Citrus Sinensis ID: 008762

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550----
MGSQAWLKVLLFGFCFWLSSRSSSSSSLSILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILPACS
ccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccEEEEEEccccccccccccEEEEEEcccccccccccccccccccccccccccHHHHHHHHHccccEEEEccccccEEEEcccccccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccEEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccccccEEEccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccEEEccccccHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccEEcccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEcccccccccccccccccccHHHHHHHHHHHHHcccEEEEEccccccEEEEEEEEEccccEEEEEEEccccccEEEEEEEccccccccccccccEEEEEccccccccccEEEEEEEcccccccccEEEEccccccccccccccccccEEccccccEEEcccEEEEEEEccccccccc
ccHHHHHHHHHHHHHHHHHHHHHHcccHHHHccccccccccccEEEEEcccccEEEEcccEEEEEEEcccccHccccccccccccccccccccHHHHHHHHHccccEEEEccccccEEEEccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccEcEEEEcccccccccccEEcHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccEEEEEEEEEccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEccccccccccccccccHHHHHHHHHHHccccEEEEEcccccEEEEEEEEccccccEEEEEEEEccccEEEEEEEEccccccccEEEEcccccccccccccccccEEEEEEccccccccccEEEEccEEEEEcccccccccccEEccccccEEEcccEEEEEEEccccccccc
MGSQAWLKVLLFGFCFwlssrssssssLSILQAEAaggagfvggnvfidrrsvigrtdddfvcatldwwppekcdygtcswdrasllnldlNSNILLNAVKAfsplkirlggtlqdkviydtednrqpckqfvknssemfgftqgclpmhRWDELNAFfkksgcpciqFRAKIVFGLnaltgrsiqndgsvkgawdytnaeSFISYTVKKNYSIHGWElgnelcgngvGTRVAAAQYATDTISLRNVVQKIytgvdskpliiapggffdaKWFKEFLDksgqsldvathhiynlgpgvdqhLVEKIldplyldrevdTFSQLENTLKSSATSAVAWVgesggaynsghnlvtNAFVFSFWYLDQlgmaaahdTKTYCRqsliggnygllntttfvpnpdyYSALLWHRLMgrnalstsfsgtKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFngtltsrhkhkSLKMKIIklpqasvggnereeyhltakdgdlhsqtmllngnilsvnsigdiptleplrvkstqpvsvgpfSIVFvhmphvilpacs
MGSQAWLKVLLFGFCFWLSSRSSSSSSLSILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCatldwwppekCDYGTCSWDRASLLNLDLNSNILLNAVKAfsplkirlggtlQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGrsiqndgsvkgawdYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFngtltsrhkhkslkMKIIKlpqasvggnEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILPACS
MGSQAWLKVLLFGFCFWlssrsssssslsILQaeaaggagfvggNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASllnldlnsnillnAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILPACS
****AWLKVLLFGFCFWLS**********ILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHK**SLKMKIIKL*************HLTA**GDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILP***
*******KVLLFGFCFWLSSRSSSSSSLSILQAE*****GFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNAL*T**SGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKS************VGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILPACS
MGSQAWLKVLLFGFCFWLSS*********ILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILPACS
*GSQAWLKVLLFGFCFWLSSRSSSSSSLSILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILPAC*
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MGSQAWLKVLLFGFCFWLSSRSSSSSSLSILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILPACS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query554 2.2.26 [Sep-21-2011]
Q9FZP1536 Heparanase-like protein 3 yes no 0.909 0.940 0.660 0.0
Q8L608539 Heparanase-like protein 2 no no 0.904 0.929 0.497 1e-148
Q9FF10543 Heparanase-like protein 1 no no 0.907 0.926 0.486 1e-143
Q9LRC8527 Baicalin-beta-D-glucuroni N/A no 0.907 0.954 0.410 1e-126
Q9Y251543 Heparanase OS=Homo sapien yes no 0.759 0.775 0.270 8e-25
Q9MYY0545 Heparanase OS=Bos taurus yes no 0.754 0.766 0.255 1e-24
Q71RP1536 Heparanase OS=Rattus norv yes no 0.770 0.796 0.255 4e-24
Q6YGZ1535 Heparanase OS=Mus musculu yes no 0.770 0.798 0.251 5e-24
Q90YK5523 Heparanase OS=Gallus gall yes no 0.644 0.682 0.266 8e-24
Q8WWQ2592 Inactive heparanase-2 OS= no no 0.574 0.537 0.253 3e-16
>sp|Q9FZP1|HPSE3_ARATH Heparanase-like protein 3 OS=Arabidopsis thaliana GN=At5g34940 PE=2 SV=2 Back     alignment and function desciption
 Score =  739 bits (1909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/513 (66%), Positives = 419/513 (81%), Gaps = 9/513 (1%)

Query: 44  GNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAF 103
           G VF+  R+ +G  D+DF+CATLDWWPPEKCDYG+CSWD AS+LNLDLN+ IL NA+KAF
Sbjct: 31  GTVFVYGRAAVGTIDEDFICATLDWWPPEKCDYGSCSWDHASILNLDLNNVILQNAIKAF 90

Query: 104 SPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSG 163
           +PLKIR+GGTLQD VIY+T D++QPC  F KNSS +FG+TQGCLPM RWDELNAFF+K+G
Sbjct: 91  APLKIRIGGTLQDIVIYETPDSKQPCLPFTKNSSILFGYTQGCLPMRRWDELNAFFRKTG 150

Query: 164 CPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNEL 223
                   K++FGLNAL+GRSI+++G   GAW+YTNAESFI +T + NY+I GWELGNEL
Sbjct: 151 -------TKVIFGLNALSGRSIKSNGEAIGAWNYTNAESFIRFTAENNYTIDGWELGNEL 203

Query: 224 CGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQS 283
           CG+GVG RV A QYA DTI+LRN+V ++Y  V   PL+I PGGFF+  WF E+L+K+  S
Sbjct: 204 CGSGVGARVGANQYAIDTINLRNIVNRVYKNVSPMPLVIGPGGFFEVDWFTEYLNKAENS 263

Query: 284 LDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGA 343
           L+  T HIY+LGPGVD+HL+EKIL+P YLD+E  +F  L+N +K+S+T AVAWVGESGGA
Sbjct: 264 LNATTRHIYDLGPGVDEHLIEKILNPSYLDQEAKSFRSLKNIIKNSSTKAVAWVGESGGA 323

Query: 344 YNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSA 403
           YNSG NLV+NAFV+SFWYLDQLGMA+ +DTKTYCRQSLIGGNYGLLNTT F PNPDYYSA
Sbjct: 324 YNSGRNLVSNAFVYSFWYLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYYSA 383

Query: 404 LLWHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTS 463
           L+W +LMGR AL T+FSGTKKIRSY HCA+QSKG+ +LL+NLDN+TTV A V  N + + 
Sbjct: 384 LIWRQLMGRKALFTTFSGTKKIRSYTHCARQSKGITVLLMNLDNTTTVVAKVELNNSFSL 443

Query: 464 RH-KH-KSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPT 521
           RH KH KS K    +L     G  +REEYHLTAKDG+LHSQTMLLNGN L VNS+GD+P 
Sbjct: 444 RHTKHMKSYKRASSQLFGGPNGVIQREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPP 503

Query: 522 LEPLRVKSTQPVSVGPFSIVFVHMPHVILPACS 554
           +EP+ + ST+P+++ P+SIVFVHM +V++PAC+
Sbjct: 504 IEPIHINSTEPITIAPYSIVFVHMRNVVVPACA 536
Endoglycosidase which is a cell surface and extracellular matrix-degrading enzyme. Cleaves heparan sulfate proteoglycans (HSPGs) into heparan sulfate side chains and core proteoglycans.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: -EC: .EC: -
>sp|Q8L608|HPSE2_ARATH Heparanase-like protein 2 OS=Arabidopsis thaliana GN=At5g61250 PE=2 SV=1 Back     alignment and function description
>sp|Q9FF10|HPSE1_ARATH Heparanase-like protein 1 OS=Arabidopsis thaliana GN=At5g07830 PE=2 SV=1 Back     alignment and function description
>sp|Q9LRC8|BAGLU_SCUBA Baicalin-beta-D-glucuronidase OS=Scutellaria baicalensis GN=SGUS PE=1 SV=1 Back     alignment and function description
>sp|Q9Y251|HPSE_HUMAN Heparanase OS=Homo sapiens GN=HPSE PE=1 SV=2 Back     alignment and function description
>sp|Q9MYY0|HPSE_BOVIN Heparanase OS=Bos taurus GN=HPSE PE=2 SV=2 Back     alignment and function description
>sp|Q71RP1|HPSE_RAT Heparanase OS=Rattus norvegicus GN=Hpse PE=2 SV=1 Back     alignment and function description
>sp|Q6YGZ1|HPSE_MOUSE Heparanase OS=Mus musculus GN=Hpse PE=1 SV=3 Back     alignment and function description
>sp|Q90YK5|HPSE_CHICK Heparanase OS=Gallus gallus GN=HPSE PE=1 SV=1 Back     alignment and function description
>sp|Q8WWQ2|HPSE2_HUMAN Inactive heparanase-2 OS=Homo sapiens GN=HPSE2 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
296084540533 unnamed protein product [Vitis vinifera] 0.960 0.998 0.732 0.0
224142519506 predicted protein [Populus trichocarpa] 0.907 0.994 0.766 0.0
225446203559 PREDICTED: heparanase-like protein 3-lik 0.972 0.964 0.707 0.0
255586003551 heparanase, putative [Ricinus communis] 0.969 0.974 0.740 0.0
147862366636 hypothetical protein VITISV_038549 [Viti 0.972 0.847 0.704 0.0
224120298547 predicted protein [Populus trichocarpa] 0.895 0.906 0.746 0.0
449443025539 PREDICTED: heparanase-like protein 3-lik 0.963 0.990 0.689 0.0
449493641539 PREDICTED: LOW QUALITY PROTEIN: heparana 0.963 0.990 0.687 0.0
356530575538 PREDICTED: heparanase-like protein 3-lik 0.967 0.996 0.662 0.0
356556531538 PREDICTED: heparanase-like protein 3-lik 0.962 0.990 0.669 0.0
>gi|296084540|emb|CBI25561.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  832 bits (2149), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/542 (73%), Positives = 452/542 (83%), Gaps = 10/542 (1%)

Query: 12  FGFCFWLSSRSSSSSSLSILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPP 71
            G CFW+   S S    S + A+ AGG   V G VFID ++ IG+ D+DFVCATLDWWPP
Sbjct: 1   MGLCFWVFVFSYS---FSTVNADTAGGGANVEGTVFIDGKAHIGKIDNDFVCATLDWWPP 57

Query: 72  EKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQ 131
           EKCDYGTCSW  ASLLNLDLN+ ILLNA+KAF+PLK+RLGGTLQDKVIYDTED+R PC  
Sbjct: 58  EKCDYGTCSWGHASLLNLDLNNKILLNAIKAFTPLKLRLGGTLQDKVIYDTEDHRLPCTH 117

Query: 132 FVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSV 191
           FV+N+S++FGFTQGCLP++RWDELN FFK SG       A I+FGLNAL+GRSI+ DGS 
Sbjct: 118 FVQNTSQLFGFTQGCLPLYRWDELNTFFKNSG-------AVIIFGLNALSGRSIRPDGSA 170

Query: 192 KGAWDYTNAESFISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKI 251
            GAWD +NAES I YTVKK Y I  WELGNEL GNGVGTRVAA QYA+DTISLRN+VQ I
Sbjct: 171 VGAWDSSNAESLIRYTVKKGYDISAWELGNELSGNGVGTRVAANQYASDTISLRNLVQDI 230

Query: 252 YTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLY 311
           Y+GV+ KP IIAPGGFFD  WFKEFLDK+ +SLDV THHIYNLGPGVD HL+EKILDP Y
Sbjct: 231 YSGVEPKPQIIAPGGFFDQNWFKEFLDKTTKSLDVITHHIYNLGPGVDTHLIEKILDPSY 290

Query: 312 LDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAH 371
           LD E +TFS+L++T+ SSA+SA +WVGE+GGAYNSG NLVTNAFVFSFWYLDQLGMA+A+
Sbjct: 291 LDGEANTFSRLQSTINSSASSATSWVGEAGGAYNSGRNLVTNAFVFSFWYLDQLGMASAY 350

Query: 372 DTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALLWHRLMGRNALSTSFSGTKKIRSYAHC 431
           DTKTYCRQ+LIGGNYGLLNT TFVPNPDYYSALLWHRLMGRN LSTSFSG KKIR+YAHC
Sbjct: 351 DTKTYCRQTLIGGNYGLLNTNTFVPNPDYYSALLWHRLMGRNVLSTSFSGPKKIRAYAHC 410

Query: 432 AKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYH 491
           AKQS+G+ LLLINLDNSTTV A VAFNGT T +HKHK  + K+I    +     EREEYH
Sbjct: 411 AKQSQGITLLLINLDNSTTVEAKVAFNGTSTLQHKHKLHRTKVIWFEGSKTSEMEREEYH 470

Query: 492 LTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKSTQPVSVGPFSIVFVHMPHVILP 551
           LTAKDG+LHSQTMLLNGNIL+VN+ GDIP LEPL V S+ P+++ PFSIVFVHMP V+LP
Sbjct: 471 LTAKDGNLHSQTMLLNGNILTVNASGDIPPLEPLNVNSSSPITIAPFSIVFVHMPSVVLP 530

Query: 552 AC 553
           AC
Sbjct: 531 AC 532

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224142519|ref|XP_002324603.1| predicted protein [Populus trichocarpa] gi|222866037|gb|EEF03168.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225446203|ref|XP_002263173.1| PREDICTED: heparanase-like protein 3-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255586003|ref|XP_002533671.1| heparanase, putative [Ricinus communis] gi|223526439|gb|EEF28717.1| heparanase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|147862366|emb|CAN81917.1| hypothetical protein VITISV_038549 [Vitis vinifera] Back     alignment and taxonomy information
>gi|224120298|ref|XP_002331013.1| predicted protein [Populus trichocarpa] gi|222872943|gb|EEF10074.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449443025|ref|XP_004139281.1| PREDICTED: heparanase-like protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449493641|ref|XP_004159389.1| PREDICTED: LOW QUALITY PROTEIN: heparanase-like protein 3-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356530575|ref|XP_003533856.1| PREDICTED: heparanase-like protein 3-like [Glycine max] Back     alignment and taxonomy information
>gi|356556531|ref|XP_003546578.1| PREDICTED: heparanase-like protein 3-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query554
TAIR|locus:2183542536 GUS3 "AT5G34940" [Arabidopsis 0.906 0.936 0.643 6.2e-188
TAIR|locus:2163243539 GUS1 "AT5G61250" [Arabidopsis 0.900 0.925 0.493 3.4e-132
TAIR|locus:2142768543 GUS2 "AT5G07830" [Arabidopsis 0.886 0.904 0.488 5.2e-129
UNIPROTKB|Q9LRC8527 SGUS "Baicalin-beta-D-glucuron 0.709 0.745 0.448 4.3e-113
UNIPROTKB|F1RVE1542 HPSE "Uncharacterized protein" 0.626 0.640 0.292 9.5e-28
ZFIN|ZDB-GENE-041111-200546 hpse "heparanase" [Danio rerio 0.635 0.644 0.292 1.6e-26
UNIPROTKB|E2RST8545 HPSE "Uncharacterized protein" 0.633 0.644 0.280 4.5e-26
UNIPROTKB|Q9Y251543 HPSE "Heparanase" [Homo sapien 0.474 0.484 0.321 5.3e-25
UNIPROTKB|Q90YK5523 HPSE "Heparanase" [Gallus gall 0.501 0.531 0.302 9.8e-24
UNIPROTKB|F1N1G1545 HPSE "Heparanase" [Bos taurus 0.673 0.684 0.277 1.5e-23
TAIR|locus:2183542 GUS3 "AT5G34940" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1822 (646.4 bits), Expect = 6.2e-188, P = 6.2e-188
 Identities = 329/511 (64%), Positives = 407/511 (79%)

Query:    46 VFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASXXXXXXXXXXXXXAVKAFSP 105
             VF+  R+ +G  D+DF+CATLDWWPPEKCDYG+CSWD AS             A+KAF+P
Sbjct:    33 VFVYGRAAVGTIDEDFICATLDWWPPEKCDYGSCSWDHASILNLDLNNVILQNAIKAFAP 92

Query:   106 LKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCP 165
             LKIR+GGTLQD VIY+T D++QPC  F KNSS +FG+TQGCLPM RWDELNAFF+K+G  
Sbjct:    93 LKIRIGGTLQDIVIYETPDSKQPCLPFTKNSSILFGYTQGCLPMRRWDELNAFFRKTG-- 150

Query:   166 CIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNELCG 225
                   K++FGLNAL+GRSI+++G   GAW+YTNAESFI +T + NY+I GWELGNELCG
Sbjct:   151 -----TKVIFGLNALSGRSIKSNGEAIGAWNYTNAESFIRFTAENNYTIDGWELGNELCG 205

Query:   226 NGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQSLD 285
             +GVG RV A QYA DTI+LRN+V ++Y  V   PL+I PGGFF+  WF E+L+K+  SL+
Sbjct:   206 SGVGARVGANQYAIDTINLRNIVNRVYKNVSPMPLVIGPGGFFEVDWFTEYLNKAENSLN 265

Query:   286 VATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYN 345
               T HIY+LGPGVD+HL+EKIL+P YLD+E  +F  L+N +K+S+T AVAWVGESGGAYN
Sbjct:   266 ATTRHIYDLGPGVDEHLIEKILNPSYLDQEAKSFRSLKNIIKNSSTKAVAWVGESGGAYN 325

Query:   346 SGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTTFVPNPDYYSALL 405
             SG NLV+NAFV+SFWYLDQLGMA+ +DTKTYCRQSLIGGNYGLLNTT F PNPDYYSAL+
Sbjct:   326 SGRNLVSNAFVYSFWYLDQLGMASLYDTKTYCRQSLIGGNYGLLNTTNFTPNPDYYSALI 385

Query:   406 WHRLMGRNALSTSFSGTKKIRSYAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRH 465
             W +LMGR AL T+FSGTKKIRSY HCA+QSKG+ +LL+NLDN+TTV A V  N + + RH
Sbjct:   386 WRQLMGRKALFTTFSGTKKIRSYTHCARQSKGITVLLMNLDNTTTVVAKVELNNSFSLRH 445

Query:   466 -KH-KSLKMKIIKLPQASVGGNEREEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLE 523
              KH KS K    +L     G  +REEYHLTAKDG+LHSQTMLLNGN L VNS+GD+P +E
Sbjct:   446 TKHMKSYKRASSQLFGGPNGVIQREEYHLTAKDGNLHSQTMLLNGNALQVNSMGDLPPIE 505

Query:   524 PLRVKSTQPVSVGPFSIVFVHMPHVILPACS 554
             P+ + ST+P+++ P+SIVFVHM +V++PAC+
Sbjct:   506 PIHINSTEPITIAPYSIVFVHMRNVVVPACA 536
GO:0004566 "beta-glucuronidase activity" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0016020 "membrane" evidence=IEA
GO:0016798 "hydrolase activity, acting on glycosyl bonds" evidence=IEA
GO:0009505 "plant-type cell wall" evidence=IDA
TAIR|locus:2163243 GUS1 "AT5G61250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2142768 GUS2 "AT5G07830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q9LRC8 SGUS "Baicalin-beta-D-glucuronidase" [Scutellaria baicalensis (taxid:65409)] Back     alignment and assigned GO terms
UNIPROTKB|F1RVE1 HPSE "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041111-200 hpse "heparanase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RST8 HPSE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9Y251 HPSE "Heparanase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q90YK5 HPSE "Heparanase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1N1G1 HPSE "Heparanase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9FZP1HPSE3_ARATH3, ., 2, ., -, ., -0.66080.90970.9402yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
pfam03662320 pfam03662, Glyco_hydro_79n, Glycosyl hydrolase fam 0.0
>gnl|CDD|190706 pfam03662, Glyco_hydro_79n, Glycosyl hydrolase family 79, N-terminal domain Back     alignment and domain information 
 Score =  568 bits (1467), Expect = 0.0
 Identities = 218/324 (67%), Positives = 250/324 (77%), Gaps = 8/324 (2%)

Query: 44  GNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAF 103
             V +D R  I  TD++FVCATLDWWPPEKCDYG C W  ASLLNLDLN+ ILLNA+KAF
Sbjct: 4   ATVVVDGRRAIAETDENFVCATLDWWPPEKCDYGQCPWGLASLLNLDLNNPILLNAIKAF 63

Query: 104 SPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSG 163
           +PLKIRLGG+LQD+VIYDT D + PC  F KN+S +FGF+QGCLPM RWDELNAFF+K+G
Sbjct: 64  APLKIRLGGSLQDQVIYDTGDLKTPCTPFTKNTSGLFGFSQGCLPMDRWDELNAFFQKTG 123

Query: 164 CPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSIHGWELGNEL 223
                  A I FGLNAL GR+    G+  GAWDYTNAESFI YTV K Y I  WELGNEL
Sbjct: 124 -------AIITFGLNALRGRNKLPKGTWGGAWDYTNAESFIRYTVSKGYKIDSWELGNEL 176

Query: 224 CGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQS 283
            G+GVG RV+A QYA D I L+N+V+ +Y  V  KPL+IAPGGFFD +WF E LDK+G S
Sbjct: 177 SGSGVGARVSAEQYAKDLIKLKNLVKDVYQNVRPKPLVIAPGGFFDQQWFTELLDKTGPS 236

Query: 284 -LDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGG 342
            LDV THHIYNLGPGVD HL+EKILDP YLD E  TFS L+  ++S  T AVAWVGE+GG
Sbjct: 237 VLDVLTHHIYNLGPGVDPHLIEKILDPSYLDGEAKTFSDLQQIIQSHGTWAVAWVGEAGG 296

Query: 343 AYNSGHNLVTNAFVFSFWYLDQLG 366
           AYNSG NLV+N F+ SFWYLDQLG
Sbjct: 297 AYNSGGNLVSNTFINSFWYLDQLG 320

Family of endo-beta-N-glucuronidase, or heparanase. Heparan sulfate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulfate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular micro-environment. Heparanase degrades HS at specific intra-chain sites. The enzyme is synthesised as a latent approximately 65 kDa protein that is processed at the N-terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumour cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity. Length = 320

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 554
PF03662319 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-t 100.0
COG3534501 AbfA Alpha-L-arabinofuranosidase [Carbohydrate tra 100.0
PF01229486 Glyco_hydro_39: Glycosyl hydrolases family 39; Int 99.39
smart00813189 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminu 98.99
PF11790239 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; 98.65
PF06964177 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-termin 98.63
PF02055496 Glyco_hydro_30: O-Glycosyl hydrolase family 30; In 98.4
PF00150281 Cellulase: Cellulase (glycosyl hydrolase family 5) 98.26
COG5520433 O-Glycosyl hydrolase [Cell envelope biogenesis, ou 98.07
PF12891239 Glyco_hydro_44: Glycoside hydrolase family 44; Int 98.03
PF07745332 Glyco_hydro_53: Glycosyl hydrolase family 53; Inte 97.91
PF1287688 Cellulase-like: Sugar-binding cellulase-like; Inte 97.64
smart00633254 Glyco_10 Glycosyl hydrolase family 10. 97.01
COG3867403 Arabinogalactan endo-1,4-beta-galactosidase [Carbo 96.82
COG3664428 XynB Beta-xylosidase [Carbohydrate transport and m 95.73
PRK10150604 beta-D-glucuronidase; Provisional 94.49
PF14587384 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; P 94.43
PF02836298 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM 93.8
PF00332310 Glyco_hydro_17: Glycosyl hydrolases family 17; Int 88.1
PF03198314 Glyco_hydro_72: Glucanosyltransferase; InterPro: I 86.57
COG5309305 Exo-beta-1,3-glucanase [Carbohydrate transport and 84.19
PF00331320 Glyco_hydro_10: Glycosyl hydrolase family 10; Inte 81.15
>PF03662 Glyco_hydro_79n: Glycosyl hydrolase family 79, N-terminal domain ; InterPro: IPR005199 O-Glycosyl hydrolases 3 Back     alignment and domain information 
Probab=100.00  E-value=3.1e-77  Score=604.79  Aligned_cols=317  Identities=55%  Similarity=1.053  Sum_probs=155.0

Q ss_pred             eeEEEecCCCcccccCCceeEEEeccCCCCCCCCCCcccccccccccCCCcHHHHHHHHHcCCCeEecCCcccceEeeec
Q 008762           43 GGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRLGGTLQDKVIYDT  122 (554)
Q Consensus        43 ~~~v~I~~~~~~~~i~~~f~g~sie~wp~~~~~y~~~~~~~~sl~~~~l~~~~L~~l~k~L~p~~LRiGG~~~D~~~~~~  122 (554)
                      .++|.|+...+++++|++|+|+++||||++||+||+|+||++||+|+||+++.|++++|+|+|.+||+||+.||+++|+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~f~catldwwp~~kc~y~~~~w~~as~~nlDL~n~~L~~a~~al~P~~iRvGGslqD~v~Y~~   81 (319)
T PF03662_consen    2 DGTVVVDGSTAIATTDENFVCATLDWWPPSKCDYGQCSWGNASILNLDLSNPILINAAKALSPLYIRVGGSLQDQVIYDT   81 (319)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCccccCCCCcccccccccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHH
Q 008762          123 EDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAES  202 (554)
Q Consensus       123 ~~~~~~~~p~~~~~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~  202 (554)
                      +...++|.|+.++++..|||+++|+++.+||++++|++++|       +++|||||++.|+....++.+.|+|+++||++
T Consensus        82 ~~~~~~c~~~~~~~~~~~~fs~~clt~~rwd~l~~F~~~tG-------~~liFgLNAL~g~~~~~~~~~~g~WnssNA~~  154 (319)
T PF03662_consen   82 GDNKQPCSPFVKNASGLFGFSNGCLTMSRWDELNNFAQKTG-------LKLIFGLNALLGRRQLADRDWDGSWNSSNAQS  154 (319)
T ss_dssp             ------------------------------HHHHHHHHHHT--------EEEEEE-TTTS-HHHHHHHHHHHHHHH-TTT
T ss_pred             cccccccccccccccccccccccccchhHHHHHHHHHHHhC-------CEEEEEecccCCCCCCCCCCcCCCCChHHHHH
Confidence            98888999988888999999999999999999999999999       99999999999864333334568999999999


Q ss_pred             HHHHHHhcCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCCCChHHHHHHHHhcCC
Q 008762          203 FISYTVKKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFKEFLDKSGQ  282 (554)
Q Consensus       203 ~l~y~~~~g~~l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~~~~~w~~~fl~~~~~  282 (554)
                      +++|+.+++|+|++|||||||++++.+.+++++||++|+.+||++|+++|++...+|+++||+++++.+|+++||++.++
T Consensus       155 Ll~Yt~skgy~I~~WELGNEl~g~g~~~~v~a~qyakD~~~Lr~il~~iy~~~~~~P~v~gP~~~~d~~w~~~FL~~~g~  234 (319)
T PF03662_consen  155 LLKYTASKGYNIDSWELGNELNGSGVGASVSAEQYAKDFIQLRKILNEIYKNALPGPLVVGPGGFFDADWLKEFLKASGP  234 (319)
T ss_dssp             EEEEEESS-GGG--------HHHHSSSTT--HHHHHHHH---HHHHHHHHHH-TT---EEEEEESS-GGGHHHHHHHTTT
T ss_pred             HHHHHHHcCCCccccccccccCCCCCCCccCHHHHHHHHHHHHHHHHHHHhcCCCCCeEECCCCCCCHHHHHHHHHhcCC
Confidence            99999999999999999999999878889999999999999999999998876788999999998899999999999998


Q ss_pred             C-CCeEEEEeecCCCCCChhhhhhhcChhhhHHHHHHHHHHHHHHHhcCCCCcEEEeccccccCCCCCCchhHHHHHHHH
Q 008762          283 S-LDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWY  361 (554)
Q Consensus       283 ~-id~vs~H~Y~~~~g~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~~~G~~~vSdtf~aalw~  361 (554)
                      . ||++|||+|++++|.|+.++++|++|.+|+++..+++.+++++++++|++++|+|||+++|++|+++|||||+++|||
T Consensus       235 ~~vD~vT~H~Y~lg~g~d~~l~~~~l~p~~Ld~~~~~~~~~~~~v~~~~p~~~~WlGEtg~Ay~gG~~~vSdtFv~~Fww  314 (319)
T PF03662_consen  235 GVVDAVTWHHYNLGSGRDPALIEDFLNPSYLDTLADTFQKLQQVVQEYGPGKPVWLGETGSAYNGGAPGVSDTFVAGFWW  314 (319)
T ss_dssp             T--SEEEEEEEEE--TT-TT-HHHHTS--HHHHHHHHHHHHH-----HHH---EEEEEEEEESTT--TTTTTSTHHHHHH
T ss_pred             CccCEEEEEecCCCCCchHHHHHHhcChhhhhHHHHHHHHHhhhhcccCCCCCeEEeCcccccCCCCCCccHHHHHHHHH
Confidence            5 999999999998888888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 008762          362 LDQLG  366 (554)
Q Consensus       362 lD~Lg  366 (554)
                      ||+||
T Consensus       315 LDqLG  319 (319)
T PF03662_consen  315 LDQLG  319 (319)
T ss_dssp             HHHH-
T ss_pred             HHhhC
Confidence            99997

2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is a family of endo-beta-N-glucuronidase, or heparanase belonging to glycoside hydrolase family 79 (GH79 from CAZY). Heparan sulphate proteoglycans (HSPGs) play a key role in the self- assembly, insolubility and barrier properties of basement membranes and extracellular matrices. Hence, cleavage of heparan sulphate (HS) affects the integrity and functional state of tissues and thereby fundamental normal and pathological phenomena involving cell migration and response to changes in the extracellular microenvironment. Heparanase degrades HS at specific intrachain sites. The enzyme is synthesized as a latent approximately 65 kDa protein that is processed at the N terminus into a highly active approximately 50 kDa form. Experimental evidence suggests that heparanase may facilitate both tumor cell invasion and neovascularization, both critical steps in cancer progression. The enzyme is also involved in cell migration associated with inflammation and autoimmunity [].; GO: 0016798 hydrolase activity, acting on glycosyl bonds, 0016020 membrane; PDB: 3VNY_A 3VO0_A 3VNZ_A.
>COG3534 AbfA Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF01229 Glyco_hydro_39: Glycosyl hydrolases family 39; InterPro: IPR000514 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00813 Alpha-L-AF_C Alpha-L-arabinofuranosidase C-terminus Back     alignment and domain information
>PF11790 Glyco_hydro_cc: Glycosyl hydrolase catalytic core; InterPro: IPR024655 This entry represents the glycosyl hydrolase catalytic core of a group of uncharacterised proteins Back     alignment and domain information
>PF06964 Alpha-L-AF_C: Alpha-L-arabinofuranosidase C-terminus; InterPro: IPR010720 This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (3 Back     alignment and domain information
>PF02055 Glyco_hydro_30: O-Glycosyl hydrolase family 30; InterPro: IPR001139 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3 Back     alignment and domain information
>COG5520 O-Glycosyl hydrolase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF12891 Glyco_hydro_44: Glycoside hydrolase family 44; InterPro: IPR024745 This is a family of putative bacterial glycoside hydrolases Back     alignment and domain information
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3 Back     alignment and domain information
>smart00633 Glyco_10 Glycosyl hydrolase family 10 Back     alignment and domain information
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3664 XynB Beta-xylosidase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10150 beta-D-glucuronidase; Provisional Back     alignment and domain information
>PF14587 Glyco_hydr_30_2: O-Glycosyl hydrolase family 30; PDB: 3CLW_B Back     alignment and domain information
>PF02836 Glyco_hydro_2_C: Glycosyl hydrolases family 2, TIM barrel domain; InterPro: IPR006103 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF00332 Glyco_hydro_17: Glycosyl hydrolases family 17; InterPro: IPR000490 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF03198 Glyco_hydro_72: Glucanosyltransferase; InterPro: IPR004886 This family is a group of yeast glycolipid proteins anchored to the membrane Back     alignment and domain information
>COG5309 Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF00331 Glyco_hydro_10: Glycosyl hydrolase family 10; InterPro: IPR001000 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
3vny_A488 Crystal Structure Of Beta-Glucuronidase From Acidob 1e-04
>pdb|3VNY|A Chain A, Crystal Structure Of Beta-Glucuronidase From Acidobacterium Capsulatum Length = 488 Back     alignment and structure 
Iteration: 1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 104/265 (39%), Gaps = 40/265 (15%)
Query: 153 DELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNY 212
           + L+ F  K+G        K+++GLN          G+ + A D     +++  T+  + 
Sbjct: 122 NNLSEFLDKTGW-------KLIYGLNL-------GKGTPENAADEA---AYVMETIGAD- 163
Query: 213 SIHGWELGNE---LCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFD 269
            +  ++LGNE      NG+  R A+  +A      +     I   V + P    P   ++
Sbjct: 164 RLLAFQLGNEPDLFYRNGI--RPASYDFAAYAGDWQRFFTAIRKRVPNAPFA-GPDTAYN 220
Query: 270 AKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHL-VEKILDP-LYLDREVDTFSQLENTLK 327
            KW   F DK    +   + H Y  GP  D  + +E+++ P   L  E     Q+E    
Sbjct: 221 TKWLVPFADKFKHDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLGETAGLKQVE---- 276
Query: 328 SSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYG 387
            + T     + E+   Y  G   V++ F  + W  D +   AA  +      +  GG YG
Sbjct: 277 -ADTGLPFRLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGSTGI---NFHGGGYG 332
Query: 388 LLNTTT------FVPNPDYYSALLW 406
                       F+  P+YY  LL+
Sbjct: 333 WYTPVAGTPEDGFIARPEYYGMLLF 357

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query554
3vny_A488 Beta-glucuronidase; TIM barrel, greek-KEY, glycosi 2e-69
3ug3_A504 Alpha-L-arabinofuranosidase; TIM barrel, hydrolase 6e-25
1qw9_A502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 7e-10
2c7f_A513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 4e-08
1uhv_A500 Beta-xylosidase; family 39 glycoside hydrolase, xy 2e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2vrq_A496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 1e-05
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 2e-05
1w91_A503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 3e-04
3ii1_A535 Cellulase; CELM2, glucanase-xyanase, glucanase, xy 4e-04
2y2w_A574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 5e-04
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Length = 488 Back     alignment and structure
 Score =  230 bits (587), Expect = 2e-69
 Identities = 77/538 (14%), Positives = 156/538 (28%), Gaps = 85/538 (15%)

Query: 24  SSSSLSILQAEAAGGAGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDR 83
           +   L+   ++       VG  + +D  ++      D+    L +   +  +        
Sbjct: 4   ARGGLAQTASQTTSSPVRVG--LSVDASALGHTIPPDYT--GLSYEQAQMANPNY----- 54

Query: 84  ASLLNLDLNSNILLNAVKAF-SPLKIRLGGTLQDKVIYDTEDNRQPCKQF--VKNSSEMF 140
                    +  L   ++       +R+GG   +   ++         +           
Sbjct: 55  -----FSGANTQLAGFLRTLGRQGVLRIGGNTSEYTFWNRHAKPTAADEHLAAGPDKGHH 109

Query: 141 GFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNA 200
              +  +     + L+ F  K+G        K+++GLN   G             +  + 
Sbjct: 110 AAAREVITPEAVNNLSEFLDKTG-------WKLIYGLNLGKGTP----------ENAADE 152

Query: 201 ESFISYTVKKNYSIHGWELGNE---LCGNGV-GTRVAAAQYATDTISLRNVVQKIYTGVD 256
            +++  T+  +  +  ++LGNE      NG+       A YA D       ++K      
Sbjct: 153 AAYVMETIGADR-LLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRV---- 207

Query: 257 SKPLIIAPGGFFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREV 316
                  P   ++ KW   F DK    +   + H Y  GP  D  +    ++ L      
Sbjct: 208 PNAPFAGPDTAYNTKWLVPFADKFKHDVKFISSHYYAEGPPTDPSMT---IERLMKPNPR 264

Query: 317 DTFSQLENTLKSSATSAVAWVGESGGAYNSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTY 376
                       + T     + E+   Y  G   V++ F  + W  D +   AA  +   
Sbjct: 265 LLGETAGLKQVEADTGLPFRLTETNSCYQGGKQGVSDTFAAALWAGDLMYQQAAAGS--- 321

Query: 377 CRQSLIGGNYGLLN------TTTFVPNPDYYSALLWHRLMGRNALST---SFSGTKKIRS 427
              +  GG YG            F+  P+YY  LL+ +      L       S    + +
Sbjct: 322 TGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTDNSAAPLLTA 381

Query: 428 YAHCAKQSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNER 487
           YA      +   + L N +    V  +++   + +                         
Sbjct: 382 YALRGTDGR-TRIALFNKNLDADVEVAISGVASPSGTVL--------------------- 419

Query: 488 EEYHLTAKDGDLHSQTMLLNGNILSVNSIGDIPTLEPLRVKS-TQPVSVGPFSIVFVH 544
               L A   D  +      G  +  +        E +   S    + +   S   + 
Sbjct: 420 ---RLEAPRADDTTDVT-FGGAPVGASGSWSPLVQEYVPGHSGQFVLHMRKASGALLE 473
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Length = 504 Back     alignment and structure
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Length = 502 Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Length = 513 Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Length = 500 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Length = 496 Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Length = 591 Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Length = 503 Back     alignment and structure
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A Length = 535 Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Length = 574 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
3vny_A488 Beta-glucuronidase; TIM barrel, greek-KEY, glycosi 100.0
1qw9_A502 Arabinosidase, alpha-L-arabinofuranosidase; hydrol 100.0
2vrq_A496 Alpha-L-arabinofuranosidase; hydrolase, glycosidas 100.0
3ug3_A504 Alpha-L-arabinofuranosidase; TIM barrel, hydrolase 100.0
2c7f_A513 Alpha-L-arabinofuranosidase; glycosidase, xylan, a 100.0
2y2w_A574 Arabinofuranosidase; hydrolase, arabinoxylan, glyc 100.0
2e4t_A519 Endoglucanase, xyloglucanase; TIM barrel, TIM-like 100.0
2yih_A524 CEL44C, xyloglucanase; hydrolase, GH44, endo-gluca 100.0
3ii1_A535 Cellulase; CELM2, glucanase-xyanase, glucanase, xy 99.97
3ik2_A517 Endoglucanase A; TIM-like barrel, hydrolase; 2.20A 99.96
1w91_A503 Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 99.92
4ekj_A500 Beta-xylosidase; TIM-barrel fold, hemicellulase, h 99.89
1uhv_A500 Beta-xylosidase; family 39 glycoside hydrolase, xy 99.85
2y24_A383 Xylanase; hydrolase, GH5 family, aldotetraouronic 99.36
3clw_A507 Conserved exported protein; structural genomics, u 99.26
3kl0_A401 Glucuronoxylanase XYNC; alpha beta barrel, (beta/a 99.15
2nt0_A497 Glucosylceramidase; cerezyme, glucocerebrosidase, 99.12
2wnw_A447 Activated by transcription factor SSRB; hydrolase, 99.06
1ur4_A399 Galactanase; hydrolase, beta-1, glycoside hydrolas 98.74
1fob_A334 Beta-1,4-galactanase; B/A barrel, glycosyl hydrola 98.68
4aw7_A591 GH86A beta-porphyranase; hydrolase, porphyran-hexa 98.65
3aof_A317 Endoglucanase; glycosyl hydrolase family 5, cellul 98.45
1hjs_A332 Beta-1,4-galactanase; 4-galactanases, family 53 gl 98.37
3zr5_A 656 Galactocerebrosidase; hydrolase, GALC, glycosyl hy 98.36
3nco_A320 Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1 98.3
3pzg_A383 Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 98.24
1qnr_A344 Endo-1,4-B-D-mannanase; hydrolase, anomalous scatt 98.12
3pzt_A327 Endoglucanase; alpha/beta barrel, glycosyl hydrola 98.1
3jug_A345 Beta-mannanase; TIM-barrel, glycosidase, hydrolase 98.08
3qho_A458 Endoglucanase, 458AA long hypothetical endo-1,4-be 98.04
1rh9_A373 Endo-beta-mannanase; endo-beta-mannase, retaining, 98.01
4hty_A359 Cellulase; (alpha/beta)8 barrel, family 5 endogluc 97.89
3ndz_A345 Endoglucanase D; cellotriose, xylanase, carbohydra 97.89
2jep_A395 Xyloglucanase; family 5, plant cell WALL, hydrolas 97.88
2whl_A294 Beta-mannanase, baman5; glycoside hydrolase, hydro 97.87
1ceo_A343 Cellulase CELC; glycosyl hydrolase, family A/5 of 97.87
1uuq_A440 Mannosyl-oligosaccharide glucosidase; hydrolase, m 97.85
1bqc_A302 Protein (beta-mannanase); glycosyl hydrolase, fami 97.85
3icg_A515 Endoglucanase D; cellulase, xylanase, carbohydrate 97.79
1wky_A464 Endo-beta-1,4-mannanase; TIM barrel, catalytic dom 97.77
7a3h_A303 Endoglucanase; hydrolase, cellulose degradation, g 97.76
1ece_A358 Endocellulase E1; glycosyl hydrolase; HET: BGC; 2. 97.69
3hn3_A613 Beta-G1, beta-glucuronidase; lysosomal enzyme, aci 97.67
1egz_A291 Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CL 97.65
1vjz_A341 Endoglucanase; TM1752, structural genomics, JCSG, 97.62
4awe_A387 Endo-beta-D-1,4-mannanase; hydrolase, endo-mannana 97.62
1tvn_A293 Cellulase, endoglucanase G; glycoside hydrolase, C 97.61
2cks_A306 Endoglucanase E-5; carbohydrate metabolism, polysa 97.6
3ayr_A376 Endoglucanase; TIM barrel, hydrolase, carbohydrate 97.57
1edg_A380 Endoglucanase A; family A, cellulases, xylanases, 97.45
3l55_A353 B-1,4-endoglucanase/cellulase; putative beta-1,4-e 97.39
1nq6_A302 XYS1; glycoside hydrolase family 10, xylanase, xyl 97.33
1h1n_A305 Endo type cellulase ENGI; hydrolase, glycosyl hydr 97.24
3vup_A351 Beta-1,4-mannanase; TIM barrel, digestive fluid, H 97.17
2osx_A481 Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel 97.17
2w61_A555 GAS2P, glycolipid-anchored surface protein 2; glyc 96.99
1g01_A364 Endoglucanase; alpha/beta barrel, TIM barrel, hydr 96.95
3fn9_A692 Putative beta-galactosidase; structural genomics, 96.94
3civ_A343 Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1. 96.93
3qr3_A340 Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A 96.92
3cui_A315 EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine 96.91
1n82_A331 Xylanase, intra-cellular xylanase; hydrolase; 1.45 96.9
3n9k_A399 Glucan 1,3-beta-glucosidase; aromatic entranceway/ 96.9
1ur1_A378 Endoxylanase; hydrolase, family 10, glycoside hydr 96.82
1h4p_A408 Glucan 1,3-beta-glucosidase I/II; hydrolase, gluca 96.82
2dep_A356 Xylanase B, thermostable celloxylanase; glycosidas 96.72
2y8k_A491 Arabinoxylanase, carbohydrate binding family 6; hy 96.67
1xyz_A347 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrola 96.56
2c0h_A353 Mannan endo-1,4-beta-mannosidase; hydrolase, signa 96.53
3cmg_A667 Putative beta-galactosidase; structural genomics, 96.47
1ta3_B303 Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), 96.46
3lpf_A605 Beta-glucuronidase; alpha/beta barrel, sugar-bindi 96.28
1i1w_A303 Endo-1,4-beta-xylanase; xylan degradation, hydrola 96.13
3ur8_A323 Glucan endo-1,3-beta-D-glucosidase; glucoside hydr 96.1
1v0l_A313 Endo-1,4-beta-xylanase A; glycoside hydrolase fami 96.1
3u7b_A327 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 96.1
3niy_A341 Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.5 96.04
1r85_A379 Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A 95.88
2uwf_A356 Endoxylanase, alkaline active endoxylanase; hydrol 95.72
3em5_A316 Beta-1,3-glucanase; glycoprotein, rossmann fold, ( 95.56
4f8x_A335 Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET 95.53
3emz_A331 Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 ba 95.38
1kwg_A 645 Beta-galactosidase; TIM barrel, glycoside hydrolas 94.67
1us2_A530 Xylanase10C, endo-beta-1,4-xylanase; hydrolase, ca 94.51
3gm8_A 801 Glycoside hydrolase family 2, candidate beta-GLYC; 94.29
1aq0_A306 1,3-1,4-beta-glucanase; hydrolase, glycosidase, gl 94.09
1ghs_A306 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulg 93.41
2cyg_A312 Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (be 93.06
1w32_A348 Endo-1,4-beta-xylanase A precursor; mutant, calciu 92.96
2d1z_A436 Endo-1,4-beta-D-xylanase; TIM-barrel, retaining en 91.84
1yq2_A 1024 Beta-galactosidase; glycosyl hydrolase family 2, T 90.15
2v3g_A283 Endoglucanase H; beta-1 4 beta-1 3 glucanase, lich 87.56
2vx5_A396 Cellvibrio japonicus mannanase cjman26C; hydrolase 84.2
3tp4_A475 Computational design of enzyme; structural genomic 82.32
1odz_A386 Mannanase A; hydrolase, family 26, glycoside-hydro 81.61
4h41_A340 Putative alpha-L-fucosidase; hydrolase, carbohydra 81.09
>3vny_A Beta-glucuronidase; TIM barrel, greek-KEY, glycoside hydrolase family 79, hydrol; 1.50A {Acidobacterium capsulatum} PDB: 3vnz_A* 3vo0_A* Back     alignment and structure
Probab=100.00  E-value=9.3e-69  Score=582.87  Aligned_cols=443  Identities=18%  Similarity=0.246  Sum_probs=356.0

Q ss_pred             CCcceeEEEecCCCcccccCCceeEEEeccCCCCCCCCCCcccccccccc---cCCCcHHHHHHHHHcCC-CeEecCCcc
Q 008762           39 AGFVGGNVFIDRRSVIGRTDDDFVCATLDWWPPEKCDYGTCSWDRASLLN---LDLNSNILLNAVKAFSP-LKIRLGGTL  114 (554)
Q Consensus        39 ~~~~~~~v~I~~~~~~~~i~~~f~g~sie~wp~~~~~y~~~~~~~~sl~~---~~l~~~~L~~l~k~L~p-~~LRiGG~~  114 (554)
                      ....+++|+|++++++++||++|+|++||.               +.+.+   +++.+++|++++|+|+| ++||+|||+
T Consensus        17 ~~~~~~~v~v~~~~~~~~v~~~f~g~~~e~---------------s~i~~~~~~~~~~~~v~~l~k~L~~~~~lR~GG~~   81 (488)
T 3vny_A           17 SSPVRVGLSVDASALGHTIPPDYTGLSYEQ---------------AQMANPNYFSGANTQLAGFLRTLGRQGVLRIGGNT   81 (488)
T ss_dssp             -CCEEEEEEEEEEEEEEEECTTCCEEEEEG---------------GGGGCTTTSSTTCHHHHHHHHHHCSSCEEEEESGG
T ss_pred             CCCCcEEEEEcCCCCCCccCccceEeeeeH---------------hhccCccccCcCCHHHHHHHHHhCCCeEEEeCccc
Confidence            367889999999999999999999999993               23333   46778999999999999 999999999


Q ss_pred             cceEeeecCCCCCccCccc-cCCCCcc-cccccccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCC
Q 008762          115 QDKVIYDTEDNRQPCKQFV-KNSSEMF-GFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVK  192 (554)
Q Consensus       115 ~D~~~~~~~~~~~~~~p~~-~~~~~~~-g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~  192 (554)
                      +|.++|+++++|...+|.. .+....+ ..+++|+++.+||+|++||+++|       +++||+||++.+          
T Consensus        82 ~d~~~w~~g~~p~~~rp~~~~~~~~~~~~~~~~~~~~~~~def~~f~~~~G-------~~~~~~lN~g~~----------  144 (488)
T 3vny_A           82 SEYTFWNRHAKPTAADEHLAAGPDKGHHAAAREVITPEAVNNLSEFLDKTG-------WKLIYGLNLGKG----------  144 (488)
T ss_dssp             GGSEEECTTCCGGGSCTTCCCCCCCSSSCCCCEEECHHHHHHHHHHHHHHC-------CEEEEEECTTTS----------
T ss_pred             cceEEEcCCCCCcccCcccccCcchhhccccCceeCHHHHHHHHHHHHHhC-------CEEEEEEeCCCC----------
Confidence            9999999998765555521 1111100 01246999999999999999999       999999999764          


Q ss_pred             CCCChHHHHHHHHHHHh--cCCcceeeeeeccCCCC---C-CCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCC
Q 008762          193 GAWDYTNAESFISYTVK--KNYSIHGWELGNELCGN---G-VGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGG  266 (554)
Q Consensus       193 g~W~~~~A~~~l~y~~~--~g~~l~~wElGNEp~~~---~-~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~  266 (554)
                         ++++|++|++||.+  ++++|++||||||||++   + .+.+|++++|+++|++++++||+++|+    .+++||+.
T Consensus       145 ---~~~~a~~~v~y~~~~~~~~~l~~welGNEpd~~~~~G~~~~~~t~~~Y~~~~~~~a~a~k~~~p~----~~l~gp~~  217 (488)
T 3vny_A          145 ---TPENAADEAAYVMETIGADRLLAFQLGNEPDLFYRNGIRPASYDFAAYAGDWQRFFTAIRKRVPN----APFAGPDT  217 (488)
T ss_dssp             ---CHHHHHHHHHHHHHHHCTTTEEEEEESSCGGGHHHHSSSCTTCCHHHHHHHHHHHHHHHHHHCTT----CCEEEEEE
T ss_pred             ---CHHHHHHHHHHHhhcccCCceeEEEecCcccccccCCccCCCCCHHHHHHHHHHHHHHHHhhCCC----CeEEeCCC
Confidence               69999999999986  89999999999999973   3 356899999999999999999999876    36899987


Q ss_pred             CCChHHHHHHHHhcCCCCCeEEEEeecCCCCCCh-hhhhhhcChhh-hHHHHHHHHHHHHHHHhcCCCCcEEEecccccc
Q 008762          267 FFDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQ-HLVEKILDPLY-LDREVDTFSQLENTLKSSATSAVAWVGESGGAY  344 (554)
Q Consensus       267 ~~~~~w~~~fl~~~~~~id~vs~H~Y~~~~g~~~-~~~~~~l~~~~-l~~~~~~~~~~~~~~~~~~~~~p~wl~Etns~~  344 (554)
                      ..+.+|++.||+..+..||++|+|+|+.+++.++ .+++++|+++. +++.   ++.+++++++  +++|+||||+|+++
T Consensus       218 ~~~~~w~~~~l~~~~~~vd~vS~H~Y~~g~~~~~~~t~~~ll~~~~~l~~~---~~~~~~~~~~--~g~p~~lgEtnsa~  292 (488)
T 3vny_A          218 AYNTKWLVPFADKFKHDVKFISSHYYAEGPPTDPSMTIERLMKPNPRLLGE---TAGLKQVEAD--TGLPFRLTETNSCY  292 (488)
T ss_dssp             SSCGGGHHHHHHHTGGGCSEEEEEEEEECCTTCTTCCHHHHTSCCHHHHHH---HHHHHHHHHH--HCCCEEEEEEEEES
T ss_pred             CCCchhhHHHHHhcCccCCEEEEeeCCCCCCCCCCcCHHHHcCchHHHHHH---HHHHHHHHhc--CCCCEEEeccccCC
Confidence            6678999999998888899999999998655433 45788998863 4433   3444444443  46899999999999


Q ss_pred             CCCCCCchhHHHHHHHHHHHHHHHhhcCceeeeeecccCcccccccCCC---CCcCcchHHHHHHHHHcCCCeeeeeec-
Q 008762          345 NSGHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCRQSLIGGNYGLLNTTT---FVPNPDYYSALLWHRLMGRNALSTSFS-  420 (554)
Q Consensus       345 ~~G~~~vSdtf~aalw~lD~Lg~aA~~g~~v~~~q~ligg~Y~l~~~~~---~~p~P~Yy~~lL~~~~~G~~vl~~~~~-  420 (554)
                      |+|.+++||+|++|||++|+++++|+.|++++++|.++|++|+++..+.   +.|+|+||+++||+++||.+++.+++. 
T Consensus       293 ~~G~~~vs~tf~aalw~~D~~~~~a~~g~~~v~~h~g~g~~y~~l~~~~~~g~~~~P~Yy~~~l~~~~~G~~vl~~~~~~  372 (488)
T 3vny_A          293 QGGKQGVSDTFAAALWAGDLMYQQAAAGSTGINFHGGGYGWYTPVAGTPEDGFIARPEYYGMLLFAQAGAGQLLGAKLTD  372 (488)
T ss_dssp             TTCCTTTTTSTHHHHHHHHHHHHHHHHTCCCEEEECCTTCTTCSEEEETTTEEEECHHHHHHHHHHHHCSEEEEEEEEES
T ss_pred             CCCCCCcCHHHHHHHHHHHHHHHHHHcCCcEEEEEcccCCCcceeecCCCcccccCCcHHHHHHHHHHcCCceEeEeecc
Confidence            9999999999999999999999999999998888888899999988763   789999999999999999999988863 


Q ss_pred             CCceeEEEEEEEe-CCCcEEEEEEeCCCCCeEEEEEEecCcccccccccchhhhhhcccCCCCCCceeEEEEEecCCCCc
Q 008762          421 GTKKIRSYAHCAK-QSKGLVLLLINLDNSTTVHASVAFNGTLTSRHKHKSLKMKIIKLPQASVGGNEREEYHLTAKDGDL  499 (554)
Q Consensus       421 ~~~~v~~YA~~~~-~~g~v~l~lIN~~~~~~~~v~i~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~Lt~~~~~l  499 (554)
                      ..+..++||||.. +++.++|++||++.++.+  +|++.|.                      ..+.+..+.|++++.+.
T Consensus       373 ~~~~~~~~ayA~~~~~~~~~vlliN~~~~~~~--~v~l~G~----------------------~~~~~~v~rLta~~~~a  428 (488)
T 3vny_A          373 NSAAPLLTAYALRGTDGRTRIALFNKNLDADV--EVAISGV----------------------ASPSGTVLRLEAPRADD  428 (488)
T ss_dssp             CTTSTTEEEEEEEETTSCEEEEEEECCSSCCE--EEEEESC----------------------CCSEEEEEEEECSSTTC
T ss_pred             CCCCccEEEEEEEcCCCcEEEEEEECCCCccE--EEEecCC----------------------CCceEEEEEEECCCccc
Confidence            3444455555554 257899999999998754  4445552                      23578889999985443


Q ss_pred             cccceeecCeeeecCCCCCCCCCCccccCCC-CceEEcCceEEEEEecCCCC
Q 008762          500 HSQTMLLNGNILSVNSIGDIPTLEPLRVKST-QPVSVGPFSIVFVHMPHVIL  550 (554)
Q Consensus       500 ~s~~v~lNG~~l~~~~~g~~p~l~~~~~~~~-~~~~lPp~S~~f~vl~~~~~  550 (554)
                      . .+|+++|++++.+.++.+|.-....+..+ ..++|||.|++++.|+...+
T Consensus       429 ~-~~it~~G~s~~~~~~~~~~~~~~~~v~~g~~~v~v~a~sa~lv~f~~~~~  479 (488)
T 3vny_A          429 T-TDVTFGGAPVGASGSWSPLVQEYVPGHSGQFVLHMRKASGALLEFAKLAA  479 (488)
T ss_dssp             S-SCCEETTBCCCGGGCCCCSCCEEEECBTTBEEEEECSSEEEEEEECCTTC
T ss_pred             c-cCceECCEEecCCCceeecCeEEEEecCCeEEEEEcCCeEEEEEehhhhh
Confidence            3 48999999998654555554444444443 57899999999999976543
>1qw9_A Arabinosidase, alpha-L-arabinofuranosidase; hydrolase; HET: KHP; 1.20A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 1pz2_A* 1qw8_A* 1pz3_A Back     alignment and structure
>2vrq_A Alpha-L-arabinofuranosidase; hydrolase, glycosidase; HET: XYP; 2.00A {Thermobacillus xylanilyticus} PDB: 2vrk_A Back     alignment and structure
>3ug3_A Alpha-L-arabinofuranosidase; TIM barrel, hydrolase; 1.80A {Thermotoga maritima} PDB: 3ug4_A* 3ug5_A* 3s2c_A 4atw_A Back     alignment and structure
>2c7f_A Alpha-L-arabinofuranosidase; glycosidase, xylan, arabinan, hydrolase; HET: AHR; 2.7A {Clostridium thermocellum} SCOP: b.71.1.2 c.1.8.3 PDB: 2c8n_A Back     alignment and structure
>2y2w_A Arabinofuranosidase; hydrolase, arabinoxylan, glycoside hydrolase family 51; 2.50A {Bifidobacterium longum} Back     alignment and structure
>2e4t_A Endoglucanase, xyloglucanase; TIM barrel, TIM-like barrel, composite domain of glycosyl HY families 5, 30, 39 and 51, hydrolase; 0.96A {Clostridium thermocellum} PDB: 2e0p_A 2eo7_A* 2ej1_A* 2eex_A* 2eqd_A* Back     alignment and structure
>2yih_A CEL44C, xyloglucanase; hydrolase, GH44, endo-glucanase, carbohydrate-binding protei; HET: BGC; 1.70A {Paenibacillus polymyxa} PDB: 2yjq_A* 2ykk_A* 3zq9_A* Back     alignment and structure
>3ii1_A Cellulase; CELM2, glucanase-xyanase, glucanase, xylanase, bifunctional enzyme, hydrolase; HET: BGC; 2.25A {Uncultured bacterium} PDB: 3fw6_A Back     alignment and structure
>3ik2_A Endoglucanase A; TIM-like barrel, hydrolase; 2.20A {Clostridium acetobutylicum} Back     alignment and structure
>1w91_A Beta-xylosidase; MAD, seMet, tetramer, hydrolase; 2.2A {Geobacillus stearothermophilus} SCOP: b.71.1.2 c.1.8.3 PDB: 2bs9_A 2bfg_A* Back     alignment and structure
>4ekj_A Beta-xylosidase; TIM-barrel fold, hemicellulase, hydrolase; 2.50A {Caulobacter vibrioides} Back     alignment and structure
>1uhv_A Beta-xylosidase; family 39 glycoside hydrolase, xylan, xylose, covalent glycosyl-enzyme intermediate; 2.10A {Thermoanaerobacterium saccharolyticum} SCOP: b.71.1.2 c.1.8.3 PDB: 1px8_A Back     alignment and structure
>2y24_A Xylanase; hydrolase, GH5 family, aldotetraouronic acid; HET: XYP GCV PG4 PGE; 1.39A {Erwinia chrysanthemi} PDB: 1nof_A* Back     alignment and structure
>3clw_A Conserved exported protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Bacteroides fragilis} Back     alignment and structure
>3kl0_A Glucuronoxylanase XYNC; alpha beta barrel, (beta/alpha)8 barrel (beta/alpha)8 + beta motif family, hydrolase; HET: TAR HIS; 1.64A {Bacillus subtilis} PDB: 3gtn_A* 3kl3_A* 3kl5_A* Back     alignment and structure
>2nt0_A Glucosylceramidase; cerezyme, glucocerebrosidase, glucosylceramide, hydrolysis, disease, hydrolase; HET: NAG; 1.79A {Homo sapiens} SCOP: b.71.1.2 c.1.8.3 PDB: 1y7v_A* 2f61_A* 2j25_A* 2nsx_A* 1ogs_A* 2nt1_A* 3gxd_A* 3gxf_A* 3gxi_A* 3gxm_A* 3rik_A* 3ril_A* 2v3f_A* 2v3e_A* 2v3d_A* 2vt0_A* 2wcg_A* 2xwd_A* 2xwe_A* 2wkl_A* ... Back     alignment and structure
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella typhimurium, O-glycosyl hydrolase family 30; 2.00A {Salmonella enterica subsp} Back     alignment and structure
>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A* Back     alignment and structure
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A Back     alignment and structure
>4aw7_A GH86A beta-porphyranase; hydrolase, porphyran-hexa-oligosaccharide, complex; HET: GLA GAL L6S AAL; 1.33A {Bacteroides plebeius} Back     alignment and structure
>3aof_A Endoglucanase; glycosyl hydrolase family 5, cellulase, biofuel, hyperthermo hydrolase; HET: BMA; 1.29A {Thermotoga maritima} PDB: 3amg_A* 3amc_A 3amd_A 3mmu_A 3mmw_A 3azs_A* 3azr_A* 3azt_A* Back     alignment and structure
>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A* Back     alignment and structure
>3zr5_A Galactocerebrosidase; hydrolase, GALC, glycosyl hydrolase, krabbe disease, TIM BAR lectin domain; HET: NAG; 2.10A {Mus musculus} PDB: 3zr6_A* Back     alignment and structure
>3nco_A Endoglucanase fncel5A; fncel5A, F. nodosum RT17-B1, hydrolase; 1.50A {Fervidobacterium nodosum} PDB: 3rjx_A 3rjy_A* Back     alignment and structure
>3pzg_A Mannan endo-1,4-beta-mannosidase. glycosyl hydrol 5; alpha/beta barrel, glycosyl hydrolase, sugar binding, secret hydrolase; 1.40A {Thermotoga petrophila} PDB: 3pz9_A 3pzi_A* 3pzm_A 3pzn_A* 3pzo_A* 3pzq_A* Back     alignment and structure
>1qnr_A Endo-1,4-B-D-mannanase; hydrolase, anomalous scattering; HET: NAG MAB; 1.4A {Trichoderma reesei} SCOP: c.1.8.3 PDB: 1qno_A* 1qnq_A* 1qnp_A* 1qns_A* Back     alignment and structure
>3pzt_A Endoglucanase; alpha/beta barrel, glycosyl hydrolase, cellulose binding, HY; 1.97A {Bacillus subtilis subsp} PDB: 3pzu_A 3pzv_A Back     alignment and structure
>3jug_A Beta-mannanase; TIM-barrel, glycosidase, hydrolase; 1.60A {Bacillus} Back     alignment and structure
>3qho_A Endoglucanase, 458AA long hypothetical endo-1,4-beta-glucanase; cellulase, catalytic domain, hydrolase; HET: CTT; 1.65A {Pyrococcus horikoshii} PDB: 3axx_A* 2zum_A 2zun_A* 3qhm_A* 3qhn_A* Back     alignment and structure
>1rh9_A Endo-beta-mannanase; endo-beta-mannase, retaining, glycoside hydrolase family 5; 1.50A {Solanum lycopersicum} SCOP: c.1.8.3 Back     alignment and structure
>4hty_A Cellulase; (alpha/beta)8 barrel, family 5 endoglucanase, hydrolase; 2.00A {Uncultured bacterium} PDB: 4hu0_A* Back     alignment and structure
>3ndz_A Endoglucanase D; cellotriose, xylanase, carbohydrate binding D glucanase, hydrolase; HET: CT3; 2.08A {Clostridium cellulovorans} PDB: 3ndy_A* Back     alignment and structure
>2jep_A Xyloglucanase; family 5, plant cell WALL, hydrolase; 1.4A {Paenibacillus pabuli} PDB: 2jeq_A* Back     alignment and structure
>2whl_A Beta-mannanase, baman5; glycoside hydrolase, hydrolase; HET: MAN BMA; 1.40A {Bacillus agaradhaerens} PDB: 2whj_A Back     alignment and structure
>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A Back     alignment and structure
>1uuq_A Mannosyl-oligosaccharide glucosidase; hydrolase, mannosidase, mannan, glycoside hydrolase, family 5; 1.5A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uz4_A* Back     alignment and structure
>1bqc_A Protein (beta-mannanase); glycosyl hydrolase, family 5, thermomonospora fusca; 1.50A {Thermobifida fusca} SCOP: c.1.8.3 PDB: 2man_A* 3man_A* Back     alignment and structure
>1wky_A Endo-beta-1,4-mannanase; TIM barrel, catalytic domain, CBM, hydrolase; 1.65A {Bacillus SP} SCOP: b.18.1.31 c.1.8.3 Back     alignment and structure
>7a3h_A Endoglucanase; hydrolase, cellulose degradation, glycoside H family 5, michaelis complex, SKEW-BOAT, distortion; 0.95A {Bacillus agaradhaerens} SCOP: c.1.8.3 PDB: 1h2j_A* 1hf6_A* 1ocq_A* 1w3k_A* 1h11_A* 4a3h_A* 5a3h_A* 6a3h_A* 1w3l_A 8a3h_A* 2v38_A* 1qhz_A 1qi0_A* 1e5j_A* 1qi2_A* 1h5v_A* 1a3h_A 2a3h_A* 3a3h_A* 1lf1_A Back     alignment and structure
>1ece_A Endocellulase E1; glycosyl hydrolase; HET: BGC; 2.40A {Acidothermus cellulolyticus} SCOP: c.1.8.3 PDB: 1vrx_A Back     alignment and structure
>3hn3_A Beta-G1, beta-glucuronidase; lysosomal enzyme, acid hydrolase, glycosidase, disease mutat glycoprotein, hydrolase, lysosome, mucopolysaccharidosis; HET: NDG NAG BMA MAN GUP; 1.70A {Homo sapiens} PDB: 1bhg_A* Back     alignment and structure
>1egz_A Endoglucanase Z, EGZ, CEL5; glycosyl hydrolase, CLAN GH-A, family 5-2, cellulase; 2.30A {Erwinia chrysanthemi} SCOP: c.1.8.3 Back     alignment and structure
>1vjz_A Endoglucanase; TM1752, structural genomics, JCSG, PSI, prote structure initiative, joint center for structural genomics; 2.05A {Thermotoga maritima} SCOP: c.1.8.3 Back     alignment and structure
>4awe_A Endo-beta-D-1,4-mannanase; hydrolase, endo-mannanase, glycosyl hydrolase, GH5; HET: NAG; 1.40A {Neurospora sitophila} Back     alignment and structure
>1tvn_A Cellulase, endoglucanase G; glycoside hydrolase, CLAN GH-A, family 5-2; 1.41A {Pseudoalteromonas haloplanktis} SCOP: c.1.8.3 PDB: 1tvp_A* Back     alignment and structure
>2cks_A Endoglucanase E-5; carbohydrate metabolism, polysaccharide degradation, glycoside hydrolase family 5, hydrolase, glycosidase; HET: BEN; 1.6A {Thermobifida fusca} PDB: 2ckr_A* Back     alignment and structure
>3ayr_A Endoglucanase; TIM barrel, hydrolase, carbohydrate/sugar binding; 2.00A {Piromyces rhizinflatus} PDB: 3ays_A* Back     alignment and structure
>1edg_A Endoglucanase A; family A, cellulases, xylanases, family 5 of glycosyl hydrol cellulose degradation; 1.60A {Clostridium cellulolyticum} SCOP: c.1.8.3 Back     alignment and structure
>1nq6_A XYS1; glycoside hydrolase family 10, xylanase, xylan degradation,, hydrolase; 1.78A {Streptomyces halstedii} SCOP: c.1.8.3 Back     alignment and structure
>1h1n_A Endo type cellulase ENGI; hydrolase, glycosyl hydrolase, family 5, subtype, thermophilic, thermophIle, endoglucanase; 1.12A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1gzj_A Back     alignment and structure
>3vup_A Beta-1,4-mannanase; TIM barrel, digestive fluid, HYD; 1.05A {Aplysia kurodai} Back     alignment and structure
>2osx_A Endoglycoceramidase II; (alpha/beta)8 (TIM) barrel, hydrolase; HET: SIA GAL BGC 16C; 1.10A {Rhodococcus SP} PDB: 2oyk_A* 2osw_A* 2oyl_A* 2oym_A* 2osy_A* Back     alignment and structure
>2w61_A GAS2P, glycolipid-anchored surface protein 2; glycoprotein, cell membrane, fungal cell WALL, transglycosyl glucan, membrane, GPI-anchor; 1.62A {Saccharomyces cerevisiae} PDB: 2w62_A* 2w63_A* Back     alignment and structure
>1g01_A Endoglucanase; alpha/beta barrel, TIM barrel, hydrolase; 1.90A {Bacillus SP} SCOP: c.1.8.3 PDB: 1g0c_A* Back     alignment and structure
>3fn9_A Putative beta-galactosidase; structural genomics, glycosidas hydrolase, PSI-2, protein structure initiative; 2.70A {Bacteroides fragilis} Back     alignment and structure
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius} Back     alignment and structure
>3qr3_A Endoglucanase EG-II; TIM barrel, hydrolase; 2.05A {Hypocrea jecorina} Back     alignment and structure
>3cui_A EXO-beta-1,4-glucanase; CEX, xylanase, isofagomine inhibitor, TIM barrel, cellulose degradation, glycosidase, hydrolase; HET: X4S; 1.50A {Cellulomonas fimi} PDB: 3cug_A* 3cuh_A* 3cuf_A* 3cuj_A* 1fh9_A* 1fh7_A 1fh8_A 1exp_A* 1fhd_A* 1j01_A* 2exo_A 2xyl_A 2his_A* Back     alignment and structure
>1n82_A Xylanase, intra-cellular xylanase; hydrolase; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 3mua_A* 2q8x_A* 3msd_A* 3msg_A* 3mui_A* 3ms8_A Back     alignment and structure
>3n9k_A Glucan 1,3-beta-glucosidase; aromatic entranceway/clamp, exoglucanase, glycoside hydrolas protein-carbohydrate interaction; HET: BGC; 1.70A {Candida albicans} SCOP: c.1.8.3 PDB: 2pc8_A* 2pb1_A* 2pbo_A 3o6a_A 2pf0_A 1cz1_A 1eqc_A* 1eqp_A Back     alignment and structure
>1ur1_A Endoxylanase; hydrolase, family 10, glycoside hydrolase, hemicellulose, xylan degradation; HET: XYS AHR; 1.43A {Cellvibrio mixtus} SCOP: c.1.8.3 PDB: 1uqy_A* 1uqz_A* 1ur2_A* 2cnc_A* Back     alignment and structure
>1h4p_A Glucan 1,3-beta-glucosidase I/II; hydrolase, glucan degradation, hydrolyase, glycosidase; HET: NAG BMA MAN NDG; 1.75A {Saccharomyces cerevisiae} SCOP: c.1.8.3 Back     alignment and structure
>2dep_A Xylanase B, thermostable celloxylanase; glycosidase, xylan degradation, family 10, structural genomics, NPPSFA; 1.80A {Clostridium stercorarium} Back     alignment and structure
>2y8k_A Arabinoxylanase, carbohydrate binding family 6; hydrolase; 1.47A {Clostridium thermocellum} Back     alignment and structure
>1xyz_A 1,4-beta-D-xylan-xylanohydrolase; glycosyl hydrolase, xylanase, family F/10 of glycosyl hydrolases, glycosyltransferase; 1.40A {Clostridium thermocellum} SCOP: c.1.8.3 Back     alignment and structure
>2c0h_A Mannan endo-1,4-beta-mannosidase; hydrolase, signal, TIM alpha/beta barrel; 1.6A {Mytilus edulis} SCOP: c.1.8.3 Back     alignment and structure
>3cmg_A Putative beta-galactosidase; structural genomics, PSI-2, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.90A {Bacteroides fragilis} Back     alignment and structure
>1ta3_B Endo-1,4-beta-xylanase; beta alpha barrel (XIP-I), beta alpha barrel (xylanase), HYD inhibitor-hydrolase complex; HET: NAG; 1.70A {Emericella nidulans} SCOP: c.1.8.3 Back     alignment and structure
>3lpf_A Beta-glucuronidase; alpha/beta barrel, sugar-binding domain, beta-sandwich domai glycosyl hydrolase, glycosida hydrolase; HET: Z77; 2.26A {Escherichia coli} PDB: 3k46_A* 3k4d_A* 3lpg_A* 3k4a_A Back     alignment and structure
>1i1w_A Endo-1,4-beta-xylanase; xylan degradation, hydrolase, glycosidase, enzyme, ultra HIG resolution, cryo temperature, 1; HET: PCA; 0.89A {Thermoascus aurantiacus} SCOP: c.1.8.3 PDB: 1i1x_A* 2bnj_A* 1gok_A 1gom_A 1goo_A 1goq_A* 1gor_A* 1k6a_A 3o2l_A 3nyd_A* 1tux_A 1b31_A 1b30_A 1b3v_A* 1b3w_A* 1b3x_A* 1b3y_A* 1b3z_A* 1bg4_A Back     alignment and structure
>3ur8_A Glucan endo-1,3-beta-D-glucosidase; glucoside hydrolase, GH17 family, pathogenesis-related class protein (PR-2), TIM barrel; 1.26A {Solanum tuberosum} PDB: 3ur7_A Back     alignment and structure
>1v0l_A Endo-1,4-beta-xylanase A; glycoside hydrolase family 10, xylan degradation, isofagomine, hydrolase; 0.98A {Streptomyces lividans} SCOP: c.1.8.3 PDB: 1e0x_A 1e0w_A* 1od8_A 1v0k_A 1v0m_A 1v0n_A 1e0v_A* 1xas_A 2g3i_A 2g3j_A* 2g4f_A 1v6y_A Back     alignment and structure
>3u7b_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA MAN; 1.94A {Fusarium oxysporum} Back     alignment and structure
>3niy_A Endo-1,4-beta-xylanase; TIM-barrel, hydrolase; 1.58A {Thermotoga petrophila rku-1} SCOP: c.1.8.3 PDB: 3nj3_A* 1vbr_A* 1vbu_A Back     alignment and structure
>1r85_A Endo-1,4-beta-xylanase; hydrolase; HET: GOL; 1.45A {Geobacillus stearothermophilus} SCOP: c.1.8.3 PDB: 1hiz_A* 1r87_A* 3mmd_A* 1r86_A Back     alignment and structure
>2uwf_A Endoxylanase, alkaline active endoxylanase; hydrolase, xylan degradation, xylanase structure, glycosidase, alkaliphilic; 2.10A {Bacillus halodurans} PDB: 2f8q_A 2fgl_A* Back     alignment and structure
>3em5_A Beta-1,3-glucanase; glycoprotein, rossmann fold, (beta-alpha)8-TIM-barrel, glyco hydrolase, allergen; HET: NAG FUC MAN; 2.50A {Hevea brasiliensis} SCOP: c.1.8.3 PDB: 3f55_A* Back     alignment and structure
>4f8x_A Endo-1,4-beta-xylanase; TIM barrel, hydrolase; HET: NAG BMA; 1.47A {Penicillium canescens} Back     alignment and structure
>3emz_A Xylanase, endo-1,4-beta-xylanase; (alpha/beta)8 barrel, GH10 enzyme complex, hydrolase; HET: HXH; 2.08A {Bacillus SP} SCOP: c.1.8.3 PDB: 3emq_A* 3emc_A* Back     alignment and structure
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A* Back     alignment and structure
>1us2_A Xylanase10C, endo-beta-1,4-xylanase; hydrolase, carbohydrate binding module, xylan degradation; HET: XYP; 1.85A {Cellvibrio japonicus} SCOP: b.18.1.11 c.1.8.3 PDB: 1us3_A Back     alignment and structure
>3gm8_A Glycoside hydrolase family 2, candidate beta-GLYC; structural genomics, glycosidase, PSI-2, protein initiative; 2.40A {Bacteroides vulgatus} Back     alignment and structure
>1aq0_A 1,3-1,4-beta-glucanase; hydrolase, glycosidase, glycoprotein, glycosylated protein; HET: NAG; 2.00A {Hordeum vulgare} SCOP: c.1.8.3 PDB: 1ghr_A Back     alignment and structure
>1ghs_A 1,3-beta-glucanase; hydrolase; 2.30A {Hordeum vulgare} SCOP: c.1.8.3 Back     alignment and structure
>2cyg_A Beta-1, 3-glucananse; endo-beta-1,3-glucanase, (beta-alpha)8-TIM-barrel, B-cell epitopes, allergen, banana, hydrolase; 1.45A {Musa acuminata} SCOP: c.1.8.3 Back     alignment and structure
>1w32_A Endo-1,4-beta-xylanase A precursor; mutant, calcium ION, thermostable, glycosyle hydrolase, family 10, error prone PCR, hydrolase; 1.2A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1w2p_A 1w2v_A 1w3h_A 1clx_A 1e5n_A* 1xys_A Back     alignment and structure
>2d1z_A Endo-1,4-beta-D-xylanase; TIM-barrel, retaining enzyme, catalytic-site mutant, chemica hydrolase; 1.60A {Streptomyces olivaceoviridis} PDB: 2d20_A* 2d22_A 2d23_A 2d24_A* 1xyf_A 1isw_A* 1isx_A* 1isy_A* 1isv_A* 1it0_A* 1v6u_A* 1v6v_A* 1v6w_A* 1v6x_A* 1isz_A Back     alignment and structure
>1yq2_A Beta-galactosidase; glycosyl hydrolase family 2, TIM barrel, hexamer; 1.90A {Arthrobacter SP} SCOP: b.1.4.1 b.1.4.1 b.18.1.5 b.30.5.1 c.1.8.3 Back     alignment and structure
>2v3g_A Endoglucanase H; beta-1 4 beta-1 3 glucanase, lichenase, hydrolase, glycosidase, glycoside hydrolase family 26; HET: BGC NOY; 1.20A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 2bv9_A 2bvd_A* 2cip_A* 2cit_A* 2vi0_A* Back     alignment and structure
>2vx5_A Cellvibrio japonicus mannanase cjman26C; hydrolase; HET: BMA; 1.47A {Cellvibrio japonicus} PDB: 2vx4_A* 2vx6_A* 2vx7_A* Back     alignment and structure
>3tp4_A Computational design of enzyme; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.98A {Synthetic construct} PDB: 2x2y_A 2bvy_A 2bvt_A Back     alignment and structure
>1odz_A Mannanase A; hydrolase, family 26, glycoside-hydrolase, glycosynthase, manno-oligosaccharide; HET: MAN BMA; 1.4A {Cellvibrio japonicus} SCOP: c.1.8.3 PDB: 1r7o_A* 2whm_A* 1j9y_A 1gvy_A* 1gw1_A* Back     alignment and structure
>4h41_A Putative alpha-L-fucosidase; hydrolase, carbohydrate metabolism, HOST glycans, structural genomics; HET: MSE 1PE PE4 PG4 PG6; 1.80A {Bacteroides thetaiotaomicron} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 554
d1uhva2346 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic do 2e-06
d1qw9a2367 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, ca 6e-04
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Length = 346 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Beta-D-xylosidase, catalytic domain
species: Thermoanaerobacterium saccharolyticum [TaxId: 28896]

 Score = 47.4 bits (111), Expect = 2e-06
 Identities = 43/326 (13%), Positives = 88/326 (26%), Gaps = 19/326 (5%)

Query: 96  LLNAVKAFSPLKIRLGGTLQDKVIYDTEDNRQPCKQFVKNSSEMFGFTQGCLPMHRWDEL 155
           L    +      IR  G L D V    ED      +   N + +       L +     +
Sbjct: 26  LKYVKENIDFKYIRGHGLLCDDVGIYREDVVGDEVKPFYNFTYIDRIFDSFLEIG----I 81

Query: 156 NAFFKKSGCPCIQFRAK-IVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTVKKNYSI 214
             F +    P         VF        +   D              FIS    +    
Sbjct: 82  RPFVEIGFMPKKLASGTQTVFYWEGNV--TPPKDYEKWSDLVKAVLHHFISRYGIEEVLK 139

Query: 215 HGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGFFDAKWFK 274
             +E+ NE             +Y          ++++   +      I  G  +  + F 
Sbjct: 140 WPFEIWNEPNLKEFWKDADEKEYFKLYKVTAKAIKEVNENLKVGGPAICGGADYWIEDFL 199

Query: 275 EFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILDPLYLDREVDTFSQLENTLKSSATSAV 334
            F  +    +D  + H Y    G     +             +  +  E    S   +  
Sbjct: 200 NFCYEENVPVDFVSRHAYTSKQGEYTPHLIYQEIMPSEYMLNEFKTVREIIKNSHFPNLP 259

Query: 335 AWVGESGGAYNSGHNLVT----NAFVFSFWYLDQLGMAAA-------HDTKTYCRQSLIG 383
             + E   +Y+  + +       A++          + +           +    +S   
Sbjct: 260 FHITEYNTSYSPQNPVHDTPFNAAYIARILSEGGDYVDSFSYWTFSDVFEERDVPRSQFH 319

Query: 384 GNYGLLNTTTFVPNPDYYSALLWHRL 409
           G +GL+     +P P +Y+   ++ +
Sbjct: 320 GGFGLV-ALNMIPKPTFYTFKFFNAM 344
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 367 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query554
d1qw9a2367 Alpha-L-arabinofuranosidase, catalytic domain {Bac 100.0
d1uhva2346 Beta-D-xylosidase, catalytic domain {Thermoanaerob 99.77
d1ur4a_387 Beta-1,4-galactanase {Bacillus licheniformis [TaxI 98.84
d1foba_334 Beta-1,4-galactanase {Fungus (Aspergillus aculeatu 98.66
d1xyza_320 Xylanase {Clostridium thermocellum, XynZ [TaxId: 1 98.62
d1vbua1324 Xylanase {Thermotoga maritima [TaxId: 2336]} 98.51
d1qw9a1130 Alpha-l-arabinofuranosidase {Bacillus stearothermo 98.49
d1hjsa_332 Beta-1,4-galactanase {Thielavia heterothallica, ak 98.41
d2c7fa1131 Alpha-l-arabinofuranosidase {Clostridium thermocel 98.27
d1ceoa_340 Endoglucanase CelC {Clostridium thermocellum [TaxI 98.26
d1uuqa_410 Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} 98.23
d1fh9a_312 Xylanase A, catalytic core {Cellulomonas fimi [Tax 98.09
d1nq6a_302 Xylanase A, catalytic core {Streptomyces halstedii 98.06
d1nofa2277 Glycosyl hydrolase family 5 xylanase, catalytic do 98.03
d1egza_291 Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 98.01
d1rh9a1370 Beta-mannanase {Tomato (Lycopersicon esculentum) [ 97.98
d1vjza_325 Endoglucanase homologue TM1752 {Thermotoga maritim 97.86
d1qnra_344 Beta-mannanase {Trichoderma reesei [TaxId: 51453]} 97.85
d1wkya2297 Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 2449 97.82
d1n82a_330 Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId 97.79
d7a3ha_300 Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId 97.78
d1ecea_358 Endocellulase E1 {Acidothermus cellulolyticus [Tax 97.76
d1tvna1293 Endoglucanase Cel5a {Pseudoalteromonas haloplankti 97.69
d1bqca_302 Beta-mannanase {Thermomonospora fusca [TaxId: 2021 97.67
d1v0la_302 Xylanase A, catalytic core {Streptomyces lividans 97.63
d1h1na_305 Endocellulase EngI {Thermoascus aurantiacus [TaxId 97.52
d1edga_380 Endoglucanase CelA {Clostridium cellulolyticum [Ta 97.41
d1g01a_357 Alkaline cellulase K catalytic domain {Bacillus sp 97.4
d1bhga3304 beta-Glucuronidase, domain 3 {Human (Homo sapiens) 97.39
d2nt0a2354 Glucosylceramidase, catalytic domain {Human (Homo 97.22
d1us3a2364 Xylanase 10c {Cellvibrio japonicus [TaxId: 155077] 97.06
d1ta3b_301 Xylanase A, catalytic core {Emericella nidulans (A 96.95
d2c0ha1350 endo-1,4-beta-mannosidase {Blue mussel (Mytilus ed 96.79
d1ghsa_306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 96.67
d1nofa1106 Glycosyl hydrolase family 5 xylanase {Erwinia chry 95.96
d2cyga1312 Plant beta-glucanases {Banana (Musa acuminata), 1, 95.9
d2pb1a1394 Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) 95.59
d1i1wa_303 Xylanase A, catalytic core {Thermoascus aurantiacu 95.29
d2v3ga1273 Endoglucanase H N-terminal domain {Clostridium the 95.04
d1r85a_371 Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 94.96
d1aq0a_306 Plant beta-glucanases {Barley (Hordeum vulgare), 1 93.82
d1h4pa_408 Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharom 93.23
d1ur1a_350 Xylanase {Cellvibrio mixtus [TaxId: 39650]} 91.93
d2je8a5348 Five-domain beta-mannosidase, domain 3 {Bacteroide 85.27
d1jz8a5292 beta-Galactosidase, domain 3 {Escherichia coli [Ta 84.61
d1m7xa2106 1,4-alpha-glucan branching enzyme {Escherichia col 83.91
d1w32a_346 Xylanase A, catalytic core {Pseudomonas fluorescen 81.38
d1wzla283 Maltogenic amylase {Thermoactinomyces vulgaris, TV 81.08
d1yq2a5297 beta-Galactosidase, domain 3 {Arthrobacter sp. c2- 80.51
d2vzsa5339 Exochitosanase CsxA {Amycolatopsis orientalis [Tax 80.02
>d1qw9a2 c.1.8.3 (A:18-384) Alpha-L-arabinofuranosidase, catalytic domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: beta-glycanases
domain: Alpha-L-arabinofuranosidase, catalytic domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=3.3e-36  Score=311.90  Aligned_cols=315  Identities=17%  Similarity=0.140  Sum_probs=226.4

Q ss_pred             ccCCceeEEEeccCCCCCCCCCCcccccccccccCCCcHHHHHHHHHcCCCeEec-CCcccceEeeecCCCCCccCcccc
Q 008762           56 RTDDDFVCATLDWWPPEKCDYGTCSWDRASLLNLDLNSNILLNAVKAFSPLKIRL-GGTLQDKVIYDTEDNRQPCKQFVK  134 (554)
Q Consensus        56 ~i~~~f~g~sie~wp~~~~~y~~~~~~~~sl~~~~l~~~~L~~l~k~L~p~~LRi-GG~~~D~~~~~~~~~~~~~~p~~~  134 (554)
                      .|+|+++|+++|+  .++|+|+++|.++++++|.+..++.|++++|.|+|++||+ |||++|.|+|+++.++...+|...
T Consensus         1 ~i~~~i~g~f~E~--lg~~i~~g~~~~~~~~~~~~G~R~dv~~~l~~l~~~~lR~PGG~~~~~y~W~~~iGp~~~Rp~~~   78 (367)
T d1qw9a2           1 EIDKRIYGSFIEH--LGRAVYGGIYEPGHPQADENGFRQDVIELVKELQVPIIRYPGGNFVSGYNWEDGVGPKEQRPRRL   78 (367)
T ss_dssp             ECCGGGGEEECCS--STTSTBTTTBCTTCTTBCTTSBBHHHHHHHHHHTCCEEEESCSGGGGGCCGGGGSSCGGGCCCEE
T ss_pred             CCChhhccchhhh--ccCcccCceeCCCCCCCCCcccHHHHHHHHHhcCCCEEeeCCccccCccccccccCChHHCCCcc
Confidence            3899999999996  7899999999888889999977788999999999999996 999999999999988866666432


Q ss_pred             C------CCCcccccccccCchhHHHHHHHHHHcCCCccccccEEEEEeecCCCCcccCCCCCCCCCChHHHHHHHHHHH
Q 008762          135 N------SSEMFGFTQGCLPMHRWDELNAFFKKSGCPCIQFRAKIVFGLNALTGRSIQNDGSVKGAWDYTNAESFISYTV  208 (554)
Q Consensus       135 ~------~~~~~g~~~~~~t~~~wd~~~~f~~~~G~~~~~~~~~~i~glN~~~~~~~~~~~~~~g~W~~~~A~~~l~y~~  208 (554)
                      +      +++.||+          +||++||+++|       +++++++|++.+             .+++|++||+||+
T Consensus        79 ~~~w~~~~~~~~G~----------~Ef~~~~~~~g-------aep~~~vn~g~~-------------~~~~a~d~vey~n  128 (367)
T d1qw9a2          79 DLAWKSVETNEIGL----------NEFMDWAKMVG-------AEVNMAVNLGTR-------------GIDAARNLVEYCN  128 (367)
T ss_dssp             ETTTTEEECCSSCH----------HHHHHHHHHHT-------CEEEEEECCSSC-------------CHHHHHHHHHHHH
T ss_pred             CCCCCCcCcCCCCH----------HHHHHHHHHhC-------CeEEEEEeCCCc-------------cHHHHHHHHHHHc
Confidence            1      3345666          99999999999       999999999876             4899999999984


Q ss_pred             ----------------hcCCcceeeeeeccCCCCCCCCCCCHHHHHHHHHHHHHHHHHHccCCCCCceEEccCCC-----
Q 008762          209 ----------------KKNYSIHGWELGNELCGNGVGTRVAAAQYATDTISLRNVVQKIYTGVDSKPLIIAPGGF-----  267 (554)
Q Consensus       209 ----------------~~g~~l~~wElGNEp~~~~~~~~~t~~~Ya~d~~~~~~~l~~~~~~~~~~~~~vgP~~~-----  267 (554)
                                      .++|+|++||||||+|+.......++++|++.+++|+++||+++|++    ++++.+..     
T Consensus       129 ~~~~t~~~~~R~~~G~~~P~~v~yweIGNE~~g~~~~g~~~~~~Y~~~~~~f~~amk~~dP~i----~lia~g~~~~~~~  204 (367)
T d1qw9a2         129 HPSGSYYSDLRIAHGYKEPHKIKTWCLGNAMDGPWQIGHKTAVEYGRIACEAAKVMKWVDPTI----ELVVCGSSNRNMP  204 (367)
T ss_dssp             CCSSSHHHHHHHHTTCCSCCCCCEEEESSCCCSTTSTTCCCHHHHHHHHHHHHHHHHHHCTTC----EEEECCCSCTTST
T ss_pred             cCCCCHHHHHHHHcCCCCCCCceEEEeccccccccccCCCCHHHHHHHHHHHHHHHhhcCCCe----eEEEEeCCCCCCc
Confidence                            25689999999999998432235899999999999999999999873    56655432     


Q ss_pred             CChHHHHHHHHhcCCCCCeEEEEeecCCCCCChhhhhhhcC-hhhhHHHHHHHHHH-HHHH--HhcCCCCcEEEeccccc
Q 008762          268 FDAKWFKEFLDKSGQSLDVATHHIYNLGPGVDQHLVEKILD-PLYLDREVDTFSQL-ENTL--KSSATSAVAWVGESGGA  343 (554)
Q Consensus       268 ~~~~w~~~fl~~~~~~id~vs~H~Y~~~~g~~~~~~~~~l~-~~~l~~~~~~~~~~-~~~~--~~~~~~~p~wl~Etns~  343 (554)
                      ...+|++.+++..+..+|++|.|+|+.+...+..   ..+. ...++...+.+..+ ..+.  ....++.++.++|+|.+
T Consensus       205 ~~~~w~~~vl~~~~~~iD~is~H~Y~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~i~iavdEwn~w  281 (367)
T d1qw9a2         205 TFAEWEATVLDHTYDHVDYISLHQYYGNRDNDTA---NYLALSLEMDDFIRSVVAIADYVKAKKRSKKTIHLSFDEWNVW  281 (367)
T ss_dssp             TTTHHHHHHHHHHGGGCSEEEEEEEECCTTCCHH---HHTTTHHHHHHHHHHHHHHHHHHHHHHTCSCCCEEEEEEEEEC
T ss_pred             ccchHHHHHHhhccccCCcccccCCCCCCccchh---hhhhhHHHHHHHHHHHHHHHHHHHhhccCCCCceEEeeccccc
Confidence            1347999999999989999999999865332221   1111 11122222222222 1121  12345677899999987


Q ss_pred             cCC--------------CCCCchhHHHHHHHHHHHHHHHhhcCceeeee---ecccCcccc-cccCC-CCCcCcchHHHH
Q 008762          344 YNS--------------GHNLVTNAFVFSFWYLDQLGMAAAHDTKTYCR---QSLIGGNYG-LLNTT-TFVPNPDYYSAL  404 (554)
Q Consensus       344 ~~~--------------G~~~vSdtf~aalw~lD~Lg~aA~~g~~v~~~---q~ligg~Y~-l~~~~-~~~p~P~Yy~~l  404 (554)
                      +..              +.-.-.+++.+||..+-+|....+++-.|.|-   | ++.---. +++.+ ....+|.||++.
T Consensus       282 y~~~~~~~~~~~~~~~~~~l~~~~tl~~AL~~A~~L~~~~R~sD~V~mA~~A~-lvNvl~~i~~~~~~~~~~~~~y~v~~  360 (367)
T d1qw9a2         282 YHSNEADKLIEPWTVAPPLLEDIYNFEDALLVGCMLITLMKHADRVKIACLAQ-LVNVIAPIMTEKNGPAWKQTIYYPFM  360 (367)
T ss_dssp             CTTHHHHTTCCTTBSSCCTTCCCCBHHHHHHHHHHHHHHHHTTTTEEEEEEEC-SBSSSCSEEECTTSCEEECTTHHHHH
T ss_pred             cccccccccccccccCcccccccCcHHHHHHHHHHHHHHHHccCeeeeeehhH-hhhhhcceEecCCCCeeeCcchHHHH
Confidence            631              11111235666666666666666666444322   3 2221101 22322 455789999999


Q ss_pred             HHHHHc
Q 008762          405 LWHRLM  410 (554)
Q Consensus       405 L~~~~~  410 (554)
                      |+++++
T Consensus       361 ~~s~~~  366 (367)
T d1qw9a2         361 HASVYG  366 (367)
T ss_dssp             HHHHHC
T ss_pred             HHHHhc
Confidence            999884
>d1uhva2 c.1.8.3 (A:14-359) Beta-D-xylosidase, catalytic domain {Thermoanaerobacterium saccharolyticum [TaxId: 28896]} Back     information, alignment and structure
>d1ur4a_ c.1.8.3 (A:) Beta-1,4-galactanase {Bacillus licheniformis [TaxId: 1402]} Back     information, alignment and structure
>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus aculeatus) [TaxId: 5053]} Back     information, alignment and structure
>d1xyza_ c.1.8.3 (A:) Xylanase {Clostridium thermocellum, XynZ [TaxId: 1515]} Back     information, alignment and structure
>d1vbua1 c.1.8.3 (A:517-840) Xylanase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qw9a1 b.71.1.2 (A:5-17,A:385-501) Alpha-l-arabinofuranosidase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1hjsa_ c.1.8.3 (A:) Beta-1,4-galactanase {Thielavia heterothallica, aka Myceliophthora thermophila [TaxId: 78579]} Back     information, alignment and structure
>d2c7fa1 b.71.1.2 (A:2-16,A:387-502) Alpha-l-arabinofuranosidase {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1ceoa_ c.1.8.3 (A:) Endoglucanase CelC {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1uuqa_ c.1.8.3 (A:) Exomannosidase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d1fh9a_ c.1.8.3 (A:) Xylanase A, catalytic core {Cellulomonas fimi [TaxId: 1708]} Back     information, alignment and structure
>d1nq6a_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces halstedii [TaxId: 1944]} Back     information, alignment and structure
>d1nofa2 c.1.8.3 (A:44-320) Glycosyl hydrolase family 5 xylanase, catalytic domain {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1egza_ c.1.8.3 (A:) Endoglucanase Cel5a {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d1rh9a1 c.1.8.3 (A:30-399) Beta-mannanase {Tomato (Lycopersicon esculentum) [TaxId: 4081]} Back     information, alignment and structure
>d1vjza_ c.1.8.3 (A:) Endoglucanase homologue TM1752 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1qnra_ c.1.8.3 (A:) Beta-mannanase {Trichoderma reesei [TaxId: 51453]} Back     information, alignment and structure
>d1wkya2 c.1.8.3 (A:34-330) Beta-mannanase {Bacillus sp. JAMB-602 [TaxId: 244966]} Back     information, alignment and structure
>d1n82a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Ixt6 [TaxId: 1422]} Back     information, alignment and structure
>d7a3ha_ c.1.8.3 (A:) Endoglucanase Cel5a {Bacillus agaradhaerens [TaxId: 76935]} Back     information, alignment and structure
>d1ecea_ c.1.8.3 (A:) Endocellulase E1 {Acidothermus cellulolyticus [TaxId: 28049]} Back     information, alignment and structure
>d1tvna1 c.1.8.3 (A:1-293) Endoglucanase Cel5a {Pseudoalteromonas haloplanktis [TaxId: 228]} Back     information, alignment and structure
>d1bqca_ c.1.8.3 (A:) Beta-mannanase {Thermomonospora fusca [TaxId: 2021]} Back     information, alignment and structure
>d1v0la_ c.1.8.3 (A:) Xylanase A, catalytic core {Streptomyces lividans [TaxId: 1916]} Back     information, alignment and structure
>d1h1na_ c.1.8.3 (A:) Endocellulase EngI {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d1edga_ c.1.8.3 (A:) Endoglucanase CelA {Clostridium cellulolyticum [TaxId: 1521]} Back     information, alignment and structure
>d1g01a_ c.1.8.3 (A:) Alkaline cellulase K catalytic domain {Bacillus sp. [TaxId: 1409]} Back     information, alignment and structure
>d1bhga3 c.1.8.3 (A:329-632) beta-Glucuronidase, domain 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2nt0a2 c.1.8.3 (A:78-431) Glucosylceramidase, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1us3a2 c.1.8.3 (A:243-606) Xylanase 10c {Cellvibrio japonicus [TaxId: 155077]} Back     information, alignment and structure
>d1ta3b_ c.1.8.3 (B:) Xylanase A, catalytic core {Emericella nidulans (Aspergillus nidulans) [TaxId: 162425]} Back     information, alignment and structure
>d2c0ha1 c.1.8.3 (A:18-367) endo-1,4-beta-mannosidase {Blue mussel (Mytilus edulis) [TaxId: 6550]} Back     information, alignment and structure
>d1ghsa_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1nofa1 b.71.1.2 (A:31-43,A:321-413) Glycosyl hydrolase family 5 xylanase {Erwinia chrysanthemi [TaxId: 556]} Back     information, alignment and structure
>d2cyga1 c.1.8.3 (A:29-340) Plant beta-glucanases {Banana (Musa acuminata), 1,3-beta-glucanase [TaxId: 4641]} Back     information, alignment and structure
>d2pb1a1 c.1.8.3 (A:7-400) Exo-beta-(1,3)-glucanase {Yeast (Candida albicans) [TaxId: 5476]} Back     information, alignment and structure
>d1i1wa_ c.1.8.3 (A:) Xylanase A, catalytic core {Thermoascus aurantiacus [TaxId: 5087]} Back     information, alignment and structure
>d2v3ga1 c.1.8.3 (A:8-280) Endoglucanase H N-terminal domain {Clostridium thermocellum [TaxId: 1515]} Back     information, alignment and structure
>d1r85a_ c.1.8.3 (A:) Xylanase {Bacillus stearothermophilus, Xt6 [TaxId: 1422]} Back     information, alignment and structure
>d1aq0a_ c.1.8.3 (A:) Plant beta-glucanases {Barley (Hordeum vulgare), 1,3-1,4-beta-glucanase [TaxId: 4513]} Back     information, alignment and structure
>d1h4pa_ c.1.8.3 (A:) Exo-beta-(1,3)-glucanase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1ur1a_ c.1.8.3 (A:) Xylanase {Cellvibrio mixtus [TaxId: 39650]} Back     information, alignment and structure
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1jz8a5 c.1.8.3 (A:334-625) beta-Galactosidase, domain 3 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1m7xa2 b.71.1.1 (A:623-728) 1,4-alpha-glucan branching enzyme {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1w32a_ c.1.8.3 (A:) Xylanase A, catalytic core {Pseudomonas fluorescens [TaxId: 294]} Back     information, alignment and structure
>d1wzla2 b.71.1.1 (A:503-585) Maltogenic amylase {Thermoactinomyces vulgaris, TVAII [TaxId: 2026]} Back     information, alignment and structure
>d1yq2a5 c.1.8.3 (A:313-609) beta-Galactosidase, domain 3 {Arthrobacter sp. c2-2 [TaxId: 192168]} Back     information, alignment and structure
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]} Back     information, alignment and structure