssp ---CCCCCHHHHHHTSGGGGGGTTCS-SSTTCCSSSCT-TCHHHHHHH
T ss_pred ---hcCCCHHHHHHHHHHHHHHcCCc-hhcCCCcccCC-HHHHHHHHH
Confidence 11122222 34566777764 46788999999 999999875
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.8e-11 Score=125.06 Aligned_cols=90 Identities=14% Similarity=0.115 Sum_probs=66.5
Q ss_pred EEEeeeEE---cCC--ccce---------eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---
Q 008750 426 TIKNLEFG---YED--RLLF---------NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--- 488 (555)
Q Consensus 426 ~~~~l~~~---y~~--~~ll---------~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--- 488 (555)
++++++|+ |++ ..++ ++++|.|++|+.++|+||||||||||+++|+|+++|++|.|.+++..-
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e~~~ 216 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPELFL 216 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSCCCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccccCc
Confidence 66778877 753 2344 899999999999999999999999999999999999999999975321
Q ss_pred -----eeEEEe-cCCccCCCCCCCHHHHHHhhc
Q 008750 489 -----LPNYFE-QNQAEALDLDKTVLETVAEAA 515 (555)
Q Consensus 489 -----~~~y~~-Q~~~~~l~~~~tv~e~l~~~~ 515 (555)
.++|++ |+....+....|+.+++..+.
T Consensus 217 ~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l 249 (361)
T 2gza_A 217 PDHPNHVHLFYPSEAKEEENAPVTAATLLRSCL 249 (361)
T ss_dssp TTCSSEEEEECC----------CCHHHHHHHHT
T ss_pred cccCCEEEEeecCccccccccccCHHHHHHHHH
Confidence 256887 764322235679999998763
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-11 Score=126.99 Aligned_cols=59 Identities=20% Similarity=0.184 Sum_probs=50.9
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
.+.+++.. +..+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|.+
T Consensus 8 ~l~~l~~~--~~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~ 66 (483)
T 3euj_A 8 KFRSLTLI--NWNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTT 66 (483)
T ss_dssp EEEEEEEE--EETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTT
T ss_pred ceeEEEEe--ccccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEE
Confidence 34455432 24689999999999 9999999999999999999999999999999998754
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=9.6e-11 Score=111.99 Aligned_cols=95 Identities=8% Similarity=-0.097 Sum_probs=65.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCCCCHHHHHHhhc---ccCcHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLDKTVLETVAEAA---EDWRIDDI 523 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~~~~~ 523 (555)
..+|++|+|+||||||||||+++|+|++.| .++|++|+....-....++.++..... .......+
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE------------RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALY 70 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG------------GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC------------CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHH
Confidence 578999999999999999999999998765 356888875321124568877765322 12234456
Q ss_pred HHHHhhCCCChhhhccccCCCChhHH----hchhc
Q 008750 524 KGLLGRCNFKADMLDRKVSLLSGGEK----VNQTL 554 (555)
Q Consensus 524 ~~~L~~~~~~~~~~~~~~~~LSGGek----~Rv~L 554 (555)
...+..+++. +...+++..+|+|++ +|+++
T Consensus 71 ~~~l~~~~~~-~~~~~~~~~~s~g~~~~~~~~~~~ 104 (211)
T 3asz_A 71 LEHAQALLRG-LPVEMPVYDFRAYTRSPRRTPVRP 104 (211)
T ss_dssp HHHHHHHHTT-CCEEECCEETTTTEECSSCEEECC
T ss_pred HHHHHHHHcC-CCcCCCcccCcccCCCCCeEEeCC
Confidence 6677777664 356778999999975 45554
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.00 E-value=2.1e-09 Score=104.58 Aligned_cols=56 Identities=11% Similarity=0.106 Sum_probs=41.8
Q ss_pred cCCCEEEEcCCCCCC--CHHH-H---HHHHHHHcCCCceEEEEecCHHH--------HHhhcceeEEecC
Q 008750 276 QDPDLLLLDEPTNHL--DLDT-I---EWLEGYLGKQDVPMVIISHDRAF--------LDQLCTKIVETEM 331 (555)
Q Consensus 276 ~~p~lLlLDEPTs~L--D~~~-~---~~l~~~l~~~~~tvIiiSHd~~~--------l~~~~dri~~l~~ 331 (555)
.+|+++++|+|++.+ |+.. . ..|.+.+++.+.|||+++|.... +.+.||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 5422 2 33444556789999999998776 5678999999864
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.6e-10 Score=117.48 Aligned_cols=99 Identities=18% Similarity=0.212 Sum_probs=70.8
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG 194 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 194 (555)
.++|...+|++++|+|+|||||||+++.|++.+.+..|+|.+.+. +.. .....+.
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~---------D~~---r~~a~eq------------- 150 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA---------DTF---RAAAIEQ------------- 150 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE---------CTT---CHHHHHH-------------
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc---------ccc---cHHHHHH-------------
Confidence 346667889999999999999999999999999988777765432 211 1000010
Q ss_pred HHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHH---HHH
Q 008750 195 KLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM---SLG 271 (555)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv---~lA 271 (555)
+..+++.+|++. +..+|||+.+++ +|+
T Consensus 151 --------------------------------------------L~~~~~~~gl~~------~~~~s~~~~~~v~~~al~ 180 (306)
T 1vma_A 151 --------------------------------------------LKIWGERVGATV------ISHSEGADPAAVAFDAVA 180 (306)
T ss_dssp --------------------------------------------HHHHHHHHTCEE------ECCSTTCCHHHHHHHHHH
T ss_pred --------------------------------------------HHHHHHHcCCcE------EecCCccCHHHHHHHHHH
Confidence 011122335431 236789999999 999
Q ss_pred HHhccCCCEEEEcCCCC
Q 008750 272 KILLQDPDLLLLDEPTN 288 (555)
Q Consensus 272 raL~~~p~lLlLDEPTs 288 (555)
+++..+|+++|+|||..
T Consensus 181 ~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 181 HALARNKDVVIIDTAGR 197 (306)
T ss_dssp HHHHTTCSEEEEEECCC
T ss_pred HHHhcCCCEEEEECCCc
Confidence 99999999999999975
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.00 E-value=2e-11 Score=124.01 Aligned_cols=100 Identities=17% Similarity=0.098 Sum_probs=69.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee----------eeEEEecCCcc-------------
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV----------LPNYFEQNQAE------------- 499 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~---~~~~~----------~~~y~~Q~~~~------------- 499 (555)
++..|++++|+||||||||||+++|+|+..|++|.|.+ .|+.+ ..+|++|.+..
T Consensus 165 ~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~~ 244 (301)
T 1u0l_A 165 EYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEEL 244 (301)
T ss_dssp HHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHHH
T ss_pred HHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHHH
Confidence 45579999999999999999999999999999999988 55432 25788888631
Q ss_pred -CCCCCCCHHHHHHhhcc---cCcHHHHHHHHhhCCCChhhhccccCCCCh
Q 008750 500 -ALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSG 546 (555)
Q Consensus 500 -~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~~~~~~~~~~~~~LSG 546 (555)
.+.++.|+ +++..... ......+..+|..+++..+..++.+..||+
T Consensus 245 ~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 245 KHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp GGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 24577777 77654211 112345888999999987788899999986
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.95 E-value=3.4e-11 Score=122.20 Aligned_cols=67 Identities=13% Similarity=0.119 Sum_probs=42.3
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE---cCCCc---------eEEEEecccccCc----CccHHHH
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK---AKSNM---------KIAFLSQEFEVSM----SRTVREE 181 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~---~g~~~---------~ig~v~Q~~~~~~----~~tv~e~ 181 (555)
+++.+|++++|+|+||+|||||+++|+|+..|..|+|.+ .|... .+||++|.|.+.. .+|+ ++
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~ 246 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EE 246 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HH
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HH
Confidence 556789999999999999999999999999999999987 54321 1699999987654 5678 77
Q ss_pred HHHh
Q 008750 182 FMSA 185 (555)
Q Consensus 182 ~~~~ 185 (555)
+...
T Consensus 247 l~~~ 250 (307)
T 1t9h_A 247 LGYT 250 (307)
T ss_dssp HGGG
T ss_pred HHHH
Confidence 7433
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.7e-11 Score=132.26 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=96.5
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHc--CCCCCceEEEEcCCCceEEEEecccccCcCc--cHHHHHHHhhHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVIKAKSNMKIAFLSQEFEVSMSR--TVREEFMSAFKEEM 190 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~--tv~e~~~~~~~~~~ 190 (555)
.+++.+.++..+.|+|.+||||||+++.|.. ++.++.|++.+...+.+. .-++.....++. +|..+...+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~-~el~~~~~lPhl~~~Vvtd~~~a----- 232 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM-LELSVYEGIPHLLTEVVTDMKDA----- 232 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS-SGGGGGTTCTTBSSSCBCSHHHH-----
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch-hhhhhhccCCcccceeecCHHHH-----
Confidence 4678888999999999999999999999876 555555665543222110 001111111221 121111100
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc--ccCCCCCCCChHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD--DGDRLVASFSSGWQMRM 268 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~--~~~~~~~~LSGGqrqRv 268 (555)
...+..+ ..++++|+ ++|..+|+..- +..+....+||||+|+.
T Consensus 233 --~~~L~~~--------------------------------~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~ 277 (512)
T 2ius_A 233 --ANALRWC--------------------------------VNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPD 277 (512)
T ss_dssp --HHHHHHH--------------------------------HHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBC
T ss_pred --HHHHHHH--------------------------------HHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccc
Confidence 0000000 01223333 44555565321 00111234677876642
Q ss_pred ----------HHHHHhccCCC-EEEEcCCCCCCCHHH---HHHHHHHH---cCCCceEEEEecCHH-------HHHhhcc
Q 008750 269 ----------SLGKILLQDPD-LLLLDEPTNHLDLDT---IEWLEGYL---GKQDVPMVIISHDRA-------FLDQLCT 324 (555)
Q Consensus 269 ----------~lAraL~~~p~-lLlLDEPTs~LD~~~---~~~l~~~l---~~~~~tvIiiSHd~~-------~l~~~~d 324 (555)
.+|+++...|. ++++||+++.+|... .+.|..+. +..|.++|++||++. ...++.+
T Consensus 278 ~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~ 357 (512)
T 2ius_A 278 PYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPT 357 (512)
T ss_dssp TTC---------CCBCCCCCEEEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCE
T ss_pred cccccccchhccccccccCCcEEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCC
Confidence 46677888898 899999999988432 22233332 345999999999987 5567777
Q ss_pred eeEE
Q 008750 325 KIVE 328 (555)
Q Consensus 325 ri~~ 328 (555)
||++
T Consensus 358 RI~l 361 (512)
T 2ius_A 358 RIAF 361 (512)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8765
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=4.4e-10 Score=120.45 Aligned_cols=50 Identities=20% Similarity=0.149 Sum_probs=46.9
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
.+|+++||+|++ ++++|+||||||||||+++|+|+++|++|.|.++|.++
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~ 67 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTE 67 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEc
Confidence 579999999999 99999999999999999999999999999999987644
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.90 E-value=1.5e-11 Score=115.48 Aligned_cols=104 Identities=14% Similarity=0.221 Sum_probs=63.0
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee--------eEEEecCCccCCCCCCCHHHHHHhhcc
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQNQAEALDLDKTVLETVAEAAE 516 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~--------~~y~~Q~~~~~l~~~~tv~e~l~~~~~ 516 (555)
..|.+|++++|+||||||||||+++|+|. |..|.|.+++.++. ++|++|+.. ...++.+++.....
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~----~~~~v~~~l~~~~~ 77 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ----QNRMIMQIAADVAG 77 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCCSSCCCTTSSSHHH----HHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhhcccccCCccchhh----hhHHHHHHHHHHHH
Confidence 35789999999999999999999999997 77899988865431 234444321 23466666654321
Q ss_pred cCcH----HHHHHHHhhCCCChhhh--ccccCCCChhHHhchhcC
Q 008750 517 DWRI----DDIKGLLGRCNFKADML--DRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 ~~~~----~~~~~~L~~~~~~~~~~--~~~~~~LSGGek~Rv~La 555 (555)
.... ..+..++..+++. ... ..++..+|+|+++|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~ls~~~~~~v~~~ 121 (191)
T 1zp6_A 78 RYAKEGYFVILDGVVRPDWLP-AFTALARPLHYIVLRTTAAEAIE 121 (191)
T ss_dssp HHHHTSCEEEECSCCCTTTTH-HHHTTCSCEEEEEEECCHHHHHH
T ss_pred HHhccCCeEEEeccCcHHHHH-HHHhcCCCeEEEEecCCHHHHHH
Confidence 0000 0000111222221 111 446678999999998763
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=1.1e-11 Score=127.77 Aligned_cols=124 Identities=20% Similarity=0.260 Sum_probs=82.5
Q ss_pred EEEEeeeEEcCCccceeceEEEEecC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCceEEEECCcee-----
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERG-------EKTAIIGPNGCGKSTLLKLIMGLE----KPRGGEVLLGEHNV----- 488 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~G-------e~iaI~G~NGsGKSTLlk~L~G~~----~p~~G~v~~~~~~~----- 488 (555)
++.++++..|++..+++++++.|..| +.++|+||||||||||+++|+|.+ .+.+|.+...+.++
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~ 98 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILT 98 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHH
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHH
Confidence 34456666677777888999999877 899999999999999999999987 66666554332211
Q ss_pred -----eeEEEecCCccCCCCCCCHHHHHHhhcccC----------cHHHHHHHHhhCCCChhhhccccCCCChhHHhchh
Q 008750 489 -----LPNYFEQNQAEALDLDKTVLETVAEAAEDW----------RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQT 553 (555)
Q Consensus 489 -----~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~----------~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~ 553 (555)
.+.|++|.+ .+.. ++.+.+....... ....+...+..+++-. ...++..||+|+++|+.
T Consensus 99 ~~~~~~v~~iDE~~--~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 99 SLERGDVLFIDEIH--RLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp HCCTTCEEEEETGG--GCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHHHHTTCS
T ss_pred HccCCCEEEEcchh--hcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHHHHHhcC
Confidence 356788753 3433 6777775432211 1123444566666643 57788999999999986
Q ss_pred c
Q 008750 554 L 554 (555)
Q Consensus 554 L 554 (555)
+
T Consensus 173 l 173 (334)
T 1in4_A 173 I 173 (334)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.88 E-value=5.8e-11 Score=110.43 Aligned_cols=37 Identities=27% Similarity=0.360 Sum_probs=31.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEECCce
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLGEHN 487 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~p~---~G~v~~~~~~ 487 (555)
++++|+|+||||||||+++|+|+++|+ .|.|++++.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~ 42 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHG 42 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC----
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcc
Confidence 589999999999999999999999998 8999988654
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-09 Score=109.90 Aligned_cols=31 Identities=35% Similarity=0.555 Sum_probs=28.2
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+++|++.+| ..+|+|+||||||||+++|..+
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~l 47 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWV 47 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHT
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHH
Confidence 578888899 9999999999999999999844
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.85 E-value=1.1e-10 Score=120.09 Aligned_cols=57 Identities=19% Similarity=0.239 Sum_probs=50.2
Q ss_pred EEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 427 IKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 427 ~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
+++++| | ..++++++|.|.+|+.++|+||||||||||+++|+|+++|++|.|.+++.
T Consensus 151 ~~~v~f-y--~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~ 207 (330)
T 2pt7_A 151 YNLLDN-K--EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDT 207 (330)
T ss_dssp TTTSTT-H--HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESS
T ss_pred cCchhh-H--HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCe
Confidence 344444 4 34789999999999999999999999999999999999999999999875
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-10 Score=114.55 Aligned_cols=59 Identities=17% Similarity=0.195 Sum_probs=50.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~~~~~ 488 (555)
+++++++++. .+|++++ +++|+.++|+||||||||||+++|+|+++|+ +|.|.+.+.++
T Consensus 5 ~~~l~~l~~~----~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i 64 (261)
T 2eyu_A 5 IPEFKKLGLP----DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPI 64 (261)
T ss_dssp -CCGGGSSCC----THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSC
T ss_pred CCChHHCCCH----HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcc
Confidence 3556677653 4799998 9999999999999999999999999999998 99998877654
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.78 E-value=4.6e-10 Score=106.43 Aligned_cols=60 Identities=13% Similarity=0.111 Sum_probs=41.0
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC----------CceEEEEecccccCcCccHHH
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS----------NMKIAFLSQEFEVSMSRTVRE 180 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~----------~~~ig~v~Q~~~~~~~~tv~e 180 (555)
|+++.+|++++|+||||||||||+++|+|+++ .+.+.+. ...++|++|++..+..+++.+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 70 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEG 70 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHT
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcC
Confidence 67788999999999999999999999999974 3444331 124678888766544444433
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.78 E-value=4e-10 Score=106.52 Aligned_cols=78 Identities=21% Similarity=0.248 Sum_probs=53.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecCCccCCCCCCCHHHHHHhhcccCcHH
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~ 521 (555)
|++++|+||||||||||+++|+|+++ ++| |.+++.+. .++|++|+. . ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~~~~~~ig~~~~~~-~---g~~---------------- 58 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVRQGGRRIGFDVVTL-S---GTR---------------- 58 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEETTSSEEEEEEEET-T---SCE----------------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhHhhhceEEEEEEec-c---cce----------------
Confidence 78999999999999999999999998 888 77765322 245666652 1 100
Q ss_pred HHHHHHhhCCCChh------hhccccCCCChhHHhch
Q 008750 522 DIKGLLGRCNFKAD------MLDRKVSLLSGGEKVNQ 552 (555)
Q Consensus 522 ~~~~~L~~~~~~~~------~~~~~~~~LSGGek~Rv 552 (555)
..|+++++..+ .+.++...||+|||+++
T Consensus 59 ---~~l~~~~~~~~~~~~~~~v~~~~~~ls~~er~~~ 92 (189)
T 2i3b_A 59 ---GPLSRVGLEPPPGKRECRVGQYVVDLTSFEQLAL 92 (189)
T ss_dssp ---EEEEECCCCCCSSSCCEESSSSEECHHHHHTTTT
T ss_pred ---ehhhcccccCCccccccccceEEEcchHHHHHHH
Confidence 12334444322 23455667999999876
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.78 E-value=6.3e-10 Score=118.96 Aligned_cols=73 Identities=18% Similarity=0.220 Sum_probs=60.0
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCC
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDL 503 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~ 503 (555)
-+++||++.+|++|+|+|+||||||||+++|+|+++|++|.|.+.+.+. .++|++|+. .+++
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~--~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHT--GADS 360 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCST--TCCH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEeccc--CcCH
Confidence 4568899999999999999999999999999999999999999864322 246888874 4556
Q ss_pred CCCHHHHHHhh
Q 008750 504 DKTVLETVAEA 514 (555)
Q Consensus 504 ~~tv~e~l~~~ 514 (555)
..++.+++..+
T Consensus 361 ~~tV~e~l~~a 371 (503)
T 2yhs_A 361 ASVIFDAIQAA 371 (503)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77888888754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-10 Score=113.25 Aligned_cols=55 Identities=24% Similarity=0.279 Sum_probs=42.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~ 159 (555)
.|+++|+...|+. +|+|.+ ++++|+||||||||||+++|+|++.|++|.|.++|.
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~ 63 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNT 63 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC-----
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCE
Confidence 4788888765532 455666 899999999999999999999999999999988764
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.1e-09 Score=121.53 Aligned_cols=180 Identities=14% Similarity=0.151 Sum_probs=101.7
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCc-eEEEEcCCC-----ceEEEEecccccCc
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS-GNVIKAKSN-----MKIAFLSQEFEVSM 174 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~-G~I~~~g~~-----~~ig~v~Q~~~~~~ 174 (555)
++++.-||...+++++++.+..|+.++|+||||+|||||+++|+++.++.. |.+.+.+.. ..++++|+....
T Consensus 38 ~~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~p~g~~~-- 115 (604)
T 3k1j_A 38 KLIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTVPACQGR-- 115 (604)
T ss_dssp SHHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEEETTHHH--
T ss_pred cccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEEecchHH--
Confidence 344444777889999999999999999999999999999999999999887 777765432 357777764311
Q ss_pred CccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCc---ccHHHHHHHHhhhcCCCcc
Q 008750 175 SRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNL---DTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 175 ~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~l~~lgl~~~ 251 (555)
.+.+............ .......... ....+. .+.. ....+. ......+..++..+...
T Consensus 116 --~~~e~~~~~~~~~~~~-r~~~~~~~~~-~~~~nl-~v~~-----------~~~~~~~~v~~~~~~~~~L~G~~~~~-- 177 (604)
T 3k1j_A 116 --RIVEKYREKAKSQESV-KSSNMRLKST-VLVPKL-LVDN-----------CGRTKAPFIDATGAHAGALLGDVRHD-- 177 (604)
T ss_dssp --HHHHHHHHHHHHHTCC-------------CCCEE-EECC-----------TTCSSCCEEECTTCCHHHHHCEECCC--
T ss_pred --HHHHHHHHhhccchhh-hhhccccccc-ccccce-eecc-----------ccCCCCCEEEcCCCCHHhcCceEEec--
Confidence 0111100000000000 0000000000 000000 0000 000000 00000112222222211
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
......+|+|++|++..++....++.+|+|||... |++.....|.+.|.
T Consensus 178 --~~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le 226 (604)
T 3k1j_A 178 --PFQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQ 226 (604)
T ss_dssp --CC----CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHH
T ss_pred --hhhcCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHH
Confidence 12225699999999999999999999999999988 89999999988885
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-09 Score=118.00 Aligned_cols=50 Identities=24% Similarity=0.295 Sum_probs=46.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
.++++++|.|++|+.++|+||||||||||+++|+|+.+|++|.|.+.+..
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 46788999999999999999999999999999999999999999987653
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.76 E-value=5.7e-09 Score=111.90 Aligned_cols=178 Identities=15% Similarity=0.083 Sum_probs=102.2
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
.+.|+++..-+++|+.+.|.|++|+|||||+..|++...+..| ..+.|+.-+ ++..+.......
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g--------~~Vl~~s~E------~s~~~l~~r~~~-- 253 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTN--------ENVAIFSLE------MSAQQLVMRMLC-- 253 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS--------CCEEEEESS------SCHHHHHHHHHH--
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC--------CcEEEEECC------CCHHHHHHHHHH--
Confidence 3578888878999999999999999999999999987655433 134555433 222221110000
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
.... -+...+. ...+...+ ..++...+..++......+. ...+|.++.+ +
T Consensus 254 ------------~~~~--~~~~~l~------------~g~l~~~~-~~~~~~a~~~l~~~~l~i~d-~~~~s~~~i~--~ 303 (454)
T 2r6a_A 254 ------------AEGN--INAQNLR------------TGKLTPED-WGKLTMAMGSLSNAGIYIDD-TPSIRVSDIR--A 303 (454)
T ss_dssp ------------HHHT--CCHHHHH------------TSCCCHHH-HHHHHHHHHHHHSSCEEEEC-CTTCCHHHHH--H
T ss_pred ------------HHcC--CCHHHHh------------cCCCCHHH-HHHHHHHHHHHhcCCEEEEC-CCCCCHHHHH--H
Confidence 0000 0000000 00000000 11223333333322222222 3579999987 4
Q ss_pred HHHHhc--cCCCEEEEcCCCCCCCH--------HHHHHHHHHH----cCCCceEEEEec---------C--HH-------
Q 008750 270 LGKILL--QDPDLLLLDEPTNHLDL--------DTIEWLEGYL----GKQDVPMVIISH---------D--RA------- 317 (555)
Q Consensus 270 lAraL~--~~p~lLlLDEPTs~LD~--------~~~~~l~~~l----~~~~~tvIiiSH---------d--~~------- 317 (555)
.++.+. .+|+++++|+++...+. .....+.+.| ++.+.+||+++| | +.
T Consensus 304 ~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~S 383 (454)
T 2r6a_A 304 KCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRES 383 (454)
T ss_dssp HHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTT
T ss_pred HHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhcc
Confidence 555555 68999999999998743 2223333333 457999999999 3 22
Q ss_pred -HHHhhcceeEEecCCe
Q 008750 318 -FLDQLCTKIVETEMGV 333 (555)
Q Consensus 318 -~l~~~~dri~~l~~G~ 333 (555)
.+.+.||.|++|..+.
T Consensus 384 g~ie~~aD~vi~l~r~~ 400 (454)
T 2r6a_A 384 GSIEQDADIVAFLYRDD 400 (454)
T ss_dssp CSHHHHCSEEEEEEETT
T ss_pred chhHhhCCEEEEEeccc
Confidence 5778899999997654
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.76 E-value=7e-09 Score=107.31 Aligned_cols=69 Identities=13% Similarity=0.213 Sum_probs=47.8
Q ss_pred HHHHHHHHhccC--CCEEEEcCCCCCC----------CH----HH---HHHHHH---HHcCCCceEEEEecCHH------
Q 008750 266 MRMSLGKILLQD--PDLLLLDEPTNHL----------DL----DT---IEWLEG---YLGKQDVPMVIISHDRA------ 317 (555)
Q Consensus 266 qRv~lAraL~~~--p~lLlLDEPTs~L----------D~----~~---~~~l~~---~l~~~~~tvIiiSHd~~------ 317 (555)
+-+.++++++.+ |+++|+|||++.+ |. +. .+.+.+ .+++.+.|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345677777654 9999999999998 32 11 122222 34567999999999653
Q ss_pred ----------HHHhhcceeEEecCCeE
Q 008750 318 ----------FLDQLCTKIVETEMGVS 334 (555)
Q Consensus 318 ----------~l~~~~dri~~l~~G~~ 334 (555)
.+..+||.++.++.+..
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~ 232 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIET 232 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEE
T ss_pred CCCcccCCchHhhhccceEEEEEEeee
Confidence 26678999998887654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.8e-09 Score=100.62 Aligned_cols=96 Identities=18% Similarity=0.243 Sum_probs=60.9
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE---------ECC-------ceeeeEEEecCCccCCCCC
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL---------LGE-------HNVLPNYFEQNQAEALDLD 504 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~---------~~~-------~~~~~~y~~Q~~~~~l~~~ 504 (555)
++++|++.+| ..+|+||||||||||+++|.+++.+..|... ..+ ....+.+++|++...++++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 6789999999 9999999999999999999998777654211 111 1223456677654434331
Q ss_pred ---CCHHHHHHhh--------cccCcHHHHHHHHhhCCCChhhh
Q 008750 505 ---KTVLETVAEA--------AEDWRIDDIKGLLGRCNFKADML 537 (555)
Q Consensus 505 ---~tv~e~l~~~--------~~~~~~~~~~~~L~~~~~~~~~~ 537 (555)
.++...+... .......++..+|..++|.++..
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~~~~ 140 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISPDGY 140 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCTTCT
T ss_pred CcEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCCCCC
Confidence 2222111110 01234567888999999976544
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.75 E-value=1.6e-12 Score=130.20 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=47.4
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
+++++.+.|++..++++++|++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~ 106 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 106 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecH
Confidence 4566777777777899999999999 99999999999999999999875 67776654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.73 E-value=2.3e-11 Score=121.90 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=40.3
Q ss_pred ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 437 ~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
..+|++++|.+++| ++|+||||||||||+++|+|...+ |.+.+.+..
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~ 79 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPE 79 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTT
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHH
Confidence 34788899999999 999999999999999999998877 577776543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.4e-10 Score=116.30 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=65.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEE-------------------ecCCEEEEECCCCCcHHHHHHHHhCCCC--CCceEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTI-------------------ERGEKTAIIGPNGCGKSTLLKLIMGLEK--PRGGEVL 482 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i-------------------~~Ge~iaI~G~NGsGKSTLlk~L~G~~~--p~~G~v~ 482 (555)
.|++++|++.|. +++++++|.+ .+|++|+|+||||||||||+++|+|++. |++|.|.
T Consensus 37 ~i~~~~v~~~y~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~ 114 (308)
T 1sq5_A 37 DLSLEEVAEIYL--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVE 114 (308)
T ss_dssp TCCHHHHHHTHH--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEE
T ss_pred ccchHhHHHHHH--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEE
Confidence 478899999993 6899999988 9999999999999999999999999988 9999988
Q ss_pred E---CCcee------eeEEEecCCccCCCCCCCHHHHHHh
Q 008750 483 L---GEHNV------LPNYFEQNQAEALDLDKTVLETVAE 513 (555)
Q Consensus 483 ~---~~~~~------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (555)
+ ++... ..+|+ |+. .++...++.+++..
T Consensus 115 vi~~d~~~~~~~~~~~~~~v-q~~--~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 115 LITTDGFLHPNQVLKERGLM-KKK--GFPESYDMHRLVKF 151 (308)
T ss_dssp EEEGGGGBCCHHHHHHHTCT-TCT--TSGGGBCHHHHHHH
T ss_pred EEecCCccCcHHHHHhCCEe-ecC--CCCCCccHHHHHHH
Confidence 8 65322 12344 432 23345566666543
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2.8e-09 Score=101.84 Aligned_cols=38 Identities=18% Similarity=0.196 Sum_probs=27.1
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
+++++ .+|++||+++|+||||||||||+++|+|+++..
T Consensus 10 ~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i 47 (207)
T 1znw_A 10 PTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPNL 47 (207)
T ss_dssp -----------CCCEEEEECSTTSSHHHHHHHHHHHSTTC
T ss_pred cCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCce
Confidence 45666 799999999999999999999999999998633
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.9e-09 Score=108.05 Aligned_cols=64 Identities=17% Similarity=0.263 Sum_probs=53.6
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------eeEEEecCCccCCCCCCCHHHHHH
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------------LPNYFEQNQAEALDLDKTVLETVA 512 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------------~~~y~~Q~~~~~l~~~~tv~e~l~ 512 (555)
+|++++|+||||||||||+++|+|+++|++|+|.+.+.++ .++|++|++ .+++..++.+++.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~--~~~p~~~v~~~v~ 178 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPE--GTDSAALAYDAVQ 178 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCT--TCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCC--CCCHHHHHHHHHH
Confidence 6999999999999999999999999999999999987553 246888874 4567778888886
Q ss_pred hh
Q 008750 513 EA 514 (555)
Q Consensus 513 ~~ 514 (555)
.+
T Consensus 179 ~~ 180 (304)
T 1rj9_A 179 AM 180 (304)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.71 E-value=1.3e-09 Score=110.42 Aligned_cols=102 Identities=18% Similarity=0.097 Sum_probs=58.6
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE---CCcee-------e--eEEEecCCccC-CCC-CCCHHHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL---GEHNV-------L--PNYFEQNQAEA-LDL-DKTVLETVA 512 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~---~~~~~-------~--~~y~~Q~~~~~-l~~-~~tv~e~l~ 512 (555)
+.+|++++|+||||+|||||+++|+|...|.+|.|.+ .|+.+ . .+|+.|.|.-. +.+ ..|+ +++.
T Consensus 170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~lt~-e~l~ 248 (307)
T 1t9h_A 170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDIEE-EELG 248 (307)
T ss_dssp GGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEETTEEEESSCSCSSCCCTTCCH-HHHG
T ss_pred hcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccCCH-HHHH
Confidence 4579999999999999999999999999999999986 33322 1 47899986321 111 5688 7773
Q ss_pred hhcc-----------------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHh
Q 008750 513 EAAE-----------------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKV 550 (555)
Q Consensus 513 ~~~~-----------------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~ 550 (555)
...+ ......+..+|..+++.....+ +...|+.|.++
T Consensus 249 ~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~-~y~~lls~~~~ 302 (307)
T 1t9h_A 249 YTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYD-HYVEFMTEIKD 302 (307)
T ss_dssp GGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHH-HHHHHHHHHHT
T ss_pred HHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHH-HHHHHHHHHhh
Confidence 2211 0112357889999999754444 44455556665
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=1.5e-10 Score=119.29 Aligned_cols=62 Identities=21% Similarity=0.200 Sum_probs=54.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
|+++++++.|+...++++++|++.+|++++|+|+||||||||+++|+|++.|++|.|.+.+.
T Consensus 30 ie~~~~~~~~~~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~ 91 (337)
T 2qm8_A 30 AESRRADHRAAVRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAV 91 (337)
T ss_dssp HTCSSHHHHHHHHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HeeCCcccccChHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEE
Confidence 45667777886667899999999999999999999999999999999999999999887653
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.4e-09 Score=102.86 Aligned_cols=38 Identities=21% Similarity=0.125 Sum_probs=23.0
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH-cCCC
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA-GQEE 148 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~-G~~~ 148 (555)
+..+++||++++|++++|+||||||||||+++|+ |+++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 4688999999999999999999999999999999 9983
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-08 Score=93.51 Aligned_cols=35 Identities=14% Similarity=0.130 Sum_probs=31.0
Q ss_pred HHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 267 Rv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
.+.+|++|+.+|+++++| ||++|...++.+.+.+.
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~ 187 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTIL 187 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHH
Confidence 367899999999999999 99999999988887764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=7.7e-09 Score=107.73 Aligned_cols=32 Identities=34% Similarity=0.635 Sum_probs=29.2
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.++++++++.+| .++|+||||||||||+.+|+
T Consensus 13 ~~~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 13 GLKNVDIEFQSG-ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp TEEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred CccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367789999999 88899999999999999997
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.67 E-value=9.3e-10 Score=122.14 Aligned_cols=86 Identities=24% Similarity=0.327 Sum_probs=49.6
Q ss_pred eEEEEeeeEEcCC--ccceece----------EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEEEECCcee--
Q 008750 424 VVTIKNLEFGYED--RLLFNRA----------NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEVLLGEHNV-- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~--~~ll~~v----------sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p-~~G~v~~~~~~~-- 488 (555)
.++++++++.|++ +++++.+ +|+++. ++|+|||||||||||++|+|+..| ++|.|++.|.++
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 5788999999964 2344433 366664 999999999999999999999989 799998887653
Q ss_pred -----------eeEEEecCCccCCCCCCCHHHHHHhh
Q 008750 489 -----------LPNYFEQNQAEALDLDKTVLETVAEA 514 (555)
Q Consensus 489 -----------~~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (555)
.++|++|+. .+.+..||.+++..+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~--~l~~~~tv~e~i~~~ 121 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEI--EISDASEVEKEINKA 121 (608)
T ss_dssp EECSSSSCCEEEESCC---C--CCCCHHHHHTTHHHH
T ss_pred ecCCccccceeEEeeecccc--cCCCHHHHHHHHHHH
Confidence 246778874 466677888888654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.2e-09 Score=107.76 Aligned_cols=52 Identities=31% Similarity=0.407 Sum_probs=36.4
Q ss_pred ccEEEEeE-EEEe-CCceeeeeeeEEEEC---CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 96 SGVKLENI-SKSY-KGVTVLKDVTWEVKK---GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 96 ~~i~l~nl-s~~y-~~~~vL~~vsl~i~~---Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|+++|| +|+| ++.++|+|+||+|.+ |++++|+|++||||||++++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 46999999 9999 777899999999999 9999999999999999999999865
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=5.6e-09 Score=100.93 Aligned_cols=54 Identities=20% Similarity=0.316 Sum_probs=40.3
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC--CceEEEECCceee------eEEEecCC
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP--RGGEVLLGEHNVL------PNYFEQNQ 497 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p--~~G~v~~~~~~~~------~~y~~Q~~ 497 (555)
.-.+++|+.++|+||||||||||+++|+|..+| ..|.|.+.+.+.+ ++|++|++
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~~e~~gi~y~fq~~ 71 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNH 71 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCH
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCcccccCceEEECCH
Confidence 347899999999999999999999999999986 6788777654322 45777764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.59 E-value=1e-08 Score=99.48 Aligned_cols=36 Identities=19% Similarity=0.383 Sum_probs=22.9
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh-CCC
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM-GLE 474 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~-G~~ 474 (555)
...++||++.+|++++|+||||||||||+++|+ |++
T Consensus 16 ~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 467899999999999999999999999999999 998
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.58 E-value=2.3e-10 Score=119.37 Aligned_cols=147 Identities=16% Similarity=0.107 Sum_probs=82.5
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE-cCCC----ceEEEEecccccC-cCccHHHHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-AKSN----MKIAFLSQEFEVS-MSRTVREEFMS 184 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~-~g~~----~~ig~v~Q~~~~~-~~~tv~e~~~~ 184 (555)
.+|+++++.|++|++++|+||||||||||+++|+|. ..|.+.. .... ..+++++|.+.++ .+.+....+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~~~~~~~~~~lg~~~q~~~~l~dd~~~~~~~~r 233 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVNLPLDRLNFELGVAIDQFLVVFEDVKGTGGESR 233 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCSSCTTTHHHHHGGGTTCSCEEETTCCCSTTTTT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEeccchhHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 589999999999999999999999999999999985 4677765 2111 1355666654221 11111000000
Q ss_pred hhH--HHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCCh
Q 008750 185 AFK--EEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSS 262 (555)
Q Consensus 185 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSG 262 (555)
... .... ....+...+.+.. .+.... .+. ..+ ..-+.+...+.....+++
T Consensus 234 ~l~~~~~~~---~~~~l~~~ldG~v---------------------~v~~~t--n~~-~~l-~alf~pg~ld~~~~~l~~ 285 (377)
T 1svm_A 234 DLPSGQGIN---NLDNLRDYLDGSV---------------------KVNLEK--KHL-NKR-TQIFPPGIVTMNEYSVPK 285 (377)
T ss_dssp TCCCCSHHH---HHHTTHHHHHCSS---------------------CEEECC--SSS-CCE-EECCCCEEEEECSCCCCH
T ss_pred hccccCcch---HHHHHHHHhcCCC---------------------eEeecc--Cch-hhH-HHhhcCcccChhHHhhcH
Confidence 000 0000 0000000000000 000000 000 000 122333445566678999
Q ss_pred HHHHHHHHHHHhccCCCEEE-EcCCCC
Q 008750 263 GWQMRMSLGKILLQDPDLLL-LDEPTN 288 (555)
Q Consensus 263 GqrqRv~lAraL~~~p~lLl-LDEPTs 288 (555)
|+++|+..+.+++..|++++ ||+|+.
T Consensus 286 ~~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 286 TLQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 99999999988999999998 999998
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.58 E-value=6.1e-09 Score=98.83 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=36.8
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC-----CCCceEEEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE-----KPRGGEVLL 483 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~-----~p~~G~v~~ 483 (555)
.|+++|+++.|+ ..++++ |.+.+|.+|+|+|+||||||||++.|+|.. .|+.|.+.+
T Consensus 3 ~l~~~~~~~~~~-~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVMS-APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp --------CEEE-ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred chhhhhhhheee-cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 478999999997 356777 899999999999999999999999999998 788886543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.56 E-value=9.7e-08 Score=99.01 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=47.4
Q ss_pred CCCCCCCChHHHHHHHHHHHhccCCCEEEEc-CCCCCCCHHHHHHHHHHHcC-C-CceEEEEe--cCHH
Q 008750 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLD-EPTNHLDLDTIEWLEGYLGK-Q-DVPMVIIS--HDRA 317 (555)
Q Consensus 254 ~~~~~~LSGGqrqRv~lAraL~~~p~lLlLD-EPTs~LD~~~~~~l~~~l~~-~-~~tvIiiS--Hd~~ 317 (555)
+.++..+|+|++|++. +.+...++-++++| +|++++|......+.+.+.. . +.++|+|. ||+.
T Consensus 226 ~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 226 DRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp SSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred ccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 3556789999998876 55666777889999 99999998876555444432 2 78899998 8874
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.1e-08 Score=104.90 Aligned_cols=66 Identities=18% Similarity=0.279 Sum_probs=54.2
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------------eEEEecCCccCCCCCCCHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------------PNYFEQNQAEALDLDKTVLET 510 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------------~~y~~Q~~~~~l~~~~tv~e~ 510 (555)
..+|++++|+||||||||||++.|+|.++|++|.|.+.+.++. +.|++|.. .+++..+|.++
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~--~~~p~~~v~e~ 203 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSY--GADPAAVAYDA 203 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCT--TCCHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccc--cCCHHHHHHHH
Confidence 3689999999999999999999999999999999998765541 23777763 56777889998
Q ss_pred HHhh
Q 008750 511 VAEA 514 (555)
Q Consensus 511 l~~~ 514 (555)
+..+
T Consensus 204 l~~~ 207 (328)
T 3e70_C 204 IQHA 207 (328)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-08 Score=91.71 Aligned_cols=60 Identities=23% Similarity=0.192 Sum_probs=46.6
Q ss_pred eee--eeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE---------EcC-------CCceEEEEecccc
Q 008750 111 TVL--KDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI---------KAK-------SNMKIAFLSQEFE 171 (555)
Q Consensus 111 ~vL--~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~---------~~g-------~~~~ig~v~Q~~~ 171 (555)
..+ ++++|.+.+| +++|+|+||||||||+++|++++.+..|... ..+ ....|.+++|++.
T Consensus 13 ~~~~~~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 13 KSYGNKKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp GGGCSSCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred EeecCccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 356 7889999999 9999999999999999999998887665421 121 2236888888754
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.2e-09 Score=109.80 Aligned_cols=49 Identities=22% Similarity=0.384 Sum_probs=40.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCC
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~--iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+++++ ++.|++.+ ++++||+|++|++ ++|+||||||||||+++|+|..
T Consensus 16 ~l~~~~-~~~y~~~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 16 TVPLAG-HVGFDSLP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp -CCCCC-CC-CC--C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEee-EEEECCee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence 456677 88898777 9999999999999 9999999999999999999984
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.53 E-value=1.5e-09 Score=105.37 Aligned_cols=56 Identities=20% Similarity=0.223 Sum_probs=42.2
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
.|+++|+...|+. +|++.+ ++++|+||||||||||+++|+|++.|++|.|.+++.+
T Consensus 9 ~l~l~~~~~~~~~-------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~ 64 (227)
T 1qhl_A 9 SLTLINWNGFFAR-------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTT 64 (227)
T ss_dssp EEEEEEETTEEEE-------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------
T ss_pred EEEEEeeecccCC-------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEE
Confidence 4788888755431 566666 8999999999999999999999999999988776543
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=9.4e-09 Score=116.35 Aligned_cols=81 Identities=19% Similarity=0.184 Sum_probs=53.1
Q ss_pred eEEEEeeeEEc---CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC-CCceEEEECCceeeeEEEecCCcc
Q 008750 424 VVTIKNLEFGY---EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK-PRGGEVLLGEHNVLPNYFEQNQAE 499 (555)
Q Consensus 424 ~l~~~~l~~~y---~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~-p~~G~v~~~~~~~~~~y~~Q~~~~ 499 (555)
.+.+++..+.. ++..++++++|+ |++++|+||||||||||||+|+|+.. |+.|.+.. .....++|++|-
T Consensus 550 ~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-a~~~~i~~v~~i--- 622 (765)
T 1ewq_A 550 RLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-AEEAHLPLFDGI--- 622 (765)
T ss_dssp SEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-SSEEEECCCSEE---
T ss_pred cEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-hhccceeeHHHh---
Confidence 46777775433 345789999998 99999999999999999999999864 67776432 223345566652
Q ss_pred CCCCCCCHHHHHHh
Q 008750 500 ALDLDKTVLETVAE 513 (555)
Q Consensus 500 ~l~~~~tv~e~l~~ 513 (555)
....++.+++..
T Consensus 623 --~~~~~~~d~l~~ 634 (765)
T 1ewq_A 623 --YTRIGASDDLAG 634 (765)
T ss_dssp --EEECCC------
T ss_pred --hccCCHHHHHHh
Confidence 223455666543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.48 E-value=2.4e-10 Score=114.34 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=47.1
Q ss_pred EEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 426 ~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
+++++.+.|....++++++|.+.+| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 51 ~l~~l~~~~~~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~ 107 (278)
T 1iy2_A 51 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 107 (278)
T ss_dssp HHHHHHHHHHCHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHH
Confidence 4566666676667899999999999 99999999999999999999875 667766543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.48 E-value=9.8e-09 Score=101.19 Aligned_cols=52 Identities=17% Similarity=0.355 Sum_probs=36.0
Q ss_pred ceEEEEee-eEEc-CCccceeceEEEEec---CCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 423 SVVTIKNL-EFGY-EDRLLFNRANLTIER---GEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 423 ~~l~~~~l-~~~y-~~~~ll~~vsl~i~~---Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
++++++|+ ++.| ++..+|+++||+|.+ |++|+|+|++||||||+.++|++.+
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999 9999 677899999999999 9999999999999999999998854
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.46 E-value=7.2e-08 Score=91.12 Aligned_cols=32 Identities=19% Similarity=0.399 Sum_probs=26.7
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
||++.+|++++|+||||||||||+++|+|+++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 57889999999999999999999999999864
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-08 Score=96.09 Aligned_cols=42 Identities=24% Similarity=0.276 Sum_probs=31.7
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN 160 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~ 160 (555)
+-.++.++|++++|+|+||||||||+++|++.+ |.+.+++..
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~ 62 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADA 62 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGG
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccc
Confidence 334667899999999999999999999999987 888887643
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.45 E-value=1.3e-07 Score=97.69 Aligned_cols=36 Identities=22% Similarity=0.273 Sum_probs=31.5
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
=|++|+++.|+||+|||||||+..+++...+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999999877665654
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=2.7e-07 Score=86.87 Aligned_cols=34 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc
Q 008750 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG 303 (555)
Q Consensus 268 v~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~ 303 (555)
...|++|+.+|+++++| ||++|....+.+.+.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~ 163 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL 163 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence 34589999999999999 99999998888877664
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.2e-07 Score=100.23 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=41.3
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
..|.++++++.|+++.++++++|+| +|+|+||||||||+++|+|...|..|
T Consensus 10 ~~l~~~~l~~~y~~~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~ 60 (418)
T 2qag_C 10 GYVGFANLPNQVYRKSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE 60 (418)
T ss_dssp -----CCCCCCTTTTTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC
T ss_pred CcEEEEecceeECCEEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC
Confidence 3588999999999888999999998 99999999999999999999875444
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-07 Score=106.37 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=55.1
Q ss_pred CCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCC-CCCHHHHHHHHHHH-c--CCCceEEE-EecCHHHHHhhccee
Q 008750 255 RLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTIEWLEGYL-G--KQDVPMVI-ISHDRAFLDQLCTKI 326 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs-~LD~~~~~~l~~~l-~--~~~~tvIi-iSHd~~~l~~~~dri 326 (555)
..+..+|+|+.+|..+++.++.++++||+|||.. +||......+...+ . ....+|++ +||+.+.+..+++..
T Consensus 186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~~ 262 (773)
T 2xau_A 186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFNDA 262 (773)
T ss_dssp CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTSC
T ss_pred CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcCC
Confidence 4456789999999999999999999999999997 89977654444433 2 22456666 499988887777653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.40 E-value=3e-09 Score=107.55 Aligned_cols=44 Identities=23% Similarity=0.197 Sum_probs=37.6
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
++++|+ +|++++|+|+|||||||++..|++.+.+..|.|.+.+.
T Consensus 91 ~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 91 RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 345666 89999999999999999999999999988888776543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.2e-07 Score=94.71 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=61.3
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc---eeeeEEEecCCccCCCCCCCHHHHHHhhcccCcHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH---NVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDI 523 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~---~~~~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~ 523 (555)
|.+|+.++|+||||||||||++.|++... .|.+.++.. ...+.|+..... . ..+...+............
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~~g~~~~~~~~v~~~~~e~~--~---~~~~~r~~~~g~~~~~~~~ 99 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDLLEVGELPTGPVIYLPAEDP--P---TAIHHRLHALGAHLSAEER 99 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCTTCCCCCCCCCEEEEESSSC--H---HHHHHHHHHHHTTSCHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCcCCCccCCCccEEEEECCCC--H---HHHHHHHHHHHhhcChhhh
Confidence 78999999999999999999999998554 344432110 113456654321 1 0111222222222334445
Q ss_pred HHHHhhCCCChhhhccccCCCChhHHhchh
Q 008750 524 KGLLGRCNFKADMLDRKVSLLSGGEKVNQT 553 (555)
Q Consensus 524 ~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~ 553 (555)
..++..+.+.. ..++++..||+|+++++.
T Consensus 100 ~~~~~~l~l~~-~~~~~~~~ls~g~~~~i~ 128 (279)
T 1nlf_A 100 QAVADGLLIQP-LIGSLPNIMAPEWFDGLK 128 (279)
T ss_dssp HHHHHHEEECC-CTTSCCCTTSHHHHHHHH
T ss_pred hhccCceEEee-cCCCCcccCCHHHHHHHH
Confidence 55677777643 457789999999988763
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-08 Score=97.15 Aligned_cols=57 Identities=21% Similarity=0.193 Sum_probs=44.6
Q ss_pred EeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE--EEcC
Q 008750 101 ENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV--IKAK 158 (555)
Q Consensus 101 ~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I--~~~g 158 (555)
+|++++++...+.+.+++..++|++++|+|+||||||||+++|++.+. ..|.+ .+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~ 61 (200)
T 3uie_A 3 TNIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDG 61 (200)
T ss_dssp -------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEH
T ss_pred CCCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecC
Confidence 577888888888888999999999999999999999999999999987 67877 6654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.2e-08 Score=115.12 Aligned_cols=49 Identities=29% Similarity=0.355 Sum_probs=41.2
Q ss_pred eEEEEeeeEEc-------CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 424 VVTIKNLEFGY-------EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 424 ~l~~~~l~~~y-------~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
.+.+++..+.. ++..++++++|++.+|++++|+||||||||||||+|++
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 56777765533 24578999999999999999999999999999999874
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.3e-07 Score=99.83 Aligned_cols=45 Identities=24% Similarity=0.276 Sum_probs=38.3
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEEC
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLG 484 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~-----------~~p~~G~v~~~ 484 (555)
-++++|+++.|+.|+|+|+|||||||||++|+|. +.|..|.|.++
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~ 202 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS 202 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCccccCcccceecceeeEEEec
Confidence 4779999999999999999999999999999998 34555655554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.1e-07 Score=90.20 Aligned_cols=70 Identities=16% Similarity=0.116 Sum_probs=46.4
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC-CCceEEEEecCHHHH--HhhcceeEEecC
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK-QDVPMVIISHDRAFL--DQLCTKIVETEM 331 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~-~~~tvIiiSHd~~~l--~~~~dri~~l~~ 331 (555)
.+.|+.+|..+++.+..+|+.+.++ ++.++|.....+.+.+.. .+.++|+.+|.+... ...||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTCCSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhcCCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999988888754433 345667777777776653 356788888987665 567999988853
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-07 Score=89.66 Aligned_cols=41 Identities=22% Similarity=0.349 Sum_probs=33.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCC-------CceEEEECCc
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKP-------RGGEVLLGEH 486 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p-------~~G~v~~~~~ 486 (555)
-|++|++++|+||||||||||+++|+|...+ ..|.+++++.
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~ 68 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTE 68 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESS
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECC
Confidence 6899999999999999999999999996555 3345666543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.36 E-value=2.5e-06 Score=88.33 Aligned_cols=48 Identities=23% Similarity=0.262 Sum_probs=37.9
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcC------CCceEEEEecCHHHHHhhcc
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK------QDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~------~~~tvIiiSHd~~~l~~~~d 324 (555)
.+|.+|++||+... |......|..++.+ .+.++|++||+..+...+.+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l~~ 177 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDP 177 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTSCH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHhCH
Confidence 45889999999876 99888888888753 47889999999876655443
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.1e-07 Score=90.58 Aligned_cols=31 Identities=26% Similarity=0.289 Sum_probs=28.7
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
..+|++|+|+||||||||||+++|+|++.|.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~ 49 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ 49 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 4689999999999999999999999999864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.33 E-value=7.4e-08 Score=97.04 Aligned_cols=97 Identities=14% Similarity=-0.000 Sum_probs=60.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEE-ecCCccCCCCCCCHHHHHHhhc-----------c
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF-EQNQAEALDLDKTVLETVAEAA-----------E 516 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~-~Q~~~~~l~~~~tv~e~l~~~~-----------~ 516 (555)
++.+|+|+|++|||||||++.|.+.+.+. | .......+ .|+.. + ...+..+++.... +
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~~~~~~iv~~D~f--~-~~~~~~~~l~~~~~~~~l~~~~g~p 99 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GGEKSIGYASIDDF--Y-LTHEDQLKLNEQFKNNKLLQGRGLP 99 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GGGSCEEEEEGGGG--B-CCHHHHHHHHHHTTTCGGGSSSCST
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CCCceEEEeccccc--c-CChHHHHHHhccccccchhhhccCc
Confidence 57799999999999999999999988763 2 01222334 88742 2 2446777775431 1
Q ss_pred -cCcHHHHHHHHhhCCCCh-----h--hhccccCCCChhHHhchhcC
Q 008750 517 -DWRIDDIKGLLGRCNFKA-----D--MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 517 -~~~~~~~~~~L~~~~~~~-----~--~~~~~~~~LSGGek~Rv~La 555 (555)
......+...|..+.-.. . .+......+||||++|+.+|
T Consensus 100 ~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a 146 (290)
T 1odf_A 100 GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTG 146 (290)
T ss_dssp TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSC
T ss_pred chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccc
Confidence 122344555555553220 1 12344578999999998753
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-07 Score=99.68 Aligned_cols=59 Identities=15% Similarity=0.182 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHhccCCCEEEEcCCC----------CCCCHHHHHHHHHHHc-------CCCceEEEEecCHHHHH
Q 008750 262 SGWQMRMSLGKILLQDPDLLLLDEPT----------NHLDLDTIEWLEGYLG-------KQDVPMVIISHDRAFLD 320 (555)
Q Consensus 262 GGqrqRv~lAraL~~~p~lLlLDEPT----------s~LD~~~~~~l~~~l~-------~~~~tvIiiSHd~~~l~ 320 (555)
|++++|..+++|....|.||++||+. ++.|....+.+.++|. ..+..||.+||+++.++
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 67889999999999999999999994 3566554444444432 24678999999987654
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-07 Score=86.47 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=30.1
Q ss_pred EEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 118 WEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 118 l~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
++|.+|++++|+|+||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.28 E-value=6e-08 Score=100.89 Aligned_cols=44 Identities=18% Similarity=0.308 Sum_probs=39.9
Q ss_pred eeceEEEEec--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----eEEEE
Q 008750 440 FNRANLTIER--GEKTAIIGPNGCGKSTLLKLIMGLEKPRG----GEVLL 483 (555)
Q Consensus 440 l~~vsl~i~~--Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~----G~v~~ 483 (555)
...|+++|.+ |++++|+||||||||||+++|+|++.|++ |.+.+
T Consensus 158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i 207 (365)
T 1lw7_A 158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFV 207 (365)
T ss_dssp GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHH
T ss_pred hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHH
Confidence 5568999999 99999999999999999999999999998 66554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=7.9e-08 Score=96.76 Aligned_cols=45 Identities=24% Similarity=0.178 Sum_probs=40.9
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL 482 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G-~v~ 482 (555)
..|+++++.|++|+.++|+||||||||||++.|+|...|.+| .|.
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~ 68 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVG 68 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEE
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEE
Confidence 468999999999999999999999999999999999998877 453
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.5e-07 Score=106.71 Aligned_cols=54 Identities=26% Similarity=0.347 Sum_probs=43.9
Q ss_pred CceEEEEe-----eeEEc-CCccceeceEEEEec-------CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 422 RSVVTIKN-----LEFGY-EDRLLFNRANLTIER-------GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 422 ~~~l~~~~-----l~~~y-~~~~ll~~vsl~i~~-------Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
...|++++ +++.| ++..++++++|++.+ |++++|+||||||||||||+| |+..+
T Consensus 748 ~~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~ 814 (1022)
T 2o8b_B 748 PPFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV 814 (1022)
T ss_dssp CCCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred CceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH
Confidence 45799999 99888 667899999999987 999999999999999999999 88664
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-06 Score=91.55 Aligned_cols=39 Identities=21% Similarity=0.420 Sum_probs=29.8
Q ss_pred ECCCE-EEEEcCCCccHHHHHHHHHcCCC-----------CCceEEEEcCC
Q 008750 121 KKGEK-VGLVGVNGAGKTTQLRIIAGQEE-----------PDSGNVIKAKS 159 (555)
Q Consensus 121 ~~Ge~-~~lvG~NGsGKSTLlk~i~G~~~-----------p~~G~I~~~g~ 159 (555)
+.|-. ++|+|++|||||||++.|+|... |+.|.|.++|.
T Consensus 176 ~~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~ 226 (364)
T 2qtf_A 176 RNNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNR 226 (364)
T ss_dssp ---CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTE
T ss_pred hcCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCE
Confidence 34555 99999999999999999999875 56788888764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.26 E-value=1.7e-07 Score=88.79 Aligned_cols=29 Identities=34% Similarity=0.549 Sum_probs=23.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+.+|++++|+||||||||||+++|+|+++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35799999999999999999999999875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=8.5e-08 Score=100.06 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=44.6
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCcee------eeEEEec
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNV------LPNYFEQ 495 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~~~~~------~~~y~~Q 495 (555)
+|++++ +.+|+.++|+||||||||||+++|+|+++|+ +|.|.+.+.++ ..+|++|
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~~~~~~~v~Q 188 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQ 188 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCCCCSSSEEEE
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhhccCceEEEe
Confidence 566654 7899999999999999999999999999997 89986544333 2357888
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.1e-07 Score=93.64 Aligned_cols=43 Identities=26% Similarity=0.247 Sum_probs=34.5
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH---cCCCCCceEEE
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA---GQEEPDSGNVI 155 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~---G~~~p~~G~I~ 155 (555)
..++++.+ .+|++++|+|+||||||||+++|+ |+..|++|.|.
T Consensus 17 ~~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 17 RLERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp ------CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred hhhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 34455544 789999999999999999999999 99999999987
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=5.4e-06 Score=85.83 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=33.2
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHc--CCCCCceEEE
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG--QEEPDSGNVI 155 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G--~~~p~~G~I~ 155 (555)
..+|++++++++ .++|||++|||||||++.|+| ++++.+|.+.
T Consensus 24 ~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 24 SSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp SCCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred ccccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 358999999997 999999999999999999999 5566677654
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-08 Score=92.88 Aligned_cols=59 Identities=25% Similarity=0.312 Sum_probs=42.3
Q ss_pred eeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE--EECCcee
Q 008750 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV--LLGEHNV 488 (555)
Q Consensus 429 ~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v--~~~~~~~ 488 (555)
|++..++.....+.+++...+|+.|+|+||||||||||+++|++.+. ..|.+ .+++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 4 NIKWHECSVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp ------CCCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCcccccccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 44554444445666777788999999999999999999999999887 56766 6665433
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.3e-05 Score=97.10 Aligned_cols=30 Identities=27% Similarity=0.475 Sum_probs=26.8
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
|.+|+.|.|.||+|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999998775443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.20 E-value=6.9e-07 Score=84.33 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=29.9
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
++|.+|++|+|+||||||||||+++|++.+.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 36789999999999999999999999999977665
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.5e-08 Score=102.06 Aligned_cols=43 Identities=26% Similarity=0.331 Sum_probs=38.0
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
.+++++++.+++|+.++|+||||||||||+++|+|. ..|.+..
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~ 199 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALN 199 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEEC
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEE
Confidence 578999999999999999999999999999999985 3566654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.4e-06 Score=89.39 Aligned_cols=129 Identities=14% Similarity=0.110 Sum_probs=80.4
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (555)
+-|+.+.--+.+|+.+.|.|++|+|||||+.-|+....... ..+.|++= .++..+.....
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g---------~~Vl~fSl------Ems~~ql~~Rl----- 93 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD---------RGVAVFSL------EMSAEQLALRA----- 93 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT---------CEEEEEES------SSCHHHHHHHH-----
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC---------CeEEEEeC------CCCHHHHHHHH-----
Confidence 34555555688999999999999999999998876543211 24555552 23333221100
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~l 270 (555)
..... +++..... -..||+++.+|+..
T Consensus 94 -------------------------------------------------ls~~~--~v~~~~l~--~g~Ls~~e~~~l~~ 120 (338)
T 4a1f_A 94 -------------------------------------------------LSDLT--SINMHDLE--SGRLDDDQWENLAK 120 (338)
T ss_dssp -------------------------------------------------HHHHH--CCCHHHHH--HTCCCHHHHHHHHH
T ss_pred -------------------------------------------------HHHhh--CCCHHHHh--cCCCCHHHHHHHHH
Confidence 00000 11100000 13699999999999
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHHHHHH-HHcCC-CceEEEEec
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEG-YLGKQ-DVPMVIISH 314 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~~l~~-~l~~~-~~tvIiiSH 314 (555)
|...+.+++++|.|+|... +..+....+ +.+++ +..+|||-|
T Consensus 121 a~~~l~~~~l~I~d~~~~s--i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 121 CFDHLSQKKLFFYDKSYVR--IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp HHHHHHHSCEEEECCTTCC--HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred HHHHHhcCCeEEeCCCCCc--HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 9999999999999998654 444433333 33455 778888764
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.13 E-value=9.8e-07 Score=83.36 Aligned_cols=38 Identities=24% Similarity=0.199 Sum_probs=24.9
Q ss_pred ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 110 VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 110 ~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..+++||||++.+|.+++|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 46899999999999999999999999999999999765
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=3.5e-07 Score=94.69 Aligned_cols=67 Identities=19% Similarity=0.158 Sum_probs=46.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCC-ceEEEECCceee------eEEEecCCccCCCCCCCHHHHHHhh
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPR-GGEVLLGEHNVL------PNYFEQNQAEALDLDKTVLETVAEA 514 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~-~G~v~~~~~~~~------~~y~~Q~~~~~l~~~~tv~e~l~~~ 514 (555)
.+.+|+.++|+||||||||||+++|+|.++|+ .|.|...+.++. .+++.|.+. .....+..+.++.+
T Consensus 119 ~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~--~~~~~~~~~~La~a 192 (356)
T 3jvv_A 119 SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREV--HRDTLGFSEALRSA 192 (356)
T ss_dssp HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEB--TTTBSCHHHHHHHH
T ss_pred HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeee--ccccCCHHHHHHHH
Confidence 67889999999999999999999999999987 566654433332 235666432 11234666666543
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=5.6e-06 Score=88.57 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHH
Q 008750 263 GWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFL 319 (555)
Q Consensus 263 GqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l 319 (555)
.+.+....+...+.+++++|+......-......++.++|++.+..+|+|.+..+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccch
Confidence 477777788888889998888766554334455678888888899999998876654
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=1.9e-06 Score=99.39 Aligned_cols=58 Identities=22% Similarity=0.273 Sum_probs=47.0
Q ss_pred CceEEEEeeeEEc-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHH--------hCCCCCCce
Q 008750 422 RSVVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLI--------MGLEKPRGG 479 (555)
Q Consensus 422 ~~~l~~~~l~~~y-----~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L--------~G~~~p~~G 479 (555)
...+.+++..+.+ ++..++++++|++.+|++++|+||||||||||||+| .|..-|..+
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 3457777766543 234689999999999999999999999999999999 787777654
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=9.7e-07 Score=82.11 Aligned_cols=35 Identities=11% Similarity=0.161 Sum_probs=29.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC-CceEEEE
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP-DSGNVIK 156 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p-~~G~I~~ 156 (555)
+|++++|+||||||||||+++|++.+++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6899999999999999999999999864 4555543
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.08 E-value=1e-06 Score=83.26 Aligned_cols=42 Identities=19% Similarity=0.269 Sum_probs=31.7
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
..+...+|++|+|+|+||||||||+++|++.+ |.+.+++..+
T Consensus 22 ~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~ 63 (200)
T 4eun_A 22 SMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAF 63 (200)
T ss_dssp ------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGG
T ss_pred hhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEccccc
Confidence 34566789999999999999999999999976 7777776544
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.08 E-value=1.7e-06 Score=89.18 Aligned_cols=45 Identities=22% Similarity=0.314 Sum_probs=31.2
Q ss_pred CCCEEEEcCCCCCC---CHHHHHHHHHHH---cCCCceEEEEecCHHHHHh
Q 008750 277 DPDLLLLDEPTNHL---DLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 277 ~p~lLlLDEPTs~L---D~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~ 321 (555)
.|.+|++||+.... |......+.+.+ ...+.++|++||+..+...
T Consensus 128 ~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 128 SQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp SCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCGGGGGG
T ss_pred CeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCCChHhh
Confidence 38899999998876 344555666666 3457889999998865433
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.08 E-value=8.2e-07 Score=86.83 Aligned_cols=63 Identities=22% Similarity=0.382 Sum_probs=46.5
Q ss_pred cCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEEECCcee------eeEEEecCCccCCCCCCCHHHHHHh
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVLLGEHNV------LPNYFEQNQAEALDLDKTVLETVAE 513 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~---G~~~p~~G~v~~~~~~~------~~~y~~Q~~~~~l~~~~tv~e~l~~ 513 (555)
++++|+|+||||||||||+++|+ |+..|+.|.+.+.+.+. .+.++.|+. .+.+..++.+++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~v~~~l~~ 97 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKASTEVGEMAKQYIEKS--LLVPDHVITRLMMS 97 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTCHHHHHHHHHHHTT--CCCCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCChHHHHHHHHHHcC--CCCCHHHHHHHHHH
Confidence 47999999999999999999999 99999999876653211 122345542 35566678887764
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.07 E-value=6.4e-07 Score=91.42 Aligned_cols=46 Identities=30% Similarity=0.294 Sum_probs=41.8
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
+++++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999999999999999999999999998754
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.06 E-value=5.7e-07 Score=88.55 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=33.3
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHh---CCCCCCceEEE
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIM---GLEKPRGGEVL 482 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~---G~~~p~~G~v~ 482 (555)
.+|++|+|+|||||||||++++|+ |+..+++|.+.
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~ 62 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIY 62 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCcee
Confidence 689999999999999999999999 99999999887
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=9.6e-08 Score=93.81 Aligned_cols=57 Identities=28% Similarity=0.374 Sum_probs=47.8
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
.+++++.+.|++..+++++++++++| ++|+||||||||||+++|++... .|.|.+++
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~ 82 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 82 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeH
Confidence 45667777776677899999999999 99999999999999999999875 66666653
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.05 E-value=6.1e-06 Score=84.95 Aligned_cols=28 Identities=14% Similarity=0.073 Sum_probs=25.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
-|++|+++.|.|++|||||||+..|+..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999998875
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=2.5e-07 Score=103.68 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=35.6
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHH
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAF 318 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~ 318 (555)
..+-..+.-++++| |+++++..+..++.. +...+.++|++.|.++.
T Consensus 93 ~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~-~~~~~ip~ilv~NKiD~ 138 (665)
T 2dy1_A 93 GALEAADAALVAVS-AEAGVQVGTERAWTV-AERLGLPRMVVVTKLDK 138 (665)
T ss_dssp HHHHHCSEEEEEEE-TTTCSCHHHHHHHHH-HHHTTCCEEEEEECGGG
T ss_pred HHHhhcCcEEEEEc-CCcccchhHHHHHHH-HHHccCCEEEEecCCch
Confidence 33345788899999 999999998866554 44468899999998875
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-06 Score=97.11 Aligned_cols=50 Identities=24% Similarity=0.284 Sum_probs=40.8
Q ss_pred eEEEEeeeEEc-----CCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 424 VVTIKNLEFGY-----EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 424 ~l~~~~l~~~y-----~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+.+++..... ++..++++++|+ .+|++++|+||||||||||||+|+|..
T Consensus 577 ~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 577 GIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 46666654322 345689999999 999999999999999999999999863
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-06 Score=82.15 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
|++++|+||||||||||+++|++ |..|.+.+++..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~ 36 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDI 36 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccc
Confidence 68999999999999999999987 667888877543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.1e-05 Score=82.36 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=25.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
-|++|+++.|.|++|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4789999999999999999999988865
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.02 E-value=5.7e-07 Score=86.19 Aligned_cols=46 Identities=22% Similarity=0.279 Sum_probs=38.4
Q ss_pred cceeceEE-EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 438 LLFNRANL-TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 438 ~ll~~vsl-~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
+.|+++.+ .|++|+.++|+||||||||||++.|++...+..|.|.+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~ 56 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIY 56 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEE
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35666666 78999999999999999999999999887776665544
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-06 Score=80.84 Aligned_cols=38 Identities=21% Similarity=0.099 Sum_probs=24.6
Q ss_pred ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 437 RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 437 ~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
...++++||++.+|.+|+|+|++||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 35799999999999999999999999999999998754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.4e-07 Score=96.21 Aligned_cols=62 Identities=19% Similarity=0.293 Sum_probs=47.1
Q ss_pred eEEEEeCCceeeeeeeEEEECCC------EEEEEcCCCccHHHHHHHHHcCCC--CCceEEEEcCCCceEEEEeccccc
Q 008750 102 NISKSYKGVTVLKDVTWEVKKGE------KVGLVGVNGAGKTTQLRIIAGQEE--PDSGNVIKAKSNMKIAFLSQEFEV 172 (555)
Q Consensus 102 nls~~y~~~~vL~~vsl~i~~Ge------~~~lvG~NGsGKSTLlk~i~G~~~--p~~G~I~~~g~~~~ig~v~Q~~~~ 172 (555)
.+++.|++...|++++..+..+. ++||+|+||||||||+++|++++. |+.|. +++++++...
T Consensus 65 ll~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~---------v~~i~~D~f~ 134 (321)
T 3tqc_A 65 LLSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---------VEVITTDGFL 134 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC---------EEEEEGGGGB
T ss_pred HHHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe---------EEEEeecccc
Confidence 34455666677888888887776 999999999999999999999987 34443 4566766543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.99 E-value=1.9e-06 Score=80.08 Aligned_cols=34 Identities=9% Similarity=0.239 Sum_probs=28.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC-CceEE
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP-RGGEV 481 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p-~~G~v 481 (555)
.+|+.++|+||||||||||+++|++.+++ ..|.|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i 37 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPI 37 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEee
Confidence 36899999999999999999999998764 34444
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=2.4e-07 Score=90.96 Aligned_cols=58 Identities=19% Similarity=0.315 Sum_probs=47.1
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
.+++++.+.|....+++++++.+++| ++|+||||||||||+++|++... .|.+.+.+.
T Consensus 26 ~~l~~l~~~~~~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~ 83 (254)
T 1ixz_A 26 EELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 83 (254)
T ss_dssp HHHHHHHHHHHCHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHH
T ss_pred HHHHHHHHHHHCHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHH
Confidence 34566666666666899999999999 99999999999999999999875 567766543
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2.5e-06 Score=82.54 Aligned_cols=39 Identities=23% Similarity=0.133 Sum_probs=32.9
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCC
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKS 159 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~ 159 (555)
+.+.++|++++|+|+||||||||+++|+|. .|+|.+.+.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 334578999999999999999999999998 677776654
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.93 E-value=8.9e-06 Score=76.00 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=32.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC-----------CceEEEECCceee
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKP-----------RGGEVLLGEHNVL 489 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p-----------~~G~v~~~~~~~~ 489 (555)
+|+|+|+||||||||++.|+|...+ ..|.|.+++..+.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 7899999999999999999998765 5788888876554
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=7.3e-07 Score=82.65 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=32.2
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
+|.+.+|+.++|+||||||||||+++|++.+.|..|
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 456778999999999999999999999999877666
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.90 E-value=1.9e-06 Score=81.59 Aligned_cols=38 Identities=18% Similarity=0.152 Sum_probs=33.8
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
..+|++++|+|+||||||||+++|++.+++..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999998888877654
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.88 E-value=5.3e-06 Score=88.04 Aligned_cols=48 Identities=29% Similarity=0.464 Sum_probs=37.6
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG 478 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~ 478 (555)
|+++|+ ..|++. . .+++.+|++++|+||||||||||+++|.++..|.+
T Consensus 7 l~~~~~-~~~~~~---~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~ 54 (430)
T 1w1w_A 7 LELSNF-KSYRGV---T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRS 54 (430)
T ss_dssp EEEESC-SSCCSE---E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred EEEeCE-EEECCc---e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence 677787 577542 1 35667899999999999999999999999887754
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.86 E-value=6.9e-06 Score=86.74 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=45.2
Q ss_pred EEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 100 LENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 100 l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
.+++++.|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..|+|.+.
T Consensus 79 ~~~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 79 YEALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 356677776544 678888 899999999999999999999999999887777654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.86 E-value=1.1e-05 Score=77.86 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=33.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CceEEEECC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG--LEKP-----RGGEVLLGE 485 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G--~~~p-----~~G~v~~~~ 485 (555)
-|++|+.++|+||||||||||++.|++ ..+| ..|.+++.+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 488999999999999999999999999 5655 456666654
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.86 E-value=5.7e-07 Score=91.66 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=37.3
Q ss_pred eeEEcCCccceeceEEEEecCC------EEEEECCCCCcHHHHHHHHhCCCC--CCceE
Q 008750 430 LEFGYEDRLLFNRANLTIERGE------KTAIIGPNGCGKSTLLKLIMGLEK--PRGGE 480 (555)
Q Consensus 430 l~~~y~~~~ll~~vsl~i~~Ge------~iaI~G~NGsGKSTLlk~L~G~~~--p~~G~ 480 (555)
+++.|++...+++++..+..+. +|||+||||||||||+++|.+++. |..|.
T Consensus 66 l~~~~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~ 124 (321)
T 3tqc_A 66 LSFYVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN 124 (321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred HHHhhcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe
Confidence 3334444445666666666655 899999999999999999999887 44444
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.85 E-value=7.2e-06 Score=78.05 Aligned_cols=29 Identities=28% Similarity=0.366 Sum_probs=27.5
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
++|++++|+||||||||||+++|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999987
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=3.9e-06 Score=81.22 Aligned_cols=37 Identities=22% Similarity=0.175 Sum_probs=31.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
...+|+.|+|.|+||||||||+++|+|. .|.|.+.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~ 52 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTE 52 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECC
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEec
Confidence 4578999999999999999999999997 566665543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.1e-06 Score=86.21 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=32.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCceEEEECCce
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLE--------KPRGGEVLLGEHN 487 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~--------~p~~G~v~~~~~~ 487 (555)
++++|+|+||||||||+++|+|.. .|+.|.|.+++..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~ 49 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQL 49 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEE
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHH
Confidence 589999999999999999999987 7899998887644
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.84 E-value=6.4e-06 Score=77.91 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=26.8
Q ss_pred eEEEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 117 TWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 117 sl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
|+...+|+.++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.84 E-value=2.6e-06 Score=80.63 Aligned_cols=38 Identities=21% Similarity=0.118 Sum_probs=33.2
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
..+|++|+|+|+||||||||+++|++.+.+..|.|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 56789999999999999999999999988877776553
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.83 E-value=1.1e-05 Score=83.42 Aligned_cols=34 Identities=32% Similarity=0.438 Sum_probs=31.7
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
..+++++|++.+| +++|+||||||||||+++|.+
T Consensus 15 ~~~~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 15 RNLAPGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp TTCCSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceeeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3578899999999 999999999999999999986
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.82 E-value=9.8e-06 Score=82.38 Aligned_cols=54 Identities=15% Similarity=0.086 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHH-HHHHHHcCCCce--EEEEecC
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVP--MVIISHD 315 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~-~l~~~l~~~~~t--vIiiSHd 315 (555)
||+++.+|+..|...+.++++++.|+|. ++..... .+..+.++.+.. +|||-|=
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~--~~~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSC--CBHHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCC--CCHHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 8999999999999999999999999986 4444433 333444556777 8888763
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.2e-05 Score=80.87 Aligned_cols=35 Identities=31% Similarity=0.158 Sum_probs=30.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (555)
++.+++++|+|||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999998876655543
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.81 E-value=3.9e-06 Score=75.75 Aligned_cols=36 Identities=25% Similarity=0.412 Sum_probs=30.9
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGE 485 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G--~v~~~~ 485 (555)
+|+.++|+||||||||||+++|++...+ +| .+++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~ 72 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDA 72 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEET
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcH
Confidence 8999999999999999999999998877 46 555543
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.79 E-value=1.1e-05 Score=76.83 Aligned_cols=29 Identities=31% Similarity=0.517 Sum_probs=27.4
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
.+|+.|+|+||||||||||++.|++.++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 57999999999999999999999999876
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.1e-05 Score=76.33 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=34.8
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
++.+|.+++|+|++|||||||+++|++.++ .+.+++|+..+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-------------~~~~i~~D~~~~ 58 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-------------NCSVISQDDFFK 58 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-------------TEEEEEGGGGBC
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-------------CcEEEeCCcccc
Confidence 567799999999999999999999999864 257788876543
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=5.1e-05 Score=73.44 Aligned_cols=29 Identities=38% Similarity=0.534 Sum_probs=24.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceE
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~ 153 (555)
+++|||++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 58999999999999999999987766654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.77 E-value=4.2e-06 Score=91.42 Aligned_cols=40 Identities=30% Similarity=0.354 Sum_probs=35.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce-EEE-EcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG-NVI-KAK 158 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G-~I~-~~g 158 (555)
.+.+|++++|+|+||||||||+++|+|.+.|++| +|. +++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDg 406 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDG 406 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESS
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECC
Confidence 5779999999999999999999999999999886 674 654
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.75 E-value=2.5e-07 Score=95.31 Aligned_cols=59 Identities=19% Similarity=0.158 Sum_probs=49.0
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEE
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK 156 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~ 156 (555)
++.+++.+.|+...+++++++.+.+|.+++|+|+||+|||||++.|++.+.+..|+|.+
T Consensus 31 ie~~~~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v 89 (341)
T 2p67_A 31 VESRHPRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAV 89 (341)
T ss_dssp HHCCCHHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred hhcCCchhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEE
Confidence 34455555666667899999999999999999999999999999999998877666654
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=7.1e-06 Score=75.39 Aligned_cols=37 Identities=16% Similarity=0.210 Sum_probs=30.1
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~ 488 (555)
.+|++|+|+|+||||||||+++|++.+ |.+.+++..+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 468999999999999999999999864 5666665443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=7.7e-06 Score=75.14 Aligned_cols=34 Identities=24% Similarity=0.237 Sum_probs=28.8
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
.+|++++|+|+||||||||+++|++.+ |.+.+++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~ 39 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDG 39 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeC
Confidence 368999999999999999999999875 6666553
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=2.1e-05 Score=73.69 Aligned_cols=39 Identities=26% Similarity=0.359 Sum_probs=30.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-----CC------ceEEEECCceeee
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK-----PR------GGEVLLGEHNVLP 490 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~-----p~------~G~v~~~~~~~~~ 490 (555)
+|+|+|+||||||||++.|+|... |+ .|.+.++|..+..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~ 56 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKA 56 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEE
Confidence 689999999999999999999743 32 5678887765543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.74 E-value=3.5e-06 Score=85.91 Aligned_cols=45 Identities=27% Similarity=0.341 Sum_probs=40.3
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
++++|++.+|++|+|+|+||+||||++..|++.+.+..|.|.+.+
T Consensus 96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 567888899999999999999999999999999998888877653
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.4e-05 Score=82.37 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=37.6
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----eE-EEECCce
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLE--KPRG----GE-VLLGEHN 487 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~--~p~~----G~-v~~~~~~ 487 (555)
++.|++|++++|+||||||||||++.|++.. +|+. |. |++++..
T Consensus 125 ~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 125 GGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp TSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 5789999999999999999999999999987 6666 56 6776543
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.71 E-value=4.7e-06 Score=91.01 Aligned_cols=43 Identities=30% Similarity=0.324 Sum_probs=37.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEE-ECCcee
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG-EVL-LGEHNV 488 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G-~v~-~~~~~~ 488 (555)
.+.+|++|+|+|+||||||||+++|+|.+.|++| .+. +++..+
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 564 776543
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.71 E-value=1.9e-05 Score=82.60 Aligned_cols=40 Identities=28% Similarity=0.369 Sum_probs=35.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC------------CCCCCceEEEECC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG------------LEKPRGGEVLLGE 485 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G------------~~~p~~G~v~~~~ 485 (555)
.+..|++++|+|+||+|||||+++|+| ...|+.|.+.+.+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~ 67 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 67 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCC
Confidence 456899999999999999999999999 5678999998876
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.69 E-value=4.7e-06 Score=84.38 Aligned_cols=43 Identities=26% Similarity=0.291 Sum_probs=37.0
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
++|...+|++|+|+|+|||||||++..|++.+.+..|.|.+.+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 4556678999999999999999999999999998878776643
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.69 E-value=4.8e-06 Score=86.08 Aligned_cols=52 Identities=23% Similarity=0.262 Sum_probs=47.1
Q ss_pred ccEEEEeEEEEeCC-ceeee--------------eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 96 SGVKLENISKSYKG-VTVLK--------------DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 96 ~~i~l~nls~~y~~-~~vL~--------------~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..+.++||++.|+. +..|+ |+++.|.+|++++|+|++|+|||||++.|++.+
T Consensus 132 ~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 132 NKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 34789999999975 56888 999999999999999999999999999999865
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.68 E-value=1.4e-05 Score=73.17 Aligned_cols=29 Identities=24% Similarity=0.366 Sum_probs=25.2
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
..|.+|+|+|+||||||||+++|++.+.+
T Consensus 2 ~~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 2 AEKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp -CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35789999999999999999999997654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.2e-05 Score=75.92 Aligned_cols=31 Identities=19% Similarity=0.434 Sum_probs=26.6
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+...+|+.|+|+||||||||||++.|++.++
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4445899999999999999999999998765
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.66 E-value=4e-06 Score=84.71 Aligned_cols=61 Identities=15% Similarity=0.107 Sum_probs=39.9
Q ss_pred CChHHHHHHHHHHHhc--cCCCEEEEcCCCCCCCHHH-HHHHHHH---H-cCCCc--eEEEEecCHHHHHhhcceeE
Q 008750 260 FSSGWQMRMSLGKILL--QDPDLLLLDEPTNHLDLDT-IEWLEGY---L-GKQDV--PMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 260 LSGGqrqRv~lAraL~--~~p~lLlLDEPTs~LD~~~-~~~l~~~---l-~~~~~--tvIiiSHd~~~l~~~~dri~ 327 (555)
+|+|++ .+++.+. ..|.++++ |.+|... ...+.+. + ...+. .+.+++|+-.-+..++|.|.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHH
Confidence 899886 4556665 78999998 8888754 3333332 2 33453 56666787777777777665
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00023 Score=70.99 Aligned_cols=57 Identities=9% Similarity=0.067 Sum_probs=38.6
Q ss_pred ChHHHHHHHHHHHhccCCCEEEEcCCCCCCCH----------HHHHHHHHHHcC-------CCceEEEEecCHH
Q 008750 261 SSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL----------DTIEWLEGYLGK-------QDVPMVIISHDRA 317 (555)
Q Consensus 261 SGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~----------~~~~~l~~~l~~-------~~~tvIiiSHd~~ 317 (555)
+++++.+..++.+...+|.+|++||+.+-++. .....+...+.. .+..||.+|++++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~ 170 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQ 170 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGG
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChh
Confidence 46788888888888899999999999877653 222233333322 2345777888753
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.64 E-value=1.8e-05 Score=72.40 Aligned_cols=28 Identities=39% Similarity=0.372 Sum_probs=25.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
.|.+++|+|+||||||||+++|++.+.+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4788999999999999999999998753
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00072 Score=61.00 Aligned_cols=24 Identities=25% Similarity=0.556 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 689999999999999999999754
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.57 E-value=1.7e-05 Score=87.87 Aligned_cols=56 Identities=16% Similarity=0.168 Sum_probs=47.8
Q ss_pred eeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCc-eEEEEC
Q 008750 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRG-GEVLLG 484 (555)
Q Consensus 429 ~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~-G~v~~~ 484 (555)
++.--|+...+++.+++.+..|+.++|+||||||||||+++|++...+.. |.+.+.
T Consensus 39 ~l~~i~G~~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~ 95 (604)
T 3k1j_A 39 LIDQVIGQEHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVF 95 (604)
T ss_dssp HHHHCCSCHHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEE
T ss_pred ccceEECchhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEe
Confidence 34445666778999999999999999999999999999999999999887 566554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.56 E-value=1.2e-06 Score=90.31 Aligned_cols=53 Identities=21% Similarity=0.138 Sum_probs=42.1
Q ss_pred eeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008750 430 LEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (555)
Q Consensus 430 l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~ 482 (555)
+.+.|+...+++++++.+.+|.+|+|+|+||+|||||++.|++.+.+..|.|.
T Consensus 36 ~~~~~~~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~ 88 (341)
T 2p67_A 36 PRHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVA 88 (341)
T ss_dssp HHHHHHHHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred chhhhHHHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 33344444577788888899999999999999999999999988776655543
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00043 Score=71.41 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=25.2
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+++.|.|++|+|||||...++...
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998887644
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=97.52 E-value=1.4e-05 Score=82.59 Aligned_cols=51 Identities=27% Similarity=0.341 Sum_probs=45.3
Q ss_pred eEEEEeeeEEcCC-cccee--------------ceEEEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 424 VVTIKNLEFGYED-RLLFN--------------RANLTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 424 ~l~~~~l~~~y~~-~~ll~--------------~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
-+.++|+++.|+. +..++ |+.+.|.+|++++|+||+|||||||++.|++..
T Consensus 133 ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 133 KILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp SCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 3678999999985 45788 899999999999999999999999999998754
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=5.7e-05 Score=68.03 Aligned_cols=29 Identities=38% Similarity=0.547 Sum_probs=24.1
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHH
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
+.++++.+| +.+|+|||||||||++.+|.
T Consensus 16 ~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345555565 99999999999999999987
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.49 E-value=2.3e-06 Score=93.69 Aligned_cols=59 Identities=22% Similarity=0.228 Sum_probs=49.4
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
-++++.+.|....++.++++++ +|+.++|+||||+|||||+++|++...+..|.|.+.+
T Consensus 85 G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 85 GLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred cHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 3466666666666888889888 8999999999999999999999999988878776653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=5.6e-05 Score=68.09 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=24.0
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 3445555554 89999999999999999985
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=1.4e-05 Score=76.56 Aligned_cols=34 Identities=29% Similarity=0.386 Sum_probs=28.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC---CCCceEEEE
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE---EPDSGNVIK 156 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~---~p~~G~I~~ 156 (555)
+.+++|+|++||||||++++|++.+ .++.|.|..
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 5689999999999999999999866 566666654
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=5.5e-05 Score=71.71 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=25.9
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
-|++|+.++|+||||||||||++.|++
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999999999999
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=3.4e-05 Score=77.69 Aligned_cols=32 Identities=19% Similarity=0.305 Sum_probs=29.7
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
.+|++++|+|+||+||||++..|++.+.++.|
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G 134 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH 134 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence 47999999999999999999999999988777
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=3.2e-05 Score=71.32 Aligned_cols=31 Identities=35% Similarity=0.370 Sum_probs=26.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
.+|++++|+|++||||||++++|++.+.+ .|
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g 33 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HG 33 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CC
Confidence 46899999999999999999999998755 45
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=5.6e-05 Score=71.44 Aligned_cols=30 Identities=23% Similarity=0.127 Sum_probs=27.5
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
++.+|.+|+|+|++|||||||++.|++.+.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 567899999999999999999999999764
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.37 E-value=5.2e-05 Score=73.33 Aligned_cols=43 Identities=21% Similarity=0.184 Sum_probs=30.7
Q ss_pred eeeeeeEEEE---CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q 008750 112 VLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (555)
Q Consensus 112 vL~~vsl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (555)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+.
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~ 57 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVI 57 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCce
Confidence 3566666666 8999999999999999999999999877 55554
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=3.3e-05 Score=73.84 Aligned_cols=35 Identities=29% Similarity=0.341 Sum_probs=29.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC---CCCceEEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE---KPRGGEVLL 483 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~---~p~~G~v~~ 483 (555)
.+.+|+|+|++||||||++++|++.+ .+++|.+..
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~ 41 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYR 41 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceee
Confidence 35789999999999999999998765 667776654
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.37 E-value=1.3e-05 Score=83.00 Aligned_cols=54 Identities=19% Similarity=0.223 Sum_probs=38.9
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
...+.+.|++..|+.+.++++++|+| +|||++|+|||||++.|.|...+..|.+
T Consensus 15 ~~~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~ 68 (361)
T 2qag_A 15 PGYVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVI 68 (361)
T ss_dssp ------CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC------
T ss_pred CceEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcc
Confidence 45689999999998888999999987 9999999999999999998765555443
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00012 Score=76.80 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=28.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHH--HhCCCCCCce
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKL--IMGLEKPRGG 479 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~--L~G~~~p~~G 479 (555)
-|++|+.++|+||||||||||++. +.+..+++.|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~G 209 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIG 209 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccC
Confidence 578999999999999999999994 4577766544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.35 E-value=7.5e-06 Score=89.55 Aligned_cols=60 Identities=20% Similarity=0.280 Sum_probs=47.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
+-++++...|....++.++++++ +|+.++|+||||||||||+++|++.+.+..|.|.+.+
T Consensus 84 ~G~~~vk~~i~~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~ 143 (543)
T 3m6a_A 84 HGLEKVKERILEYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGG 143 (543)
T ss_dssp SSCHHHHHHHHHHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC
T ss_pred ccHHHHHHHHHHHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecc
Confidence 34455655565445677777777 8999999999999999999999999988888876654
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00032 Score=74.56 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=30.9
Q ss_pred cCCCEEEEcCCCCCCCH-HHHHHHHHHH---cCCCceEEEEecCH
Q 008750 276 QDPDLLLLDEPTNHLDL-DTIEWLEGYL---GKQDVPMVIISHDR 316 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~-~~~~~l~~~l---~~~~~tvIiiSHd~ 316 (555)
.+|++|++||+..-.+. ...+.|...+ .+.+..+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999887764 4555555554 45688999999983
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=9.1e-05 Score=71.62 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=36.2
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCC-CCCHHHH-HHHHHHHcCC-Cc-eEEEE-ecCHHHHHhhc
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTN-HLDLDTI-EWLEGYLGKQ-DV-PMVII-SHDRAFLDQLC 323 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs-~LD~~~~-~~l~~~l~~~-~~-tvIii-SHd~~~l~~~~ 323 (555)
.+.|.-.+... ..+.+.+++|+||.-. ++|.... ..+..++... +. +++++ |.+.+.+.++.
T Consensus 161 ~Tpg~l~~~l~--~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~ 227 (235)
T 3llm_A 161 CTVGVLLRKLE--AGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMSATIDTSMFCEYF 227 (235)
T ss_dssp EEHHHHHHHHH--HCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEECSSCCHHHHHHT
T ss_pred ECHHHHHHHHH--hhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEecCCCHHHHHHHc
Confidence 35576666543 3689999999999987 5777665 3444444322 23 33333 45544444433
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=5.8e-05 Score=69.60 Aligned_cols=36 Identities=25% Similarity=0.229 Sum_probs=28.9
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEEC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLG 484 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G--~v~~~ 484 (555)
.+|+.|+|+|++||||||++++|++.+.+ .| .+.++
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d 40 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLD 40 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEEC
Confidence 46899999999999999999999997755 44 44444
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.30 E-value=5.3e-05 Score=78.13 Aligned_cols=37 Identities=24% Similarity=0.263 Sum_probs=32.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
++.+++|+|++|||||||++.|+|.+.+..|+|.+.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~ 109 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLA 109 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEe
Confidence 5678999999999999999999999888888776543
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.28 E-value=8.1e-05 Score=72.00 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=29.8
Q ss_pred eeceEEEEe---cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 440 FNRANLTIE---RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 440 l~~vsl~i~---~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
+.++||.+. +|..|+|.|++||||||+++.|+..+.+ .+.+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~ 56 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDV 56 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCc
Confidence 445555555 8999999999999999999999998887 5444
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00071 Score=68.57 Aligned_cols=27 Identities=22% Similarity=0.286 Sum_probs=24.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
-|++|+++.|.|++|+|||||+..++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999988875
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00023 Score=67.47 Aligned_cols=30 Identities=37% Similarity=0.492 Sum_probs=24.5
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
+.++.+.+| +.+|+|+|||||||++.+|.-
T Consensus 16 ~~~i~f~~~-~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 16 DTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp SEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEeCCC-eEEEEcCCCCCHHHHHHHHHH
Confidence 445566665 999999999999999998863
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.22 E-value=3.6e-05 Score=81.26 Aligned_cols=52 Identities=21% Similarity=0.173 Sum_probs=41.7
Q ss_pred eeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008750 429 NLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 429 ~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
+++..|++.. ++++|+ +|++++|+|+|||||||++..|++.+.+..+.|.+.
T Consensus 81 ~L~~~~~~~~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllv 132 (425)
T 2ffh_A 81 ALKEALGGEA--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLV 132 (425)
T ss_dssp HHHHHTTSSC--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred HHHHHhCCCc--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEe
Confidence 4555565432 567777 899999999999999999999999999887777654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.0001 Score=75.47 Aligned_cols=36 Identities=22% Similarity=0.312 Sum_probs=27.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhC-CCCCCceEEEECCc
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMG-LEKPRGGEVLLGEH 486 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G-~~~p~~G~v~~~~~ 486 (555)
.++.|+||||+|||||+++|++ ++.|..|.+.+++.
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~ 73 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVR 73 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecce
Confidence 3499999999999999999999 78899998877653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=5.4e-05 Score=70.98 Aligned_cols=42 Identities=33% Similarity=0.507 Sum_probs=31.6
Q ss_pred EEEeCCc-eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 104 SKSYKGV-TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 104 s~~y~~~-~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++.|++. .+++++||..+++ +++|+|++|+|||||++.+.+-
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4566553 6899999988887 7899999999999999999873
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.19 E-value=2.8e-05 Score=83.89 Aligned_cols=57 Identities=19% Similarity=0.332 Sum_probs=44.9
Q ss_pred EEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCc
Q 008750 426 TIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEH 486 (555)
Q Consensus 426 ~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~ 486 (555)
+++++...|.+...++++++.+++| +.|+||||||||||+++|++... .+.+.+.+.
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~ 98 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGS 98 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGG
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehh
Confidence 4455555555556788999999999 99999999999999999999765 556666554
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00023 Score=66.06 Aligned_cols=35 Identities=34% Similarity=0.508 Sum_probs=21.4
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.+++++++..+.. +++|+|++|+|||||++.+.+-
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999998887 8999999999999999999983
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=5.2e-05 Score=72.04 Aligned_cols=39 Identities=21% Similarity=0.193 Sum_probs=33.0
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCce--EEEEc
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSG--NVIKA 157 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G--~I~~~ 157 (555)
.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.++
T Consensus 21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~ 61 (211)
T 1m7g_A 21 RNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLD 61 (211)
T ss_dssp HTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEC
T ss_pred cCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEEC
Confidence 3567899999999999999999999999877777 55544
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00027 Score=71.10 Aligned_cols=29 Identities=28% Similarity=0.315 Sum_probs=25.8
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.++..+.|.||+|+|||||+++|++..
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 35678889999999999999999999875
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0001 Score=75.93 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=29.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
.+.+|+|+|++|||||||++.|+|.+.+..|.|.+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V 107 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSV 107 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEE
Confidence 46789999999999999999999987777665544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00038 Score=63.52 Aligned_cols=27 Identities=41% Similarity=0.603 Sum_probs=23.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+|.+|+|+|++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 368899999999999999999999864
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.13 E-value=1.4e-05 Score=80.56 Aligned_cols=55 Identities=25% Similarity=0.193 Sum_probs=43.6
Q ss_pred EEeEEEEeCCceeeee-eeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 100 LENISKSYKGVTVLKD-VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 100 l~nls~~y~~~~vL~~-vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
.+++...|++.. ++ ++|+++ |.+++++|+||+||||++..|++.+.+..|+|.+.
T Consensus 77 ~~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 77 YDELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp HHHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456666676543 56 788876 99999999999999999999999998776666543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0004 Score=69.53 Aligned_cols=31 Identities=19% Similarity=0.231 Sum_probs=26.8
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
..+.|+||+|+|||||+++|++...+..|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5799999999999999999999887766543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00024 Score=66.84 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+|||||||+.++|+++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6899999999999999999984
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.09 E-value=8.4e-05 Score=80.13 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=43.8
Q ss_pred EEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 99 ~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
+++++...|.+..+++++++.+++| +.|+||||+|||||+++|++... .+.|.+++
T Consensus 42 ~l~~lv~~l~~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g 97 (499)
T 2dhr_A 42 ELKEIVEFLKNPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASG 97 (499)
T ss_dssp HHHHHHHHHHCGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEG
T ss_pred HHHHHHHHhhchhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEeh
Confidence 3444444455556788899999999 99999999999999999999874 56666654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0011 Score=70.47 Aligned_cols=130 Identities=15% Similarity=0.159 Sum_probs=78.8
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEM 190 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~ 190 (555)
+.|+.+.-=+++|+.+.|.|++|+|||||+.-|+.......| ..+.|++=+ ++..+...
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g--------~~vl~~slE------~~~~~l~~------- 246 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG--------VGVGIYSLE------MPAAQLTL------- 246 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC--------CCEEEEESS------SCHHHHHH-------
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC--------CeEEEEECC------CCHHHHHH-------
Confidence 456666645899999999999999999999988865432222 234555422 22221110
Q ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHH
Q 008750 191 EIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270 (555)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~l 270 (555)
++. ....|++..... -..||..+.+|+.-
T Consensus 247 -----------------------------------------------R~~--~~~~~i~~~~l~--~g~l~~~~~~~~~~ 275 (444)
T 2q6t_A 247 -----------------------------------------------RMM--CSEARIDMNRVR--LGQLTDRDFSRLVD 275 (444)
T ss_dssp -----------------------------------------------HHH--HHHTTCCTTTCC--GGGCCHHHHHHHHH
T ss_pred -----------------------------------------------HHH--HHHcCCCHHHHh--CCCCCHHHHHHHHH
Confidence 000 011233211111 13689999999998
Q ss_pred HHHhccCCCEEEEcCCCCCCCHHHHH-HHHHHHcCCCceEEEEec
Q 008750 271 GKILLQDPDLLLLDEPTNHLDLDTIE-WLEGYLGKQDVPMVIISH 314 (555)
Q Consensus 271 AraL~~~p~lLlLDEPTs~LD~~~~~-~l~~~l~~~~~tvIiiSH 314 (555)
|...+.+.++++.|+|. ++..... .+..+.++.+..+|||-+
T Consensus 276 a~~~l~~~~l~i~d~~~--~s~~~l~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 276 VASRLSEAPIYIDDTPD--LTLMEVRARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHTSCEEEECCTT--CBHHHHHHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 88878888899999764 4443333 334444456777887754
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00028 Score=66.84 Aligned_cols=30 Identities=40% Similarity=0.663 Sum_probs=23.7
Q ss_pred eceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 441 NRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 441 ~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.+.++++.+| ..+|+|||||||||++.+|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3445555554 89999999999999999884
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0002 Score=67.22 Aligned_cols=21 Identities=33% Similarity=0.694 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+|||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999998
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=9.8e-05 Score=70.10 Aligned_cols=42 Identities=24% Similarity=0.148 Sum_probs=35.2
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce--EEEECCc
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG--EVLLGEH 486 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G--~v~~~~~ 486 (555)
+.+.+|..|+|+|++||||||+.+.|++.+.|..| .+.+++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 34567999999999999999999999998887777 6666543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00043 Score=73.46 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=29.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC------------CCceEEEEcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE------------PDSGNVIKAKS 159 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~------------p~~G~I~~~g~ 159 (555)
+++|||+||+|||||++.|+|... |..|.+.++|.
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~ 228 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR 228 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE
Confidence 799999999999999999999854 56677777754
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00016 Score=67.71 Aligned_cols=52 Identities=23% Similarity=0.365 Sum_probs=37.0
Q ss_pred EcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC--------CCCCceEEEECC
Q 008750 433 GYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL--------EKPRGGEVLLGE 485 (555)
Q Consensus 433 ~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~--------~~p~~G~v~~~~ 485 (555)
.|++ ..++++++|..+.+ +|+|+|++|+|||||++.+.+. ..+..+.+.+++
T Consensus 8 ~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~ 68 (198)
T 1f6b_A 8 IYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAG 68 (198)
T ss_dssp -----CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETT
T ss_pred HHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECC
Confidence 4544 35778888887776 7999999999999999999873 223456666664
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00024 Score=65.88 Aligned_cols=32 Identities=31% Similarity=0.453 Sum_probs=26.6
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999975
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00032 Score=71.88 Aligned_cols=31 Identities=39% Similarity=0.640 Sum_probs=24.2
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+.+..+++.+| ..+|+||||||||||+.+|.
T Consensus 14 ~~~~~i~f~~~-~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccCeEEcCCCC-eEEEECCCCCCHHHHHHHHH
Confidence 34455555554 88999999999999999873
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00026 Score=66.43 Aligned_cols=21 Identities=33% Similarity=0.632 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+|+|||||||++++|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00033 Score=63.96 Aligned_cols=27 Identities=41% Similarity=0.613 Sum_probs=23.6
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|.+++|||++|+|||||++.|+|..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 367899999999999999999999975
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0003 Score=73.42 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=32.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcC-----------CCCCceEEEEcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQ-----------EEPDSGNVIKAK 158 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~-----------~~p~~G~I~~~g 158 (555)
.+..|.+++|||.||+|||||++.|+|. +.|..|.|.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3457889999999999999999999998 667788887754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00057 Score=63.35 Aligned_cols=33 Identities=27% Similarity=0.481 Sum_probs=21.1
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
+++++++..+.. +|+|+|++|+|||||++.+.+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 578888888877 899999999999999999997
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00011 Score=76.15 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=37.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
.+.+.+++..|.++.+.++++|.| +|+|++|+|||||++.|.|...+..+
T Consensus 17 ~v~~~~l~~~~~~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 17 YVGFANLPNQVHRKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp ----CCHHHHHHTHHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----
T ss_pred eEEeccchHHhCCeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 478888988888777888998877 99999999999999999887554433
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00058 Score=72.49 Aligned_cols=38 Identities=37% Similarity=0.561 Sum_probs=31.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC------------CCceEEEECCcee
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEK------------PRGGEVLLGEHNV 488 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~------------p~~G~v~~~~~~~ 488 (555)
-+|+|+|+||||||||++.|+|... |..|.+.++|..+
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~ 230 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKY 230 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEE
Confidence 3799999999999999999999854 6678888877543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00031 Score=65.10 Aligned_cols=32 Identities=22% Similarity=0.429 Sum_probs=26.3
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
++|+.+.+|.+|+|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 46788889999999999999999999999865
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.00016 Score=78.46 Aligned_cols=34 Identities=26% Similarity=0.391 Sum_probs=30.5
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.+++++|++.+| ..+|+|+||||||||+++|..+
T Consensus 50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 577899999999 9999999999999999999543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0002 Score=66.36 Aligned_cols=36 Identities=31% Similarity=0.419 Sum_probs=30.1
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
...+|..|.|+|++||||||+.+.|++.+.+..+.+
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 345789999999999999999999998877655544
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.00021 Score=66.13 Aligned_cols=35 Identities=34% Similarity=0.403 Sum_probs=29.7
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
..+|.+++|+|.+||||||+++.|+..+.+..|.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~ 44 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRV 44 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 34788999999999999999999999887655544
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.95 E-value=4.2e-05 Score=77.07 Aligned_cols=54 Identities=19% Similarity=0.086 Sum_probs=40.5
Q ss_pred EeeeEEcCCccceec-eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008750 428 KNLEFGYEDRLLFNR-ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 428 ~~l~~~y~~~~ll~~-vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
+++...|++.. .+ ++|+++ |.+++++|+||+||||++..|++.+.+..+.|.+.
T Consensus 78 ~~l~~~~~~~~--~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~ 132 (297)
T 1j8m_F 78 DELSNLFGGDK--EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLV 132 (297)
T ss_dssp HHHHHHTTCSC--CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHhcccc--ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 34444454332 44 667766 99999999999999999999999988776666543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00029 Score=72.73 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=31.8
Q ss_pred cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEE
Q 008750 438 LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVL 482 (555)
Q Consensus 438 ~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G--~~~p~~G~v~ 482 (555)
.++++++++++ .|+|+|++|||||||++.|+| .+++.+|.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT 68 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVT 68 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCC
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCccc
Confidence 36788888888 999999999999999999999 5566666543
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00076 Score=69.22 Aligned_cols=28 Identities=32% Similarity=0.470 Sum_probs=24.2
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999997653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00026 Score=68.10 Aligned_cols=40 Identities=15% Similarity=0.111 Sum_probs=28.6
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHH-hCCCCCCceEEEE
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLI-MGLEKPRGGEVLL 483 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L-~G~~~p~~G~v~~ 483 (555)
.--+++|+.++|+||||||||||+..+ .+..++..+.+++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~ 57 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYV 57 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 446899999999999999999996555 4443333334444
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.00052 Score=71.60 Aligned_cols=40 Identities=23% Similarity=0.357 Sum_probs=33.0
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~-----------~~p~~G~v~~~~ 485 (555)
.+..|.+|+|+|+||+|||||+++|+|. ..|..|.+.+.+
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 3467889999999999999999999998 667788887764
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0013 Score=59.39 Aligned_cols=23 Identities=35% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|++|+|||||++.|+|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999964
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0006 Score=62.51 Aligned_cols=22 Identities=27% Similarity=0.622 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00084 Score=69.48 Aligned_cols=39 Identities=21% Similarity=0.471 Sum_probs=30.4
Q ss_pred CCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCceEEEECCcee
Q 008750 450 GEK-TAIIGPNGCGKSTLLKLIMGLEK-----------PRGGEVLLGEHNV 488 (555)
Q Consensus 450 Ge~-iaI~G~NGsGKSTLlk~L~G~~~-----------p~~G~v~~~~~~~ 488 (555)
|-. |+|+|++|||||||++.|+|... |..|.+.+++..+
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 444 99999999999999999999876 5678888876443
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00055 Score=64.47 Aligned_cols=29 Identities=17% Similarity=0.273 Sum_probs=26.1
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
..+|.+++|+|++|||||||.+.|+..++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 45789999999999999999999998764
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00091 Score=61.27 Aligned_cols=22 Identities=36% Similarity=0.605 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|++|+|||||++.|+|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=96.80 E-value=0.013 Score=60.62 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.0
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|+++.|.|+.|+|||||+..++-.
T Consensus 71 l~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 71 IPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 689999999999999999999777643
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00049 Score=64.82 Aligned_cols=30 Identities=30% Similarity=0.483 Sum_probs=26.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.+.+|..|+|+||+|||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467899999999999999999999987664
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00059 Score=62.77 Aligned_cols=26 Identities=38% Similarity=0.585 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~ 150 (555)
+++|||++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.76 E-value=7.8e-05 Score=76.25 Aligned_cols=47 Identities=23% Similarity=0.249 Sum_probs=41.0
Q ss_pred EeCCceeeeeeeEEEECCCE--EEEEcCCCccHHHHHHHHHcCCCCCce
Q 008750 106 SYKGVTVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQEEPDSG 152 (555)
Q Consensus 106 ~y~~~~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~~p~~G 152 (555)
.||...+++.++..|..|++ +.|.||+|+||||+++++++.+.+..+
T Consensus 27 ~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 27 VYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp CCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred hcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 35667788999999999998 999999999999999999998766554
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00036 Score=71.87 Aligned_cols=36 Identities=28% Similarity=0.397 Sum_probs=31.3
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v 481 (555)
-|.+|+.+.|.||||||||||+..++....+..|.|
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~V 92 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVA 92 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 378999999999999999999999998877666644
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00082 Score=61.81 Aligned_cols=23 Identities=43% Similarity=0.707 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|++|||||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999964
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.00073 Score=62.22 Aligned_cols=25 Identities=28% Similarity=0.546 Sum_probs=22.2
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
.+|..|+|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999974
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0052 Score=58.98 Aligned_cols=53 Identities=21% Similarity=0.166 Sum_probs=39.5
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecC----------HHHHHhhcceeEEec
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHD----------RAFLDQLCTKIVETE 330 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd----------~~~l~~~~dri~~l~ 330 (555)
.+|+++++||.-. |+....+.+.. |.+.+.+||++-|+ ...+..+||.|..|.
T Consensus 88 ~~~dvViIDEaQ~-l~~~~ve~l~~-L~~~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 88 DETKVIGIDEVQF-FDDRICEVANI-LAENGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TTCCEEEECSGGG-SCTHHHHHHHH-HHHTTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCCEEEEecCcc-CcHHHHHHHHH-HHhCCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 3589999999964 87776655544 43459999999993 344556899999875
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.62 E-value=8.6e-05 Score=75.92 Aligned_cols=45 Identities=16% Similarity=0.299 Sum_probs=37.1
Q ss_pred cCCccceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCCCCCc
Q 008750 434 YEDRLLFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLEKPRG 478 (555)
Q Consensus 434 y~~~~ll~~vsl~i~~Ge~--iaI~G~NGsGKSTLlk~L~G~~~p~~ 478 (555)
|+...+++.++..|..|+. +.+.||+|+||||++++|++.+.+..
T Consensus 28 ~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~ 74 (340)
T 1sxj_C 28 YGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN 74 (340)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS
T ss_pred cCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC
Confidence 4455577778888889988 99999999999999999998765443
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0013 Score=68.18 Aligned_cols=31 Identities=35% Similarity=0.689 Sum_probs=26.0
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+.+..+++.+| ..+|+|+||+||||+|.+|.
T Consensus 16 ~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 16 HVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred ccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 45666776665 89999999999999999985
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0002 Score=73.54 Aligned_cols=37 Identities=27% Similarity=0.303 Sum_probs=33.4
Q ss_pred eeeeeeeEEEECCCE--EEEEcCCCccHHHHHHHHHcCC
Q 008750 111 TVLKDVTWEVKKGEK--VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~--~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 367888888999998 9999999999999999999875
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0052 Score=57.89 Aligned_cols=108 Identities=17% Similarity=0.189 Sum_probs=0.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc-------------CCCceEEEEecccccCcCccHHHHHHHhhHHH
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA-------------KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEE 189 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~-------------g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~ 189 (555)
...+.|.|+.|+|||||++.++..+......+... ....-+.+-......
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------- 107 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTK----------------- 107 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGG-----------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCccccc-----------------
Q ss_pred HHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHH
Q 008750 190 MEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269 (555)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~ 269 (555)
...+..++..+......
T Consensus 108 ----------------------------------------------~~~~~~~~~~~~~~~~~----------------- 124 (250)
T 1njg_A 108 ----------------------------------------------VEDTRDLLDNVQYAPAR----------------- 124 (250)
T ss_dssp ----------------------------------------------HHHHHHHHHSCCCSCSS-----------------
T ss_pred ----------------------------------------------HHHHHHHHHHhhhchhc-----------------
Q ss_pred HHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHH
Q 008750 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRA 317 (555)
Q Consensus 270 lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~ 317 (555)
.+|.+|++||.-. ||......|...+.+ .+..+|++|++..
T Consensus 125 ------~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 ------GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp ------SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred ------CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.58 E-value=0.001 Score=64.17 Aligned_cols=27 Identities=37% Similarity=0.446 Sum_probs=23.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
+-.+|.+|+|+|++||||||+.+.|++
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 345788999999999999999999986
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00084 Score=62.00 Aligned_cols=34 Identities=29% Similarity=0.259 Sum_probs=27.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---ceEEEEC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR---GGEVLLG 484 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~p~---~G~v~~~ 484 (555)
..++|+|++|||||||++.|++.+++. -|.+..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~ 43 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHT 43 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeC
Confidence 589999999999999999999876543 3555554
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0021 Score=63.50 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=23.6
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++..+.|.||.|+|||||++.|+...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 345679999999999999999999865
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00026 Score=72.65 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=31.7
Q ss_pred ceeceEEEEecCCE--EEEECCCCCcHHHHHHHHhCCC
Q 008750 439 LFNRANLTIERGEK--TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 439 ll~~vsl~i~~Ge~--iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+++.+++.+.+|++ |+|+|++||||||+.++|++.+
T Consensus 11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 56777888889998 9999999999999999998753
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00092 Score=61.52 Aligned_cols=26 Identities=38% Similarity=0.492 Sum_probs=22.6
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999853
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.00086 Score=62.85 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..+++|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4589999999999999999999765
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.007 Score=61.06 Aligned_cols=56 Identities=18% Similarity=0.325 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHh--c--cCCCEEEEcCCCCCCC-H---------------HH------HHHHHHHHcCCCceEEEEecC
Q 008750 262 SGWQMRMSLGKIL--L--QDPDLLLLDEPTNHLD-L---------------DT------IEWLEGYLGKQDVPMVIISHD 315 (555)
Q Consensus 262 GGqrqRv~lAraL--~--~~p~lLlLDEPTs~LD-~---------------~~------~~~l~~~l~~~~~tvIiiSHd 315 (555)
-+|++.+.++..| + .+|+++++|--++-.- . +. ...|..++++.+.++|+|-|=
T Consensus 92 ~~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV 171 (333)
T 3io5_A 92 SLEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHT 171 (333)
T ss_dssp BHHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCe
Confidence 3566656677666 3 4799999998777641 0 11 111233456789999999998
Q ss_pred HH
Q 008750 316 RA 317 (555)
Q Consensus 316 ~~ 317 (555)
..
T Consensus 172 ~k 173 (333)
T 3io5_A 172 YE 173 (333)
T ss_dssp --
T ss_pred ee
Confidence 76
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=63.92 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.2
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+|.+++|+|++||||||+.++|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 568899999999999999999999743
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0024 Score=64.44 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
+..+.|.||+|+|||||++.|++...+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 457899999999999999999987643
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00095 Score=62.54 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
..+|+|+|++|||||||.+.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0008 Score=67.68 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=23.1
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
++.+|+|+|++|+|||||++.|.|..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 34489999999999999999999964
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00091 Score=65.22 Aligned_cols=31 Identities=39% Similarity=0.609 Sum_probs=23.5
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+++.+..| +.|+||+|||||||+++|++...
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33344444 99999999999999999998754
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0012 Score=60.87 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=23.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
.+++|+|++|||||||++.|.+.+.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~ 32 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCA 32 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccc
Confidence 58999999999999999999987654
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0021 Score=61.85 Aligned_cols=28 Identities=29% Similarity=0.498 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
+|+|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 6899999999999999999998776554
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.00072 Score=66.11 Aligned_cols=38 Identities=34% Similarity=0.276 Sum_probs=29.6
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAK 158 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g 158 (555)
....+.++.|+|++||||||+.+.|+..+. .+.+.+++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~ 65 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDG 65 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEec
Confidence 445677899999999999999999998764 23455543
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0011 Score=64.64 Aligned_cols=31 Identities=39% Similarity=0.565 Sum_probs=23.4
Q ss_pred eeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 116 VTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 116 vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++.++.| +.|+||+|+|||||+++|++...
T Consensus 40 ~~~~~~~~--vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 40 LGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp ---CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred cCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence 33334444 89999999999999999998753
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.00082 Score=65.09 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.-+++|+|++||||||+.+.|+..+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999999543
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.27 E-value=0.006 Score=56.05 Aligned_cols=38 Identities=34% Similarity=0.587 Sum_probs=27.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC-----CCCCce----EEEECCceee
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL-----EKPRGG----EVLLGEHNVL 489 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~-----~~p~~G----~v~~~~~~~~ 489 (555)
+|+|+|+.|+|||||++.+++. ..|+.+ .+.+++..+.
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 68 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYL 68 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEE
Confidence 6999999999999999766543 456656 4555554443
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0055 Score=56.31 Aligned_cols=28 Identities=39% Similarity=0.717 Sum_probs=22.0
Q ss_pred EEEEEcCCCccHHHHHHHH-HcC----CCCCce
Q 008750 125 KVGLVGVNGAGKTTQLRII-AGQ----EEPDSG 152 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i-~G~----~~p~~G 152 (555)
+++|+|+.|+|||||++.+ .+. +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 6999999999999999655 444 456655
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.25 E-value=0.0022 Score=57.91 Aligned_cols=23 Identities=17% Similarity=0.037 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998654
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0015 Score=68.11 Aligned_cols=48 Identities=25% Similarity=0.376 Sum_probs=36.6
Q ss_pred CceeeeeeeEEEE---CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEc
Q 008750 109 GVTVLKDVTWEVK---KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157 (555)
Q Consensus 109 ~~~vL~~vsl~i~---~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~ 157 (555)
+.+++-|+ |... .+..++|+|++|||||||++.|++...+..+.|.+.
T Consensus 19 g~~v~~d~-~~~~~~~~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 19 GGLVLVDI-WKRGGDRTNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp SCEEEECT-TCCBTTBCCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CCeEEEec-ccCcCccccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 44565555 3222 567899999999999999999999877777777654
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=96.24 E-value=0.036 Score=59.56 Aligned_cols=34 Identities=26% Similarity=0.229 Sum_probs=26.7
Q ss_pred eeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 113 LKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 113 L~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
|+.+.-=+.+|+.+.|.|++|+|||||+--|+-.
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 4433324899999999999999999998776643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.037 Score=58.44 Aligned_cols=28 Identities=32% Similarity=0.414 Sum_probs=24.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
++.+++++|++|+||||++.-|+..+..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 4679999999999999999999977653
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0016 Score=70.14 Aligned_cols=42 Identities=17% Similarity=0.219 Sum_probs=33.3
Q ss_pred ceEEEEecCCEEEEECCCCCcHHHHHHHHhC--CCCCCceEEEE
Q 008750 442 RANLTIERGEKTAIIGPNGCGKSTLLKLIMG--LEKPRGGEVLL 483 (555)
Q Consensus 442 ~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G--~~~p~~G~v~~ 483 (555)
.+.+++.++.+++|+|++||||||+++.|.. +..+..|.+.+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l 202 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRF 202 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEE
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEE
Confidence 4778999999999999999999999999875 44444444433
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0024 Score=57.65 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.|+|+|+.||||||+.+.|+..
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999764
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0036 Score=64.52 Aligned_cols=24 Identities=33% Similarity=0.591 Sum_probs=22.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
|-+++|||.+|+|||||++.|+|-
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~ 25 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKA 25 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999984
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0015 Score=63.72 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=29.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCce
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHN 487 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~ 487 (555)
...+..|.|+|++||||||+.+.|+..+.. +.+.+++..
T Consensus 29 ~~~~~~i~l~G~~GsGKSTla~~L~~~l~~--~~~~~~~D~ 67 (253)
T 2p5t_B 29 SKQPIAILLGGQSGAGKTTIHRIKQKEFQG--NIVIIDGDS 67 (253)
T ss_dssp CSSCEEEEEESCGGGTTHHHHHHHHHHTTT--CCEEECGGG
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHhcCC--CcEEEecHH
Confidence 445778999999999999999999886642 345555543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0031 Score=57.40 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997653
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0016 Score=66.95 Aligned_cols=30 Identities=27% Similarity=0.442 Sum_probs=25.8
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
-|++|+.+.|.||||||||||+..++....
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999888875443
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0013 Score=73.44 Aligned_cols=33 Identities=21% Similarity=0.221 Sum_probs=26.9
Q ss_pred EEEEecCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 444 NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 444 sl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
++.+.+|.+|+|+|+||+|||||++.|++...+
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~ 35 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGA 35 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence 467889999999999999999999999965543
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.013 Score=71.15 Aligned_cols=30 Identities=23% Similarity=0.306 Sum_probs=27.2
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
|.+|+.+.|.|++|+|||||+..++.....
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~ 758 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQR 758 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHH
Confidence 899999999999999999999999876543
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0028 Score=60.02 Aligned_cols=24 Identities=29% Similarity=0.288 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
.+-+|+|+|++||||||+.+.|+.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 355899999999999999999987
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0036 Score=57.51 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|-+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0027 Score=57.95 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 59999999999999999998643
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0068 Score=64.30 Aligned_cols=53 Identities=15% Similarity=0.108 Sum_probs=37.5
Q ss_pred CChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHH-HHHHcCCCce--EEEEec
Q 008750 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL-EGYLGKQDVP--MVIISH 314 (555)
Q Consensus 260 LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l-~~~l~~~~~t--vIiiSH 314 (555)
|+..+.+++.-|...+.+.+++|.|+|. +++...... .++.++.+.. +|||-+
T Consensus 263 l~~~~~~~l~~a~~~l~~~~l~i~d~~~--~s~~~i~~~ir~l~~~~~~~~~lIVID~ 318 (444)
T 3bgw_A 263 FASEDWGKLSMAIGEISNSNINIFDKAG--QSVNYIWSKTRQTKRKNPGKRVIVMIDY 318 (444)
T ss_dssp TCCSCHHHHHHHHHHHHTSCEEEECCSS--CBHHHHHHHHHHHHHHSCSSCEEEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCEEEECCCC--CCHHHHHHHHHHHHHHhCCCCeEEEEec
Confidence 7778888888888877788999999874 666554433 3344445666 887765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0038 Score=56.87 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
|..|.|+|+.||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 56899999999999999999987654
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0021 Score=62.22 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
..-+|+|.||+||||||+.+.|+.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345899999999999999999984
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.99 E-value=0.039 Score=54.78 Aligned_cols=114 Identities=17% Similarity=0.159 Sum_probs=0.0
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC-----CCCceEEEEcCCCceEEEEecccccCcCccHHHHHHHhhHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE-----EPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGK 195 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~-----~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~ 195 (555)
.++..+.|.||.|+|||||++.|+..+ .+..--+.++....
T Consensus 65 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l---------------------------------- 110 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL---------------------------------- 110 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT----------------------------------
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh----------------------------------
Q ss_pred HHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhc
Q 008750 196 LERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275 (555)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~ 275 (555)
...+.|...+++.=.-..+
T Consensus 111 -------------------------------------------------------------~~~~~g~~~~~~~~~~~~~ 129 (309)
T 3syl_A 111 -------------------------------------------------------------VGQYIGHTAPKTKEVLKRA 129 (309)
T ss_dssp -------------------------------------------------------------CCSSTTCHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------hhhcccccHHHHHHHHHhc
Q ss_pred cCCCEEEEcCCCCCC--------CHHHHHHHHHHHcCC--CceEEEEec----------CHHHHHhhcceeEEecC
Q 008750 276 QDPDLLLLDEPTNHL--------DLDTIEWLEGYLGKQ--DVPMVIISH----------DRAFLDQLCTKIVETEM 331 (555)
Q Consensus 276 ~~p~lLlLDEPTs~L--------D~~~~~~l~~~l~~~--~~tvIiiSH----------d~~~l~~~~dri~~l~~ 331 (555)
++.+|++||--.-. +......|.+.+... +..+|++++ +..+..+ ++.++.+..
T Consensus 130 -~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R-~~~~i~~~~ 203 (309)
T 3syl_A 130 -MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSR-IAHHIEFPD 203 (309)
T ss_dssp -TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHHHHHHHSTTHHHH-EEEEEEECC
T ss_pred -CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHHHHHhhCHHHHHh-CCeEEEcCC
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.99 E-value=0.003 Score=61.76 Aligned_cols=23 Identities=26% Similarity=0.307 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|+|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998753
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.98 E-value=0.02 Score=53.46 Aligned_cols=53 Identities=13% Similarity=0.182 Sum_probs=39.5
Q ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCH----------HHHHhhcceeEEec
Q 008750 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR----------AFLDQLCTKIVETE 330 (555)
Q Consensus 276 ~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~----------~~l~~~~dri~~l~ 330 (555)
.+.+++++||.-- +|+...+.+..+.. .+.+||+..+|. ..+..+||.|..|.
T Consensus 80 ~~~dvViIDEaqf-l~~~~v~~l~~l~~-~~~~Vi~~Gl~~df~~~~F~~~~~L~~~AD~V~el~ 142 (191)
T 1xx6_A 80 EDTEVIAIDEVQF-FDDEIVEIVNKIAE-SGRRVICAGLDMDFRGKPFGPIPELMAIAEFVDKIQ 142 (191)
T ss_dssp TTCSEEEECSGGG-SCTHHHHHHHHHHH-TTCEEEEEECSBCTTSCBCTTHHHHHHHCSEEEECC
T ss_pred ccCCEEEEECCCC-CCHHHHHHHHHHHh-CCCEEEEEecccccccCcCccHHHHHHHcccEEeee
Confidence 3579999999644 88776666655444 489999998864 45557899998875
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=58.10 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999999854
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0031 Score=57.53 Aligned_cols=23 Identities=30% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998654
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0041 Score=57.10 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
|-.|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~ 26 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDN 26 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 678999999999999999999764
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0011 Score=62.29 Aligned_cols=25 Identities=32% Similarity=0.551 Sum_probs=22.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
+++|+|++|||||||++.|+..+.+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999987754
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0038 Score=56.14 Aligned_cols=19 Identities=21% Similarity=0.536 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRII 143 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i 143 (555)
+++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0011 Score=62.26 Aligned_cols=26 Identities=35% Similarity=0.480 Sum_probs=22.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
.|+|+|++||||||+++.|+..+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999998876543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.91 E-value=0.004 Score=55.97 Aligned_cols=19 Identities=42% Similarity=0.572 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 008750 452 KTAIIGPNGCGKSTLLKLI 470 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L 470 (555)
.|+|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0041 Score=57.76 Aligned_cols=23 Identities=43% Similarity=0.439 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|+.||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 68999999999999999998743
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0041 Score=58.84 Aligned_cols=23 Identities=35% Similarity=0.355 Sum_probs=21.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHc
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
+-+++|+|++||||||++++|+.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999997
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0034 Score=57.83 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.8
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
..+..|.|+|+.||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35778999999999999999999754
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0038 Score=61.03 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++|+|++|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0062 Score=62.74 Aligned_cols=36 Identities=33% Similarity=0.481 Sum_probs=29.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC-----------CCCCceEEEECC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL-----------EKPRGGEVLLGE 485 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~-----------~~p~~G~v~~~~ 485 (555)
|-+|+|+|.+|+|||||++.|+|. ..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 568999999999999999999983 356677777654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0051 Score=56.40 Aligned_cols=26 Identities=31% Similarity=0.344 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+..+.|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998643
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0042 Score=61.14 Aligned_cols=24 Identities=29% Similarity=0.646 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|+|+|++|||||||++.|+|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 699999999999999999999754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0043 Score=61.05 Aligned_cols=45 Identities=20% Similarity=0.138 Sum_probs=32.8
Q ss_pred CCCCCCHHHHHHHHHHH----cCCCceEEEEecCHHHHHhhcceeEEec
Q 008750 286 PTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLDQLCTKIVETE 330 (555)
Q Consensus 286 PTs~LD~~~~~~l~~~l----~~~~~tvIiiSHd~~~l~~~~dri~~l~ 330 (555)
|||+++......+.+.+ .....+..+.+|....+...++++...-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l~~~~ 192 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHISELL 192 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHHHHHH
Confidence 99999988877666654 3344555667888888888888876543
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0048 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.270 Sum_probs=24.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+|-.|+|+|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999999876
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.75 E-value=0.0047 Score=57.38 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=21.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.+++|+|++||||||+.+.|+..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 47999999999999999999975
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0022 Score=67.71 Aligned_cols=35 Identities=29% Similarity=0.255 Sum_probs=30.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
++.+|+++|+|||||||++..|++.+.+..+.|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 57899999999999999999999988877666654
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.006 Score=56.77 Aligned_cols=26 Identities=31% Similarity=0.376 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0055 Score=55.61 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
++.|+|++||||||+.+.|+.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 689999999999999999986
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0051 Score=57.34 Aligned_cols=21 Identities=52% Similarity=0.771 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
|.|+||+|||||||++.|...
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~ 24 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAE 24 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0048 Score=56.79 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.7
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998643
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.69 E-value=0.0052 Score=56.21 Aligned_cols=26 Identities=31% Similarity=0.302 Sum_probs=22.8
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
..+..+.|+|++||||||+.+.|+-.
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASK 34 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999843
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.006 Score=55.91 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=21.7
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.+..|.|+|+.||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999754
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.68 E-value=0.0057 Score=55.53 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G 472 (555)
..|.|+|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0053 Score=57.00 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
..+|+|+|+.||||||+.+.|+..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 347999999999999999999875
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0056 Score=57.04 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 555 | ||||
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 2e-36 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-18 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 8e-34 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 6e-22 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 4e-32 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 8e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 8e-31 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-18 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-30 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 3e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 3e-30 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 9e-18 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-29 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-17 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-28 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 4e-20 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-28 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 5e-20 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-27 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-19 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-27 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 4e-18 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-26 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-21 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 7e-25 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 9e-21 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 7e-25 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-24 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-16 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-23 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-19 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-23 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 6e-16 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 7e-22 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-16 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-22 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 4e-18 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 6e-15 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-13 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 6e-12 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 8e-05 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-10 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 6e-07 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 9e-04 |
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 133 bits (337), Expect = 2e-36
Identities = 39/233 (16%), Positives = 83/233 (35%), Gaps = 19/233 (8%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
++ ENI K + L V+ V KG+ ++G NG+GK+T + +I G + D G V
Sbjct: 5 LRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFE 64
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLL 217
++ + + F+ + + + L
Sbjct: 65 NKDITNKE--------PAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLF 116
Query: 218 DEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQD 277
+ + + + K K++ L + DR S G + +G+ L+ +
Sbjct: 117 YKKWIPKEEEMV-------EKAFKILEFLKL-SHLYDRKAGELSGGQMKLVEIGRALMTN 168
Query: 278 PDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTKIV 327
P ++++DEP + + + L + + +II H + +
Sbjct: 169 PKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLY 221
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 81.9 bits (202), Expect = 4e-18
Identities = 33/153 (21%), Positives = 58/153 (37%), Gaps = 29/153 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
++ +N+ + + + ++++ +G+ T IIGPNG GKSTL+ +I G K G V
Sbjct: 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 483 LGEHNVLPNYFEQN---------QAEALDLDKTVLETVAEAA------------------ 515
++ + Q + TVLE +
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGG 547
E+ ++ +L + DRK LSGG
Sbjct: 123 KEEEMVEKAFKILEFLKLS-HLYDRKAGELSGG 154
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 126 bits (318), Expect = 8e-34
Identities = 56/249 (22%), Positives = 101/249 (40%), Gaps = 52/249 (20%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
VKLEN++K + T + + +K GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ I+ + Q + V TV E AF +++ K E ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYE--NIAFPLKIKKFPKDEIDKRVRW--- 119
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ + + +R A S G + R
Sbjct: 120 --------AAELLQI---------------------------EELLNRYPAQLSGGQRQR 144
Query: 268 MSLGKILLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLC 323
+++ + ++ +PD+LL+DEP ++LD + ++ K V + ++HD+ +
Sbjct: 145 VAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204
Query: 324 TKIVETEMG 332
+I G
Sbjct: 205 DRIAVMNRG 213
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 92.9 bits (231), Expect = 6e-22
Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
V ++NL + + N+ NLTI+ GE ++GP+GCGK+T L++I GLE+P G +
Sbjct: 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 483 LG--EHNVLPNYFEQ----NQAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRC 530
G + LP Q+ A+ TV E +A + + ++
Sbjct: 65 FGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL 124
Query: 531 NFKADMLDRKVSLLSGGEK 549
++L+R + LSGG++
Sbjct: 125 QI-EELLNRYPAQLSGGQR 142
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 122 bits (307), Expect = 4e-32
Identities = 50/240 (20%), Positives = 106/240 (44%), Gaps = 22/240 (9%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKA 157
+ + ++ K Y G VLK V+ + + G+ + ++G +G+GK+T LR I E+P G +I
Sbjct: 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVN 62
Query: 158 KSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRL- 216
N +++ R + A K ++ + R+ + +L +
Sbjct: 63 GQN-----------INLVRDKDGQLKVADKNQLRLLRT--RLTMVFQ----HFNLWSHMT 105
Query: 217 -LDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
L+ + ++ + K + ++G + S G Q R+S+ + L
Sbjct: 106 VLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALA 165
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIVETEMG 332
+PD+LL DEPT+ LD + + + + ++ MV+++H+ F + + ++ G
Sbjct: 166 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 84.1 bits (208), Expect = 8e-19
Identities = 34/155 (21%), Positives = 55/155 (35%), Gaps = 28/155 (18%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ + + +L Y + +L G+ +IIG +G GKST L+ I LEKP G ++
Sbjct: 1 NKLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 483 LGEHNVLPNYFEQN---------------------QAEALDLDKTVLETVAEAA------ 515
+ N+ + Q L TVLE V EA
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGL 120
Query: 516 -EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + L + + LSGG++
Sbjct: 121 SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQ 155
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 118 bits (296), Expect = 8e-31
Identities = 55/241 (22%), Positives = 108/241 (44%), Gaps = 30/241 (12%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+GV+L ++ K + VT +++++ EVK GE + L+G +G GKTT LR+IAG EEP G +
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI- 60
Query: 156 KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGR 215
+ ++ ++ ++ + + K + +S +
Sbjct: 61 ---------------------YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVY 99
Query: 216 LLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILL 275
+ K + V +D +V ++ LG + +R S G + R++LG+ ++
Sbjct: 100 ---DNIAFPLKLRKVPRQEIDQRVREVAELLGL-TELLNRKPRELSGGQRQRVALGRAIV 155
Query: 276 QDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTKIVETEM 331
+ P + L+DEP ++LD + L K V + ++HD+ + +I
Sbjct: 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNR 215
Query: 332 G 332
G
Sbjct: 216 G 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 82.3 bits (203), Expect = 3e-18
Identities = 33/145 (22%), Positives = 68/145 (46%), Gaps = 19/145 (13%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ V + ++ + + +L ++ GE ++GP+GCGK+T L++I GLE+P G++
Sbjct: 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 483 LGEHNVL------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD------IK 524
+G+ V + Q+ AL TV + +A + ++ ++
Sbjct: 62 IGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVR 121
Query: 525 GLLGRCNFKADMLDRKVSLLSGGEK 549
+ ++L+RK LSGG++
Sbjct: 122 EVAELLGL-TELLNRKPRELSGGQR 145
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 116 bits (292), Expect = 2e-30
Identities = 53/242 (21%), Positives = 100/242 (41%), Gaps = 52/242 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V ++++ K +LK +++E+++GE GL+G NGAGKTT LRII+ +P SG V
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 156 -------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVD 208
+ I++L +E + E +AG +E V+
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYL-------RFVAGFYASSSSEIEEMVE 115
Query: 209 DMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRM 268
R + L + V+++S G ++
Sbjct: 116 ------RATEIAGL---------------------------GEKIKDRVSTYSKGMVRKL 142
Query: 269 SLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCTK 325
+ + L+ +P L +LDEPT+ LD+ + ++ + +++ SH+ ++ LC +
Sbjct: 143 LIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDR 202
Query: 326 IV 327
I
Sbjct: 203 IA 204
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 82.0 bits (202), Expect = 3e-18
Identities = 31/138 (22%), Positives = 52/138 (37%), Gaps = 14/138 (10%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V +K+L + + + IE GE +IGPNG GK+T L++I L KP G V +
Sbjct: 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVF 62
Query: 485 EHNVLPNYFEQN-------QAEALDLDKTVLETVAEAAEDWRIDD------IKGLLGRCN 531
NV+ E + + +E + A + ++
Sbjct: 63 GKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAG 122
Query: 532 FKADMLDRKVSLLSGGEK 549
+ + +VS S G
Sbjct: 123 L-GEKIKDRVSTYSKGMV 139
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 116 bits (292), Expect = 3e-30
Identities = 45/243 (18%), Positives = 90/243 (37%), Gaps = 54/243 (22%)
Query: 99 KLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIK-- 156
+++++ Y + +K + +V +G+ V L+G NGAGKTT L IAG G +I
Sbjct: 8 EVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNG 67
Query: 157 ---------AKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
+ M IA + + + TV E M E +++ LE
Sbjct: 68 QDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG----AYNRKDKEGIKRDLE--- 120
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
+ F L+ + +L + S G Q
Sbjct: 121 -------WIFSLFPRLKERL--------------------------KQLGGTLSGGEQQM 147
Query: 268 MSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRAFLDQLCT 324
+++G+ L+ P LL++DEP+ L + + + ++ ++++ + ++
Sbjct: 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAH 207
Query: 325 KIV 327
Sbjct: 208 YGY 210
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 80.7 bits (199), Expect = 9e-18
Identities = 30/143 (20%), Positives = 56/143 (39%), Gaps = 20/143 (13%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ +++L Y +L + RG+ +IG NG GK+T L I GL + + G+++
Sbjct: 6 VLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIF 65
Query: 484 GEHNVLPNYFEQ---------NQAEALDLDKTVLETVA--------EAAEDWRIDDIKGL 526
++ + + + TV E + + ++ I L
Sbjct: 66 NGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSL 125
Query: 527 LGRCNFKADMLDRKVSLLSGGEK 549
R + L + LSGGE+
Sbjct: 126 FPR---LKERLKQLGGTLSGGEQ 145
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 113 bits (285), Expect = 2e-29
Identities = 52/257 (20%), Positives = 101/257 (39%), Gaps = 59/257 (22%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL+N++K+YK + LK+V +K+GE V ++G +G+GK+T L II ++P G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 154 V--------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERV 199
V + KI F+ Q+F + T E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVE---------------- 105
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
L+ + A++ + + + + +
Sbjct: 106 --------------------LPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ 145
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHD 315
S G Q R+++ + L +P ++L D+PT LD T ++ L+ + +V+++HD
Sbjct: 146 LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHD 205
Query: 316 RAFLDQLCTKIVETEMG 332
+ +I+ + G
Sbjct: 206 INVA-RFGERIIYLKDG 221
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 79.5 bits (196), Expect = 2e-17
Identities = 39/150 (26%), Positives = 57/150 (38%), Gaps = 25/150 (16%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ Y+ A NL I+ GE +I+GP+G GKST+L +I L+KP GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 481 VLLGEHNV-------LPNYFEQN-----QAEALDLDKTVLETVAEAAE---------DWR 519
V + L Q L T LE V + R
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 520 IDDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
L + + K + LSGG++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQ 151
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 112 bits (282), Expect = 1e-28
Identities = 52/265 (19%), Positives = 104/265 (39%), Gaps = 44/265 (16%)
Query: 66 VESLFSSSADEFENKKYSNKQSNTGASSISSGVKLENISKSYKGVTVLKDVTWEVKKGEK 125
+E++ + + F +QSN S + G VLK++ ++KGE
Sbjct: 5 MENVTAFWEEGFGELLEKVQQSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEM 64
Query: 126 VGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRTVREEFMSA 185
+ + G G+GKT+ L +I G+ E G + K + +++F SQ + M T++E +
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGII---KHSGRVSFCSQFSWI-MPGTIKENII-- 118
Query: 186 FKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245
++ R + +++ D+ + + + +
Sbjct: 119 ----FGVSYDEYRYKSVVKACQLQQDITKF----------------AEQDNTVLGEGGVT 158
Query: 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWL---EGYL 302
L S G + R+SL + + +D DL LLD P +LD+ T E +
Sbjct: 159 L--------------SGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCK 204
Query: 303 GKQDVPMVIISHDRAFLDQLCTKIV 327
+ ++++ L + KI+
Sbjct: 205 LMANKTRILVTSKMEHL-RKADKIL 228
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 88.4 bits (219), Expect = 4e-20
Identities = 34/133 (25%), Positives = 56/133 (42%), Gaps = 15/133 (11%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V+ +L L NL IE+GE AI G G GK++LL LI+G + G +
Sbjct: 39 VSFSHLCLVGNPVL--KNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHS 96
Query: 485 --------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
++P ++N + D+ ++V +A + DI + N +
Sbjct: 97 GRVSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQ--QDITKFAEQDN---TV 151
Query: 537 LDRKVSLLSGGEK 549
L LSGG++
Sbjct: 152 LGEGGVTLSGGQR 164
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 110 bits (275), Expect = 2e-28
Identities = 49/234 (20%), Positives = 92/234 (39%), Gaps = 53/234 (22%)
Query: 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
S +++ ++S Y VL+ +T ++KG V G NG GKTT L+ I+ +P G +I
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 156 -----KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDM 210
K KI FL +E V +V E+++ A + + ALE
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISV-EDYLKAVASLYGVKVNKNEIMDALE------ 112
Query: 211 DLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSL 270
++L D + + S G R+ L
Sbjct: 113 --------SVEVL----------------------------DLKKKLGELSQGTIRRVQL 136
Query: 271 GKILLQDPDLLLLDEPTNHLDLDT----IEWLEGYLGKQDVPMVIISHDRAFLD 320
LL + ++ +LD+P +D D+ ++ + L ++ + ++ + ++ D
Sbjct: 137 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCD 190
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 86.1 bits (213), Expect = 5e-20
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 6/131 (4%)
Query: 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
S + I++L GY D+ + R +TIE+G GPNG GK+TLLK I KP GE++
Sbjct: 1 SKLEIRDLSVGY-DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 59
Query: 483 LG---EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADMLD- 538
V F + + +V + + A + + K + ++LD
Sbjct: 60 YNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDL 119
Query: 539 -RKVSLLSGGE 548
+K+ LS G
Sbjct: 120 KKKLGELSQGT 130
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 108 bits (272), Expect = 1e-27
Identities = 57/247 (23%), Positives = 101/247 (40%), Gaps = 52/247 (21%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
V+L+N++K++ V V KD+ ++ +GE V VG +G GK+T LR+IAG E SG++
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ + + Q + + +V E K + A K Q+ +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLK--LAGAKKEVINQRVNQ----- 113
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L A DR + S G + R++
Sbjct: 114 ------VAEVLQL---------------------------AHLLDRKPKALSGGQRQRVA 140
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY----LGKQDVPMVIISHDRAFLDQLCTK 325
+G+ L+ +P + LLDEP ++LD + + M+ ++HD+ L K
Sbjct: 141 IGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200
Query: 326 IVETEMG 332
IV + G
Sbjct: 201 IVVLDAG 207
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 85.0 bits (210), Expect = 2e-19
Identities = 38/137 (27%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484
V ++N+ + + ++ NL I GE +GP+GCGKSTLL++I GLE G++ +G
Sbjct: 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIG 60
Query: 485 EHNVL------PNYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNF 532
E + Q+ AL +V E ++ + + + +
Sbjct: 61 EKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQL 120
Query: 533 KADMLDRKVSLLSGGEK 549
A +LDRK LSGG++
Sbjct: 121 -AHLLDRKPKALSGGQR 136
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 107 bits (269), Expect = 4e-27
Identities = 56/258 (21%), Positives = 103/258 (39%), Gaps = 65/258 (25%)
Query: 98 VKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+KL NI+K + + L +V+ V G+ G++G +GAGK+T +R + E P G+
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 154 VI-------------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAG--KLER 198
V+ K+ +I + Q F + SRTV +E+ K E
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVA----LPLELDNTPKDEV 117
Query: 199 VQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVA 258
++ E LL L D D +
Sbjct: 118 KRRVTE-----------LLSLVGL---------------------------GDKHDSYPS 139
Query: 259 SFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLD---LDTIEWLEGYLGKQ-DVPMVIISH 314
+ S G + R+++ + L +P +LL DE T+ LD +I L + ++ + +++I+H
Sbjct: 140 NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITH 199
Query: 315 DRAFLDQLCTKIVETEMG 332
+ + ++C + G
Sbjct: 200 EMDVVKRICDCVAVISNG 217
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 81.9 bits (202), Expect = 4e-18
Identities = 36/146 (24%), Positives = 55/146 (37%), Gaps = 22/146 (15%)
Query: 425 VTIKNLEFGYEDRLLFNRA----NLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ + N+ + +A +L + G+ +IG +G GKSTL++ + LE+P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 481 VLLGEHNVLP-----------NYFEQNQAEALDLDKTVLETVAEAAE------DWRIDDI 523
VL+ + Q L +TV VA E D +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
LL D D S LSGG+K
Sbjct: 122 TELLSLVGL-GDKHDSYPSNLSGGQK 146
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 106 bits (265), Expect = 2e-26
Identities = 57/248 (22%), Positives = 99/248 (39%), Gaps = 49/248 (19%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV- 154
+ ++++S Y +LKD+ ++KGE V VG++G GK+T + +I + SG +
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 155 --------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESA 206
S L Q+ + S TV+E + + E V +A + A
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATD-----EEVVEAAKMA 131
Query: 207 VDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQM 266
D L D +V S G +
Sbjct: 132 --------NAHDFIMNLP--------QGYDTEV--------------GERGVKLSGGQKQ 161
Query: 267 RMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCT 324
R+S+ +I L +P +L+LDE T+ LDL++ ++ L +D +I++H + +
Sbjct: 162 RLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THAD 220
Query: 325 KIVETEMG 332
KIV E G
Sbjct: 221 KIVVIENG 228
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 89.9 bits (223), Expect = 8e-21
Identities = 36/144 (25%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ I ++ F Y D + NL+IE+GE A +G +G GKSTL+ LI G++L
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 483 LGEHNV-------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFK-- 533
+ HN+ L N Q + + TV E + +++ N
Sbjct: 77 IDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDF 136
Query: 534 --------ADMLDRKVSLLSGGEK 549
+ + LSGG+K
Sbjct: 137 IMNLPQGYDTEVGERGVKLSGGQK 160
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 101 bits (253), Expect = 7e-25
Identities = 36/241 (14%), Positives = 87/241 (36%), Gaps = 35/241 (14%)
Query: 98 VKLENISKSY-KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI- 155
+ ++ +Y +L+D+++E + + G +G GK+T ++ +P +G +
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
+ N+ + ++ +E + + + + L +D
Sbjct: 62 DGQPIDNISLENWRS--QIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
+ + D L + S G + R+++ +
Sbjct: 120 SFVENMPDQLNTEV--------------------------GERGVKISGGQRQRLAIARA 153
Query: 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVETEM 331
L++P +L+LDE T LD ++ ++ L + ++I+H + + KI E
Sbjct: 154 FLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTI-VDADKIYFIEK 212
Query: 332 G 332
G
Sbjct: 213 G 213
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.5 bits (222), Expect = 9e-21
Identities = 23/148 (15%), Positives = 56/148 (37%), Gaps = 25/148 (16%)
Query: 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+++ ++++F Y+D + + + A GP+G GKST+ L+ +P GE+
Sbjct: 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 483 LG---------------------EHNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRID 521
+ + ++ +N L+ D T + +
Sbjct: 61 IDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARS 120
Query: 522 DIKGLLGRCNFKADMLDRKVSLLSGGEK 549
++ + + N + + +SGG++
Sbjct: 121 FVENMPDQLN---TEVGERGVKISGGQR 145
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 101 bits (253), Expect = 7e-25
Identities = 48/249 (19%), Positives = 105/249 (42%), Gaps = 50/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
++ N++ +Y G V L+++ ++ G+ V LVG +G+GK+T +I + D G+++
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
A ++A +SQ + + +E E++++A
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSR-----EQIEEAARM 128
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A +D + + + LD + S G +
Sbjct: 129 A--------YAMDFINKMD--------NGLDTII--------------GENGVLLSGGQR 158
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + LL+D +L+LDE T+ LD ++ ++ L + ++ ++I+H + + +
Sbjct: 159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQA 217
Query: 324 TKIVETEMG 332
+IV E G
Sbjct: 218 DEIVVVEDG 226
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 76.8 bits (189), Expect = 2e-16
Identities = 34/147 (23%), Positives = 54/147 (36%), Gaps = 24/147 (16%)
Query: 425 VTIKNLEFGYEDR--LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+ +N+ F Y R NL I G+ A++G +G GKST+ LI G +L
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 483 LGEHNV--------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDD 522
+ H++ L N N ++ E + EAA D
Sbjct: 74 MDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMD 133
Query: 523 IKGLLGRCNFKADMLDRKVSLLSGGEK 549
+ N ++ LLSGG++
Sbjct: 134 FINKMD--NGLDTIIGENGVLLSGGQR 158
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 98.5 bits (245), Expect = 5e-24
Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 70/250 (28%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
++L+++++S T L ++ EV+ GE + LVG NGAGK+T L +AG G++
Sbjct: 4 MQLQDVAES----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFA 58
Query: 156 --------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAV 207
K + A+LSQ+ + V + E +
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLT----LHQHDKTRTELLNDVAG--- 111
Query: 208 DDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMR 267
A+ LD D R S G R
Sbjct: 112 ---------------------ALALD-----------------DKLGRSTNQLSGGEWQR 133
Query: 268 MSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGY---LGKQDVPMVIISHDRA 317
+ L ++LQ LLLLDEP N LD+ L+ L +Q + +V+ SHD
Sbjct: 134 VRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLN 193
Query: 318 FLDQLCTKIV 327
+ +
Sbjct: 194 HTLRHAHRAW 203
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 77.3 bits (190), Expect = 1e-16
Identities = 27/133 (20%), Positives = 49/133 (36%), Gaps = 11/133 (8%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
V+ ++++ + + GE ++GPNG GKSTLL + G+ +G
Sbjct: 3 VMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGKGSIQFA 58
Query: 484 GE-------HNVLPNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKADM 536
G+ + + +Q + V + D ++ + D
Sbjct: 59 GQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK 118
Query: 537 LDRKVSLLSGGEK 549
L R + LSGGE
Sbjct: 119 LGRSTNQLSGGEW 131
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.7 bits (243), Expect = 1e-23
Identities = 46/252 (18%), Positives = 101/252 (40%), Gaps = 53/252 (21%)
Query: 98 VKLENISKSY---KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154
V+ +++S +Y V VL+ +T+ ++ GE LVG NG+GK+T ++ +P G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 155 I----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALE 204
+ + ++A + QE +V R+++E ++ + K+
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQV-FGRSLQENIAYGLTQKPTMEEITAAAVKSGA 130
Query: 205 SAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGW 264
+ L +D + D + S G
Sbjct: 131 -----HSFISGLPQGYD-----------------------------TEVDEAGSQLSGGQ 156
Query: 265 QMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL----GKQDVPMVIISHDRAFLD 320
+ ++L + L++ P +L+LD+ T+ LD ++ +E L + +++I+ + +
Sbjct: 157 RQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV- 215
Query: 321 QLCTKIVETEMG 332
+ I+ E G
Sbjct: 216 EQADHILFLEGG 227
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 86.5 bits (214), Expect = 1e-19
Identities = 41/149 (27%), Positives = 63/149 (42%), Gaps = 27/149 (18%)
Query: 425 VTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEV 481
V +++ F Y +R L+ T+ GE TA++GPNG GKST+ L+ L +P GG++
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 482 LLGEHNV---------------------LPNYFEQNQAEALDLDKTVLETVAEAAEDWRI 520
LL + ++N A L T+ E A A +
Sbjct: 72 LLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAH 131
Query: 521 DDIKGLLGRCNFKADMLDRKVSLLSGGEK 549
I GL + +D S LSGG++
Sbjct: 132 SFISGLPQGYD---TEVDEAGSQLSGGQR 157
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 97.5 bits (242), Expect = 1e-23
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 61/257 (23%)
Query: 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGN 153
+ ++N+SK +K V L +V ++ GE+ G++G +GAGKTT +RIIAG + P +G
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 154 V-------------IKAKSNMKIAFLSQEFEVSMSRTVREEFMSAFK-EEMEIAGKLERV 199
+ I + KI + Q + + + T E +M +RV
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 200 QKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVAS 259
++ + +D+ L +
Sbjct: 122 EEVAK----ILDIHHVL-------------------------------------NHFPRE 140
Query: 260 FSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315
S Q R++L + L++DP LLLLDEP ++LD + + + V ++++SHD
Sbjct: 141 LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
Query: 316 RAFLDQLCTKIVETEMG 332
A + + ++ G
Sbjct: 201 PADIFAIADRVGVLVKG 217
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 75.1 bits (184), Expect = 6e-16
Identities = 33/146 (22%), Positives = 60/146 (41%), Gaps = 20/146 (13%)
Query: 423 SVVTIKNL--EFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480
+ +KN+ F + + N+ IE GE+ I+GP+G GK+T +++I GL+ P GE
Sbjct: 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 481 VLLGEHNVLPNYFEQ-----------NQAEALDLDKTVLETVAEAAE------DWRIDDI 523
+ + V N Q AL + T E +A + +
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRV 121
Query: 524 KGLLGRCNFKADMLDRKVSLLSGGEK 549
+ + + +L+ LSG ++
Sbjct: 122 EEVAKILDIH-HVLNHFPRELSGAQQ 146
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 92.7 bits (230), Expect = 7e-22
Identities = 45/249 (18%), Positives = 97/249 (38%), Gaps = 51/249 (20%)
Query: 98 VKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
+ NI YK +L ++ +K+GE +G+VG +G+GK+T ++I P++G V+
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 156 ----------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALES 205
++ + Q+ ++R++ + A K+ K
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNV-LLNRSIIDNISLA--NPGMSVEKVIYAAKLAG- 117
Query: 206 AVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQ 265
A D + + + A S G +
Sbjct: 118 AHDFISELREGYNTIV--------------------------------GEQGAGLSGGQR 145
Query: 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLC 323
R+++ + L+ +P +L+ DE T+ LD ++ + + K + ++II+H + + +
Sbjct: 146 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNA 204
Query: 324 TKIVETEMG 332
+I+ E G
Sbjct: 205 DRIIVMEKG 213
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 76.9 bits (189), Expect = 2e-16
Identities = 31/145 (21%), Positives = 63/145 (43%), Gaps = 21/145 (14%)
Query: 425 VTIKNLEFGY--EDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482
+T +N+ F Y + ++ + NL+I++GE I+G +G GKSTL KLI P G+VL
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 483 LGEHNVL-----------------PNYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKG 525
+ H++ ++ + + L + +V + ++
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGM-SVEKVIYAAKLAGAHD 120
Query: 526 LLGRCNFKADML-DRKVSLLSGGEK 549
+ + + + + LSGG++
Sbjct: 121 FISELREGYNTIVGEQGAGLSGGQR 145
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 92.0 bits (228), Expect = 7e-22
Identities = 57/247 (23%), Positives = 99/247 (40%), Gaps = 56/247 (22%)
Query: 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI-- 155
+++E++S+ +K L +++ +V+ GE ++G GAGKT L +IAG PDSG ++
Sbjct: 2 IEIESLSRKWKNF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLD 60
Query: 156 ------KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDD 209
+ IAF+ Q + + V++ F M+ +RV D
Sbjct: 61 GKDVTDLSPEKHDIAFVYQNYSLFPHMNVKK--NLEFGMRMKKIKDPKRVLDTAR----D 114
Query: 210 MDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMS 269
+ + L DR + S G Q R++
Sbjct: 115 LKIEHLL-------------------------------------DRNPLTLSGGEQQRVA 137
Query: 270 LGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHDRAFLDQLCTK 325
L + L+ +P +LLLDEP + LD T E L + ++ I+HD+ + +
Sbjct: 138 LARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADR 197
Query: 326 IVETEMG 332
I G
Sbjct: 198 IAVVMDG 204
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 81.3 bits (200), Expect = 4e-18
Identities = 36/135 (26%), Positives = 60/135 (44%), Gaps = 11/135 (8%)
Query: 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483
++ I++L +++ L + +L +E GE I+GP G GK+ L+LI G P G +LL
Sbjct: 1 MIEIESLSRKWKNFSL-DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILL 59
Query: 484 GEHNVLPNYFEQ------NQAEALDLDKTVLETVAEAAEDWRIDD---IKGLLGRCNFKA 534
+V E+ Q +L V + + +I D + +
Sbjct: 60 DGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE- 118
Query: 535 DMLDRKVSLLSGGEK 549
+LDR LSGGE+
Sbjct: 119 HLLDRNPLTLSGGEQ 133
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 6e-15
Identities = 39/130 (30%), Positives = 56/130 (43%), Gaps = 10/130 (7%)
Query: 430 LEFGYEDRLLFNRANLTIE-RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV 488
L+ E RL R N+ E + ++GP G GKS L+LI G+ KP GEV L ++
Sbjct: 3 LKVRAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 489 LP------NYFEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGL---LGRCNFKADMLDR 539
P Q AL +V +A + + + A +LDR
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDR 122
Query: 540 KVSLLSGGEK 549
K + LSGGE+
Sbjct: 123 KPARLSGGER 132
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.4 bits (177), Expect = 6e-15
Identities = 52/243 (21%), Positives = 88/243 (36%), Gaps = 57/243 (23%)
Query: 102 NISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI------ 155
K + +V +E+ + L+G GAGK+ L +IAG +PD G V
Sbjct: 6 RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADI 62
Query: 156 --KAKSNMKIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLM 213
I F+ Q++ + +V + +E + RV++ E + L+
Sbjct: 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLR-NVERVERDRRVREMAE-KLGIAHLL 120
Query: 214 GRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKI 273
DR A S G + R++L +
Sbjct: 121 ----------------------------------------DRKPARLSGGERQRVALARA 140
Query: 274 LLQDPDLLLLDEPTNHLD----LDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVET 329
L+ P LLLLDEP + +D +E L + DVP++ ++HD L ++
Sbjct: 141 LVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVM 200
Query: 330 EMG 332
G
Sbjct: 201 LNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 57.7 bits (138), Expect = 2e-10
Identities = 12/42 (28%), Positives = 15/42 (35%)
Query: 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYF 493
K I G G GK+TL+K I+ R E
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK 43
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 47.7 bits (112), Expect = 6e-07
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155
K+ + G G GKTT ++ I + +
Sbjct: 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFW 32
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 38.4 bits (88), Expect = 9e-04
Identities = 7/81 (8%), Positives = 22/81 (27%), Gaps = 3/81 (3%)
Query: 254 DRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDL--DTIEWLEGYLGKQDVPMVI 311
+ + + + + ++++DE + + + +V +V
Sbjct: 76 NVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVA 135
Query: 312 ISHDRAFLDQLCTKIVETEMG 332
R L +I
Sbjct: 136 TIPIRDVH-PLVKEIRRLPGA 155
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 555 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.95 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.95 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.95 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.95 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.95 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.95 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.95 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.94 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.93 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.93 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.93 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.92 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.92 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.92 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.92 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.92 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.91 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.87 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.86 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.85 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.7 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.65 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.08 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.99 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.78 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.42 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.17 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.88 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.55 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 97.4 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.32 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 97.28 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.12 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.07 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.06 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.94 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.94 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.93 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.92 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.91 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.84 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.81 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.8 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.78 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.77 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.69 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.68 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.67 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.67 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.61 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.59 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.57 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.57 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.56 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.53 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.51 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.51 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.47 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.47 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.47 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 96.42 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.35 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.31 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.29 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.27 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.26 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.26 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.26 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.26 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.24 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.2 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.2 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.19 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.17 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.15 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.15 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.14 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.06 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 96.05 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.97 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.95 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.95 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.93 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.93 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.92 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.9 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.9 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.9 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.89 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.86 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.84 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.84 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.83 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.82 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.82 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.82 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.8 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.8 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.78 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.77 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.77 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.76 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.76 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 95.76 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.75 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.73 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.73 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.71 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.69 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 95.67 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.66 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.66 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.65 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.63 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.62 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.6 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.59 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.57 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.55 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.54 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.53 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.53 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 95.52 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.52 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.51 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.49 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.45 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.45 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.45 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.44 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.4 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.4 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.36 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.36 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.35 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.34 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.34 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.34 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.32 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 95.32 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.3 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.28 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.26 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.25 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.24 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.24 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.22 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.21 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.21 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.19 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 95.19 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.19 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 95.17 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.17 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.14 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 95.12 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.1 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 95.09 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.08 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.07 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.04 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 95.04 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.03 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.99 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.98 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.94 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.93 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.92 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.91 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.89 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.88 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.87 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.86 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.86 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.86 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.84 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.83 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.82 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.82 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.81 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.8 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.79 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.79 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.79 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.78 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.77 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.77 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 94.76 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.76 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.73 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.73 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.72 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.7 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.69 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.67 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 94.62 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 94.62 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.6 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.55 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.55 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 94.52 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.51 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.5 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.48 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.47 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.46 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.45 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.44 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.43 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 94.42 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 94.41 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.41 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.4 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.39 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 94.39 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.38 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 94.38 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.34 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.33 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.32 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 94.25 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.25 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.23 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 94.21 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.2 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.18 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.16 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.15 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.15 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.14 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.13 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.13 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.12 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 94.11 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.11 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 94.11 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 94.07 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.06 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.06 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.04 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 94.03 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.01 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.01 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.0 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.99 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.96 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.96 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.95 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.92 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.9 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.89 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 93.88 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.88 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.82 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.79 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.79 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 93.78 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.76 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.76 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 93.74 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.72 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.71 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.7 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.69 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 93.68 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.68 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 93.66 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.65 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.65 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.6 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.6 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.57 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 93.57 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.56 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 93.56 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 93.55 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.55 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.54 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 93.51 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 93.51 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.48 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 93.48 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.47 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 93.46 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.45 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 93.44 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 93.41 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 93.4 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.35 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 93.34 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 93.34 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.34 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.31 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.29 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 93.27 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.24 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 93.22 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.22 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.21 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.18 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.18 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.16 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 93.16 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.14 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 93.14 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 93.1 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 93.09 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 93.08 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 93.04 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.03 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.03 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 93.01 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.01 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 93.0 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 92.99 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.96 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.94 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.93 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.91 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.89 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 92.89 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.85 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 92.84 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.79 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.77 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.76 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 92.73 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.73 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.7 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 92.69 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 92.69 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 92.61 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 92.59 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 92.59 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.57 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 92.55 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.53 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.5 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.48 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.47 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 92.39 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.39 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 92.37 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.34 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.29 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 92.28 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.21 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.21 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.19 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.19 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.11 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.09 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 92.09 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.06 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.05 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 92.03 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 92.01 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 91.97 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.96 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 91.87 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.86 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 91.81 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 91.68 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 91.54 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 91.51 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 91.48 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 91.35 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 91.24 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.15 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.05 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.04 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.92 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.89 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.86 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.75 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.73 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.56 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.49 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 90.44 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.4 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.4 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.39 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.22 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 90.12 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.9 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 89.81 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.76 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.67 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.67 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.64 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 89.29 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 89.26 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 89.22 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.0 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 88.95 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 88.9 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.87 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.75 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 88.69 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 88.69 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 88.3 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 88.21 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 87.99 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 87.96 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 87.88 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 87.8 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.77 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.71 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 87.61 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.6 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 87.55 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.34 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 87.28 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 87.27 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.26 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.02 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 86.83 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 86.66 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.65 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.65 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 86.52 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 86.4 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 86.07 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.91 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 85.48 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 85.44 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 85.39 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 85.25 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 85.25 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 85.04 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.78 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.63 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 84.46 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.39 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 84.31 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 83.94 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.9 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 83.38 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.15 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 83.13 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 82.86 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 82.26 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 81.75 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.75 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.02 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.91 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 80.81 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 80.23 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-54 Score=419.69 Aligned_cols=208 Identities=27% Similarity=0.420 Sum_probs=153.1
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEecc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQE 169 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q~ 169 (555)
|+++||+|+|++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +||||||+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 6899999999999999999999999999999999999999999999999999999999998653 59999999
Q ss_pred cccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCC
Q 008750 170 FEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFT 249 (555)
Q Consensus 170 ~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~ 249 (555)
+.+++.+||+||+..+... ..+...+.++++.++++.+|+.
T Consensus 81 ~~l~~~~tv~eni~~~~~~---------------------------------------~~~~~~~~~~~v~~~l~~~~l~ 121 (232)
T d2awna2 81 YALYPHLSVAENMSFGLKL---------------------------------------AGAKKEVINQRVNQVAEVLQLA 121 (232)
T ss_dssp CCC------------------------------------------------------------CHHHHHHHHHHHHC---
T ss_pred cccccchhHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHhCCCh
Confidence 9999999999998643210 0123456678899999999997
Q ss_pred ccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcce
Q 008750 250 ADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTK 325 (555)
Q Consensus 250 ~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dr 325 (555)
+..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+++.|+ +.|.|||+||||++++..+|||
T Consensus 122 -~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dr 200 (232)
T d2awna2 122 -HLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADK 200 (232)
T ss_dssp -------------------CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSE
T ss_pred -hhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCE
Confidence 57899999999999999999999999999999999999999999988887664 4699999999999999999999
Q ss_pred eEEecCCeEeeccCChHHHHH
Q 008750 326 IVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 326 i~~l~~G~~~~~~G~y~~~~~ 346 (555)
|++|++|++ +..|+..+.+.
T Consensus 201 i~vm~~G~i-v~~G~~~el~~ 220 (232)
T d2awna2 201 IVVLDAGRV-AQVGKPLELYH 220 (232)
T ss_dssp EEEEETTEE-EEEECHHHHHH
T ss_pred EEEEECCEE-EEEeCHHHHHh
Confidence 999999997 56777766543
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=2.3e-54 Score=420.05 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=181.1
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEe
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLS 167 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~ 167 (555)
..|+++||+|+|++..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.+. +|||||
T Consensus 5 ~~I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~ 84 (239)
T d1v43a3 5 VEVKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVF 84 (239)
T ss_dssp CCEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEE
T ss_pred CeEEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEe
Confidence 349999999999999999999999999999999999999999999999999999999999998643 499999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++++||.||+...... ...+..+.++++.++|+.+|
T Consensus 85 Q~~~l~~~ltv~enl~~~~~~---------------------------------------~~~~~~~~~~~~~~~l~~~~ 125 (239)
T d1v43a3 85 QSYAVWPHMTVYENIAFPLKI---------------------------------------KKFPKDEIDKRVRWAAELLQ 125 (239)
T ss_dssp C------CCCHHHHHHTTCC-----------------------------------------CCCHHHHHHHHHHHHHHTT
T ss_pred echhhcccchHHHHHHHHHHH---------------------------------------cCCCHHHHHHHHHHHHHHcC
Confidence 999999999999998643210 12234456778999999999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLC 323 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~ 323 (555)
+. +..++++.+|||||||||+|||||+.+|+||||||||++||+.++..++++++ +.|.|||+||||++++.++|
T Consensus 126 l~-~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~ 204 (239)
T d1v43a3 126 IE-ELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMG 204 (239)
T ss_dssp CG-GGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHC
T ss_pred Ch-hhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhC
Confidence 96 57899999999999999999999999999999999999999999999888764 35999999999999999999
Q ss_pred ceeEEecCCeEeeccCChHHHHH
Q 008750 324 TKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 324 dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
|||++|++|++ +..|+.++.+.
T Consensus 205 dri~vm~~G~i-v~~G~~~el~~ 226 (239)
T d1v43a3 205 DRIAVMNRGQL-LQIGSPTEVYL 226 (239)
T ss_dssp SEEEEEETTEE-EEEECHHHHHH
T ss_pred CEEEEEECCEE-EEEcCHHHHHh
Confidence 99999999997 56788776643
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.3e-54 Score=417.66 Aligned_cols=209 Identities=29% Similarity=0.446 Sum_probs=185.7
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------------c
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------------M 161 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------------~ 161 (555)
..|+++||+|+||+.++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+ .
T Consensus 2 ~~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r 81 (240)
T d1g2912 2 AGVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDR 81 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGS
T ss_pred CcEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccc
Confidence 35899999999999999999999999999999999999999999999999999999999999853 2
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+||||||++.+++.+||.||+..+.. ....+..+.++++.+
T Consensus 82 ~ig~v~Q~~~L~~~ltV~eni~~~~~---------------------------------------~~~~~~~e~~~~v~~ 122 (240)
T d1g2912 82 DIAMVFQSYALYPHMTVYDNIAFPLK---------------------------------------LRKVPRQEIDQRVRE 122 (240)
T ss_dssp SEEEECSCCCCCTTSCHHHHHHHHHH---------------------------------------HTTCCHHHHHHHHHH
T ss_pred cceecccchhhcchhhhhHhhhhhHH---------------------------------------HcCCCHHHHHHHHHH
Confidence 59999999999999999999864321 012344556788999
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
+++.+|+. +..+++|.+|||||||||+|||||+.+|+||||||||++||+.++..+++.++ +.|.|||+||||++
T Consensus 123 ~l~~~~l~-~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~ 201 (240)
T d1g2912 123 VAELLGLT-ELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQV 201 (240)
T ss_dssp HHHHHTCG-GGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHH
T ss_pred HHHHcCCh-hHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHH
Confidence 99999996 57899999999999999999999999999999999999999999998888764 35999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++..+||||++|++|++ +..|+..+..
T Consensus 202 ~~~~~~drv~vm~~G~i-v~~G~~~el~ 228 (240)
T d1g2912 202 EAMTMGDRIAVMNRGVL-QQVGSPDEVY 228 (240)
T ss_dssp HHHHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999997 4567776654
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.4e-53 Score=410.29 Aligned_cols=204 Identities=27% Similarity=0.388 Sum_probs=180.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc--------eEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------KIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------~ig~v~Q 168 (555)
+|+++||+|+|++ .+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. +||||||
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 4899999999976 589999999999999999999999999999999999999999999998653 5999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++++||.||+..+... . .....+++.++++.+|+
T Consensus 80 ~~~l~~~~tV~enl~~~~~~---------------------------------------~---~~~~~~~~~~~l~~~~l 117 (229)
T d3d31a2 80 NYSLFPHMNVKKNLEFGMRM---------------------------------------K---KIKDPKRVLDTARDLKI 117 (229)
T ss_dssp TCCCCTTSCHHHHHHHHHHH---------------------------------------H---CCCCHHHHHHHHHHTTC
T ss_pred ccccCccccHHHHHHHHHhh---------------------------------------c---cccHHHHHHHHHHHhcc
Confidence 99999999999998643210 0 11224578888999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.+...+.++++ +.|.|||+||||++++.++||
T Consensus 118 ~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~d 196 (229)
T d3d31a2 118 E-HLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMAD 196 (229)
T ss_dssp T-TTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCS
T ss_pred h-hhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCC
Confidence 6 57899999999999999999999999999999999999999999998888763 469999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~ 345 (555)
||++|++|++ ++.|+.++.+
T Consensus 197 rv~vm~~G~i-v~~g~~~el~ 216 (229)
T d3d31a2 197 RIAVVMDGKL-IQVGKPEEIF 216 (229)
T ss_dssp EEEEESSSCE-EEEECHHHHH
T ss_pred EEEEEECCEE-EEEcCHHHHH
Confidence 9999999997 5678877654
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.7e-53 Score=414.20 Aligned_cols=208 Identities=25% Similarity=0.400 Sum_probs=183.9
Q ss_pred cEEEEeEEEEe--CCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-------------
Q 008750 97 GVKLENISKSY--KGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM------------- 161 (555)
Q Consensus 97 ~i~l~nls~~y--~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~------------- 161 (555)
.|+++||+|+| +...+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 48999999999 456899999999999999999999999999999999999999999999998542
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
+||||||++.+++++||+||+..+... ..++..+.++++.+
T Consensus 83 ~ig~vfQ~~~L~p~ltv~eni~~~l~~---------------------------------------~~~~~~~~~~~v~~ 123 (242)
T d1oxxk2 83 KIGMVFQTWALYPNLTAFENIAFPLTN---------------------------------------MKMSKEEIRKRVEE 123 (242)
T ss_dssp CEEEEETTSCCCTTSCHHHHHHGGGTT---------------------------------------SSCCHHHHHHHHHH
T ss_pred cceEEeccccccccccHHHHhhhhhHh---------------------------------------hcCCHHHHHHHHHH
Confidence 599999999999999999999754310 01234456788999
Q ss_pred HhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHH
Q 008750 242 LMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRA 317 (555)
Q Consensus 242 ~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~ 317 (555)
+++.+|+. +..+++|.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.++ +.|.|+|+||||++
T Consensus 124 ~l~~~gL~-~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~ 202 (242)
T d1oxxk2 124 VAKILDIH-HVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPA 202 (242)
T ss_dssp HHHHTTCG-GGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHH
T ss_pred HHhhcChH-hhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 99999995 67899999999999999999999999999999999999999999988888764 35999999999999
Q ss_pred HHHhhcceeEEecCCeEeeccCChHHHH
Q 008750 318 FLDQLCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 318 ~l~~~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
++.++||||++|++|++ +..|+..+..
T Consensus 203 ~~~~~~dri~vm~~G~i-v~~g~~~el~ 229 (242)
T d1oxxk2 203 DIFAIADRVGVLVKGKL-VQVGKPEDLY 229 (242)
T ss_dssp HHHHHCSEEEEEETTEE-EEEECHHHHH
T ss_pred HHHHhCCEEEEEECCEE-EEEcCHHHHH
Confidence 99999999999999997 5667766554
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=3.9e-53 Score=409.96 Aligned_cols=202 Identities=26% Similarity=0.376 Sum_probs=174.8
Q ss_pred cEEEEeEEEEeCC----ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 97 GVKLENISKSYKG----VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~----~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
+|+++||+|+|+. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 5899999999953 2489999999999999999999999999999999999999999999998642
Q ss_pred ---eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHH
Q 008750 162 ---KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAK 238 (555)
Q Consensus 162 ---~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (555)
.||||||++.+++.+||.||+..+... ... ......+...+
T Consensus 81 r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~---------------~~~---------------------~~~~~~~~~~~ 124 (230)
T d1l2ta_ 81 RRDKIGFVFQQFNLIPLLTALENVELPLIF---------------KYR---------------------GAMSGEERRKR 124 (230)
T ss_dssp HHHHEEEECTTCCCCTTSCHHHHHHHHHHT---------------CCS---------------------SCCCHHHHHHH
T ss_pred hcceEEEEecchhhCcCccHHHHHhHHHHH---------------hcc---------------------CCCCHHHHHHH
Confidence 499999999999999999998643210 000 01122344567
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEec
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISH 314 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSH 314 (555)
+.++|+.+|++....+++|.+|||||||||+|||||+.+|+||||||||++||+.++..++++|+ +.|.|||+|||
T Consensus 125 ~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTH 204 (230)
T d1l2ta_ 125 ALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTH 204 (230)
T ss_dssp HHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECS
T ss_pred HHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECC
Confidence 88899999998767899999999999999999999999999999999999999999999888764 46999999999
Q ss_pred CHHHHHhhcceeEEecCCeEe
Q 008750 315 DRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 315 d~~~l~~~~dri~~l~~G~~~ 335 (555)
|++++ ++||||++|++|+++
T Consensus 205 d~~~a-~~~drv~~m~~G~Iv 224 (230)
T d1l2ta_ 205 DINVA-RFGERIIYLKDGEVE 224 (230)
T ss_dssp CHHHH-TTSSEEEEEETTEEE
T ss_pred CHHHH-HhCCEEEEEECCEEE
Confidence 99987 699999999999974
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.5e-53 Score=412.37 Aligned_cols=207 Identities=26% Similarity=0.438 Sum_probs=182.7
Q ss_pred cEEEEeEEEEeCCc----eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------
Q 008750 97 GVKLENISKSYKGV----TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~----~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------- 161 (555)
+|+++||+|+|+.. .||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 58999999999542 589999999999999999999999999999999999999999999998642
Q ss_pred --eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Q 008750 162 --KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKV 239 (555)
Q Consensus 162 --~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (555)
+||||||++.+++.+||+||+..+.. ....+..+..+++
T Consensus 81 rr~ig~VfQ~~~l~~~~tv~eni~~~l~---------------------------------------~~~~~~~~~~~~v 121 (240)
T d3dhwc1 81 RRQIGMIFQHFNLLSSRTVFGNVALPLE---------------------------------------LDNTPKDEVKRRV 121 (240)
T ss_dssp HHHEEECCSSCCCCTTSBHHHHHHHHHH---------------------------------------TTTCCTTHHHHHH
T ss_pred hccccccccccccCCCccHHHHHHHHHH---------------------------------------HcCCCHHHHHHHH
Confidence 49999999999899999999864321 0123455667889
Q ss_pred HHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecC
Q 008750 240 SKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHD 315 (555)
Q Consensus 240 ~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd 315 (555)
.++|+.+||. +..+++|.+|||||||||+|||||+.+|++|||||||++||+.+...+.+.|+ +.|.|||+||||
T Consensus 122 ~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd 200 (240)
T d3dhwc1 122 TELLSLVGLG-DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHE 200 (240)
T ss_dssp HHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSC
T ss_pred HHHHHHcCCc-hhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCC
Confidence 9999999997 56799999999999999999999999999999999999999999998888774 359999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQY 344 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~ 344 (555)
++++..+||||++|++|++ +..|+.++.
T Consensus 201 l~~~~~~~dri~vl~~G~i-v~~G~~~ei 228 (240)
T d3dhwc1 201 MDVVKRICDCVAVISNGEL-IEQDTVSEV 228 (240)
T ss_dssp HHHHHHHCSEEEEEETTEE-EEEEETTTT
T ss_pred HHHHHHhCCEEEEEECCEE-EEECCHHHH
Confidence 9999999999999999997 456665543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3e-52 Score=411.85 Aligned_cols=211 Identities=26% Similarity=0.430 Sum_probs=185.9
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc---------------
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM--------------- 161 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~--------------- 161 (555)
.|+++||+|+|++..+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 2 ~Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~ 81 (258)
T d1b0ua_ 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADK 81 (258)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCH
T ss_pred eEEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccH
Confidence 38999999999999999999999999999999999999999999999999999999999998643
Q ss_pred --------eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcc
Q 008750 162 --------KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLD 233 (555)
Q Consensus 162 --------~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
+||||||++.+++.+||.+|+..+... . ......
T Consensus 82 ~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~----------------~----------------------~~~~~~ 123 (258)
T d1b0ua_ 82 NQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQ----------------V----------------------LGLSKH 123 (258)
T ss_dssp HHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHH----------------T----------------------TCCCHH
T ss_pred hHHHHHhcceEEEEechhhccchhcchhhhhhHHH----------------h----------------------cCCCHH
Confidence 499999999999999999998643100 0 012334
Q ss_pred cHHHHHHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEE
Q 008750 234 TLDAKVSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMV 310 (555)
Q Consensus 234 ~~~~~~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvI 310 (555)
+..+++.++++.+|+.+...+++|.+|||||||||+|||||+.+|+||||||||++||+.+...+.++|+ +.|.|||
T Consensus 124 ~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til 203 (258)
T d1b0ua_ 124 DARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMV 203 (258)
T ss_dssp HHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceE
Confidence 4567788999999998666788999999999999999999999999999999999999999998888764 4689999
Q ss_pred EEecCHHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 311 IISHDRAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 311 iiSHd~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
+||||++++..+||||++|++|++ ++.|+.++.+.
T Consensus 204 ~vtHdl~~~~~~adri~vm~~G~i-v~~g~~~ev~~ 238 (258)
T d1b0ua_ 204 VVTHEMGFARHVSSHVIFLHQGKI-EEEGDPEQVFG 238 (258)
T ss_dssp EECSCHHHHHHHCSEEEEEETTEE-EEEECHHHHHH
T ss_pred EEeCCHHHHHHhCCEEEEEECCEE-EEEcCHHHHHh
Confidence 999999999999999999999997 47788877654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=4e-51 Score=400.20 Aligned_cols=210 Identities=21% Similarity=0.319 Sum_probs=178.5
Q ss_pred CccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eE
Q 008750 95 SSGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KI 163 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~i 163 (555)
+.+|+++||+|+|++..+|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.+. .|
T Consensus 4 d~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi 83 (240)
T d1ji0a_ 4 DIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGI 83 (240)
T ss_dssp SEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTE
T ss_pred ceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcc
Confidence 4579999999999999999999999999999999999999999999999999999999999998642 49
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+|+||+..+++.+||+||+...... ........+.+..++
T Consensus 84 ~~~~q~~~l~~~ltv~en~~~~~~~----------------------------------------~~~~~~~~~~~~~~~ 123 (240)
T d1ji0a_ 84 ALVPEGRRIFPELTVYENLMMGAYN----------------------------------------RKDKEGIKRDLEWIF 123 (240)
T ss_dssp EEECSSCCCCTTSBHHHHHHGGGTT----------------------------------------CCCSSHHHHHHHHHH
T ss_pred cccCcccccCCcccHHHHHHHHHHh----------------------------------------cCCHHHHHHHHHHHH
Confidence 9999999999999999998643210 011122233344444
Q ss_pred hhc-CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHH
Q 008750 244 PEL-GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFL 319 (555)
Q Consensus 244 ~~l-gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l 319 (555)
..+ ++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++++ +.|.|||+||||++++
T Consensus 124 ~~~~~l~-~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~ 202 (240)
T d1ji0a_ 124 SLFPRLK-ERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGA 202 (240)
T ss_dssp HHCHHHH-TTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHH
T ss_pred HHhhChH-HHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 443 332 46689999999999999999999999999999999999999999999988764 4699999999999999
Q ss_pred HhhcceeEEecCCeEeeccCChHHHHH
Q 008750 320 DQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 320 ~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
.++||||++|++|++ ++.|+.+++..
T Consensus 203 ~~~~drv~vl~~G~i-v~~g~~~el~~ 228 (240)
T d1ji0a_ 203 LKVAHYGYVLETGQI-VLEGKASELLD 228 (240)
T ss_dssp HHHCSEEEEEETTEE-EEEEEHHHHHT
T ss_pred HHhCCEEEEEECCEE-EEEcCHHHHhc
Confidence 999999999999997 56788877654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.5e-50 Score=393.78 Aligned_cols=209 Identities=26% Similarity=0.381 Sum_probs=183.3
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC---------ceEEEEe
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN---------MKIAFLS 167 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~---------~~ig~v~ 167 (555)
.|.++||+++|+++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+ ..+||+|
T Consensus 2 aI~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vp 81 (238)
T d1vpla_ 2 AVVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLP 81 (238)
T ss_dssp CEEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEEC
T ss_pred CEEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEee
Confidence 4899999999999999999999999999999999999999999999999999999999999864 3599999
Q ss_pred cccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcC
Q 008750 168 QEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELG 247 (555)
Q Consensus 168 Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg 247 (555)
|++.+++++|+.||+..... + ......+....++.+++.++
T Consensus 82 q~~~~~~~ltv~e~l~~~~~---------------~------------------------~~~~~~~~~~~~~~~l~~~~ 122 (238)
T d1vpla_ 82 EEAGAYRNMQGIEYLRFVAG---------------F------------------------YASSSSEIEEMVERATEIAG 122 (238)
T ss_dssp TTCCCCTTSBHHHHHHHHHH---------------H------------------------HCCCHHHHHHHHHHHHHHHC
T ss_pred eccccCCCccHHHHHHHHHH---------------h------------------------cCCCHHHHHHHHHHHHHhCC
Confidence 99999999999999753210 0 01223345567788889999
Q ss_pred CCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcc
Q 008750 248 FTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 248 l~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~d 324 (555)
+. ...++++.+||||||||++|||||+.+|++|||||||++||+.++..++++++ +.|.|||++|||++++..+||
T Consensus 123 l~-~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~d 201 (238)
T d1vpla_ 123 LG-EKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCD 201 (238)
T ss_dssp CG-GGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCS
T ss_pred CH-HHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCC
Confidence 85 56788999999999999999999999999999999999999999999988874 468999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++|++|++ .+.|+.++...
T Consensus 202 rv~vl~~G~i-v~~g~~~el~~ 222 (238)
T d1vpla_ 202 RIALIHNGTI-VETGTVEELKE 222 (238)
T ss_dssp EEEEEETTEE-EEEEEHHHHHH
T ss_pred EEEEEECCEE-EEEcCHHHHHh
Confidence 9999999997 46788776643
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4e-51 Score=404.02 Aligned_cols=222 Identities=21% Similarity=0.253 Sum_probs=184.1
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----------eEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----------KIA 164 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----------~ig 164 (555)
.+|+++||+++|++.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. .|+
T Consensus 3 ~iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~ 82 (254)
T d1g6ha_ 3 EILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 82 (254)
T ss_dssp EEEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred ceEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCC
Confidence 479999999999999999999999999999999999999999999999999999999999998653 499
Q ss_pred EEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhh
Q 008750 165 FLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMP 244 (555)
Q Consensus 165 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 244 (555)
|+||++.+++.+||.||+..+.... . ... +..+.............+++.++++
T Consensus 83 ~v~Q~~~~~~~ltv~enl~~~~~~~---------------~-~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~ 136 (254)
T d1g6ha_ 83 RTFQTPQPLKEMTVLENLLIGEICP---------------G-ESP----------LNSLFYKKWIPKEEEMVEKAFKILE 136 (254)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTST---------------T-SCH----------HHHHHHCSSCCCCHHHHHHHHHHHH
T ss_pred ccCCccccCCCCeeeeeeeehhhhc---------------c-ccc----------hhhhhhhcccccHHHHHHHHHHHHH
Confidence 9999999999999999986531000 0 000 0000000001122334567888999
Q ss_pred hcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHH---cCCCceEEEEecCHHHHHh
Q 008750 245 ELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYL---GKQDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 245 ~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l---~~~~~tvIiiSHd~~~l~~ 321 (555)
.+++. ...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+ ++.|.|||+||||++++.+
T Consensus 137 ~~~l~-~~~~~~~~~LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~ 215 (254)
T d1g6ha_ 137 FLKLS-HLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLN 215 (254)
T ss_dssp HTTCG-GGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGG
T ss_pred hcCcc-hhccCchhhCCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH
Confidence 99986 4678999999999999999999999999999999999999999999888876 3569999999999999999
Q ss_pred hcceeEEecCCeEeeccCChHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYV 345 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~ 345 (555)
+||||++|++|++ ++.|..++..
T Consensus 216 ~~Drv~vm~~G~i-v~~g~~~e~~ 238 (254)
T d1g6ha_ 216 YIDHLYVMFNGQI-IAEGRGEEEI 238 (254)
T ss_dssp GCSEEEEEETTEE-EEEEESHHHH
T ss_pred hCCEEEEEeCCEE-EEEecHHHHh
Confidence 9999999999997 4667776544
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=2.1e-49 Score=384.44 Aligned_cols=203 Identities=28% Similarity=0.385 Sum_probs=177.1
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC--------ceEEEEec
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN--------MKIAFLSQ 168 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~--------~~ig~v~Q 168 (555)
.|++ ++.++|++..+ ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|.+ .+||||||
T Consensus 2 ~l~v-~~~k~~g~~~~--~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q 77 (240)
T d2onka1 2 FLKV-RAEKRLGNFRL--NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEE-EEEEEETTEEE--EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEE-EEEEEECCEEE--EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeecc
Confidence 3677 67899988765 8999995 68999999999999999999999999999999999854 26999999
Q ss_pred ccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCC
Q 008750 169 EFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGF 248 (555)
Q Consensus 169 ~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl 248 (555)
++.+++++||+||+..++. .....+.++++.++++.+|+
T Consensus 78 ~~~l~~~ltV~enl~~~l~-----------------------------------------~~~~~~~~~~v~~~l~~~gl 116 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLR-----------------------------------------NVERVERDRRVREMAEKLGI 116 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCT-----------------------------------------TSCHHHHHHHHHHHHHTTTC
T ss_pred chhhcccchhhHhhhhhhc-----------------------------------------ccCHHHHHHHHHHHHHhcCc
Confidence 9999999999999875421 11223345678999999999
Q ss_pred CccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcc
Q 008750 249 TADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCT 324 (555)
Q Consensus 249 ~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~d 324 (555)
. +..++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.++ +.|.|||+||||++++.++||
T Consensus 117 ~-~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~ad 195 (240)
T d2onka1 117 A-HLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLAD 195 (240)
T ss_dssp T-TTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCS
T ss_pred H-hhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCC
Confidence 6 57899999999999999999999999999999999999999999999888764 358999999999999999999
Q ss_pred eeEEecCCeEeeccCChHHHHH
Q 008750 325 KIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 325 ri~~l~~G~~~~~~G~y~~~~~ 346 (555)
||++|++|++ ++.|+..+.+.
T Consensus 196 ri~vm~~G~i-i~~G~~~el~~ 216 (240)
T d2onka1 196 EVAVMLNGRI-VEKGKLKELFS 216 (240)
T ss_dssp EEEEEETTEE-EEEECHHHHHH
T ss_pred EEEEEECCEE-EEEecHHHHhc
Confidence 9999999997 56788777653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.4e-49 Score=386.13 Aligned_cols=215 Identities=22% Similarity=0.392 Sum_probs=170.0
Q ss_pred CccEEEEeEEEEeCCc---eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------
Q 008750 95 SSGVKLENISKSYKGV---TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM---------- 161 (555)
Q Consensus 95 ~~~i~l~nls~~y~~~---~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~---------- 161 (555)
++.|+++||+|+|++. .+|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+.
T Consensus 9 ~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~ 88 (251)
T d1jj7a_ 9 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHR 88 (251)
T ss_dssp CCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred cceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHH
Confidence 4459999999999753 599999999999999999999999999999999999999999999999653
Q ss_pred eEEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Q 008750 162 KIAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSK 241 (555)
Q Consensus 162 ~ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (555)
.|+||+|++.+ |..||++|+..+......... +.... .......
T Consensus 89 ~i~~v~Q~~~l-f~~tv~eni~~g~~~~~~~~~----~~~~~-------------------------------~~~~~~~ 132 (251)
T d1jj7a_ 89 QVAAVGQEPQV-FGRSLQENIAYGLTQKPTMEE----ITAAA-------------------------------VKSGAHS 132 (251)
T ss_dssp HEEEECSSCCC-CSSBHHHHHHCSCSSCCCHHH----HHHHH-------------------------------HHHTCHH
T ss_pred Hhhhccccccc-cCcchhhhhhhhhcccchHHH----HHHHH-------------------------------HHHHHHH
Confidence 59999999987 577999999754211000000 00000 0001111
Q ss_pred Hhhhc--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC----CCceEEEEecC
Q 008750 242 LMPEL--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK----QDVPMVIISHD 315 (555)
Q Consensus 242 ~l~~l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~----~~~tvIiiSHd 315 (555)
.+..+ |+. ...++.+.+|||||||||+|||||+.+|+||||||||++||+.+...+.+.|.+ .++|+|+||||
T Consensus 133 ~i~~l~~g~~-~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~ 211 (251)
T d1jj7a_ 133 FISGLPQGYD-TEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQH 211 (251)
T ss_dssp HHHTSTTGGG-CBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSC
T ss_pred HHHhccccch-hhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCC
Confidence 22222 332 234566789999999999999999999999999999999999999999988753 48999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVLEK 348 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~~~ 348 (555)
++.+. .||||++|++|++ +..|++++.++.+
T Consensus 212 l~~~~-~aDrI~vl~~G~i-v~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 212 LSLVE-QADHILFLEGGAI-REGGTHQQLMEKK 242 (251)
T ss_dssp HHHHH-TCSEEEEEETTEE-EEEECHHHHHHHT
T ss_pred HHHHH-hCCEEEEEECCEE-EEECCHHHHHhCC
Confidence 99985 5999999999997 5679998887643
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=6.8e-49 Score=383.95 Aligned_cols=210 Identities=24% Similarity=0.422 Sum_probs=166.9
Q ss_pred EEEEeEEEEeC--CceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 98 VKLENISKSYK--GVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 98 i~l~nls~~y~--~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
|+++||+|+|+ +.++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .|+|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 79999999994 45699999999999999999999999999999999999999999999998653 5999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
|+|++.+ |..||++|+....... .. +.+..... ...+.+.+..
T Consensus 82 v~Q~~~l-f~~Ti~eNi~~~~~~~-~~----~~~~~~~~-------------------------------~~~~~~~i~~ 124 (241)
T d2pmka1 82 VLQDNVL-LNRSIIDNISLANPGM-SV----EKVIYAAK-------------------------------LAGAHDFISE 124 (241)
T ss_dssp ECSSCCC-TTSBHHHHHCTTSTTC-CH----HHHHHHHH-------------------------------HHTCHHHHTT
T ss_pred Eeccccc-CCccccccccccCccc-cH----HHHHHHHH-------------------------------HHhhHHHHHh
Confidence 9999876 6789999996432100 00 00000000 0001111222
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ |++ ......+..|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++ .++|+|+||||++.+.
T Consensus 125 ~~~~~~-t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 202 (241)
T d2pmka1 125 LREGYN-TIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK- 202 (241)
T ss_dssp STTGGG-SBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-
T ss_pred hhcchh-hhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHH-
Confidence 1 221 234556789999999999999999999999999999999999999999988764 4899999999999985
Q ss_pred hcceeEEecCCeEeeccCChHHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
.||+|++|++|++ +..|++++.+..
T Consensus 203 ~~D~i~vl~~G~I-v~~G~~~ell~~ 227 (241)
T d2pmka1 203 NADRIIVMEKGKI-VEQGKHKELLSE 227 (241)
T ss_dssp TSSEEEEEETTEE-EEEECHHHHHHS
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 6999999999997 567999888764
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.7e-49 Score=389.08 Aligned_cols=213 Identities=20% Similarity=0.348 Sum_probs=163.9
Q ss_pred cEEEEeEEEEeCC-ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCC----------ceEEE
Q 008750 97 GVKLENISKSYKG-VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSN----------MKIAF 165 (555)
Q Consensus 97 ~i~l~nls~~y~~-~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~----------~~ig~ 165 (555)
+|+++||+|+|++ +++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+ .+|||
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 5899999999954 579999999999999999999999999999999999999999999999854 25999
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
|+|++.+ |..||+||+........ ..+.+.. ..... . ....+..
T Consensus 81 v~Q~~~l-f~~ti~eNi~~~~~~~~------------------~~~~~~~-------~~~~~---~-------~~~~~~~ 124 (242)
T d1mv5a_ 81 VSQDSAI-MAGTIRENLTYGLEGDY------------------TDEDLWQ-------VLDLA---F-------ARSFVEN 124 (242)
T ss_dssp ECCSSCC-CCEEHHHHTTSCTTSCS------------------CHHHHHH-------HHHHH---T-------CTTTTTS
T ss_pred Ecccccc-CCcchhhheeccccccc------------------chhhHHH-------HHHHH---H-------hhhhhcc
Confidence 9999987 55699999854321000 0000000 00000 0 0000000
Q ss_pred c--CCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 246 L--GFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 246 l--gl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
+ ++. ........+|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++ .++|+|+||||++.+.
T Consensus 125 ~~~~~~-~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 202 (242)
T d1mv5a_ 125 MPDQLN-TEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV- 202 (242)
T ss_dssp STTGGG-CEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-
T ss_pred Cccccc-ccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-
Confidence 0 111 122334568999999999999999999999999999999999988888877754 4899999999999996
Q ss_pred hcceeEEecCCeEeeccCChHHHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLEK 348 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~~ 348 (555)
.||||++|++|++ +..|++++.+...
T Consensus 203 ~~D~i~vl~~G~i-v~~G~~~eLl~~~ 228 (242)
T d1mv5a_ 203 DADKIYFIEKGQI-TGSGKHNELVATH 228 (242)
T ss_dssp HCSEEEEEETTEE-CCCSCHHHHHHHC
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhCC
Confidence 5999999999997 5789999887643
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=6.3e-48 Score=380.26 Aligned_cols=215 Identities=24% Similarity=0.407 Sum_probs=168.1
Q ss_pred ccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eE
Q 008750 96 SGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KI 163 (555)
Q Consensus 96 ~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~i 163 (555)
+.|+++||+|+|++ .++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .|
T Consensus 12 g~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 91 (253)
T d3b60a1 12 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQV 91 (253)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTE
T ss_pred eEEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheE
Confidence 45999999999964 4699999999999999999999999999999999999999999999998643 59
Q ss_pred EEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHh
Q 008750 164 AFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLM 243 (555)
Q Consensus 164 g~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 243 (555)
+||+|++.+ +..|+++|+..+...... .+.+...++ ...+...+..+-
T Consensus 92 ~~v~Q~~~l-~~~ti~~n~~~~~~~~~~----~~~i~~a~~---------------------------~~~l~~~i~~l~ 139 (253)
T d3b60a1 92 ALVSQNVHL-FNDTVANNIAYARTEEYS----REQIEEAAR---------------------------MAYAMDFINKMD 139 (253)
T ss_dssp EEECSSCCC-CSSBHHHHHHTTTTSCCC----HHHHHHHHH---------------------------TTTCHHHHHHST
T ss_pred EEEeecccc-CCcchhhhhhhcCcccCC----HHHHHHHHH---------------------------HHhHHHHHHhcc
Confidence 999999977 677999998643110000 000000000 001111111111
Q ss_pred hhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHh
Q 008750 244 PELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQ 321 (555)
Q Consensus 244 ~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~ 321 (555)
. |++. .....+.+|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|++ .++|+|+||||++.+.
T Consensus 140 ~--gl~t-~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~- 215 (253)
T d3b60a1 140 N--GLDT-IIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE- 215 (253)
T ss_dssp T--GGGS-BCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-
T ss_pred c--cchh-hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-
Confidence 1 3322 33456789999999999999999999999999999999999999999988754 4899999999999985
Q ss_pred hcceeEEecCCeEeeccCChHHHHHH
Q 008750 322 LCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 322 ~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
.||+|++|++|++ +..|++++.+..
T Consensus 216 ~~D~v~vl~~G~I-v~~G~~~eLl~~ 240 (253)
T d3b60a1 216 QADEIVVVEDGII-VERGTHSELLAQ 240 (253)
T ss_dssp TCSEEEEEETTEE-EEEECHHHHHHH
T ss_pred hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 6999999999997 567899887764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.9e-48 Score=380.02 Aligned_cols=215 Identities=26% Similarity=0.430 Sum_probs=168.0
Q ss_pred CccEEEEeEEEEeCC--ceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------e
Q 008750 95 SSGVKLENISKSYKG--VTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------K 162 (555)
Q Consensus 95 ~~~i~l~nls~~y~~--~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ 162 (555)
.+.|+++||+|+|++ .++|+||||+|++||++||||+||||||||+++|+|+++|++|+|.++|.+. .
T Consensus 14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CCEEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence 345999999999965 4699999999999999999999999999999999999999999999998653 5
Q ss_pred EEEEecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHH
Q 008750 163 IAFLSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKL 242 (555)
Q Consensus 163 ig~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (555)
|+||+|++.+ |..||+||+..+..... .+++...++ . ..+...+..+
T Consensus 94 i~~v~Q~~~l-f~~Ti~eNi~~g~~~~~-----~~~~~~al~------------------------~---~~l~~~i~~l 140 (255)
T d2hyda1 94 IGLVQQDNIL-FSDTVKENILLGRPTAT-----DEEVVEAAK------------------------M---ANAHDFIMNL 140 (255)
T ss_dssp EEEECSSCCC-CSSBHHHHHGGGCSSCC-----HHHHHHHHH------------------------H---TTCHHHHHTS
T ss_pred eeeeeccccC-CCCCHHHHHhccCcCCC-----HHHHHHHHH------------------------H---hCCHHHHHhc
Confidence 9999999877 67899999965421000 000000000 0 0111111111
Q ss_pred hhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHH
Q 008750 243 MPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLD 320 (555)
Q Consensus 243 l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~ 320 (555)
-. |++. .......+|||||||||+|||||+.+|+|||||||||+||+.+...+.+.|.+ .++|+|+||||++.+.
T Consensus 141 p~--gl~t-~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~ 217 (255)
T d2hyda1 141 PQ--GYDT-EVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 217 (255)
T ss_dssp TT--GGGC-BCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT
T ss_pred cc--cccc-hhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 11 2221 22344568999999999999999999999999999999999999999998853 5889999999999985
Q ss_pred hhcceeEEecCCeEeeccCChHHHHHH
Q 008750 321 QLCTKIVETEMGVSRTYEGNYSQYVLE 347 (555)
Q Consensus 321 ~~~dri~~l~~G~~~~~~G~y~~~~~~ 347 (555)
.||+|++|++|++ +..|++++.+..
T Consensus 218 -~~D~ii~l~~G~i-v~~G~~~eLl~~ 242 (255)
T d2hyda1 218 -HADKIVVIENGHI-VETGTHRELIAK 242 (255)
T ss_dssp -TCSEEEEEETTEE-EEEECHHHHHHT
T ss_pred -hCCEEEEEECCEE-EEECCHHHHHhC
Confidence 6999999999997 567999887764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-43 Score=353.24 Aligned_cols=205 Identities=25% Similarity=0.370 Sum_probs=156.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccCcCcc
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVSMSRT 177 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~~~~t 177 (555)
|.++|++ |.++++|+||||+|++||++|||||||||||||+++|+|+++|++|+|.++| +|+|++|++.+ +..|
T Consensus 39 i~~~~~~--~~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~i~~v~Q~~~l-~~~t 112 (281)
T d1r0wa_ 39 VSFSHLC--LVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---RVSFCSQFSWI-MPGT 112 (281)
T ss_dssp -CHHHHH--HTTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---CEEEECSSCCC-CSEE
T ss_pred EEEEEcC--CCCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---EEEEEeccccc-cCce
Confidence 5555554 4678999999999999999999999999999999999999999999999987 59999999877 5579
Q ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCccccCCC
Q 008750 178 VREEFMSAFKE-EMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTADDGDRL 256 (555)
Q Consensus 178 v~e~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~ 256 (555)
|++|+..+... ..... . .+. .. .....+..+.+.. .....+.
T Consensus 113 v~eni~~~~~~~~~~~~----~---~~~------------------------~~---~~~~~i~~l~~~~---~~~~~~~ 155 (281)
T d1r0wa_ 113 IKENIIFGVSYDEYRYK----S---VVK------------------------AC---QLQQDITKFAEQD---NTVLGEG 155 (281)
T ss_dssp HHHHHTTTSCCCHHHHH----H---HHH------------------------HT---TCHHHHTTSTTGG---GCEECTT
T ss_pred eeccccccccccchHHH----H---HHH------------------------HH---HhHHHHHhchhhh---hhhhhhh
Confidence 99998643210 00000 0 000 00 0001111111111 1223455
Q ss_pred CCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHH-HcC--CCceEEEEecCHHHHHhhcceeEEecCCe
Q 008750 257 VASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGY-LGK--QDVPMVIISHDRAFLDQLCTKIVETEMGV 333 (555)
Q Consensus 257 ~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~-l~~--~~~tvIiiSHd~~~l~~~~dri~~l~~G~ 333 (555)
..+|||||||||+|||||+.+|+||||||||++||+.+...+.+. +.. .++|+|+||||++.+. .||||++|++|+
T Consensus 156 ~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~-~aDrI~vl~~G~ 234 (281)
T d1r0wa_ 156 GVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLR-KADKILILHQGS 234 (281)
T ss_dssp CTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHH-TCSEEEEEETTE
T ss_pred ccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHH-hCCEEEEEECCE
Confidence 678999999999999999999999999999999999999988765 332 4889999999999884 799999999999
Q ss_pred EeeccCChHHHHHH
Q 008750 334 SRTYEGNYSQYVLE 347 (555)
Q Consensus 334 ~~~~~G~y~~~~~~ 347 (555)
+ ++.|+++++...
T Consensus 235 i-~~~Gt~~eL~~~ 247 (281)
T d1r0wa_ 235 S-YFYGTFSELQSL 247 (281)
T ss_dssp E-EEEECHHHHHHH
T ss_pred E-EEECCHHHHhcc
Confidence 6 677999987654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.1e-43 Score=345.83 Aligned_cols=200 Identities=28% Similarity=0.328 Sum_probs=168.9
Q ss_pred ccEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc----------eEEE
Q 008750 96 SGVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM----------KIAF 165 (555)
Q Consensus 96 ~~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~----------~ig~ 165 (555)
.+|+++||+++| +|+||||+|++||++||+|+||||||||+++|+|+. |++|+|.++|.+. ..+|
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 358999997654 799999999999999999999999999999999976 6899999998753 4799
Q ss_pred EecccccCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhh
Q 008750 166 LSQEFEVSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPE 245 (555)
Q Consensus 166 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 245 (555)
++|+....+..++++++.... ......+.+.++++.
T Consensus 77 ~~~~~~~~~~~~v~~~~~~~~--------------------------------------------~~~~~~~~~~~~~~~ 112 (231)
T d1l7vc_ 77 LSQQQTPPFATPVWHYLTLHQ--------------------------------------------HDKTRTELLNDVAGA 112 (231)
T ss_dssp ECSCCCCCSSCBHHHHHHHHC--------------------------------------------SCTTCHHHHHHHHHH
T ss_pred eeccccCCccccHHHHhhhcc--------------------------------------------chhhHHHHHHHHHHh
Confidence 999987777788887753210 111224456777888
Q ss_pred cCCCccccCCCCCCCChHHHHHHHHHHHhcc-------CCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecC
Q 008750 246 LGFTADDGDRLVASFSSGWQMRMSLGKILLQ-------DPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHD 315 (555)
Q Consensus 246 lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~-------~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd 315 (555)
+++. +..++++.+|||||||||+|||||++ +|+||||||||++||+.+...+.++++ +.|.|||+||||
T Consensus 113 ~~l~-~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHd 191 (231)
T d1l7vc_ 113 LALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHD 191 (231)
T ss_dssp TTCT-TTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCC
T ss_pred cCCH-hHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 8886 45789999999999999999999997 779999999999999999888887764 469999999999
Q ss_pred HHHHHhhcceeEEecCCeEeeccCChHHHHH
Q 008750 316 RAFLDQLCTKIVETEMGVSRTYEGNYSQYVL 346 (555)
Q Consensus 316 ~~~l~~~~dri~~l~~G~~~~~~G~y~~~~~ 346 (555)
++++..+||||++|++|++ ++.|+..+...
T Consensus 192 l~~~~~~~dri~vl~~G~i-v~~G~~~ev~~ 221 (231)
T d1l7vc_ 192 LNHTLRHAHRAWLLKGGKM-LASGRREEVLT 221 (231)
T ss_dssp HHHHHHHCSBCCBEETTEE-CCCSBHHHHSC
T ss_pred HHHHHHHCCEEEEEECCEE-EEECCHHHHhC
Confidence 9999999999999999997 67788776643
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=9.7e-43 Score=331.98 Aligned_cols=187 Identities=21% Similarity=0.332 Sum_probs=151.4
Q ss_pred cEEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCc-----eEEEEecccc
Q 008750 97 GVKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNM-----KIAFLSQEFE 171 (555)
Q Consensus 97 ~i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~-----~ig~v~Q~~~ 171 (555)
.|+++||+|+|+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+. +++|+||+..
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~~ 80 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEII 80 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSCC
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeeccc
Confidence 489999999995 5799999999999999999999999999999999999999999999998643 6999999998
Q ss_pred cCcCccHHHHHHHhhHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHhhhcCCCcc
Q 008750 172 VSMSRTVREEFMSAFKEEMEIAGKLERVQKALESAVDDMDLMGRLLDEFDLLQRKAQAVNLDTLDAKVSKLMPELGFTAD 251 (555)
Q Consensus 172 ~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~ 251 (555)
++...|+.+++..... + .+.+..+..+.+.++.+++..
T Consensus 81 ~~~~~t~~~~l~~~~~---------------~--------------------------~~~~~~~~~~~~~l~~~~~~~- 118 (200)
T d1sgwa_ 81 VPRKISVEDYLKAVAS---------------L--------------------------YGVKVNKNEIMDALESVEVLD- 118 (200)
T ss_dssp CCTTSBHHHHHHHHHH---------------H--------------------------TTCCCCHHHHHHHHHHTTCCC-
T ss_pred CCCCcCHHHHHHHHHH---------------h--------------------------cCCccCHHHHHHHHHHcCCcc-
Confidence 8788899988642110 0 011112334556677777642
Q ss_pred ccCCCCCCCChHHHHHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHc----CCCceEEEEecCHHHHHhhcceeE
Q 008750 252 DGDRLVASFSSGWQMRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLG----KQDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 252 ~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~----~~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
.++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.+.+. +.+.+||.++||+ .+||++.
T Consensus 119 -~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~ 193 (200)
T d1sgwa_ 119 -LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNE 193 (200)
T ss_dssp -TTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEE
T ss_pred -cccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhh
Confidence 356788999999999999999999999999999999999998887776653 3456666666665 3799998
Q ss_pred EecC
Q 008750 328 ETEM 331 (555)
Q Consensus 328 ~l~~ 331 (555)
+|+.
T Consensus 194 ~l~~ 197 (200)
T d1sgwa_ 194 NLHK 197 (200)
T ss_dssp EGGG
T ss_pred heee
Confidence 8853
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.1e-29 Score=242.90 Aligned_cols=128 Identities=29% Similarity=0.463 Sum_probs=82.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q~ 496 (555)
|+++||+++|++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+
T Consensus 1 Iev~nv~k~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 80 (232)
T d2awna2 1 VQLQNVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPAERGVGMVFQS 80 (232)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGGGTCEEEECSS
T ss_pred CEEEEEEEEECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchhhceeeeeccc
Confidence 6899999999999999999999999999999999999999999999999999999999998766 37999999
Q ss_pred CccCCCCCCCHHHHHHhhcc------cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE------DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~------~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..||.||+..... ......+..+|..+++. +..+++|+.|||||||||+||
T Consensus 81 ~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~-~~~~~~~~~LSGGqkQRvaiA 142 (232)
T d2awna2 81 Y--ALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLA-HLLDRKPKALSGGQRQRVAIG 142 (232)
T ss_dssp C--CC---------------------CHHHHHHHHHHHHC----------------------CHH
T ss_pred c--ccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCh-hhhhCChhhCCHHHHHHHHHH
Confidence 6 58899999999986532 11224588999999996 688999999999999999986
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=4.3e-29 Score=241.49 Aligned_cols=128 Identities=30% Similarity=0.488 Sum_probs=110.0
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee--------eEEEecC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL--------PNYFEQN 496 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~--------~~y~~Q~ 496 (555)
|+++|++++|++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. +||++|+
T Consensus 7 I~v~nlsk~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~~r~ig~v~Q~ 86 (239)
T d1v43a3 7 VKLENLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKDRNISMVFQS 86 (239)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGGGGTEEEEEC-
T ss_pred EEEEEEEEEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcccceEEEEeec
Confidence 79999999999999999999999999999999999999999999999999999999999998763 7999998
Q ss_pred CccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 497 QAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 497 ~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+ .+++..||.||+..... ... ...+..+|..+++. +..+++|..|||||||||+||
T Consensus 87 ~--~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGGq~QRvaiA 148 (239)
T d1v43a3 87 Y--AVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIE-ELLNRYPAQLSGGQRQRVAVA 148 (239)
T ss_dssp -------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCG-GGTTSCTTTCCSSCHHHHHHH
T ss_pred h--hhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCh-hhhcCChhhCCHHHHHHHHHH
Confidence 6 58889999999986543 222 23567899999995 588999999999999999986
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.95 E-value=6.6e-29 Score=240.54 Aligned_cols=129 Identities=26% Similarity=0.410 Sum_probs=114.6
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------------e
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------------L 489 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------------~ 489 (555)
.|+++||++.|++..+++++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++ .
T Consensus 3 ~i~v~nl~k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ 82 (240)
T d1g2912 3 GVRLVDVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRD 82 (240)
T ss_dssp EEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSS
T ss_pred cEEEEeEEEEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhccccccc
Confidence 48999999999998999999999999999999999999999999999999999999999998655 3
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|++ .+++..||.||+..... ... ...+..+|..+++. +..+++|+.|||||||||+||
T Consensus 83 ig~v~Q~~--~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~-~~~~~~p~~LSGGqkQRv~IA 151 (240)
T d1g2912 83 IAMVFQSY--ALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLT-ELLNRKPRELSGGQRQRVALG 151 (240)
T ss_dssp EEEECSCC--CCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCG-GGTTCCGGGSCHHHHHHHHHH
T ss_pred ceecccch--hhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCCh-hHhcCChhhCCHHHHHHHHHH
Confidence 78999996 58899999999987632 222 23578899999995 678999999999999999986
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.95 E-value=1.3e-28 Score=238.31 Aligned_cols=129 Identities=25% Similarity=0.405 Sum_probs=113.7
Q ss_pred eEEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-------------
Q 008750 424 VVTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV------------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~------------- 488 (555)
.|+++|+++.|+ +..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr 82 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDR 82 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGS
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhc
Confidence 489999999994 45789999999999999999999999999999999999999999999998765
Q ss_pred eeEEEecCCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 LPNYFEQNQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.+||++|++ .+++..||.||+..... ... ...+..+|..+++. +..+++|+.|||||||||+||
T Consensus 83 ~ig~vfQ~~--~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~-~~~~~~p~~LSGGqkQRvaiA 152 (242)
T d1oxxk2 83 KIGMVFQTW--ALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIH-HVLNHFPRELSGAQQQRVALA 152 (242)
T ss_dssp CEEEEETTS--CCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCG-GGTTSCGGGSCHHHHHHHHHH
T ss_pred cceEEeccc--cccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChH-hhhhCChhhCCHHHHhHHHHH
Confidence 378999996 58899999999987643 222 24578899999995 688999999999999999986
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.95 E-value=2e-28 Score=235.26 Aligned_cols=128 Identities=27% Similarity=0.411 Sum_probs=113.8
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
+|+++||+++|++ .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 1 mi~v~nlsk~y~~-~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~~r~ig~v~Q 79 (229)
T d3d31a2 1 MIEIESLSRKWKN-FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPEKHDIAFVYQ 79 (229)
T ss_dssp CEEEEEEEEECSS-CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHHHHTCEEECT
T ss_pred CEEEEEEEEEeCC-EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchhHhcceeecc
Confidence 4799999999987 489999999999999999999999999999999999999999999999876 3799999
Q ss_pred CCccCCCCCCCHHHHHHhhcc---cCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE---DWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~---~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.||+..... ......+..++..+++. +..+++|..|||||||||+||
T Consensus 80 ~~--~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSGG~~QRvaiA 139 (229)
T d3d31a2 80 NY--SLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIE-HLLDRNPLTLSGGEQQRVALA 139 (229)
T ss_dssp TC--CCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCT-TTTTSCGGGSCHHHHHHHHHH
T ss_pred cc--ccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcch-hhHhCChhhCCHHHhcchhhh
Confidence 95 58899999999976532 22345788899999995 678999999999999999986
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.95 E-value=1.6e-28 Score=236.54 Aligned_cols=130 Identities=28% Similarity=0.375 Sum_probs=112.4
Q ss_pred eEEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
+|+++||++.|+.. .+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 47999999999632 379999999999999999999999999999999999999999999999765
Q ss_pred ---eeEEEecCCccCCCCCCCHHHHHHhhcc-----cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 ---LPNYFEQNQAEALDLDKTVLETVAEAAE-----DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 ---~~~y~~Q~~~~~l~~~~tv~e~l~~~~~-----~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+.+..||.||+..... ... .+.+..+|+.+++.....+++|+.|||||||||+||
T Consensus 81 r~~~ig~v~Q~~--~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIA 157 (230)
T d1l2ta_ 81 RRDKIGFVFQQF--NLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIA 157 (230)
T ss_dssp HHHHEEEECTTC--CCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHH
T ss_pred hcceEEEEecch--hhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHH
Confidence 279999996 57899999999876431 122 245778999999976678999999999999999986
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=3.4e-28 Score=235.56 Aligned_cols=129 Identities=27% Similarity=0.372 Sum_probs=112.8
Q ss_pred eEEEEeeeEEcCCc----cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----------
Q 008750 424 VVTIKNLEFGYEDR----LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------- 488 (555)
Q Consensus 424 ~l~~~~l~~~y~~~----~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------- 488 (555)
+|+++|+++.|+.. .++++|||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|.++
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA 80 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhh
Confidence 47999999999643 479999999999999999999999999999999999999999999999876
Q ss_pred --eeEEEecCCccCCCCCCCHHHHHHhhcc--cC----cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 489 --LPNYFEQNQAEALDLDKTVLETVAEAAE--DW----RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 489 --~~~y~~Q~~~~~l~~~~tv~e~l~~~~~--~~----~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++|++|++ .+++..||.||+..... .+ ..+.+..+|..+++. +..+++|+.|||||||||+||
T Consensus 81 rr~ig~VfQ~~--~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~-~~~~~~~~~LSGG~~QRvaiA 152 (240)
T d3dhwc1 81 RRQIGMIFQHF--NLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-DKHDSYPSNLSGGQKQRVAIA 152 (240)
T ss_dssp HHHEEECCSSC--CCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTT-TTTSSCBSCCCHHHHHHHHHH
T ss_pred hcccccccccc--ccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCc-hhhhCChhhCCHHHHHHHHHh
Confidence 279999996 47789999999987532 11 134678999999996 578999999999999999986
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.95 E-value=7.4e-28 Score=236.53 Aligned_cols=129 Identities=26% Similarity=0.354 Sum_probs=113.9
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------------
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------------- 488 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------------- 488 (555)
|+++||+++|++..++++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++
T Consensus 3 Lev~nl~k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~ 82 (258)
T d1b0ua_ 3 LHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKN 82 (258)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHH
T ss_pred EEEEEEEEEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHh
Confidence 8999999999998999999999999999999999999999999999999999999999998775
Q ss_pred -------eeEEEecCCccCCCCCCCHHHHHHhhc---ccCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhc
Q 008750 489 -------LPNYFEQNQAEALDLDKTVLETVAEAA---EDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTL 554 (555)
Q Consensus 489 -------~~~y~~Q~~~~~l~~~~tv~e~l~~~~---~~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~L 554 (555)
+++|++|++ .+++..||.+++.... .... .+.+..+|..+++.....++.|.+|||||||||+|
T Consensus 83 ~~~~~r~~ig~vfQ~~--~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~i 160 (258)
T d1b0ua_ 83 QLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSI 160 (258)
T ss_dssp HHHHHHHHEEEECSSC--CCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHH
T ss_pred HHHHHhcceEEEEech--hhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHH
Confidence 268999996 4788999999997642 1222 24578899999998666788899999999999998
Q ss_pred C
Q 008750 555 V 555 (555)
Q Consensus 555 a 555 (555)
|
T Consensus 161 A 161 (258)
T d1b0ua_ 161 A 161 (258)
T ss_dssp H
T ss_pred H
Confidence 6
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.94 E-value=3.6e-27 Score=229.49 Aligned_cols=132 Identities=22% Similarity=0.355 Sum_probs=110.7
Q ss_pred CCceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------
Q 008750 421 GRSVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------- 489 (555)
Q Consensus 421 ~~~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------- 489 (555)
.+.+|+++||+++|++..+++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 3 sd~~Lev~~l~k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 3 SDIVLEVQSLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp CSEEEEEEEEEEEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred cceEEEEeeEEEEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 367899999999999989999999999999999999999999999999999999999999999997662
Q ss_pred eEEEecCCccCCCCCCCHHHHHHhhcccC---c--HHHHHHHHhhC-CCChhhhccccCCCChhHHhchhcC
Q 008750 490 PNYFEQNQAEALDLDKTVLETVAEAAEDW---R--IDDIKGLLGRC-NFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 490 ~~y~~Q~~~~~l~~~~tv~e~l~~~~~~~---~--~~~~~~~L~~~-~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++|+. .++++.||.||+....... . ...+...+..+ ++ .+..++++++|||||||||+||
T Consensus 83 i~~~~q~~--~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~LSGG~~Qrv~iA 151 (240)
T d1ji0a_ 83 IALVPEGR--RIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRL-KERLKQLGGTLSGGEQQMLAIG 151 (240)
T ss_dssp EEEECSSC--CCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHH-HTTTTSBSSSSCHHHHHHHHHH
T ss_pred ccccCccc--ccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhCh-HHHHhCchhhCCHHHHHHHHHH
Confidence 57888874 5788999999997654211 1 22344555555 34 4578999999999999999986
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.93 E-value=8.5e-27 Score=228.96 Aligned_cols=129 Identities=25% Similarity=0.341 Sum_probs=112.1
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee-----------eEE
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL-----------PNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~-----------~~y 492 (555)
+|+++||+++|++..+|++|||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ++|
T Consensus 4 iL~v~nlsk~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~ 83 (254)
T d1g6ha_ 4 ILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVR 83 (254)
T ss_dssp EEEEEEEEEEETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEE
T ss_pred eEEEEEEEEEECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCc
Confidence 689999999999999999999999999999999999999999999999999999999999998762 689
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc-----------------cC--cHHHHHHHHhhCCCChhhhccccCCCChhHHhchh
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE-----------------DW--RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQT 553 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-----------------~~--~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~ 553 (555)
++|++ .+.++.||.||+..... .. ..+.+..+|..+++. ...++++..|||||||||+
T Consensus 84 v~Q~~--~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~LSgG~~Qrv~ 160 (254)
T d1g6ha_ 84 TFQTP--QPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLS-HLYDRKAGELSGGQMKLVE 160 (254)
T ss_dssp CCCCC--GGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCG-GGTTSBGGGSCHHHHHHHH
T ss_pred cCCcc--ccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcc-hhccCchhhCCcHHHHHHH
Confidence 99986 36788999999975321 00 123577789999985 4678999999999999999
Q ss_pred cC
Q 008750 554 LV 555 (555)
Q Consensus 554 La 555 (555)
||
T Consensus 161 iA 162 (254)
T d1g6ha_ 161 IG 162 (254)
T ss_dssp HH
T ss_pred HH
Confidence 86
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=5e-26 Score=221.17 Aligned_cols=128 Identities=26% Similarity=0.487 Sum_probs=103.6
Q ss_pred EEEEeeeEEcC--CccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEE
Q 008750 425 VTIKNLEFGYE--DRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (555)
Q Consensus 425 l~~~~l~~~y~--~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y 492 (555)
|+++||+|+|+ ++++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 81 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGV 81 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEE
Confidence 68999999995 35699999999999999999999999999999999999999999999999766 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCC---------C-hhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNF---------K-ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~---------~-~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+ ++.||.+|+....+....+++...+...++ . ...+...+..|||||||||+||
T Consensus 82 v~Q~~--~l-f~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalA 151 (241)
T d2pmka1 82 VLQDN--VL-LNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIA 151 (241)
T ss_dssp ECSSC--CC-TTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHH
T ss_pred Eeccc--cc-CCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhh
Confidence 99986 34 456999999877655555444443333322 1 1234567789999999999986
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.93 E-value=7.6e-26 Score=214.46 Aligned_cols=127 Identities=27% Similarity=0.399 Sum_probs=108.7
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee-----eeEEEecCCc
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV-----LPNYFEQNQA 498 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~-----~~~y~~Q~~~ 498 (555)
.|+++|++++|+ +++|+++||+|.+||+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|+.
T Consensus 2 ~lev~~ls~~y~-~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~~~~~i~~~~~~~- 79 (200)
T d1sgwa_ 2 KLEIRDLSVGYD-KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEI- 79 (200)
T ss_dssp EEEEEEEEEESS-SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGGGGGEEEECSSC-
T ss_pred eEEEEEEEEEeC-CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhHhcCcEEEEeecc-
Confidence 489999999996 5799999999999999999999999999999999999999999999998765 367889874
Q ss_pred cCCCCCCCHHHHHHhhc----ccCcHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 499 EALDLDKTVLETVAEAA----EDWRIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 499 ~~l~~~~tv~e~l~~~~----~~~~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.++...|+.+++.... ......++...|..+++. .+.+++.+|||||||||+||
T Consensus 80 -~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~LSgG~~qrv~ia 137 (200)
T d1sgwa_ 80 -IVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVL--DLKKKLGELSQGTIRRVQLA 137 (200)
T ss_dssp -CCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCC--CTTSBGGGSCHHHHHHHHHH
T ss_pred -cCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCc--ccccccCcCCCcHHHHHHHH
Confidence 4667789999987543 234566788888888874 25678999999999999886
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.92 E-value=6.8e-26 Score=219.96 Aligned_cols=128 Identities=25% Similarity=0.327 Sum_probs=111.4
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee---------eeEEEec
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV---------LPNYFEQ 495 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~---------~~~y~~Q 495 (555)
|+++|++++|+++.+++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 3 I~v~nl~k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~~~~~~i~~vpq 82 (238)
T d1vpla_ 3 VVVKDLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPE 82 (238)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHHHHHTTEEEECT
T ss_pred EEEEeEEEEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChHHHHhhEeEeee
Confidence 7899999999999999999999999999999999999999999999999999999999998765 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcc--cCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAE--DWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~--~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
.. .+++..|+.|++..... ... .+.+..++..+++. +..++++..|||||||||+||
T Consensus 83 ~~--~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~lSgG~~qrv~iA 145 (238)
T d1vpla_ 83 EA--GAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-EKIKDRVSTYSKGMVRKLLIA 145 (238)
T ss_dssp TC--CCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-GGGGSBGGGCCHHHHHHHHHH
T ss_pred cc--ccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHhhhhhhCCHHHHHHHHHH
Confidence 74 57789999999965432 111 23467788888985 578999999999999999986
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.92 E-value=6e-26 Score=221.04 Aligned_cols=129 Identities=21% Similarity=0.417 Sum_probs=99.3
Q ss_pred eEEEEeeeEEcCC-ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEE
Q 008750 424 VVTIKNLEFGYED-RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (555)
Q Consensus 424 ~l~~~~l~~~y~~-~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y 492 (555)
+|+++||+|+|++ +.+|++|||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 1 mle~knvsf~Y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 80 (242)
T d1mv5a_ 1 MLSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGF 80 (242)
T ss_dssp CEEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCE
T ss_pred CEEEEEEEEECCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEE
Confidence 4899999999965 5799999999999999999999999999999999999999999999998765 2689
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc-cCcHHHHHHHHhhCCC------Chhh----hccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNF------KADM----LDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~~------~~~~----~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .++. .||.+|+..... .....++...+...++ .++. +..++..|||||||||+||
T Consensus 81 v~Q~~--~lf~-~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iA 151 (242)
T d1mv5a_ 81 VSQDS--AIMA-GTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIA 151 (242)
T ss_dssp ECCSS--CCCC-EEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHH
T ss_pred Ecccc--ccCC-cchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHH
Confidence 99986 3544 499999865432 2333333333322221 1122 2334567999999999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.92 E-value=1.4e-25 Score=219.67 Aligned_cols=128 Identities=27% Similarity=0.439 Sum_probs=107.4
Q ss_pred EEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEE
Q 008750 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (555)
Q Consensus 425 l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y 492 (555)
|+++||+|+|++ .++|+++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 17 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~ 96 (255)
T d2hyda1 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 96 (255)
T ss_dssp EEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEE
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeee
Confidence 899999999975 4699999999999999999999999999999999999999999999998766 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcccCcHHHHHHHHhhCCCCh------h----hhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAEDWRIDDIKGLLGRCNFKA------D----MLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~L~~~~~~~------~----~~~~~~~~LSGGek~Rv~La 555 (555)
++|++ .+ +..||.+|+....+....+++...+...++.. + .+...+..|||||||||+||
T Consensus 97 v~Q~~--~l-f~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iA 166 (255)
T d2hyda1 97 VQQDN--IL-FSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIA 166 (255)
T ss_dssp ECSSC--CC-CSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHH
T ss_pred eeccc--cC-CCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHH
Confidence 99985 34 45699999987766666667777777666521 1 23345678999999999986
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=2.8e-25 Score=214.22 Aligned_cols=125 Identities=26% Similarity=0.409 Sum_probs=106.4
Q ss_pred eEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee--------eeEEEec
Q 008750 424 VVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV--------LPNYFEQ 495 (555)
Q Consensus 424 ~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~--------~~~y~~Q 495 (555)
.|++ ++.+.|++.. + ++||++. +|+++|+||||||||||+++|+|+++|++|+|.++|.++ .++|++|
T Consensus 2 ~l~v-~~~k~~g~~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~~r~ig~v~Q 77 (240)
T d2onka1 2 FLKV-RAEKRLGNFR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPERRGIGFVPQ 77 (240)
T ss_dssp CEEE-EEEEEETTEE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTTTSCCBCCCS
T ss_pred EEEE-EEEEEECCEE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHHHcCceeecc
Confidence 3667 5778888754 3 7999995 689999999999999999999999999999999999766 3689999
Q ss_pred CCccCCCCCCCHHHHHHhhcccCc----HHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 496 NQAEALDLDKTVLETVAEAAEDWR----IDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 496 ~~~~~l~~~~tv~e~l~~~~~~~~----~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++ .+++..||.||+........ .+.+..+|..+++. +..+++|..|||||||||+||
T Consensus 78 ~~--~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~LSGG~kQRvaiA 138 (240)
T d2onka1 78 DY--ALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGGERQRVALA 138 (240)
T ss_dssp SC--CCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTTTCT-TTTTCCGGGSCHHHHHHHHHH
T ss_pred ch--hhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhcCcH-hhhhCChhhCCHHHHHHHHHH
Confidence 85 58889999999987654332 23588899999995 689999999999999999986
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.5e-25 Score=216.75 Aligned_cols=128 Identities=28% Similarity=0.510 Sum_probs=101.2
Q ss_pred eEEEEeeeEEcCCc---cceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------ee
Q 008750 424 VVTIKNLEFGYEDR---LLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LP 490 (555)
Q Consensus 424 ~l~~~~l~~~y~~~---~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~ 490 (555)
.|+++||+|+|+++ .+|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .+
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i 90 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQV 90 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHE
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHh
Confidence 38999999999753 489999999999999999999999999999999999999999999999766 26
Q ss_pred EEEecCCccCCCCCCCHHHHHHhhcc-cCcHHHH---------HHHHhhC--CCChhhhccccCCCChhHHhchhcC
Q 008750 491 NYFEQNQAEALDLDKTVLETVAEAAE-DWRIDDI---------KGLLGRC--NFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 491 ~y~~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~---------~~~L~~~--~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
+|++|++ .++ ..||.+|+..... .....+. ...+..+ ++ ...+++.+..|||||||||+||
T Consensus 91 ~~v~Q~~--~lf-~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~-~~~i~~~~~~LSGGqkQRvaiA 163 (251)
T d1jj7a_ 91 AAVGQEP--QVF-GRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGY-DTEVDEAGSQLSGGQRQAVALA 163 (251)
T ss_dssp EEECSSC--CCC-SSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGG-GCBCCSSCSSSCHHHHHHHHHH
T ss_pred hhccccc--ccc-CcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccc-hhhHhccCccCChhHceEEEEe
Confidence 8999996 343 4699999986532 2222211 1223333 22 2245677889999999999986
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=8.9e-25 Score=214.06 Aligned_cols=128 Identities=25% Similarity=0.414 Sum_probs=103.6
Q ss_pred EEEEeeeEEcCC--ccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCcee----------eeEE
Q 008750 425 VTIKNLEFGYED--RLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNV----------LPNY 492 (555)
Q Consensus 425 l~~~~l~~~y~~--~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~----------~~~y 492 (555)
|+++||+|+|++ .++|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++ .++|
T Consensus 14 I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~ 93 (253)
T d3b60a1 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93 (253)
T ss_dssp EEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEE
T ss_pred EEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEE
Confidence 899999999975 3689999999999999999999999999999999999999999999998765 3789
Q ss_pred EecCCccCCCCCCCHHHHHHhhcc-cCcHHHHHHHHhhCCCC----------hhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAE-DWRIDDIKGLLGRCNFK----------ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~-~~~~~~~~~~L~~~~~~----------~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|++. + +..|+.+|+..... ....+++...+...++. ...+...+..|||||||||+||
T Consensus 94 v~Q~~~--l-~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiA 164 (253)
T d3b60a1 94 VSQNVH--L-FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIA 164 (253)
T ss_dssp ECSSCC--C-CSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHH
T ss_pred Eeeccc--c-CCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHH
Confidence 999862 4 45699999876642 34555555555444431 1234566789999999999986
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=4.1e-22 Score=192.62 Aligned_cols=125 Identities=25% Similarity=0.377 Sum_probs=103.3
Q ss_pred ceEEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceee----------eEE
Q 008750 423 SVVTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVL----------PNY 492 (555)
Q Consensus 423 ~~l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~----------~~y 492 (555)
.+++++|++++| .++++||+|++||++||+||||||||||+++|+|+. |++|+|.++|.++. .+|
T Consensus 2 ~il~~~dv~~~~----~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~ 76 (231)
T d1l7vc_ 2 IVMQLQDVAEST----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAY 76 (231)
T ss_dssp EEEEEEEECCTT----TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEE
T ss_pred eEEEEECcccCc----eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhcee
Confidence 478999998654 699999999999999999999999999999999965 68999999987652 468
Q ss_pred EecCCccCCCCCCCHHHHHHhhcccC-cHHHHHHHHhhCCCChhhhccccCCCChhHHhchhcC
Q 008750 493 FEQNQAEALDLDKTVLETVAEAAEDW-RIDDIKGLLGRCNFKADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 493 ~~Q~~~~~l~~~~tv~e~l~~~~~~~-~~~~~~~~L~~~~~~~~~~~~~~~~LSGGek~Rv~La 555 (555)
++|+. ......++.+++....... ..+.+..++..+++. +.+++++..|||||||||+||
T Consensus 77 ~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~LSgG~~Qrv~iA 137 (231)
T d1l7vc_ 77 LSQQQ--TPPFATPVWHYLTLHQHDKTRTELLNDVAGALALD-DKLGRSTNQLSGGEWQRVRLA 137 (231)
T ss_dssp ECSCC--CCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTCT-TTTTSBGGGCCHHHHHHHHHH
T ss_pred eeccc--cCCccccHHHHhhhccchhhHHHHHHHHHHhcCCH-hHhCcChhhcCHHHHHHHHHH
Confidence 88874 3445678888887654432 345577888889985 578999999999999999886
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.85 E-value=4.3e-22 Score=197.71 Aligned_cols=122 Identities=25% Similarity=0.375 Sum_probs=91.3
Q ss_pred EEEEeeeEEcCCccceeceEEEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCceeeeEEEecCCccCCCCC
Q 008750 425 VTIKNLEFGYEDRLLFNRANLTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGEHNVLPNYFEQNQAEALDLD 504 (555)
Q Consensus 425 l~~~~l~~~y~~~~ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~~~~~~~y~~Q~~~~~l~~~ 504 (555)
|.++++++ .++++|+++||+|++||++||+||||||||||+++|+|+++|++|.|.++| +++|++|++ .++ .
T Consensus 39 i~~~~~~~--~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g---~i~~v~Q~~--~l~-~ 110 (281)
T d1r0wa_ 39 VSFSHLCL--VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG---RVSFCSQFS--WIM-P 110 (281)
T ss_dssp -CHHHHHH--TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS---CEEEECSSC--CCC-S
T ss_pred EEEEEcCC--CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC---EEEEEeccc--ccc-C
Confidence 44455543 557899999999999999999999999999999999999999999999987 478999985 343 3
Q ss_pred CCHHHHHHhhcccCcHHHHHHHHhhCCC-------C---hhhhccccCCCChhHHhchhcC
Q 008750 505 KTVLETVAEAAEDWRIDDIKGLLGRCNF-------K---ADMLDRKVSLLSGGEKVNQTLV 555 (555)
Q Consensus 505 ~tv~e~l~~~~~~~~~~~~~~~L~~~~~-------~---~~~~~~~~~~LSGGek~Rv~La 555 (555)
.||.+|+..... .........+....+ + ...+.+.+..|||||||||+||
T Consensus 111 ~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lA 170 (281)
T d1r0wa_ 111 GTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLA 170 (281)
T ss_dssp EEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHH
T ss_pred ceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHH
Confidence 599999975432 233333333333322 1 1123456678999999999986
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.70 E-value=9.9e-19 Score=160.73 Aligned_cols=85 Identities=11% Similarity=0.002 Sum_probs=70.2
Q ss_pred CCCChHHHHHHHHHHHhccCCCEEEEcCCCCC--CCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhcceeEEecCCeEe
Q 008750 258 ASFSSGWQMRMSLGKILLQDPDLLLLDEPTNH--LDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKIVETEMGVSR 335 (555)
Q Consensus 258 ~~LSGGqrqRv~lAraL~~~p~lLlLDEPTs~--LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri~~l~~G~~~ 335 (555)
..+|+|++++.++++++..+|++|++|||+.. .+......+.+.+++.+.|+|+++|+.... .+|+++..+++|+++
T Consensus 80 ~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~~~~il~~~h~~~~~-~~~~~i~~~~~~~i~ 158 (178)
T d1ye8a1 80 FEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVH-PLVKEIRRLPGAVLI 158 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCTTSEEEEECCSSCCS-HHHHHHHTCTTCEEE
T ss_pred hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhccCCCEEEEEEccHHHH-HhhceEEEEeCCEEE
Confidence 35899999999999999999999999997644 456778888888988899999999998654 579999999999875
Q ss_pred ec-cCChHH
Q 008750 336 TY-EGNYSQ 343 (555)
Q Consensus 336 ~~-~G~y~~ 343 (555)
.- ..|++.
T Consensus 159 ~v~~~nrd~ 167 (178)
T d1ye8a1 159 ELTPENRDV 167 (178)
T ss_dssp ECCTTTTTT
T ss_pred EECCccHHH
Confidence 43 345543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.08 E-value=1.2e-09 Score=107.90 Aligned_cols=78 Identities=18% Similarity=0.303 Sum_probs=63.9
Q ss_pred CCCCCCChHHHHHHHHHHH----hccCCCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHHHhhcceeEE
Q 008750 255 RLVASFSSGWQMRMSLGKI----LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFLDQLCTKIVE 328 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAra----L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l~~~~dri~~ 328 (555)
.....+|+|||+...++.. ...+|.++++|||-+||+|.....|.++|++ .+.-|||+||.+.+++ .+|+++.
T Consensus 215 ~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~-~~d~~~~ 293 (308)
T d1e69a_ 215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVME-AADLLHG 293 (308)
T ss_dssp CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGG-GCSEEEE
T ss_pred chhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHH-hcccEEE
Confidence 3467899999998776654 5567899999999999999999999998863 4678999999999995 6898855
Q ss_pred --ecCCe
Q 008750 329 --TEMGV 333 (555)
Q Consensus 329 --l~~G~ 333 (555)
+++|.
T Consensus 294 v~~~~g~ 300 (308)
T d1e69a_ 294 VTMVNGV 300 (308)
T ss_dssp EEESSSC
T ss_pred EEEeCCE
Confidence 55664
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.78 E-value=8e-09 Score=105.97 Aligned_cols=74 Identities=19% Similarity=0.391 Sum_probs=60.9
Q ss_pred CCCCCCChHHHHHHHHHHHh----ccCCCEEEEcCCCCCCCHHHHHHHHHHHc---CCCceEEEEecCHHHHHhhcceeE
Q 008750 255 RLVASFSSGWQMRMSLGKIL----LQDPDLLLLDEPTNHLDLDTIEWLEGYLG---KQDVPMVIISHDRAFLDQLCTKIV 327 (555)
Q Consensus 255 ~~~~~LSGGqrqRv~lAraL----~~~p~lLlLDEPTs~LD~~~~~~l~~~l~---~~~~tvIiiSHd~~~l~~~~dri~ 327 (555)
+++..||||||.+++||-.| ..+++++|||||+++||+..+..+.++|. ..+.-+|+|||++.++. .||+++
T Consensus 328 ~~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~-~ad~~~ 406 (427)
T d1w1wa_ 328 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFE-KSDALV 406 (427)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHT-TCSEEE
T ss_pred hhhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHH-hcccEE
Confidence 44577899999998876543 56778999999999999999999998884 33556999999999885 689977
Q ss_pred Ee
Q 008750 328 ET 329 (555)
Q Consensus 328 ~l 329 (555)
.+
T Consensus 407 ~V 408 (427)
T d1w1wa_ 407 GV 408 (427)
T ss_dssp EE
T ss_pred EE
Confidence 55
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.42 E-value=2.9e-08 Score=89.35 Aligned_cols=34 Identities=35% Similarity=0.360 Sum_probs=31.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEECC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLGE 485 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~~ 485 (555)
+|+|+||||||||||+++|+|.++|+.|.+...+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~ 35 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEE 35 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECC
Confidence 6999999999999999999999999999887654
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.17 E-value=1.5e-05 Score=74.53 Aligned_cols=55 Identities=15% Similarity=0.013 Sum_probs=38.6
Q ss_pred HHHHHHHHhccCCCEEEEcCCCCCCCHHHH----HHHHHHHcCCCceEEEEecCHHHHH
Q 008750 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTI----EWLEGYLGKQDVPMVIISHDRAFLD 320 (555)
Q Consensus 266 qRv~lAraL~~~p~lLlLDEPTs~LD~~~~----~~l~~~l~~~~~tvIiiSHd~~~l~ 320 (555)
+++.-..-.+.+..++|+||+..+=|+..- ..+.+.|.+.+..++++||..+...
T Consensus 103 ~~~~~il~~~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 103 EEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp HHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred HHHHHHhccCCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 333333334456679999999999998543 3344555566889999999987764
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.88 E-value=3.7e-05 Score=72.36 Aligned_cols=46 Identities=15% Similarity=0.005 Sum_probs=31.5
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHH----HHHHH-cCCCceEEEEecCHHHH
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEW----LEGYL-GKQDVPMVIISHDRAFL 319 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~----l~~~l-~~~~~tvIiiSHd~~~l 319 (555)
.+.+..++|+||+..+=++..-.. +.+.+ .+.+..+|++||..+..
T Consensus 117 ~~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 117 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred hcccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 355567999999999999854322 23334 44567889999986544
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.32 E-value=7e-06 Score=73.93 Aligned_cols=35 Identities=26% Similarity=0.283 Sum_probs=29.9
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+++.+|++.+| +++|+|+|||||||++.+|.-.+
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 467788888876 99999999999999999997443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=8.8e-06 Score=73.23 Aligned_cols=32 Identities=28% Similarity=0.393 Sum_probs=27.3
Q ss_pred ceeceEEEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 439 LFNRANLTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 439 ll~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.+.+.+|++.+| ..+|+|+|||||||+|.+|.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~ 45 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFV 45 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 367777777766 99999999999999999995
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.12 E-value=0.0013 Score=62.33 Aligned_cols=35 Identities=31% Similarity=0.327 Sum_probs=27.3
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
+-|+++..=+.+|+.+.|.|++|+|||||+.-|+-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 34444433368999999999999999999887763
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.07 E-value=4.4e-05 Score=67.46 Aligned_cols=28 Identities=32% Similarity=0.503 Sum_probs=24.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
+|.|+||+|||||||++.|+..+....+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~ 30 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGV 30 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCC
Confidence 5899999999999999999987765443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.06 E-value=0.00013 Score=63.69 Aligned_cols=24 Identities=33% Similarity=0.300 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999986544
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.94 E-value=0.00015 Score=64.94 Aligned_cols=26 Identities=31% Similarity=0.413 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
|.+++|+||+|||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987764
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.93 E-value=0.0002 Score=62.47 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|+|++|||||||++-|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999987543
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.92 E-value=0.00021 Score=62.66 Aligned_cols=27 Identities=30% Similarity=0.436 Sum_probs=24.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.|..|.|+||.||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999999988653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.91 E-value=0.00025 Score=65.87 Aligned_cols=34 Identities=26% Similarity=0.386 Sum_probs=26.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (555)
+|.+.+++|++|+|||||++.|.|...-..|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4889999999999999999999998776677765
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.84 E-value=0.00026 Score=62.09 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=23.9
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.|.++.|+|++||||||+.+.|+..+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999999765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.81 E-value=0.00022 Score=63.76 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
|..|.|+||+|||||||++.|....+
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999999987654
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.80 E-value=0.00015 Score=63.73 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
+++|+|++|||||||++.|...+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999988776554
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.78 E-value=0.00027 Score=62.09 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.+|+|+||.|||||||.+.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4799999999999999999987553
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.77 E-value=0.00013 Score=64.13 Aligned_cols=30 Identities=30% Similarity=0.277 Sum_probs=25.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
.+.|+|++|+|||||++.|+..+....+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v 32 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEE
Confidence 589999999999999999999886655444
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.69 E-value=0.00051 Score=63.64 Aligned_cols=34 Identities=38% Similarity=0.449 Sum_probs=26.4
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~ 482 (555)
+|...+++|++|+|||||++.|.|......|.|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 4889999999999999999999998776666653
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.68 E-value=0.00037 Score=60.94 Aligned_cols=27 Identities=22% Similarity=0.234 Sum_probs=23.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+|-+|.|+|.+||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.67 E-value=0.00044 Score=60.45 Aligned_cols=28 Identities=25% Similarity=0.448 Sum_probs=24.3
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
++|-+|+|+||.||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4677899999999999999999987543
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.67 E-value=0.00038 Score=60.88 Aligned_cols=27 Identities=15% Similarity=0.171 Sum_probs=23.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+|-+|.|+|+.||||||+.+.|+-.+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999998543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.61 E-value=0.00044 Score=60.68 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++|+|+.|||||||.+.|+..+
T Consensus 9 ~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 9 TVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEECCTTSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999765
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.59 E-value=0.0016 Score=60.19 Aligned_cols=27 Identities=22% Similarity=0.245 Sum_probs=24.1
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
|++|..+.|.|++|||||||+.-|+-.
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999998777644
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.00042 Score=60.49 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.7
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.+.++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999999754
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.57 E-value=0.0058 Score=57.45 Aligned_cols=24 Identities=33% Similarity=0.339 Sum_probs=21.3
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHH
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
.+|+++.|.|+.|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999987665
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.56 E-value=0.00046 Score=66.54 Aligned_cols=20 Identities=55% Similarity=0.916 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008750 452 KTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~ 471 (555)
..+|+|||||||||+|++|.
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~ 45 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIK 45 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHH
Confidence 78999999999999999983
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.53 E-value=0.00026 Score=65.90 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEE
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVI 155 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~ 155 (555)
+|.+++++|++|+|||||++.|.|...-..|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4789999999999999999999998766667775
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.51 E-value=0.00036 Score=61.16 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
+++|+|.+|||||||+.-|...+..
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 7899999999999999988876653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.00056 Score=59.64 Aligned_cols=27 Identities=19% Similarity=0.249 Sum_probs=23.6
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+.+-++.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.00062 Score=58.32 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|.|+||.||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999998754
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.47 E-value=0.00062 Score=58.31 Aligned_cols=23 Identities=48% Similarity=0.466 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.|+|++||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999654
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.47 E-value=0.0007 Score=59.09 Aligned_cols=27 Identities=33% Similarity=0.519 Sum_probs=23.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|-.++|.|++||||||+.+.|+-.+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 457789999999999999999999754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.42 E-value=0.00067 Score=68.05 Aligned_cols=41 Identities=34% Similarity=0.614 Sum_probs=29.4
Q ss_pred EEEEeEEEEeCCceeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH
Q 008750 98 VKLENISKSYKGVTVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 98 i~l~nls~~y~~~~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
|+++|. ++|.+.. .+.+..+.+.+|+|+|||||||++.+|+
T Consensus 6 l~l~NF-ks~~~~~-----~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 6 LELSNF-KSYRGVT-----KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEEESC-SSCCSEE-----EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEEeCe-eeeCCCE-----EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 667775 3454322 3334545699999999999999999984
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.35 E-value=0.00076 Score=60.04 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|||.|+.|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999975433
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.31 E-value=0.00075 Score=58.65 Aligned_cols=22 Identities=32% Similarity=0.422 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|.|+||.||||||+.+.|+-.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.29 E-value=0.00095 Score=57.78 Aligned_cols=24 Identities=38% Similarity=0.425 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.|.|+||.||||||+.+.|+..+.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 689999999999999999987654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.27 E-value=0.0012 Score=57.52 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
..+|.|.|+.||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45899999999999999999998765
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.26 E-value=0.00093 Score=59.42 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
++||-|++|||||||.+.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999986543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.26 E-value=0.00083 Score=58.35 Aligned_cols=23 Identities=35% Similarity=0.465 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++|+|+.||||||+.+.|+-.+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.26 E-value=0.0012 Score=57.42 Aligned_cols=26 Identities=23% Similarity=0.222 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46889999999999999999998763
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.26 E-value=0.0011 Score=56.68 Aligned_cols=22 Identities=32% Similarity=0.403 Sum_probs=19.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G 472 (555)
..|.|+|+.|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999998854
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0012 Score=60.34 Aligned_cols=27 Identities=19% Similarity=0.324 Sum_probs=23.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
.|.++.|+||+|||||||++.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998876543
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.20 E-value=0.0011 Score=58.04 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
.+|+|.|+.||||||+++.|+..+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 47999999999999999999765443
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.20 E-value=0.00054 Score=63.73 Aligned_cols=34 Identities=32% Similarity=0.406 Sum_probs=22.6
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEE
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVL 482 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~ 482 (555)
+|...+++|++|+|||||++.|.|......|.|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4788999999999999999999998776666654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.00073 Score=60.16 Aligned_cols=26 Identities=38% Similarity=0.441 Sum_probs=23.0
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.17 E-value=0.0013 Score=56.18 Aligned_cols=22 Identities=27% Similarity=0.389 Sum_probs=19.0
Q ss_pred CEEEEEcCCCccHHHHHHHHHc
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G 145 (555)
.++.|.|++|||||||.+.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3688999999999999997753
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.15 E-value=0.0012 Score=57.00 Aligned_cols=23 Identities=30% Similarity=0.356 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.|.|+.||||||+.+.|+..+
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQL 26 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999765
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.15 E-value=0.0014 Score=57.45 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.5
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
.+++|.|+.||||||+++.|+-.+..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 57999999999999999999865543
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.0011 Score=59.44 Aligned_cols=23 Identities=17% Similarity=0.458 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|..|+|||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999863
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.06 E-value=0.00092 Score=59.46 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=22.4
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|-+|.|+|+.||||||+.+.|+-.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~ 42 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEY 42 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5779999999999999999999754
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=96.05 E-value=0.019 Score=54.20 Aligned_cols=30 Identities=27% Similarity=0.388 Sum_probs=26.3
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
=|+.|.++-|.|++|||||||+-.++...+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence 367899999999999999999988887654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.97 E-value=0.0013 Score=57.58 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
=+|+|+|+.|||||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 389999999999999999998864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.95 E-value=0.0018 Score=56.59 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999854
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.95 E-value=0.002 Score=58.81 Aligned_cols=26 Identities=27% Similarity=0.592 Sum_probs=22.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|-.|.|+||+|+|||||.+.|.-..
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence 48899999999999999999987543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.93 E-value=0.0017 Score=59.00 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|||.|+.|||||||.+.|+..+.
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 699999999999999998866543
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.93 E-value=0.0017 Score=58.09 Aligned_cols=22 Identities=50% Similarity=0.696 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
|.|+||+|||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997643
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.92 E-value=0.0013 Score=57.66 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|||++|+|||||++.|.+-..
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~~ 38 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDRL 38 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 799999999999999999998653
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0018 Score=55.31 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|||++|+|||||++.|.+-.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999999854
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.90 E-value=0.0017 Score=55.37 Aligned_cols=22 Identities=32% Similarity=0.530 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.|.+.
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999975
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.90 E-value=0.0017 Score=55.82 Aligned_cols=23 Identities=35% Similarity=0.512 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|..|||||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999998753
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.89 E-value=0.0018 Score=57.89 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|+||+|||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999997654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.0024 Score=59.46 Aligned_cols=28 Identities=32% Similarity=0.418 Sum_probs=22.9
Q ss_pred eEEEEecC-CEEEEECCCCCcHHHHHHHH
Q 008750 443 ANLTIERG-EKTAIIGPNGCGKSTLLKLI 470 (555)
Q Consensus 443 vsl~i~~G-e~iaI~G~NGsGKSTLlk~L 470 (555)
.|+.+.++ ..+.|+|||.+||||+||.+
T Consensus 33 Ndi~l~~~~~~~iiTGpN~~GKSt~lk~i 61 (234)
T d1wb9a2 33 NPLNLSPQRRMLIITGPNMGGKSTYMRQT 61 (234)
T ss_dssp EEEEECSSSCEEEEECCTTSSHHHHHHHH
T ss_pred eeEEECCCceEEEEeccCchhhHHHHHHH
Confidence 45666554 46889999999999999998
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.84 E-value=0.0019 Score=55.49 Aligned_cols=23 Identities=39% Similarity=0.583 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|||..|+|||||++.+.+-.
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.84 E-value=0.0018 Score=57.98 Aligned_cols=23 Identities=22% Similarity=0.489 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|+.|+|||||++.|+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 69999999999999999999853
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.83 E-value=0.0019 Score=56.96 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.|+|||+.|+|||||++.|.|.-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999863
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.82 E-value=0.002 Score=57.86 Aligned_cols=21 Identities=48% Similarity=0.754 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
|.|+||+|||||||.+.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999998653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.82 E-value=0.0023 Score=57.01 Aligned_cols=26 Identities=42% Similarity=0.514 Sum_probs=23.1
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++|=++.|+|+.||||||+.+.|+-.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~ 26 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKN 26 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999953
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.82 E-value=0.002 Score=56.06 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|+|+.||||||+.++|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998654
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.80 E-value=0.002 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|+.|+|||||++.+++-.
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999988654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.80 E-value=0.0023 Score=56.63 Aligned_cols=23 Identities=39% Similarity=0.573 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++||+|..|+|||||++.|+|..
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.78 E-value=0.0026 Score=56.71 Aligned_cols=25 Identities=28% Similarity=0.594 Sum_probs=22.8
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
++|=+|.|+||-||||||+.+.|+.
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAK 25 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHH
Confidence 4688999999999999999999984
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.77 E-value=0.0024 Score=56.30 Aligned_cols=23 Identities=35% Similarity=0.478 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.77 E-value=0.0021 Score=56.41 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.3
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.+.|+|+.||||||+.+.|+-.+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 347799999999999999998543
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.76 E-value=0.0087 Score=55.96 Aligned_cols=22 Identities=50% Similarity=0.665 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|.||.|+|||+|.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 5799999999999999999754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.76 E-value=0.0022 Score=57.60 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|+||+|||||||++.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987543
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0023 Score=58.18 Aligned_cols=43 Identities=19% Similarity=0.208 Sum_probs=28.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~ 171 (555)
++||-|+.|||||||.+.|+-.+.-.. +.-....+.+++++.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l~~~~----~~~~~~~~~vi~~D~y 46 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLLGQNE----VDYRQKQVVILSQDSF 46 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGG----SCGGGCSEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhchhc----cccCCCceEEEecccc
Confidence 689999999999999999976653210 0001124667777643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.75 E-value=0.0022 Score=54.77 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|.|+|+.|||||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999998643
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.73 E-value=0.0025 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.546 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+|+|+|..|+|||||++.|.|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.73 E-value=0.0023 Score=58.87 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.71 E-value=0.0023 Score=57.20 Aligned_cols=24 Identities=33% Similarity=0.282 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
-+++|+||.||||||+.+.|+-.+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999644
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.69 E-value=0.0023 Score=55.03 Aligned_cols=25 Identities=44% Similarity=0.652 Sum_probs=22.1
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
|=+++|+|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3378999999999999999999864
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=95.67 E-value=0.0025 Score=54.83 Aligned_cols=25 Identities=44% Similarity=0.640 Sum_probs=22.6
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
|=+|+|+|+.|+|||||++.|+|..
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4589999999999999999999864
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.66 E-value=0.0029 Score=55.28 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.|+|+|+.|+|||||++.|+|...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998543
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.66 E-value=0.0015 Score=57.84 Aligned_cols=23 Identities=39% Similarity=0.709 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
-|||||+.++|||||++.|+|..
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEEC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998753
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.65 E-value=0.0026 Score=58.51 Aligned_cols=22 Identities=36% Similarity=0.371 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|+|+.|||||||++.|...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRY 23 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.63 E-value=0.0027 Score=55.25 Aligned_cols=22 Identities=36% Similarity=0.377 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
|.|+|+.||||||+.++|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999997654
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.62 E-value=0.0037 Score=54.03 Aligned_cols=24 Identities=29% Similarity=0.531 Sum_probs=21.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|+|+|+.|||||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 689999999999999999998543
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.60 E-value=0.003 Score=55.80 Aligned_cols=24 Identities=46% Similarity=0.612 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
=+|||+|..|+|||||++.|+|..
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTST
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC
Confidence 379999999999999999999853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.59 E-value=0.0036 Score=54.15 Aligned_cols=24 Identities=33% Similarity=0.631 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|||+.|+|||||++.|.+...
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCCC
Confidence 588999999999999999998643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.57 E-value=0.002 Score=56.87 Aligned_cols=22 Identities=41% Similarity=0.620 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
|||+|..|+|||||++.|+|.-
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.55 E-value=0.0031 Score=56.45 Aligned_cols=24 Identities=29% Similarity=0.308 Sum_probs=21.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++.|+||.||||||+.+.|+-.+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999765
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.54 E-value=0.0031 Score=55.37 Aligned_cols=23 Identities=39% Similarity=0.495 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.53 E-value=0.003 Score=55.02 Aligned_cols=23 Identities=43% Similarity=0.486 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.|+|+.||||||+.++|+-.+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998654
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.53 E-value=0.0025 Score=55.58 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|.|+|+.||||||+.++|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47788999999999999997643
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=95.52 E-value=0.0048 Score=56.96 Aligned_cols=27 Identities=41% Similarity=0.576 Sum_probs=22.3
Q ss_pred eEEEEecCCEEEEECCCCCcHHHHHHHH
Q 008750 443 ANLTIERGEKTAIIGPNGCGKSTLLKLI 470 (555)
Q Consensus 443 vsl~i~~Ge~iaI~G~NGsGKSTLlk~L 470 (555)
.|+.+. ++.+.|+|||.+||||+||.+
T Consensus 29 Ndi~~~-~~~~iiTGpN~~GKSt~lk~i 55 (224)
T d1ewqa2 29 NDLEMA-HELVLITGPNMAGKSTFLRQT 55 (224)
T ss_dssp EEEEES-SCEEEEESCSSSSHHHHHHHH
T ss_pred ceEEeC-CcEEEEECCCccccchhhhhh
Confidence 455554 458999999999999999987
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.52 E-value=0.0033 Score=55.82 Aligned_cols=24 Identities=17% Similarity=0.383 Sum_probs=20.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..+.|+||+|+|||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999888543
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.51 E-value=0.0029 Score=56.78 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|||+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998853
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.49 E-value=0.0034 Score=55.15 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|.|+||.||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999996543
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0046 Score=55.01 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=24.8
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
|++|+++.|.|++|||||||+--++...
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998777543
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0035 Score=55.81 Aligned_cols=23 Identities=39% Similarity=0.335 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.|+||.||||||+.+.|+-.+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.45 E-value=0.0034 Score=54.95 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=19.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+.|.|+|+.||||||+.+.|+-.
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHH
Confidence 34779999999999999999753
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.44 E-value=0.0027 Score=56.52 Aligned_cols=23 Identities=35% Similarity=0.424 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.|+||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998544
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.40 E-value=0.0029 Score=61.87 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=32.6
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEEC
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLLG 484 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~~ 484 (555)
.-+..|.-|.|+|+-|||||||+++|++..+|..=.|.+.
T Consensus 161 ~~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivtiE 200 (323)
T d1g6oa_ 161 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 200 (323)
T ss_dssp HHHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEE
T ss_pred HHHHhCCCEEEEeeccccchHHHHHHhhhcccccceeecc
Confidence 3456677799999999999999999999998865555553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.40 E-value=0.0036 Score=54.58 Aligned_cols=24 Identities=29% Similarity=0.369 Sum_probs=21.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.=+|+|+|..|||||||++.|.+.
T Consensus 15 ~~kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 15 EHKVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999985
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.36 E-value=0.0037 Score=55.50 Aligned_cols=23 Identities=13% Similarity=0.458 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
..|.|+||+|+|||||++.|...
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~ 26 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITK 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHh
Confidence 46899999999999999998753
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.36 E-value=0.0029 Score=56.29 Aligned_cols=22 Identities=36% Similarity=0.388 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|.|+||.||||||+.+.|+--
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.35 E-value=0.0038 Score=54.77 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567889999999999999997653
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.34 E-value=0.0037 Score=54.81 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|.|.|+.||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 567899999999999999987654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.34 E-value=0.0036 Score=55.80 Aligned_cols=24 Identities=25% Similarity=0.263 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.-+|.|+||.||||||+.+.|+..
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 347999999999999999999753
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.34 E-value=0.003 Score=56.45 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+=.|+|.|+-||||||+++.|...+.
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34799999999999999999987653
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.32 E-value=0.0041 Score=54.91 Aligned_cols=23 Identities=39% Similarity=0.505 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.32 E-value=0.0028 Score=56.70 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=23.8
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++-++.|+||.||||||+.+.|+-.+
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 467789999999999999999998754
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.30 E-value=0.0038 Score=55.55 Aligned_cols=21 Identities=38% Similarity=0.493 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|||+|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999964
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.28 E-value=0.0043 Score=55.45 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
-+|.|+||.||||||+.+.|+..+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999998754
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.26 E-value=0.0044 Score=55.50 Aligned_cols=23 Identities=22% Similarity=0.237 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.++|..|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.25 E-value=0.0022 Score=56.25 Aligned_cols=23 Identities=30% Similarity=0.573 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|+|||..++|||||++.|.|.-
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 49999999999999999998864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.24 E-value=0.004 Score=55.88 Aligned_cols=23 Identities=35% Similarity=0.573 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|+.|||||||++.|.|..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999998753
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.24 E-value=0.0051 Score=54.22 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=22.0
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
...+.|.++|+.||||||+.+.++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4567999999999999999999864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.22 E-value=0.0048 Score=54.18 Aligned_cols=23 Identities=43% Similarity=0.684 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|..|+|||||++.|+|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 79999999999999999999863
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.21 E-value=0.0045 Score=53.89 Aligned_cols=23 Identities=48% Similarity=0.548 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|..|||||||++.|.+..
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 68999999999999999999853
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.21 E-value=0.012 Score=51.19 Aligned_cols=21 Identities=29% Similarity=0.537 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|||||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999998764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.19 E-value=0.0042 Score=54.53 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|+|+|+.|+|||||++.|.|..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=95.19 E-value=0.0032 Score=58.85 Aligned_cols=25 Identities=24% Similarity=0.295 Sum_probs=22.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
-|.|.||.|||||||.++|++.+..
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhc
Confidence 4889999999999999999987653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.19 E-value=0.0031 Score=55.76 Aligned_cols=22 Identities=32% Similarity=0.524 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.|||+|+.++|||||++.|+|.
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999874
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=95.17 E-value=0.0047 Score=56.09 Aligned_cols=22 Identities=45% Similarity=0.564 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|.||.||||||+.+.|+..
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~ 26 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKD 26 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.17 E-value=0.0044 Score=58.36 Aligned_cols=22 Identities=27% Similarity=0.593 Sum_probs=20.8
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|+|..|+|||||++.|.|..
T Consensus 35 I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 35 ILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEECCCCCcHHHHHHHHhCCC
Confidence 8999999999999999999964
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.14 E-value=0.0045 Score=55.05 Aligned_cols=21 Identities=29% Similarity=0.566 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
++||.|..||||||+.++|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=95.12 E-value=0.0052 Score=54.24 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|.|+||-||||||+.+.|+..+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999998643
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.0068 Score=53.81 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=23.5
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
|.+|+.+.|.||.|||||||+--++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999877764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.09 E-value=0.005 Score=54.14 Aligned_cols=23 Identities=35% Similarity=0.414 Sum_probs=20.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.08 E-value=0.0018 Score=55.71 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|..|+|||||++.|+|..
T Consensus 2 kI~liG~~n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999853
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.07 E-value=0.0036 Score=61.11 Aligned_cols=32 Identities=28% Similarity=0.389 Sum_probs=27.3
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHcCCCCCc
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAGQEEPDS 151 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~ 151 (555)
+..|.-+.|.|+.|||||||++.|++.++|+.
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 44556689999999999999999999997753
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0057 Score=54.41 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|.|+||.||||||..+.|+..
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.04 E-value=0.0058 Score=53.35 Aligned_cols=22 Identities=45% Similarity=0.646 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.|+|+|..|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.04 E-value=0.0058 Score=53.80 Aligned_cols=23 Identities=43% Similarity=0.466 Sum_probs=20.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.|+|+.||||||+.+.|+-.+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.03 E-value=0.0039 Score=55.60 Aligned_cols=24 Identities=33% Similarity=0.279 Sum_probs=21.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
=+++|-|..|||||||++.|+..+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 379999999999999999999765
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.99 E-value=0.0043 Score=54.60 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
|||+|..++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 8999999999999999999853
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.98 E-value=0.0059 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.378 Sum_probs=21.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|.||.||||||+.+.|+-.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999754
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.94 E-value=0.0062 Score=55.01 Aligned_cols=22 Identities=41% Similarity=0.572 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|.||.||||||+.+.|+..
T Consensus 5 iI~I~GppGSGKgT~ak~La~~ 26 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEA 26 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 7999999999999999999754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.93 E-value=0.0062 Score=55.81 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.+.|.||+|+|||||+++|+..
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~ 68 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALARE 68 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4789999999999999999864
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.92 E-value=0.0034 Score=54.92 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|..++|||||++.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999999864
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.004 Score=57.22 Aligned_cols=27 Identities=33% Similarity=0.431 Sum_probs=23.9
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
++..|+|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.89 E-value=0.0063 Score=53.60 Aligned_cols=25 Identities=36% Similarity=0.318 Sum_probs=21.3
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
++-+.+.++|..||||||+.+-++-
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999998853
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.88 E-value=0.0064 Score=55.15 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|-||.||||||+.+.|+-.+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57888999999999999999755
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.87 E-value=0.0064 Score=54.97 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|||+|+.||||||+.+.+..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.86 E-value=0.0048 Score=55.13 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=23.4
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+..+-+|.|+||.||||||+.+.|+..
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~ 31 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQK 31 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 346778999999999999999999764
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.86 E-value=0.0062 Score=53.51 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|.|+||.||||||..+.|+-.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~ 23 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.86 E-value=0.0069 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.427 Sum_probs=20.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.|+|+.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998643
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.0068 Score=55.14 Aligned_cols=28 Identities=25% Similarity=0.286 Sum_probs=24.2
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
++|-.|+|.|+-||||||+.+.|...+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999999876543
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.83 E-value=0.007 Score=54.05 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
=+++|+|+.||||||+.+.|+-.+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999644
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.82 E-value=0.0071 Score=53.27 Aligned_cols=22 Identities=32% Similarity=0.523 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|.|+||-||||||+.+.|+-.
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999764
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.82 E-value=0.0063 Score=52.59 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988653
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.81 E-value=0.0072 Score=53.15 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|.|+||.||||||+.+.|+..
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.80 E-value=0.0052 Score=57.38 Aligned_cols=24 Identities=29% Similarity=0.295 Sum_probs=21.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
.+.|.||.|||||||.+.|++.+.
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 488999999999999999999764
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.79 E-value=0.0072 Score=54.04 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.|+++|..|||||||.+.|+..
T Consensus 4 li~l~GlpgsGKSTla~~L~~~ 25 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRY 25 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999853
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0086 Score=52.12 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|||+.|+|||||++.+.+-.
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHcCC
Confidence 48999999999999999887643
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.79 E-value=0.007 Score=55.06 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=22.5
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
.+|-+|.|+|.+|||||||.+.|.-
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~ 46 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEH 46 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678899999999999999999974
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.78 E-value=0.0068 Score=54.80 Aligned_cols=21 Identities=43% Similarity=0.582 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
++||.|..||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.77 E-value=0.013 Score=50.76 Aligned_cols=22 Identities=23% Similarity=0.451 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999987763
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.77 E-value=0.0078 Score=54.40 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|.+++|-|..||||||+++.|+..+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.76 E-value=0.0075 Score=54.49 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|-.|+|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998644
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.76 E-value=0.0084 Score=51.87 Aligned_cols=22 Identities=27% Similarity=0.412 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||+.|+|||||++.+.+-
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999987764
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=94.73 E-value=0.0077 Score=53.78 Aligned_cols=25 Identities=32% Similarity=0.328 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.-+|.|+||-||||||+.+.|+..+
T Consensus 6 ~mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 6 LLRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHB
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHH
Confidence 4489999999999999999998643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.73 E-value=0.0088 Score=52.08 Aligned_cols=21 Identities=33% Similarity=0.665 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999999875
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.72 E-value=0.0069 Score=52.67 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+++|+.|||||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.70 E-value=0.0076 Score=54.80 Aligned_cols=27 Identities=37% Similarity=0.513 Sum_probs=23.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++|-+++|-|+.||||||+.+.|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 468899999999999999999988754
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.69 E-value=0.0072 Score=52.90 Aligned_cols=21 Identities=43% Similarity=0.656 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999998765
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.67 E-value=0.0075 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.587 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|+|+.|+|||||++.+.+-
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5789999999999999977654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.62 E-value=0.008 Score=55.62 Aligned_cols=24 Identities=29% Similarity=0.433 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.+.|.||.||||||++++|+....
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 467999999999999999998654
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=94.62 E-value=0.18 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.122 Sum_probs=20.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHc
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
..+++|+|.-|.|||||.+.+..
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35899999999999999998864
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.60 E-value=0.012 Score=51.07 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||..|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 599999999999999987654
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.55 E-value=0.011 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.394 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++++||..|+|||||++-+.+-
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHcC
Confidence 3899999999999999977653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.55 E-value=0.0081 Score=52.95 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+||||...+|||||++.|+|..
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 9999999999999999999753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0096 Score=51.48 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999988753
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.51 E-value=0.0092 Score=54.38 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=25.4
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
+|-.|+|-|+-||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6889999999999999999999877664
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.50 E-value=0.0084 Score=52.19 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.|.+.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.01 Score=52.34 Aligned_cols=22 Identities=32% Similarity=0.416 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.+.+.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 4899999999999999998864
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.47 E-value=0.01 Score=53.86 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=20.3
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
++.+|+++||+|+||||.+--|+-.+
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~ 30 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYY 30 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 46789999999999999655555433
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.46 E-value=0.0083 Score=58.54 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.-+|||+|+.|+|||||+..|...
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~ 77 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGML 77 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHH
Confidence 458999999999999999999743
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.45 E-value=0.012 Score=50.73 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||+.|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999986664
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.44 E-value=0.0087 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.|+|+|+.|+|||||++.|.+-.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.0055 Score=56.21 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.3
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+.+++|-|+-||||||+++.|+..+.
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56899999999999999999998763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.42 E-value=0.009 Score=52.12 Aligned_cols=22 Identities=45% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|||||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999988754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.41 E-value=0.0089 Score=54.64 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+.|.||+|+|||||+++|+..
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~ 56 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKE 56 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHH
Confidence 789999999999999999865
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.41 E-value=0.0089 Score=56.15 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+|..|+|||||++.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 49999999999999999999964
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.40 E-value=0.0072 Score=58.42 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|||.|+.||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 689999999999999999987654
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.39 E-value=0.0029 Score=54.37 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|..|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999985
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.012 Score=51.42 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||+.|+|||||++.+.+-
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999977654
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.011 Score=51.27 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+.+
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998775
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=94.38 E-value=0.0082 Score=55.16 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=23.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCce
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGG 479 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G 479 (555)
.+.+.||.||||||+.++|+..+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 3789999999999999999976665433
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=94.36 E-value=0.0085 Score=52.17 Aligned_cols=22 Identities=41% Similarity=0.696 Sum_probs=19.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||+.|+|||||++.|.+-
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.34 E-value=0.011 Score=51.05 Aligned_cols=22 Identities=41% Similarity=0.531 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+++|+.|+|||||++.+.+.
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988754
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.0086 Score=53.79 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.|+|+|+.|+|||||++.|.+.
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999874
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.32 E-value=0.012 Score=50.82 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++++||.+|+|||||++.+++-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4889999999999999987764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.25 E-value=0.01 Score=51.17 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.011 Score=53.46 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.011 Score=53.36 Aligned_cols=21 Identities=38% Similarity=0.447 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
++||+|..||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999874
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.21 E-value=0.012 Score=53.53 Aligned_cols=27 Identities=30% Similarity=0.475 Sum_probs=24.6
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+|-+++|-|..||||||+.++|+-.+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 689999999999999999999987664
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.013 Score=50.60 Aligned_cols=21 Identities=19% Similarity=0.376 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999998765
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.18 E-value=0.015 Score=50.57 Aligned_cols=24 Identities=42% Similarity=0.679 Sum_probs=21.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|||..|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 488999999999999999988653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.16 E-value=0.013 Score=50.28 Aligned_cols=22 Identities=23% Similarity=0.320 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++.+.+-
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.15 E-value=0.011 Score=51.93 Aligned_cols=21 Identities=33% Similarity=0.496 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987764
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.15 E-value=0.013 Score=51.58 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=20.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|||+.|+|||||++.+.+-.
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 38999999999999999888643
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.013 Score=50.76 Aligned_cols=24 Identities=46% Similarity=0.711 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+++|+|..|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 589999999999999999998643
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.13 E-value=0.011 Score=51.03 Aligned_cols=21 Identities=29% Similarity=0.596 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999874
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.13 E-value=0.011 Score=51.02 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|||||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.12 E-value=0.011 Score=53.77 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=22.9
Q ss_pred ECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 121 KKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 121 ~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++|-++-|.|.+|||||||.+.|.-.
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~ 47 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQ 47 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999998743
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.11 E-value=0.012 Score=52.57 Aligned_cols=23 Identities=39% Similarity=0.508 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|+|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997644
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.013 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.506 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|||||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999875
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.11 E-value=0.01 Score=51.26 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999999764
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.07 E-value=0.016 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.361 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.06 E-value=0.052 Score=54.17 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=38.8
Q ss_pred HHHHHHHHhccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhhccee
Q 008750 266 MRMSLGKILLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQLCTKI 326 (555)
Q Consensus 266 qRv~lAraL~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~~dri 326 (555)
---+|..+|=++||++++.|-. |..+.....+.- ..|.-|+-+-|=-+-+. ..+|+
T Consensus 216 ~~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~aa-~tGhlV~tTlHa~~a~~-~~~Rl 271 (401)
T d1p9ra_ 216 FARGLRAILRQDPDVVMVGEIR---DLETAQIAVQAS-LTGHLVMSTLHTNTAVG-AVTRL 271 (401)
T ss_dssp HHHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHHH-HTTCEEEEEECCSSSHH-HHHHH
T ss_pred HHHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHHH-hcCCeEEEEeccCchHh-hhhhh
Confidence 4556788999999999999987 457666655543 24777887777655553 33443
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.06 E-value=0.012 Score=51.80 Aligned_cols=21 Identities=33% Similarity=0.678 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|||||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998774
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.04 E-value=0.014 Score=50.55 Aligned_cols=24 Identities=38% Similarity=0.710 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|+|+|+.|+|||||++.+.+...
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEEECCCCcCHHHHHHHHhCCcc
Confidence 689999999999999999988543
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=94.03 E-value=0.014 Score=50.57 Aligned_cols=30 Identities=23% Similarity=0.230 Sum_probs=25.8
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
..++|++|.|.|+=|||||||.|.|+..+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 346899999999999999999999976543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.01 E-value=0.012 Score=56.79 Aligned_cols=42 Identities=12% Similarity=0.231 Sum_probs=30.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccccC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFEVS 173 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~~~ 173 (555)
++||.|++||||||+.+.|..++.-.. ...++..+++|.+..
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~-------~~~~v~~Is~D~F~~ 123 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWP-------EHRRVELITTDGFLH 123 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTST-------TCCCEEEEEGGGGBC
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhc-------CCCceEEEeeeeeEC
Confidence 689999999999999999987764211 123567778776543
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.01 E-value=0.017 Score=50.19 Aligned_cols=23 Identities=39% Similarity=0.768 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|.|+|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.00 E-value=0.012 Score=53.67 Aligned_cols=22 Identities=32% Similarity=0.359 Sum_probs=20.2
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|.||+|+|||||+++|+..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 7899999999999999999755
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.016 Score=50.43 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=19.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|||+.|+|||||++-+.+-.
T Consensus 5 KivvvG~~~vGKTsli~r~~~~~ 27 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDKR 27 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48899999999999999876543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.96 E-value=0.015 Score=52.85 Aligned_cols=40 Identities=38% Similarity=0.540 Sum_probs=27.5
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~ 170 (555)
++.++++|||+|+||||.+-=|+-.+. ..| .+|+++.=|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~-~~g--------~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ-NLG--------KKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH-TTT--------CCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC--------CcEEEEEecc
Confidence 467999999999999887665565443 122 3567776554
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.96 E-value=0.015 Score=50.41 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|+|..|+|||||++.+++-
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.95 E-value=0.015 Score=58.29 Aligned_cols=23 Identities=26% Similarity=0.556 Sum_probs=21.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+||+|+.|+|||||++.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999999643
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.92 E-value=0.013 Score=50.73 Aligned_cols=30 Identities=37% Similarity=0.224 Sum_probs=25.9
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
..++|.+++|.|+=|||||||.|.|+.-+-
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 346899999999999999999998886553
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.90 E-value=0.017 Score=49.78 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999988753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.89 E-value=0.018 Score=49.72 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++.+.+-
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999877654
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.88 E-value=0.014 Score=50.44 Aligned_cols=21 Identities=33% Similarity=0.498 Sum_probs=19.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998775
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.88 E-value=0.016 Score=52.76 Aligned_cols=26 Identities=27% Similarity=0.309 Sum_probs=23.6
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
|++|.++.|.|+.|||||||+--++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999977654
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=0.012 Score=51.34 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|.|+|+.|+|||||++.+.+.
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999888753
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.82 E-value=0.018 Score=49.66 Aligned_cols=22 Identities=45% Similarity=0.528 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|..|+|||||++.+.+.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999888753
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.019 Score=49.49 Aligned_cols=21 Identities=33% Similarity=0.330 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||..|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 479999999999999997765
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.79 E-value=0.051 Score=46.82 Aligned_cols=21 Identities=38% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 799999999999999998764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.79 E-value=0.0072 Score=57.73 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|||.|++||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 799999999999999999876543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.78 E-value=0.016 Score=51.86 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.76 E-value=0.015 Score=53.69 Aligned_cols=26 Identities=27% Similarity=0.396 Sum_probs=22.0
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+..+.|.||.|+|||||++.++...
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45689999999999999999887543
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.76 E-value=0.01 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
=+|+|+|+.|+|||||++.|.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36889999999999999999764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.74 E-value=0.017 Score=50.09 Aligned_cols=21 Identities=33% Similarity=0.604 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999999875
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.72 E-value=0.016 Score=50.92 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|||+|.-.+|||||++.|+|..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Confidence 49999999999999999999753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.015 Score=56.72 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=21.6
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.-++||+|+.|||||||+..|+..+
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998543
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.70 E-value=0.011 Score=53.97 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=18.2
Q ss_pred cCCEEEEECCCCCcHHHHHHHHh
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+.-+|+++||||+||||.+--|+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLA 32 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLA 32 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 44589999999999999655554
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.69 E-value=0.016 Score=53.44 Aligned_cols=23 Identities=35% Similarity=0.416 Sum_probs=20.6
Q ss_pred EEEEcCCCccHHHHHHHHHcCCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
+.|.||+|+||||++++|+..+.
T Consensus 55 lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 55 AMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999998653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.018 Score=50.15 Aligned_cols=22 Identities=32% Similarity=0.395 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999887754
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.68 E-value=0.012 Score=51.12 Aligned_cols=26 Identities=19% Similarity=0.290 Sum_probs=22.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
+|.|+|+.|+|||||++.+.+...+.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~~~ 39 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQSVT 39 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCCEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 68899999999999999998765543
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=93.66 E-value=0.015 Score=55.40 Aligned_cols=33 Identities=30% Similarity=0.328 Sum_probs=28.7
Q ss_pred eeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 115 DVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 115 ~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
|.=+.|.+|++.+|+|+.|+|||||+..|+...
T Consensus 35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 344688999999999999999999999998644
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.65 E-value=0.014 Score=53.61 Aligned_cols=23 Identities=35% Similarity=0.492 Sum_probs=20.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+.+.||.|+|||||.++|++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999997543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.65 E-value=0.015 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.225 Sum_probs=19.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
..++.++||||+||||.+--|+-.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999977666643
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.60 E-value=0.021 Score=48.93 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.7
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999997764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.60 E-value=0.018 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=18.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
-+|+++||||+||||.+--|+-.+
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~ 33 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQF 33 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999665555433
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.57 E-value=0.033 Score=48.10 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=19.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988853
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.57 E-value=0.02 Score=51.96 Aligned_cols=26 Identities=31% Similarity=0.406 Sum_probs=23.4
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
|++|..+.|.|+.|||||||.--++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999877653
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.56 E-value=0.017 Score=50.29 Aligned_cols=21 Identities=33% Similarity=0.629 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|||||||++.+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999977654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=93.56 E-value=0.011 Score=51.98 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++.+.+-
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999998654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.02 Score=53.70 Aligned_cols=27 Identities=37% Similarity=0.556 Sum_probs=22.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
...-+.+.||.|||||+|+++|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345688999999999999999997554
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.55 E-value=0.017 Score=50.03 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 789999999999999998765
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.54 E-value=0.015 Score=53.32 Aligned_cols=25 Identities=44% Similarity=0.517 Sum_probs=22.0
Q ss_pred EEEEcCCCccHHHHHHHHHcCCCCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQEEPD 150 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~~p~ 150 (555)
+.+.||.|+|||||.++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6899999999999999999876544
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=93.51 E-value=0.022 Score=51.36 Aligned_cols=25 Identities=24% Similarity=0.256 Sum_probs=22.0
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
|++|+++.|.|++|+|||||+--++
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999985433
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.018 Score=50.11 Aligned_cols=21 Identities=33% Similarity=0.460 Sum_probs=18.0
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||+.|+|||||++-+..
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 388999999999999976654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.48 E-value=0.022 Score=49.72 Aligned_cols=22 Identities=45% Similarity=0.557 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|..|+|||||++.+.+.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998763
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.48 E-value=0.023 Score=48.73 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998874
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.47 E-value=0.016 Score=50.45 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.46 E-value=0.023 Score=49.06 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~ 26 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6899999999999999976643
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.45 E-value=0.015 Score=53.65 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+.|.||.|+||||++++++..
T Consensus 36 lll~Gp~G~GKTt~~~~la~~ 56 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLES 56 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 789999999999999999754
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.44 E-value=0.018 Score=52.54 Aligned_cols=22 Identities=23% Similarity=0.365 Sum_probs=20.1
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|.||+|+|||||+++|+..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.41 E-value=0.016 Score=54.04 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
-|.|.||.|||||+|.++|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 478999999999999999987533
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=93.40 E-value=0.02 Score=52.93 Aligned_cols=26 Identities=15% Similarity=0.290 Sum_probs=21.8
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+..+.|.|+.|+|||||++.++-..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 45689999999999999999887543
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.024 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.482 Sum_probs=20.0
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|+|..|+|||||++.+.+-.
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 48899999999999999887643
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.35 E-value=0.02 Score=54.53 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|||.|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.018 Score=50.10 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999876653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.34 E-value=0.019 Score=52.24 Aligned_cols=21 Identities=29% Similarity=0.320 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+.+.||.||||||++++|+..
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~ 59 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHE 59 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHH
Confidence 689999999999999998754
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.059 Score=46.95 Aligned_cols=22 Identities=23% Similarity=0.448 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.+.+.
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999977653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.31 E-value=0.023 Score=50.43 Aligned_cols=21 Identities=29% Similarity=0.449 Sum_probs=18.9
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++|+|+.|+|||||++.+.+-
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 899999999999999977753
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.29 E-value=0.016 Score=50.85 Aligned_cols=30 Identities=30% Similarity=0.413 Sum_probs=25.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEE
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNV 154 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I 154 (555)
++.|||..|+|||||++-+.....|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 589999999999999999887777877743
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=93.27 E-value=0.011 Score=56.43 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=26.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEecccc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEFE 171 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~~ 171 (555)
++||.|++||||||+.+.|...+... +..+.++.+|.+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~~~---------~v~~~iI~~Dsf 43 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFRRE---------GVKAVSIEGDAF 43 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHH---------TCCEEEEEGGGG
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhhc---------CCCeEEEeCCCC
Confidence 79999999999999999988765321 234567888764
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.24 E-value=0.026 Score=48.74 Aligned_cols=22 Identities=23% Similarity=0.321 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6799999999999999988743
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=93.22 E-value=0.022 Score=51.64 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=23.7
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+++.|.|+.|+|||||+--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999887764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.22 E-value=0.02 Score=50.27 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988765
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.21 E-value=0.02 Score=55.21 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=21.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.-+.++||.|||||+|.|+|+....
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHhhccc
Confidence 3567899999999999999998643
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=93.18 E-value=0.014 Score=50.78 Aligned_cols=24 Identities=29% Similarity=0.437 Sum_probs=20.9
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
++.|+|+.|+|||||++.+.+-..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~~ 37 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQS 37 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999986543
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.18 E-value=0.021 Score=49.39 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999998874
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.16 E-value=0.021 Score=52.04 Aligned_cols=28 Identities=25% Similarity=0.347 Sum_probs=23.4
Q ss_pred EEEEEcCCCccHHHHHHHH-HcCCCCCce
Q 008750 125 KVGLVGVNGAGKTTQLRII-AGQEEPDSG 152 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i-~G~~~p~~G 152 (555)
++.|+|.+|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999876 455668777
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.16 E-value=0.014 Score=50.65 Aligned_cols=22 Identities=32% Similarity=0.516 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|+.|+|||||++.+++.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 6999999999999999988764
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.019 Score=49.84 Aligned_cols=21 Identities=43% Similarity=0.629 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999998864
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=93.14 E-value=0.021 Score=52.36 Aligned_cols=22 Identities=41% Similarity=0.484 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++||+|...+|||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 6999999999999999999874
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.10 E-value=0.022 Score=49.99 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999876653
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.09 E-value=0.027 Score=48.63 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999999874
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.08 E-value=0.025 Score=50.23 Aligned_cols=21 Identities=43% Similarity=0.566 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|||||||++.+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 399999999999999998875
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.022 Score=49.13 Aligned_cols=22 Identities=32% Similarity=0.472 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|..|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988643
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=93.04 E-value=0.02 Score=52.03 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=15.8
Q ss_pred cCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 449 RGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 449 ~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
..-+|+++||+|+||||.+--|+-.+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999765555433
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.03 E-value=0.025 Score=51.47 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=26.1
Q ss_pred CCCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc
Q 008750 122 KGEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (555)
Q Consensus 122 ~Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~ 170 (555)
+.-++++|||+|+||||.+-=|+-.+. . ...+|+++.=|.
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLAa~~~-~--------~~~kV~lit~Dt 49 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLAKMFV-D--------EGKSVVLAAADT 49 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH-H--------TTCCEEEEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H--------CCCceEEEeecc
Confidence 334789999999999887655554332 1 123577777553
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.03 E-value=0.02 Score=51.92 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=27.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~ 170 (555)
..++.++||+|+||||.+-=|+-.+. .. ..+++++.=|.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~-~~--------g~kV~lit~Dt 48 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK-GK--------GRRPLLVAADT 48 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH-HT--------TCCEEEEECCS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCcEEEEeccc
Confidence 45789999999999988777775543 11 23567776553
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.01 E-value=0.021 Score=49.50 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+|..|+|||||++-+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.01 E-value=0.024 Score=55.07 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.-+|+|+|+-|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999998753
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=93.00 E-value=0.021 Score=52.36 Aligned_cols=22 Identities=41% Similarity=0.462 Sum_probs=19.9
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.+.||.|+|||||.++|++.+
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4699999999999999999865
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.99 E-value=0.024 Score=49.58 Aligned_cols=29 Identities=28% Similarity=0.423 Sum_probs=24.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G~ 480 (555)
+|.|+|..|+|||||++-+....-|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 68999999999999999987766677664
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.96 E-value=0.029 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.6
Q ss_pred EecCCEEEEECCCCCcHHHHHHHH
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLI 470 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L 470 (555)
|++|+.+.|.|++|+|||||.--+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999997543
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.94 E-value=0.029 Score=51.18 Aligned_cols=26 Identities=19% Similarity=0.307 Sum_probs=23.3
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
|.+|..+.|.|+.|||||||+--|+-
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999998877654
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.93 E-value=0.026 Score=51.65 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=22.2
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHH
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
+++|.++.|.|+.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999999987553
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.91 E-value=0.024 Score=49.03 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=18.7
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999997654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.89 E-value=0.025 Score=52.13 Aligned_cols=28 Identities=25% Similarity=0.453 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
.-.+.|.||.|+||||+++.|+..++..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~ 70 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDK 70 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTS
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3578999999999999999999776543
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.89 E-value=0.026 Score=56.38 Aligned_cols=22 Identities=32% Similarity=0.717 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|||+|..|+|||||+++|.|.
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~ 79 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGI 79 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.02 Score=53.89 Aligned_cols=29 Identities=31% Similarity=0.538 Sum_probs=24.1
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+....-|.|.||.|||||+|+++|++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 34455689999999999999999998654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.84 E-value=0.024 Score=51.41 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+.+.||.|+||||++++|+..
T Consensus 38 lLl~Gp~G~GKttl~~~la~~ 58 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALARE 58 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHH
Confidence 679999999999999999864
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.79 E-value=0.026 Score=48.82 Aligned_cols=21 Identities=29% Similarity=0.321 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
++.|||..|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999998775
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.77 E-value=0.023 Score=51.96 Aligned_cols=26 Identities=15% Similarity=0.088 Sum_probs=23.6
Q ss_pred EECCCEEEEEcCCCccHHHHHHHHHc
Q 008750 120 VKKGEKVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 120 i~~Ge~~~lvG~NGsGKSTLlk~i~G 145 (555)
|++|.++.|.|++|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 67999999999999999999887764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.76 E-value=0.029 Score=50.94 Aligned_cols=38 Identities=34% Similarity=0.449 Sum_probs=25.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~ 170 (555)
.++++|||+|+||||.+-=|+-.+. ..| .+|+++.=|.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~-~~g--------~kV~lit~Dt 47 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE-QQG--------KSVMLAAGDT 47 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH-TTT--------CCEEEECCCT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH-HCC--------CcEEEEeccc
Confidence 4789999999999887665665443 222 3567776553
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.73 E-value=0.016 Score=50.29 Aligned_cols=22 Identities=41% Similarity=0.444 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++.+++-
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC--
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999977653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.73 E-value=0.018 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=9.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|+|+|..|||||||++.+++.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5999999999999999877763
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.70 E-value=0.026 Score=54.29 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.-+.++||.|||||+|.|.|+..+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3456799999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.69 E-value=0.036 Score=47.62 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999987654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.69 E-value=0.027 Score=48.73 Aligned_cols=21 Identities=33% Similarity=0.545 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|.++|..|||||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999998875
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=92.61 E-value=0.029 Score=53.59 Aligned_cols=25 Identities=36% Similarity=0.496 Sum_probs=22.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
=.+||||...+|||||++.|++--.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~ 35 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVL 35 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCC
Confidence 3699999999999999999998643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=92.59 E-value=0.029 Score=48.52 Aligned_cols=21 Identities=33% Similarity=0.354 Sum_probs=18.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+|..|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=92.59 E-value=0.025 Score=52.68 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+.+.||.|||||+|+++|++...
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 68999999999999999998654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.57 E-value=0.027 Score=51.53 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+|||+|.-.+|||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999864
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=92.55 E-value=0.021 Score=54.33 Aligned_cols=29 Identities=34% Similarity=0.526 Sum_probs=26.8
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+.|-+|.+++|+|+.|+|||||+..|+..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~ 66 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQS 66 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHH
Confidence 68899999999999999999999999763
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.53 E-value=0.02 Score=49.70 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=9.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++.+++-
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999866653
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.50 E-value=0.03 Score=49.30 Aligned_cols=28 Identities=32% Similarity=0.540 Sum_probs=22.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcC--CCCCce
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ--EEPDSG 152 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~--~~p~~G 152 (555)
++.|||..|+|||||++-+.-. +.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 6889999999999999988432 457777
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.48 E-value=0.03 Score=49.20 Aligned_cols=21 Identities=29% Similarity=0.479 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 599999999999999988764
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.03 Score=48.31 Aligned_cols=21 Identities=48% Similarity=0.514 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|+|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 499999999999999996544
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.47 E-value=0.056 Score=47.48 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=26.2
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
.++..-+.| .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 466666666 78889999999999999987765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.39 E-value=0.033 Score=52.97 Aligned_cols=22 Identities=23% Similarity=0.227 Sum_probs=19.2
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877543
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.032 Score=48.82 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++++|..|+|||||++-+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999977664
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.031 Score=51.05 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=23.0
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHh
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
|.+|..+.|.|+.|||||||.-.++
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHH
Confidence 7889999999999999999987775
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.033 Score=48.95 Aligned_cols=21 Identities=38% Similarity=0.360 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999987654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.34 E-value=0.034 Score=50.91 Aligned_cols=21 Identities=29% Similarity=0.354 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|||+|+-||||||+.+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999954
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.29 E-value=0.033 Score=48.78 Aligned_cols=21 Identities=33% Similarity=0.757 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|.|+|..|+|||||++.+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999976654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.28 E-value=0.039 Score=48.26 Aligned_cols=21 Identities=38% Similarity=0.534 Sum_probs=17.9
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
+++|||..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999975544
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.21 E-value=0.038 Score=50.02 Aligned_cols=25 Identities=24% Similarity=0.375 Sum_probs=22.9
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHh
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
|++|+.+.|.|+.|+|||||.--++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8899999999999999999877775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.21 E-value=0.036 Score=48.81 Aligned_cols=28 Identities=36% Similarity=0.546 Sum_probs=23.0
Q ss_pred EEEEECCCCCcHHHHHHHHh--CCCCCCce
Q 008750 452 KTAIIGPNGCGKSTLLKLIM--GLEKPRGG 479 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~--G~~~p~~G 479 (555)
+|.|+|..|+|||||++-+. -...|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 68999999999999999883 23457777
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.19 E-value=0.03 Score=52.39 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+.|.||.|||||+|+++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78999999999999999998543
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.19 E-value=0.031 Score=50.71 Aligned_cols=39 Identities=26% Similarity=0.350 Sum_probs=22.5
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCCCceEEEEcCCCceEEEEeccc
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEPDSGNVIKAKSNMKIAFLSQEF 170 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p~~G~I~~~g~~~~ig~v~Q~~ 170 (555)
..++++|||+|+||||.+-=|+-.+. .. ..+|+++.=|.
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~-~~--------g~kV~lit~Dt 50 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK-KK--------GFKVGLVGADV 50 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH-HT--------TCCEEEEECCC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HC--------CCceEEEEeec
Confidence 35799999999999887665564432 11 23577777554
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.11 E-value=0.04 Score=51.51 Aligned_cols=24 Identities=42% Similarity=0.573 Sum_probs=21.4
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.-+.|.||.|||||+|.+.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 457899999999999999999765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.09 E-value=0.032 Score=51.88 Aligned_cols=23 Identities=35% Similarity=0.287 Sum_probs=20.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
-+.|.||.|||||+|.+.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 47899999999999999999753
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.09 E-value=0.037 Score=50.30 Aligned_cols=28 Identities=25% Similarity=0.391 Sum_probs=23.6
Q ss_pred EEEEECCCCCcHHHHHHHH-hCCCCCCce
Q 008750 452 KTAIIGPNGCGKSTLLKLI-MGLEKPRGG 479 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L-~G~~~p~~G 479 (555)
+|.|+|+.|+|||||++-+ .+...|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 7899999999999999876 456667766
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.06 E-value=0.038 Score=51.71 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.3
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
+.+|+.+.|.|+.|+|||||+--|+-
T Consensus 32 ~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 32 ARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp BCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 68999999999999999998877763
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.05 E-value=0.039 Score=50.51 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
++||.|.-||||||+.++|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999964
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.03 E-value=0.032 Score=49.25 Aligned_cols=21 Identities=29% Similarity=0.445 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
+|+|+|+.|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999977753
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.01 E-value=0.041 Score=50.26 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=22.1
Q ss_pred EecCCEEEEECCCCCcHHHHHHHHh
Q 008750 447 IERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 447 i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+++|..+.|.||.|||||||.--++
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 7899999999999999999876553
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=91.97 E-value=0.04 Score=50.61 Aligned_cols=27 Identities=30% Similarity=0.340 Sum_probs=23.4
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
...+.|.||.|+||||+++.|+..+..
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 357889999999999999999987754
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.96 E-value=0.037 Score=50.14 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHH-HhhcceeEEe
Q 008750 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIVET 329 (555)
Q Consensus 278 p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l-~~~~dri~~l 329 (555)
..++|+||.- ++.......|...+.. ....+++++++..-+ ..+-.|+..+
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~~~l~sr~~~i 155 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAIL 155 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred eEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhhhhHHHHHHHHh
Confidence 5799999965 4445555556555543 355677888887554 3344454444
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=91.87 E-value=0.087 Score=46.19 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=24.2
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
.++..-+.| .|.=+.|.|++|+|||||.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 345444444 57789999999999999987665
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.86 E-value=0.04 Score=53.33 Aligned_cols=24 Identities=33% Similarity=0.649 Sum_probs=21.0
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.-++||.|+-|+|||||+..|...
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHH
Confidence 457999999999999999998854
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.81 E-value=0.033 Score=51.11 Aligned_cols=41 Identities=12% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEecCHHH
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAF 318 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiSHd~~~ 318 (555)
+..++|+||.-. |.......+...+... ...+|++|++.+.
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 456999999854 7888888888877653 3457889998753
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.68 E-value=0.049 Score=47.96 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=18.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+++|||..|+|||||++-+.+-
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999998766543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=91.54 E-value=0.019 Score=55.78 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=24.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLEKP 476 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~~p 476 (555)
|-.+.|+|+-|+|||||+|.|+++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 347999999999999999999988765
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.51 E-value=0.043 Score=49.60 Aligned_cols=51 Identities=14% Similarity=0.191 Sum_probs=32.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEecCHHHHHh-hcceeEEe
Q 008750 278 PDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAFLDQ-LCTKIVET 329 (555)
Q Consensus 278 p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiSHd~~~l~~-~~dri~~l 329 (555)
..++++||.- .+.......|...+... ..-+++++++...+.. +-.|+..+
T Consensus 100 ~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~~~i~sr~~~i 153 (227)
T d1sxjc2 100 FKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRF 153 (227)
T ss_dssp CEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred eEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHhHHHHHHHHhhh
Confidence 3699999964 67777788888887653 3456666766544322 33444443
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.48 E-value=0.044 Score=49.98 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
..|+|-|+=||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3799999999999999999987554
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=91.35 E-value=0.072 Score=51.68 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=26.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCceEEEE
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEKPRGGEVLL 483 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~p~~G~v~~ 483 (555)
+|.|-|+=||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 78999999999999999999887665444444
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.24 E-value=0.049 Score=51.38 Aligned_cols=35 Identities=34% Similarity=0.504 Sum_probs=28.7
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcC
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
.++ |.=+.|-+|++++|+|+.|+|||||+..|+-.
T Consensus 57 raI-D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 57 KVV-DLLAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HHH-HHHSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eee-eeeccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 344 34578999999999999999999998777644
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.15 E-value=0.051 Score=52.17 Aligned_cols=73 Identities=12% Similarity=0.071 Sum_probs=42.1
Q ss_pred HHHHhhhcCCCccccCCCCCCCChHHHHHHHHHHHhccCCCEEEE--cCCCCCCCHHHHHHHHHHHcCCCceEEEEecCH
Q 008750 239 VSKLMPELGFTADDGDRLVASFSSGWQMRMSLGKILLQDPDLLLL--DEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDR 316 (555)
Q Consensus 239 ~~~~l~~lgl~~~~~~~~~~~LSGGqrqRv~lAraL~~~p~lLlL--DEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~ 316 (555)
+.+.+...++.. ....++.-+..++....-+...|-++++ +|.. .....+++.+...+.+..++.++...
T Consensus 182 ~~~~l~~~~l~~-----~~~~~~~~e~~~~~~~~~~~~kP~~~v~Nk~d~~---~~e~~~~~~~~~~~~~~~vi~~sa~~ 253 (319)
T d1wxqa1 182 VWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAANKADAA---SDEQIKRLVREEEKRGYIVIPTSAAA 253 (319)
T ss_dssp HHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---CHHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred HHHHHHhcCCcc-----hhhhcCHHHHHHhHHHhhhhcCchhhhcccccch---hhHHHHHHHHHHhhcCCEEEEecHHH
Confidence 344455555432 2335677777777777777777766663 2322 13444555555555677777777766
Q ss_pred HHH
Q 008750 317 AFL 319 (555)
Q Consensus 317 ~~l 319 (555)
+.-
T Consensus 254 E~~ 256 (319)
T d1wxqa1 254 ELT 256 (319)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.05 E-value=0.067 Score=50.89 Aligned_cols=36 Identities=31% Similarity=0.440 Sum_probs=28.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC------------CCCceEEEECC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLE------------KPRGGEVLLGE 485 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~------------~p~~G~v~~~~ 485 (555)
+-++||+|.--||||||+++|++.. .|.-|.|.+..
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 4469999999999999999999753 34457777654
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=91.04 E-value=0.063 Score=47.51 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.5
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+||+|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.92 E-value=0.047 Score=51.67 Aligned_cols=24 Identities=29% Similarity=0.506 Sum_probs=21.9
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
-+|+|+|+-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 379999999999999999999864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.89 E-value=0.056 Score=49.25 Aligned_cols=23 Identities=17% Similarity=0.380 Sum_probs=21.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+++|=|.-||||||+++.|+-.+
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l 26 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTY 26 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 78999999999999999999755
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.86 E-value=0.041 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.628 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.-|.++||.|||||-|.|.|++.+.
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhC
Confidence 3688999999999999999999653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.75 E-value=0.027 Score=54.56 Aligned_cols=26 Identities=31% Similarity=0.383 Sum_probs=23.6
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
.-+.|+|+-|+|||||+|.|+++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 45899999999999999999999865
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.73 E-value=0.047 Score=51.18 Aligned_cols=25 Identities=32% Similarity=0.361 Sum_probs=22.2
Q ss_pred CCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 123 GEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 123 Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
..-+.|.||.|+|||+|.+.|++.+
T Consensus 41 ~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 41 SKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcchhHHHHHHHHh
Confidence 3448899999999999999999876
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.56 E-value=0.11 Score=48.79 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.7
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCC
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
=++||||-.-+|||||++.|++.-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.49 E-value=0.12 Score=48.94 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=22.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC-CC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE-PD 150 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~-p~ 150 (555)
.++|||.-.||||||++.|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 489999999999999999999753 54
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=90.44 E-value=0.042 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.40 E-value=0.11 Score=45.61 Aligned_cols=32 Identities=22% Similarity=0.289 Sum_probs=24.1
Q ss_pred eeceEEEEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 440 FNRANLTIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 440 l~~vsl~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
++..-+.| .|.-|.|.|++|+|||||.-.|..
T Consensus 6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 44333444 688899999999999998876653
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.40 E-value=0.085 Score=46.61 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|||+|.=.+|||||++.|+|..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 47999999999999999999853
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.39 E-value=0.065 Score=50.97 Aligned_cols=26 Identities=35% Similarity=0.700 Sum_probs=22.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-CC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK-PR 477 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~-p~ 477 (555)
.|+|+|.-.+|||||+++|+|..- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 589999999999999999999763 44
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.22 E-value=0.063 Score=50.04 Aligned_cols=22 Identities=36% Similarity=0.486 Sum_probs=20.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|.||.|+|||+|.+.|+...
T Consensus 41 iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEecCCCCCchHHHHHHHHHh
Confidence 7899999999999999999864
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.065 Score=50.61 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=21.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+|+|+||-++||||||+.|.|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 79999999999999999999854
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.90 E-value=0.078 Score=46.27 Aligned_cols=28 Identities=29% Similarity=0.442 Sum_probs=22.1
Q ss_pred EEEEEcCCCccHHHHHHHHHcC---CCCCce
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ---EEPDSG 152 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~---~~p~~G 152 (555)
++.|+|..|+|||||++-+..- +.|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 5899999999999999988654 335555
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=89.81 E-value=0.051 Score=50.21 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=19.4
Q ss_pred EEEEcCCCccHHHHHHHHHcCC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+.|.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5667999999999999999765
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.76 E-value=0.059 Score=54.44 Aligned_cols=45 Identities=20% Similarity=0.434 Sum_probs=30.2
Q ss_pred CEEEEEcCCCccHHHHHHHHHcCCC-CCceEEEEcCCC-ceEEEEecccc
Q 008750 124 EKVGLVGVNGAGKTTQLRIIAGQEE-PDSGNVIKAKSN-MKIAFLSQEFE 171 (555)
Q Consensus 124 e~~~lvG~NGsGKSTLlk~i~G~~~-p~~G~I~~~g~~-~~ig~v~Q~~~ 171 (555)
.-+.+|||+|||||-|.|.|++.+. | -+..+... ..+|||-.+..
T Consensus 50 sNILliGPTGvGKTlLAr~LAk~l~VP---Fv~~daT~fTeaGYvG~DVe 96 (443)
T d1g41a_ 50 KNILMIGPTGVGKTEIARRLAKLANAP---FIKVEATKFTEVGYVGKEVD 96 (443)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCC---EEEEEGGGGC----CCCCTH
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCC---EEEeecceeeecceeecchh
Confidence 3688999999999999999999763 3 34444332 24788887753
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.67 E-value=0.11 Score=49.11 Aligned_cols=23 Identities=30% Similarity=0.608 Sum_probs=21.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.++|||.-.||||||++.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999975
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.67 E-value=0.082 Score=46.13 Aligned_cols=28 Identities=32% Similarity=0.456 Sum_probs=22.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC---CCCCCce
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG---LEKPRGG 479 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G---~~~p~~G 479 (555)
+|.|+|..|+|||||++.+.. ...|+-|
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 689999999999999998853 3445555
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.64 E-value=0.11 Score=48.50 Aligned_cols=30 Identities=23% Similarity=0.307 Sum_probs=25.5
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
=|+.|.++-|.|++|||||||+-.++....
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 467899999999999999999877776543
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=89.29 E-value=0.16 Score=44.46 Aligned_cols=27 Identities=26% Similarity=0.223 Sum_probs=21.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
-.-.|.-|.|.|++|+|||||.-.|..
T Consensus 10 v~~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 10 VDIYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred EEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344588899999999999998766653
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=89.26 E-value=0.11 Score=48.08 Aligned_cols=24 Identities=33% Similarity=0.523 Sum_probs=20.9
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHh
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
.+|+.+.|.|+.|+|||||+-.|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 359999999999999999886654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.22 E-value=0.1 Score=49.27 Aligned_cols=23 Identities=30% Similarity=0.628 Sum_probs=21.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|+|+|.-.||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999965
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.00 E-value=0.091 Score=49.42 Aligned_cols=29 Identities=24% Similarity=0.478 Sum_probs=25.9
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+.|-+|.+++|.|+.|+|||||+..|+-.
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 78999999999999999999998777543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=88.95 E-value=0.14 Score=48.14 Aligned_cols=36 Identities=33% Similarity=0.498 Sum_probs=28.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC-----------CCCceEEEECC
Q 008750 450 GEKTAIIGPNGCGKSTLLKLIMGLE-----------KPRGGEVLLGE 485 (555)
Q Consensus 450 Ge~iaI~G~NGsGKSTLlk~L~G~~-----------~p~~G~v~~~~ 485 (555)
+=+|||+|---+|||||+++|++.. .|.-|.|.+..
T Consensus 2 ~~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 3479999999999999999999643 34557776543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=88.90 E-value=0.099 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
-+.|.||+|+||||+.++++..
T Consensus 36 ~~Ll~Gp~G~GKtt~a~~~~~~ 57 (239)
T d1njfa_ 36 AYLFSGTRGVGKTSIARLLAKG 57 (239)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 4778999999999999998643
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.87 E-value=0.08 Score=52.72 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=23.3
Q ss_pred ecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 448 ERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 448 ~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.+.-.|.|+||.||||||.+..+.....
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~ 183 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELN 183 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence 3455899999999999999999887543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.75 E-value=0.1 Score=49.90 Aligned_cols=23 Identities=22% Similarity=0.420 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.|||+|.--+|||||+++|+|..
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred cEeEECCCCCCHHHHHHHHHCCC
Confidence 59999999999999999999863
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.69 E-value=0.07 Score=50.16 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=24.7
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
=|+.|.++-|.|++|||||||+-.++....
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q 85 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQ 85 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence 467899999999999999999766665443
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=88.69 E-value=0.16 Score=44.14 Aligned_cols=32 Identities=25% Similarity=0.262 Sum_probs=23.7
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
.++..-+. -.|.=+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLVD-VYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEEE-ETTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHH
Confidence 34443443 467889999999999999886554
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=88.30 E-value=0.1 Score=48.88 Aligned_cols=20 Identities=35% Similarity=0.707 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008750 452 KTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~ 471 (555)
-|+|+|.-|+|||||...|+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 48999999999999999994
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=88.21 E-value=0.11 Score=50.27 Aligned_cols=24 Identities=38% Similarity=0.649 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
+|.|-|+=||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 689999999999999999987654
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=87.99 E-value=0.13 Score=46.10 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
.+.+.||.|+||||+.+.++..
T Consensus 26 ~lLl~Gp~G~GKtt~a~~~a~~ 47 (207)
T d1a5ta2 26 ALLIQALPGMGDDALIYALSRY 47 (207)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHh
Confidence 4789999999999999988764
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=87.96 E-value=0.12 Score=46.51 Aligned_cols=21 Identities=33% Similarity=0.381 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~ 473 (555)
+-|.||.|||||.|+.+++-.
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 579999999999999999754
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=87.88 E-value=0.1 Score=50.57 Aligned_cols=27 Identities=19% Similarity=0.129 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMGLEKPR 477 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G~~~p~ 477 (555)
-+|.|-|+=||||||+++.|...+...
T Consensus 6 lrI~IEG~iGsGKSTl~~~L~~~l~~~ 32 (331)
T d1osna_ 6 LRIYLDGAYGIGKTTAAEEFLHHFAIT 32 (331)
T ss_dssp EEEEEEESSSSCTTHHHHHHHHTTTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 369999999999999999999876654
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=87.80 E-value=0.2 Score=43.43 Aligned_cols=27 Identities=30% Similarity=0.303 Sum_probs=21.5
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+-...|.-|.|.|++|+|||||.-.+.
T Consensus 10 ~v~~~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 10 LVDVYGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred EEEECCEEEEEEeCCCCCHHHHHHHHH
Confidence 344568899999999999999875554
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.77 E-value=0.077 Score=50.00 Aligned_cols=37 Identities=19% Similarity=0.253 Sum_probs=28.8
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
.++ |.=+.|-+|++++|+|+.|+|||+|+..++-...
T Consensus 56 ~~I-D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~ 92 (276)
T d1fx0a3 56 IAI-DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQQ 92 (276)
T ss_dssp TTT-TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTCC
T ss_pred eEE-eccccccCCceEeeccCCCCChHHHHHHHHhhhc
Confidence 344 3456889999999999999999999986544433
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.71 E-value=0.12 Score=48.64 Aligned_cols=20 Identities=25% Similarity=0.303 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008750 452 KTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~ 471 (555)
-|||+|.-|||||||...|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999994
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.61 E-value=0.1 Score=47.42 Aligned_cols=22 Identities=41% Similarity=0.542 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
++.|.|.=||||||||+-|+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999999874
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.60 E-value=0.12 Score=49.60 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.7
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.++||+|+|||.|.+.|+-.+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 37899999999999999999765
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=87.55 E-value=0.19 Score=46.93 Aligned_cols=27 Identities=30% Similarity=0.522 Sum_probs=22.6
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
=|..|.++-|.||+|||||||+=.++.
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~ 76 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIA 76 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHH
Confidence 467899999999999999997655543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.34 E-value=0.17 Score=44.95 Aligned_cols=24 Identities=38% Similarity=0.529 Sum_probs=21.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
.+||+|.-.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999998654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=87.28 E-value=0.15 Score=48.96 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+.++||.|+|||.|.+.|+..+
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l 76 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKAL 76 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchhHHHHHHHHhhc
Confidence 36899999999999999998754
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=87.27 E-value=0.15 Score=47.77 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=19.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~G 472 (555)
-+|+|.|.-|+|||||++.+..
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999864
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.26 E-value=0.12 Score=50.54 Aligned_cols=30 Identities=27% Similarity=0.328 Sum_probs=26.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCCCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.++++..+.+.||.|+|||||.++|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 446778999999999999999999998654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.02 E-value=0.15 Score=45.47 Aligned_cols=21 Identities=33% Similarity=0.385 Sum_probs=18.8
Q ss_pred EEEEEcCCCccHHHHHHHHHc
Q 008750 125 KVGLVGVNGAGKTTQLRIIAG 145 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G 145 (555)
-+||+|.-++|||||+..|.+
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999864
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=86.83 E-value=0.11 Score=49.03 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=28.2
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLEKPRGGE 480 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~~p~~G~ 480 (555)
+.|-+|.+++|+|+.|+|||+|+..++-....+...
T Consensus 62 ~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 62 IPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp SCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred ccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 789999999999999999999987654443434333
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=86.66 E-value=0.15 Score=47.71 Aligned_cols=20 Identities=45% Similarity=0.609 Sum_probs=18.3
Q ss_pred EEEEEcCCCccHHHHHHHHH
Q 008750 125 KVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~ 144 (555)
.+||+|..|+|||||+..|.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll 23 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALL 23 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHH
Confidence 47999999999999999884
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.65 E-value=0.14 Score=50.26 Aligned_cols=30 Identities=20% Similarity=0.072 Sum_probs=26.6
Q ss_pred EEECCCEEEEEcCCCccHHHHHHHHHcCCC
Q 008750 119 EVKKGEKVGLVGVNGAGKTTQLRIIAGQEE 148 (555)
Q Consensus 119 ~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~~ 148 (555)
.++++..+.+.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 447888999999999999999999998763
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.65 E-value=0.23 Score=47.91 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEPD 150 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p~ 150 (555)
+|.|=|.-|+||||+++.|+..+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCccCCHHHHHHHHHHHhccC
Confidence 57888999999999999999876543
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=86.52 E-value=0.11 Score=48.67 Aligned_cols=27 Identities=30% Similarity=0.509 Sum_probs=22.4
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G 472 (555)
=|+.|.++.|.||+|||||||+-.++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHH
Confidence 467899999999999999999644443
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=86.40 E-value=0.17 Score=49.64 Aligned_cols=22 Identities=27% Similarity=0.523 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 008750 453 TAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
+..+||.|||||.|.|.|+...
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred eeeeCCCCccHHHHHHHHHhhc
Confidence 5678999999999999998765
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.07 E-value=0.19 Score=44.91 Aligned_cols=20 Identities=30% Similarity=0.400 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008750 452 KTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~ 471 (555)
.|+|+|.-++|||||+..|.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHH
Confidence 48999999999999999996
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=85.91 E-value=0.25 Score=43.84 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLEK 475 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~~ 475 (555)
.|||+|.=.+|||||+..|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 589999999999999999998543
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.48 E-value=0.2 Score=45.59 Aligned_cols=51 Identities=18% Similarity=0.217 Sum_probs=36.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHHHHHHcC--CCceEEEEecCHHHH-HhhcceeEEe
Q 008750 278 PDLLLLDEPTNHLDLDTIEWLEGYLGK--QDVPMVIISHDRAFL-DQLCTKIVET 329 (555)
Q Consensus 278 p~lLlLDEPTs~LD~~~~~~l~~~l~~--~~~tvIiiSHd~~~l-~~~~dri~~l 329 (555)
..++|+||.=. |...+...|...+.+ ....+|++|++..-+ ..+-.|+.++
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~i~SRc~~i 169 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQF 169 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChhHhhhhccc
Confidence 35999999964 888888888888876 356889999887554 3344555443
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=85.44 E-value=0.14 Score=47.98 Aligned_cols=28 Identities=43% Similarity=0.585 Sum_probs=24.2
Q ss_pred EEecCCEEEEECCCCCcHHHHHHHHhCC
Q 008750 446 TIERGEKTAIIGPNGCGKSTLLKLIMGL 473 (555)
Q Consensus 446 ~i~~Ge~iaI~G~NGsGKSTLlk~L~G~ 473 (555)
=|+.|.++-|.||.|||||||.-.++..
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~ 80 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQ 80 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHH
Confidence 4678999999999999999988777654
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.39 E-value=0.19 Score=47.15 Aligned_cols=37 Identities=14% Similarity=0.214 Sum_probs=24.9
Q ss_pred hccCCCEEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEE
Q 008750 274 LLQDPDLLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVII 312 (555)
Q Consensus 274 L~~~p~lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIii 312 (555)
-+.+.-||++| +..|.-+.++..+ +..++++...|+.
T Consensus 93 ~~~D~avlVvd-a~~Gv~~~T~~~w-~~a~~~~lP~i~f 129 (276)
T d2bv3a2 93 RVLDGAIVVFD-SSQGVEPQSETVW-RQAEKYKVPRIAF 129 (276)
T ss_dssp HHCCEEEEEEE-TTTSSCHHHHHHH-HHHHTTTCCEEEE
T ss_pred HhhhheEEecc-ccCCcchhHHHHH-HHHHHcCCCEEEE
Confidence 45677788887 8889888887755 4444566654443
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=85.25 E-value=0.21 Score=44.88 Aligned_cols=41 Identities=22% Similarity=0.111 Sum_probs=27.0
Q ss_pred ccCCCEEEEcCCCCCC-CHHHHHHHHHH---HcCCCceEEEEecC
Q 008750 275 LQDPDLLLLDEPTNHL-DLDTIEWLEGY---LGKQDVPMVIISHD 315 (555)
Q Consensus 275 ~~~p~lLlLDEPTs~L-D~~~~~~l~~~---l~~~~~tvIiiSHd 315 (555)
+.+.++|++|+--.-. +......|..+ +.+.|+.+|++|..
T Consensus 95 ~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~ 139 (213)
T d1l8qa2 95 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDR 139 (213)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred HhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCC
Confidence 5578999999864332 24445555554 44578888888874
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=85.25 E-value=0.22 Score=44.45 Aligned_cols=52 Identities=10% Similarity=0.074 Sum_probs=36.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHcCC--CceEEEEecCHHH-HHhhcceeEEe
Q 008750 277 DPDLLLLDEPTNHLDLDTIEWLEGYLGKQ--DVPMVIISHDRAF-LDQLCTKIVET 329 (555)
Q Consensus 277 ~p~lLlLDEPTs~LD~~~~~~l~~~l~~~--~~tvIiiSHd~~~-l~~~~dri~~l 329 (555)
+.+|+|+||. -.|...+...|...+.+. +.-+|++|+++.- +..+-.|+..+
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i 162 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLH 162 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEE
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEE
Confidence 3579999975 346678888899999864 4567888999863 33355666544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.04 E-value=0.18 Score=45.59 Aligned_cols=22 Identities=50% Similarity=0.534 Sum_probs=19.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~ 146 (555)
++.|.|-=|||||||++-+...
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999988764
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.78 E-value=0.3 Score=46.75 Aligned_cols=35 Identities=20% Similarity=0.167 Sum_probs=26.8
Q ss_pred eeeeeeEEEECCCEEEEEcCCCccHHHHHHHHHcCC
Q 008750 112 VLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 112 vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
++.-+-..+++| ++.++||.|+|||.|.+.|++..
T Consensus 113 ~~~~~~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 113 VAEFGGHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEETTEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred HHHHhhcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 344444566666 66678999999999999999864
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.63 E-value=0.18 Score=49.92 Aligned_cols=34 Identities=24% Similarity=0.268 Sum_probs=23.1
Q ss_pred CEEEEECCCCCcHHHHHHHHh-CCCCCCceEEEEC
Q 008750 451 EKTAIIGPNGCGKSTLLKLIM-GLEKPRGGEVLLG 484 (555)
Q Consensus 451 e~iaI~G~NGsGKSTLlk~L~-G~~~p~~G~v~~~ 484 (555)
.++.|+|+.|||||++++.|+ .......+.|.++
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 479999999999999987543 3333323444454
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=84.46 E-value=0.21 Score=49.42 Aligned_cols=43 Identities=19% Similarity=0.115 Sum_probs=33.9
Q ss_pred EEEEcCCCCCCCHHHHHHHHHHHcCCCceEEEEecCHHHHHhh
Q 008750 280 LLLLDEPTNHLDLDTIEWLEGYLGKQDVPMVIISHDRAFLDQL 322 (555)
Q Consensus 280 lLlLDEPTs~LD~~~~~~l~~~l~~~~~tvIiiSHd~~~l~~~ 322 (555)
++++||.-+-........+....+++|..+++++.+++.+...
T Consensus 279 ~l~lDE~~~~~~~~~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~~~ 321 (433)
T d1e9ra_ 279 WLFIDELASLEKLASLADALTKGRKAGLRVVAGLQSTSQLDDV 321 (433)
T ss_dssp EEEESCGGGSCBCSSHHHHHHHCTTTTEEEEEEESCHHHHHHH
T ss_pred EEEechHhhhcccHHHHHHHHHhCCCCceEEEEeccHHHHHHH
Confidence 6888998777665556666667788999999999998887553
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.39 E-value=0.22 Score=47.71 Aligned_cols=29 Identities=17% Similarity=0.253 Sum_probs=23.2
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHhCCC
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
..+.+| .+.++||.|||||.|.+.|++..
T Consensus 119 ~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 119 HRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred cccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 445555 56678999999999999999863
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=84.31 E-value=0.13 Score=48.63 Aligned_cols=33 Identities=18% Similarity=0.237 Sum_probs=26.9
Q ss_pred eeeeeeeEEEECCCEEEEEcCCCccHHHHHHHHH
Q 008750 111 TVLKDVTWEVKKGEKVGLVGVNGAGKTTQLRIIA 144 (555)
Q Consensus 111 ~vL~~vsl~i~~Ge~~~lvG~NGsGKSTLlk~i~ 144 (555)
.++ |.-+.|-+|++++|+|+.|+|||||+.-++
T Consensus 57 raI-D~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 57 KAV-DSLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHH-HHHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred eEE-ecccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 344 345789999999999999999999986554
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=83.94 E-value=0.24 Score=47.72 Aligned_cols=25 Identities=28% Similarity=0.244 Sum_probs=22.3
Q ss_pred EEEEEcCCCccHHHHHHHHHcCCCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQEEP 149 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~~p 149 (555)
+|+|=|.-||||||+++.|+-.+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999987754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.90 E-value=0.28 Score=43.48 Aligned_cols=21 Identities=24% Similarity=0.540 Sum_probs=18.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
-+.|+|+.|+|||+++.-|+.
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ 65 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQ 65 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHH
Confidence 468999999999999988864
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=83.38 E-value=0.23 Score=47.82 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.4
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
+|+|=|+-||||||+++.|+..+
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l 28 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALG 28 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC--
T ss_pred EEEEECCcCCCHHHHHHHHHHHh
Confidence 48899999999999999998654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.15 E-value=0.3 Score=45.59 Aligned_cols=21 Identities=19% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
-+.|+|+.|+|||++++-++.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ 61 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAW 61 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHH
Confidence 568999999999999988874
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.13 E-value=0.32 Score=43.13 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=19.5
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
-+.|||+.|.|||++..-|+-.+
T Consensus 45 n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 45 NPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEecCCcccHHHHHHHHHHH
Confidence 36799999999999998888543
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=82.86 E-value=0.29 Score=43.36 Aligned_cols=21 Identities=38% Similarity=0.408 Sum_probs=19.2
Q ss_pred EEEEcCCCccHHHHHHHHHcC
Q 008750 126 VGLVGVNGAGKTTQLRIIAGQ 146 (555)
Q Consensus 126 ~~lvG~NGsGKSTLlk~i~G~ 146 (555)
+||+|.-++|||||+..|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 799999999999999998764
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=82.26 E-value=0.34 Score=45.19 Aligned_cols=23 Identities=35% Similarity=0.291 Sum_probs=19.8
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
-+.|||+.|+|||+++.-++-.+
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHH
Confidence 56899999999999999888643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=81.75 E-value=0.4 Score=43.30 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 008750 453 TAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 453 iaI~G~NGsGKSTLlk~L~ 471 (555)
|+++|.-.+|||||+..|+
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 7999999999999999995
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.75 E-value=0.33 Score=42.96 Aligned_cols=21 Identities=33% Similarity=0.382 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMG 472 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G 472 (555)
.|||+|.-.+|||||+..|.+
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~ 25 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITK 25 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 489999999999999999975
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=81.02 E-value=0.36 Score=43.48 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=18.1
Q ss_pred EEEEECCCCCcHHHHHHHHh
Q 008750 452 KTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~ 471 (555)
.|+|+|.-++|||||+..|.
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 48999999999999999884
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.91 E-value=0.35 Score=46.17 Aligned_cols=23 Identities=30% Similarity=0.525 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 008750 452 KTAIIGPNGCGKSTLLKLIMGLE 474 (555)
Q Consensus 452 ~iaI~G~NGsGKSTLlk~L~G~~ 474 (555)
.+.++||+|+|||.|.+.|+..+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 47789999999999999998654
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.81 E-value=0.22 Score=47.00 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=24.4
Q ss_pred EEEecCCEEEEECCCCCcHHHHHHHHh
Q 008750 445 LTIERGEKTAIIGPNGCGKSTLLKLIM 471 (555)
Q Consensus 445 l~i~~Ge~iaI~G~NGsGKSTLlk~L~ 471 (555)
+.|-+|.+++|.|+.|+|||||+.-++
T Consensus 63 ~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 63 VPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp SCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cCccCCCEEEeecCCCCChHHHHHHHH
Confidence 789999999999999999999986554
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=80.23 E-value=0.33 Score=46.32 Aligned_cols=23 Identities=26% Similarity=0.378 Sum_probs=20.6
Q ss_pred EEEEEcCCCccHHHHHHHHHcCC
Q 008750 125 KVGLVGVNGAGKTTQLRIIAGQE 147 (555)
Q Consensus 125 ~~~lvG~NGsGKSTLlk~i~G~~ 147 (555)
.+.++||+|+|||.|.+.|+-.+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 47789999999999999999765
|